Query psy14765
Match_columns 269
No_of_seqs 246 out of 2591
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 20:03:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14765.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14765hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v9t_B SLIT homolog 2 protein 100.0 1.4E-29 4.8E-34 207.4 16.0 171 20-198 2-174 (220)
2 2v70_A SLIT-2, SLIT homolog 2 100.0 4.6E-28 1.6E-32 198.3 15.9 170 21-198 3-175 (220)
3 3zyj_A Leucine-rich repeat-con 99.9 3.2E-26 1.1E-30 205.7 20.2 186 20-214 32-220 (440)
4 2xot_A Amphoterin-induced prot 99.9 9E-27 3.1E-31 204.3 15.6 170 17-192 6-180 (361)
5 2o6s_A Variable lymphocyte rec 99.9 2.8E-26 9.7E-31 185.7 17.2 162 23-191 1-164 (208)
6 3m19_A Variable lymphocyte rec 99.9 1.9E-26 6.7E-31 192.1 15.9 187 22-215 3-193 (251)
7 1ozn_A Reticulon 4 receptor; N 99.9 4.2E-26 1.4E-30 193.4 18.0 187 22-214 1-190 (285)
8 3zyi_A Leucine-rich repeat-con 99.9 7.7E-26 2.7E-30 203.9 19.9 205 21-234 44-252 (452)
9 2id5_A Lingo-1, leucine rich r 99.9 2.4E-25 8.4E-30 201.7 20.0 187 22-215 2-190 (477)
10 2o6q_A Variable lymphocyte rec 99.9 3.2E-25 1.1E-29 186.7 19.3 206 24-236 9-217 (270)
11 2wfh_A SLIT homolog 2 protein 99.9 5.7E-25 2E-29 176.3 15.5 137 21-164 2-140 (193)
12 1p9a_G Platelet glycoprotein I 99.9 1.2E-24 4.1E-29 185.3 18.0 204 25-235 2-206 (290)
13 4g8a_A TOLL-like receptor 4; l 99.9 3.5E-25 1.2E-29 206.3 15.7 167 22-193 22-191 (635)
14 2z80_A TOLL-like receptor 2, v 99.9 2.5E-25 8.5E-30 194.3 13.5 206 5-218 6-215 (353)
15 2xwt_C Thyrotropin receptor; s 99.9 3.2E-25 1.1E-29 183.3 13.1 205 21-237 2-218 (239)
16 3e6j_A Variable lymphocyte rec 99.9 1.5E-24 5.3E-29 178.3 16.2 169 21-197 11-181 (229)
17 1w8a_A SLIT protein; signaling 99.9 1.4E-24 4.7E-29 173.9 15.1 138 22-165 1-141 (192)
18 2z66_A Variable lymphocyte rec 99.9 1.7E-24 5.8E-29 185.2 13.9 159 23-188 1-163 (306)
19 2o6r_A Variable lymphocyte rec 99.9 8.5E-24 2.9E-28 166.9 15.4 139 23-167 1-141 (177)
20 2ft3_A Biglycan; proteoglycan, 99.9 1.9E-23 6.3E-28 180.9 18.8 163 20-191 24-188 (332)
21 4ay9_X Follicle-stimulating ho 99.9 2.9E-24 9.9E-29 187.5 13.6 167 22-194 1-173 (350)
22 1xku_A Decorin; proteoglycan, 99.9 3.3E-23 1.1E-27 179.1 19.7 164 21-192 23-188 (330)
23 2z62_A TOLL-like receptor 4, v 99.9 7.8E-23 2.7E-27 172.4 16.7 163 25-192 1-166 (276)
24 3t6q_A CD180 antigen; protein- 99.9 9.9E-23 3.4E-27 189.6 14.6 191 21-218 2-196 (606)
25 3v47_A TOLL-like receptor 5B a 99.9 2.3E-22 7.8E-27 180.8 16.1 166 21-194 2-173 (455)
26 3m19_A Variable lymphocyte rec 99.9 7.3E-22 2.5E-26 164.4 15.7 162 34-198 36-202 (251)
27 2z80_A TOLL-like receptor 2, v 99.9 2.1E-22 7.2E-27 175.7 12.5 186 2-190 6-213 (353)
28 3vq2_A TLR4, TOLL-like recepto 99.9 5.8E-22 2E-26 184.4 16.2 192 27-223 7-203 (606)
29 1ziw_A TOLL-like receptor 3; i 99.9 5E-22 1.7E-26 187.3 15.3 182 26-214 1-184 (680)
30 2o6q_A Variable lymphocyte rec 99.9 3.1E-21 1.1E-25 162.3 17.5 175 35-214 39-218 (270)
31 3g39_A Variable lymphocyte rec 99.9 1.3E-21 4.6E-26 153.5 12.9 114 22-141 2-117 (170)
32 1ozn_A Reticulon 4 receptor; N 99.9 5.1E-21 1.7E-25 162.0 17.0 200 34-238 33-239 (285)
33 2r9u_A Variable lymphocyte rec 99.9 1.7E-21 5.7E-26 153.6 13.0 116 20-141 3-120 (174)
34 2ifg_A High affinity nerve gro 99.9 7.5E-21 2.6E-25 165.4 16.2 224 23-254 1-253 (347)
35 2z62_A TOLL-like receptor 4, v 99.9 6.6E-21 2.3E-25 160.6 14.9 198 35-238 30-238 (276)
36 2z63_A TOLL-like receptor 4, v 99.9 5.9E-21 2E-25 176.1 15.7 185 26-217 2-193 (570)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.7E-21 3E-25 175.3 15.4 159 21-187 22-181 (562)
38 2z81_A CD282 antigen, TOLL-lik 99.8 4.4E-21 1.5E-25 176.3 13.0 157 22-190 3-163 (549)
39 3rfs_A Internalin B, repeat mo 99.8 2.4E-20 8E-25 157.1 13.4 172 35-213 43-217 (272)
40 1p9a_G Platelet glycoprotein I 99.8 3.9E-20 1.3E-24 157.3 14.6 156 36-197 58-216 (290)
41 3rfs_A Internalin B, repeat mo 99.8 4.7E-20 1.6E-24 155.3 14.3 158 34-194 64-224 (272)
42 2xwt_C Thyrotropin receptor; s 99.8 1.9E-20 6.5E-25 154.5 11.4 180 34-219 32-223 (239)
43 1xku_A Decorin; proteoglycan, 99.8 2E-19 7E-24 155.3 17.2 177 35-218 102-280 (330)
44 3zyi_A Leucine-rich repeat-con 99.8 1.9E-19 6.4E-24 162.1 16.7 177 34-215 76-280 (452)
45 3o6n_A APL1; leucine-rich repe 99.8 1.6E-19 5.3E-24 159.5 15.0 135 35-171 47-186 (390)
46 3j0a_A TOLL-like receptor 5; m 99.8 1.6E-19 5.3E-24 174.4 15.6 159 26-192 1-165 (844)
47 3zyj_A Leucine-rich repeat-con 99.8 3.5E-19 1.2E-23 159.8 16.7 154 36-192 91-272 (440)
48 2xot_A Amphoterin-induced prot 99.8 3.2E-20 1.1E-24 162.5 9.6 160 35-197 41-210 (361)
49 4g8a_A TOLL-like receptor 4; l 99.8 1.6E-19 5.5E-24 168.0 14.1 159 34-194 53-220 (635)
50 2ft3_A Biglycan; proteoglycan, 99.8 2.9E-19 9.9E-24 154.5 14.1 175 35-217 104-280 (332)
51 3oja_B Anopheles plasmodium-re 99.8 3.5E-19 1.2E-23 165.8 15.2 134 36-171 54-192 (597)
52 1ogq_A PGIP-2, polygalacturona 99.8 2E-19 6.7E-24 154.5 12.1 196 34-235 51-255 (313)
53 3o6n_A APL1; leucine-rich repe 99.8 7.6E-19 2.6E-23 155.0 15.8 105 35-141 71-180 (390)
54 1ogq_A PGIP-2, polygalacturona 99.8 3.7E-19 1.3E-23 152.8 13.4 176 54-236 101-280 (313)
55 2id5_A Lingo-1, leucine rich r 99.8 5.5E-19 1.9E-23 159.9 14.9 156 34-192 33-193 (477)
56 2v9t_B SLIT homolog 2 protein 99.8 6.6E-19 2.3E-23 143.8 13.6 130 34-165 33-167 (220)
57 2z7x_B TOLL-like receptor 1, v 99.8 8.2E-19 2.8E-23 160.4 14.2 146 35-187 2-150 (520)
58 2v70_A SLIT-2, SLIT homolog 2 99.8 1.2E-18 4.1E-23 142.2 13.6 130 35-166 34-169 (220)
59 3oja_B Anopheles plasmodium-re 99.8 1.3E-18 4.3E-23 162.0 15.5 105 35-141 77-186 (597)
60 4fcg_A Uncharacterized protein 99.8 7.2E-19 2.5E-23 152.0 12.5 197 33-239 81-292 (328)
61 3e6j_A Variable lymphocyte rec 99.8 2E-18 6.7E-23 141.8 13.9 131 34-166 41-175 (229)
62 2z66_A Variable lymphocyte rec 99.8 6.5E-19 2.2E-23 150.4 11.2 198 35-238 54-262 (306)
63 3t6q_A CD180 antigen; protein- 99.8 2E-18 7E-23 160.5 14.9 153 35-190 35-194 (606)
64 2wfh_A SLIT homolog 2 protein 99.8 1.5E-18 5.2E-23 138.8 11.9 134 57-198 13-148 (193)
65 3vq2_A TLR4, TOLL-like recepto 99.8 2.2E-18 7.5E-23 160.2 13.6 175 34-213 33-216 (606)
66 2o6s_A Variable lymphocyte rec 99.8 6.9E-18 2.4E-22 136.2 14.5 130 34-165 29-163 (208)
67 4fcg_A Uncharacterized protein 99.8 2.3E-18 8E-23 148.8 12.5 192 34-233 105-310 (328)
68 3cvr_A Invasion plasmid antige 99.8 4.6E-18 1.6E-22 156.9 14.6 178 34-238 60-244 (571)
69 1w8a_A SLIT protein; signaling 99.8 2.9E-18 9.7E-23 137.0 11.4 135 57-198 11-148 (192)
70 1h6u_A Internalin H; cell adhe 99.8 1.5E-17 5.2E-22 142.4 15.3 164 35-215 43-209 (308)
71 1wwl_A Monocyte differentiatio 99.8 1.2E-18 4.2E-23 149.4 8.1 170 36-214 98-287 (312)
72 2z63_A TOLL-like receptor 4, v 99.7 7.7E-18 2.6E-22 155.2 13.5 171 35-211 30-210 (570)
73 1ziw_A TOLL-like receptor 3; i 99.7 1.2E-17 4.1E-22 157.3 14.6 157 34-192 26-188 (680)
74 3rgz_A Protein brassinosteroid 99.7 2E-17 6.9E-22 158.1 16.2 126 36-163 421-551 (768)
75 2o6r_A Variable lymphocyte rec 99.7 9.4E-18 3.2E-22 132.0 11.3 136 56-197 9-146 (177)
76 3rgz_A Protein brassinosteroid 99.7 1.3E-17 4.4E-22 159.5 13.5 200 35-240 444-720 (768)
77 1wwl_A Monocyte differentiatio 99.7 4.6E-18 1.6E-22 145.8 9.3 172 34-215 122-310 (312)
78 3o53_A Protein LRIM1, AGAP0063 99.7 1.3E-17 4.6E-22 143.2 11.9 149 35-188 101-250 (317)
79 4ay9_X Follicle-stimulating ho 99.7 2.2E-17 7.4E-22 143.9 12.9 179 34-218 31-219 (350)
80 3v47_A TOLL-like receptor 5B a 99.7 1.7E-17 5.7E-22 149.1 12.2 141 54-197 275-417 (455)
81 4eco_A Uncharacterized protein 99.7 3.5E-17 1.2E-21 153.4 14.0 198 35-239 379-602 (636)
82 3oja_A Leucine-rich immune mol 99.7 1.3E-17 4.4E-22 151.7 10.6 176 35-220 36-233 (487)
83 1h6u_A Internalin H; cell adhe 99.7 4.4E-17 1.5E-21 139.5 13.0 165 34-215 64-231 (308)
84 1h6t_A Internalin B; cell adhe 99.7 4.5E-17 1.5E-21 138.4 12.9 165 35-215 48-214 (291)
85 3o53_A Protein LRIM1, AGAP0063 99.7 1.7E-17 5.8E-22 142.6 9.7 168 35-214 60-250 (317)
86 4eco_A Uncharacterized protein 99.7 2.3E-17 7.9E-22 154.6 11.3 152 35-192 307-474 (636)
87 2z81_A CD282 antigen, TOLL-lik 99.7 2.3E-17 7.9E-22 151.5 11.0 153 34-189 27-186 (549)
88 3oja_A Leucine-rich immune mol 99.7 3.9E-17 1.3E-21 148.5 12.0 148 36-188 102-250 (487)
89 3cvr_A Invasion plasmid antige 99.7 1.2E-16 4.2E-21 147.3 14.9 156 34-214 81-243 (571)
90 4glp_A Monocyte differentiatio 99.7 1.9E-17 6.5E-22 141.8 8.9 173 35-214 93-285 (310)
91 4ezg_A Putative uncharacterize 99.7 7.5E-17 2.6E-21 129.1 11.1 143 35-187 46-193 (197)
92 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 3.2E-16 1.1E-20 144.7 16.6 170 36-213 334-509 (562)
93 2z7x_B TOLL-like receptor 1, v 99.7 2.3E-16 7.9E-21 144.1 15.4 172 35-214 304-481 (520)
94 3g06_A SSPH2 (leucine-rich rep 99.7 6.8E-17 2.3E-21 150.6 12.0 127 22-165 30-156 (622)
95 2ell_A Acidic leucine-rich nuc 99.7 9.3E-17 3.2E-21 125.2 10.3 133 51-189 21-161 (168)
96 1xeu_A Internalin C; cellular 99.7 1.1E-16 3.8E-21 134.1 11.4 144 34-191 42-188 (263)
97 2ell_A Acidic leucine-rich nuc 99.7 6.9E-17 2.3E-21 125.9 9.5 130 35-168 26-165 (168)
98 4glp_A Monocyte differentiatio 99.7 3.7E-17 1.3E-21 140.0 8.3 170 35-214 119-307 (310)
99 1xeu_A Internalin C; cellular 99.7 4.6E-16 1.6E-20 130.3 13.6 165 36-216 22-187 (263)
100 4ecn_A Leucine-rich repeat pro 99.7 3.3E-16 1.1E-20 150.8 14.4 196 35-238 621-841 (876)
101 3g39_A Variable lymphocyte rec 99.7 2.5E-16 8.7E-21 123.2 10.8 106 56-166 11-118 (170)
102 3j0a_A TOLL-like receptor 5; m 99.7 9.7E-16 3.3E-20 147.9 16.5 106 35-142 268-378 (844)
103 2r9u_A Variable lymphocyte rec 99.7 4.2E-16 1.4E-20 122.5 10.8 106 57-167 15-122 (174)
104 1h6t_A Internalin B; cell adhe 99.7 1E-15 3.5E-20 130.0 13.7 145 34-191 69-216 (291)
105 1m9s_A Internalin B; cell inva 99.7 4.8E-16 1.7E-20 144.5 12.4 165 34-214 44-210 (605)
106 4fmz_A Internalin; leucine ric 99.7 5.7E-16 2E-20 134.3 12.1 168 35-216 157-326 (347)
107 4ezg_A Putative uncharacterize 99.7 8.4E-16 2.9E-20 123.0 11.8 148 54-214 44-194 (197)
108 4ecn_A Leucine-rich repeat pro 99.7 5.5E-16 1.9E-20 149.3 12.6 191 35-231 550-783 (876)
109 1a9n_A U2A', U2A'; complex (nu 99.6 3.4E-16 1.2E-20 123.0 6.4 127 54-186 19-151 (176)
110 3bz5_A Internalin-J, INLJ; leu 99.6 1.1E-14 3.6E-19 131.4 16.7 96 35-141 44-142 (457)
111 4b8c_D Glucose-repressible alc 99.6 1.5E-16 5.1E-21 151.1 4.4 132 54-190 224-356 (727)
112 2je0_A Acidic leucine-rich nuc 99.6 8.9E-16 3E-20 117.2 8.0 109 54-167 17-130 (149)
113 4fmz_A Internalin; leucine ric 99.6 1.2E-14 4E-19 126.0 16.0 146 34-190 45-192 (347)
114 1a9n_A U2A', U2A'; complex (nu 99.6 9.5E-16 3.2E-20 120.5 8.2 127 35-165 21-155 (176)
115 3bz5_A Internalin-J, INLJ; leu 99.6 1.4E-14 4.8E-19 130.6 16.0 182 34-239 65-248 (457)
116 1o6v_A Internalin A; bacterial 99.6 7.9E-15 2.7E-19 132.4 14.4 162 36-213 202-365 (466)
117 2je0_A Acidic leucine-rich nuc 99.6 5.8E-16 2E-20 118.2 5.6 121 35-159 19-149 (149)
118 1o6v_A Internalin A; bacterial 99.6 8.3E-15 2.8E-19 132.2 13.1 165 35-215 223-389 (466)
119 3g06_A SSPH2 (leucine-rich rep 99.6 4.5E-14 1.5E-18 131.6 17.1 55 35-96 63-117 (622)
120 1jl5_A Outer protein YOPM; leu 99.6 8.1E-14 2.8E-18 125.5 17.9 162 36-214 74-250 (454)
121 1m9s_A Internalin B; cell inva 99.6 1.2E-14 4E-19 135.3 12.1 182 39-237 27-210 (605)
122 1jl5_A Outer protein YOPM; leu 99.6 1E-13 3.5E-18 124.8 17.5 137 36-189 114-251 (454)
123 4b8c_D Glucose-repressible alc 99.5 6.5E-15 2.2E-19 139.9 6.5 151 35-194 175-335 (727)
124 2ifg_A High affinity nerve gro 99.5 5.2E-14 1.8E-18 122.0 10.2 104 58-166 12-119 (347)
125 3sb4_A Hypothetical leucine ri 99.5 9.7E-14 3.3E-18 119.7 11.5 154 54-215 49-311 (329)
126 1dce_A Protein (RAB geranylger 99.5 5.9E-14 2E-18 129.7 9.7 107 81-192 442-550 (567)
127 3sb4_A Hypothetical leucine ri 99.5 3.7E-13 1.3E-17 116.0 13.1 154 35-194 103-316 (329)
128 1dce_A Protein (RAB geranylger 99.4 2.8E-13 9.5E-18 125.1 10.7 118 43-169 433-552 (567)
129 3goz_A Leucine-rich repeat-con 99.4 5.8E-14 2E-18 122.6 3.2 102 36-139 25-151 (362)
130 3goz_A Leucine-rich repeat-con 99.4 3.6E-14 1.2E-18 123.9 1.6 176 38-215 3-210 (362)
131 2ast_B S-phase kinase-associat 99.4 1.6E-13 5.6E-18 118.1 4.2 170 35-211 72-257 (336)
132 1ds9_A Outer arm dynein; leuci 99.4 3.5E-15 1.2E-19 119.4 -7.0 117 44-166 36-156 (198)
133 2ast_B S-phase kinase-associat 99.3 2.8E-13 9.7E-18 116.6 1.9 173 34-211 94-282 (336)
134 2ca6_A RAN GTPase-activating p 99.3 1.3E-13 4.4E-18 121.3 -0.9 132 54-188 94-257 (386)
135 3rfe_A Platelet glycoprotein I 99.3 4.8E-12 1.6E-16 94.3 7.4 66 22-93 1-68 (130)
136 1ds9_A Outer arm dynein; leuci 99.3 1E-14 3.6E-19 116.7 -8.1 129 54-190 23-155 (198)
137 2ca6_A RAN GTPase-activating p 99.3 2.7E-13 9.3E-18 119.3 0.0 40 78-117 92-135 (386)
138 4fdw_A Leucine rich hypothetic 99.3 4.9E-11 1.7E-15 105.6 13.2 141 35-183 159-308 (401)
139 4fdw_A Leucine rich hypothetic 99.3 1.5E-10 5E-15 102.5 15.5 143 35-187 137-283 (401)
140 1z7x_W Ribonuclease inhibitor; 99.1 1.2E-12 4.2E-17 117.4 -3.3 151 35-188 172-354 (461)
141 1z7x_W Ribonuclease inhibitor; 99.0 2E-11 6.9E-16 109.4 0.3 178 35-215 5-213 (461)
142 3un9_A NLR family member X1; l 98.9 2.3E-10 7.9E-15 100.2 -0.2 108 55-164 102-225 (372)
143 3un9_A NLR family member X1; l 98.8 7.4E-11 2.5E-15 103.4 -4.2 161 54-215 72-253 (372)
144 4h09_A Hypothetical leucine ri 98.6 2.2E-07 7.6E-12 81.1 10.7 124 54-184 217-342 (379)
145 3ogk_B Coronatine-insensitive 98.4 1.1E-07 3.8E-12 87.6 3.9 126 54-183 112-251 (592)
146 4h09_A Hypothetical leucine ri 98.4 2.4E-06 8.4E-11 74.4 11.8 114 54-173 240-355 (379)
147 3rw6_A Nuclear RNA export fact 98.3 2.6E-07 8.8E-12 76.9 3.4 86 78-164 139-234 (267)
148 4gt6_A Cell surface protein; l 98.3 5.1E-06 1.8E-10 72.9 10.5 116 64-186 251-368 (394)
149 4fs7_A Uncharacterized protein 98.2 1.1E-05 3.7E-10 70.8 12.5 108 69-185 267-376 (394)
150 4fs7_A Uncharacterized protein 98.2 4E-06 1.4E-10 73.6 9.7 64 45-112 59-125 (394)
151 4gt6_A Cell surface protein; l 98.2 5.2E-06 1.8E-10 72.9 10.3 123 82-212 244-368 (394)
152 1io0_A Tropomodulin; LRR prote 98.2 2.1E-07 7.1E-12 73.3 0.8 108 54-163 36-164 (185)
153 3ogk_B Coronatine-insensitive 98.2 9.9E-07 3.4E-11 81.2 4.0 121 35-158 166-326 (592)
154 3rw6_A Nuclear RNA export fact 98.1 7.4E-07 2.5E-11 74.1 2.1 63 78-140 168-234 (267)
155 2p1m_B Transport inhibitor res 98.1 9E-07 3.1E-11 81.5 1.4 155 54-213 338-518 (594)
156 2p1m_B Transport inhibitor res 98.0 7.9E-07 2.7E-11 81.9 0.4 38 125-162 455-493 (594)
157 2ra8_A Uncharacterized protein 97.9 7.9E-06 2.7E-10 71.1 3.8 154 54-214 139-320 (362)
158 1io0_A Tropomodulin; LRR prote 97.9 4.4E-06 1.5E-10 65.6 1.9 111 78-188 34-164 (185)
159 2ra8_A Uncharacterized protein 97.8 1.3E-05 4.4E-10 69.7 4.4 129 54-188 172-320 (362)
160 3rfe_A Platelet glycoprotein I 97.8 3.7E-05 1.3E-09 56.7 6.1 52 108-160 12-65 (130)
161 3e4g_A ATP synthase subunit S, 97.4 5.9E-05 2E-09 58.5 2.6 34 127-160 115-149 (176)
162 3e4g_A ATP synthase subunit S, 97.3 0.00023 7.8E-09 55.2 4.3 91 47-139 52-153 (176)
163 1pgv_A TMD-1, tropomodulin TMD 96.3 0.0017 5.9E-08 51.1 2.3 82 79-160 40-136 (197)
164 1pgv_A TMD-1, tropomodulin TMD 95.7 0.01 3.5E-07 46.7 4.5 107 54-162 41-169 (197)
165 2lz0_A Uncharacterized protein 93.1 0.1 3.5E-06 36.1 4.0 50 63-115 5-54 (100)
166 2lz0_A Uncharacterized protein 85.0 2.2 7.4E-05 29.2 5.7 47 89-136 5-53 (100)
167 3knb_B Obscurin-like protein 1 82.0 0.64 2.2E-05 32.0 2.0 28 176-203 27-54 (107)
168 2yd6_A PTPRD protein; hydrolas 81.7 0.95 3.2E-05 34.8 3.1 27 177-203 123-149 (212)
169 1he7_A High affinity nerve gro 77.4 1.4 4.7E-05 31.7 2.5 28 177-204 15-42 (126)
170 2v9t_A Roundabout homolog 1; s 74.5 2.6 8.9E-05 28.9 3.3 28 176-203 23-50 (117)
171 4fom_A Poliovirus receptor-rel 73.8 1.4 4.9E-05 35.9 2.1 25 177-201 227-252 (308)
172 3knb_A Titin; IG-like, titin, 73.5 1.6 5.4E-05 29.5 1.9 28 176-203 19-46 (100)
173 4fqp_A Poliovirus receptor; im 73.3 2.5 8.6E-05 34.5 3.5 78 177-266 232-311 (313)
174 2cqv_A MLCK, myosin light chai 70.9 4.4 0.00015 27.6 3.8 28 176-203 21-48 (114)
175 1wit_A Twitchin 18TH IGSF modu 70.8 2.1 7.4E-05 27.9 2.0 25 176-200 16-40 (93)
176 2lu7_A Obscurin-like protein 1 70.1 6.4 0.00022 25.5 4.3 26 177-203 11-36 (84)
177 2e7c_A Myosin-binding protein 70.0 4.2 0.00014 27.9 3.6 28 176-203 38-65 (118)
178 2edj_A Roundabout homolog 2; K 68.5 5.4 0.00018 26.2 3.8 28 176-203 22-49 (100)
179 2yr3_A Myosin light chain kina 66.8 3.7 0.00013 27.0 2.6 28 176-203 25-52 (99)
180 2eo9_A Roundabout homolog 1; b 66.3 9.1 0.00031 26.0 4.7 28 176-203 22-49 (118)
181 2kkq_A Myotilin; unknown funct 65.3 5.6 0.00019 27.3 3.4 27 176-202 29-55 (116)
182 2dm2_A Palladin; beta-sandwich 64.1 16 0.00053 24.4 5.5 28 176-203 22-49 (110)
183 3kvq_A Vascular endothelial gr 63.5 6 0.00021 26.3 3.2 28 176-203 24-51 (108)
184 1wwb_X Protein (brain derived 63.3 3.3 0.00011 27.9 1.8 27 177-203 16-42 (103)
185 1gxe_A Myosin binding protein 63.3 3.6 0.00012 29.8 2.1 25 176-200 32-56 (139)
186 2wim_A N-CAM 2, NCAM2, neural 62.8 9.7 0.00033 30.3 4.9 83 176-266 208-291 (291)
187 4i0k_A CD276 antigen; immunogl 61.7 3.5 0.00012 31.5 1.9 89 177-265 125-221 (222)
188 2yd1_A Tyrosine-protein phosph 59.7 6.9 0.00024 29.7 3.3 27 177-203 125-151 (212)
189 2dm3_A KIAA0992 protein, palla 57.5 15 0.0005 24.4 4.4 25 177-201 24-48 (110)
190 2yd9_A Receptor-type tyrosine- 57.3 5.1 0.00017 32.4 2.3 28 176-203 219-246 (304)
191 2kdg_A Myotilin; immonoglobuli 56.9 5.6 0.00019 26.0 2.1 26 177-202 20-45 (100)
192 4frw_A Poliovirus receptor-rel 56.8 15 0.00052 27.2 4.9 25 177-201 133-157 (218)
193 4fa8_A Secreted protein BARF1; 56.1 7.8 0.00027 29.8 3.1 25 176-200 120-144 (203)
194 1fhg_A Telokin; immunoglobulin 55.0 6 0.00021 28.7 2.1 28 176-203 55-82 (154)
195 1wwc_A Protein (NT-3 growth fa 54.2 4.2 0.00015 27.9 1.1 74 178-254 21-105 (118)
196 2cr6_A KIAA1556 protein, obscu 53.7 18 0.0006 24.5 4.4 28 176-203 27-54 (115)
197 1jbj_A CD3 epsilon and gamma e 53.1 23 0.00079 26.3 5.3 26 176-204 121-146 (186)
198 4f80_A Butyrophilin subfamily 51.6 16 0.00055 27.9 4.3 23 177-199 133-156 (226)
199 3qp3_A Titin; I-SET IG-like, s 50.9 11 0.00038 24.7 2.8 27 176-202 22-48 (103)
200 2ec8_A MAST/stem cell growth f 50.7 5.9 0.0002 35.0 1.7 22 181-202 425-446 (524)
201 1nct_A Titin; cell adhesion, g 50.3 19 0.00064 24.0 4.0 27 176-202 28-54 (106)
202 2ens_A Advanced glycosylation 50.2 47 0.0016 21.2 6.6 27 176-202 24-50 (96)
203 3irg_B Obscurin-like protein 1 49.8 12 0.00041 24.7 2.9 27 176-202 27-53 (107)
204 3caf_A Fibroblast growth facto 47.9 8.1 0.00028 25.2 1.7 28 176-203 22-49 (100)
205 2cr3_A Basic fibroblast growth 47.5 16 0.00056 23.8 3.2 27 176-203 17-43 (99)
206 1g1c_A Immunoglobulin-like dom 47.5 7.6 0.00026 25.3 1.5 27 176-202 19-45 (99)
207 2v9r_A Roundabout homolog 1; p 44.6 15 0.00051 27.4 3.0 76 176-254 125-206 (212)
208 3jz7_A MCAR, CAR, coxsackievir 44.3 17 0.00057 27.1 3.2 25 175-199 134-159 (214)
209 1u2h_A APEG-1, aortic preferen 44.2 16 0.00055 23.6 2.8 27 176-202 19-45 (99)
210 3irg_A Titin; IG-like, titin, 44.1 11 0.00036 24.4 1.8 27 177-203 20-46 (100)
211 3m45_A Cell adhesion molecule 44.1 19 0.00064 23.6 3.1 25 176-200 20-44 (108)
212 3rbs_A Myomesin-1; immunoglobu 44.0 12 0.0004 28.7 2.3 28 176-203 130-158 (207)
213 2r15_A Myomesin-1; sarcomeric 42.9 12 0.00039 28.1 2.1 26 177-202 132-157 (212)
214 3s35_X Vascular endothelial gr 42.1 11 0.00037 25.8 1.6 25 177-201 23-49 (122)
215 2c5d_C AXL oncogene, tyrosine- 42.0 30 0.001 25.4 4.4 28 177-204 121-149 (195)
216 2bk8_A Connectin, M1, titin he 41.6 27 0.00094 22.4 3.6 26 176-201 15-41 (97)
217 1gsm_A Madcam-1, mucosal addre 41.2 25 0.00086 27.3 3.8 81 176-258 21-103 (210)
218 2ckn_A Basic fibroblast growth 41.0 14 0.00048 23.9 2.0 26 176-202 23-48 (95)
219 4hwu_A Fibroblast growth facto 40.7 14 0.00048 23.8 2.0 24 176-201 15-38 (95)
220 2vr9_A Roundabout 1, ROBO; imm 39.3 23 0.00079 26.6 3.3 29 176-204 122-151 (217)
221 3qs9_E FL cytokine receptor; i 38.0 13 0.00045 33.3 1.9 78 177-255 341-419 (527)
222 2lvc_A Obscurin-like protein 1 37.1 46 0.0016 21.5 4.1 27 176-203 20-46 (91)
223 3ejj_X Macrophage colony-stimu 36.7 21 0.00073 28.1 2.9 28 176-203 200-228 (289)
224 3v2a_R Vascular endothelial gr 36.1 7.6 0.00026 36.1 0.0 77 177-256 681-762 (772)
225 2y25_A Myomesin; structural pr 36.0 22 0.00074 28.5 2.8 28 176-203 236-263 (317)
226 3b43_A Titin; I-SET IG fold, e 35.2 22 0.00075 31.9 2.9 79 176-255 398-481 (570)
227 1gl4_B Basement membrane-speci 35.2 23 0.00078 22.9 2.4 24 176-199 24-48 (98)
228 2cry_A KIN of IRRE-like protei 35.0 6.5 0.00022 27.1 -0.5 27 176-202 27-54 (122)
229 2yuz_A Myosin-binding protein 34.6 27 0.00091 23.0 2.7 26 176-203 21-46 (100)
230 3kld_A Contactin 4, axcam, BIG 34.2 13 0.00044 31.3 1.2 28 176-203 309-336 (384)
231 1rhf_A Tyrosine-protein kinase 34.1 38 0.0013 24.4 3.7 27 177-203 113-140 (182)
232 2oz4_A Intercellular adhesion 33.9 13 0.00045 29.2 1.1 26 176-201 199-224 (265)
233 2iep_A Muscle-specific kinase 33.4 26 0.00088 25.6 2.7 26 177-202 115-140 (192)
234 3b43_A Titin; I-SET IG fold, e 33.4 23 0.00079 31.7 2.8 80 176-256 211-295 (570)
235 3kld_A Contactin 4, axcam, BIG 33.0 27 0.00094 29.2 3.1 78 176-254 219-298 (384)
236 1nbq_A JAM, junctional adhesio 32.9 1.2E+02 0.004 22.0 6.5 28 176-203 121-149 (209)
237 3puc_A Titin; I-SET IG-like do 31.9 33 0.0011 21.9 2.7 25 177-201 21-45 (99)
238 3grw_A Fibroblast growth facto 31.7 19 0.00066 27.5 1.8 22 177-198 129-150 (241)
239 2ljs_A Trypsin inhibitor 3; be 31.0 11 0.00038 18.9 0.1 10 21-30 15-24 (30)
240 3s97_C Contactin-1; carbonic a 29.7 21 0.00073 26.2 1.6 26 176-201 127-152 (201)
241 1vca_A VCAM-D1,2, human vascul 29.1 48 0.0016 24.9 3.6 23 176-198 15-37 (202)
242 3mtr_A N-CAM-1, NCAM-1, neural 28.7 25 0.00086 26.5 1.9 28 176-203 32-59 (215)
243 3rbg_A Cytotoxic and regulator 28.5 33 0.0011 23.4 2.4 25 176-200 15-39 (124)
244 1f97_A Junction adhesion molec 28.5 1.5E+02 0.005 21.5 6.4 25 177-201 119-144 (212)
245 3mjg_X Beta-type platelet-deri 28.4 41 0.0014 26.5 3.3 26 175-200 194-219 (289)
246 2wv3_A Neuroplastin; igcam, me 28.4 53 0.0018 23.9 3.7 23 176-198 106-128 (190)
247 3bfo_A Mucosa-associated lymph 28.3 53 0.0018 20.7 3.3 26 176-201 17-42 (91)
248 2wv3_A Neuroplastin; igcam, me 28.0 45 0.0016 24.3 3.3 27 177-203 18-46 (190)
249 2rik_A Titin; I-SET IG fold, p 27.2 38 0.0013 26.6 2.8 27 176-202 19-45 (284)
250 3b5h_A Cervical EMMPRIN, HAB18 26.6 58 0.002 23.5 3.6 29 176-204 12-42 (184)
251 2j8h_A Titin, connectin; cardi 25.7 51 0.0018 24.0 3.2 27 177-203 119-145 (197)
252 2vr9_A Roundabout 1, ROBO; imm 25.3 1.1E+02 0.0037 22.6 5.1 28 176-203 23-50 (217)
253 2v5m_A Dscam; neurobiology SPL 24.9 29 0.00098 28.8 1.7 28 176-203 321-348 (388)
254 2v44_A NCAM2, neural cell adhe 24.7 89 0.0031 22.4 4.4 28 176-203 110-137 (189)
255 1x44_A Myosin-binding protein 24.6 75 0.0026 20.5 3.6 26 176-202 21-46 (103)
256 1h9h_I EETI-II, trypsin inhibi 24.4 24 0.00083 18.7 0.7 11 21-31 13-23 (36)
257 1z7z_I Intercellular adhesion 24.4 27 0.00093 29.8 1.5 26 176-201 384-409 (450)
258 3uto_A Twitchin; kinase, muscl 24.0 37 0.0013 30.8 2.4 29 175-203 495-523 (573)
259 2e6p_A Obscurin-like protein 1 23.8 1.1E+02 0.0039 19.5 4.4 26 176-202 24-49 (104)
260 1qz1_A Neural cell adhesion mo 22.7 39 0.0013 26.6 2.0 29 175-203 209-237 (291)
261 2edn_A Myosin-binding protein 21.8 79 0.0027 21.9 3.3 24 176-199 26-52 (118)
262 2edk_A Myosin-binding protein 21.5 98 0.0033 19.8 3.7 27 176-203 22-48 (101)
263 2dav_A SLOW MYBP-C, myosin-bin 21.3 1.2E+02 0.004 21.3 4.1 24 176-199 21-47 (126)
264 2rik_A Titin; I-SET IG fold, p 21.1 75 0.0026 24.7 3.5 27 176-202 206-232 (284)
265 3qs7_E FL cytokine receptor; i 20.9 59 0.002 27.9 3.0 27 175-201 61-87 (423)
266 2ny1_B T-cell surface glycopro 20.8 64 0.0022 23.3 2.8 25 176-200 111-135 (184)
267 1hng_A CD2; T lymphocyte adhes 20.8 47 0.0016 24.3 2.0 24 179-202 112-135 (176)
268 1bih_A Hemolin; insect immunit 20.6 45 0.0015 27.6 2.1 29 175-203 322-350 (395)
269 3qs9_E FL cytokine receptor; i 20.4 31 0.001 30.8 1.0 19 181-199 426-444 (527)
270 3qs7_E FL cytokine receptor; i 20.4 33 0.0011 29.5 1.2 28 176-203 340-367 (423)
271 3p3y_A Neurofascin; IG domains 20.3 64 0.0022 26.7 3.1 29 175-203 235-263 (404)
272 3cx2_A Myosin-binding protein 20.2 97 0.0033 20.2 3.5 25 176-200 18-45 (108)
273 3sbw_C Programmed cell death 1 20.1 48 0.0016 24.8 2.0 23 177-199 131-153 (222)
No 1
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.97 E-value=1.4e-29 Score=207.36 Aligned_cols=171 Identities=20% Similarity=0.413 Sum_probs=160.6
Q ss_pred CCCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhh
Q psy14765 20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA 99 (269)
Q Consensus 20 ~~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~ 99 (269)
+.+||..|+|. ...|+|++++++++|..++++++.|++++|.|+.+++..|. ++++|+.|++++|+|+.+.+.+
T Consensus 2 ~~~CP~~C~C~----~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~--~l~~L~~L~Ls~N~i~~~~~~~ 75 (220)
T 2v9t_B 2 SLHCPAACTCS----NNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFS--PYKKLRRIDLSNNQISELAPDA 75 (220)
T ss_dssp CCCSCTTSEEE----TTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSST--TCTTCCEEECCSSCCCEECTTT
T ss_pred CCCCCCCCEEC----CCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhh--CCCCCCEEECCCCcCCCcCHHH
Confidence 45899999998 68999999999999999999999999999999999999998 8999999999999999999999
Q ss_pred hcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCC
Q psy14765 100 FRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPG 177 (269)
Q Consensus 100 ~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l 177 (269)
|.++++|++|+|++|.|+.++...| +++|+.|+|++|+|+++.+..|..+++|+.|+|++|++++++++.|..++. +
T Consensus 76 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L 154 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA-I 154 (220)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT-C
T ss_pred hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCC-C
Confidence 9999999999999999999999887 999999999999999999999999999999999999999999998988876 7
Q ss_pred CeeEEeeccccCCCcccccee
Q psy14765 178 SNLTLDCRVQSATPCRIMWSI 198 (269)
Q Consensus 178 ~~l~l~~n~~~~~~~~~~~~~ 198 (269)
+.+.+++|++. +.|.+.|+.
T Consensus 155 ~~L~L~~N~~~-c~c~l~~l~ 174 (220)
T 2v9t_B 155 QTMHLAQNPFI-CDCHLKWLA 174 (220)
T ss_dssp CEEECCSSCEE-CSGGGHHHH
T ss_pred CEEEeCCCCcC-CCCccHHHH
Confidence 99999999965 467888874
No 2
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.96 E-value=4.6e-28 Score=198.34 Aligned_cols=170 Identities=28% Similarity=0.485 Sum_probs=156.5
Q ss_pred CCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccc-cccccccCCCcccEEEcccccccccchhh
Q psy14765 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQ-KEIFLQMGITNIQKLYLRKCKLEFVDDRA 99 (269)
Q Consensus 21 ~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~-~~~f~~~~l~~L~~L~L~~N~i~~~~~~~ 99 (269)
.+||..|+|. .++++|+++.++++|..++..++.|++++|.|+.++ ...|. ++++|+.|++++|+|+.+++.+
T Consensus 3 ~~CP~~C~C~----~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~--~l~~L~~L~L~~N~i~~i~~~~ 76 (220)
T 2v70_A 3 LACPEKCRCE----GTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFK--KLPQLRKINFSNNKITDIEEGA 76 (220)
T ss_dssp -CCCTTCEEE----TTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGG--GCTTCCEEECCSSCCCEECTTT
T ss_pred CCCCCCCEEC----CCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhc--cCCCCCEEECCCCcCCEECHHH
Confidence 5799999998 579999999999999999999999999999999884 56787 8999999999999999999999
Q ss_pred hcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCC
Q psy14765 100 FRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPG 177 (269)
Q Consensus 100 ~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l 177 (269)
|.++++|++|+|++|.++.++...| +++|+.|+|++|+|+++.+..|..+++|+.|+|++|+++++++..|..++. +
T Consensus 77 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L 155 (220)
T 2v70_A 77 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS-L 155 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTT-C
T ss_pred hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCC-C
Confidence 9999999999999999999998877 999999999999999999999999999999999999999999999988876 7
Q ss_pred CeeEEeeccccCCCcccccee
Q psy14765 178 SNLTLDCRVQSATPCRIMWSI 198 (269)
Q Consensus 178 ~~l~l~~n~~~~~~~~~~~~~ 198 (269)
+.+.+++|.+.+ .|.+.|+.
T Consensus 156 ~~L~L~~N~l~c-~c~l~~l~ 175 (220)
T 2v70_A 156 STLNLLANPFNC-NCYLAWLG 175 (220)
T ss_dssp CEEECCSCCEEC-SGGGHHHH
T ss_pred CEEEecCcCCcC-CCchHHHH
Confidence 999999998654 57777763
No 3
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=3.2e-26 Score=205.73 Aligned_cols=186 Identities=27% Similarity=0.503 Sum_probs=163.8
Q ss_pred CCCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhh
Q psy14765 20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA 99 (269)
Q Consensus 20 ~~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~ 99 (269)
+.+||..|.|. .....|+|++++++.+|.+++++++.|++++|+++.+++..|. ++++|++|+|++|+|+.+++.+
T Consensus 32 ~~~Cp~~C~C~--~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~~ 107 (440)
T 3zyj_A 32 AQTCPSVCSCS--NQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFK--HLRHLEILQLSRNHIRTIEIGA 107 (440)
T ss_dssp -CCCCSSSEEC--TTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTS--SCSSCCEEECCSSCCCEECGGG
T ss_pred cccCCCCCEeC--CCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhh--CCCCCCEEECCCCcCCccChhh
Confidence 35899999997 3356899999999999999999999999999999999999998 8999999999999999999999
Q ss_pred hcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccC-CcceeeCcccccccccC
Q psy14765 100 FRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSN-CQIHTIYSEAFYVMVLP 176 (269)
Q Consensus 100 ~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~~ 176 (269)
|.++++|++|+|++|+++.++...| +++|+.|++++|+++.+++..|.++++|+.|++++ |.+..+++..|..+..
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~- 186 (440)
T 3zyj_A 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN- 186 (440)
T ss_dssp GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS-
T ss_pred ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc-
Confidence 9999999999999999999998877 99999999999999999998899999999999998 6788888888888876
Q ss_pred CCeeEEeeccccCCCccccceecccccccccccCcccc
Q psy14765 177 GSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKIN 214 (269)
Q Consensus 177 l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~ 214 (269)
++.+.++.|.+...+. +.....++.+++++|.+.
T Consensus 187 L~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 187 LRYLNLAMCNLREIPN----LTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CCEEECTTSCCSSCCC----CTTCSSCCEEECTTSCCC
T ss_pred cCeecCCCCcCccccc----cCCCcccCEEECCCCccC
Confidence 7888888888776652 233334667777777664
No 4
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.94 E-value=9e-27 Score=204.26 Aligned_cols=170 Identities=26% Similarity=0.407 Sum_probs=152.4
Q ss_pred cccCCCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccc
Q psy14765 17 SVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96 (269)
Q Consensus 17 ~~~~~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~ 96 (269)
+....+||..|.|. .+.++|++++++.+|..++..++.|++++|+|+.+++..|. .++++|+.|+|++|+|+.++
T Consensus 6 ~~~~~~Cp~~C~C~----~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~-~~l~~L~~L~L~~N~i~~i~ 80 (361)
T 2xot_A 6 GRSVVSCPANCLCA----SNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTP-TRLTNLHSLLLSHNHLNFIS 80 (361)
T ss_dssp -CCCTTCCTTCEEE----TTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSS-SCCTTCCEEECCSSCCCEEC
T ss_pred CCcCCCCCCCCEEC----CCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhh-hcccccCEEECCCCcCCccC
Confidence 34456899999998 67999999999999999999999999999999999998872 04799999999999999999
Q ss_pred hhhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCccccc---
Q psy14765 97 DRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY--- 171 (269)
Q Consensus 97 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--- 171 (269)
+.+|.++++|++|+|++|+|+.++...| +++|+.|+|++|+|+++.+..|.++++|+.|+|++|+|+.++...|.
T Consensus 81 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~ 160 (361)
T 2xot_A 81 SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160 (361)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC---
T ss_pred hhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcc
Confidence 9999999999999999999999998877 99999999999999999999999999999999999999999988873
Q ss_pred ccccCCCeeEEeeccccCCCc
Q psy14765 172 VMVLPGSNLTLDCRVQSATPC 192 (269)
Q Consensus 172 ~l~~~l~~l~l~~n~~~~~~~ 192 (269)
.++. ++.++++.|.+...+.
T Consensus 161 ~l~~-L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 161 KLPK-LMLLDLSSNKLKKLPL 180 (361)
T ss_dssp -CTT-CCEEECCSSCCCCCCH
T ss_pred cCCc-CCEEECCCCCCCccCH
Confidence 4554 7888888888877664
No 5
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.94 E-value=2.8e-26 Score=185.75 Aligned_cols=162 Identities=26% Similarity=0.456 Sum_probs=151.7
Q ss_pred CCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcC
Q psy14765 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102 (269)
Q Consensus 23 cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 102 (269)
||..|.|. .+.++|++++++++|..++++++.|++++|.++.+++..|. ++++|++|++++|+++.+++..|..
T Consensus 1 Cp~~C~C~----~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (208)
T 2o6s_A 1 CPSRCSCS----GTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFD--ELTSLTQLYLGGNKLQSLPNGVFNK 74 (208)
T ss_dssp CCTTCEEE----TTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CcCCCEEC----CCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhc--ccccCcEEECCCCccCccChhhcCC
Confidence 99999998 68999999999999999999999999999999999999988 8999999999999999999988999
Q ss_pred CCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCee
Q psy14765 103 VTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNL 180 (269)
Q Consensus 103 l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l 180 (269)
+++|++|++++|.++.++...+ +++|+.|++++|+++++++..|+.+++|+.|++++|.++++++..+..++. ++.+
T Consensus 75 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L 153 (208)
T 2o6s_A 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS-LQYI 153 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT-CCEE
T ss_pred CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCC-ccEE
Confidence 9999999999999999998876 999999999999999999888999999999999999999999988888876 7999
Q ss_pred EEeeccccCCC
Q psy14765 181 TLDCRVQSATP 191 (269)
Q Consensus 181 ~l~~n~~~~~~ 191 (269)
.++.|.+.+..
T Consensus 154 ~l~~N~~~~~~ 164 (208)
T 2o6s_A 154 WLHDNPWDCTC 164 (208)
T ss_dssp ECCSCCBCCCT
T ss_pred EecCCCeecCC
Confidence 99999765543
No 6
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.94 E-value=1.9e-26 Score=192.15 Aligned_cols=187 Identities=23% Similarity=0.432 Sum_probs=166.3
Q ss_pred CCCCC--CeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhh
Q psy14765 22 SCPLG--CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA 99 (269)
Q Consensus 22 ~cp~~--C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~ 99 (269)
+||.. |.|. .+.++++|++++++.+|..++++++.|++++|.++.+++..|. ++++|++|++++|+|+++++..
T Consensus 3 ~Cp~~~gC~C~--~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~ 78 (251)
T 3m19_A 3 TCETVTGCTCN--EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFR--GLTKLTWLNLDYNQLQTLSAGV 78 (251)
T ss_dssp -CHHHHSSEEE--GGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTTT
T ss_pred cCCCCCceEcC--CCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhc--CcccCCEEECCCCcCCccCHhH
Confidence 69977 9996 3457899999999999999999999999999999999999888 8999999999999999999999
Q ss_pred hcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCC
Q psy14765 100 FRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPG 177 (269)
Q Consensus 100 ~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l 177 (269)
|..+++|++|++++|.++.++...| +++|+.|++++|+++++++..|..+++|+.|+|++|+++++++..|..++. +
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L 157 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN-L 157 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-C
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC-C
Confidence 9999999999999999999998877 999999999999999999888999999999999999999999988888876 8
Q ss_pred CeeEEeeccccCCCccccceecccccccccccCccccc
Q psy14765 178 SNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINI 215 (269)
Q Consensus 178 ~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~ 215 (269)
+.++++.|.+...++... .....++.+++.+|.+.-
T Consensus 158 ~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 158 QTLSLSTNQLQSVPHGAF--DRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CEEECCSSCCSCCCTTTT--TTCTTCCEEECCSCCBCT
T ss_pred CEEECCCCcCCccCHHHH--hCCCCCCEEEeeCCceeC
Confidence 999999999888776432 223347888888888753
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=4.2e-26 Score=193.37 Aligned_cols=187 Identities=23% Similarity=0.390 Sum_probs=153.9
Q ss_pred CCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhc
Q psy14765 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101 (269)
Q Consensus 22 ~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~ 101 (269)
+||..|.|... ...+++|++++++.+|.+++++++.|++++|.++.+++..|. .+++|++|++++|.++++.+.+|.
T Consensus 1 ~CP~~C~C~~~-~~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~ 77 (285)
T 1ozn_A 1 PCPGACVCYNE-PKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFR--ACRNLTILWLHSNVLARIDAAAFT 77 (285)
T ss_dssp CCCTTCEEECS-SSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTT
T ss_pred CcCCCceECCC-CCeEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcc--cCCCCCEEECCCCccceeCHhhcC
Confidence 59999999742 247899999999999999999999999999999999998888 889999999999999999888899
Q ss_pred CCCCCCEEEcCCCC-CCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCC
Q psy14765 102 GVTNMDELDLSDNL-LSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGS 178 (269)
Q Consensus 102 ~l~~L~~L~L~~N~-l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~ 178 (269)
++++|++|++++|. ++.+++..+ +++|+.|++++|.++++.+..|.++++|++|++++|.++++++..|..++. ++
T Consensus 78 ~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~ 156 (285)
T 1ozn_A 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN-LT 156 (285)
T ss_dssp TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CC
T ss_pred CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC-cc
Confidence 99999999999997 888866655 888999999999988888888888888888888888888888777777765 68
Q ss_pred eeEEeeccccCCCccccceecccccccccccCcccc
Q psy14765 179 NLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKIN 214 (269)
Q Consensus 179 ~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~ 214 (269)
.+.+++|.+...++.. +.....++.+++.+|.+.
T Consensus 157 ~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 157 HLFLHGNRISSVPERA--FRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp EEECCSSCCCEECTTT--TTTCTTCCEEECCSSCCC
T ss_pred EEECCCCcccccCHHH--hcCccccCEEECCCCccc
Confidence 8888888776655432 112233666666666654
No 8
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=7.7e-26 Score=203.88 Aligned_cols=205 Identities=24% Similarity=0.388 Sum_probs=170.9
Q ss_pred CCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhh
Q psy14765 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF 100 (269)
Q Consensus 21 ~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~ 100 (269)
..||..|.|.. ....|+|++++++.+|.+++++++.|++++|+|+.+++..|. ++++|+.|++++|+|+.+++.+|
T Consensus 44 ~~Cp~~C~C~~--~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~ 119 (452)
T 3zyi_A 44 QNCPSVCSCSN--QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEVGAF 119 (452)
T ss_dssp CCCCTTSEECS--SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTT
T ss_pred CCCCCCCEECC--CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcC--CCCCCCEEECCCCccCCcChhhc
Confidence 58999999973 347899999999999999999999999999999999999998 89999999999999999999999
Q ss_pred cCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccC-CcceeeCcccccccccCC
Q psy14765 101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSN-CQIHTIYSEAFYVMVLPG 177 (269)
Q Consensus 101 ~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~~l 177 (269)
.++++|++|+|++|.++.++...| +++|+.|+|++|+++.+++..|.++++|+.|++++ |.+..+++..|..+.. +
T Consensus 120 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~-L 198 (452)
T 3zyi_A 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN-L 198 (452)
T ss_dssp TTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT-C
T ss_pred cCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC-C
Confidence 999999999999999999998877 99999999999999999998899999999999998 7888898888888876 7
Q ss_pred CeeEEeeccccCCCccccceecccccccccccCcccccc-ccceeecCCCeeeeeecc
Q psy14765 178 SNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIK-EETVLSKDNSYLSVFSGG 234 (269)
Q Consensus 178 ~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~-~~~~~~~~~~~~~~~~~~ 234 (269)
+.+.++.|.+...+. +.....++.+++++|.+... +..+....+...+.+..+
T Consensus 199 ~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 199 KYLNLGMCNIKDMPN----LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp CEEECTTSCCSSCCC----CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred CEEECCCCccccccc----ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence 888888888776642 22333466677777766432 333333343343444333
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=2.4e-25 Score=201.67 Aligned_cols=187 Identities=25% Similarity=0.425 Sum_probs=167.3
Q ss_pred CCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhc
Q psy14765 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101 (269)
Q Consensus 22 ~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~ 101 (269)
+||..|.|. .....|+|++++++.+|..++++++.|++++|+++.+++..|. ++++|++|++++|.|+.+.+.+|.
T Consensus 2 ~Cp~~C~C~--~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~ 77 (477)
T 2id5_A 2 GCPPRCECS--AQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFA--SFPHLEELELNENIVSAVEPGAFN 77 (477)
T ss_dssp CCSTTCEEE--TTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTT
T ss_pred cccCCCeEC--CCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHcc--CCCCCCEEECCCCccCEeChhhhh
Confidence 699999997 3347999999999999999999999999999999999999998 899999999999999999999999
Q ss_pred CCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCe
Q psy14765 102 GVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSN 179 (269)
Q Consensus 102 ~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~ 179 (269)
++++|++|+|++|.++.++...| +++|+.|++++|++.++.+..|..+++|+.|++++|.++.+.+..|..+.. ++.
T Consensus 78 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~ 156 (477)
T 2id5_A 78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS-LEQ 156 (477)
T ss_dssp TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT-CCE
T ss_pred CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCC-CCE
Confidence 99999999999999999998877 999999999999999999999999999999999999999999999988876 899
Q ss_pred eEEeeccccCCCccccceecccccccccccCccccc
Q psy14765 180 LTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINI 215 (269)
Q Consensus 180 l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~ 215 (269)
+.++.|.+...++.. +.....++.+++.+|.+..
T Consensus 157 L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 157 LTLEKCNLTSIPTEA--LSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp EEEESCCCSSCCHHH--HTTCTTCCEEEEESCCCCE
T ss_pred EECCCCcCcccChhH--hcccCCCcEEeCCCCcCcE
Confidence 999999888776532 2223347777777776643
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=3.2e-25 Score=186.69 Aligned_cols=206 Identities=21% Similarity=0.345 Sum_probs=173.9
Q ss_pred CCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCC
Q psy14765 24 PLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103 (269)
Q Consensus 24 p~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 103 (269)
+..|.|. ...+.|+|++++++.+|..++++++.|++++|+++.+++..|. ++++|++|++++|+|+.+++..|.++
T Consensus 9 ~~~C~c~--~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~i~~~~~~~l 84 (270)
T 2o6q_A 9 GGVCSCN--NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFH--RLTKLRLLYLNDNKLQTLPAGIFKEL 84 (270)
T ss_dssp TCSBEEE--TTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSS--SCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred CCCCEeC--CCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhc--CCCCCCEEECCCCccCeeChhhhcCC
Confidence 3568887 4467999999999999999999999999999999999998898 89999999999999999999999999
Q ss_pred CCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeE
Q psy14765 104 TNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLT 181 (269)
Q Consensus 104 ~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~ 181 (269)
++|++|++++|.++.++...| +++|+.|++++|+++++++..|+.+++|+.|++++|.++++++..|..++. ++.+.
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~ 163 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS-LKELR 163 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEE
T ss_pred CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc-cceeE
Confidence 999999999999999998877 999999999999999999988999999999999999999999988888876 89999
Q ss_pred EeeccccCCCccccceecccccccccccCccccccccc-eeecCCCeeeeeeccce
Q psy14765 182 LDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEET-VLSKDNSYLSVFSGGVD 236 (269)
Q Consensus 182 l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~-~~~~~~~~~~~~~~~n~ 236 (269)
++.|.+...++... .....++.+++.+|.+...+.. +........+.+..+.+
T Consensus 164 L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 164 LYNNQLKRVPEGAF--DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCSSCCSCCCTTTT--TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ecCCcCcEeChhHh--ccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 99998888776432 2233488888888888654443 33334444444444433
No 11
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.93 E-value=5.7e-25 Score=176.33 Aligned_cols=137 Identities=20% Similarity=0.420 Sum_probs=125.7
Q ss_pred CCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhh
Q psy14765 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF 100 (269)
Q Consensus 21 ~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~ 100 (269)
.+||..|.|. ...++|++++++++|.+++++++.|++++|.|+.++ ..|. ++++|+.|++++|+|+.+++.+|
T Consensus 2 ~~CP~~C~C~----~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip-~~~~--~l~~L~~L~Ls~N~i~~i~~~~f 74 (193)
T 2wfh_A 2 SRCPTECTCL----DTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVP-KELS--NYKHLTLIDLSNNRISTLSNQSF 74 (193)
T ss_dssp --CCTTCEEE----TTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCC-GGGG--GCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCCCCEeC----CCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhH-HHhh--cccCCCEEECCCCcCCEeCHhHc
Confidence 5799999998 689999999999999999999999999999999998 5666 89999999999999999999999
Q ss_pred cCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCccee
Q psy14765 101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHT 164 (269)
Q Consensus 101 ~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 164 (269)
.++++|++|+|++|+|+.+++..| +++|+.|+|++|.|+.+++..|..+++|+.|+|++|.+..
T Consensus 75 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 999999999999999999988777 8999999999999999988889999999999999888764
No 12
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.2e-24 Score=185.28 Aligned_cols=204 Identities=17% Similarity=0.244 Sum_probs=167.5
Q ss_pred CCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCC
Q psy14765 25 LGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104 (269)
Q Consensus 25 ~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 104 (269)
+.|.|..-...++++|++++++.+|..++++++.|++++|.++.+++..|. ++++|+.|++++|.|+.+++. ..++
T Consensus 2 p~C~~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~--~~l~ 77 (290)
T 1p9a_G 2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQVD--GTLP 77 (290)
T ss_dssp CSSEEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEECC--SCCT
T ss_pred CcccccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhh--cCCCCCEEECCCCccCcccCC--CCCC
Confidence 357777656678999999999999999999999999999999999998888 899999999999999998763 6888
Q ss_pred CCCEEEcCCCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEe
Q psy14765 105 NMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLD 183 (269)
Q Consensus 105 ~L~~L~L~~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~ 183 (269)
+|+.|++++|+++.+|.... +++|+.|++++|+++++++..|.++++|+.|+|++|+++++++..|..++. ++.+.++
T Consensus 78 ~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~ 156 (290)
T 1p9a_G 78 VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-LEKLSLA 156 (290)
T ss_dssp TCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-CCEEECT
T ss_pred cCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC-CCEEECC
Confidence 99999999999998887666 889999999999999998888999999999999999999998888887776 7889999
Q ss_pred eccccCCCccccceecccccccccccCccccccccceeecCCCeeeeeeccc
Q psy14765 184 CRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSGGV 235 (269)
Q Consensus 184 ~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~n 235 (269)
.|.+...+..+.. ....++.+++.+|++...+..+........+.+.++.
T Consensus 157 ~N~l~~l~~~~~~--~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 157 NNNLTELPAGLLN--GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TSCCSCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CCcCCccCHHHhc--CcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 9888887765432 2233777888888887666655554444444444433
No 13
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=3.5e-25 Score=206.26 Aligned_cols=167 Identities=19% Similarity=0.374 Sum_probs=150.0
Q ss_pred CCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhc
Q psy14765 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101 (269)
Q Consensus 22 ~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~ 101 (269)
.|+..|.|. ....+++|++.++++||.++++++++|+|++|+|+.+++..|. ++++|++|+|++|+|+.+++++|.
T Consensus 22 ~~~~~c~~~--~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~--~l~~L~~L~Ls~N~i~~i~~~~f~ 97 (635)
T 4g8a_A 22 ESWEPCVEV--VPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQ 97 (635)
T ss_dssp ---CCSEEE--ETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTT
T ss_pred CCCCCcccc--CCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHh--CCCCCCEEECCCCcCCCcChhHhc
Confidence 445667776 4467999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred CCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeC-cccccccccCCC
Q psy14765 102 GVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY-SEAFYVMVLPGS 178 (269)
Q Consensus 102 ~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~~l~ 178 (269)
++++|++|+|++|+|+.+|..+| +++|++|++++|+++++++..|+++++|++|++++|.++.++ +..+..+.. ++
T Consensus 98 ~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~-L~ 176 (635)
T 4g8a_A 98 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN-LE 176 (635)
T ss_dssp TCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT-CC
T ss_pred CCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchh-hh
Confidence 99999999999999999999888 999999999999999999989999999999999999999875 456666665 79
Q ss_pred eeEEeeccccCCCcc
Q psy14765 179 NLTLDCRVQSATPCR 193 (269)
Q Consensus 179 ~l~l~~n~~~~~~~~ 193 (269)
.+.++.|.+...++.
T Consensus 177 ~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 177 HLDLSSNKIQSIYCT 191 (635)
T ss_dssp EEECCSSCCCEECGG
T ss_pred hhcccCccccccccc
Confidence 999999988776544
No 14
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=2.5e-25 Score=194.26 Aligned_cols=206 Identities=19% Similarity=0.275 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccE
Q psy14765 5 FILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQK 84 (269)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~ 84 (269)
|..+++.+.+.....+..||..|.|.+ ...++|++++++++|..++++++.|++++|.++.+++..|. ++++|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~C~~---~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~ 80 (353)
T 2z80_A 6 WMVWVLGVIISLSKEESSNQASLSCDR---NGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQ--RCVNLQA 80 (353)
T ss_dssp ---------------------CCEECT---TSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTT--TCTTCCE
T ss_pred HHHhhhhheeeccCccCCCccCCCCCC---CeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhc--cCCCCCE
Confidence 333444444444455668999999974 45699999999999999999999999999999999998888 8999999
Q ss_pred EEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCc-cccCCCCCCCEEEccCC-
Q psy14765 85 LYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISS-YSFQSTPGIRYIDMSNC- 160 (269)
Q Consensus 85 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N- 160 (269)
|++++|+|+++.+.+|.++++|++|++++|.++.++...+ +++|++|++++|+++.++. ..++.+++|+.|++++|
T Consensus 81 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 81 LVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred EECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc
Confidence 9999999999999999999999999999999999998765 9999999999999999977 67999999999999999
Q ss_pred cceeeCcccccccccCCCeeEEeeccccCCCccccceecccccccccccCcccccccc
Q psy14765 161 QIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEE 218 (269)
Q Consensus 161 ~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~ 218 (269)
.++.+++..|..++. ++.+.++.|.+....+.. +.....++.+++.+|.+...+.
T Consensus 161 ~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~ 215 (353)
T 2z80_A 161 TFTKIQRKDFAGLTF-LEELEIDASDLQSYEPKS--LKSIQNVSHLILHMKQHILLLE 215 (353)
T ss_dssp SCCEECTTTTTTCCE-EEEEEEEETTCCEECTTT--TTTCSEEEEEEEECSCSTTHHH
T ss_pred cccccCHHHccCCCC-CCEEECCCCCcCccCHHH--HhccccCCeecCCCCccccchh
Confidence 699998888888876 789999999877654332 2223347777777777754443
No 15
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=3.2e-25 Score=183.34 Aligned_cols=205 Identities=16% Similarity=0.264 Sum_probs=170.0
Q ss_pred CCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEccccc-ccccchhh
Q psy14765 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRA 99 (269)
Q Consensus 21 ~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~-i~~~~~~~ 99 (269)
+.||..|.|... ....|+|.+ ++++|. ++++++.|++++|+++.+++..|. ++++|++|++++|+ ++.+++.+
T Consensus 2 ~~cp~~C~C~~~-~~~~v~c~~--l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~ 75 (239)
T 2xwt_C 2 GCSSPPCECHQE-EDFRVTCKD--IQRIPS-LPPSTQTLKLIETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHS 75 (239)
T ss_dssp -CCSSSCSEEEC-STTEEEECS--CSSCCC-CCTTCCEEEEESCCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTT
T ss_pred CCCCCCCeeCCC-CcceeEccC--ccccCC-CCCcccEEEEeCCcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhH
Confidence 469999999841 356788988 999999 889999999999999999999998 89999999999997 99999999
Q ss_pred hcCCCCCCEEEcCC-CCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCC---EEEccCC-cceeeCcccccc
Q psy14765 100 FRGVTNMDELDLSD-NLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIR---YIDMSNC-QIHTIYSEAFYV 172 (269)
Q Consensus 100 ~~~l~~L~~L~L~~-N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~ 172 (269)
|.++++|++|++++ |.++.++...| +++|+.|++++|++++++. |..+++|+ .|++++| .++++++..|..
T Consensus 76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~ 153 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153 (239)
T ss_dssp EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccc
Confidence 99999999999999 99999998887 9999999999999999864 88888888 9999999 999999999988
Q ss_pred cccCCC-eeEEeeccccCCCccccceecccccccccccCcc-ccccccc-eeec-CCCeeeeeecccee
Q psy14765 173 MVLPGS-NLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNK-INIKEET-VLSK-DNSYLSVFSGGVDL 237 (269)
Q Consensus 173 l~~~l~-~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~-~~~~~~~-~~~~-~~~~~~~~~~~n~~ 237 (269)
+.. ++ .+.++.|.+...+...... ..++.+++.+|+ +...+.. +... .....+.+..+.+.
T Consensus 154 l~~-L~~~L~l~~n~l~~i~~~~~~~---~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 154 LCN-ETLTLKLYNNGFTSVQGYAFNG---TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TBS-SEEEEECCSCCCCEECTTTTTT---CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred hhc-ceeEEEcCCCCCcccCHhhcCC---CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 876 67 8999999888776544322 348888888884 7544333 3333 44555555555443
No 16
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.92 E-value=1.5e-24 Score=178.35 Aligned_cols=169 Identities=25% Similarity=0.437 Sum_probs=153.4
Q ss_pred CCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhh
Q psy14765 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF 100 (269)
Q Consensus 21 ~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~ 100 (269)
......|.|. ...|+|++++++.+|.+++++++.|++++|.|+.+++..|. ++++|+.|++++|+|+.+++..|
T Consensus 11 ~~~~~~~~Cs----~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~N~l~~i~~~~~ 84 (229)
T 3e6j_A 11 AACPSQCSCS----GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFD--SLINLKELYLGSNQLGALPVGVF 84 (229)
T ss_dssp CCCCTTCEEE----TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCCCCEEe----CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhh--CccCCcEEECCCCCCCCcChhhc
Confidence 3567889998 68899999999999999999999999999999999999998 89999999999999999999999
Q ss_pred cCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCC
Q psy14765 101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGS 178 (269)
Q Consensus 101 ~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~ 178 (269)
.++++|+.|+|++|+|+.++...| +++|+.|++++|+++.++ ..+..+++|+.|+|++|+|+.+++..|..++. ++
T Consensus 85 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~ 162 (229)
T 3e6j_A 85 DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSS-LT 162 (229)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC-TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTT-CC
T ss_pred ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccC-cccccCCCCCEEECCCCcCCccCHHHHhCCCC-CC
Confidence 999999999999999999998887 999999999999999885 45789999999999999999999988888876 79
Q ss_pred eeEEeeccccCCCccccce
Q psy14765 179 NLTLDCRVQSATPCRIMWS 197 (269)
Q Consensus 179 ~l~l~~n~~~~~~~~~~~~ 197 (269)
.+.+.+|++.+....+.|+
T Consensus 163 ~L~l~~N~~~c~c~~~~~l 181 (229)
T 3e6j_A 163 HAYLFGNPWDCECRDIMYL 181 (229)
T ss_dssp EEECTTSCBCTTBGGGHHH
T ss_pred EEEeeCCCccCCcchhHHH
Confidence 9999999976544345554
No 17
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.92 E-value=1.4e-24 Score=173.90 Aligned_cols=138 Identities=26% Similarity=0.527 Sum_probs=129.7
Q ss_pred CCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccc-cccccCCCcccEEEcccccccccchhhh
Q psy14765 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKE-IFLQMGITNIQKLYLRKCKLEFVDDRAF 100 (269)
Q Consensus 22 ~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~-~f~~~~l~~L~~L~L~~N~i~~~~~~~~ 100 (269)
+||..|.|. .++++|++++++++|..++.+++.|++++|.|+.+++. .|. .+++|++|++++|+|+++.+.+|
T Consensus 1 ~CP~~C~C~----~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~ 74 (192)
T 1w8a_A 1 DCPAMCHCE----GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFG--RLPHLVKLELKRNQLTGIEPNAF 74 (192)
T ss_dssp CCCTTSEEE----TTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGG--GCTTCCEEECCSSCCCCBCTTTT
T ss_pred CcCCCCEEC----CCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccc--cCCCCCEEECCCCCCCCcCHhHc
Confidence 599999998 58999999999999999999999999999999998875 577 89999999999999999999999
Q ss_pred cCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceee
Q psy14765 101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165 (269)
Q Consensus 101 ~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 165 (269)
.++++|++|+|++|+|+.++...| +++|+.|+|++|+++++.+..|..+++|+.|+|++|.++..
T Consensus 75 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 999999999999999999988877 99999999999999999999999999999999999998754
No 18
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=1.7e-24 Score=185.25 Aligned_cols=159 Identities=26% Similarity=0.429 Sum_probs=127.5
Q ss_pred CCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccc--hhhh
Q psy14765 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD--DRAF 100 (269)
Q Consensus 23 cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~--~~~~ 100 (269)
||..|.|. .+.|+|++++++++|..++++++.|++++|.++.+++..|. ++++|++|++++|+++.+. +..+
T Consensus 1 CP~~C~C~----~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~ 74 (306)
T 2z66_A 1 CPSRCSCS----GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFD--KLTQLTKLSLSSNGLSFKGCCSQSD 74 (306)
T ss_dssp CCTTCEEE----TTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCEEEEEEHHH
T ss_pred CcCCCeeC----CCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhh--ccccCCEEECCCCccCcccCccccc
Confidence 99999998 57999999999999999999999999999999999999888 8999999999999998663 4556
Q ss_pred cCCCCCCEEEcCCCCCCCcCCccC-ccccceeecCCCcccccCc-cccCCCCCCCEEEccCCcceeeCcccccccccCCC
Q psy14765 101 RGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQISS-YSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGS 178 (269)
Q Consensus 101 ~~l~~L~~L~L~~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~ 178 (269)
..+++|++|++++|.++.++.... +++|+.|++++|.++++++ ..+..+++|+.|++++|.++.+.+..+..++. ++
T Consensus 75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~ 153 (306)
T 2z66_A 75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LE 153 (306)
T ss_dssp HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTT-CC
T ss_pred ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcC-CC
Confidence 677888888888888877776554 7777777777777777755 45667777777777777777766666665554 56
Q ss_pred eeEEeecccc
Q psy14765 179 NLTLDCRVQS 188 (269)
Q Consensus 179 ~l~l~~n~~~ 188 (269)
.+.++.|.+.
T Consensus 154 ~L~l~~n~l~ 163 (306)
T 2z66_A 154 VLKMAGNSFQ 163 (306)
T ss_dssp EEECTTCEEG
T ss_pred EEECCCCccc
Confidence 6666666554
No 19
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.91 E-value=8.5e-24 Score=166.87 Aligned_cols=139 Identities=24% Similarity=0.468 Sum_probs=130.4
Q ss_pred CCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcC
Q psy14765 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102 (269)
Q Consensus 23 cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 102 (269)
||..|.|. .+.++|++++++.+|..++++++.|++++|+++.+++..|. ++++|++|++++|+|+.+++..|..
T Consensus 1 Cp~~C~C~----~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (177)
T 2o6r_A 1 CPSRCSCS----GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFD--KLTQLTKLSLSQNQIQSLPDGVFDK 74 (177)
T ss_dssp CCTTCEEE----TTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CcCCCEeC----CCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhc--CcccccEEECCCCcceEeChhHccC
Confidence 99999998 68999999999999999999999999999999999999888 8999999999999999999988999
Q ss_pred CCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCc
Q psy14765 103 VTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYS 167 (269)
Q Consensus 103 l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 167 (269)
+++|+.|++++|.++.++...+ +++|+.|++++|.++++++..|..+++|+.|++++|.+.+..+
T Consensus 75 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999999999999999988876 8999999999999999988888999999999999999886543
No 20
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=1.9e-23 Score=180.90 Aligned_cols=163 Identities=26% Similarity=0.481 Sum_probs=143.6
Q ss_pred CCCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhh
Q psy14765 20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA 99 (269)
Q Consensus 20 ~~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~ 99 (269)
...||..|.|. .+.++|++++++.+|..++++++.|++++|.++.+++..|. ++++|++|++++|+|+.+.+.+
T Consensus 24 ~~~cp~~c~c~----l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~ 97 (332)
T 2ft3_A 24 SAMCPFGCHCH----LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFK--GLQHLYALVLVNNKISKIHEKA 97 (332)
T ss_dssp -CCCCSSCEEE----TTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECGGG
T ss_pred cCCCCCCCccc----CCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhh--CCCCCcEEECCCCccCccCHhH
Confidence 35899999998 68999999999999999999999999999999999998888 8999999999999999999999
Q ss_pred hcCCCCCCEEEcCCCCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCccee--eCcccccccccCC
Q psy14765 100 FRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHT--IYSEAFYVMVLPG 177 (269)
Q Consensus 100 ~~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~~l 177 (269)
|.++++|++|++++|.++.+|...+ ++|++|++++|+++.+++..|.++++|+.|++++|.++. +.+..+..+ .+
T Consensus 98 ~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L 174 (332)
T 2ft3_A 98 FSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KL 174 (332)
T ss_dssp STTCTTCCEEECCSSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CC
T ss_pred hhCcCCCCEEECCCCcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--cc
Confidence 9999999999999999999998775 899999999999999988889999999999999999974 556666655 24
Q ss_pred CeeEEeeccccCCC
Q psy14765 178 SNLTLDCRVQSATP 191 (269)
Q Consensus 178 ~~l~l~~n~~~~~~ 191 (269)
+.+.++.|.+...+
T Consensus 175 ~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 175 NYLRISEAKLTGIP 188 (332)
T ss_dssp SCCBCCSSBCSSCC
T ss_pred CEEECcCCCCCccC
Confidence 56666655555444
No 21
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.91 E-value=2.9e-24 Score=187.51 Aligned_cols=167 Identities=18% Similarity=0.318 Sum_probs=128.2
Q ss_pred CCCCC-CeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccc-cccchhh
Q psy14765 22 SCPLG-CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFVDDRA 99 (269)
Q Consensus 22 ~cp~~-C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i-~~~~~~~ 99 (269)
.||.. |+|. .++|+|+++++++||..++++++.|++++|+|+.|++++|. ++++|++|+|++|++ +.+++++
T Consensus 1 gCp~~~C~C~----~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~Ls~N~i~~~i~~~~ 74 (350)
T 4ay9_X 1 GCHHRICHCS----NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADV 74 (350)
T ss_dssp -CCCSSSEEE----TTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSST--TCTTCCEEEEECCTTCCEECTTS
T ss_pred CCCCCccEee----CCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHc--CCCCCCEEECcCCCCCCccChhH
Confidence 49865 9998 68999999999999999999999999999999999999998 999999999999998 4577788
Q ss_pred hcCCCCCCE-EEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccC-CcceeeCccccccccc
Q psy14765 100 FRGVTNMDE-LDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSN-CQIHTIYSEAFYVMVL 175 (269)
Q Consensus 100 ~~~l~~L~~-L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~ 175 (269)
|.+++++.+ +.++.|+++.+++..| +++|++|++++|+++.+++..+.....+..+++.+ |.+..++...|..+..
T Consensus 75 f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~ 154 (350)
T 4ay9_X 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 154 (350)
T ss_dssp BCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS
T ss_pred hhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcch
Confidence 999988765 6677899999988887 89999999999998877665554444455555533 4555555555544443
Q ss_pred CCCeeEEeeccccCCCccc
Q psy14765 176 PGSNLTLDCRVQSATPCRI 194 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~ 194 (269)
.+..+.+++|.+..++..+
T Consensus 155 ~l~~L~L~~N~i~~i~~~~ 173 (350)
T 4ay9_X 155 ESVILWLNKNGIQEIHNSA 173 (350)
T ss_dssp SCEEEECCSSCCCEECTTS
T ss_pred hhhhhccccccccCCChhh
Confidence 3444555555554444433
No 22
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=3.3e-23 Score=179.13 Aligned_cols=164 Identities=24% Similarity=0.421 Sum_probs=142.4
Q ss_pred CCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhh
Q psy14765 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF 100 (269)
Q Consensus 21 ~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~ 100 (269)
..||..|.|. .+.++|++++++.+|..+++.++.|++++|.++.+++..|. ++++|++|++++|+++.+.+..|
T Consensus 23 ~~cp~~c~c~----l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~ 96 (330)
T 1xku_A 23 PVCPFRCQCH----LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK--NLKNLHTLILINNKISKISPGAF 96 (330)
T ss_dssp CCCCTTCEEE----TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTTTT
T ss_pred CCCCCCCcCC----CeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhc--cCCCCCEEECCCCcCCeeCHHHh
Confidence 5799999998 68999999999999999999999999999999999998888 89999999999999999999999
Q ss_pred cCCCCCCEEEcCCCCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCccee--eCcccccccccCCC
Q psy14765 101 RGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHT--IYSEAFYVMVLPGS 178 (269)
Q Consensus 101 ~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~~l~ 178 (269)
..+++|++|++++|.++.+|...+ ++|+.|++++|.++++++..|.++++|+.|++++|.++. +.+..+..++. ++
T Consensus 97 ~~l~~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~-L~ 174 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK-LS 174 (330)
T ss_dssp TTCTTCCEEECCSSCCSBCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT-CC
T ss_pred cCCCCCCEEECCCCcCCccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC-cC
Confidence 999999999999999999987664 788999999999988888778888888888888888864 55566666654 56
Q ss_pred eeEEeeccccCCCc
Q psy14765 179 NLTLDCRVQSATPC 192 (269)
Q Consensus 179 ~l~l~~n~~~~~~~ 192 (269)
.+.++.|.+...+.
T Consensus 175 ~L~l~~n~l~~l~~ 188 (330)
T 1xku_A 175 YIRIADTNITTIPQ 188 (330)
T ss_dssp EEECCSSCCCSCCS
T ss_pred EEECCCCccccCCc
Confidence 67777666665543
No 23
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=7.8e-23 Score=172.41 Aligned_cols=163 Identities=20% Similarity=0.388 Sum_probs=142.2
Q ss_pred CCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCC
Q psy14765 25 LGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104 (269)
Q Consensus 25 ~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 104 (269)
+.|.|.. ....++|++..++++|..++++++.|++++|.++.+++..|. ++++|++|++++|+++.+++.+|.+++
T Consensus 1 ~~C~~~~--~~~~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~ 76 (276)
T 2z62_A 1 EPCVEVV--PNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLS 76 (276)
T ss_dssp CCSEEEE--TTTEEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTT--TCTTCSEEECTTCCCCEECTTTTTTCT
T ss_pred CCceecc--CCceEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhc--cccCCcEEECCCCcCCccCHHHccCCc
Confidence 3588863 346899999999999999999999999999999999998887 899999999999999999998999999
Q ss_pred CCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeC-cccccccccCCCeeE
Q psy14765 105 NMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY-SEAFYVMVLPGSNLT 181 (269)
Q Consensus 105 ~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~~l~~l~ 181 (269)
+|++|++++|.++.++...+ +++|+.|++++|.+.++.+..++.+++|+.|++++|.++++. +..+..++. ++.+.
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~-L~~L~ 155 (276)
T 2z62_A 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN-LEHLD 155 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT-CCEEE
T ss_pred CCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCC-CCEEE
Confidence 99999999999998887666 899999999999999988877888999999999999998865 567777765 78888
Q ss_pred EeeccccCCCc
Q psy14765 182 LDCRVQSATPC 192 (269)
Q Consensus 182 l~~n~~~~~~~ 192 (269)
++.|.+...++
T Consensus 156 Ls~N~l~~~~~ 166 (276)
T 2z62_A 156 LSSNKIQSIYC 166 (276)
T ss_dssp CCSSCCCEECG
T ss_pred CCCCCCCcCCH
Confidence 88887776554
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=9.9e-23 Score=189.60 Aligned_cols=191 Identities=19% Similarity=0.219 Sum_probs=159.8
Q ss_pred CCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhh
Q psy14765 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF 100 (269)
Q Consensus 21 ~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~ 100 (269)
.+||..|.|.. ...+++|++.+++++|..+++.++.|++++|.|+.+++..|. ++++|++|++++|+++.+.+.+|
T Consensus 2 ~~~~~~C~~~~--~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~ 77 (606)
T 3t6q_A 2 TSSDQKCIEKE--VNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFS--RLINLTFLDLTRCQIYWIHEDTF 77 (606)
T ss_dssp ----CCCEEEE--TTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTST--TCTTCSEEECTTCCCCEECTTTT
T ss_pred ccccCceeccc--CCceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhc--cCccceEEECCCCccceeChhhc
Confidence 46999999973 467999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred cCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCC
Q psy14765 101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGS 178 (269)
Q Consensus 101 ~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~ 178 (269)
.++++|++|++++|.++.+++..+ +++|++|++++|.++++.+..++++++|++|++++|.+++++...+..++. ++
T Consensus 78 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~ 156 (606)
T 3t6q_A 78 QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK-LK 156 (606)
T ss_dssp TTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTT-CC
T ss_pred cCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcc-cC
Confidence 999999999999999998866666 999999999999999998888999999999999999999987555555554 79
Q ss_pred eeEEeeccccCCCccccceecccccc--cccccCcccccccc
Q psy14765 179 NLTLDCRVQSATPCRIMWSINRKIYD--HVNWNSNKINIKEE 218 (269)
Q Consensus 179 ~l~l~~n~~~~~~~~~~~~~~~~~l~--~l~~~~n~~~~~~~ 218 (269)
.+.++.|.+...++... .....++ .+++.+|.+...+.
T Consensus 157 ~L~L~~n~l~~~~~~~~--~~l~~L~~l~L~l~~n~l~~~~~ 196 (606)
T 3t6q_A 157 VLDFQNNAIHYLSKEDM--SSLQQATNLSLNLNGNDIAGIEP 196 (606)
T ss_dssp EEECCSSCCCEECHHHH--HTTTTCCSEEEECTTCCCCEECT
T ss_pred EEEcccCcccccChhhh--hhhcccceeEEecCCCccCccCh
Confidence 99999998776654322 1222244 56777777754433
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=2.3e-22 Score=180.83 Aligned_cols=166 Identities=19% Similarity=0.272 Sum_probs=142.1
Q ss_pred CCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEccccccc-ccchhh
Q psy14765 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE-FVDDRA 99 (269)
Q Consensus 21 ~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~-~~~~~~ 99 (269)
.+||..|.|. ...++|++++++.+|. ++++++.|++++|.++.+++..|. ++++|++|++++|.+. .+++.+
T Consensus 2 ~p~~~~c~~~----~~~~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~n~~~~~i~~~~ 74 (455)
T 3v47_A 2 DPGTSECSVI----GYNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFS--RLQDLQFLKVEQQTPGLVIRNNT 74 (455)
T ss_dssp -----CCEEE----TTEEECCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTS--SCTTCCEEECCCCSTTCEECTTT
T ss_pred CCccceeEEE----ccccCcCCCCcccCCC-CCCccCEEEecCCccCcCChhHhc--cCccccEEECcCCcccceECccc
Confidence 5699999998 6889999999999999 889999999999999999888888 8999999999999997 677888
Q ss_pred hcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccC--ccccCCCCCCCEEEccCCcceeeCccc-ccccc
Q psy14765 100 FRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQIS--SYSFQSTPGIRYIDMSNCQIHTIYSEA-FYVMV 174 (269)
Q Consensus 100 ~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~ 174 (269)
|.++++|++|++++|.++.+++..+ +++|++|++++|.+++.. ...|+.+++|++|++++|.++++.+.. +..++
T Consensus 75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 154 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154 (455)
T ss_dssp TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence 9999999999999999998866555 999999999999998743 344889999999999999999986655 77777
Q ss_pred cCCCeeEEeeccccCCCccc
Q psy14765 175 LPGSNLTLDCRVQSATPCRI 194 (269)
Q Consensus 175 ~~l~~l~l~~n~~~~~~~~~ 194 (269)
. ++.+.+++|.+....+..
T Consensus 155 ~-L~~L~L~~n~l~~~~~~~ 173 (455)
T 3v47_A 155 R-FHVLDLTFNKVKSICEED 173 (455)
T ss_dssp T-CCEEECTTCCBSCCCTTT
T ss_pred c-ccEEeCCCCcccccChhh
Confidence 6 899999999887765543
No 26
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=7.3e-22 Score=164.38 Aligned_cols=162 Identities=20% Similarity=0.312 Sum_probs=149.9
Q ss_pred CCcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765 34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (269)
Q Consensus 34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 110 (269)
..+.++.+++++..+++... ++|+.|++++|.++.+++..|. ++++|++|++++|+|+.+++..|..+++|++|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD--DLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc--cCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 35789999999999887544 7999999999999999999998 899999999999999999999999999999999
Q ss_pred cCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeecccc
Q psy14765 111 LSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQS 188 (269)
Q Consensus 111 L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~ 188 (269)
+++|.++.++...| +++|+.|++++|+++++++..|+.+++|+.|+|++|+++++++..|..++. ++.+.+++|.+.
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~N~~~ 192 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK-LQTITLFGNQFD 192 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSCCBC
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCC-CCEEEeeCCcee
Confidence 99999999998887 999999999999999999988999999999999999999999988988876 899999999998
Q ss_pred CCCcccccee
Q psy14765 189 ATPCRIMWSI 198 (269)
Q Consensus 189 ~~~~~~~~~~ 198 (269)
+..+++.|+.
T Consensus 193 c~~~~~~~l~ 202 (251)
T 3m19_A 193 CSRCEILYLS 202 (251)
T ss_dssp TTSTTHHHHH
T ss_pred CCccccHHHH
Confidence 8778887773
No 27
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=2.1e-22 Score=175.67 Aligned_cols=186 Identities=16% Similarity=0.239 Sum_probs=145.6
Q ss_pred chhHHHHHHHHHHHh---cccCCCCCCCCeEeee------------CCCcEEEcCCCCCcccCCCCC---CCceEEEeec
Q psy14765 2 CHKFILSVFLLTLLA---SVTQASCPLGCSCKWK------------AGKRTVECIDRNFYTIPEGID---LDTQVLDLSS 63 (269)
Q Consensus 2 ~~~~~~~~~~~~~~~---~~~~~~cp~~C~C~~~------------~~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~ 63 (269)
+..|++.++++.... ..+...||..|.|+.. +.-++++++++.++.+|.... ++++.|++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 85 (353)
T 2z80_A 6 WMVWVLGVIISLSKEESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS 85 (353)
T ss_dssp ---------------------CCEECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred HHHhhhhheeeccCccCCCccCCCCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCC
Confidence 344555555543332 2233489999998853 234789999999999988443 7999999999
Q ss_pred CCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCC-ccC--ccccceeecCCC-ccc
Q psy14765 64 NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS-LIY--IPYLKSINLAHN-PIN 139 (269)
Q Consensus 64 n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~--l~~L~~L~L~~N-~i~ 139 (269)
|.++.+++..|. ++++|++|++++|+|+.+++..|.++++|++|++++|.++.++. ..+ +++|+.|++++| .+.
T Consensus 86 n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~ 163 (353)
T 2z80_A 86 NGINTIEEDSFS--SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 163 (353)
T ss_dssp SCCCEECTTTTT--TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred CccCccCHhhcC--CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc
Confidence 999999999888 89999999999999999999889999999999999999999988 555 999999999999 689
Q ss_pred ccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCC
Q psy14765 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSAT 190 (269)
Q Consensus 140 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~ 190 (269)
.+++..|+++++|+.|++++|.++++.+..+..++. ++.+.++.|.+...
T Consensus 164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~ 213 (353)
T 2z80_A 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN-VSHLILHMKQHILL 213 (353)
T ss_dssp EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE-EEEEEEECSCSTTH
T ss_pred ccCHHHccCCCCCCEEECCCCCcCccCHHHHhcccc-CCeecCCCCccccc
Confidence 998888999999999999999999998888877664 56666666665443
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=5.8e-22 Score=184.41 Aligned_cols=192 Identities=17% Similarity=0.323 Sum_probs=159.5
Q ss_pred CeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCC
Q psy14765 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106 (269)
Q Consensus 27 C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 106 (269)
|.|. ....+++|++++++.+|..++++++.|++++|.++.+++..|. ++++|++|++++|+|+++++.+|.++++|
T Consensus 7 c~~~--~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L 82 (606)
T 3vq2_A 7 CIEV--VPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFS--NFSELQWLDLSRCEIETIEDKAWHGLHHL 82 (606)
T ss_dssp CEEE--ETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred ceec--CCCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhcc--CCccCcEEeCCCCcccccCHHHhhchhhc
Confidence 6664 2357999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred CEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeC-cccccccccCCCeeEEe
Q psy14765 107 DELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY-SEAFYVMVLPGSNLTLD 183 (269)
Q Consensus 107 ~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~~l~~l~l~ 183 (269)
++|++++|.++.+++..+ +++|++|++++|.++++++..++++++|++|++++|.++++. +..|..++. ++.+.++
T Consensus 83 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~-L~~L~Ls 161 (606)
T 3vq2_A 83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN-LVHVDLS 161 (606)
T ss_dssp CEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTT-CCEEECC
T ss_pred CEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCC-CCEEEcc
Confidence 999999999998866666 999999999999999998888999999999999999999754 567787776 8999999
Q ss_pred eccccCCCccc-cceeccc-ccccccccCccccccccceeec
Q psy14765 184 CRVQSATPCRI-MWSINRK-IYDHVNWNSNKINIKEETVLSK 223 (269)
Q Consensus 184 ~n~~~~~~~~~-~~~~~~~-~l~~l~~~~n~~~~~~~~~~~~ 223 (269)
.|.+...++.. ..+.... .+..+++.+|.+...+......
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~ 203 (606)
T 3vq2_A 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203 (606)
T ss_dssp SSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred CCcceecChhhhhhhhccccccceeeccCCCcceeCcccccC
Confidence 98877665432 2222111 0235677777776554444333
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=5e-22 Score=187.30 Aligned_cols=182 Identities=16% Similarity=0.245 Sum_probs=160.8
Q ss_pred CCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCC
Q psy14765 26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN 105 (269)
Q Consensus 26 ~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 105 (269)
.|.|. ...++|++++++++|..++++++.|++++|.++.+++..|. ++++|++|++++|.++++.+.+|.++++
T Consensus 1 ~C~~~----~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 74 (680)
T 1ziw_A 1 KCTVS----HEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFT--RYSQLTSLDVGFNTISKLEPELCQKLPM 74 (680)
T ss_dssp ---CB----SSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGG--GGTTCSEEECCSSCCCCCCTTHHHHCTT
T ss_pred CceeE----CCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHh--CCCcCcEEECCCCccCccCHHHHhcccC
Confidence 37787 57899999999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred CCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEe
Q psy14765 106 MDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLD 183 (269)
Q Consensus 106 L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~ 183 (269)
|++|++++|.++.+|...| +++|++|++++|.++++++..|+++++|++|++++|.++++++..+..+.. ++.+.++
T Consensus 75 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~ 153 (680)
T 1ziw_A 75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-LQELLLS 153 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTT-CCEEECC
T ss_pred cCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhccccc-CCEEEcc
Confidence 9999999999999998766 999999999999999999889999999999999999999998888888776 8999999
Q ss_pred eccccCCCccccceecccccccccccCcccc
Q psy14765 184 CRVQSATPCRIMWSINRKIYDHVNWNSNKIN 214 (269)
Q Consensus 184 ~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~ 214 (269)
.|.+...++..........++.+++.+|.+.
T Consensus 154 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 154 NNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp SSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCcccccCHHHhhccccccccEEECCCCccc
Confidence 9988776654433333445788888888764
No 30
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=3.1e-21 Score=162.26 Aligned_cols=175 Identities=18% Similarity=0.298 Sum_probs=152.4
Q ss_pred CcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765 35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 111 (269)
.+.++.+++.++.+|.... ++|+.|++++|.++.+++..|. ++++|++|++++|+++.+++..|..+++|++|++
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK--ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTS--SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhc--CCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 5789999999999887543 7899999999999999999988 8999999999999999999988999999999999
Q ss_pred CCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccC
Q psy14765 112 SDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSA 189 (269)
Q Consensus 112 ~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~ 189 (269)
++|.++.++...+ +++|+.|++++|.++++++..|+.+++|+.|++++|.++++++..|..++. ++.+.++.|.+..
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE-LKTLKLDNNQLKR 195 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSSCCSC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCC-cCEEECCCCcCCc
Confidence 9999999988777 999999999999999998888999999999999999999999888888776 7999999998887
Q ss_pred CCccccceecccccccccccCcccc
Q psy14765 190 TPCRIMWSINRKIYDHVNWNSNKIN 214 (269)
Q Consensus 190 ~~~~~~~~~~~~~l~~l~~~~n~~~ 214 (269)
.++.... ....++.+++.+|.+.
T Consensus 196 ~~~~~~~--~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 196 VPEGAFD--SLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCTTTTT--TCTTCCEEECCSSCBC
T ss_pred CCHHHhc--cccCCCEEEecCCCee
Confidence 7764322 2334777888888764
No 31
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.87 E-value=1.3e-21 Score=153.49 Aligned_cols=114 Identities=32% Similarity=0.580 Sum_probs=96.0
Q ss_pred CCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhc
Q psy14765 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101 (269)
Q Consensus 22 ~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~ 101 (269)
+||..|.|. .++|+|++++++++|..++++++.|++++|.|+.+++..|. ++++|++|+|++|+|+.+++..|.
T Consensus 2 ~CP~~C~C~----~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~f~ 75 (170)
T 3g39_A 2 ACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFD--RLTQLTRLDLDNNQLTVLPAGVFD 75 (170)
T ss_dssp CCC-CCEEE----TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTT
T ss_pred cCcCcCCcC----CCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhc--CcccCCEEECCCCCcCccChhhcc
Confidence 699999998 68999999999999999889999999999999988888887 788888888888888888888888
Q ss_pred CCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCccccc
Q psy14765 102 GVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQI 141 (269)
Q Consensus 102 ~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~ 141 (269)
++++|++|+|++|+|+.++...| +++|+.|+|++|++...
T Consensus 76 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 88888888888888888777655 67777777777766644
No 32
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=5.1e-21 Score=162.00 Aligned_cols=200 Identities=14% Similarity=0.148 Sum_probs=164.0
Q ss_pred CCcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEccccc-ccccchhhhcCCCCCCEE
Q psy14765 34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRAFRGVTNMDEL 109 (269)
Q Consensus 34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L 109 (269)
.-+.++++++.++.+|.... ++++.|++++|.++.+.+..|. ++++|++|++++|. ++.+.+..|..+++|++|
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT--GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcC--CccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 35789999999999886543 7899999999999999888888 89999999999997 999988899999999999
Q ss_pred EcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccc
Q psy14765 110 DLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQ 187 (269)
Q Consensus 110 ~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~ 187 (269)
++++|.++.+++..+ +++|+.|++++|+++++++..|+.+++|+.|++++|+++++++..|..++. ++.+.++.|.+
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS-LDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT-CCEEECCSSCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccc-cCEEECCCCcc
Confidence 999999998877666 899999999999999998888999999999999999999999888888776 79999999988
Q ss_pred cCCCccccceecccccccccccCccccccccc-eeecCCCeeeeeeccceee
Q psy14765 188 SATPCRIMWSINRKIYDHVNWNSNKINIKEET-VLSKDNSYLSVFSGGVDLA 238 (269)
Q Consensus 188 ~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~-~~~~~~~~~~~~~~~n~~~ 238 (269)
....+... .....++.+++.+|.+...+.. +........+.+..+.+.|
T Consensus 190 ~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 190 AHVHPHAF--RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CEECTTTT--TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cccCHhHc--cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 76644332 2334488888888888644432 4444555555666655554
No 33
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.87 E-value=1.7e-21 Score=153.56 Aligned_cols=116 Identities=34% Similarity=0.592 Sum_probs=96.1
Q ss_pred CCCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhh
Q psy14765 20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA 99 (269)
Q Consensus 20 ~~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~ 99 (269)
+.+||..|+|. .+.++|+++++.++|..++++++.|++++|+|+.+++..|. ++++|++|+|++|+|+.+++..
T Consensus 3 ~~~CP~~C~C~----~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~i~~~~ 76 (174)
T 2r9u_A 3 SAGCPSQCSCD----QTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFD--HLVNLQQLYFNSNKLTAIPTGV 76 (174)
T ss_dssp CCSSCTTSEEC----SSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCCCCCEEC----CcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhc--CCcCCCEEECCCCCCCccChhH
Confidence 46899999997 68999999999999999888999999999999988888887 7888888888888888888777
Q ss_pred hcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCccccc
Q psy14765 100 FRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQI 141 (269)
Q Consensus 100 ~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~ 141 (269)
|.++++|+.|+|++|+|+.++...+ +++|+.|+|++|++...
T Consensus 77 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 77 FDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred hCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 7788888888888888887776655 66677777766666544
No 34
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.86 E-value=7.5e-21 Score=165.39 Aligned_cols=224 Identities=17% Similarity=0.212 Sum_probs=155.3
Q ss_pred CCCCC-eEeeeCCCcEEEcCCC-CCcccCCCCC--CCceEEEeec-CCccccccccccccCCCcccEEEcccccccccch
Q psy14765 23 CPLGC-SCKWKAGKRTVECIDR-NFYTIPEGID--LDTQVLDLSS-NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97 (269)
Q Consensus 23 cp~~C-~C~~~~~~~~v~c~~~-~l~~ip~~~~--~~l~~L~l~~-n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~ 97 (269)
||..| .|. ...|+|+++ +|+.||. ++ .+|+.|+|++ |.|+.+++..|. ++++|+.|+|++|+|+++++
T Consensus 1 cp~~c~~C~----~~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~ 73 (347)
T 2ifg_A 1 CPDACCPHG----SSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLR--GLGELRNLTIVKSGLRFVAP 73 (347)
T ss_dssp CCSSSCCSS----SSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSC--SCCCCSEEECCSSCCCEECT
T ss_pred CCCcCcccc----CCEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhc--cccCCCEEECCCCccceeCH
Confidence 99999 997 578999998 9999999 77 5799999996 999999999998 99999999999999999999
Q ss_pred hhhcCCCCCCEEEcCCCCCCCcCCccC-ccccceeecCCCcccccCc-cccCCC------------------CCCCEEEc
Q psy14765 98 RAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQISS-YSFQST------------------PGIRYIDM 157 (269)
Q Consensus 98 ~~~~~l~~L~~L~L~~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~-~~~~~l------------------~~L~~L~L 157 (269)
.+|.++++|+.|+|++|+|+.+|...| ...|+.|+|.+|++..... ..|..+ ..++.+.+
T Consensus 74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~~l~~l~~ 153 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPN 153 (347)
T ss_dssp TGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCCC
T ss_pred HHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCChHHhcCCc
Confidence 999999999999999999999999888 4459999999999874321 001000 01222222
Q ss_pred cCCcceeeCcccccccccCCCeeEEeeccccCCCccccceeccccccccccc---CccccccccceeecCCCe-eeeeec
Q psy14765 158 SNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWN---SNKINIKEETVLSKDNSY-LSVFSG 233 (269)
Q Consensus 158 ~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~---~n~~~~~~~~~~~~~~~~-~~~~~~ 233 (269)
..+....+....-......++.+.+.|...+.+.+.+.|..+......-.-. .....+....+. ..... .+.|.+
T Consensus 154 ~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~D~G~~Y~C~a 232 (347)
T 2ifg_A 154 ASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVT-SDLNRKNVTCWA 232 (347)
T ss_dssp TTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCC-STTTTCCEEECC
T ss_pred ccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecccceEEEeeCC-hHHCCCeEEEEE
Confidence 2221111111111112244688999999988899999999875432211100 000011111222 23334 677877
Q ss_pred cceeeeecCCCcceeeecCce
Q psy14765 234 GVDLAAASSPGGENIYDQKST 254 (269)
Q Consensus 234 ~n~~~~~~~~~~~~~~~~~~~ 254 (269)
.|..|.....+.+.+..+|.+
T Consensus 233 ~n~~g~~~~~~~l~V~~~P~i 253 (347)
T 2ifg_A 233 ENDVGRAEVSVQVNVSFPASV 253 (347)
T ss_dssp EETTEECCEEECCCCBEEEEE
T ss_pred EcCCCCEEEEEEEEEcCCCee
Confidence 777666666666666666664
No 35
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=6.6e-21 Score=160.58 Aligned_cols=198 Identities=16% Similarity=0.201 Sum_probs=164.1
Q ss_pred CcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765 35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 111 (269)
-++++.+++.++.++.... ++++.|++++|.++.+++..|. ++++|++|++++|+++.+++..|.++++|++|++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHcc--CCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 6899999999999887443 7999999999999999999898 8999999999999999999999999999999999
Q ss_pred CCCCCCCcCCccC--ccccceeecCCCcccccC-ccccCCCCCCCEEEccCCcceeeCcccccccccCCC----eeEEee
Q psy14765 112 SDNLLSTVPSLIY--IPYLKSINLAHNPINQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGS----NLTLDC 184 (269)
Q Consensus 112 ~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~----~l~l~~ 184 (269)
++|.++.++...+ +++|+.|++++|.++++. +..++.+++|+.|++++|+++++++..+..+.. +. .+.++.
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~l~l~L~ls~ 186 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ-MPLLNLSLDLSL 186 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT-CTTCCEEEECCS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh-ccccceeeecCC
Confidence 9999999887656 999999999999999865 777999999999999999999999888877664 34 688888
Q ss_pred ccccCCCccccceecccccccccccCccccccccce-eecCCCeeeeeeccceee
Q psy14765 185 RVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETV-LSKDNSYLSVFSGGVDLA 238 (269)
Q Consensus 185 n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~-~~~~~~~~~~~~~~n~~~ 238 (269)
|.+...++...... .++.+++++|.+...+... ........+.+..+.+.|
T Consensus 187 n~l~~~~~~~~~~~---~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 187 NPMNFIQPGAFKEI---RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp SCCCEECTTSSCSC---CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CcccccCccccCCC---cccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 88887766554333 3888888888886555443 334455555555555544
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=5.9e-21 Score=176.12 Aligned_cols=185 Identities=18% Similarity=0.362 Sum_probs=157.5
Q ss_pred CCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCC
Q psy14765 26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN 105 (269)
Q Consensus 26 ~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 105 (269)
.|.|. .....++|++.+++++|..++++++.|++++|.++.+++..|. ++++|++|++++|+++++++.+|.++++
T Consensus 2 ~c~~~--~~~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~~~~~l~~ 77 (570)
T 2z63_A 2 PCVEV--VPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSH 77 (570)
T ss_dssp CSEEE--ETTTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTT--TCSSCCEEECTTCCCCEECTTTTTTCTT
T ss_pred Ccccc--CCCcEEEeCCCCccccCCCccccccEEEccCCccCccChhHhh--CCCCceEEECCCCcCCccCcccccCchh
Confidence 58777 3357899999999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred CCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeC-cccccccccCCCeeEE
Q psy14765 106 MDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY-SEAFYVMVLPGSNLTL 182 (269)
Q Consensus 106 L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~~l~~l~l 182 (269)
|++|++++|.++.+++..| +++|++|++++|.++++++..++++++|++|++++|.++++. +..|..++. ++.+++
T Consensus 78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~-L~~L~l 156 (570)
T 2z63_A 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN-LEHLDL 156 (570)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT-CCEEEC
T ss_pred CCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCC-CCEEeC
Confidence 9999999999999987777 999999999999999998878999999999999999999864 567777776 899999
Q ss_pred eeccccCCCccccceeccccc----ccccccCccccccc
Q psy14765 183 DCRVQSATPCRIMWSINRKIY----DHVNWNSNKINIKE 217 (269)
Q Consensus 183 ~~n~~~~~~~~~~~~~~~~~l----~~l~~~~n~~~~~~ 217 (269)
+.|.+...++...... ..+ ..+++.+|.+...+
T Consensus 157 ~~n~l~~~~~~~~~~l--~~L~~~~~~L~l~~n~l~~~~ 193 (570)
T 2z63_A 157 SSNKIQSIYCTDLRVL--HQMPLLNLSLDLSLNPMNFIQ 193 (570)
T ss_dssp TTSCCCEECGGGGHHH--HTCTTCCCEEECTTCCCCEEC
T ss_pred cCCccceecHHHccch--hccchhhhhcccCCCCceecC
Confidence 9988776654322221 113 45667777665443
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=8.7e-21 Score=175.26 Aligned_cols=159 Identities=18% Similarity=0.247 Sum_probs=133.4
Q ss_pred CCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhh
Q psy14765 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF 100 (269)
Q Consensus 21 ~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~ 100 (269)
..|+..|.|.. .+.++|++++++.+|..++++++.|++++|.++.+++..|. ++++|++|++++|+|+++.+++|
T Consensus 22 ~~~~~~~~~~~---~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~ 96 (562)
T 3a79_B 22 VGSMTPFSNEL---ESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDIS--FLSELRVLRLSHNRIRSLDFHVF 96 (562)
T ss_dssp --------------CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTT--TCTTCCEEECCSCCCCEECTTTT
T ss_pred hccccccccCC---CcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhc--cCCCccEEECCCCCCCcCCHHHh
Confidence 34666677763 47999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred cCCCCCCEEEcCCCCCCCcCCccCccccceeecCCCcccccC-ccccCCCCCCCEEEccCCcceeeCcccccccccCCCe
Q psy14765 101 RGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSN 179 (269)
Q Consensus 101 ~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~ 179 (269)
.++++|++|++++|.++.+|.. .+++|++|++++|++++++ +..|+++++|++|++++|+++......+..+ .++.
T Consensus 97 ~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L--~L~~ 173 (562)
T 3a79_B 97 LFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL--HLSC 173 (562)
T ss_dssp TTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS--CEEE
T ss_pred CCCCCCCEEECCCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc--eeeE
Confidence 9999999999999999999887 6999999999999999986 4789999999999999999987543333333 2388
Q ss_pred eEEeeccc
Q psy14765 180 LTLDCRVQ 187 (269)
Q Consensus 180 l~l~~n~~ 187 (269)
+.++.|.+
T Consensus 174 L~L~~n~l 181 (562)
T 3a79_B 174 ILLDLVSY 181 (562)
T ss_dssp EEEEESSC
T ss_pred EEeecccc
Confidence 89998877
No 38
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=4.4e-21 Score=176.35 Aligned_cols=157 Identities=25% Similarity=0.409 Sum_probs=139.3
Q ss_pred CCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhc
Q psy14765 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101 (269)
Q Consensus 22 ~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~ 101 (269)
+||..|.|+ |++++++++|..+++++++|++++|.++.+++..|. ++++|++|++++|+|+++++.+|.
T Consensus 3 ~C~~~~~c~---------~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~ 71 (549)
T 2z81_A 3 SCDASGVCD---------GRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLR--ACANLQVLILKSSRINTIEGDAFY 71 (549)
T ss_dssp EECTTSEEE---------CTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTS--SCTTCCEEECTTSCCCEECTTTTT
T ss_pred cCCCCceEE---------CCCCccccccccCCCCccEEECcCCccCccChhhhh--cCCcccEEECCCCCcCccChhhcc
Confidence 588888774 688999999999999999999999999999888888 899999999999999999999999
Q ss_pred CCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccC-ccccCCCCCCCEEEccCCc-ceeeCcccccccccCC
Q psy14765 102 GVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQIS-SYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYVMVLPG 177 (269)
Q Consensus 102 ~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~~l 177 (269)
++++|++|++++|.++.+++..+ +++|++|++++|.++++. +..++++++|++|++++|. +..+++..|..++. +
T Consensus 72 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~-L 150 (549)
T 2z81_A 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS-L 150 (549)
T ss_dssp TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE-E
T ss_pred ccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccc-c
Confidence 99999999999999999888755 999999999999999753 4568899999999999998 78888888888876 7
Q ss_pred CeeEEeeccccCC
Q psy14765 178 SNLTLDCRVQSAT 190 (269)
Q Consensus 178 ~~l~l~~n~~~~~ 190 (269)
+.+.++.|.+...
T Consensus 151 ~~L~L~~n~l~~~ 163 (549)
T 2z81_A 151 NELEIKALSLRNY 163 (549)
T ss_dssp EEEEEEETTCCEE
T ss_pred CeeeccCCccccc
Confidence 8899998887653
No 39
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=2.4e-20 Score=157.09 Aligned_cols=172 Identities=19% Similarity=0.261 Sum_probs=95.6
Q ss_pred CcEEEcCCCCCcccCCCC-CCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCC
Q psy14765 35 KRTVECIDRNFYTIPEGI-DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~-~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 113 (269)
-+.++++++.++.++.-- .++++.|++++|.++.++ .+. .+++|++|++++|.++++++..|..+++|++|++++
T Consensus 43 L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 43 IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALK--ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred eeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhc--CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 355666666655554311 155666666666666543 233 556666666666666666655556666666666666
Q ss_pred CCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCC
Q psy14765 114 NLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATP 191 (269)
Q Consensus 114 N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~ 191 (269)
|.++.++...+ +++|+.|++++|.++++++..|+.+++|+.|++++|+++++++..+..++. ++.+.+++|.+...+
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ-LKDLRLYQNQLKSVP 197 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCSCCC
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCcc-CCEEECCCCcCCccC
Confidence 66665555544 566666666666666665555556666666666666666665555555544 556666666555544
Q ss_pred ccccceecccccccccccCccc
Q psy14765 192 CRIMWSINRKIYDHVNWNSNKI 213 (269)
Q Consensus 192 ~~~~~~~~~~~l~~l~~~~n~~ 213 (269)
+... .....++.+++.+|.+
T Consensus 198 ~~~~--~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 198 DGVF--DRLTSLQYIWLHDNPW 217 (272)
T ss_dssp TTTT--TTCTTCCEEECCSSCB
T ss_pred HHHH--hCCcCCCEEEccCCCc
Confidence 4321 1122255555555543
No 40
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=3.9e-20 Score=157.29 Aligned_cols=156 Identities=19% Similarity=0.176 Sum_probs=95.9
Q ss_pred cEEEcCCCCCcccCCCC-CCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCC
Q psy14765 36 RTVECIDRNFYTIPEGI-DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114 (269)
Q Consensus 36 ~~v~c~~~~l~~ip~~~-~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 114 (269)
+.+++++|.++.+|... .++|+.|++++|.++.++... . ++++|+.|++++|+|+.+++..|.++++|+.|++++|
T Consensus 58 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-~--~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 58 TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-Q--TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp CEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCT-T--TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred CEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhh-c--cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence 34444444444443321 145666666666666555433 3 5666777777777777666666666777777777777
Q ss_pred CCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCc
Q psy14765 115 LLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPC 192 (269)
Q Consensus 115 ~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~ 192 (269)
+++.++...| +++|+.|+|++|+++++++..|..+++|+.|+|++|+++.++...+.... ++.+.+.+|++. +.|
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~--L~~l~L~~Np~~-C~c 211 (290)
T 1p9a_G 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL--LPFAFLHGNPWL-CNC 211 (290)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCC--CSEEECCSCCBC-CSG
T ss_pred CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhccccc--CCeEEeCCCCcc-CcC
Confidence 7776666665 66677777777777766666666666777777777777766665554432 466667776643 345
Q ss_pred cccce
Q psy14765 193 RIMWS 197 (269)
Q Consensus 193 ~~~~~ 197 (269)
++.|+
T Consensus 212 ~~~~l 216 (290)
T 1p9a_G 212 EILYF 216 (290)
T ss_dssp GGHHH
T ss_pred ccHHH
Confidence 55554
No 41
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=4.7e-20 Score=155.25 Aligned_cols=158 Identities=19% Similarity=0.253 Sum_probs=142.0
Q ss_pred CCcEEEcCCCCCcccCCCC-CCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765 34 GKRTVECIDRNFYTIPEGI-DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (269)
Q Consensus 34 ~~~~v~c~~~~l~~ip~~~-~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 112 (269)
.-+.+++++|.++.++... .++|+.|++++|.++.+++..|. ++++|++|++++|+++.+++..|..+++|++|+++
T Consensus 64 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 64 NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFD--KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141 (272)
T ss_dssp TCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhc--CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECC
Confidence 3679999999999876322 27999999999999999999888 89999999999999999999989999999999999
Q ss_pred CCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCC
Q psy14765 113 DNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSAT 190 (269)
Q Consensus 113 ~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~ 190 (269)
+|.++.++...+ +++|+.|++++|+++++++..|+.+++|+.|++++|+++++++..+..++. ++.+.+++|.+.+.
T Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS-LQYIWLHDNPWDCT 220 (272)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSSCBCCC
T ss_pred CCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC-CCEEEccCCCcccc
Confidence 999999988876 999999999999999999988999999999999999999999988888876 89999999987654
Q ss_pred Cccc
Q psy14765 191 PCRI 194 (269)
Q Consensus 191 ~~~~ 194 (269)
.+.+
T Consensus 221 ~~~l 224 (272)
T 3rfs_A 221 CPGI 224 (272)
T ss_dssp TTTT
T ss_pred CcHH
Confidence 4333
No 42
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=1.9e-20 Score=154.53 Aligned_cols=180 Identities=13% Similarity=0.177 Sum_probs=154.4
Q ss_pred CCcEEEcCCCCCcccCCCCC---CCceEEEeecCC-ccccccccccccCCCcccEEEccc-ccccccchhhhcCCCCCCE
Q psy14765 34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNN-INVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVTNMDE 108 (269)
Q Consensus 34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~-l~~i~~~~f~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~ 108 (269)
.-+.++.++++++.+|...+ ++++.|++++|. ++.+++..|. ++++|++|++++ |+|+.+++.+|.++++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~--~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY--NLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEE--SCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcC--CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 46899999999999998554 799999999997 9999999998 899999999999 9999999999999999999
Q ss_pred EEcCCCCCCCcCCccC-ccccc---eeecCCC-cccccCccccCCCCCCC-EEEccCCcceeeCcccccccccCCCeeEE
Q psy14765 109 LDLSDNLLSTVPSLIY-IPYLK---SINLAHN-PINQISSYSFQSTPGIR-YIDMSNCQIHTIYSEAFYVMVLPGSNLTL 182 (269)
Q Consensus 109 L~L~~N~l~~l~~~~~-l~~L~---~L~L~~N-~i~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~~l~~l~l 182 (269)
|++++|.++.+|. .. +++|+ .|++++| .++++++..|.++++|+ .|++++|+++.++...|.. . .++.+.+
T Consensus 110 L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~-~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-T-KLDAVYL 186 (239)
T ss_dssp EEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-C-EEEEEEC
T ss_pred EeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-C-CCCEEEc
Confidence 9999999999987 33 78887 9999999 99999999999999999 9999999999999988877 3 3689999
Q ss_pred eecc-ccCCCccccceecccccccccccCccccccccc
Q psy14765 183 DCRV-QSATPCRIMWSINRKIYDHVNWNSNKINIKEET 219 (269)
Q Consensus 183 ~~n~-~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~ 219 (269)
+.|. +...++...... ...++.+++.+|.+...+..
T Consensus 187 ~~n~~l~~i~~~~~~~l-~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGV-YSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp TTCTTCCEECTTTTTTC-SBCCSEEECTTCCCCCCCCT
T ss_pred CCCCCcccCCHHHhhcc-ccCCcEEECCCCccccCChh
Confidence 9994 776665432221 03488889999988655443
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=2e-19 Score=155.25 Aligned_cols=177 Identities=18% Similarity=0.283 Sum_probs=137.6
Q ss_pred CcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccc--cchhhhcCCCCCCEEEcC
Q psy14765 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF--VDDRAFRGVTNMDELDLS 112 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~L~ 112 (269)
-+.++.++|.++.+|..++++++.|++++|.++.+++..|. ++++|+.|++++|.++. +.+..|.++++|+.|+++
T Consensus 102 L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 102 LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN--GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp CCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHT--TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred CCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhc--CCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 46777777777777777777777777777777777777777 77888888888888864 666777888888888888
Q ss_pred CCCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCc
Q psy14765 113 DNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPC 192 (269)
Q Consensus 113 ~N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~ 192 (269)
+|.++.+|...+ ++|+.|++++|+++++.+..|..+++|+.|++++|.++++++..+..++. ++.+.+++|.+...|.
T Consensus 180 ~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~lp~ 257 (330)
T 1xku_A 180 DTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH-LRELHLNNNKLVKVPG 257 (330)
T ss_dssp SSCCCSCCSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT-CCEEECCSSCCSSCCT
T ss_pred CCccccCCcccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCC-CCEEECCCCcCccCCh
Confidence 888888776553 78888889888888888888888889999999999999888878877765 7888998888887765
Q ss_pred cccceecccccccccccCcccccccc
Q psy14765 193 RIMWSINRKIYDHVNWNSNKINIKEE 218 (269)
Q Consensus 193 ~~~~~~~~~~l~~l~~~~n~~~~~~~ 218 (269)
.+. ....++.+++.+|.+...+.
T Consensus 258 ~l~---~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 258 GLA---DHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp TTT---TCSSCCEEECCSSCCCCCCT
T ss_pred hhc---cCCCcCEEECCCCcCCccCh
Confidence 443 33447888888888764433
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=1.9e-19 Score=162.13 Aligned_cols=177 Identities=20% Similarity=0.250 Sum_probs=116.8
Q ss_pred CCcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765 34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (269)
Q Consensus 34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 110 (269)
..+.+++++|.++.+++..+ ++|+.|++++|.|+.+++..|. ++++|++|+|++|+|+.+++..|.++++|++|+
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN--GLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhcc--CcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 35789999999998866543 7899999999999998888888 888999999999999988888888888888888
Q ss_pred cCCCCCCCcCCccC--ccccceeecCC-CcccccCccc----------------------cCCCCCCCEEEccCCcceee
Q psy14765 111 LSDNLLSTVPSLIY--IPYLKSINLAH-NPINQISSYS----------------------FQSTPGIRYIDMSNCQIHTI 165 (269)
Q Consensus 111 L~~N~l~~l~~~~~--l~~L~~L~L~~-N~i~~~~~~~----------------------~~~l~~L~~L~L~~N~l~~~ 165 (269)
+++|.++.++...| +++|+.|++++ |.+..+++.. +..+++|+.|+|++|.++++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEE
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCccc
Confidence 88888887766443 44444444443 2333333322 34444555555555555555
Q ss_pred CcccccccccCCCeeEEeeccccCCCccccceecccccccccccCccccc
Q psy14765 166 YSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINI 215 (269)
Q Consensus 166 ~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~ 215 (269)
++..|..++. ++.+.+++|.+...++.. +.....++.+++.+|++..
T Consensus 234 ~~~~~~~l~~-L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 234 RPGSFHGLSS-LKKLWVMNSQVSLIERNA--FDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp CGGGGTTCTT-CCEEECTTSCCCEECTTT--TTTCTTCCEEECCSSCCSC
T ss_pred CcccccCccC-CCEEEeCCCcCceECHHH--hcCCCCCCEEECCCCcCCc
Confidence 5555555554 555666555554443322 1222335566666666543
No 45
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=1.6e-19 Score=159.49 Aligned_cols=135 Identities=21% Similarity=0.372 Sum_probs=115.9
Q ss_pred CcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765 35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 111 (269)
.+.++++++.++.+|..++ ++++.|++++|.++.+++..|. ++++|++|++++|+++.+++..|.++++|++|++
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhcc--CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 3567888888888887653 7899999999999988888887 8899999999999999998888889999999999
Q ss_pred CCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCccccc
Q psy14765 112 SDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171 (269)
Q Consensus 112 ~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 171 (269)
++|.++.+|...| +++|++|++++|.++++++..|+.+++|+.|++++|.++.++...+.
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 186 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP 186 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCT
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccccccc
Confidence 9999999988876 88999999999999998888888899999999999988887655443
No 46
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=174.43 Aligned_cols=159 Identities=20% Similarity=0.192 Sum_probs=137.2
Q ss_pred CCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccc-cccccchhhhcCCC
Q psy14765 26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDDRAFRGVT 104 (269)
Q Consensus 26 ~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~ 104 (269)
.|.|. ...++|++++++.+|. ++++++.|++++|.|+.+.+..|. ++++|++|++++| .+..+++.+|.+++
T Consensus 1 ~C~~~----~~~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~--~l~~L~~LdLs~n~~~~~i~~~~f~~L~ 73 (844)
T 3j0a_A 1 SCSFD----GRIAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFP--FLEQLQLLELGSQYTPLTIDKEAFRNLP 73 (844)
T ss_dssp CCBTT----TEEEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCS--SCCSCSEEEECTTCCCCEECTTTTSSCT
T ss_pred CceEe----ceEEEccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCc--ccccCeEEeCCCCCCccccCHHHhcCCC
Confidence 47776 6899999999999999 889999999999999999988898 8999999999999 56677788999999
Q ss_pred CCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCc--cccCCCCCCCEEEccCCcceeeCc-ccccccccCCCe
Q psy14765 105 NMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISS--YSFQSTPGIRYIDMSNCQIHTIYS-EAFYVMVLPGSN 179 (269)
Q Consensus 105 ~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~~l~~ 179 (269)
+|++|+|++|.++.+.+..| +++|++|+|++|.+++..+ ..|+.+++|++|+|++|.++++.+ ..|..++. ++.
T Consensus 74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~-L~~ 152 (844)
T 3j0a_A 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS-LKS 152 (844)
T ss_dssp TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS-CCE
T ss_pred CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCC-CCE
Confidence 99999999999998866666 9999999999999987433 348899999999999999988765 56777776 788
Q ss_pred eEEeeccccCCCc
Q psy14765 180 LTLDCRVQSATPC 192 (269)
Q Consensus 180 l~l~~n~~~~~~~ 192 (269)
+.++.|.+....+
T Consensus 153 L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 153 IDFSSNQIFLVCE 165 (844)
T ss_dssp EEEESSCCCCCCS
T ss_pred EECCCCcCCeeCH
Confidence 9999888765443
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=3.5e-19 Score=159.80 Aligned_cols=154 Identities=23% Similarity=0.316 Sum_probs=93.4
Q ss_pred cEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhc-----------
Q psy14765 36 RTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR----------- 101 (269)
Q Consensus 36 ~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~----------- 101 (269)
+.++.++|.++.++...+ ++|+.|++++|+++.+++..|. ++++|++|++++|+|+.+++..|.
T Consensus 91 ~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~ 168 (440)
T 3zyj_A 91 EILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV--YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168 (440)
T ss_dssp CEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSC--SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhh--ccccCceeeCCCCcccccCHHHhhhCcccCEeCCC
Confidence 677888888877765433 6777778887777777777776 677777777777777766654444
Q ss_pred --------------CCCCCCEEEcCCCCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCc
Q psy14765 102 --------------GVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYS 167 (269)
Q Consensus 102 --------------~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 167 (269)
++++|+.|++++|.++.+|....+++|+.|+|++|+++++.+..|.++++|+.|+|++|+++.+++
T Consensus 169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 248 (440)
T 3zyj_A 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER 248 (440)
T ss_dssp CCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh
Confidence 444445555555555544431114555555666666665555555555555555555555555555
Q ss_pred ccccccccCCCeeEEeeccccCCCc
Q psy14765 168 EAFYVMVLPGSNLTLDCRVQSATPC 192 (269)
Q Consensus 168 ~~~~~l~~~l~~l~l~~n~~~~~~~ 192 (269)
..|..++. ++.++++.|.+...++
T Consensus 249 ~~~~~l~~-L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 249 NAFDNLQS-LVEINLAHNNLTLLPH 272 (440)
T ss_dssp TSSTTCTT-CCEEECTTSCCCCCCT
T ss_pred hhhcCCCC-CCEEECCCCCCCccCh
Confidence 55555443 4555555555554443
No 48
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=3.2e-20 Score=162.53 Aligned_cols=160 Identities=18% Similarity=0.263 Sum_probs=139.9
Q ss_pred CcEEEcCCCCCcccCCCCC----CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765 35 KRTVECIDRNFYTIPEGID----LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~----~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 110 (269)
.+.+++++|.++.++...+ ++|+.|++++|+|+.+++..|. ++++|+.|+|++|+|+.+++..|.++++|+.|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV--PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc--CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 5789999999999988643 7899999999999999999998 899999999999999999999999999999999
Q ss_pred cCCCCCCCcCCccC--ccccceeecCCCcccccCcccc---CCCCCCCEEEccCCcceeeCcccccccccC-CCeeEEee
Q psy14765 111 LSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSF---QSTPGIRYIDMSNCQIHTIYSEAFYVMVLP-GSNLTLDC 184 (269)
Q Consensus 111 L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~-l~~l~l~~ 184 (269)
|++|+|+.+++..| +++|+.|+|++|+|+.++...| ..+++|+.|+|++|+|+.++...+..++.. +..+.+.+
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 99999999987777 9999999999999999988877 568999999999999999998877766531 36788888
Q ss_pred ccccCCCccccce
Q psy14765 185 RVQSATPCRIMWS 197 (269)
Q Consensus 185 n~~~~~~~~~~~~ 197 (269)
|++. +.|.+.|+
T Consensus 199 N~~~-C~C~l~~~ 210 (361)
T 2xot_A 199 NPLE-CDCKLYQL 210 (361)
T ss_dssp SCEE-CCHHHHHH
T ss_pred CCcc-CCcCcHHH
Confidence 8854 45665543
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=1.6e-19 Score=168.03 Aligned_cols=159 Identities=19% Similarity=0.270 Sum_probs=138.9
Q ss_pred CCcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765 34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (269)
Q Consensus 34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 110 (269)
..+++++++|.|+.+|+..+ ++|+.|++++|+|+.|++++|. ++++|++|+|++|+|+.+++++|.++++|++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~--~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhc--CCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 46899999999999998654 7999999999999999999998 899999999999999999999999999999999
Q ss_pred cCCCCCCCcCCccC--ccccceeecCCCcccccC-ccccCCCCCCCEEEccCCcceeeCccccccccc---CCCeeEEee
Q psy14765 111 LSDNLLSTVPSLIY--IPYLKSINLAHNPINQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVL---PGSNLTLDC 184 (269)
Q Consensus 111 L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~---~l~~l~l~~ 184 (269)
+++|+++.+++..| +++|+.|++++|.++++. +..++.+++|++|++++|+++++++..+..+.. ....+.+..
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 99999999998877 999999999999998864 566788999999999999999999888766542 223566667
Q ss_pred ccccCCCccc
Q psy14765 185 RVQSATPCRI 194 (269)
Q Consensus 185 n~~~~~~~~~ 194 (269)
|.+...++..
T Consensus 211 n~l~~i~~~~ 220 (635)
T 4g8a_A 211 NPMNFIQPGA 220 (635)
T ss_dssp CCCCEECTTT
T ss_pred CcccccCccc
Confidence 7666555443
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=2.9e-19 Score=154.47 Aligned_cols=175 Identities=21% Similarity=0.290 Sum_probs=125.1
Q ss_pred CcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccc--cchhhhcCCCCCCEEEcC
Q psy14765 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF--VDDRAFRGVTNMDELDLS 112 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~L~ 112 (269)
-+.++.++|.++.+|..++++++.|++++|.++.+++..|. ++++|+.|++++|.++. +.+..|..+ +|+.|+++
T Consensus 104 L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 104 LQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFS--GLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGS--SCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhC--CCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 35666666666666666666677777777777766666666 66777777777777653 555566666 67777777
Q ss_pred CCCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCc
Q psy14765 113 DNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPC 192 (269)
Q Consensus 113 ~N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~ 192 (269)
+|.++.+|... .++|+.|++++|.++++++..|..+++|+.|++++|+++++++..+..++. ++.+.+++|.+...|.
T Consensus 181 ~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~lp~ 258 (332)
T 2ft3_A 181 EAKLTGIPKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT-LRELHLDNNKLSRVPA 258 (332)
T ss_dssp SSBCSSCCSSS-CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTT-CCEEECCSSCCCBCCT
T ss_pred CCCCCccCccc-cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCC-CCEEECCCCcCeecCh
Confidence 77777666544 367888888888888887777888888888888888888888777777765 7888888888877765
Q ss_pred cccceecccccccccccCccccccc
Q psy14765 193 RIMWSINRKIYDHVNWNSNKINIKE 217 (269)
Q Consensus 193 ~~~~~~~~~~l~~l~~~~n~~~~~~ 217 (269)
.+. ....++.+++.+|.+...+
T Consensus 259 ~l~---~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 259 GLP---DLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp TGG---GCTTCCEEECCSSCCCBCC
T ss_pred hhh---cCccCCEEECCCCCCCccC
Confidence 443 3334777888888776443
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=3.5e-19 Score=165.81 Aligned_cols=134 Identities=21% Similarity=0.371 Sum_probs=118.2
Q ss_pred cEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765 36 RTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (269)
Q Consensus 36 ~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 112 (269)
+.++++++.+..+|..++ ++|+.|++++|.++.+++..|. ++++|++|++++|.|+++++..|.++++|++|+|+
T Consensus 54 ~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp SEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhc--CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 677788888888887653 7899999999999999988888 88999999999999999999889999999999999
Q ss_pred CCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCccccc
Q psy14765 113 DNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171 (269)
Q Consensus 113 ~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 171 (269)
+|.++.+|...| +++|+.|++++|.++++++..|+.+++|+.|++++|.+++++...+.
T Consensus 132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 192 (597)
T 3oja_B 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP 192 (597)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCT
T ss_pred CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhh
Confidence 999999998876 89999999999999999888899999999999999999887655443
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=2e-19 Score=154.53 Aligned_cols=196 Identities=16% Similarity=0.136 Sum_probs=144.0
Q ss_pred CCcEEEcCCCCCc---ccCCCCC--CCceEEEeec-CCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCC
Q psy14765 34 GKRTVECIDRNFY---TIPEGID--LDTQVLDLSS-NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107 (269)
Q Consensus 34 ~~~~v~c~~~~l~---~ip~~~~--~~l~~L~l~~-n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 107 (269)
..+.++++++.+. .+|..+. ++|+.|++++ |.+....+..|. .+++|++|++++|++++..|..|..+++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA--KLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG--GCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh--cCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 3568889999998 4777665 7999999995 988855555566 899999999999999987788899999999
Q ss_pred EEEcCCCCCC-CcCCccC-ccccceeecCCCcccccCccccCCCC-CCCEEEccCCcceeeCcccccccccCCCeeEEee
Q psy14765 108 ELDLSDNLLS-TVPSLIY-IPYLKSINLAHNPINQISSYSFQSTP-GIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDC 184 (269)
Q Consensus 108 ~L~L~~N~l~-~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~ 184 (269)
+|++++|.++ .+|.... +++|++|++++|++++..+..+..++ +|+.|++++|++++..+..+..+. ++.+.++.
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~--L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC--CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc--ccEEECcC
Confidence 9999999999 5665555 99999999999999977777788887 899999999999877777777765 57888887
Q ss_pred ccccCCCccccceecccccccccccCccccccccceeecCCCeeeeeeccc
Q psy14765 185 RVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSGGV 235 (269)
Q Consensus 185 n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~n 235 (269)
|.+....+.. +.....++.+++.+|.+......+....+...+.+..+.
T Consensus 207 N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 207 NMLEGDASVL--FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255 (313)
T ss_dssp SEEEECCGGG--CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC
T ss_pred CcccCcCCHH--HhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCc
Confidence 7766544322 222233555566666554332333333333444444333
No 53
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=7.6e-19 Score=155.04 Aligned_cols=105 Identities=18% Similarity=0.241 Sum_probs=57.3
Q ss_pred CcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765 35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 111 (269)
-+.++.+++.++.+|+... ++|+.|++++|.++.+++..|. ++++|++|++++|+++.+++..|..+++|++|++
T Consensus 71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ--NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc--CCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 3455666666555554222 4555555555555555555555 5555555555555555555555555555555555
Q ss_pred CCCCCCCcCCccC--ccccceeecCCCccccc
Q psy14765 112 SDNLLSTVPSLIY--IPYLKSINLAHNPINQI 141 (269)
Q Consensus 112 ~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~ 141 (269)
++|.++.+++..+ +++|+.|++++|+++++
T Consensus 149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred CCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 5555555544433 55555555555555443
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=3.7e-19 Score=152.80 Aligned_cols=176 Identities=12% Similarity=0.081 Sum_probs=79.7
Q ss_pred CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCC-CcCCccC-cc-ccce
Q psy14765 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS-TVPSLIY-IP-YLKS 130 (269)
Q Consensus 54 ~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~-l~-~L~~ 130 (269)
++|+.|++++|.++...+..|. ++++|++|++++|.+++..|..|..+++|++|++++|.++ .+|...+ ++ +|+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~ 178 (313)
T 1ogq_A 101 TQLHYLYITHTNVSGAIPDFLS--QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178 (313)
T ss_dssp TTCSEEEEEEECCEEECCGGGG--GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCE
T ss_pred CCCCEEECcCCeeCCcCCHHHh--CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcE
Confidence 4455555555555433333333 4455555555555555444444555555555555555554 3444333 33 4555
Q ss_pred eecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCccccceecccccccccccC
Q psy14765 131 INLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNS 210 (269)
Q Consensus 131 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~ 210 (269)
|++++|++++..+..+..+. |+.|++++|.+++..+..|..++. ++.+.++.|.+....+.+.. ...++.+++.+
T Consensus 179 L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~---l~~L~~L~Ls~ 253 (313)
T 1ogq_A 179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKN-TQKIHLAKNSLAFDLGKVGL---SKNLNGLDLRN 253 (313)
T ss_dssp EECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSC-CSEEECCSSEECCBGGGCCC---CTTCCEEECCS
T ss_pred EECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCC-CCEEECCCCceeeecCcccc---cCCCCEEECcC
Confidence 55555555544444444443 555555555555544444444443 44555554444433322211 12244444444
Q ss_pred cccc-ccccceeecCCCeeeeeeccce
Q psy14765 211 NKIN-IKEETVLSKDNSYLSVFSGGVD 236 (269)
Q Consensus 211 n~~~-~~~~~~~~~~~~~~~~~~~~n~ 236 (269)
|.+. ..+..+........+.+..+.+
T Consensus 254 N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 254 NRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp SCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred CcccCcCChHHhcCcCCCEEECcCCcc
Confidence 4443 3333333333334444444433
No 55
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.80 E-value=5.5e-19 Score=159.87 Aligned_cols=156 Identities=21% Similarity=0.297 Sum_probs=135.3
Q ss_pred CCcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765 34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (269)
Q Consensus 34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 110 (269)
..+.+++++|.++.+++..+ ++|+.|++++|.++.+.+..|. ++++|++|++++|+++.+++..|.++++|++|+
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN--NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh--CCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 35789999999999876444 7899999999999999888888 899999999999999999988899999999999
Q ss_pred cCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeecccc
Q psy14765 111 LSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQS 188 (269)
Q Consensus 111 L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~ 188 (269)
+++|.++.+++..+ +++|+.|++++|.+.++.+..|.++++|+.|++++|.++++++..+..++. ++.+.+..|.+.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~i~ 189 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG-LIVLRLRHLNIN 189 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT-CCEEEEESCCCC
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC-CcEEeCCCCcCc
Confidence 99999998877666 899999999999999998888999999999999999999888877777765 778888877765
Q ss_pred CCCc
Q psy14765 189 ATPC 192 (269)
Q Consensus 189 ~~~~ 192 (269)
..+.
T Consensus 190 ~~~~ 193 (477)
T 2id5_A 190 AIRD 193 (477)
T ss_dssp EECT
T ss_pred EeCh
Confidence 5443
No 56
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=6.6e-19 Score=143.76 Aligned_cols=130 Identities=19% Similarity=0.281 Sum_probs=121.4
Q ss_pred CCcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765 34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (269)
Q Consensus 34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 110 (269)
..+.+++++|.++.+|...+ ++|+.|++++|.|+.+.+..|. ++++|++|+|++|+|+.+++..|.++++|+.|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ--GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTT--TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh--CCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 35899999999999988554 7899999999999999999998 999999999999999999999999999999999
Q ss_pred cCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceee
Q psy14765 111 LSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165 (269)
Q Consensus 111 L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 165 (269)
|++|+|+.+++..| +++|+.|+|++|+++++++..|..+++|+.|+|++|.+...
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 99999999987777 99999999999999999998999999999999999999764
No 57
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=8.2e-19 Score=160.35 Aligned_cols=146 Identities=18% Similarity=0.314 Sum_probs=131.9
Q ss_pred CcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCC
Q psy14765 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 114 (269)
.+.++|++++++.+|..++++++.|++++|.++.+++..|. ++++|++|++++|+|+++.+..|.++++|++|++++|
T Consensus 2 ~~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 2 EFLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDIL--SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CCEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHT--TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred cceEecCCCCcccccccccccccEEECCCCcccccChhhcc--ccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 47899999999999999999999999999999999998888 8999999999999999999999999999999999999
Q ss_pred CCCCcCCccCccccceeecCCCcccccC-ccccCCCCCCCEEEccCCcceeeCcccccccccCC--CeeEEeeccc
Q psy14765 115 LLSTVPSLIYIPYLKSINLAHNPINQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPG--SNLTLDCRVQ 187 (269)
Q Consensus 115 ~l~~l~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l--~~l~l~~n~~ 187 (269)
+++.+|.. .+++|++|++++|++++++ |..|+++++|++|++++|.+++. .+..+.. + +.+.++.|.+
T Consensus 80 ~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~-L~L~~L~l~~n~l 150 (520)
T 2z7x_B 80 KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAH-LNISKVLLVLGET 150 (520)
T ss_dssp CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTT-SCEEEEEEEECTT
T ss_pred ceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hcccccc-ceeeEEEeecccc
Confidence 99999877 6999999999999999863 57899999999999999999873 3444443 4 8888888876
No 58
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=142.21 Aligned_cols=130 Identities=17% Similarity=0.339 Sum_probs=120.1
Q ss_pred CcEEEcCCCCCcccCC-CCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765 35 KRTVECIDRNFYTIPE-GID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~-~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 110 (269)
.+.+++++|.++.+++ ..+ ++|+.|++++|.|+.+++..|. ++++|++|++++|+|+.+++..|.++++|++|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE--GASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhC--CCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 4789999999999854 433 7999999999999999999998 999999999999999999999999999999999
Q ss_pred cCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeC
Q psy14765 111 LSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY 166 (269)
Q Consensus 111 L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 166 (269)
+++|+|+.+++..| +++|+.|+|++|+++++.+..|..+++|+.|+|++|.++...
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 99999999977776 999999999999999999999999999999999999998643
No 59
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=1.3e-18 Score=162.00 Aligned_cols=105 Identities=18% Similarity=0.241 Sum_probs=67.5
Q ss_pred CcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765 35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 111 (269)
-+.++++++.++.+|+... ++|+.|++++|.++.+++..|. ++++|++|++++|.|+.+++..|.++++|++|++
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ--NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc--CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 4567777777766655332 5666777777777666666665 6666667777666666666666666666666666
Q ss_pred CCCCCCCcCCccC--ccccceeecCCCccccc
Q psy14765 112 SDNLLSTVPSLIY--IPYLKSINLAHNPINQI 141 (269)
Q Consensus 112 ~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~ 141 (269)
++|.++.+++..+ +++|+.|++++|.++++
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 6666666655444 66666666666665544
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=7.2e-19 Score=152.02 Aligned_cols=197 Identities=12% Similarity=0.122 Sum_probs=149.7
Q ss_pred CCCcEEEcCCCCCcccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765 33 AGKRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (269)
Q Consensus 33 ~~~~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 110 (269)
.....++++++.++.+|..+. ++|+.|++++|.++.+|... . .+++|++|++++|+++.++ ..|..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~-~--~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM-Q--QFAGLETLTLARNPLRALP-ASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCG-G--GGTTCSEEEEESCCCCCCC-GGGGGCTTCCEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHH-h--ccCCCCEEECCCCccccCc-HHHhcCcCCCEEE
Confidence 456799999999999999876 79999999999999887654 4 7899999999999999774 5688999999999
Q ss_pred cCCCCCC-CcCCcc--------C--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCe
Q psy14765 111 LSDNLLS-TVPSLI--------Y--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSN 179 (269)
Q Consensus 111 L~~N~l~-~l~~~~--------~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~ 179 (269)
+++|.+. .+|... + +++|+.|++++|+++.++ ..++.+++|+.|++++|.++++++. +..++. ++.
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~-L~~ 233 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSALGPA-IHHLPK-LEE 233 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCCCCCGG-GGGCTT-CCE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCCcCchh-hccCCC-CCE
Confidence 9996554 677654 2 788999999999998774 4588889999999999999988764 666665 788
Q ss_pred eEEeecccc-CCCccccceecccccccccccCccc-cccccceeecCCCeeeeeeccceeee
Q psy14765 180 LTLDCRVQS-ATPCRIMWSINRKIYDHVNWNSNKI-NIKEETVLSKDNSYLSVFSGGVDLAA 239 (269)
Q Consensus 180 l~l~~n~~~-~~~~~~~~~~~~~~l~~l~~~~n~~-~~~~~~~~~~~~~~~~~~~~~n~~~~ 239 (269)
+.+++|.+. ..+..+. ....++.+++.+|.+ +..+..+........+.+..++..+.
T Consensus 234 L~Ls~n~~~~~~p~~~~---~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFG---GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp EECTTCTTCCBCCCCTT---CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred EECcCCcchhhhHHHhc---CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 888875544 3333332 233477778777543 55666666666666666666655543
No 61
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=2e-18 Score=141.76 Aligned_cols=131 Identities=18% Similarity=0.249 Sum_probs=121.4
Q ss_pred CCcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765 34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (269)
Q Consensus 34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 110 (269)
.-+.+++++|.++.+++..+ ++|+.|++++|+|+.+++..|. ++++|+.|+|++|+|+.+++..|..+++|+.|+
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD--SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc--cCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 35799999999999866443 7999999999999999999998 899999999999999999999999999999999
Q ss_pred cCCCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeC
Q psy14765 111 LSDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY 166 (269)
Q Consensus 111 L~~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 166 (269)
+++|+|+.+|..+. +++|+.|+|++|+++++++..|..+++|+.|++++|.+..-.
T Consensus 119 Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 119 MCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred ccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 99999999998887 999999999999999999888999999999999999998643
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=6.5e-19 Score=150.44 Aligned_cols=198 Identities=15% Similarity=0.200 Sum_probs=129.3
Q ss_pred CcEEEcCCCCCccc---CCCC--CCCceEEEeecCCccccccccccccCCCcccEEEcccccccccch-hhhcCCCCCCE
Q psy14765 35 KRTVECIDRNFYTI---PEGI--DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD-RAFRGVTNMDE 108 (269)
Q Consensus 35 ~~~v~c~~~~l~~i---p~~~--~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~ 108 (269)
-+.++.++|.++.+ |... .++|+.|++++|.+..++.. |. ++++|++|++++|+++.+++ ..|..+++|++
T Consensus 54 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~-~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 130 (306)
T 2z66_A 54 LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FL--GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 130 (306)
T ss_dssp CSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE-EE--TCTTCCEEECTTSEEESSTTTTTTTTCTTCCE
T ss_pred CCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh-cC--CCCCCCEEECCCCcccccccchhhhhccCCCE
Confidence 46788888777654 2211 26778888888887777665 33 67778888888887777765 56777777888
Q ss_pred EEcCCCCCCCcCCccC--ccccceeecCCCcccc-cCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeec
Q psy14765 109 LDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQ-ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCR 185 (269)
Q Consensus 109 L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n 185 (269)
|++++|.++.+....+ +++|+.|++++|.+++ ..+..+..+++|+.|++++|.++++++..+..++. ++.+.+++|
T Consensus 131 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~N 209 (306)
T 2z66_A 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS-LQVLNMSHN 209 (306)
T ss_dssp EECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCEEECTTS
T ss_pred EECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC-CCEEECCCC
Confidence 8888887776655555 7777788887777776 44566777777778888877777777777766665 677777777
Q ss_pred cccCCCccccceecccccccccccCccccc-cccceeec-CCCeeeeeeccceee
Q psy14765 186 VQSATPCRIMWSINRKIYDHVNWNSNKINI-KEETVLSK-DNSYLSVFSGGVDLA 238 (269)
Q Consensus 186 ~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~-~~~~~~~~-~~~~~~~~~~~n~~~ 238 (269)
.+...++.. +.....++.+++.+|.+.. .+..+... .....+.+.++.+.|
T Consensus 210 ~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 210 NFFSLDTFP--YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCSBCCSGG--GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ccCccChhh--ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 766655432 2223346677777776643 22333333 234444444444433
No 63
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.78 E-value=2e-18 Score=160.46 Aligned_cols=153 Identities=20% Similarity=0.226 Sum_probs=127.4
Q ss_pred CcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765 35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 111 (269)
.+.+++++|.++.+++..+ ++|++|++++|.++.+.+..|. ++++|++|++++|+++.+.+.+|.++++|++|++
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ--SQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhcc--CccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 5799999999999866443 7899999999999999999898 8999999999999999999999999999999999
Q ss_pred CCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCC--eeEEeeccc
Q psy14765 112 SDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGS--NLTLDCRVQ 187 (269)
Q Consensus 112 ~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~--~l~l~~n~~ 187 (269)
++|.++.+++..+ +++|++|++++|+++++....+..+++|+.|++++|.++++++..|..+.. ++ .+.++.|.+
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~l~L~l~~n~l 191 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ-ATNLSLNLNGNDI 191 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTT-CCSEEEECTTCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcc-cceeEEecCCCcc
Confidence 9999998865555 899999999999999876555666889999999999998888777766654 34 455555554
Q ss_pred cCC
Q psy14765 188 SAT 190 (269)
Q Consensus 188 ~~~ 190 (269)
...
T Consensus 192 ~~~ 194 (606)
T 3t6q_A 192 AGI 194 (606)
T ss_dssp CEE
T ss_pred Ccc
Confidence 443
No 64
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=138.81 Aligned_cols=134 Identities=22% Similarity=0.378 Sum_probs=122.2
Q ss_pred eEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecC
Q psy14765 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLA 134 (269)
Q Consensus 57 ~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~ 134 (269)
+.+++++|.++.+|...+ ++|+.|++++|+|+.++ ..|.++++|+.|++++|.|+.++...| +++|+.|+|+
T Consensus 13 ~~l~~~~~~l~~ip~~~~-----~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP-----RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCSSCCSCCC-----TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCCcCCCCCC-----CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 579999999999998764 57999999999999887 689999999999999999999998877 9999999999
Q ss_pred CCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCcccccee
Q psy14765 135 HNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSI 198 (269)
Q Consensus 135 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~~ 198 (269)
+|+|+++++..|.++++|+.|+|++|+|+.+++..|..++. +..+.+++|++. +.|.+.|+.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~~~-C~c~l~~l~ 148 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA-LSHLAIGANPLY-CDCNMQWLS 148 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT-CCEEECCSSCEE-CSGGGHHHH
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcc-ccEEEeCCCCee-cCCcCHHHH
Confidence 99999999999999999999999999999999999988876 799999999955 477788874
No 65
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.77 E-value=2.2e-18 Score=160.25 Aligned_cols=175 Identities=18% Similarity=0.217 Sum_probs=151.1
Q ss_pred CCcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765 34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (269)
Q Consensus 34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 110 (269)
..++++++++.++.+++..+ ++|+.|++++|.++.+++..|. ++++|++|++++|+++.+.|..|.++++|++|+
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH--GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhh--chhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 35799999999999887544 7999999999999999999998 899999999999999999999999999999999
Q ss_pred cCCCCCCCcCCccC--ccccceeecCCCcccccC-ccccCCCCCCCEEEccCCcceeeCcccccccccC---CCeeEEee
Q psy14765 111 LSDNLLSTVPSLIY--IPYLKSINLAHNPINQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLP---GSNLTLDC 184 (269)
Q Consensus 111 L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~---l~~l~l~~ 184 (269)
+++|.++.+++..+ +++|++|++++|.+.++. |..|+++++|++|++++|.++++++..+..+... +..+.++.
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 99999999886556 999999999999999754 7779999999999999999999998888776642 34788889
Q ss_pred ccccCCCccccceecccccccccccCccc
Q psy14765 185 RVQSATPCRIMWSINRKIYDHVNWNSNKI 213 (269)
Q Consensus 185 n~~~~~~~~~~~~~~~~~l~~l~~~~n~~ 213 (269)
|.+...++...... .++.+++.+|.+
T Consensus 191 n~l~~~~~~~~~~~---~L~~L~L~~n~~ 216 (606)
T 3vq2_A 191 NPIDFIQDQAFQGI---KLHELTLRGNFN 216 (606)
T ss_dssp CCCCEECTTTTTTC---EEEEEEEESCCS
T ss_pred CCcceeCcccccCc---eeeeeeccCCcc
Confidence 98887776554433 377777777765
No 66
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=6.9e-18 Score=136.21 Aligned_cols=130 Identities=20% Similarity=0.364 Sum_probs=120.7
Q ss_pred CCcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765 34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (269)
Q Consensus 34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 110 (269)
.-+.++.++++++.+|.... ++|+.|++++|+++.+++..|. ++++|++|++++|+|+.+++..|..+++|++|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN--KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcC--CCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 35799999999999988654 7999999999999999999988 899999999999999999998899999999999
Q ss_pred cCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceee
Q psy14765 111 LSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165 (269)
Q Consensus 111 L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 165 (269)
+++|+++.++...+ +++|+.|++++|+++++++..|..+++|+.|++++|.+.+.
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 163 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 163 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC
Confidence 99999999998876 99999999999999999888899999999999999988754
No 67
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.77 E-value=2.3e-18 Score=148.79 Aligned_cols=192 Identities=15% Similarity=0.233 Sum_probs=143.2
Q ss_pred CCcEEEcCCCCCcccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhc---------C
Q psy14765 34 GKRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR---------G 102 (269)
Q Consensus 34 ~~~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~---------~ 102 (269)
.-+.++.++|.++.+|..+. ++|+.|++++|.++.+|... . ++++|++|++++|++.+..|..+. +
T Consensus 105 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l-~--~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 105 HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASI-A--SLNRLRELSIRACPELTELPEPLASTDASGEHQG 181 (328)
T ss_dssp TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGG-G--GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred CCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHH-h--cCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence 35788888888888887665 78889999999888887654 4 788899999988766655555443 4
Q ss_pred CCCCCEEEcCCCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeE
Q psy14765 103 VTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLT 181 (269)
Q Consensus 103 l~~L~~L~L~~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~ 181 (269)
+++|++|++++|.++.+|.... +++|+.|++++|+++++++ .++.+++|+.|++++|.+.+..+..+..++. ++.+.
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~-L~~L~ 259 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAP-LKRLI 259 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCC-CCEEE
T ss_pred CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCch-hhccCCCCCEEECcCCcchhhhHHHhcCCCC-CCEEE
Confidence 8888999999998888887766 8889999999998888755 4888888999999988888777777777776 78888
Q ss_pred Eeecc-ccCCCccccceecccccccccccCccc-cccccceeecCCCeeeeeec
Q psy14765 182 LDCRV-QSATPCRIMWSINRKIYDHVNWNSNKI-NIKEETVLSKDNSYLSVFSG 233 (269)
Q Consensus 182 l~~n~-~~~~~~~~~~~~~~~~l~~l~~~~n~~-~~~~~~~~~~~~~~~~~~~~ 233 (269)
++.|. .+..|..+ .....++.+++.+|.+ +..|..+..........+..
T Consensus 260 L~~n~~~~~~p~~~---~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 260 LKDCSNLLTLPLDI---HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CTTCTTCCBCCTTG---GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCCCCchhhcchhh---hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 87654 44444333 3334477888877654 66667777777666555543
No 68
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=4.6e-18 Score=156.86 Aligned_cols=178 Identities=16% Similarity=0.220 Sum_probs=147.1
Q ss_pred CCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCC
Q psy14765 34 GKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113 (269)
Q Consensus 34 ~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 113 (269)
.-+.+++++++++.+|..++++++.|++++|.|+.+| . .+++|+.|++++|+|++++. |.+ +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip-~-----~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP-E-----LPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC-C-----CCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc-c-----ccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence 4789999999999999999999999999999999988 2 46899999999999999865 554 899999999
Q ss_pred CCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCcc
Q psy14765 114 NLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCR 193 (269)
Q Consensus 114 N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~ 193 (269)
|.|+.+|. .+++|+.|++++|.|++++. .+++|+.|+|++|+|+++|. |. ..++.+.+++|.+...|.
T Consensus 130 N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~---~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 130 NQLTMLPE--LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP---ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC---TTCCEEECCSSCCSSCCC-
T ss_pred CcCCCCCC--cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh---CCCCEEECcCCCCCchhh-
Confidence 99999888 58899999999999999865 56889999999999999876 44 347899999998887775
Q ss_pred ccceeccccc-------ccccccCccccccccceeecCCCeeeeeeccceee
Q psy14765 194 IMWSINRKIY-------DHVNWNSNKINIKEETVLSKDNSYLSVFSGGVDLA 238 (269)
Q Consensus 194 ~~~~~~~~~l-------~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~ 238 (269)
+.. .+ +.+++.+|.+...+..+....+...+.+..+.+.+
T Consensus 198 ~~~-----~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 198 VPV-----RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CC-------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred HHH-----hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 322 25 78888899888777777777777767666665544
No 69
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=2.9e-18 Score=137.02 Aligned_cols=135 Identities=17% Similarity=0.330 Sum_probs=121.4
Q ss_pred eEEEeecCCccccccccccccCCCcccEEEcccccccccchh-hhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeec
Q psy14765 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR-AFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL 133 (269)
Q Consensus 57 ~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L 133 (269)
+.+++++|.++.+|...+ .+|+.|++++|+|+.+++. .|..+++|++|++++|+|+.+++..| +++|+.|+|
T Consensus 11 ~~l~~s~~~l~~ip~~~~-----~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-----LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-----TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCcCccCCC-----CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 679999999999998765 3899999999999999875 58999999999999999999876666 999999999
Q ss_pred CCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCcccccee
Q psy14765 134 AHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSI 198 (269)
Q Consensus 134 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~~ 198 (269)
++|+|+++++..|+++++|++|+|++|++++++++.|..++. ++.+.+++|.+.+ .+.+.|+.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~c-~c~l~~~~ 148 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS-LTSLNLASNPFNC-NCHLAWFA 148 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT-CCEEECTTCCBCC-SGGGHHHH
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCC-CCEEEeCCCCccC-cCcchHHH
Confidence 999999999999999999999999999999999999988876 7999999999664 56677763
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=1.5e-17 Score=142.45 Aligned_cols=164 Identities=21% Similarity=0.271 Sum_probs=107.9
Q ss_pred CcEEEcCCCCCcccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765 35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 112 (269)
-+.++++++.++.+|. +. ++++.|++++|.++.+++ +. .+++|++|++++|+++.++ .+..+++|++|+++
T Consensus 43 L~~L~l~~~~i~~l~~-~~~l~~L~~L~L~~n~i~~~~~--~~--~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 43 ITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAP--LK--NLTKITELELSGNPLKNVS--AIAGLQSIKTLDLT 115 (308)
T ss_dssp CCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GT--TCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECT
T ss_pred cCEEEeeCCCccCchh-hhccCCCCEEEccCCcCCCChh--Hc--cCCCCCEEEccCCcCCCch--hhcCCCCCCEEECC
Confidence 4677777777777663 22 677777777777777766 44 6777777777777777764 46677777777777
Q ss_pred CCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCC
Q psy14765 113 DNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATP 191 (269)
Q Consensus 113 ~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~ 191 (269)
+|.++.++. .. +++|+.|++++|.++++++ ++.+++|+.|++++|.++++++ +..++. ++.+.+++|.+...+
T Consensus 116 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~-L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 116 STQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSK-LTTLKADDNKISDIS 189 (308)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTT-CCEEECCSSCCCCCG
T ss_pred CCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCC-CCEEECCCCccCcCh
Confidence 777776654 23 7777777777777776654 6666777777777777776654 455544 566667666665554
Q ss_pred ccccceecccccccccccCccccc
Q psy14765 192 CRIMWSINRKIYDHVNWNSNKINI 215 (269)
Q Consensus 192 ~~~~~~~~~~~l~~l~~~~n~~~~ 215 (269)
+ +.....++.+++.+|.+..
T Consensus 190 ~----l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 190 P----LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp G----GGGCTTCCEEECTTSCCCB
T ss_pred h----hcCCCCCCEEEccCCccCc
Confidence 3 2223336666666666543
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=1.2e-18 Score=149.41 Aligned_cols=170 Identities=14% Similarity=0.139 Sum_probs=76.2
Q ss_pred cEEEcCCCCCc-ccCCCC----CCCceEEEeecCCccccccccccccCC-----CcccEEEcccccccccchhhhcCCCC
Q psy14765 36 RTVECIDRNFY-TIPEGI----DLDTQVLDLSSNNINVLQKEIFLQMGI-----TNIQKLYLRKCKLEFVDDRAFRGVTN 105 (269)
Q Consensus 36 ~~v~c~~~~l~-~ip~~~----~~~l~~L~l~~n~l~~i~~~~f~~~~l-----~~L~~L~L~~N~i~~~~~~~~~~l~~ 105 (269)
+.++.+++.++ .+|..+ .++++.|++++|.++.+ +..|. ++ ++|++|++++|+|+++++..|..+++
T Consensus 98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~--~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLA--ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHH--HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHH--HHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 44555555554 244432 14555555555555544 22232 23 45555555555555555455555555
Q ss_pred CCEEEcCCCCCCC---cCCcc--C-ccccceeecCCCccccc---CccccCCCCCCCEEEccCCcceeeCc-cccccccc
Q psy14765 106 MDELDLSDNLLST---VPSLI--Y-IPYLKSINLAHNPINQI---SSYSFQSTPGIRYIDMSNCQIHTIYS-EAFYVMVL 175 (269)
Q Consensus 106 L~~L~L~~N~l~~---l~~~~--~-l~~L~~L~L~~N~i~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~ 175 (269)
|++|++++|++.. ++... . +++|+.|++++|+++++ ....+..+++|+.|++++|++++.++ ..+..+..
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 5555555555432 11111 1 45555555555555422 12223344455555555555554432 22222222
Q ss_pred CCCeeEEeeccccCCCccccceecccccccccccCcccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKIN 214 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~ 214 (269)
++.+.++.|.+...|..+. ..++.+++++|++.
T Consensus 255 -L~~L~Ls~N~l~~ip~~~~-----~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 255 -LNSLNLSFTGLKQVPKGLP-----AKLSVLDLSYNRLD 287 (312)
T ss_dssp -CCEEECTTSCCSSCCSSCC-----SEEEEEECCSSCCC
T ss_pred -CCEEECCCCccChhhhhcc-----CCceEEECCCCCCC
Confidence 4555555555544443332 12444455555443
No 72
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.75 E-value=7.7e-18 Score=155.25 Aligned_cols=171 Identities=19% Similarity=0.262 Sum_probs=146.2
Q ss_pred CcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765 35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 111 (269)
.+.++++++.++.+++..+ ++|+.|++++|.++.+++..|. ++++|++|++++|+++.+++.+|.++++|++|++
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccccc--CchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 5789999999999886543 7999999999999999999998 8999999999999999999999999999999999
Q ss_pred CCCCCCCcCCccC--ccccceeecCCCcccccC-ccccCCCCCCCEEEccCCcceeeCcccccccccCC----CeeEEee
Q psy14765 112 SDNLLSTVPSLIY--IPYLKSINLAHNPINQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPG----SNLTLDC 184 (269)
Q Consensus 112 ~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l----~~l~l~~ 184 (269)
++|.++.++...+ +++|++|++++|.++++. |..|+++++|+.|++++|.++++++..+..+.. + ..+.++.
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~~~~~L~l~~ 186 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ-MPLLNLSLDLSL 186 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHT-CTTCCCEEECTT
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhc-cchhhhhcccCC
Confidence 9999999987656 999999999999999864 677999999999999999999999888876654 3 6788888
Q ss_pred ccccCCCccccceecccccccccccCc
Q psy14765 185 RVQSATPCRIMWSINRKIYDHVNWNSN 211 (269)
Q Consensus 185 n~~~~~~~~~~~~~~~~~l~~l~~~~n 211 (269)
|.+...++...... .++.+++.+|
T Consensus 187 n~l~~~~~~~~~~~---~L~~L~l~~n 210 (570)
T 2z63_A 187 NPMNFIQPGAFKEI---RLHKLTLRNN 210 (570)
T ss_dssp CCCCEECTTTTTTC---EEEEEEEESC
T ss_pred CCceecCHHHhccC---cceeEecccc
Confidence 88777665544332 2555555544
No 73
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.75 E-value=1.2e-17 Score=157.33 Aligned_cols=157 Identities=18% Similarity=0.231 Sum_probs=135.8
Q ss_pred CCcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765 34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (269)
Q Consensus 34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 110 (269)
..+.++++++.++.+|+..+ ++++.|++++|.++.+++..|. ++++|++|++++|+++.+++.+|.++++|++|+
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ--KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHH--HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHh--cccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 36899999999999887543 7899999999999999999888 899999999999999999988899999999999
Q ss_pred cCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccc-cCCCeeEEeeccc
Q psy14765 111 LSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMV-LPGSNLTLDCRVQ 187 (269)
Q Consensus 111 L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~~l~~l~l~~n~~ 187 (269)
+++|.++.+++..+ +++|++|++++|.++++.+..++++++|++|++++|.++++++..+.... ..++.+.++.|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 99999999987766 99999999999999999888899999999999999999998877654321 1257788877776
Q ss_pred cCCCc
Q psy14765 188 SATPC 192 (269)
Q Consensus 188 ~~~~~ 192 (269)
...++
T Consensus 184 ~~~~~ 188 (680)
T 1ziw_A 184 KEFSP 188 (680)
T ss_dssp CCBCT
T ss_pred cccCh
Confidence 65544
No 74
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.75 E-value=2e-17 Score=158.14 Aligned_cols=126 Identities=16% Similarity=0.188 Sum_probs=57.4
Q ss_pred cEEEcCCCCCcc-cCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765 36 RTVECIDRNFYT-IPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (269)
Q Consensus 36 ~~v~c~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 112 (269)
+.+++++|.+.. +|..+. ++++.|++++|.+....+..|. .+++|+.|++++|++++..|..|.++++|++|+++
T Consensus 421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 498 (768)
T 3rgz_A 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM--YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498 (768)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc--CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence 455555555542 333222 4455555555555533333333 44445555555555544444444444455555555
Q ss_pred CCCCC-CcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcce
Q psy14765 113 DNLLS-TVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIH 163 (269)
Q Consensus 113 ~N~l~-~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 163 (269)
+|+++ .+|..+. +++|+.|++++|++++..|..++.+++|+.|++++|.++
T Consensus 499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 55444 2333222 444444444444444444444444444444444444443
No 75
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.74 E-value=9.4e-18 Score=132.04 Aligned_cols=136 Identities=16% Similarity=0.255 Sum_probs=122.1
Q ss_pred ceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeec
Q psy14765 56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL 133 (269)
Q Consensus 56 l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L 133 (269)
.+.+++++++++.+|...+ ++|+.|++++|+++++++..|..+++|++|++++|.++.++...+ +++|+.|++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~-----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP-----SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCccCCCCCC-----CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 4679999999999997653 689999999999999999889999999999999999999998876 999999999
Q ss_pred CCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCccccce
Q psy14765 134 AHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWS 197 (269)
Q Consensus 134 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~ 197 (269)
++|+++++++..|..+++|+.|++++|.+++++++.+..++. ++.+.++.|.+.+..+.+.|+
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~l~~N~~~~~~~~l~~l 146 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTS-LQKIWLHTNPWDCSCPRIDYL 146 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSSCBCCCHHHHHHH
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcc-cCEEEecCCCeeccCccHHHH
Confidence 999999999888999999999999999999999988887776 799999999977655555554
No 76
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.74 E-value=1.3e-17 Score=159.51 Aligned_cols=200 Identities=17% Similarity=0.089 Sum_probs=118.8
Q ss_pred CcEEEcCCCCCc-ccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765 35 KRTVECIDRNFY-TIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (269)
Q Consensus 35 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 111 (269)
-+.++.++|.+. .+|..+. ++++.|++++|+++...+..|. ++++|+.|++++|++++..|..|..+++|+.|++
T Consensus 444 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS--NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh--cCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence 456777777776 3444433 5677777777777755455555 6677777777777777666666666777777777
Q ss_pred CCCCCC-CcCCccC-ccccceeecCCCcccccCcc---------------------------------------------
Q psy14765 112 SDNLLS-TVPSLIY-IPYLKSINLAHNPINQISSY--------------------------------------------- 144 (269)
Q Consensus 112 ~~N~l~-~l~~~~~-l~~L~~L~L~~N~i~~~~~~--------------------------------------------- 144 (269)
++|.++ .+|.... +++|+.|++++|++++..|.
T Consensus 522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (768)
T 3rgz_A 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601 (768)
T ss_dssp CSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCG
T ss_pred CCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccc
Confidence 777766 4454444 66666666666666532221
Q ss_pred -------------------------ccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeecccc-CCCcccccee
Q psy14765 145 -------------------------SFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQS-ATPCRIMWSI 198 (269)
Q Consensus 145 -------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~-~~~~~~~~~~ 198 (269)
.++.+++|+.|+|++|++++..+..+..++. ++.+.+++|.+. .+|..+..+.
T Consensus 602 ~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~-L~~L~Ls~N~l~g~ip~~l~~L~ 680 (768)
T 3rgz_A 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY-LFILNLGHNDISGSIPDEVGDLR 680 (768)
T ss_dssp GGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCT
T ss_pred hhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcccc-CCEEeCcCCccCCCCChHHhCCC
Confidence 2233455666677777666665666666655 566666666665 3333333322
Q ss_pred cccccccccccCcccc-ccccceeecCCCeeeeeeccceeeee
Q psy14765 199 NRKIYDHVNWNSNKIN-IKEETVLSKDNSYLSVFSGGVDLAAA 240 (269)
Q Consensus 199 ~~~~l~~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~n~~~~~ 240 (269)
.++.+++++|++. .+|..+..........++.+++.|.-
T Consensus 681 ---~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 681 ---GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720 (768)
T ss_dssp ---TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred ---CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccC
Confidence 2666666666663 45555555555555555555555543
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=4.6e-18 Score=145.82 Aligned_cols=172 Identities=13% Similarity=0.049 Sum_probs=139.8
Q ss_pred CCcEEEcCCCCCcccCCCC-------CCCceEEEeecCCccccccccccccCCCcccEEEcccccccccc--hhhh--cC
Q psy14765 34 GKRTVECIDRNFYTIPEGI-------DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD--DRAF--RG 102 (269)
Q Consensus 34 ~~~~v~c~~~~l~~ip~~~-------~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~--~~~~--~~ 102 (269)
.-+.++.++|.++.+|..+ .++++.|++++|+++.+++..|. ++++|+.|++++|++.+.. +..+ ..
T Consensus 122 ~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR--VFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC--CCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc--cCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 3689999999999886533 27999999999999999988888 8999999999999987641 2233 88
Q ss_pred CCCCCEEEcCCCCCCCcC---CccC--ccccceeecCCCcccccCc-cccCCCCCCCEEEccCCcceeeCcccccccccC
Q psy14765 103 VTNMDELDLSDNLLSTVP---SLIY--IPYLKSINLAHNPINQISS-YSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLP 176 (269)
Q Consensus 103 l~~L~~L~L~~N~l~~l~---~~~~--l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~ 176 (269)
+++|++|++++|.++.++ ...+ +++|+.|++++|++++..+ ..+..+++|++|+|++|+++.+|...+ ..
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~ 275 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP----AK 275 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC----SE
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc----CC
Confidence 999999999999999554 3443 6899999999999999764 556778999999999999999887665 23
Q ss_pred CCeeEEeeccccCCCccccceecccccccccccCccccc
Q psy14765 177 GSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINI 215 (269)
Q Consensus 177 l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~ 215 (269)
++.+++++|.+...|. +. ....++.+++.+|.+..
T Consensus 276 L~~L~Ls~N~l~~~p~-~~---~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 276 LSVLDLSYNRLDRNPS-PD---ELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEECCSSCCCSCCC-TT---TSCEEEEEECTTCTTTC
T ss_pred ceEEECCCCCCCCChh-Hh---hCCCCCEEeccCCCCCC
Confidence 6889999999988754 33 23348888888887653
No 78
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=1.3e-17 Score=143.24 Aligned_cols=149 Identities=17% Similarity=0.217 Sum_probs=98.4
Q ss_pred CcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhc-CCCCCCEEEcCC
Q psy14765 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR-GVTNMDELDLSD 113 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~~ 113 (269)
-+.+++++|.++.++....++++.|++++|.++.+++..|. .+++|+.|++++|+|+.+.+..+. .+++|++|++++
T Consensus 101 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp CCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTG--GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred cCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhh--ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 34566666666666555556677777777777777666665 667777777777777776655553 566777777777
Q ss_pred CCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeecccc
Q psy14765 114 NLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQS 188 (269)
Q Consensus 114 N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~ 188 (269)
|.++.++...++++|+.|++++|+++++++. +..+++|+.|++++|++++++.. +..++. ++.+.+++|.+.
T Consensus 179 N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~-~~~l~~-L~~L~l~~N~~~ 250 (317)
T 3o53_A 179 NFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQN-LEHFDLRGNGFH 250 (317)
T ss_dssp SCCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTT-CCEEECTTCCCB
T ss_pred CcCcccccccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhH-hhcCCC-CCEEEccCCCcc
Confidence 7777665544467777777777777777554 66667777777777777776543 444443 566777776655
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=2.2e-17 Score=143.88 Aligned_cols=179 Identities=15% Similarity=0.208 Sum_probs=139.8
Q ss_pred CCcEEEcCCCCCcccCCCCC---CCceEEEeecCCcc-ccccccccccCCCcccE-EEcccccccccchhhhcCCCCCCE
Q psy14765 34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNIN-VLQKEIFLQMGITNIQK-LYLRKCKLEFVDDRAFRGVTNMDE 108 (269)
Q Consensus 34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~-~i~~~~f~~~~l~~L~~-L~L~~N~i~~~~~~~~~~l~~L~~ 108 (269)
..++++.++|+|+.+|++.+ ++|+.|++++|++. .+++.+|. +++++.. +.+.+|+|+.+++++|..+++|++
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~--~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS--NLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC--SCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh--cchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 35789999999999998765 79999999999985 68889998 8888765 667789999999999999999999
Q ss_pred EEcCCCCCCCcCCccC--ccccceeecCC-CcccccCccccCCCC-CCCEEEccCCcceeeCcccccccccCCCeeEEe-
Q psy14765 109 LDLSDNLLSTVPSLIY--IPYLKSINLAH-NPINQISSYSFQSTP-GIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLD- 183 (269)
Q Consensus 109 L~L~~N~l~~l~~~~~--l~~L~~L~L~~-N~i~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~- 183 (269)
|++++|+++.++...+ ..++..+++.+ |.+..+++..|..+. .++.|+|++|+|+++++..|....+ ..+.+.
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L--~~l~l~~ 186 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL--DELNLSD 186 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEE--EEEECTT
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccch--hHHhhcc
Confidence 9999999999887766 56677777754 678888777777764 5778888888888888877766543 666664
Q ss_pred eccccCCCccccceecccccccccccCcccccccc
Q psy14765 184 CRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEE 218 (269)
Q Consensus 184 ~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~ 218 (269)
+|.++.++.++... ...++.+++++|++...+.
T Consensus 187 ~n~l~~i~~~~f~~--l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 187 NNNLEELPNDVFHG--ASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp CTTCCCCCTTTTTT--EECCSEEECTTSCCCCCCS
T ss_pred CCcccCCCHHHhcc--CcccchhhcCCCCcCccCh
Confidence 67777777654322 2237777777777765444
No 80
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.73 E-value=1.7e-17 Score=149.06 Aligned_cols=141 Identities=24% Similarity=0.385 Sum_probs=123.8
Q ss_pred CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--cccccee
Q psy14765 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI 131 (269)
Q Consensus 54 ~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L 131 (269)
++++.|++++|.++.+.+..|. .+++|+.|++++|+++++++..|.++++|+.|++++|.++.+++..+ +++|+.|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFS--HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred cCceEEEecCccccccchhhcc--cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEE
Confidence 4789999999999988888887 88999999999999999988889999999999999999998876666 8999999
Q ss_pred ecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCccccce
Q psy14765 132 NLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWS 197 (269)
Q Consensus 132 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~ 197 (269)
++++|+++++.+..|..+++|++|++++|++++++++.|..++. ++.+.+++|.+.+..+.+.|+
T Consensus 353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS-LQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSSCBCCCTTTTHHH
T ss_pred ECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCc-ccEEEccCCCcccCCCcchHH
Confidence 99999999998888999999999999999999999888888776 789999999987766666665
No 81
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.72 E-value=3.5e-17 Score=153.37 Aligned_cols=198 Identities=16% Similarity=0.161 Sum_probs=116.7
Q ss_pred CcEEEcCCCCCcccCCCCC----CCceEEEeecCCcccccccccc-----ccCCCcccEEEcccccccccchhhhcCCCC
Q psy14765 35 KRTVECIDRNFYTIPEGID----LDTQVLDLSSNNINVLQKEIFL-----QMGITNIQKLYLRKCKLEFVDDRAFRGVTN 105 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~----~~l~~L~l~~n~l~~i~~~~f~-----~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 105 (269)
-+.++.++|.++.+|..+. ++++.|++++|.++...+..|. .+.+++|+.|++++|+|+.+++..+..+++
T Consensus 379 L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~ 458 (636)
T 4eco_A 379 VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458 (636)
T ss_dssp CCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCC
T ss_pred CcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCC
Confidence 4556666666666665443 1566666666666543333221 002456777777777777776666666777
Q ss_pred CCEEEcCCCCCCCcCCccC-cc--------ccceeecCCCcccccCcccc-CCCCCCCEEEccCCcceeeCccccccccc
Q psy14765 106 MDELDLSDNLLSTVPSLIY-IP--------YLKSINLAHNPINQISSYSF-QSTPGIRYIDMSNCQIHTIYSEAFYVMVL 175 (269)
Q Consensus 106 L~~L~L~~N~l~~l~~~~~-l~--------~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 175 (269)
|+.|++++|.++.+|...+ .. +|+.|++++|+++.++...+ ..+++|+.|+|++|+++++|.. +..++.
T Consensus 459 L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~ 537 (636)
T 4eco_A 459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ-PLNSST 537 (636)
T ss_dssp CSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCG-GGGCSS
T ss_pred CCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChh-hhcCCC
Confidence 7777777777777776666 22 77777777777776654322 2677777777777777775543 334443
Q ss_pred CCCeeEEee------cc-ccCCCccccceecccccccccccCccccccccceeecCCCeeeeeeccceeee
Q psy14765 176 PGSNLTLDC------RV-QSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSGGVDLAA 239 (269)
Q Consensus 176 ~l~~l~l~~------n~-~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~ 239 (269)
++.+.++. |. .+..|..+. ....++.+++++|.++..+..+. .....+.+..+.+.+.
T Consensus 538 -L~~L~Ls~N~~ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 538 -LKGFGIRNQRDAQGNRTLREWPEGIT---LCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp -CCEEECCSCBCTTCCBCCCCCCTTGG---GCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred -CCEEECCCCcccccCcccccChHHHh---cCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCccc
Confidence 56777743 22 233333332 23347777777777765555544 3444455555544443
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=1.3e-17 Score=151.65 Aligned_cols=176 Identities=13% Similarity=0.114 Sum_probs=92.8
Q ss_pred CcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchh-------------
Q psy14765 35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR------------- 98 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~------------- 98 (269)
-+.+++++|.++.+++... ++|+.|++++|.++.+++ |. ++++|++|++++|.|+++++.
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~--~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE--SLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CT--TCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cc--cCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence 5678888888887764322 678888888888886665 55 677888888877777766532
Q ss_pred ---hhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccC-CCCCCCEEEccCCcceeeCcccccc
Q psy14765 99 ---AFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQ-STPGIRYIDMSNCQIHTIYSEAFYV 172 (269)
Q Consensus 99 ---~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~ 172 (269)
....+++|+.|++++|.++.+++..+ +++|+.|++++|.++++.+..+. .+++|+.|+|++|.++++++.. .
T Consensus 112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~--~ 189 (487)
T 3oja_A 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV--V 189 (487)
T ss_dssp CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC--C
T ss_pred CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc--c
Confidence 00112334444444444444433222 44555555555555544443333 3445555555555555443222 1
Q ss_pred cccCCCeeEEeeccccCCCccccceecccccccccccCccccccccce
Q psy14765 173 MVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETV 220 (269)
Q Consensus 173 l~~~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~ 220 (269)
++. +..+++++|.+...++.+.. ...+..+++++|.+...+..+
T Consensus 190 l~~-L~~L~Ls~N~l~~~~~~~~~---l~~L~~L~Ls~N~l~~lp~~l 233 (487)
T 3oja_A 190 FAK-LKTLDLSSNKLAFMGPEFQS---AAGVTWISLRNNKLVLIEKAL 233 (487)
T ss_dssp CTT-CCEEECCSSCCCEECGGGGG---GTTCSEEECTTSCCCEECTTC
T ss_pred CCC-CCEEECCCCCCCCCCHhHcC---CCCccEEEecCCcCcccchhh
Confidence 222 45555555555544443221 222455555555554333333
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=4.4e-17 Score=139.54 Aligned_cols=165 Identities=15% Similarity=0.206 Sum_probs=138.1
Q ss_pred CCcEEEcCCCCCcccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765 34 GKRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (269)
Q Consensus 34 ~~~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 111 (269)
.-+.++++++.++.++. +. ++|+.|++++|.++.++ .|. .+++|+.|++++|+++.+++ +..+++|++|++
T Consensus 64 ~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l 136 (308)
T 1h6u_A 64 NLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--AIA--GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYL 136 (308)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG--GGT--TCTTCCEEECTTSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch--hhc--CCCCCCEEECCCCCCCCchh--hcCCCCCCEEEC
Confidence 36899999999999887 33 79999999999999886 355 88999999999999999864 889999999999
Q ss_pred CCCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCC
Q psy14765 112 SDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSAT 190 (269)
Q Consensus 112 ~~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~ 190 (269)
++|.++.++. .. +++|+.|++++|+++++++ +..+++|+.|++++|+++++++ +..++. ++.+.+++|.+...
T Consensus 137 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~-L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 137 DLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPN-LIEVHLKNNQISDV 210 (308)
T ss_dssp CSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTT-CCEEECTTSCCCBC
T ss_pred CCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCC-CCEEEccCCccCcc
Confidence 9999998876 33 8999999999999998865 8899999999999999998875 666665 78999999988776
Q ss_pred CccccceecccccccccccCccccc
Q psy14765 191 PCRIMWSINRKIYDHVNWNSNKINI 215 (269)
Q Consensus 191 ~~~~~~~~~~~~l~~l~~~~n~~~~ 215 (269)
++ +.....++.+++.+|.+..
T Consensus 211 ~~----l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 211 SP----LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GG----GTTCTTCCEEEEEEEEEEC
T ss_pred cc----ccCCCCCCEEEccCCeeec
Confidence 63 3334457788888887754
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=4.5e-17 Score=138.42 Aligned_cols=165 Identities=17% Similarity=0.197 Sum_probs=129.6
Q ss_pred CcEEEcCCCCCcccCCCC-CCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCC
Q psy14765 35 KRTVECIDRNFYTIPEGI-DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~-~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 113 (269)
-+.++++++.+..+|..- .++++.|++++|.++.+++ +. .+++|+.|++++|+++.++. +..+++|++|++++
T Consensus 48 L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LA--NLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEH 121 (291)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTT
T ss_pred ccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cc--cCCCCCEEECCCCcCCCChh--hccCCCCCEEECCC
Confidence 578899999988886522 2789999999999998877 55 78899999999999988754 88889999999999
Q ss_pred CCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCc
Q psy14765 114 NLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPC 192 (269)
Q Consensus 114 N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~ 192 (269)
|+++.++. .. +++|+.|++++|+++++ ..++.+++|+.|++++|+++++++ +..++. ++.+.+++|.+...+.
T Consensus 122 n~i~~~~~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~-L~~L~L~~N~i~~l~~ 195 (291)
T 1h6t_A 122 NGISDING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK-LQNLYLSKNHISDLRA 195 (291)
T ss_dssp SCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTT-CCEEECCSSCCCBCGG
T ss_pred CcCCCChh-hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCc-cCEEECCCCcCCCChh
Confidence 99988743 33 88899999999998887 357888889999999999888865 666665 7888888888777542
Q ss_pred cccceecccccccccccCccccc
Q psy14765 193 RIMWSINRKIYDHVNWNSNKINI 215 (269)
Q Consensus 193 ~~~~~~~~~~l~~l~~~~n~~~~ 215 (269)
+.....++.+++.+|.+..
T Consensus 196 ----l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 196 ----LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ----GTTCTTCSEEEEEEEEEEC
T ss_pred ----hccCCCCCEEECcCCcccC
Confidence 3334457777777777643
No 85
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=1.7e-17 Score=142.57 Aligned_cols=168 Identities=16% Similarity=0.149 Sum_probs=98.1
Q ss_pred CcEEEcCCCCCcccCC-CCCCCceEEEeecCCccc-------------------cccccccccCCCcccEEEcccccccc
Q psy14765 35 KRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINV-------------------LQKEIFLQMGITNIQKLYLRKCKLEF 94 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~-~~~~~l~~L~l~~n~l~~-------------------i~~~~f~~~~l~~L~~L~L~~N~i~~ 94 (269)
-+.++.++|.++.+++ .-.++|+.|++++|.++. ++.. .+++|+.|++++|+++.
T Consensus 60 L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~-----~~~~L~~L~l~~N~l~~ 134 (317)
T 3o53_A 60 LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS-----RGQGKKNIYLANNKITM 134 (317)
T ss_dssp CCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEEC-----CCSSCEEEECCSSCCCS
T ss_pred CCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCcc-----ccCCCCEEECCCCCCCC
Confidence 3556666666654433 111455555555555544 3333 23556677777777776
Q ss_pred cchhhhcCCCCCCEEEcCCCCCCCcCCccC---ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCccccc
Q psy14765 95 VDDRAFRGVTNMDELDLSDNLLSTVPSLIY---IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171 (269)
Q Consensus 95 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~---l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 171 (269)
+++..|..+++|++|++++|.++.++...+ +++|+.|++++|.+++++. ...+++|+.|++++|+++++++. +.
T Consensus 135 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~ 211 (317)
T 3o53_A 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQ 211 (317)
T ss_dssp GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GG
T ss_pred ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hc
Confidence 666666666777777777777765543332 5667777777777766633 22366677777777777776655 44
Q ss_pred ccccCCCeeEEeeccccCCCccccceecccccccccccCcccc
Q psy14765 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKIN 214 (269)
Q Consensus 172 ~l~~~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~ 214 (269)
.++. ++.+.+++|.+...+..+.. ...++.+++.+|.+.
T Consensus 212 ~l~~-L~~L~L~~N~l~~l~~~~~~---l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 212 SAAG-VTWISLRNNKLVLIEKALRF---SQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGTT-CSEEECTTSCCCEECTTCCC---CTTCCEEECTTCCCB
T ss_pred ccCc-ccEEECcCCcccchhhHhhc---CCCCCEEEccCCCcc
Confidence 4444 56677777766655543322 223666666666654
No 86
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.71 E-value=2.3e-17 Score=154.60 Aligned_cols=152 Identities=20% Similarity=0.262 Sum_probs=98.7
Q ss_pred CcEEEcCCCCCcccCC--CCC--CCceEEEeecCCcc-ccccccccccCCCcccEEEcccccccccchhhhcCCCC-CCE
Q psy14765 35 KRTVECIDRNFYTIPE--GID--LDTQVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN-MDE 108 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~--~~~--~~l~~L~l~~n~l~-~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~-L~~ 108 (269)
-+.+++++|.++.+|. .+. ++|+.|++++|.++ .+| .|. .+++|+.|++++|+++.++. .|..+++ |++
T Consensus 307 L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~--~l~~L~~L~L~~N~l~~lp~-~l~~l~~~L~~ 381 (636)
T 4eco_A 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFG--SEIKLASLNLAYNQITEIPA-NFCGFTEQVEN 381 (636)
T ss_dssp CCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCE--EEEEESEEECCSSEEEECCT-TSEEECTTCCE
T ss_pred CCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhC--CCCCCCEEECCCCccccccH-hhhhhcccCcE
Confidence 4667777777777776 333 67777777777777 666 455 66777777777777776543 4677777 777
Q ss_pred EEcCCCCCCCcCCccC-c--cccceeecCCCcccccCccccC-------CCCCCCEEEccCCcceeeCcccccccccCCC
Q psy14765 109 LDLSDNLLSTVPSLIY-I--PYLKSINLAHNPINQISSYSFQ-------STPGIRYIDMSNCQIHTIYSEAFYVMVLPGS 178 (269)
Q Consensus 109 L~L~~N~l~~l~~~~~-l--~~L~~L~L~~N~i~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~ 178 (269)
|++++|.++.+|.... . ++|+.|++++|.+++..|..+. .+++|+.|++++|++++++...+..++. ++
T Consensus 382 L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~-L~ 460 (636)
T 4eco_A 382 LSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP-LS 460 (636)
T ss_dssp EECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCC-CS
T ss_pred EEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCC-CC
Confidence 7777777777776444 2 3677777777777666555555 5556666666666666666555544443 45
Q ss_pred eeEEeeccccCCCc
Q psy14765 179 NLTLDCRVQSATPC 192 (269)
Q Consensus 179 ~l~l~~n~~~~~~~ 192 (269)
.+.++.|.+...+.
T Consensus 461 ~L~Ls~N~l~~i~~ 474 (636)
T 4eco_A 461 SINLMGNMLTEIPK 474 (636)
T ss_dssp EEECCSSCCSBCCS
T ss_pred EEECCCCCCCCcCH
Confidence 55555555554443
No 87
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.71 E-value=2.3e-17 Score=151.54 Aligned_cols=153 Identities=18% Similarity=0.256 Sum_probs=132.2
Q ss_pred CCcEEEcCCCCCcccCCCC-C--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765 34 GKRTVECIDRNFYTIPEGI-D--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (269)
Q Consensus 34 ~~~~v~c~~~~l~~ip~~~-~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 110 (269)
.-++++.+++.++.+++.. . +++++|++++|+++.+++..|. ++++|++|++++|+++++++..|.++++|++|+
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY--SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcc--ccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 4689999999999986543 3 7999999999999999999998 899999999999999999999999999999999
Q ss_pred cCCCCCCCc--CCccC-ccccceeecCCCc-ccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeecc
Q psy14765 111 LSDNLLSTV--PSLIY-IPYLKSINLAHNP-INQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRV 186 (269)
Q Consensus 111 L~~N~l~~l--~~~~~-l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~ 186 (269)
+++|.++.+ +.... +++|+.|++++|. +..+++..|+++++|+.|++++|.+++..+..+..+.. ++.+.++.|.
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n~ 183 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD-IHHLTLHLSE 183 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE-EEEEEEECSB
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc-CceEecccCc
Confidence 999999965 44444 9999999999998 78887778999999999999999999988877776654 5666666665
Q ss_pred ccC
Q psy14765 187 QSA 189 (269)
Q Consensus 187 ~~~ 189 (269)
...
T Consensus 184 ~~~ 186 (549)
T 2z81_A 184 SAF 186 (549)
T ss_dssp STT
T ss_pred ccc
Confidence 443
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=3.9e-17 Score=148.46 Aligned_cols=148 Identities=18% Similarity=0.223 Sum_probs=90.3
Q ss_pred cEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhc-CCCCCCEEEcCCC
Q psy14765 36 RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR-GVTNMDELDLSDN 114 (269)
Q Consensus 36 ~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~~N 114 (269)
+.+++++|.+..+|...+++++.|++++|.++.+++..|. ++++|+.|++++|.|+++++..|. .+++|+.|+|++|
T Consensus 102 ~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 102 ETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp CEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGG--GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhc--CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 4455555555555554455666666666666666665555 566666666666666666555554 5666666666666
Q ss_pred CCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeecccc
Q psy14765 115 LLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQS 188 (269)
Q Consensus 115 ~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~ 188 (269)
.++.++...++++|+.|+|++|.++++++. +..+++|+.|+|++|.++++|.. +..++. +..+.+++|.+.
T Consensus 180 ~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~-L~~L~l~~N~l~ 250 (487)
T 3oja_A 180 FIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQN-LEHFDLRGNGFH 250 (487)
T ss_dssp CCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTT-CCEEECTTCCBC
T ss_pred ccccccccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh-hccCCC-CCEEEcCCCCCc
Confidence 666665444466666666666666666554 55666666666666666666543 333333 466666666554
No 89
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=1.2e-16 Score=147.31 Aligned_cols=156 Identities=12% Similarity=0.208 Sum_probs=134.5
Q ss_pred CCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCC
Q psy14765 34 GKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113 (269)
Q Consensus 34 ~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 113 (269)
.-+.+++++|.++.+| ..+++|+.|++++|.|+.+|. |. + +|+.|++++|+|+++++ .+++|+.|++++
T Consensus 81 ~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~--l~--~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 81 QITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE--LP--A--SLKHLDVDNNQLTMLPE----LPALLEYINADN 149 (571)
T ss_dssp TCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC--CC--T--TCCEEECCSSCCSCCCC----CCTTCCEEECCS
T ss_pred CCCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch--hh--c--CCCEEECCCCcCCCCCC----cCccccEEeCCC
Confidence 3689999999999999 777999999999999999988 53 3 89999999999999876 678999999999
Q ss_pred CCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCC-------CeeEEeecc
Q psy14765 114 NLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPG-------SNLTLDCRV 186 (269)
Q Consensus 114 N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l-------~~l~l~~n~ 186 (269)
|.|+.+|. .+++|+.|+|++|++++++. |. ++|+.|+|++|+|+.+|. +.. .+ ..+.+++|.
T Consensus 150 N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~--~~~---~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 150 NQLTMLPE--LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA--VPV---RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC--CC-----------CCEEEECCSSC
T ss_pred CccCcCCC--cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh--HHH---hhhcccccceEEecCCCc
Confidence 99999887 47899999999999999865 65 899999999999999887 433 35 889999999
Q ss_pred ccCCCccccceecccccccccccCcccc
Q psy14765 187 QSATPCRIMWSINRKIYDHVNWNSNKIN 214 (269)
Q Consensus 187 ~~~~~~~~~~~~~~~~l~~l~~~~n~~~ 214 (269)
+..+|..+..+ ..+..+++.+|.+.
T Consensus 219 l~~lp~~l~~l---~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 219 ITHIPENILSL---DPTCTIILEDNPLS 243 (571)
T ss_dssp CCCCCGGGGGS---CTTEEEECCSSSCC
T ss_pred ceecCHHHhcC---CCCCEEEeeCCcCC
Confidence 99988766553 34888999999884
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.71 E-value=1.9e-17 Score=141.82 Aligned_cols=173 Identities=13% Similarity=0.100 Sum_probs=91.0
Q ss_pred CcEEEcCCCCCcc-cCCCC----CCCceEEEeecCCccccc----cccccccCCCcccEEEcccccccccchhhhcCCCC
Q psy14765 35 KRTVECIDRNFYT-IPEGI----DLDTQVLDLSSNNINVLQ----KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN 105 (269)
Q Consensus 35 ~~~v~c~~~~l~~-ip~~~----~~~l~~L~l~~n~l~~i~----~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 105 (269)
-+.++.+++.+.. +|..+ .++++.|++++|.++... ...+. .+++|++|++++|+|+.+++..|..+++
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW--LKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT--BCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh--hccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 3455556666553 33322 245666666666665321 12222 4566666666666666666666666666
Q ss_pred CCEEEcCCCCCCC---cCCcc--C-ccccceeecCCCcccccCcc---ccCCCCCCCEEEccCCcceeeCcccccccc--
Q psy14765 106 MDELDLSDNLLST---VPSLI--Y-IPYLKSINLAHNPINQISSY---SFQSTPGIRYIDMSNCQIHTIYSEAFYVMV-- 174 (269)
Q Consensus 106 L~~L~L~~N~l~~---l~~~~--~-l~~L~~L~L~~N~i~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-- 174 (269)
|++|++++|++.. ++... . +++|++|++++|+++.++.. .++.+++|++|+|++|+++++.+..+..+.
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 6666666666542 32222 1 55666666666666544321 234556666666666666665333333331
Q ss_pred cCCCeeEEeeccccCCCccccceecccccccccccCcccc
Q psy14765 175 LPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKIN 214 (269)
Q Consensus 175 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~ 214 (269)
..++.+.+++|.+...|..+. ..++.+++++|++.
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~~~-----~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKGLP-----AKLRVLDLSSNRLN 285 (310)
T ss_dssp TTCCCEECCSSCCCSCCSCCC-----SCCSCEECCSCCCC
T ss_pred CcCCEEECCCCCCCchhhhhc-----CCCCEEECCCCcCC
Confidence 225666666666665544332 22555666666554
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=7.5e-17 Score=129.13 Aligned_cols=143 Identities=16% Similarity=0.228 Sum_probs=74.5
Q ss_pred CcEEEcCCCCCcccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765 35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 112 (269)
-+.++++++.++.+| ++. ++++.|++++|.++.++ .+. .+++|++|++++|+++...+..|..+++|++|+++
T Consensus 46 L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 46 LTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp CCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGT--TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred ccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhh--cCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 345555555555555 222 55566666666555443 233 45556666666666655444455555566666666
Q ss_pred CCCCCC-cCCccC-ccccceeecCCCc-ccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccc
Q psy14765 113 DNLLST-VPSLIY-IPYLKSINLAHNP-INQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQ 187 (269)
Q Consensus 113 ~N~l~~-l~~~~~-l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~ 187 (269)
+|.++. .+.... +++|+.|++++|+ ++.++ .+..+++|+.|++++|.++.++ .+..++. ++.+.+++|.+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~-L~~L~l~~N~i 193 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPK-LNQLYAFSQTI 193 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSS-CCEEEECBC--
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCC-CCEEEeeCccc
Confidence 665553 222222 5556666666665 55543 2555555666666666555544 3344433 45555555543
No 92
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.70 E-value=3.2e-16 Score=144.68 Aligned_cols=170 Identities=14% Similarity=0.128 Sum_probs=87.1
Q ss_pred cEEEcCCCCCcccCC-CCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccch--hhhcCCCCCCEEEcC
Q psy14765 36 RTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD--RAFRGVTNMDELDLS 112 (269)
Q Consensus 36 ~~v~c~~~~l~~ip~-~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~--~~~~~l~~L~~L~L~ 112 (269)
+.++.+++.+..++. .-.++++.|++++|.++.+.+..|. ++++|+.|++++|+++++++ ..|.++++|+.|+++
T Consensus 334 ~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS--TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC--SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred eEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhc--ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence 344555555444332 2235566666666666654444444 55666666666666665442 345556666666666
Q ss_pred CCCCCC-cCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccC
Q psy14765 113 DNLLST-VPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSA 189 (269)
Q Consensus 113 ~N~l~~-l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~ 189 (269)
+|.++. +|...+ +++|+.|++++|++++..+..+. ++|+.|++++|+++.+|+..+ .++. ++.+++++|.+..
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~-~l~~-L~~L~L~~N~l~~ 487 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT-HLQA-LQELNVASNQLKS 487 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTT-SSCC-CSEEECCSSCCCC
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhc-CCCC-CCEEECCCCCCCC
Confidence 666654 555544 55555555555555543333222 355555555555555555444 3333 4555555555555
Q ss_pred CCccccceecccccccccccCccc
Q psy14765 190 TPCRIMWSINRKIYDHVNWNSNKI 213 (269)
Q Consensus 190 ~~~~~~~~~~~~~l~~l~~~~n~~ 213 (269)
.+... +.....++.+++.+|.+
T Consensus 488 l~~~~--~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 488 VPDGV--FDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CCTTS--TTTCTTCCCEECCSCCB
T ss_pred CCHHH--HhcCCCCCEEEecCCCc
Confidence 44431 11222244455555544
No 93
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.70 E-value=2.3e-16 Score=144.08 Aligned_cols=172 Identities=15% Similarity=0.117 Sum_probs=115.9
Q ss_pred CcEEEcCCCCCcccCC-CCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccc--hhhhcCCCCCCEEEc
Q psy14765 35 KRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD--DRAFRGVTNMDELDL 111 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~-~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~L 111 (269)
-+.++++++++..++. .-.++++.|++++|.++...+..|. .+++|+.|++++|+|++++ +..|..+++|++|++
T Consensus 304 L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG--HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381 (520)
T ss_dssp CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC--CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred eeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhc--cCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence 3455555665555442 3346788888888888765555555 7788888888888887654 356777888888888
Q ss_pred CCCCCCC-cCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeecccc
Q psy14765 112 SDNLLST-VPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQS 188 (269)
Q Consensus 112 ~~N~l~~-l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~ 188 (269)
++|.++. +|...+ +++|+.|++++|++++..+..+. ++|+.|++++|+++.+|...+ .++. ++.+.+++|.+.
T Consensus 382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~-~l~~-L~~L~L~~N~l~ 457 (520)
T 2z7x_B 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVV-KLEA-LQELNVASNQLK 457 (520)
T ss_dssp CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGG-GCTT-CCEEECCSSCCC
T ss_pred CCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhh-cCCC-CCEEECCCCcCC
Confidence 8888876 776655 77788888888877665554443 577788888888877776555 4444 677777777777
Q ss_pred CCCccccceecccccccccccCcccc
Q psy14765 189 ATPCRIMWSINRKIYDHVNWNSNKIN 214 (269)
Q Consensus 189 ~~~~~~~~~~~~~~l~~l~~~~n~~~ 214 (269)
..+.. .+.....++.+++.+|.+.
T Consensus 458 ~l~~~--~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 458 SVPDG--IFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CCCTT--TTTTCTTCCEEECCSSCBC
T ss_pred ccCHH--HhccCCcccEEECcCCCCc
Confidence 66654 1222333666777777664
No 94
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=6.8e-17 Score=150.61 Aligned_cols=127 Identities=17% Similarity=0.244 Sum_probs=92.1
Q ss_pred CCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhc
Q psy14765 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101 (269)
Q Consensus 22 ~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~ 101 (269)
+||..|.|... +.+.++|++++++.+|..++++++.|++++|.|+.++. .+++|++|++++|+|+.++.
T Consensus 30 ~~~~~~~c~~~-~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l~~lp~---- 98 (622)
T 3g06_A 30 VVQKMRACLNN-GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSLPV---- 98 (622)
T ss_dssp HHHHHHHHHHH-CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC------CCTTCCEEEECSCCCSCCCC----
T ss_pred cCcccccccCC-CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC------cCCCCCEEEcCCCcCCcCCC----
Confidence 56777888743 36799999999999999999999999999999998887 24789999999999988865
Q ss_pred CCCCCCEEEcCCCCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceee
Q psy14765 102 GVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165 (269)
Q Consensus 102 ~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 165 (269)
.+++|++|++++|.++.+|. .+++|+.|++++|+++.++.. +++|++|++++|.++++
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l 156 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASL 156 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCC
T ss_pred CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCc
Confidence 56788888888888887765 244555555555555554321 24444444444444443
No 95
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=9.3e-17 Score=125.16 Aligned_cols=133 Identities=20% Similarity=0.256 Sum_probs=65.7
Q ss_pred CCCCCceEEEeecCCcc--ccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCC-cCCccC-cc
Q psy14765 51 GIDLDTQVLDLSSNNIN--VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST-VPSLIY-IP 126 (269)
Q Consensus 51 ~~~~~l~~L~l~~n~l~--~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~-l~ 126 (269)
..+++++.|++++|.++ .++.. |. .+++|+.|++++|.|+.+ ..|..+++|++|++++|.++. +|.... ++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~-~~--~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGL-TA--EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSC-CG--GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred CCcccCCEEECCCCCCChhhHHHH-HH--hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 33345555555555555 44333 33 455555555555555554 345555555555555555554 222222 55
Q ss_pred ccceeecCCCcccccCc-cccCCCCCCCEEEccCCcceeeCc---ccccccccCCCeeEEeeccccC
Q psy14765 127 YLKSINLAHNPINQISS-YSFQSTPGIRYIDMSNCQIHTIYS---EAFYVMVLPGSNLTLDCRVQSA 189 (269)
Q Consensus 127 ~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~~l~~l~l~~n~~~~ 189 (269)
+|+.|++++|.+++++. ..+..+++|+.|++++|.++++++ ..+..++. ++.+.+..|....
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~-L~~L~l~~n~~~~ 161 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ-LTYLDGYDREDQE 161 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSS-CCEETTEETTSCB
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCcc-CcEecCCCCChhh
Confidence 55555555555555432 345555555555555555555544 34444443 4555555544433
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=1.1e-16 Score=134.06 Aligned_cols=144 Identities=16% Similarity=0.254 Sum_probs=117.9
Q ss_pred CCcEEEcCCCCCcccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765 34 GKRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (269)
Q Consensus 34 ~~~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 111 (269)
.-+.+++++++++.+|. +. ++++.|++++|.++.+++ |. ++++|+.|++++|+++.+++ +.. ++|+.|++
T Consensus 42 ~L~~L~l~~n~i~~l~~-l~~l~~L~~L~L~~N~i~~~~~--l~--~l~~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L 113 (263)
T 1xeu_A 42 GVQNFNGDNSNIQSLAG-MQFFTNLKELHLSHNQISDLSP--LK--DLTKLEELSVNRNRLKNLNG--IPS-ACLSRLFL 113 (263)
T ss_dssp TCSEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GT--TCSSCCEEECCSSCCSCCTT--CCC-SSCCEEEC
T ss_pred cCcEEECcCCCcccchH-HhhCCCCCEEECCCCccCCChh--hc--cCCCCCEEECCCCccCCcCc--ccc-CcccEEEc
Confidence 35788999999988873 33 789999999999998887 65 78999999999999998865 333 88999999
Q ss_pred CCCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCC
Q psy14765 112 SDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSAT 190 (269)
Q Consensus 112 ~~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~ 190 (269)
++|+++.++. .. +++|+.|++++|++++++ .++.+++|+.|++++|+++++ ..+..++. ++.+.+++|.+...
T Consensus 114 ~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~-L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 114 DNNELRDTDS-LIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKK-VNWIDLTGQKCVNE 187 (263)
T ss_dssp CSSCCSBSGG-GTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCC-CCEEEEEEEEEECC
T ss_pred cCCccCCChh-hcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--HHhccCCC-CCEEeCCCCcccCC
Confidence 9999998764 33 889999999999999884 478889999999999999888 55666665 78889998887766
Q ss_pred C
Q psy14765 191 P 191 (269)
Q Consensus 191 ~ 191 (269)
+
T Consensus 188 ~ 188 (263)
T 1xeu_A 188 P 188 (263)
T ss_dssp C
T ss_pred c
Confidence 5
No 97
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=6.9e-17 Score=125.92 Aligned_cols=130 Identities=17% Similarity=0.192 Sum_probs=115.6
Q ss_pred CcEEEcCCCCCc--ccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765 35 KRTVECIDRNFY--TIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (269)
Q Consensus 35 ~~~v~c~~~~l~--~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 110 (269)
-+.++++++.++ .+|..+. ++|+.|++++|.++.+ ..|. .+++|+.|++++|+++...+..+..+++|+.|+
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLP--KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCC--CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhc--cCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 689999999998 8887654 7999999999999988 5566 899999999999999997777788899999999
Q ss_pred cCCCCCCCcC--CccC-ccccceeecCCCcccccCc---cccCCCCCCCEEEccCCcceeeCcc
Q psy14765 111 LSDNLLSTVP--SLIY-IPYLKSINLAHNPINQISS---YSFQSTPGIRYIDMSNCQIHTIYSE 168 (269)
Q Consensus 111 L~~N~l~~l~--~~~~-l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~~ 168 (269)
+++|.++.++ .... +++|+.|++++|+++++++ ..+..+++|+.|++++|.+.+++.+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 9999999886 3444 9999999999999999977 5789999999999999999988754
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=3.7e-17 Score=139.99 Aligned_cols=170 Identities=12% Similarity=0.050 Sum_probs=137.0
Q ss_pred CcEEEcCCCCCcccCC-------CCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccc---cchh-hhcCC
Q psy14765 35 KRTVECIDRNFYTIPE-------GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF---VDDR-AFRGV 103 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~-------~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~---~~~~-~~~~l 103 (269)
-++++.++|.+..... ...++++.|++++|.+..+++..|. ++++|++|++++|++.+ +++. .+..+
T Consensus 119 L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 196 (310)
T 4glp_A 119 LSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR--AFPALTSLDLSDNPGLGERGLMAALCPHKF 196 (310)
T ss_dssp CSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC--CCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred CCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc--cCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence 6789999999986322 2247999999999999999999998 89999999999999875 3322 24678
Q ss_pred CCCCEEEcCCCCCCCcCCc---cC--ccccceeecCCCcccccCccccCCC---CCCCEEEccCCcceeeCccccccccc
Q psy14765 104 TNMDELDLSDNLLSTVPSL---IY--IPYLKSINLAHNPINQISSYSFQST---PGIRYIDMSNCQIHTIYSEAFYVMVL 175 (269)
Q Consensus 104 ~~L~~L~L~~N~l~~l~~~---~~--l~~L~~L~L~~N~i~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~ 175 (269)
++|++|++++|+++.++.. .+ +++|++|+|++|+++++.|..+..+ ++|++|+|++|+++.+|...+ .
T Consensus 197 ~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~----~ 272 (310)
T 4glp_A 197 PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP----A 272 (310)
T ss_dssp CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC----S
T ss_pred CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc----C
Confidence 9999999999999877654 33 7999999999999999966666665 699999999999999987654 2
Q ss_pred CCCeeEEeeccccCCCccccceecccccccccccCcccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKIN 214 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~ 214 (269)
.++.++++.|.+...+. ...+ ..++.+++.+|.+.
T Consensus 273 ~L~~L~Ls~N~l~~~~~-~~~l---~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 273 KLRVLDLSSNRLNRAPQ-PDEL---PEVDNLTLDGNPFL 307 (310)
T ss_dssp CCSCEECCSCCCCSCCC-TTSC---CCCSCEECSSTTTS
T ss_pred CCCEEECCCCcCCCCch-hhhC---CCccEEECcCCCCC
Confidence 47999999999987643 2333 33788888888765
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=4.6e-16 Score=130.29 Aligned_cols=165 Identities=15% Similarity=0.138 Sum_probs=136.2
Q ss_pred cEEEcCCCCCcccCCCC-CCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCC
Q psy14765 36 RTVECIDRNFYTIPEGI-DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114 (269)
Q Consensus 36 ~~v~c~~~~l~~ip~~~-~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 114 (269)
..++++++.+++++... .++++.|++++|.++.++ .+. .+++|+.|++++|+|+.+++ +..+++|+.|++++|
T Consensus 22 ~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~--~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 22 VKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQ--FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGG--GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred HHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHh--hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC
Confidence 34567788888877311 189999999999999988 355 78999999999999999987 899999999999999
Q ss_pred CCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCccc
Q psy14765 115 LLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRI 194 (269)
Q Consensus 115 ~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~ 194 (269)
+++.++...+ ++|+.|++++|.+++++ .++.+++|+.|++++|++++++ .+..++. ++.+.+++|.+... .
T Consensus 96 ~l~~l~~~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~-L~~L~L~~N~i~~~-~-- 166 (263)
T 1xeu_A 96 RLKNLNGIPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSK-LEVLDLHGNEITNT-G-- 166 (263)
T ss_dssp CCSCCTTCCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTT-CCEEECTTSCCCBC-T--
T ss_pred ccCCcCcccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCC-CCEEECCCCcCcch-H--
Confidence 9999887665 89999999999999984 4889999999999999999985 5666665 79999999998877 2
Q ss_pred cceecccccccccccCcccccc
Q psy14765 195 MWSINRKIYDHVNWNSNKINIK 216 (269)
Q Consensus 195 ~~~~~~~~l~~l~~~~n~~~~~ 216 (269)
++.....++.+++.+|.+...
T Consensus 167 -~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 167 -GLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -TSTTCCCCCEEEEEEEEEECC
T ss_pred -HhccCCCCCEEeCCCCcccCC
Confidence 333344578888888877543
No 100
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=3.3e-16 Score=150.78 Aligned_cols=196 Identities=16% Similarity=0.169 Sum_probs=147.1
Q ss_pred CcEEEcCCCCCcccCCCCC----CCceEEEeecCCccccccccc---cccCCCcccEEEcccccccccchhhhcCCCCCC
Q psy14765 35 KRTVECIDRNFYTIPEGID----LDTQVLDLSSNNINVLQKEIF---LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~----~~l~~L~l~~n~l~~i~~~~f---~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 107 (269)
-+.+++++|.++.+|..+. ++|+.|++++|.+....+... ..+.+++|+.|++++|+|+.+++..+..+++|+
T Consensus 621 L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~ 700 (876)
T 4ecn_A 621 VEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS 700 (876)
T ss_dssp CCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCS
T ss_pred CCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCC
Confidence 6789999999999997654 249999999999975443322 111356899999999999999888888899999
Q ss_pred EEEcCCCCCCCcCCccC-cc--------ccceeecCCCcccccCccccC--CCCCCCEEEccCCcceeeCcccccccccC
Q psy14765 108 ELDLSDNLLSTVPSLIY-IP--------YLKSINLAHNPINQISSYSFQ--STPGIRYIDMSNCQIHTIYSEAFYVMVLP 176 (269)
Q Consensus 108 ~L~L~~N~l~~l~~~~~-l~--------~L~~L~L~~N~i~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~~ 176 (269)
.|+|++|.++.+|...+ .. +|+.|+|++|+++.++.. +. .+++|+.|+|++|+++++|.. +..++.
T Consensus 701 ~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~-l~~~~l~~L~~L~Ls~N~L~~lp~~-l~~L~~- 777 (876)
T 4ecn_A 701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD-FRATTLPYLSNMDVSYNCFSSFPTQ-PLNSSQ- 777 (876)
T ss_dssp EEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGG-GSTTTCTTCCEEECCSSCCSSCCCG-GGGCTT-
T ss_pred EEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHH-hhhccCCCcCEEEeCCCCCCccchh-hhcCCC-
Confidence 99999999999998877 33 899999999999988554 54 889999999999999997654 456655
Q ss_pred CCeeEEee------cc-ccCCCccccceecccccccccccCccccccccceeecCCCeeeeeeccceee
Q psy14765 177 GSNLTLDC------RV-QSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSGGVDLA 238 (269)
Q Consensus 177 l~~l~l~~------n~-~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~ 238 (269)
++.+.++. |. .+..|..+ .....++.+++++|.++..+..+. .....+.+..+.+..
T Consensus 778 L~~L~Ls~N~~ls~N~l~~~ip~~l---~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 778 LKAFGIRHQRDAEGNRILRQWPTGI---TTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp CCEEECCCCBCTTCCBCCCCCCTTG---GGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTCE
T ss_pred CCEEECCCCCCcccccccccChHHH---hcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCCc
Confidence 78888865 33 33444333 334458888999999877766654 344555555554443
No 101
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.67 E-value=2.5e-16 Score=123.23 Aligned_cols=106 Identities=22% Similarity=0.347 Sum_probs=94.3
Q ss_pred ceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeec
Q psy14765 56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL 133 (269)
Q Consensus 56 l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L 133 (269)
.+.+++++|.++.+|...+ ++|+.|++++|+|+++++..|.++++|++|+|++|+|+.++...| +++|+.|+|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~-----~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP-----TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCccCccCC-----CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 4679999999999987753 678999999999999999899999999999999999999998887 899999999
Q ss_pred CCCcccccCccccCCCCCCCEEEccCCcceeeC
Q psy14765 134 AHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY 166 (269)
Q Consensus 134 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 166 (269)
++|+|+++++..|+.+++|+.|+|++|.++...
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999999998888999999999999999887654
No 102
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.67 E-value=9.7e-16 Score=147.95 Aligned_cols=106 Identities=24% Similarity=0.396 Sum_probs=89.5
Q ss_pred CcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765 35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 111 (269)
-+.++.+++.+..+++..+ ++++.|++++|.++.+++..|. ++++|++|++++|+++.+.+..|.++++|+.|++
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY--GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT--TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc--CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 5788888888888766544 6888999999999988888887 8889999999999999888888888999999999
Q ss_pred CCCCCCCcCCccC--ccccceeecCCCcccccC
Q psy14765 112 SDNLLSTVPSLIY--IPYLKSINLAHNPINQIS 142 (269)
Q Consensus 112 ~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~ 142 (269)
++|.++.++...| +++|+.|++++|.+++++
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred CCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence 9999988887776 888888888888877653
No 103
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.66 E-value=4.2e-16 Score=122.48 Aligned_cols=106 Identities=17% Similarity=0.321 Sum_probs=95.6
Q ss_pred eEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecC
Q psy14765 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLA 134 (269)
Q Consensus 57 ~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~ 134 (269)
+.+++++|.++.+|...+ ++|+.|++++|+|+++++..|.++++|+.|+|++|+|+.++...| +++|+.|+|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~-----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-----TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCCccCCCcC-----CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 679999999999998753 689999999999999999999999999999999999999998876 8999999999
Q ss_pred CCcccccCccccCCCCCCCEEEccCCcceeeCc
Q psy14765 135 HNPINQISSYSFQSTPGIRYIDMSNCQIHTIYS 167 (269)
Q Consensus 135 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 167 (269)
+|+|+++++..|+.+++|+.|+|++|.+...+.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 999999988889999999999999998886543
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=1e-15 Score=129.96 Aligned_cols=145 Identities=14% Similarity=0.203 Sum_probs=126.8
Q ss_pred CCcEEEcCCCCCcccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765 34 GKRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (269)
Q Consensus 34 ~~~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 111 (269)
.-+.+++++|.++.+++ +. ++|+.|++++|.++.++. +. .+++|+.|++++|+|+.++ .+..+++|+.|++
T Consensus 69 ~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~--~l~~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l 141 (291)
T 1h6t_A 69 NVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS--LK--DLKKLKSLSLEHNGISDIN--GLVHLPQLESLYL 141 (291)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG--GT--TCTTCCEEECTTSCCCCCG--GGGGCTTCCEEEC
T ss_pred CCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh--hc--cCCCCCEEECCCCcCCCCh--hhcCCCCCCEEEc
Confidence 36899999999999876 33 899999999999999775 55 8999999999999999984 5889999999999
Q ss_pred CCCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCC
Q psy14765 112 SDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSAT 190 (269)
Q Consensus 112 ~~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~ 190 (269)
++|.++.++ ... +++|+.|++++|+++++++ +..+++|+.|++++|.++.++. +..++. ++.+.+++|.+...
T Consensus 142 ~~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~--l~~l~~-L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 142 GNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKN-LDVLELFSQECLNK 215 (291)
T ss_dssp CSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG--GTTCTT-CSEEEEEEEEEECC
T ss_pred cCCcCCcch-hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh--hccCCC-CCEEECcCCcccCC
Confidence 999999883 333 9999999999999999976 8999999999999999999853 667765 79999999987765
Q ss_pred C
Q psy14765 191 P 191 (269)
Q Consensus 191 ~ 191 (269)
+
T Consensus 216 ~ 216 (291)
T 1h6t_A 216 P 216 (291)
T ss_dssp C
T ss_pred c
Confidence 5
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=4.8e-16 Score=144.55 Aligned_cols=165 Identities=17% Similarity=0.199 Sum_probs=120.1
Q ss_pred CCcEEEcCCCCCcccCCCC-CCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765 34 GKRTVECIDRNFYTIPEGI-DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (269)
Q Consensus 34 ~~~~v~c~~~~l~~ip~~~-~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 112 (269)
.-+.++++++.+..+|..- .++|+.|+|++|.++.+++ +. .+++|+.|+|++|.|+.++ .+..+++|+.|+|+
T Consensus 44 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~--~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LT--NLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLE 117 (605)
T ss_dssp TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GG--GCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECT
T ss_pred CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hc--cCCCCCEEECcCCCCCCCh--hhccCCCCCEEEec
Confidence 3567788888887776421 2788888888888887776 44 7788888888888888765 47788888888888
Q ss_pred CCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCC
Q psy14765 113 DNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATP 191 (269)
Q Consensus 113 ~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~ 191 (269)
+|.++.++. .. +++|+.|+|++|.++++ ..+..+++|+.|+|++|.++++++ +..++. ++.+.+++|.+...+
T Consensus 118 ~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~-L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 118 HNGISDING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK-LQNLYLSKNHISDLR 191 (605)
T ss_dssp TSCCCCCGG-GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTT-CCEEECCSSCCCBCG
T ss_pred CCCCCCCcc-ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCC-CCEEECcCCCCCCCh
Confidence 888887653 33 78888888888888877 347778888888888888887765 566655 678888888776653
Q ss_pred ccccceecccccccccccCcccc
Q psy14765 192 CRIMWSINRKIYDHVNWNSNKIN 214 (269)
Q Consensus 192 ~~~~~~~~~~~l~~l~~~~n~~~ 214 (269)
.+.....++.+++.+|.+.
T Consensus 192 ----~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 192 ----ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp ----GGTTCTTCSEEECCSEEEE
T ss_pred ----HHccCCCCCEEEccCCcCc
Confidence 2333344667777777654
No 106
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.66 E-value=5.7e-16 Score=134.26 Aligned_cols=168 Identities=12% Similarity=0.153 Sum_probs=116.4
Q ss_pred CcEEEcCCCCCcccCCC-CCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCC
Q psy14765 35 KRTVECIDRNFYTIPEG-IDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~-~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 113 (269)
-+.++++++.+..++.. -.++++.|++++|.+..+++ +. .+++|+.|++++|.++.+.+ +..+++|+.|++++
T Consensus 157 L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 157 LNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LA--SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGN 230 (347)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG--GG--GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCS
T ss_pred CcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc--cc--CCCccceeecccCCCCCCch--hhcCCcCCEEEccC
Confidence 56788888887776651 12678888888888887776 44 67788888888888877765 67777888888888
Q ss_pred CCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCc
Q psy14765 114 NLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPC 192 (269)
Q Consensus 114 N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~ 192 (269)
|.++.++. .. +++|+.|++++|.++.++ .+..+++|+.|++++|.+++++ .+..++. ++.+.+++|.+...++
T Consensus 231 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~-L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 231 NKITDLSP-LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDIS--VLNNLSQ-LNSLFLNNNQLGNEDM 304 (347)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTT-CSEEECCSSCCCGGGH
T ss_pred CccCCCcc-hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEEccCCccCCCh--hhcCCCC-CCEEECcCCcCCCcCh
Confidence 88877765 33 777888888888777762 3677778888888888777763 3555554 6777777777655443
Q ss_pred cccceecccccccccccCcccccc
Q psy14765 193 RIMWSINRKIYDHVNWNSNKINIK 216 (269)
Q Consensus 193 ~~~~~~~~~~l~~l~~~~n~~~~~ 216 (269)
.. +.....++.+++.+|.+...
T Consensus 305 ~~--l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 305 EV--IGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp HH--HHTCTTCSEEECCSSSCCCC
T ss_pred hH--hhccccCCEEEccCCccccc
Confidence 22 22333467777777776543
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=8.4e-16 Score=122.98 Aligned_cols=148 Identities=14% Similarity=0.159 Sum_probs=121.1
Q ss_pred CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCC-cCCccC-cccccee
Q psy14765 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST-VPSLIY-IPYLKSI 131 (269)
Q Consensus 54 ~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~-l~~L~~L 131 (269)
++++.|++++|.++.++ . +. .+++|++|++++|.++.++ .+..+++|++|++++|.++. .+.... +++|+.|
T Consensus 44 ~~L~~L~l~~n~i~~l~-~-l~--~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-G-IE--YAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HTCCEEEEESSCCSCCT-T-GG--GCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred CCccEEeccCCCccChH-H-Hh--cCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 68999999999999888 3 44 7899999999999888774 58899999999999999996 444444 9999999
Q ss_pred ecCCCcccccCccccCCCCCCCEEEccCCc-ceeeCcccccccccCCCeeEEeeccccCCCccccceecccccccccccC
Q psy14765 132 NLAHNPINQISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNS 210 (269)
Q Consensus 132 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~ 210 (269)
++++|++++..+..++.+++|+.|++++|. ++.++ .+..++. ++.+.+++|.+...+ .+ .....++++++.+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~-L~~L~l~~n~i~~~~-~l---~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPE-LKSLNIQFDGVHDYR-GI---EDFPKLNQLYAFS 190 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSS-CCEEECTTBCCCCCT-TG---GGCSSCCEEEECB
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCC-CCEEECCCCCCcChH-Hh---ccCCCCCEEEeeC
Confidence 999999998777789999999999999998 88875 5677765 799999999887765 22 2333478888888
Q ss_pred cccc
Q psy14765 211 NKIN 214 (269)
Q Consensus 211 n~~~ 214 (269)
|+++
T Consensus 191 N~i~ 194 (197)
T 4ezg_A 191 QTIG 194 (197)
T ss_dssp C---
T ss_pred cccC
Confidence 8764
No 108
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=5.5e-16 Score=149.29 Aligned_cols=191 Identities=15% Similarity=0.143 Sum_probs=93.8
Q ss_pred CcEEEcCCCCCcccCC--CCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCC-CCEE
Q psy14765 35 KRTVECIDRNFYTIPE--GID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN-MDEL 109 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~--~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~-L~~L 109 (269)
-+.+++++|.++.+|. .+. ++|+.|++++|.++.+| .|. .+++|+.|++++|+++.++ ..+..+++ |+.|
T Consensus 550 L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~--~L~~L~~L~Ls~N~l~~lp-~~l~~l~~~L~~L 624 (876)
T 4ecn_A 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFG--TNVKLTDLKLDYNQIEEIP-EDFCAFTDQVEGL 624 (876)
T ss_dssp CCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCC--TTSEESEEECCSSCCSCCC-TTSCEECTTCCEE
T ss_pred ccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhc--CCCcceEEECcCCccccch-HHHhhccccCCEE
Confidence 4556666666665555 332 45666666666666555 344 5556666666666666443 23555555 6666
Q ss_pred EcCCCCCCCcCCccC-c--cccceeecCCCcc-----------------------------cccCccccCCCCCCCEEEc
Q psy14765 110 DLSDNLLSTVPSLIY-I--PYLKSINLAHNPI-----------------------------NQISSYSFQSTPGIRYIDM 157 (269)
Q Consensus 110 ~L~~N~l~~l~~~~~-l--~~L~~L~L~~N~i-----------------------------~~~~~~~~~~l~~L~~L~L 157 (269)
++++|.++.+|.... + ++|+.|++++|++ +.++...+..+++|+.|+|
T Consensus 625 ~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~L 704 (876)
T 4ecn_A 625 GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704 (876)
T ss_dssp ECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEEC
T ss_pred ECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEEC
Confidence 666666555553322 2 1244444444444 4343333334455555555
Q ss_pred cCCcceeeCccccccccc------CCCeeEEeeccccCCCccccceecccccccccccCccccccccceeecCCCeeeee
Q psy14765 158 SNCQIHTIYSEAFYVMVL------PGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVF 231 (269)
Q Consensus 158 ~~N~l~~~~~~~~~~l~~------~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~ 231 (269)
++|+++.++...+..... .++.+.++.|.+...|..+. ......++.+++++|.+...+..+........+.+
T Consensus 705 s~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~-~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~L 783 (876)
T 4ecn_A 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR-ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGI 783 (876)
T ss_dssp CSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGS-TTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEEC
T ss_pred CCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhh-hccCCCcCEEEeCCCCCCccchhhhcCCCCCEEEC
Confidence 555555555444433210 24555555555554443322 00122255555556655444444444444444444
No 109
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=3.4e-16 Score=123.02 Aligned_cols=127 Identities=13% Similarity=0.200 Sum_probs=66.4
Q ss_pred CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--cccccee
Q psy14765 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI 131 (269)
Q Consensus 54 ~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L 131 (269)
.+++.|++++|.++.++. ... ..++|+.|++++|.|+++ ..|..+++|++|++++|.++.+++..+ +++|+.|
T Consensus 19 ~~L~~L~l~~n~l~~i~~-~~~--~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN-LGA--TLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TSCEEEECTTSCCCSCCC-GGG--GTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCceEEEeeCCCCchhHH-hhh--cCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 355555555555555532 221 122556666666655555 245555556666666666555555443 5556666
Q ss_pred ecCCCcccccCc-cccCCCCCCCEEEccCCcceeeCcc---cccccccCCCeeEEeecc
Q psy14765 132 NLAHNPINQISS-YSFQSTPGIRYIDMSNCQIHTIYSE---AFYVMVLPGSNLTLDCRV 186 (269)
Q Consensus 132 ~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~~l~~l~l~~n~ 186 (269)
++++|.++.++. ..+..+++|+.|++++|.++.++.. .+..++. ++.+++..|.
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~-L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQ-VRVLDFQKVK 151 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTT-CSEETTEECC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCc-cceeCCCcCC
Confidence 666665555533 2355555566666666655555433 2344443 4555555444
No 110
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.62 E-value=1.1e-14 Score=131.37 Aligned_cols=96 Identities=25% Similarity=0.338 Sum_probs=60.7
Q ss_pred CcEEEcCCCCCcccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765 35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 112 (269)
-+.++++++.++.+|. +. ++++.|++++|.++.++ +. .+++|++|++++|+|++++ +..+++|++|+++
T Consensus 44 L~~L~Ls~n~l~~~~~-l~~l~~L~~L~Ls~n~l~~~~---~~--~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 44 LTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTLD---LS--QNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCD 114 (457)
T ss_dssp CCEEECCSSCCCCCTT-GGGCTTCSEEECCSSCCSCCC---CT--TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECC
T ss_pred CCEEEccCCCcccChh-hcccCCCCEEEccCCcCCeEc---cc--cCCCCCEEECcCCCCceee---cCCCCcCCEEECC
Confidence 4667777777776652 32 56777777777776664 43 5666677777766666653 5666666666666
Q ss_pred CCCCCCcCCccC-ccccceeecCCCccccc
Q psy14765 113 DNLLSTVPSLIY-IPYLKSINLAHNPINQI 141 (269)
Q Consensus 113 ~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~ 141 (269)
+|.++.++ .. +++|+.|++++|+++++
T Consensus 115 ~N~l~~l~--~~~l~~L~~L~l~~N~l~~l 142 (457)
T 3bz5_A 115 TNKLTKLD--VSQNPLLTYLNCARNTLTEI 142 (457)
T ss_dssp SSCCSCCC--CTTCTTCCEEECTTSCCSCC
T ss_pred CCcCCeec--CCCCCcCCEEECCCCcccee
Confidence 66666654 22 66666666666666554
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=1.5e-16 Score=151.12 Aligned_cols=132 Identities=19% Similarity=0.239 Sum_probs=100.2
Q ss_pred CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC-ccccceee
Q psy14765 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSIN 132 (269)
Q Consensus 54 ~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~-l~~L~~L~ 132 (269)
..|+.|+|++|.+..++...| ++++|++|+|++|.|+.++ ..|.++++|++|+|++|.|+.+|..+. +++|++|+
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~---~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIF---KYDFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGG---GCCSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred CCCcEEECCCCCCCCCChhhc---CCCCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 578888888888888888877 6888888888888888665 567888888888888888888877766 88888888
Q ss_pred cCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCC
Q psy14765 133 LAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSAT 190 (269)
Q Consensus 133 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~ 190 (269)
|++|.|+.++.. |+.+++|+.|+|++|.|++.++..+.........+.+..|.+...
T Consensus 300 L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~ 356 (727)
T 4b8c_D 300 FFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP 356 (727)
T ss_dssp CCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCCCCccChh-hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc
Confidence 888888877544 888888888888888888777766655433222345555555443
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=8.9e-16 Score=117.18 Aligned_cols=109 Identities=22% Similarity=0.338 Sum_probs=65.3
Q ss_pred CCceEEEeecCCcc--ccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCC-cCCccC-ccccc
Q psy14765 54 LDTQVLDLSSNNIN--VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST-VPSLIY-IPYLK 129 (269)
Q Consensus 54 ~~l~~L~l~~n~l~--~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~-l~~L~ 129 (269)
++++.|++++|.++ .++. .|. .+++|+.|++++|.++.+ ..+..+++|++|++++|.++. +|.... +++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~--~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTD--EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCT--TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred ccCeEEEccCCcCChhHHHH-HHh--hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 45666666666666 4443 333 566666666666666666 446666666666666666665 333332 66666
Q ss_pred eeecCCCcccccC-ccccCCCCCCCEEEccCCcceeeCc
Q psy14765 130 SINLAHNPINQIS-SYSFQSTPGIRYIDMSNCQIHTIYS 167 (269)
Q Consensus 130 ~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~ 167 (269)
.|++++|++++++ +..++.+++|+.|++++|.++++++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 6666666666653 2445666666666666666666654
No 113
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.62 E-value=1.2e-14 Score=125.99 Aligned_cols=146 Identities=16% Similarity=0.253 Sum_probs=98.3
Q ss_pred CCcEEEcCCCCCcccCCC-CCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765 34 GKRTVECIDRNFYTIPEG-IDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (269)
Q Consensus 34 ~~~~v~c~~~~l~~ip~~-~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 112 (269)
.-+.++++++.+..+|.- -.++++.|++++|.++.+++ |. ++++|++|++++|.++.++ .|..+++|++|+++
T Consensus 45 ~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~--~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 45 SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LS--NLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLN 118 (347)
T ss_dssp TCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECT
T ss_pred cccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hh--cCCcCCEEEccCCcccCch--HHcCCCcCCEEECc
Confidence 357888888888887651 12788888888888888777 55 7888888888888888874 47888888888888
Q ss_pred CCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCC
Q psy14765 113 DNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSAT 190 (269)
Q Consensus 113 ~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~ 190 (269)
+|.++.++. .. +++|+.|++++|......+. +..+++|+.|++++|.++.+++ +..++. ++.+.+++|.+...
T Consensus 119 ~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~-L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 119 EDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTD-LYSLSLNYNQIEDI 192 (347)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTT-CSEEECTTSCCCCC
T ss_pred CCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCC-CCEEEccCCccccc
Confidence 888887765 33 77777777777743333222 5566666666666666655543 333333 45555555544433
No 114
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=9.5e-16 Score=120.48 Aligned_cols=127 Identities=17% Similarity=0.269 Sum_probs=108.7
Q ss_pred CcEEEcCCCCCcccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765 35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 112 (269)
-+.++++++.++.+|.... ++++.|++++|.++.+ ..|. ++++|++|++++|+|+.+++..|..+++|++|+++
T Consensus 21 L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 21 DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFP--LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp CEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCC--CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred ceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccc--cCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 5789999999998865222 4899999999999988 4566 88999999999999999988878899999999999
Q ss_pred CCCCCCcCC--ccC-ccccceeecCCCcccccCcc---ccCCCCCCCEEEccCCcceee
Q psy14765 113 DNLLSTVPS--LIY-IPYLKSINLAHNPINQISSY---SFQSTPGIRYIDMSNCQIHTI 165 (269)
Q Consensus 113 ~N~l~~l~~--~~~-l~~L~~L~L~~N~i~~~~~~---~~~~l~~L~~L~L~~N~l~~~ 165 (269)
+|.++.++. ... +++|+.|++++|+++.++.. .++.+++|+.|++++|.+.+.
T Consensus 97 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 97 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 999998886 344 89999999999999988554 478899999999999987764
No 115
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.61 E-value=1.4e-14 Score=130.58 Aligned_cols=182 Identities=16% Similarity=0.122 Sum_probs=146.5
Q ss_pred CCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCC
Q psy14765 34 GKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113 (269)
Q Consensus 34 ~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 113 (269)
.-+.++++++.++.+|-.-.++++.|++++|.++.++ |. ++++|++|++++|++++++ +..+++|++|++++
T Consensus 65 ~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~---~~--~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~ 136 (457)
T 3bz5_A 65 GLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD---VT--PLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCAR 136 (457)
T ss_dssp TCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC---CT--TCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTT
T ss_pred CCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee---cC--CCCcCCEEECCCCcCCeec---CCCCCcCCEEECCC
Confidence 4689999999999998555589999999999999885 65 8999999999999999984 88999999999999
Q ss_pred CCCCCcCCccC-ccccceeecCCCc-ccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCC
Q psy14765 114 NLLSTVPSLIY-IPYLKSINLAHNP-INQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATP 191 (269)
Q Consensus 114 N~l~~l~~~~~-l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~ 191 (269)
|+++.++ .. +++|+.|++++|+ +..+ .++.+++|+.|++++|++++++ +..++. ++.+.++.|.+...+
T Consensus 137 N~l~~l~--l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~---l~~l~~-L~~L~l~~N~l~~~~ 207 (457)
T 3bz5_A 137 NTLTEID--VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD---VSQNKL-LNRLNCDTNNITKLD 207 (457)
T ss_dssp SCCSCCC--CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC---CTTCTT-CCEEECCSSCCSCCC
T ss_pred Cccceec--cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec---cccCCC-CCEEECcCCcCCeec
Confidence 9999885 44 9999999999994 5555 3788999999999999999986 455554 789999999887763
Q ss_pred ccccceecccccccccccCccccccccceeecCCCeeeeeeccceeee
Q psy14765 192 CRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSGGVDLAA 239 (269)
Q Consensus 192 ~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~ 239 (269)
+.....++.+++.+|++...+ +..........+..+.+.+.
T Consensus 208 -----l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 208 -----LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp -----CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC
T ss_pred -----cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCc
Confidence 223345888899999886654 44455555666666554443
No 116
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.61 E-value=7.9e-15 Score=132.36 Aligned_cols=162 Identities=19% Similarity=0.265 Sum_probs=84.9
Q ss_pred cEEEcCCCCCcccCC-CCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCC
Q psy14765 36 RTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114 (269)
Q Consensus 36 ~~v~c~~~~l~~ip~-~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 114 (269)
+.++++++.+..+++ +..++++.|++++|.++.++ .+. .+++|+.|++++|.++++++ +..+++|+.|++++|
T Consensus 202 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 275 (466)
T 1o6v_A 202 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 275 (466)
T ss_dssp SEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGG--GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred CEEEecCCcccccccccccCCCCEEECCCCCcccch--hhh--cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCC
Confidence 445555555444332 11245555555555555543 233 45566666666666655544 555666666666666
Q ss_pred CCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCcc
Q psy14765 115 LLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCR 193 (269)
Q Consensus 115 ~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~ 193 (269)
.++.++. .. +++|+.|++++|+++++++ ++.+++|+.|++++|+++++++ +..++. ++.+.+++|.+...+
T Consensus 276 ~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~-L~~L~l~~n~l~~~~-- 347 (466)
T 1o6v_A 276 QISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTK-LQRLFFYNNKVSDVS-- 347 (466)
T ss_dssp CCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTT-CCEEECCSSCCCCCG--
T ss_pred ccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCcc-CCEeECCCCccCCch--
Confidence 6665544 22 5566666666666665543 4555666666666666665543 333333 455666655554442
Q ss_pred ccceecccccccccccCccc
Q psy14765 194 IMWSINRKIYDHVNWNSNKI 213 (269)
Q Consensus 194 ~~~~~~~~~l~~l~~~~n~~ 213 (269)
++.....++.+++.+|.+
T Consensus 348 --~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 348 --SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp --GGTTCTTCCEEECCSSCC
T ss_pred --hhccCCCCCEEeCCCCcc
Confidence 222233355555555555
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=5.8e-16 Score=118.20 Aligned_cols=121 Identities=15% Similarity=0.206 Sum_probs=105.1
Q ss_pred CcEEEcCCCCCc--ccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765 35 KRTVECIDRNFY--TIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (269)
Q Consensus 35 ~~~v~c~~~~l~--~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 110 (269)
-+.++++++.++ .+|..+. ++++.|++++|.++.+ ..|. .+++|++|++++|+|+...+..+..+++|++|+
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLP--KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCC--CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhh--cCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 578999999998 7887544 7999999999999988 5566 889999999999999996677888899999999
Q ss_pred cCCCCCCCcC--CccC-ccccceeecCCCcccccCc---cccCCCCCCCEEEccC
Q psy14765 111 LSDNLLSTVP--SLIY-IPYLKSINLAHNPINQISS---YSFQSTPGIRYIDMSN 159 (269)
Q Consensus 111 L~~N~l~~l~--~~~~-l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~L~~ 159 (269)
+++|.++.++ .... +++|+.|++++|+++++++ ..++.+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999875 4444 9999999999999999977 5688899999998864
No 118
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.59 E-value=8.3e-15 Score=132.21 Aligned_cols=165 Identities=18% Similarity=0.207 Sum_probs=127.6
Q ss_pred CcEEEcCCCCCcccCCCC-CCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCC
Q psy14765 35 KRTVECIDRNFYTIPEGI-DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~-~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 113 (269)
-+.++++++.++.++... .++++.|++++|.++.+++ +. ++++|+.|++++|.++.+++ +..+++|+.|++++
T Consensus 223 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~ 296 (466)
T 1o6v_A 223 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNE 296 (466)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GT--TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred CCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hh--cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCC
Confidence 578888998888775422 2789999999999988776 55 78889999999999988866 78888899999999
Q ss_pred CCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCc
Q psy14765 114 NLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPC 192 (269)
Q Consensus 114 N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~ 192 (269)
|+++.++. .. +++|+.|++++|+++++.+ ++.+++|+.|++++|++++++ .+..++. ++.+.+++|.+...++
T Consensus 297 n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~-L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 297 NQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS--SLANLTN-INWLSAGHNQISDLTP 370 (466)
T ss_dssp SCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG--GGTTCTT-CCEEECCSSCCCBCGG
T ss_pred CcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch--hhccCCC-CCEEeCCCCccCccch
Confidence 99887766 33 8889999999998888865 678888899999988888873 4566665 7888888888776654
Q ss_pred cccceecccccccccccCccccc
Q psy14765 193 RIMWSINRKIYDHVNWNSNKINI 215 (269)
Q Consensus 193 ~~~~~~~~~~l~~l~~~~n~~~~ 215 (269)
+ .....++.+++.+|.+..
T Consensus 371 -~---~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 371 -L---ANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp -G---TTCTTCCEEECCCEEEEC
T ss_pred -h---hcCCCCCEEeccCCcccC
Confidence 2 233346777777777654
No 119
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.58 E-value=4.5e-14 Score=131.64 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=37.9
Q ss_pred CcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccc
Q psy14765 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~ 96 (269)
-+.+++++|.++.+|. .+++|+.|++++|+|+.++. .+++|++|++++|+|+.++
T Consensus 63 L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~l~~l~ 117 (622)
T 3g06_A 63 ITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSLPV------LPPGLLELSIFSNPLTHLP 117 (622)
T ss_dssp CSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSCCCC------CCTTCCEEEECSCCCCCCC
T ss_pred CcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCcCCC------CCCCCCEEECcCCcCCCCC
Confidence 5778888888888777 45778888888888777665 2355666666666555554
No 120
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.58 E-value=8.1e-14 Score=125.48 Aligned_cols=162 Identities=17% Similarity=0.244 Sum_probs=95.4
Q ss_pred cEEEcCCCCCcccCCCCCCCceEEEeecCCcccccccccccc--------------C-CCcccEEEcccccccccchhhh
Q psy14765 36 RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM--------------G-ITNIQKLYLRKCKLEFVDDRAF 100 (269)
Q Consensus 36 ~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~--------------~-l~~L~~L~L~~N~i~~~~~~~~ 100 (269)
+.+++++++++.+|. ++++++.|++++|.++.++... ..+ . .++|++|++++|++++++ .|
T Consensus 74 ~~L~l~~~~l~~lp~-~~~~L~~L~l~~n~l~~lp~~~-~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp--~~ 149 (454)
T 1jl5_A 74 HELELNNLGLSSLPE-LPPHLESLVASCNSLTELPELP-QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP--EL 149 (454)
T ss_dssp SEEECTTSCCSCCCS-CCTTCSEEECCSSCCSSCCCCC-TTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC--CC
T ss_pred CEEEecCCccccCCC-CcCCCCEEEccCCcCCcccccc-CCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc--cc
Confidence 556666666665555 3455555555555555544211 000 1 146777777777777765 37
Q ss_pred cCCCCCCEEEcCCCCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCee
Q psy14765 101 RGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNL 180 (269)
Q Consensus 101 ~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l 180 (269)
.++++|++|++++|+++.+|.. ..+|++|++++|++++++ .++++++|+.|++++|++++++... ..++.+
T Consensus 150 ~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~~-----~~L~~L 220 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDLP-----LSLESI 220 (454)
T ss_dssp TTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCCC-----TTCCEE
T ss_pred CCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCCc-----CcccEE
Confidence 7777777777777777776643 357777777777777764 3777777777777777777655321 124566
Q ss_pred EEeeccccCCCccccceecccccccccccCcccc
Q psy14765 181 TLDCRVQSATPCRIMWSINRKIYDHVNWNSNKIN 214 (269)
Q Consensus 181 ~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~ 214 (269)
.++.|.+...+ .+. ....++.+++.+|++.
T Consensus 221 ~l~~n~l~~lp-~~~---~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 221 VAGNNILEELP-ELQ---NLPFLTTIYADNNLLK 250 (454)
T ss_dssp ECCSSCCSSCC-CCT---TCTTCCEEECCSSCCS
T ss_pred ECcCCcCCccc-ccC---CCCCCCEEECCCCcCC
Confidence 66666555444 221 2223555555555543
No 121
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=1.2e-14 Score=135.26 Aligned_cols=182 Identities=18% Similarity=0.171 Sum_probs=142.8
Q ss_pred EcCCCCCcccCCC-CCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCC
Q psy14765 39 ECIDRNFYTIPEG-IDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117 (269)
Q Consensus 39 ~c~~~~l~~ip~~-~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 117 (269)
.+..+.+..++.. -.+.|+.|++++|.+..++. +. .+++|+.|+|++|+|+.+++ +..+++|+.|+|++|.++
T Consensus 27 ~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~--~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 27 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQ--YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK 100 (605)
T ss_dssp HTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GG--GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred hccCCCcccccchhcCCCCCEEECcCCCCCCChH--Hc--cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC
Confidence 3444555543331 12789999999999999874 55 79999999999999999987 889999999999999999
Q ss_pred CcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCccccc
Q psy14765 118 TVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMW 196 (269)
Q Consensus 118 ~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~ 196 (269)
.++. +. +++|+.|+|++|.+.+++ .+..+++|+.|+|++|.++++ ..+..++. ++.+.+++|.+...++
T Consensus 101 ~l~~-l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~-L~~L~Ls~N~l~~~~~---- 170 (605)
T 1m9s_A 101 DLSS-LKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTK-LDTLSLEDNQISDIVP---- 170 (605)
T ss_dssp CCTT-STTCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTT-CSEEECCSSCCCCCGG----
T ss_pred CChh-hccCCCCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCC-CCEEECcCCcCCCchh----
Confidence 9873 44 999999999999999974 388999999999999999998 46677766 8999999999887765
Q ss_pred eecccccccccccCccccccccceeecCCCeeeeeecccee
Q psy14765 197 SINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSGGVDL 237 (269)
Q Consensus 197 ~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~ 237 (269)
+.....++.+++++|.+...+ .+....+...+.+..+.+.
T Consensus 171 l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCc
Confidence 333445888999999886543 3444555555555555443
No 122
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.57 E-value=1e-13 Score=124.85 Aligned_cols=137 Identities=12% Similarity=0.228 Sum_probs=81.6
Q ss_pred cEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCC
Q psy14765 36 RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115 (269)
Q Consensus 36 ~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 115 (269)
+.+++++|.++.+|. .+++++.|++++|.++.+| .|. ++++|++|++++|++++++.. ..+|++|++++|.
T Consensus 114 ~~L~l~~n~l~~l~~-~~~~L~~L~L~~n~l~~lp--~~~--~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~ 184 (454)
T 1jl5_A 114 KSLLVDNNNLKALSD-LPPLLEYLGVSNNQLEKLP--ELQ--NSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQ 184 (454)
T ss_dssp CEEECCSSCCSCCCS-CCTTCCEEECCSSCCSSCC--CCT--TCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSC
T ss_pred cEEECCCCccCcccC-CCCCCCEEECcCCCCCCCc--ccC--CCCCCCEEECCCCcCcccCCC----cccccEEECcCCc
Confidence 445555555554443 2367888888888888877 366 788888888888888876532 3467777777777
Q ss_pred CCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccC
Q psy14765 116 LSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSA 189 (269)
Q Consensus 116 l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~ 189 (269)
++.+|. .. +++|+.|++++|.+++++.. .++|+.|++++|.++.++. +..++. ++.+.++.|.+..
T Consensus 185 l~~l~~-~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp~--~~~l~~-L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 185 LEELPE-LQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELPE--LQNLPF-LTTIYADNNLLKT 251 (454)
T ss_dssp CSSCCC-CTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCCC--CTTCTT-CCEEECCSSCCSS
T ss_pred CCcCcc-ccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCcccc--cCCCCC-CCEEECCCCcCCc
Confidence 777663 33 66666666666666654321 1344555555555544431 333332 3444444444433
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=6.5e-15 Score=139.88 Aligned_cols=151 Identities=17% Similarity=0.172 Sum_probs=101.1
Q ss_pred CcEEEcCCCCCcccCCCCCCCceEEEeecCCccc---------cccccccccCCCcccEEEcccccccccchhhhcCCCC
Q psy14765 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINV---------LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN 105 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~---------i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 105 (269)
...+.+.++.+..+|..+. +.++|+.|.|.. +++..|. +++.|+.|+|++|.|..+++..+ .+++
T Consensus 175 ~~~l~L~~n~~~~~~~~~l---~~l~Ls~~~i~~~~~~~n~~~~~~~~~~--~l~~L~~L~Ls~n~l~~l~~~~~-~l~~ 248 (727)
T 4b8c_D 175 TPKIELFANGKDEANQALL---QHKKLSQYSIDEDDDIENRMVMPKDSKY--DDQLWHALDLSNLQIFNISANIF-KYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG-GCCS
T ss_pred cceEEeeCCCCCcchhhHh---hcCccCcccccCccccccceecChhhhc--cCCCCcEEECCCCCCCCCChhhc-CCCC
Confidence 4567777777777665443 334444444332 4566676 89999999999999999987655 8999
Q ss_pred CCEEEcCCCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEee
Q psy14765 106 MDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDC 184 (269)
Q Consensus 106 L~~L~L~~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~ 184 (269)
|+.|+|++|.|+.+|..+. +++|+.|+|++|.|+.+ |..|+.+++|++|+|++|.|+.+|.. |..+.. ++.+.+++
T Consensus 249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~-L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVTTLPWE-FGNLCN-LQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSCCCCCCSS-TTSCTT-CCCEECTT
T ss_pred CCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCCCCccChh-hhcCCC-ccEEeCCC
Confidence 9999999999999998777 99999999999999988 56699999999999999999999875 777776 89999999
Q ss_pred ccccCCCccc
Q psy14765 185 RVQSATPCRI 194 (269)
Q Consensus 185 n~~~~~~~~~ 194 (269)
|.+...++..
T Consensus 326 N~l~~~~p~~ 335 (727)
T 4b8c_D 326 NPLEKQFLKI 335 (727)
T ss_dssp SCCCSHHHHH
T ss_pred CccCCCChHH
Confidence 9988665544
No 124
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.51 E-value=5.2e-14 Score=122.04 Aligned_cols=104 Identities=21% Similarity=0.385 Sum_probs=94.7
Q ss_pred EEEeecC-CccccccccccccCCCcccEEEccc-ccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeec
Q psy14765 58 VLDLSSN-NINVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL 133 (269)
Q Consensus 58 ~L~l~~n-~l~~i~~~~f~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L 133 (269)
.++.+++ +++.||. +. .+++|+.|+|++ |+|+.+++..|.++++|+.|+|++|+|+.+++..| +++|+.|+|
T Consensus 12 ~v~~~~~n~l~~ip~--l~--~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LP--GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCCTTTTT--SC--SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred EEEcCCCCCCCccCC--CC--CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 4688888 9999998 55 789999999996 99999999999999999999999999999998887 999999999
Q ss_pred CCCcccccCccccCCCCCCCEEEccCCcceeeC
Q psy14765 134 AHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY 166 (269)
Q Consensus 134 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 166 (269)
++|+|+++++..|..+. |+.|+|.+|.+....
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCSC 119 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCG
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccCCC
Confidence 99999999988887776 999999999998653
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=9.7e-14 Score=119.67 Aligned_cols=154 Identities=19% Similarity=0.262 Sum_probs=99.1
Q ss_pred CCceEEEeecCCcc--------------------ccccccccccC--------CCcccEEEcccccccccchhhhcCCCC
Q psy14765 54 LDTQVLDLSSNNIN--------------------VLQKEIFLQMG--------ITNIQKLYLRKCKLEFVDDRAFRGVTN 105 (269)
Q Consensus 54 ~~l~~L~l~~n~l~--------------------~i~~~~f~~~~--------l~~L~~L~L~~N~i~~~~~~~~~~l~~ 105 (269)
++|+.|+|++|+|. .|++.+|. + +++|+.|++++ .++.|++.+|.++++
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~--~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFS--NVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDN 125 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTE--EEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTT
T ss_pred ccCeEEecCcceeEEecCccccccccccccccccccCHHHhc--ccccccccccCCCcEEECCc-cccchhHHHhhcCcc
Confidence 45666777766666 56777777 6 78888888887 788888888888888
Q ss_pred CCEEEcCCCCCCCcCCccC-------------------------------------------------------------
Q psy14765 106 MDELDLSDNLLSTVPSLIY------------------------------------------------------------- 124 (269)
Q Consensus 106 L~~L~L~~N~l~~l~~~~~------------------------------------------------------------- 124 (269)
|+.+++++|.+..++..+|
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 8888888887655555443
Q ss_pred -------------------ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCC-eeEEee
Q psy14765 125 -------------------IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGS-NLTLDC 184 (269)
Q Consensus 125 -------------------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~-~l~l~~ 184 (269)
+++|+.+++++|.++.++..+|.++.+|+.+++.+| ++.|+..+|..... ++ .+.+..
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~-L~~~l~l~~ 283 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGR-LAGTLELPA 283 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT-CCEEEEECT
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChh-ccEEEEEcc
Confidence 235666667766777777777777777777777666 66677777766664 45 666655
Q ss_pred ccccCCCccccceecccccccccccCccccc
Q psy14765 185 RVQSATPCRIMWSINRKIYDHVNWNSNKINI 215 (269)
Q Consensus 185 n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~ 215 (269)
+ +..++... +.++..++.+.+.+|.+..
T Consensus 284 ~-l~~I~~~a--F~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 284 S-VTAIEFGA--FMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp T-CCEECTTT--TTTCTTEEEEEECSSCCCE
T ss_pred c-ceEEchhh--hhCCccCCEEEeCCCccCc
Confidence 2 23333222 2223335555555555543
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.49 E-value=5.9e-14 Score=129.67 Aligned_cols=107 Identities=15% Similarity=0.211 Sum_probs=68.6
Q ss_pred cccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccC
Q psy14765 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSN 159 (269)
Q Consensus 81 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 159 (269)
.|+.|++++|+|++++. |..+++|+.|+|++|.|+.+|..+. +++|+.|+|++|.|++++ .++.+++|+.|+|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCC
Confidence 46666666666666643 6666666666666666666666555 666666666666666653 466666666666666
Q ss_pred CcceeeC-cccccccccCCCeeEEeeccccCCCc
Q psy14765 160 CQIHTIY-SEAFYVMVLPGSNLTLDCRVQSATPC 192 (269)
Q Consensus 160 N~l~~~~-~~~~~~l~~~l~~l~l~~n~~~~~~~ 192 (269)
|+|++++ +..+..++. ++.+.+++|.+...++
T Consensus 518 N~l~~~~~p~~l~~l~~-L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPR-LVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SCCCSSSTTGGGGGCTT-CCEEECTTSGGGGSSS
T ss_pred CCCCCCCCcHHHhcCCC-CCEEEecCCcCCCCcc
Confidence 6666664 555555554 5666666666655554
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.48 E-value=3.7e-13 Score=115.97 Aligned_cols=154 Identities=16% Similarity=0.155 Sum_probs=100.1
Q ss_pred CcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEccccc----ccccchhhh-------
Q psy14765 35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK----LEFVDDRAF------- 100 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~----i~~~~~~~~------- 100 (269)
-+.++..+ .++.|++..+ ++|+.+++++|.+..|++.+|. ++.++..+.+..+. ...+...+|
T Consensus 103 L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~--~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~ 179 (329)
T 3sb4_A 103 LEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALA--DSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE 179 (329)
T ss_dssp CCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSC--TTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred CcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhc--CCCceEEecCcchhhhhccccccccccccccccc
Confidence 56777777 7888887776 6788888888888877777776 55555555443311 011111111
Q ss_pred -------------------------------------------cCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCC
Q psy14765 101 -------------------------------------------RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAH 135 (269)
Q Consensus 101 -------------------------------------------~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~ 135 (269)
..+++|+.+++++|+++.|+..+| +.+|+.+++.+
T Consensus 180 ~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ 259 (329)
T 3sb4_A 180 TTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH 259 (329)
T ss_dssp EEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT
T ss_pred eeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc
Confidence 015667777777777777777777 67777777777
Q ss_pred CcccccCccccCCCCCCC-EEEccCCcceeeCcccccccccCCCeeEEeeccccCCCccc
Q psy14765 136 NPINQISSYSFQSTPGIR-YIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRI 194 (269)
Q Consensus 136 N~i~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~ 194 (269)
| ++.+...+|.++.+|+ .+++.+ .++.|++.+|..... ++.+.+..|.+..++...
T Consensus 260 n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~-L~~l~l~~n~i~~I~~~a 316 (329)
T 3sb4_A 260 N-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN-LRYVLATGDKITTLGDEL 316 (329)
T ss_dssp T-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT-EEEEEECSSCCCEECTTT
T ss_pred c-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc-CCEEEeCCCccCccchhh
Confidence 6 7777777777777777 777766 677777777776665 566777666655554433
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.45 E-value=2.8e-13 Score=125.15 Aligned_cols=118 Identities=19% Similarity=0.282 Sum_probs=100.9
Q ss_pred CCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCc
Q psy14765 43 RNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSL 122 (269)
Q Consensus 43 ~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 122 (269)
|.++.+|. ..++.|++++|.|+.+|. |. .+++|+.|++++|+|+.++ ..|.++++|+.|+|++|.|+.+| .
T Consensus 433 n~i~~l~~---~~L~~L~Ls~n~l~~lp~--~~--~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp-~ 503 (567)
T 1dce_A 433 NSVLKMEY---ADVRVLHLAHKDLTVLCH--LE--QLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVD-G 503 (567)
T ss_dssp HHHHHHHH---TTCSEEECTTSCCSSCCC--GG--GGTTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSSCCCCCG-G
T ss_pred ccccccCc---cCceEEEecCCCCCCCcC--cc--ccccCcEeecCcccccccc-hhhhcCCCCCEEECCCCCCCCCc-c
Confidence 34444443 358899999999999886 65 8899999999999999875 47899999999999999999988 4
Q ss_pred cC-ccccceeecCCCcccccC-ccccCCCCCCCEEEccCCcceeeCccc
Q psy14765 123 IY-IPYLKSINLAHNPINQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEA 169 (269)
Q Consensus 123 ~~-l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~ 169 (269)
+. +++|+.|+|++|.|+++. |..++.+++|+.|+|++|.++++++..
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 55 999999999999999997 778999999999999999999987643
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.41 E-value=5.8e-14 Score=122.64 Aligned_cols=102 Identities=22% Similarity=0.297 Sum_probs=48.7
Q ss_pred cEEEcCCCCCcccCC----CC---CC-CceEEEeecCCccccccccccccCC-----CcccEEEcccccccccchhhh--
Q psy14765 36 RTVECIDRNFYTIPE----GI---DL-DTQVLDLSSNNINVLQKEIFLQMGI-----TNIQKLYLRKCKLEFVDDRAF-- 100 (269)
Q Consensus 36 ~~v~c~~~~l~~ip~----~~---~~-~l~~L~l~~n~l~~i~~~~f~~~~l-----~~L~~L~L~~N~i~~~~~~~~-- 100 (269)
+.++.+++.+..++. .. .+ +++.|++++|.++......|. .+ ++|++|++++|+++...+..+
T Consensus 25 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~--~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV--QILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHH--HHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred eEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHH--HHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 455566655555443 11 12 555566666655554444333 22 555555555555555444322
Q ss_pred --cCC-CCCCEEEcCCCCCCCcCCccC-------ccccceeecCCCccc
Q psy14765 101 --RGV-TNMDELDLSDNLLSTVPSLIY-------IPYLKSINLAHNPIN 139 (269)
Q Consensus 101 --~~l-~~L~~L~L~~N~l~~l~~~~~-------l~~L~~L~L~~N~i~ 139 (269)
..+ ++|++|++++|.++..+...+ ..+|+.|++++|.++
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 222 455555555555554433221 024555555555544
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.40 E-value=3.6e-14 Score=123.95 Aligned_cols=176 Identities=19% Similarity=0.210 Sum_probs=129.0
Q ss_pred EEcCCCCCcc-cCCC--CCCCceEEEeecCCcccccc----ccccccCCC-cccEEEcccccccccchhhhcCC-----C
Q psy14765 38 VECIDRNFYT-IPEG--IDLDTQVLDLSSNNINVLQK----EIFLQMGIT-NIQKLYLRKCKLEFVDDRAFRGV-----T 104 (269)
Q Consensus 38 v~c~~~~l~~-ip~~--~~~~l~~L~l~~n~l~~i~~----~~f~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l-----~ 104 (269)
...+.+.++. +|.. .+.+++.|++++|.++.++. ..|. .++ +|++|++++|+|+...+..+..+ +
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFA--NTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH--TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHH--hCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 4556777764 3332 23679999999999999887 7776 788 89999999999999888777765 8
Q ss_pred CCCEEEcCCCCCCCcCCccC------c-cccceeecCCCcccccCcccc----CC-CCCCCEEEccCCcceeeCcccc--
Q psy14765 105 NMDELDLSDNLLSTVPSLIY------I-PYLKSINLAHNPINQISSYSF----QS-TPGIRYIDMSNCQIHTIYSEAF-- 170 (269)
Q Consensus 105 ~L~~L~L~~N~l~~l~~~~~------l-~~L~~L~L~~N~i~~~~~~~~----~~-l~~L~~L~L~~N~l~~~~~~~~-- 170 (269)
+|++|++++|.++..+...+ . ++|+.|++++|+++......+ .. .++|++|+|++|.++......+
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 99999999999997655433 2 799999999999998876543 34 3689999999999986544333
Q ss_pred --cccccCCCeeEEeeccccCCCccccc-e-ecc-cccccccccCccccc
Q psy14765 171 --YVMVLPGSNLTLDCRVQSATPCRIMW-S-INR-KIYDHVNWNSNKINI 215 (269)
Q Consensus 171 --~~l~~~l~~l~l~~n~~~~~~~~~~~-~-~~~-~~l~~l~~~~n~~~~ 215 (269)
...+..++.+.++.|.++...+.... . ... ..++.+++++|.++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 33333478888888887665532111 1 111 247777888887754
No 131
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.38 E-value=1.6e-13 Score=118.14 Aligned_cols=170 Identities=16% Similarity=0.107 Sum_probs=104.0
Q ss_pred CcEEEcCCCCCcccCCCCC--CCceEEEeecCCcccc-ccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765 35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVL-QKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n~l~~i-~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 111 (269)
-+.++++++.+...+..+. ++++.|++++|.++.. .+..+. .+++|++|++++|.++...+..+..+++|++|++
T Consensus 72 l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 72 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS--QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT--TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHh--hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 4566666666666555444 6788888888887742 333444 6788888888888877766677777888888888
Q ss_pred CCC-CCCC--cCCccC-ccccceeecCCC-ccccc-CccccCCCC-CCCEEEccCCc--ce--eeCcccccccccCCCee
Q psy14765 112 SDN-LLST--VPSLIY-IPYLKSINLAHN-PINQI-SSYSFQSTP-GIRYIDMSNCQ--IH--TIYSEAFYVMVLPGSNL 180 (269)
Q Consensus 112 ~~N-~l~~--l~~~~~-l~~L~~L~L~~N-~i~~~-~~~~~~~l~-~L~~L~L~~N~--l~--~~~~~~~~~l~~~l~~l 180 (269)
++| .++. ++.... +++|+.|++++| .+++. .+..+..++ +|+.|++++|. ++ .++ ..+..++. ++.+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~-~~~~~~~~-L~~L 227 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS-TLVRRCPN-LVHL 227 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH-HHHHHCTT-CSEE
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH-HHHhhCCC-CCEE
Confidence 888 5663 443333 777788888777 77653 133455666 77777777773 33 222 23333443 5666
Q ss_pred EEeecc-ccC-CCccccceecccccccccccCc
Q psy14765 181 TLDCRV-QSA-TPCRIMWSINRKIYDHVNWNSN 211 (269)
Q Consensus 181 ~l~~n~-~~~-~~~~~~~~~~~~~l~~l~~~~n 211 (269)
.+++|. +.. .+. .+.....++.+++.+|
T Consensus 228 ~l~~~~~l~~~~~~---~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 228 DLSDSVMLKNDCFQ---EFFQLNYLQHLSLSRC 257 (336)
T ss_dssp ECTTCTTCCGGGGG---GGGGCTTCCEEECTTC
T ss_pred eCCCCCcCCHHHHH---HHhCCCCCCEeeCCCC
Confidence 666665 222 222 2222234566666555
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=3.5e-15 Score=119.41 Aligned_cols=117 Identities=16% Similarity=0.228 Sum_probs=76.4
Q ss_pred CCcccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCC
Q psy14765 44 NFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS 121 (269)
Q Consensus 44 ~l~~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 121 (269)
.++.+|..+. ++++.|++++|.++.++ .|. ++++|+.|++++|+|+.++. .+..+++|+.|++++|+++.++
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~--~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l~- 109 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKIS--SLS--GMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS- 109 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCC--CHH--HHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCHH-
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcccc--ccc--cCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcCC-
Confidence 4444443332 57777777777777766 444 66777777777777776643 4555667777777777777765
Q ss_pred ccC-ccccceeecCCCcccccCc-cccCCCCCCCEEEccCCcceeeC
Q psy14765 122 LIY-IPYLKSINLAHNPINQISS-YSFQSTPGIRYIDMSNCQIHTIY 166 (269)
Q Consensus 122 ~~~-l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~ 166 (269)
... +++|+.|++++|+++.++. ..+..+++|+.|++++|.+++..
T Consensus 110 ~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 233 7777777777777776643 35667777777777777776553
No 133
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.32 E-value=2.8e-13 Score=116.61 Aligned_cols=173 Identities=13% Similarity=0.145 Sum_probs=129.6
Q ss_pred CCcEEEcCCCCCcc--cCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccc-ccccc-chhhhcCCCCCC
Q psy14765 34 GKRTVECIDRNFYT--IPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFV-DDRAFRGVTNMD 107 (269)
Q Consensus 34 ~~~~v~c~~~~l~~--ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N-~i~~~-~~~~~~~l~~L~ 107 (269)
.-+.++.+++.+.. +|..+. ++|+.|++++|.++...+..+. .+++|++|++++| .++.. .+..+..+++|+
T Consensus 94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~--~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA--KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT--TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh--cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 36889999998764 554333 7999999999999865566666 7899999999999 68753 345578899999
Q ss_pred EEEcCCC-CCCC--cCCccC-cc-ccceeecCCCc--cc--ccCccccCCCCCCCEEEccCCc-ceeeCcccccccccCC
Q psy14765 108 ELDLSDN-LLST--VPSLIY-IP-YLKSINLAHNP--IN--QISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYVMVLPG 177 (269)
Q Consensus 108 ~L~L~~N-~l~~--l~~~~~-l~-~L~~L~L~~N~--i~--~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~~l 177 (269)
+|++++| .++. ++.... ++ +|+.|++++|. ++ ++ +..+..+++|+.|++++|. ++......+..++. +
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~-L 249 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL-STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY-L 249 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH-HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT-C
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHH-HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC-C
Confidence 9999999 8884 454444 88 99999999994 43 34 4456788999999999998 66655556777765 7
Q ss_pred CeeEEeeccccCCCccccceecccccccccccCc
Q psy14765 178 SNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSN 211 (269)
Q Consensus 178 ~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n 211 (269)
+.+.++.|. ...+..+..+.+...++.+++.++
T Consensus 250 ~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 250 QHLSLSRCY-DIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CEEECTTCT-TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CEeeCCCCC-CCCHHHHHHHhcCCCCCEEeccCc
Confidence 999998876 333333334445556778887777
No 134
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.31 E-value=1.3e-13 Score=121.33 Aligned_cols=132 Identities=14% Similarity=0.135 Sum_probs=66.7
Q ss_pred CCceEEEeecCCccc----cccccccccCCCcccEEEcccccccccchhhhcC----C---------CCCCEEEcCCCCC
Q psy14765 54 LDTQVLDLSSNNINV----LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG----V---------TNMDELDLSDNLL 116 (269)
Q Consensus 54 ~~l~~L~l~~n~l~~----i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~----l---------~~L~~L~L~~N~l 116 (269)
++|+.|++++|.++. ..+..+. .+++|++|++++|.|+...+..+.. + ++|++|++++|++
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLS--KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHH--HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHH--hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 566666666666664 1222233 4566666666666665443333322 2 5666666666666
Q ss_pred C--CcCC---ccC-ccccceeecCCCccc--c---cCccccCCCCCCCEEEccCCcce----eeCcccccccccCCCeeE
Q psy14765 117 S--TVPS---LIY-IPYLKSINLAHNPIN--Q---ISSYSFQSTPGIRYIDMSNCQIH----TIYSEAFYVMVLPGSNLT 181 (269)
Q Consensus 117 ~--~l~~---~~~-l~~L~~L~L~~N~i~--~---~~~~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~~l~~l~ 181 (269)
+ .++. ... +++|+.|++++|+++ + +.+..+..+++|+.|+|++|.++ ...+..+..++. ++.+.
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~-L~~L~ 250 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN-LRELG 250 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT-CCEEE
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC-cCEEE
Confidence 5 2221 111 556666666666655 2 22324555566666666666653 111123333333 45555
Q ss_pred Eeecccc
Q psy14765 182 LDCRVQS 188 (269)
Q Consensus 182 l~~n~~~ 188 (269)
+++|.++
T Consensus 251 L~~n~i~ 257 (386)
T 2ca6_A 251 LNDCLLS 257 (386)
T ss_dssp CTTCCCC
T ss_pred CCCCCCc
Confidence 5555543
No 135
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=99.30 E-value=4.8e-12 Score=94.32 Aligned_cols=66 Identities=26% Similarity=0.515 Sum_probs=60.4
Q ss_pred CCCCCCeEeeeCCCcEEEcCCCCCc--ccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEccccccc
Q psy14765 22 SCPLGCSCKWKAGKRTVECIDRNFY--TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE 93 (269)
Q Consensus 22 ~cp~~C~C~~~~~~~~v~c~~~~l~--~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~ 93 (269)
+||..|.|. ..+|+|++++|+ .+|.+++.+++.|+|++|+|+.++++.|. ++++|+.|+|++|.+.
T Consensus 1 ~CP~~C~C~----~~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 1 PCPAPCSCA----GTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLD--ALPALRTAHLGANPWR 68 (130)
T ss_dssp CCCTTCEEE----TTEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGG--GCTTCCEEECCSSCCB
T ss_pred CcCCCCEEc----CCEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhh--hccccCEEEecCCCee
Confidence 599999998 689999999999 99999999999999999999999999998 8888999888888764
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.29 E-value=1e-14 Score=116.67 Aligned_cols=129 Identities=18% Similarity=0.236 Sum_probs=106.8
Q ss_pred CCceEEEeecC--CccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC-ccccce
Q psy14765 54 LDTQVLDLSSN--NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKS 130 (269)
Q Consensus 54 ~~l~~L~l~~n--~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~-l~~L~~ 130 (269)
-.++...+.+. .++.++. .|. .+++|++|++++|.|+.++ .+..+++|+.|++++|.++.+|.... +++|+.
T Consensus 23 l~l~~~~l~~~~~~l~~l~~-~~~--~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~ 97 (198)
T 1ds9_A 23 TEAEKVELHGMIPPIEKMDA-TLS--TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEE 97 (198)
T ss_dssp TTCSEEECCBCCTTCCCCHH-HHH--HTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSE
T ss_pred cchheeEeccccCcHhhhhH-HHh--cCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCE
Confidence 35555666554 5666666 455 7899999999999999986 78899999999999999999987555 899999
Q ss_pred eecCCCcccccCccccCCCCCCCEEEccCCcceeeCc-ccccccccCCCeeEEeeccccCC
Q psy14765 131 INLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYS-EAFYVMVLPGSNLTLDCRVQSAT 190 (269)
Q Consensus 131 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~~l~~l~l~~n~~~~~ 190 (269)
|++++|++++++ .+..+++|+.|++++|+++.++. ..+..++. ++.+.+++|.+...
T Consensus 98 L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~-L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 98 LWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDK-LEDLLLAGNPLYND 155 (198)
T ss_dssp EEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTT-CSEEEECSCHHHHH
T ss_pred EECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCC-CCEEEecCCccccc
Confidence 999999999985 48888999999999999998765 56666665 79999999987554
No 137
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.29 E-value=2.7e-13 Score=119.27 Aligned_cols=40 Identities=15% Similarity=0.063 Sum_probs=19.5
Q ss_pred CCCcccEEEcccccccc----cchhhhcCCCCCCEEEcCCCCCC
Q psy14765 78 GITNIQKLYLRKCKLEF----VDDRAFRGVTNMDELDLSDNLLS 117 (269)
Q Consensus 78 ~l~~L~~L~L~~N~i~~----~~~~~~~~l~~L~~L~L~~N~l~ 117 (269)
.+++|++|++++|.|+. ..+..+..+++|++|+|++|.++
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 34555555555555544 12334444555555555555554
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.26 E-value=4.9e-11 Score=105.56 Aligned_cols=141 Identities=16% Similarity=0.250 Sum_probs=91.6
Q ss_pred CcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765 35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 111 (269)
-+.+...+ .++.|+...+ .+|+.+++.+|.++.|+..+|. .++|+.+.+.+ .++.|...+|.++++|+.+++
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~---~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV---YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT---TCCCSEEECCT-TCCEECTTTTTTCTTCCCEEC
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe---ecccCEEEeCC-chheehhhHhhCCCCCCEEec
Confidence 45566554 6666766665 5677777777777777777773 46777777764 377777777777777777777
Q ss_pred CCCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcce-----eeCcccccccccCCCeeEEe
Q psy14765 112 SDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIH-----TIYSEAFYVMVLPGSNLTLD 183 (269)
Q Consensus 112 ~~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~~l~~l~l~ 183 (269)
..| ++.++..+| -.+|+.+.+ .+.++.+...+|.++++|+.+++.+|.+. .++...|..... ++.+.+.
T Consensus 234 ~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~-L~~l~l~ 308 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK-LARFEIP 308 (401)
T ss_dssp CTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT-CCEECCC
T ss_pred CCC-ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc-CCeEEeC
Confidence 653 566666666 556666666 34566666666666666666666665554 566666665554 4555555
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.25 E-value=1.5e-10 Score=102.52 Aligned_cols=143 Identities=22% Similarity=0.259 Sum_probs=99.6
Q ss_pred CcEEEcCCCCCcccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765 35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 112 (269)
-+.+...++ ++.|+...+ .+|+.+.+.. .++.|...+|. ++++|+.+++++|+++.++..+|. ..+|+.+.+.
T Consensus 137 L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~--~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 137 IAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFY--YCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTT--TCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred ccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhh--CcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 455665544 666776665 4677777764 67777777777 777777777777777777777776 4677777776
Q ss_pred CCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccc
Q psy14765 113 DNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQ 187 (269)
Q Consensus 113 ~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~ 187 (269)
. .++.|+..+| +++|+.+.+..| ++.+...+|.+ .+|+.+.+ .+.++.++..+|..... ++.+.+..+..
T Consensus 212 ~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~-L~~l~l~~~~~ 283 (401)
T 4fdw_A 212 V-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPE-LAEVTTYGSTF 283 (401)
T ss_dssp T-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTT-CCEEEEESSCC
T ss_pred C-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCC-CCEEEeCCccc
Confidence 3 3777777777 677777777764 66777777777 67777777 45577777777777665 67777766554
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.14 E-value=1.2e-12 Score=117.37 Aligned_cols=151 Identities=11% Similarity=0.084 Sum_probs=82.0
Q ss_pred CcEEEcCCCCCcccCC-CC-------CCCceEEEeecCCccccc----cccccccCCCcccEEEcccccccccc-----h
Q psy14765 35 KRTVECIDRNFYTIPE-GI-------DLDTQVLDLSSNNINVLQ----KEIFLQMGITNIQKLYLRKCKLEFVD-----D 97 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~-~~-------~~~l~~L~l~~n~l~~i~----~~~f~~~~l~~L~~L~L~~N~i~~~~-----~ 97 (269)
-+.++.+++.+..... .+ .++++.|++++|.++... +..+. .+++|+.|++++|.++... +
T Consensus 172 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~ 249 (461)
T 1z7x_W 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA--SKASLRELALGSNKLGDVGMAELCP 249 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH--HCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH--hCCCccEEeccCCcCChHHHHHHHH
Confidence 4677777776654211 11 236777777777776532 22333 4667777777777766533 2
Q ss_pred hhhcCCCCCCEEEcCCCCCCC-----cCCccC-ccccceeecCCCcccccCccccC-----CCCCCCEEEccCCcceeeC
Q psy14765 98 RAFRGVTNMDELDLSDNLLST-----VPSLIY-IPYLKSINLAHNPINQISSYSFQ-----STPGIRYIDMSNCQIHTIY 166 (269)
Q Consensus 98 ~~~~~l~~L~~L~L~~N~l~~-----l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~ 166 (269)
..+..+++|++|++++|.++. ++.... +++|+.|++++|.++......+. ..++|+.|++++|.++...
T Consensus 250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 329 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence 223346677777777777664 333333 56677777777766543222221 2246666666666665542
Q ss_pred cc----cccccccCCCeeEEeecccc
Q psy14765 167 SE----AFYVMVLPGSNLTLDCRVQS 188 (269)
Q Consensus 167 ~~----~~~~l~~~l~~l~l~~n~~~ 188 (269)
.. .+...+. ++.+++++|.++
T Consensus 330 ~~~l~~~l~~~~~-L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 330 CSHFSSVLAQNRF-LLELQISNNRLE 354 (461)
T ss_dssp HHHHHHHHHHCSS-CCEEECCSSBCH
T ss_pred HHHHHHHHhhCCC-ccEEEccCCccc
Confidence 21 1222232 456666666544
No 141
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.05 E-value=2e-11 Score=109.40 Aligned_cols=178 Identities=12% Similarity=0.170 Sum_probs=117.5
Q ss_pred CcEEEcCCCCCcccCCC--C--CCCceEEEeecCCccccc----cccccccCCCcccEEEcccccccccchhhh-cCCC-
Q psy14765 35 KRTVECIDRNFYTIPEG--I--DLDTQVLDLSSNNINVLQ----KEIFLQMGITNIQKLYLRKCKLEFVDDRAF-RGVT- 104 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~--~--~~~l~~L~l~~n~l~~i~----~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~-~~l~- 104 (269)
-+.++.+++.++..+.. + .++++.|++++|.++... +..+. .+++|++|++++|.++......+ ..++
T Consensus 5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALR--VNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHH--TCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHH--hCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 35678888887664422 1 178999999999988432 23344 67889999999999887554333 3455
Q ss_pred ---CCCEEEcCCCCCCC-----cCCccC-ccccceeecCCCcccccCccc-----cCCCCCCCEEEccCCcceeeCc---
Q psy14765 105 ---NMDELDLSDNLLST-----VPSLIY-IPYLKSINLAHNPINQISSYS-----FQSTPGIRYIDMSNCQIHTIYS--- 167 (269)
Q Consensus 105 ---~L~~L~L~~N~l~~-----l~~~~~-l~~L~~L~L~~N~i~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~--- 167 (269)
+|++|++++|.++. ++.... +++|+.|++++|.++...... +...++|+.|++++|.++....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 69999999999884 343333 889999999999987543322 2335679999999998887542
Q ss_pred -ccccccccCCCeeEEeeccccCCCcccc-cee--cccccccccccCccccc
Q psy14765 168 -EAFYVMVLPGSNLTLDCRVQSATPCRIM-WSI--NRKIYDHVNWNSNKINI 215 (269)
Q Consensus 168 -~~~~~l~~~l~~l~l~~n~~~~~~~~~~-~~~--~~~~l~~l~~~~n~~~~ 215 (269)
..+...+. ++.+.+++|.++....... ... ....++.+++.+|.+..
T Consensus 163 ~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 163 ASVLRAKPD-FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHHHHHCTT-CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred HHHHhhCCC-CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 23333443 7888888887654322111 000 11247788888887754
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.86 E-value=2.3e-10 Score=100.25 Aligned_cols=108 Identities=12% Similarity=0.126 Sum_probs=45.9
Q ss_pred CceEEEeecCCccccccc-cccccCCCcccEEEcccccccccchhhh-----cCCCCCCEEEcCCCCCCCcC-----Ccc
Q psy14765 55 DTQVLDLSSNNINVLQKE-IFLQMGITNIQKLYLRKCKLEFVDDRAF-----RGVTNMDELDLSDNLLSTVP-----SLI 123 (269)
Q Consensus 55 ~l~~L~l~~n~l~~i~~~-~f~~~~l~~L~~L~L~~N~i~~~~~~~~-----~~l~~L~~L~L~~N~l~~l~-----~~~ 123 (269)
+++.|++++|.++..... .+. .+++|+.|+|++|.|+......+ ...++|+.|+|++|.|+... ...
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~--~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLP--VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHH--HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CceEEEecCCCCCHHHHHHHHH--HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 455555555555422111 111 23445555555555544333222 12344555555555544211 111
Q ss_pred C-ccccceeecCCCcccccC----ccccCCCCCCCEEEccCCccee
Q psy14765 124 Y-IPYLKSINLAHNPINQIS----SYSFQSTPGIRYIDMSNCQIHT 164 (269)
Q Consensus 124 ~-l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~L~~N~l~~ 164 (269)
. .++|++|+|++|.|+... ...+...++|+.|+|++|.|+.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 1 344555555555544321 1223333445555555555543
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.84 E-value=7.4e-11 Score=103.40 Aligned_cols=161 Identities=11% Similarity=0.116 Sum_probs=112.7
Q ss_pred CCceEEEeecCCcccccccccccc---CCCcccEEEcccccccccchhhh-cCCCCCCEEEcCCCCCCCcCCccC-----
Q psy14765 54 LDTQVLDLSSNNINVLQKEIFLQM---GITNIQKLYLRKCKLEFVDDRAF-RGVTNMDELDLSDNLLSTVPSLIY----- 124 (269)
Q Consensus 54 ~~l~~L~l~~n~l~~i~~~~f~~~---~l~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~----- 124 (269)
+.++.|++++|.++......+... ..++|+.|+|++|.|+......+ ..+++|+.|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 689999999999987655544311 22689999999999976544333 346789999999999985433222
Q ss_pred --ccccceeecCCCcccccCc----cccCCCCCCCEEEccCCcceeeCc----ccccccccCCCeeEEeeccccCCCccc
Q psy14765 125 --IPYLKSINLAHNPINQISS----YSFQSTPGIRYIDMSNCQIHTIYS----EAFYVMVLPGSNLTLDCRVQSATPCRI 194 (269)
Q Consensus 125 --l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~~l~~l~l~~n~~~~~~~~~ 194 (269)
.++|+.|+|++|.|+.... ..+...++|++|+|++|.|+.... +.+.... .++.+++++|.++...+..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~-~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR-QLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS-CCCEEECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC-CcCeEECCCCCCCHHHHHH
Confidence 4779999999999976432 234677899999999999986542 2333343 3799999999876533211
Q ss_pred c--ceecccccccccccCccccc
Q psy14765 195 M--WSINRKIYDHVNWNSNKINI 215 (269)
Q Consensus 195 ~--~~~~~~~l~~l~~~~n~~~~ 215 (269)
. .+.....++.+++.+|.++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 1 11123448888999998763
No 144
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.60 E-value=2.2e-07 Score=81.11 Aligned_cols=124 Identities=15% Similarity=0.268 Sum_probs=84.9
Q ss_pred CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--cccccee
Q psy14765 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI 131 (269)
Q Consensus 54 ~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L 131 (269)
..++.+.+.. .+..+...+|. ++..|+.+.+..+ ++.+...+|.++.+|+.+.+.. .+..++..+| +.+|+.+
T Consensus 217 ~~l~~i~~~~-~~~~i~~~~f~--~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 217 KNLKKITITS-GVTTLGDGAFY--GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp SSCSEEECCT-TCCEECTTTTT--TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEE
T ss_pred cccceeeecc-ceeEEcccccc--CCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccc
Confidence 4566666643 36667777776 7777777777654 6777777777777777777754 3667777777 6777777
Q ss_pred ecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEee
Q psy14765 132 NLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDC 184 (269)
Q Consensus 132 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~ 184 (269)
.+.++.++.+...+|.++.+|+.+.|..+ ++.|...+|..... ++.+.+..
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~-L~~i~ip~ 342 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA-LSTISYPK 342 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT-CCCCCCCT
T ss_pred cccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC-CCEEEECC
Confidence 77777777777777777777777777543 77777777766543 45555543
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.42 E-value=1.1e-07 Score=87.64 Aligned_cols=126 Identities=10% Similarity=0.090 Sum_probs=75.4
Q ss_pred CCceEEEeecCCccccccccccccC-CCc-ccEEEccccc-ccccc-hhhhcCCCCCCEEEcCCCCCCCcCCcc-----C
Q psy14765 54 LDTQVLDLSSNNINVLQKEIFLQMG-ITN-IQKLYLRKCK-LEFVD-DRAFRGVTNMDELDLSDNLLSTVPSLI-----Y 124 (269)
Q Consensus 54 ~~l~~L~l~~n~l~~i~~~~f~~~~-l~~-L~~L~L~~N~-i~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~~-----~ 124 (269)
++|+.|++++|.++......+. . +++ |++|+++++. ++... +.....+++|++|+|++|.++.....+ .
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~--~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLA--KARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHH--HHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred CCCCeEEeeccEecHHHHHHHH--HhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 5788888888877644333332 2 234 8888887765 21111 112236778888888888765443221 1
Q ss_pred -ccccceeecCCCcccccCc----cccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEe
Q psy14765 125 -IPYLKSINLAHNPINQISS----YSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLD 183 (269)
Q Consensus 125 -l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~ 183 (269)
+++|+.|++++|.++++.. ..+.++++|+.|++++|.+.+++ ..+..++. ++.+.+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~-L~~L~l~ 251 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAAN-LEEFCGG 251 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTT-CCEEEEC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhH-HHhhccc
Confidence 6788888888888764332 23446678888888888777654 33444433 4555554
No 146
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.40 E-value=2.4e-06 Score=74.43 Aligned_cols=114 Identities=18% Similarity=0.283 Sum_probs=73.5
Q ss_pred CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--cccccee
Q psy14765 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI 131 (269)
Q Consensus 54 ~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L 131 (269)
..|+.+.+..+ ++.|...+|. ++.+|+.+.+.. .++.+...+|.++.+|+.+.+.++.++.|+..+| +.+|+.+
T Consensus 240 ~~L~~i~lp~~-v~~I~~~aF~--~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 240 KALDEIAIPKN-VTSIGSFLLQ--NCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp SSCCEEEECTT-CCEECTTTTT--TCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred ccceEEEcCCC-ccEeCccccc--eeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 45666666544 6666666666 666677766653 3666666667777777777776666776766666 5667777
Q ss_pred ecCCCcccccCccccCCCCCCCEEEccCCcceeeCccccccc
Q psy14765 132 NLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173 (269)
Q Consensus 132 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 173 (269)
.+..+ ++.|...+|.++.+|+.+.+..+ ++.|...+|.+.
T Consensus 316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 316 TLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred EcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 66543 66666666777667776666543 666666666544
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.32 E-value=2.6e-07 Score=76.91 Aligned_cols=86 Identities=14% Similarity=0.153 Sum_probs=58.6
Q ss_pred CCCcccE--EEcccccccccc---hhhhcCCCCCCEEEcCCCCCCCcCC--ccC--ccccceeecCCCcccccCc-cccC
Q psy14765 78 GITNIQK--LYLRKCKLEFVD---DRAFRGVTNMDELDLSDNLLSTVPS--LIY--IPYLKSINLAHNPINQISS-YSFQ 147 (269)
Q Consensus 78 ~l~~L~~--L~L~~N~i~~~~---~~~~~~l~~L~~L~L~~N~l~~l~~--~~~--l~~L~~L~L~~N~i~~~~~-~~~~ 147 (269)
..+.|.. ++++.|+...+. +-...++++|+.|+|++|+|+.++. ..+ +++|+.|+|++|+|+++.. ..+.
T Consensus 139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~ 218 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK 218 (267)
T ss_dssp GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc
Confidence 3445554 677777655443 2223467888899999998887653 222 8888999999998888722 2333
Q ss_pred CCCCCCEEEccCCccee
Q psy14765 148 STPGIRYIDMSNCQIHT 164 (269)
Q Consensus 148 ~l~~L~~L~L~~N~l~~ 164 (269)
.+ +|+.|+|++|.+.+
T Consensus 219 ~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 219 GL-KLEELWLDGNSLCD 234 (267)
T ss_dssp TS-CCSEEECTTSTTGG
T ss_pred cC-CcceEEccCCcCcc
Confidence 44 88889999998875
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.25 E-value=5.1e-06 Score=72.90 Aligned_cols=116 Identities=16% Similarity=0.289 Sum_probs=93.0
Q ss_pred CCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCccccc
Q psy14765 64 NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQI 141 (269)
Q Consensus 64 n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~ 141 (269)
+.++.+...+|. ++..|+.+.+.++ +..+...+|.++.+|+.+.+. +.++.++..+| +.+|+.+.+..+ ++.+
T Consensus 251 ~~v~~i~~~aF~--~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I 325 (394)
T 4gt6_A 251 NGVARIETHAFD--SCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQI 325 (394)
T ss_dssp TTEEEECTTTTT--TCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEE
T ss_pred CcceEcccceee--ecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEe
Confidence 456777888888 8888998888754 456778888888889998885 56888888888 788999988754 7888
Q ss_pred CccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeecc
Q psy14765 142 SSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRV 186 (269)
Q Consensus 142 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~ 186 (269)
...+|.++.+|+.+.+..+ ++.|...+|..... ++.+.+.++.
T Consensus 326 ~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~-L~~i~~~~~~ 368 (394)
T 4gt6_A 326 LDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA-LNNIEYSGSR 368 (394)
T ss_dssp CTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT-CCEEEESSCH
T ss_pred hHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC-CCEEEECCce
Confidence 8888989899999888654 88888888888765 6888887654
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.25 E-value=1.1e-05 Score=70.84 Aligned_cols=108 Identities=19% Similarity=0.325 Sum_probs=67.4
Q ss_pred cccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCcccc
Q psy14765 69 LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSF 146 (269)
Q Consensus 69 i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~ 146 (269)
+....|. +...++.+....+. ++..+|.++.+|+.+.+..+ ++.|+..+| +.+|+.+++..+ ++.+...+|
T Consensus 267 i~~~~F~--~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF 339 (394)
T 4fs7_A 267 IGGSLFY--NCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSF 339 (394)
T ss_dssp ECSCTTT--TCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTT
T ss_pred eeccccc--cccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhc
Confidence 4444444 44444444443322 34455666777777777544 666777777 677777777543 677777777
Q ss_pred CCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeec
Q psy14765 147 QSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCR 185 (269)
Q Consensus 147 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n 185 (269)
.++.+|+.+.+..+ ++.|...+|..... ++.+.+..+
T Consensus 340 ~~c~~L~~i~lp~~-l~~I~~~aF~~C~~-L~~i~lp~~ 376 (394)
T 4fs7_A 340 RGCTSLSNINFPLS-LRKIGANAFQGCIN-LKKVELPKR 376 (394)
T ss_dssp TTCTTCCEECCCTT-CCEECTTTBTTCTT-CCEEEEEGG
T ss_pred cCCCCCCEEEECcc-ccEehHHHhhCCCC-CCEEEECCC
Confidence 77777777777665 77777777776654 566666544
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.25 E-value=4e-06 Score=73.57 Aligned_cols=64 Identities=8% Similarity=0.186 Sum_probs=38.1
Q ss_pred CcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765 45 FYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (269)
Q Consensus 45 l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 112 (269)
+++|....+ .+|+.+.+. +.++.|...+|. ++++|+.+++.++ ++.+...+|.++.+|+.+.+.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp-~~i~~I~~~aF~--~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIP-STVREIGEFAFE--NCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECC-TTCCEECTTTTT--TCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred EeEhHHHHhhCCCCceEEEeC-CCccCcchhHhh--CCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 334544444 356666665 346666666666 6666666666543 666666666666666655544
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.24 E-value=5.2e-06 Score=72.89 Aligned_cols=123 Identities=14% Similarity=0.280 Sum_probs=81.3
Q ss_pred ccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccC
Q psy14765 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSN 159 (269)
Q Consensus 82 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 159 (269)
+..+.+. +.++.+...+|.++.+|+.+.+..+ +..+...+| +..|+.+.+. +.++.+...+|.++.+|+.+.+..
T Consensus 244 ~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 244 DPAFKIP-NGVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE 320 (394)
T ss_dssp CSEEECC-TTEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT
T ss_pred cceEEcC-CcceEcccceeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC
Confidence 4444443 3566777778888888888887654 445777777 7788888875 567777778888888888888865
Q ss_pred CcceeeCcccccccccCCCeeEEeeccccCCCccccceecccccccccccCcc
Q psy14765 160 CQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNK 212 (269)
Q Consensus 160 N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~ 212 (269)
+ ++.|...+|..... ++.+.+..+. ..+.... +.++..|+.+.+.++.
T Consensus 321 ~-v~~I~~~aF~~C~~-L~~i~ip~sv-~~I~~~a--F~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 321 G-ITQILDDAFAGCEQ-LERIAIPSSV-TKIPESA--FSNCTALNNIEYSGSR 368 (394)
T ss_dssp T-CCEECTTTTTTCTT-CCEEEECTTC-CBCCGGG--GTTCTTCCEEEESSCH
T ss_pred c-ccEehHhHhhCCCC-CCEEEECccc-CEEhHhH--hhCCCCCCEEEECCce
Confidence 4 77788888877654 5777776543 3333222 3344446666665554
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.22 E-value=2.1e-07 Score=73.26 Aligned_cols=108 Identities=13% Similarity=0.125 Sum_probs=58.0
Q ss_pred CCceEEEeecC-Ccccccc----ccccccCCCcccEEEcccccccccc----hhhhcCCCCCCEEEcCCCCCCCc-----
Q psy14765 54 LDTQVLDLSSN-NINVLQK----EIFLQMGITNIQKLYLRKCKLEFVD----DRAFRGVTNMDELDLSDNLLSTV----- 119 (269)
Q Consensus 54 ~~l~~L~l~~n-~l~~i~~----~~f~~~~l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~L~~N~l~~l----- 119 (269)
+.++.|++++| .|..-.. ..+. ..++|++|+|++|.|..-. ...+...++|++|+|++|.|..-
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~--~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALK--TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHT--TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHH--hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 45667777776 6653211 1122 3456777777777665422 22333445677777777766632
Q ss_pred CCccC-ccccceeec--CCCcccccC----ccccCCCCCCCEEEccCCcce
Q psy14765 120 PSLIY-IPYLKSINL--AHNPINQIS----SYSFQSTPGIRYIDMSNCQIH 163 (269)
Q Consensus 120 ~~~~~-l~~L~~L~L--~~N~i~~~~----~~~~~~l~~L~~L~L~~N~l~ 163 (269)
..... .+.|+.|+| ++|.|+.-. ...+...+.|+.|+|++|.+.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 22222 456677777 666665422 122334456667777666654
No 153
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.16 E-value=9.9e-07 Score=81.25 Aligned_cols=121 Identities=11% Similarity=0.138 Sum_probs=74.9
Q ss_pred CcEEEcCCCCCcccCCC-------CCCCceEEEeecCCccccccc----cccccCCCcccEEEcccccccccchhhhcCC
Q psy14765 35 KRTVECIDRNFYTIPEG-------IDLDTQVLDLSSNNINVLQKE----IFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103 (269)
Q Consensus 35 ~~~v~c~~~~l~~ip~~-------~~~~l~~L~l~~n~l~~i~~~----~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 103 (269)
-++++.+++.+...... -.++|+.|++++|.++.+... .+. ++++|+.|++++|.+.+++ ..+..+
T Consensus 166 L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~~~~l~-~~~~~~ 242 (592)
T 3ogk_B 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR--NCRSLVSVKVGDFEILELV-GFFKAA 242 (592)
T ss_dssp CSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH--HCTTCCEEECSSCBGGGGH-HHHHHC
T ss_pred CCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh--hCCCCcEEeccCccHHHHH-HHHhhh
Confidence 57888888876543211 126888999998888744432 233 5788999999988887764 456666
Q ss_pred CCCCEEEcCCC---------------------------CCCCcCCccC-ccccceeecCCCcccccCc-cccCCCCCCCE
Q psy14765 104 TNMDELDLSDN---------------------------LLSTVPSLIY-IPYLKSINLAHNPINQISS-YSFQSTPGIRY 154 (269)
Q Consensus 104 ~~L~~L~L~~N---------------------------~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~ 154 (269)
++|+.|+++.. ....++.... +++|+.|++++|.++.... ..++.+++|+.
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~ 322 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence 77777766532 2222333222 6677788887777654322 22455566666
Q ss_pred EEcc
Q psy14765 155 IDMS 158 (269)
Q Consensus 155 L~L~ 158 (269)
|+++
T Consensus 323 L~L~ 326 (592)
T 3ogk_B 323 LETR 326 (592)
T ss_dssp EEEE
T ss_pred Eecc
Confidence 6665
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.12 E-value=7.4e-07 Score=74.12 Aligned_cols=63 Identities=27% Similarity=0.304 Sum_probs=35.5
Q ss_pred CCCcccEEEcccccccccch--hhhcCCCCCCEEEcCCCCCCCcCCccCcc--ccceeecCCCcccc
Q psy14765 78 GITNIQKLYLRKCKLEFVDD--RAFRGVTNMDELDLSDNLLSTVPSLIYIP--YLKSINLAHNPINQ 140 (269)
Q Consensus 78 ~l~~L~~L~L~~N~i~~~~~--~~~~~l~~L~~L~L~~N~l~~l~~~~~l~--~L~~L~L~~N~i~~ 140 (269)
.+++|+.|+|++|+|+++.+ ..+..+++|+.|+|++|+|+.+..-..+. +|+.|+|++|++.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCcc
Confidence 35566666666666666542 34445666666666666666552211122 66666666666654
No 155
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.05 E-value=9e-07 Score=81.51 Aligned_cols=155 Identities=8% Similarity=-0.014 Sum_probs=82.4
Q ss_pred CCceEEEeec---------CCccccccccc-cccCCCcccEEEcccccccccchhhhc-CCCCCCEEEcC--C----CCC
Q psy14765 54 LDTQVLDLSS---------NNINVLQKEIF-LQMGITNIQKLYLRKCKLEFVDDRAFR-GVTNMDELDLS--D----NLL 116 (269)
Q Consensus 54 ~~l~~L~l~~---------n~l~~i~~~~f-~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~--~----N~l 116 (269)
++|+.|++.+ +.++......+ . ++++|+.|.+..|.++......+. .+++|+.|+++ + +.+
T Consensus 338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~--~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l 415 (594)
T 2p1m_B 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSM--GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL 415 (594)
T ss_dssp TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH--HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTT
T ss_pred CCCCEEEEecCcccccccCCCCCHHHHHHHHH--hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccc
Confidence 6788888743 34442221111 2 367777787777777765554443 46777777777 3 555
Q ss_pred CCcCCc------cC-ccccceeecCCCcccccCccccCC-CCCCCEEEccCCcceeeCcccc-cccccCCCeeEEeeccc
Q psy14765 117 STVPSL------IY-IPYLKSINLAHNPINQISSYSFQS-TPGIRYIDMSNCQIHTIYSEAF-YVMVLPGSNLTLDCRVQ 187 (269)
Q Consensus 117 ~~l~~~------~~-l~~L~~L~L~~N~i~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~-~~l~~~l~~l~l~~n~~ 187 (269)
+..|.. .. +++|+.|++++ .++......+.. +++|+.|++++|.++......+ ..++. ++.+.+++|.+
T Consensus 416 ~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~-L~~L~L~~n~~ 493 (594)
T 2p1m_B 416 TLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDS-LRKLEIRDCPF 493 (594)
T ss_dssp TCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTT-CCEEEEESCSC
T ss_pred cCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCC-cCEEECcCCCC
Confidence 544321 11 56777777765 444333333332 5667777777777654333222 22333 56777776665
Q ss_pred cCCCccccceecccccccccccCccc
Q psy14765 188 SATPCRIMWSINRKIYDHVNWNSNKI 213 (269)
Q Consensus 188 ~~~~~~~~~~~~~~~l~~l~~~~n~~ 213 (269)
+..... .+......++.+++.++.+
T Consensus 494 ~~~~~~-~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 494 GDKALL-ANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CHHHHH-HTGGGGGGSSEEEEESSCC
T ss_pred cHHHHH-HHHHhCCCCCEEeeeCCCC
Confidence 221110 0111223356666666554
No 156
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.02 E-value=7.9e-07 Score=81.87 Aligned_cols=38 Identities=8% Similarity=0.265 Sum_probs=15.5
Q ss_pred ccccceeecCCCcccccCcccc-CCCCCCCEEEccCCcc
Q psy14765 125 IPYLKSINLAHNPINQISSYSF-QSTPGIRYIDMSNCQI 162 (269)
Q Consensus 125 l~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~L~~N~l 162 (269)
+++|+.|++++|.+++.....+ ..+++|+.|+|++|.+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 3444444444444433222112 2334444444444444
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.86 E-value=7.9e-06 Score=71.07 Aligned_cols=154 Identities=12% Similarity=0.199 Sum_probs=90.7
Q ss_pred CCceEEEeecCCcc-----ccc----cccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcC-Ccc
Q psy14765 54 LDTQVLDLSSNNIN-----VLQ----KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP-SLI 123 (269)
Q Consensus 54 ~~l~~L~l~~n~l~-----~i~----~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~ 123 (269)
++|+.|.+..+... .+. ...+. .+|+|+.|.+++|.-..+++ + .+++|+.|++..+.+..-. ...
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~--~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLD--AMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHH--TCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHh--cCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHHHH
Confidence 68999988765432 111 12334 67899999998874223332 3 3788999999988876211 111
Q ss_pred --C-ccccceeecCC--Cc------ccccCcccc--CCCCCCCEEEccCCcceeeCccccc---ccccCCCeeEEeeccc
Q psy14765 124 --Y-IPYLKSINLAH--NP------INQISSYSF--QSTPGIRYIDMSNCQIHTIYSEAFY---VMVLPGSNLTLDCRVQ 187 (269)
Q Consensus 124 --~-l~~L~~L~L~~--N~------i~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~~l~~l~l~~n~~ 187 (269)
. +++|+.|+|+. |. +..+.+ .+ ..+++|+.|+|.+|.+.......+. .++. ++.+++++|.+
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~-L~~LdLs~n~L 291 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ-LETMDISAGVL 291 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGG-CSEEECCSSCC
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCC-CCEEECCCCCC
Confidence 1 78899998853 22 222211 12 2468999999999988742222221 2333 78899988876
Q ss_pred cCCCcc-cc-ceecccccccccccCcccc
Q psy14765 188 SATPCR-IM-WSINRKIYDHVNWNSNKIN 214 (269)
Q Consensus 188 ~~~~~~-~~-~~~~~~~l~~l~~~~n~~~ 214 (269)
+..... +. .+.....++.+++..|.++
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 652110 00 1112334777888888765
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.85 E-value=4.4e-06 Score=65.56 Aligned_cols=111 Identities=12% Similarity=0.097 Sum_probs=77.2
Q ss_pred CCCcccEEEcccc-cccccc----hhhhcCCCCCCEEEcCCCCCCCcC-----CccC-ccccceeecCCCcccccC----
Q psy14765 78 GITNIQKLYLRKC-KLEFVD----DRAFRGVTNMDELDLSDNLLSTVP-----SLIY-IPYLKSINLAHNPINQIS---- 142 (269)
Q Consensus 78 ~l~~L~~L~L~~N-~i~~~~----~~~~~~l~~L~~L~L~~N~l~~l~-----~~~~-l~~L~~L~L~~N~i~~~~---- 142 (269)
..+.|+.|+|++| .|..-. ...+...++|++|+|++|.|..-. .... .+.|+.|+|++|.|+...
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 6789999999999 887532 345667789999999999997422 1112 578999999999998632
Q ss_pred ccccCCCCCCCEEEc--cCCcceeeCccccccc-c--cCCCeeEEeecccc
Q psy14765 143 SYSFQSTPGIRYIDM--SNCQIHTIYSEAFYVM-V--LPGSNLTLDCRVQS 188 (269)
Q Consensus 143 ~~~~~~l~~L~~L~L--~~N~l~~~~~~~~~~l-~--~~l~~l~l~~n~~~ 188 (269)
...+...+.|+.|+| ++|.+..-....+... . ..+..+.++.|.++
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 344666788999999 8899876432222211 1 12566777666543
No 159
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.82 E-value=1.3e-05 Score=69.74 Aligned_cols=129 Identities=14% Similarity=0.084 Sum_probs=85.0
Q ss_pred CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhc--CCCCCCEEEcCC--CC------CCCcCCcc
Q psy14765 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR--GVTNMDELDLSD--NL------LSTVPSLI 123 (269)
Q Consensus 54 ~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~--~l~~L~~L~L~~--N~------l~~l~~~~ 123 (269)
++|+.|.++++.-..+++ + .+++|+.|++..+.++.-.-..+. .+++|+.|+|+. |. +..+....
T Consensus 172 P~L~~L~L~g~~~l~l~~--~---~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLSIGK--K---PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp TTCCEEEEECCBTCBCCS--C---BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred CCCcEEEEeCCCCceecc--c---cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 689999999884223333 3 578999999999887654433443 689999999853 22 21121111
Q ss_pred --C-ccccceeecCCCcccccCcccc---CCCCCCCEEEccCCcceeeCcccc----cccccCCCeeEEeecccc
Q psy14765 124 --Y-IPYLKSINLAHNPINQISSYSF---QSTPGIRYIDMSNCQIHTIYSEAF----YVMVLPGSNLTLDCRVQS 188 (269)
Q Consensus 124 --~-l~~L~~L~L~~N~i~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~~l~~l~l~~n~~~ 188 (269)
. +++|+.|+|.+|.+..-....+ ..+++|+.|+|+.|.++......+ ..++. ++.++++.|.++
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~-L~~L~L~~n~i~ 320 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH-LKFINMKYNYLS 320 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTT-CSEEECCSBBCC
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCc-ceEEECCCCcCC
Confidence 1 6899999999998874222111 246889999999999887432222 23343 688899887644
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.80 E-value=3.7e-05 Score=56.68 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=21.3
Q ss_pred EEEcCCCCCC--CcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCC
Q psy14765 108 ELDLSDNLLS--TVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNC 160 (269)
Q Consensus 108 ~L~L~~N~l~--~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 160 (269)
.++-+++.++ .+|..+ .++|+.|+|++|+|+.+++..|..+++|+.|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 3444444444 444322 223444444444444444444444444444433333
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.42 E-value=5.9e-05 Score=58.48 Aligned_cols=34 Identities=6% Similarity=0.196 Sum_probs=16.7
Q ss_pred ccceeecCCCc-ccccCccccCCCCCCCEEEccCC
Q psy14765 127 YLKSINLAHNP-INQISSYSFQSTPGIRYIDMSNC 160 (269)
Q Consensus 127 ~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N 160 (269)
+|+.|+|+++. |+.-.-..+..+++|+.|+++++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 45555555542 44322223444566666666654
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.27 E-value=0.00023 Score=55.15 Aligned_cols=91 Identities=20% Similarity=0.296 Sum_probs=65.3
Q ss_pred ccCCCC-C-CCceEEEeecCCccccccccccccCCCcccEEEccccc-ccccchhhhcCC----CCCCEEEcCCCC-CCC
Q psy14765 47 TIPEGI-D-LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRAFRGV----TNMDELDLSDNL-LST 118 (269)
Q Consensus 47 ~ip~~~-~-~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l----~~L~~L~L~~N~-l~~ 118 (269)
.+|... . ..|+.|+++++.|+...-..+. ++++|+.|+|+++. |+.-.-..+..+ ++|+.|+|+++. |+.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~--~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHME--GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGT--TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhc--CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 345532 2 5799999999998855444455 89999999999985 776544556554 379999999974 773
Q ss_pred cCCc-cC-ccccceeecCCCc-cc
Q psy14765 119 VPSL-IY-IPYLKSINLAHNP-IN 139 (269)
Q Consensus 119 l~~~-~~-l~~L~~L~L~~N~-i~ 139 (269)
-.-. +. +++|+.|++++.+ ++
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCC
Confidence 2211 22 8999999999864 44
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.27 E-value=0.0017 Score=51.12 Aligned_cols=82 Identities=15% Similarity=0.132 Sum_probs=44.6
Q ss_pred CCcccEEEcccc-cccccc----hhhhcCCCCCCEEEcCCCCCCCcCCccC------ccccceeecCCCcccccC----c
Q psy14765 79 ITNIQKLYLRKC-KLEFVD----DRAFRGVTNMDELDLSDNLLSTVPSLIY------IPYLKSINLAHNPINQIS----S 143 (269)
Q Consensus 79 l~~L~~L~L~~N-~i~~~~----~~~~~~l~~L~~L~L~~N~l~~l~~~~~------l~~L~~L~L~~N~i~~~~----~ 143 (269)
-+.|+.|+|++| .|..-. ..++..-+.|+.|+|++|.|..-....+ -..|+.|+|+.|.|..-. .
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 455666777664 554321 2344445567777777777663221111 356777777777765321 1
Q ss_pred cccCCCCCCCEEEccCC
Q psy14765 144 YSFQSTPGIRYIDMSNC 160 (269)
Q Consensus 144 ~~~~~l~~L~~L~L~~N 160 (269)
..+..-+.|+.|+|++|
T Consensus 120 ~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTTTCCCSEEECCCC
T ss_pred HHHhhCCceeEEECCCC
Confidence 23444456777777654
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.72 E-value=0.01 Score=46.65 Aligned_cols=107 Identities=9% Similarity=0.143 Sum_probs=69.8
Q ss_pred CCceEEEeecC-Ccccccc----ccccccCCCcccEEEcccccccccchh----hhcCCCCCCEEEcCCCCCCCcCCc--
Q psy14765 54 LDTQVLDLSSN-NINVLQK----EIFLQMGITNIQKLYLRKCKLEFVDDR----AFRGVTNMDELDLSDNLLSTVPSL-- 122 (269)
Q Consensus 54 ~~l~~L~l~~n-~l~~i~~----~~f~~~~l~~L~~L~L~~N~i~~~~~~----~~~~l~~L~~L~L~~N~l~~l~~~-- 122 (269)
+.|+.|++++| .|..-.. .... .-+.|+.|+|++|.|...... ++..-+.|+.|+|++|.|..-...
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~--~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAAC--NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHT--TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHh--hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 57899999985 7763221 1222 357899999999999865433 344557899999999999843221
Q ss_pred ---cC-ccccceeecCCCc---ccccC----ccccCCCCCCCEEEccCCcc
Q psy14765 123 ---IY-IPYLKSINLAHNP---INQIS----SYSFQSTPGIRYIDMSNCQI 162 (269)
Q Consensus 123 ---~~-l~~L~~L~L~~N~---i~~~~----~~~~~~l~~L~~L~L~~N~l 162 (269)
.- -..|+.|+|++|. +..-. ...+..-+.|..|+++.|.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 11 4569999998653 33211 22344456788888876654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=93.06 E-value=0.1 Score=36.08 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=39.0
Q ss_pred cCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCC
Q psy14765 63 SNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115 (269)
Q Consensus 63 ~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 115 (269)
+..++.|...+|. ++++|+.+.+..+ ++.|...+|.++.+|+.+.+....
T Consensus 5 g~~vt~I~~~aF~--~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFA--GNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTT--TCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhc--CCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 3567788888888 8888888888764 778888888888888888887654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=84.98 E-value=2.2 Score=29.22 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=32.1
Q ss_pred cccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCC
Q psy14765 89 KCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHN 136 (269)
Q Consensus 89 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N 136 (269)
+..++.|...+|.++.+|+.+.+..+ ++.|...+| +.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 44567777777777777777777653 566766666 677777766553
No 167
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=82.03 E-value=0.64 Score=32.03 Aligned_cols=28 Identities=21% Similarity=0.507 Sum_probs=23.3
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.++.+.|.|...+.+.+.+.|+.+...+
T Consensus 27 ~G~~~~l~C~~~G~P~p~v~W~k~g~~l 54 (107)
T 3knb_B 27 SGAEAELKCVVLGEPPPVVVWEKGGQQL 54 (107)
T ss_dssp TTSCEEEEEEEEEESCCEEEEEETTEEC
T ss_pred CCCcEEEEEEEEEecCCEEEEEECcccc
Confidence 3688999999989999999999876544
No 168
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=81.69 E-value=0.95 Score=34.82 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=22.1
Q ss_pred CCeeEEeeccccCCCccccceeccccc
Q psy14765 177 GSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 177 l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
+..+.|.|...+.+++.+.|..+...+
T Consensus 123 g~~v~l~C~~~g~p~p~v~W~~~g~~l 149 (212)
T 2yd6_A 123 TRTATMLCAASGNPDPEITWFKDFLPV 149 (212)
T ss_dssp TSCEEEEEEEECSSCCEEEEEETTEEC
T ss_pred CCCEEEEEEecCCCCCeEEEEECCccc
Confidence 578999999988889999999875433
No 169
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=77.40 E-value=1.4 Score=31.69 Aligned_cols=28 Identities=11% Similarity=0.256 Sum_probs=23.3
Q ss_pred CCeeEEeeccccCCCccccceecccccc
Q psy14765 177 GSNLTLDCRVQSATPCRIMWSINRKIYD 204 (269)
Q Consensus 177 l~~l~l~~n~~~~~~~~~~~~~~~~~l~ 204 (269)
...+.+.|...+.+.|.+.|+.+...+.
T Consensus 15 ~~~~~l~c~v~G~P~P~I~W~knG~~l~ 42 (126)
T 1he7_A 15 MHHWCIPFSVDGQPAPSLRWLFNGSVLN 42 (126)
T ss_dssp CCEEEEEEEECCSSCCEEEEEETTEECC
T ss_pred CccEEEEEEEeeeCCCeEEEEECCEECC
Confidence 4678899999999999999999875543
No 170
>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}
Probab=74.55 E-value=2.6 Score=28.87 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=23.0
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.+..+.|.|...+.+.+.+.|..+...+
T Consensus 23 ~G~~v~L~C~~~g~P~p~v~W~k~~~~~ 50 (117)
T 2v9t_A 23 KGEPATLNCKAEGRPTPTIEWYKGGERV 50 (117)
T ss_dssp TTCCEEECCEEEEESCCEEEEEETTEEC
T ss_pred CCCcEEEEEECCccCCCeEEEEECCEec
Confidence 3688999999988999999999875443
No 171
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=73.84 E-value=1.4 Score=35.86 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=19.4
Q ss_pred CCeeEEeeccccCCCc-cccceeccc
Q psy14765 177 GSNLTLDCRVQSATPC-RIMWSINRK 201 (269)
Q Consensus 177 l~~l~l~~n~~~~~~~-~~~~~~~~~ 201 (269)
+..+.|.|...+.+++ .+.|..+..
T Consensus 227 g~~v~l~C~~~g~P~p~~v~W~k~~~ 252 (308)
T 4fom_A 227 RKGVNLKCNADANPPPFKSVWSRLDG 252 (308)
T ss_dssp CCSCEEECCEEEESCEEEEECCBSSS
T ss_pred cccEEEEEEEecCCCCcEEEEEECCe
Confidence 4678899998888777 688987644
No 172
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=73.54 E-value=1.6 Score=29.49 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=23.5
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.++.+.|.|...+.+++.+.|..+...+
T Consensus 19 ~G~~~~l~C~~~g~P~p~v~W~k~g~~i 46 (100)
T 3knb_A 19 EGKVLTVACAFTGEPTPEVTWSCGGRKI 46 (100)
T ss_dssp TTSEEEEEEEEEEESCCEEEEEETTEEC
T ss_pred CCCeEEEEEEEEEecCCEEEEEECceEe
Confidence 3688999999999999999999876544
No 173
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=73.28 E-value=2.5 Score=34.55 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=38.4
Q ss_pred CCeeEEeeccccCCCc-cccceeccccccccc-ccCccccccccceeecCCCeeeeeeccceeeeecCCCcceeeecCce
Q psy14765 177 GSNLTLDCRVQSATPC-RIMWSINRKIYDHVN-WNSNKINIKEETVLSKDNSYLSVFSGGVDLAAASSPGGENIYDQKST 254 (269)
Q Consensus 177 l~~l~l~~n~~~~~~~-~~~~~~~~~~l~~l~-~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ 254 (269)
+..+.|.|...+.+++ .+.|..+...+.... ..++.+.+. -... -+++.|.|.+.+..+... ....
T Consensus 232 g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~~~~~~L~i~---~v~~-------~d~G~Y~C~a~N~~G~~~--~~~~ 299 (313)
T 4fqp_A 232 QNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIR---PVDK-------PINTTLICNVTNALGARQ--AELT 299 (313)
T ss_dssp CCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEEC---CCSS-------CCEEEEEEEEECSSCEEE--EEEE
T ss_pred CCeEEEEEEecCCCCCcEEEEEECCEECCCceEEeCCEEEEC---cCCh-------hhCEEEEEEEEeCCCcEE--EEEE
Confidence 4678999998888777 589998754432211 111111111 0111 134555666655555443 3344
Q ss_pred eEEecCccccCC
Q psy14765 255 LTVFDTELHTDD 266 (269)
Q Consensus 255 ~~~~~~~~~~~~ 266 (269)
+.+.++-++|||
T Consensus 300 l~V~~~PP~~~~ 311 (313)
T 4fqp_A 300 VQVKEGPPHHHH 311 (313)
T ss_dssp EEEECCC-----
T ss_pred EEEEeCCCCCcc
Confidence 566665566665
No 174
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=70.90 E-value=4.4 Score=27.55 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=23.1
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.++.+.|.|...+.+.+.+.|..+...+
T Consensus 21 ~G~~v~l~C~~~g~p~p~i~W~k~~~~~ 48 (114)
T 2cqv_A 21 AGESVELFGKVTGTQPITCTWMKFRKQI 48 (114)
T ss_dssp TTCCEEEEEEEESSSSCEEEEEESSSBC
T ss_pred CCCeEEEEEEEEcCCCCEEEEEECCEEC
Confidence 3688999999999999999999875443
No 175
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=70.76 E-value=2.1 Score=27.93 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=21.7
Q ss_pred CCCeeEEeeccccCCCccccceecc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINR 200 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~ 200 (269)
.+..+.|.|...+.+.+.+.|..+.
T Consensus 16 ~G~~~~l~C~~~g~P~p~i~W~k~~ 40 (93)
T 1wit_A 16 AGFTHNLEVDFIGAPDPTATWTVGD 40 (93)
T ss_dssp TTBCCEEEEEEECCSSCEEEEECST
T ss_pred CCCEEEEEEEEEEcCCCEEEEEECC
Confidence 3678899999999999999999875
No 176
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=70.14 E-value=6.4 Score=25.46 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=20.8
Q ss_pred CCeeEEeeccccCCCccccceeccccc
Q psy14765 177 GSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 177 l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
++.+.|.|.. ..+++.+.|+.+...+
T Consensus 11 G~~v~l~C~v-s~p~p~v~W~k~g~~l 36 (84)
T 2lu7_A 11 GGDLELVVHL-SGPGGPVRWYKDGERL 36 (84)
T ss_dssp TSCEEEECCC-SCCSTTCEEEETTEEC
T ss_pred CCCEEEEEEE-CCCCcEEEEEECCEEc
Confidence 6889999987 5588899999876544
No 177
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.01 E-value=4.2 Score=27.89 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=23.0
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.+..+.|.|...+.+.+.+.|..+...+
T Consensus 38 ~G~~~~l~C~~~g~P~p~i~W~k~g~~l 65 (118)
T 2e7c_A 38 VGEQLNLVVPFQGKPRPQVVWTKGGAPL 65 (118)
T ss_dssp SSSCEEEEEEEEEESCCEEEEEETTEEC
T ss_pred CCCEEEEEEEEccCCCCEEEEEECCEEC
Confidence 3688999999989999999999875544
No 178
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.55 E-value=5.4 Score=26.21 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=22.7
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.+..+.|.|...+.+.+.+.|..+...+
T Consensus 22 ~G~~~~l~C~~~g~p~p~v~W~~~~~~~ 49 (100)
T 2edj_A 22 VDGTALLKCKATGDPLPVISWLKEGFTF 49 (100)
T ss_dssp SSSEEEECCEEECSSCCEEEEEESSSEE
T ss_pred CCCcEEEEEEEEEcCCCEEEEEECCEEC
Confidence 3688999999988888999999875433
No 179
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.82 E-value=3.7 Score=26.98 Aligned_cols=28 Identities=29% Similarity=0.617 Sum_probs=22.8
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.+..+.|.|...+.+++.+.|..+...+
T Consensus 25 ~G~~v~l~C~~~g~p~p~v~W~~~g~~~ 52 (99)
T 2yr3_A 25 EGQDFVLQCSVRGTPVPRITWLLNGQPI 52 (99)
T ss_dssp TTCCEEEECEEEEESCCCCEEEESSSBC
T ss_pred CCCeEEEEEEEeeeCCCeEEEEECCEEC
Confidence 3688999999988889999999875443
No 180
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.35 E-value=9.1 Score=26.04 Aligned_cols=28 Identities=14% Similarity=0.379 Sum_probs=22.9
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.+..+.|.|...+.+.+.+.|..+...+
T Consensus 22 ~G~~v~l~C~~~g~p~p~i~W~k~g~~~ 49 (118)
T 2eo9_A 22 VDGTFVLSCVATGSPVPTILWRKDGVLV 49 (118)
T ss_dssp TTCEEEEECBCCCSSCCEEEEEESSSBC
T ss_pred CCCeEEEEEEEEecCCCEEEEEECCEEC
Confidence 3688999999988888999999875444
No 181
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=65.29 E-value=5.6 Score=27.31 Aligned_cols=27 Identities=22% Similarity=0.791 Sum_probs=22.4
Q ss_pred CCCeeEEeeccccCCCccccceecccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKI 202 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~ 202 (269)
.+..+.|.|...+.+.+.+.|..+...
T Consensus 29 ~G~~v~L~C~~~g~p~p~v~W~k~~~~ 55 (116)
T 2kkq_A 29 EGDSVKLECQISAIPPPKLFWKRNNEM 55 (116)
T ss_dssp TTEEEEEEEEBCCBSCCEEEEEETTEE
T ss_pred CCCcEEEEEEEeccCCCEEEEEECCEE
Confidence 368899999998888999999987543
No 182
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.12 E-value=16 Score=24.35 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=22.5
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.+..+.|.|...+.+.+.+.|..+...+
T Consensus 22 ~G~~v~l~C~~~g~p~p~v~W~k~g~~~ 49 (110)
T 2dm2_A 22 EGMPVTFTCRVAGNPKPKIYWFKDGKQI 49 (110)
T ss_dssp TTCCEEEEEEBCCSSCCEEEEECSSCBC
T ss_pred CCCeEEEEEEEEecCCCEEEEEECCEEC
Confidence 3688999999988888999999865433
No 183
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=63.48 E-value=6 Score=26.32 Aligned_cols=28 Identities=21% Similarity=0.579 Sum_probs=19.1
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.+..+.|.|...+.+.+.+.|..+...+
T Consensus 24 ~G~~v~l~C~~~g~p~p~i~W~~~~~~~ 51 (108)
T 3kvq_A 24 IGESIEVSCTASGNPPPQIMWFKDNETL 51 (108)
T ss_dssp TTCCEEEECBCC----CCEEEEESSSBC
T ss_pred CCCeEEEEEECcCcCCCeEEEEECCeEc
Confidence 3688999999988888999999865433
No 184
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=63.33 E-value=3.3 Score=27.86 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=21.9
Q ss_pred CCeeEEeeccccCCCccccceeccccc
Q psy14765 177 GSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 177 l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
...+.+.|...+.+.+.+.|..+...+
T Consensus 16 ~~~~~~~c~v~G~P~P~i~W~k~g~~l 42 (103)
T 1wwb_X 16 DHHWCIPFTVKGNPKPALQWFYNGAIL 42 (103)
T ss_dssp CCEEEEEEEEECSSCCEEEEEETTEEE
T ss_pred CcEEEEEEEEEEeCCCEEEEEECCEEC
Confidence 466788899999999999999875443
No 185
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=63.32 E-value=3.6 Score=29.80 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=22.1
Q ss_pred CCCeeEEeeccccCCCccccceecc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINR 200 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~ 200 (269)
.+..+.|.|...+.+.|.+.|..+.
T Consensus 32 ~G~~v~L~C~~~G~P~P~i~W~k~g 56 (139)
T 1gxe_A 32 AGNKLRLDVPISGDPAPTVIWQKAI 56 (139)
T ss_dssp SSSCCCCEEECCSBSCCEEEEEEEC
T ss_pred CCCeEEEEEEEEEcCCCeEEEEECC
Confidence 3688999999999999999999875
No 186
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=62.77 E-value=9.7 Score=30.29 Aligned_cols=83 Identities=27% Similarity=0.416 Sum_probs=39.6
Q ss_pred CCCeeEEeeccccCCCccccceecccccccccccCccccccc-cceeecCCCeeeeeeccceeeeecCCCcceeeecCce
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKE-ETVLSKDNSYLSVFSGGVDLAAASSPGGENIYDQKST 254 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ 254 (269)
.+..+.|.|...+.+++.+.|..+...+..- .+..... ........ ...-+++.|.|.+.+..+... ....
T Consensus 208 ~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~----~~~~~~~~~~~L~i~~--~~~~d~G~Y~C~a~N~~G~~~--~~~~ 279 (291)
T 2wim_A 208 RGEEMTFSCRASGSPEPAISWFRNGKLIEEN----EKYILKGSNTELTVRN--IINSDGGPYVCRATNKAGEDE--KQAF 279 (291)
T ss_dssp SCCEEEEECBCCCBSCCEEEEEETTEECCCT----TTEEECSTTCEEEEES--CCSTTCEEEEEEEEETTEEEE--EEEE
T ss_pred CCCeEEEEEEeecCCCCeEEEEECCEECcCC----ccEEEcCCccEEEEee--CCcccCEEEEEEEEECCCcee--eeEE
Confidence 4688999999988889999999875433211 0100000 00000000 001145566666666666655 4455
Q ss_pred eEEecCccccCC
Q psy14765 255 LTVFDTELHTDD 266 (269)
Q Consensus 255 ~~~~~~~~~~~~ 266 (269)
+.+.++..+|||
T Consensus 280 l~v~~~~~~~~~ 291 (291)
T 2wim_A 280 LQVFVQHHHHHH 291 (291)
T ss_dssp EEC---------
T ss_pred EEEEEeccccCC
Confidence 556666556654
No 187
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=61.69 E-value=3.5 Score=31.53 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=36.8
Q ss_pred CCeeEEeecc-ccCCCccccceecc-ccccc-cc-----ccCccccccccceeecCCCeeeeeeccceeeeecCCCccee
Q psy14765 177 GSNLTLDCRV-QSATPCRIMWSINR-KIYDH-VN-----WNSNKINIKEETVLSKDNSYLSVFSGGVDLAAASSPGGENI 248 (269)
Q Consensus 177 l~~l~l~~n~-~~~~~~~~~~~~~~-~~l~~-l~-----~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 248 (269)
+..+.|.|.. .+.+++.+.|..+. ..+.. .. ............-........+.|.+.|..+.......+.+
T Consensus 125 G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 204 (222)
T 4i0k_A 125 GNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTI 204 (222)
T ss_dssp CSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEEC
T ss_pred CceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEE
Confidence 6788999988 67788899998632 11111 00 00000000000111223344566666665555555555666
Q ss_pred eecCceeEEecCccccC
Q psy14765 249 YDQKSTLTVFDTELHTD 265 (269)
Q Consensus 249 ~~~~~~~~~~~~~~~~~ 265 (269)
.-+|..+..++...+||
T Consensus 205 ~~~p~~~~~~~~~~~~~ 221 (222)
T 4i0k_A 205 TGQPLTFPPETGHHHHH 221 (222)
T ss_dssp CC---------------
T ss_pred eCCccccCCccCccccC
Confidence 55555544444444443
No 188
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=59.67 E-value=6.9 Score=29.69 Aligned_cols=27 Identities=19% Similarity=0.450 Sum_probs=22.1
Q ss_pred CCeeEEeeccccCCCccccceeccccc
Q psy14765 177 GSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 177 l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
+..+.|.|...+.+++.+.|..+...+
T Consensus 125 g~~v~l~C~~~g~p~p~i~W~~~~~~~ 151 (212)
T 2yd1_A 125 GHTVLMTCKAIGNPTPNIYWIKNQTKV 151 (212)
T ss_dssp TCCEEECCEEECSSCCEEEEEETTEEC
T ss_pred CCeEEEEEEeccCCCCeEEEEECCeEc
Confidence 678999999988888899999875443
No 189
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.53 E-value=15 Score=24.41 Aligned_cols=25 Identities=24% Similarity=0.618 Sum_probs=20.7
Q ss_pred CCeeEEeeccccCCCccccceeccc
Q psy14765 177 GSNLTLDCRVQSATPCRIMWSINRK 201 (269)
Q Consensus 177 l~~l~l~~n~~~~~~~~~~~~~~~~ 201 (269)
+..+.|.|...+.+.+.+.|..+..
T Consensus 24 G~~v~l~C~~~g~p~p~v~W~~~g~ 48 (110)
T 2dm3_A 24 GKLCRMDCKVSGLPTPDLSWQLDGK 48 (110)
T ss_dssp SSCBCCEEEEECSSCCEEECBBSSS
T ss_pred CCEEEEEEEEEEcCCCEEEEEECCE
Confidence 6788899988888889999987654
No 190
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=57.30 E-value=5.1 Score=32.43 Aligned_cols=28 Identities=18% Similarity=0.426 Sum_probs=22.9
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.+..+.|.|...+.+++.+.|..+...+
T Consensus 219 ~G~~v~l~C~~~g~p~p~v~W~~~~~~l 246 (304)
T 2yd9_A 219 PGGNVNITCVAVGSPMPYVKWMQGAEDL 246 (304)
T ss_dssp TTCCEEEEEEEEEESCCEEEEEETTEEC
T ss_pred CCCeEEEEEEEeeeCCCEEEEEECCEEC
Confidence 3678999999988899999999875444
No 191
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=56.92 E-value=5.6 Score=26.02 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=21.5
Q ss_pred CCeeEEeeccccCCCccccceecccc
Q psy14765 177 GSNLTLDCRVQSATPCRIMWSINRKI 202 (269)
Q Consensus 177 l~~l~l~~n~~~~~~~~~~~~~~~~~ 202 (269)
+..+.|.|...+.+.+.+.|..+...
T Consensus 20 G~~~~l~C~~~g~p~p~v~W~~~g~~ 45 (100)
T 2kdg_A 20 GRFCRMDFKVSGLPAPDVSWYLNGRT 45 (100)
T ss_dssp TCCEEEEEECEEESCCEEEEEETTEE
T ss_pred CCEEEEEEEEEeeCCCEEEEEECCEE
Confidence 67889999988888899999986543
No 192
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=56.77 E-value=15 Score=27.24 Aligned_cols=25 Identities=20% Similarity=0.525 Sum_probs=20.6
Q ss_pred CCeeEEeeccccCCCccccceeccc
Q psy14765 177 GSNLTLDCRVQSATPCRIMWSINRK 201 (269)
Q Consensus 177 l~~l~l~~n~~~~~~~~~~~~~~~~ 201 (269)
...+.+.|...+.+++.+.|..+..
T Consensus 133 ~~~~~~~c~~~g~p~p~i~W~~~~~ 157 (218)
T 4frw_A 133 GLTLAASCTAEGSPAPSVTWDTEVK 157 (218)
T ss_dssp CSEEEEEEEEEEBSCCEEEEEESSC
T ss_pred ccccceeeeccCCcCceEEEEECCc
Confidence 5778888888889999999997643
No 193
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=56.11 E-value=7.8 Score=29.75 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=20.8
Q ss_pred CCCeeEEeeccccCCCccccceecc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINR 200 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~ 200 (269)
.+..+.|.|...+.|+|.+.|..+.
T Consensus 120 ~g~~~~l~C~~~G~P~P~v~W~~~~ 144 (203)
T 4fa8_A 120 DFSVLTVTCTVNAFPHPHVQWLMPE 144 (203)
T ss_dssp CSCCEEEEEEEEEESCCEEEECCC-
T ss_pred CCCEEEEEEEcCCCCCCEEEEEECC
Confidence 3678999999999999999998653
No 194
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=55.03 E-value=6 Score=28.68 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=22.6
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.+..+.|.|...+.+.+.+.|..+...+
T Consensus 55 ~G~~v~L~C~~~g~P~p~v~W~k~g~~~ 82 (154)
T 1fhg_A 55 EGSAARFDCKVEGYPDPEVMWFKDDNPV 82 (154)
T ss_dssp TTSCEEEEEEEEEESCCEEEEEETTEEC
T ss_pred CCCeEEEEEEEEEecCCEEEEEECCEEC
Confidence 3688999999988889999999875433
No 195
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=54.16 E-value=4.2 Score=27.86 Aligned_cols=74 Identities=9% Similarity=0.056 Sum_probs=38.7
Q ss_pred CeeEEeeccccCCCccccceecccccccccccCcccc-----------ccccceeecCCCeeeeeeccceeeeecCCCcc
Q psy14765 178 SNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKIN-----------IKEETVLSKDNSYLSVFSGGVDLAAASSPGGE 246 (269)
Q Consensus 178 ~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~-----------~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~ 246 (269)
....+.|...+.+.+.+.|..+...+..-. ...+. +... -........+.|.+.|..|.......+
T Consensus 21 ~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~--~~~~~~~~~~~~~~~~L~i~-~~~~~d~G~Y~C~a~N~~G~~~~~~~l 97 (118)
T 1wwc_A 21 LEHCIEFVVRGNPPPTLHWLHNGQPLRESK--IIHVEYYQEGEISEGCLLFN-KPTHYNNGNYTLIAKNPLGTANQTING 97 (118)
T ss_dssp CEEEEEEEEECSSCCEEEEEETTEECCCSS--SEEEEEEECSSEEEEEEEEE-SCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred cceEEEEEeeeeCCCeEEEEECCEECCCCC--ceeEEEeccCccccEEEEEC-CCChhcCEEEEEEEECCCCeEeeEEEE
Confidence 445667888888899999998754433211 00110 0000 112233455666666666666555554
Q ss_pred eeeecCce
Q psy14765 247 NIYDQKST 254 (269)
Q Consensus 247 ~~~~~~~~ 254 (269)
.+..+|..
T Consensus 98 ~v~~~P~~ 105 (118)
T 1wwc_A 98 HFLKEPFP 105 (118)
T ss_dssp CCSCCCCC
T ss_pred EEccCCCc
Confidence 44444433
No 196
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.74 E-value=18 Score=24.46 Aligned_cols=28 Identities=25% Similarity=0.553 Sum_probs=22.7
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.+..+.|.|...+.+.+.+.|..+...+
T Consensus 27 ~G~~v~l~C~~~g~p~p~v~W~k~g~~l 54 (115)
T 2cr6_A 27 EGSSATFRCRISPANYEPVHWFLDKTPL 54 (115)
T ss_dssp TTSCEECCCEEESTTCCSCEEEESSCEE
T ss_pred CCCcEEEEEEEcCCCCCccEEEECCEEC
Confidence 3688999999988888899999876433
No 197
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=53.07 E-value=23 Score=26.25 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=20.5
Q ss_pred CCCeeEEeeccccCCCccccceecccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIYD 204 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l~ 204 (269)
.+..+.|.|.. +++.+.|+.+...+.
T Consensus 121 ~G~~v~l~C~~---p~p~i~W~k~g~~i~ 146 (186)
T 1jbj_A 121 GDGSVLLTCGL---TDKTIKWLKDGSIIS 146 (186)
T ss_dssp SSCEEEEECSS---SCSCEEEEETTEECC
T ss_pred CCCeEEEEeeC---CCCeEEEEECCEECc
Confidence 36889999987 788999998765543
No 198
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=51.59 E-value=16 Score=27.89 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=18.2
Q ss_pred CCeeEEeecccc-CCCccccceec
Q psy14765 177 GSNLTLDCRVQS-ATPCRIMWSIN 199 (269)
Q Consensus 177 l~~l~l~~n~~~-~~~~~~~~~~~ 199 (269)
+..+.+.|...+ .+++.+.|..+
T Consensus 133 g~~v~l~c~~~g~~P~p~i~W~k~ 156 (226)
T 4f80_A 133 DGGIHLECRSTGWYPQPQIQWSNN 156 (226)
T ss_dssp TTEEEEEEEEEEEBSCCEEEEECT
T ss_pred CCceeeEEEeccCCCCCEEEEEEC
Confidence 577888888777 48889999864
No 199
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=50.88 E-value=11 Score=24.68 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=22.3
Q ss_pred CCCeeEEeeccccCCCccccceecccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKI 202 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~ 202 (269)
.+..+.|.|...+.+.+.+.|..+...
T Consensus 22 ~G~~v~l~C~~~g~p~p~i~W~k~~~~ 48 (103)
T 3qp3_A 22 CGQNTRFILNVQSKPTAEVKWYHNGVE 48 (103)
T ss_dssp TTCCEEEEEEEEEESCCEEEEEETTEE
T ss_pred CCCeEEEEEEEEecCCCEEEEEECCEE
Confidence 368899999998999999999986543
No 200
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=50.67 E-value=5.9 Score=35.02 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=16.8
Q ss_pred EEeeccccCCCccccceecccc
Q psy14765 181 TLDCRVQSATPCRIMWSINRKI 202 (269)
Q Consensus 181 ~l~~n~~~~~~~~~~~~~~~~~ 202 (269)
.|.|...+.+++.+.|..+...
T Consensus 425 ~l~C~~~g~P~p~i~W~~~~~~ 446 (524)
T 2ec8_A 425 MLQCVAAGFPEPTIDWYFCPGT 446 (524)
T ss_dssp CEEEEEEEESCCEEECCCC---
T ss_pred EEEEEEEeecCCEEEEEECCCc
Confidence 7888888899999999987443
No 201
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=50.30 E-value=19 Score=24.02 Aligned_cols=27 Identities=11% Similarity=0.401 Sum_probs=21.9
Q ss_pred CCCeeEEeeccccCCCccccceecccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKI 202 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~ 202 (269)
.+..+.|.|...+.+.+.+.|..+...
T Consensus 28 ~G~~v~L~C~~~g~p~p~v~W~k~g~~ 54 (106)
T 1nct_A 28 EGESARFSCDTDGEPVPTVTWLRKGQV 54 (106)
T ss_dssp SSSCEECCEEEECSSCCBCCBCSSSSC
T ss_pred CCCcEEEEEEEEEcCCCEEEEEECCEE
Confidence 368899999988888899999976543
No 202
>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.22 E-value=47 Score=21.20 Aligned_cols=27 Identities=30% Similarity=0.600 Sum_probs=22.1
Q ss_pred CCCeeEEeeccccCCCccccceecccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKI 202 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~ 202 (269)
.+..+.|.|...+.+.+.+.|..+...
T Consensus 24 ~G~~v~l~C~~~g~p~~~v~W~k~~~~ 50 (96)
T 2ens_A 24 PGGTVTLTCEVPAQPSPQIHWMKDGVP 50 (96)
T ss_dssp TTCEEEEECCCSSCSSCCCCCEESSSB
T ss_pred CCCeEEEEEEEccCCCCEEEEEECCEE
Confidence 368899999998888889999976443
No 203
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=49.82 E-value=12 Score=24.68 Aligned_cols=27 Identities=22% Similarity=0.525 Sum_probs=21.9
Q ss_pred CCCeeEEeeccccCCCccccceecccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKI 202 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~ 202 (269)
.+..+.|.|...+.+.+.+.|..+...
T Consensus 27 ~G~~v~l~C~~~g~p~p~i~W~~~~~~ 53 (107)
T 3irg_B 27 SGAEAELKCVVLGEPPPVVVWEKGGQQ 53 (107)
T ss_dssp TTSCEEEEEEEEEESCCEEEEEETTEE
T ss_pred CCCeEEEEEEEeecCCCEEEEEECCeE
Confidence 368899999998888889999986543
No 204
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=47.90 E-value=8.1 Score=25.23 Aligned_cols=28 Identities=14% Similarity=0.349 Sum_probs=22.4
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.+..+.|.|...+.+++.+.|..+...+
T Consensus 22 ~G~~v~l~C~~~g~p~p~v~W~~~~~~~ 49 (100)
T 3caf_A 22 AANTVKFRCPAGGNPMPTMRWLKNGKEF 49 (100)
T ss_dssp TTCCEEEECCEEEESCCEEEEEETTEEC
T ss_pred CCCEEEEEEEccccCCCEEEEEECCEEc
Confidence 3688999999888888999999765433
No 205
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.55 E-value=16 Score=23.84 Aligned_cols=27 Identities=30% Similarity=0.564 Sum_probs=20.5
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.+..+.|.|...+.+ +.+.|..+...+
T Consensus 17 ~G~~v~L~C~~~g~p-p~i~W~k~g~~~ 43 (99)
T 2cr3_A 17 PGDLLQLRCRLRDDV-QSINWLRDGVQL 43 (99)
T ss_dssp TTSCEEEECCCCSSC-CEEEEEESSSBC
T ss_pred CCCcEEEEEEecCCC-CeEEEEECCEEC
Confidence 368899999887764 689999875433
No 206
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=47.46 E-value=7.6 Score=25.29 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=22.0
Q ss_pred CCCeeEEeeccccCCCccccceecccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKI 202 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~ 202 (269)
.+..+.|.|...+.+.+.+.|..+...
T Consensus 19 ~G~~v~l~C~~~g~p~p~v~W~k~g~~ 45 (99)
T 1g1c_A 19 QGSDAHFRVRVVGKPDPECEWYKNGVK 45 (99)
T ss_dssp TTSCEEEEEEEEEESCCEEEEEETTEE
T ss_pred CCCcEEEEEEEEEeCCCEEEEEECCEE
Confidence 367899999988888999999976543
No 207
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=44.58 E-value=15 Score=27.40 Aligned_cols=76 Identities=16% Similarity=0.205 Sum_probs=40.5
Q ss_pred CCCeeEEeecc-ccCCCccccceecccccccc----cccCccccccccceeecCCCeeeeeeccceeeeecC-CCcceee
Q psy14765 176 PGSNLTLDCRV-QSATPCRIMWSINRKIYDHV----NWNSNKINIKEETVLSKDNSYLSVFSGGVDLAAASS-PGGENIY 249 (269)
Q Consensus 176 ~l~~l~l~~n~-~~~~~~~~~~~~~~~~l~~l----~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~-~~~~~~~ 249 (269)
.+..+.|.|.. .+.+++.+.|..+...+..- ...+..+.+. .........+.|.+.|..|.... ...+.+.
T Consensus 125 ~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~L~i~---~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~ 201 (212)
T 2v9r_A 125 VGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMIT---YTRKSDAGKYVCVGTNMVGERESEVAELTVL 201 (212)
T ss_dssp TTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEETTEEEES---SCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred CCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccCCeEEEe---eCCHhhCeeEEEEEecccCceecceEEEEEE
Confidence 36788999987 77888899999875443321 0111111111 11123345677777776666543 3556665
Q ss_pred ecCce
Q psy14765 250 DQKST 254 (269)
Q Consensus 250 ~~~~~ 254 (269)
.+|.+
T Consensus 202 ~~P~~ 206 (212)
T 2v9r_A 202 ERPSF 206 (212)
T ss_dssp C----
T ss_pred eCchH
Confidence 55544
No 208
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=44.29 E-value=17 Score=27.08 Aligned_cols=25 Identities=20% Similarity=0.518 Sum_probs=20.3
Q ss_pred cCCCeeEEeecc-ccCCCccccceec
Q psy14765 175 LPGSNLTLDCRV-QSATPCRIMWSIN 199 (269)
Q Consensus 175 ~~l~~l~l~~n~-~~~~~~~~~~~~~ 199 (269)
..+..+.|.|.. -+.+++.+.|...
T Consensus 134 ~~g~~v~l~C~~~~g~p~~~v~W~~~ 159 (214)
T 3jz7_A 134 EIGNDFKLKCEPKEGSLPLQFEWQKL 159 (214)
T ss_dssp BTTCCEEEEEECSBCCSSCEEEEEEC
T ss_pred ecCCcEEEEecCCCCCCCCEEEEEEC
Confidence 336789999998 6888889999974
No 209
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=44.23 E-value=16 Score=23.56 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=22.0
Q ss_pred CCCeeEEeeccccCCCccccceecccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKI 202 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~ 202 (269)
.+..+.|.|...+.+++.+.|..+...
T Consensus 19 ~G~~v~l~C~~~g~p~p~v~W~k~~~~ 45 (99)
T 1u2h_A 19 EGQDVIMSIRVQGEPKPVVSWLRNRQP 45 (99)
T ss_dssp TTCCEEEEEEEEEESCCEEEEEETTEE
T ss_pred CCCEEEEEEEEEEcCCCEEEEEECCEE
Confidence 368899999988888899999987543
No 210
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=44.15 E-value=11 Score=24.44 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=22.1
Q ss_pred CCeeEEeeccccCCCccccceeccccc
Q psy14765 177 GSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 177 l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
+..+.|.|...+.+.+.+.|..+...+
T Consensus 20 G~~~~l~C~~~g~p~p~v~W~~~~~~~ 46 (100)
T 3irg_A 20 GKVLTVACAFTGEPTPEVTWSCGGRKI 46 (100)
T ss_dssp TSEEEEEEEEEEESCCEEEEEETTEEC
T ss_pred CCcEEEEEEEEEcCCCceEEEECCEEe
Confidence 688999999888888999999865433
No 211
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}
Probab=44.07 E-value=19 Score=23.55 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=20.6
Q ss_pred CCCeeEEeeccccCCCccccceecc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINR 200 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~ 200 (269)
.++.+.|.|...+.+.+.+.|....
T Consensus 20 ~G~~v~L~C~~~~~~~~~v~W~~~~ 44 (108)
T 3m45_A 20 EGGTAILTCRVDQNDNTSLQWSNPA 44 (108)
T ss_dssp TTSCEEEEEEESSCSSCCEEEECTT
T ss_pred eCCcEEEEeEEcCCCccEEEEEcCC
Confidence 3688999999988888899998654
No 212
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=44.00 E-value=12 Score=28.72 Aligned_cols=28 Identities=21% Similarity=0.494 Sum_probs=22.9
Q ss_pred CCCeeEEeeccccC-CCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSA-TPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~-~~~~~~~~~~~~~l 203 (269)
.+..+.|.|...+. +++.+.|+.+...+
T Consensus 130 ~g~~v~l~C~v~g~~P~p~i~W~k~g~~l 158 (207)
T 3rbs_A 130 GECNVLLKCKVANIKKETHIVWYKDEREI 158 (207)
T ss_dssp TTTEEEEEEEEESCCTTCEEEEEETTEEE
T ss_pred CCCcEEEEEEEeCCCCCCEEEEEECCEEC
Confidence 36789999998888 88999999876544
No 213
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=42.92 E-value=12 Score=28.13 Aligned_cols=26 Identities=35% Similarity=0.652 Sum_probs=21.8
Q ss_pred CCeeEEeeccccCCCccccceecccc
Q psy14765 177 GSNLTLDCRVQSATPCRIMWSINRKI 202 (269)
Q Consensus 177 l~~l~l~~n~~~~~~~~~~~~~~~~~ 202 (269)
+..+.|.|...+.+++.+.|..+...
T Consensus 132 g~~~~l~C~~~g~p~p~v~W~~~~~~ 157 (212)
T 2r15_A 132 GKALNLTCNVWGDPPPEVSWLKNEKA 157 (212)
T ss_dssp TCCEEEEEEEECSSCCEEEEEETTEE
T ss_pred CCeEEEEEEEcCCCCceEEEEECCeE
Confidence 67899999998889999999987543
No 214
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=42.08 E-value=11 Score=25.75 Aligned_cols=25 Identities=20% Similarity=0.539 Sum_probs=19.2
Q ss_pred CCeeEEeecccc--CCCccccceeccc
Q psy14765 177 GSNLTLDCRVQS--ATPCRIMWSINRK 201 (269)
Q Consensus 177 l~~l~l~~n~~~--~~~~~~~~~~~~~ 201 (269)
++.+.|.|...+ .+++.+.|..+..
T Consensus 23 G~~v~L~C~~~g~p~~~~~i~W~~~~~ 49 (122)
T 3s35_X 23 GEKLVLNCTARTELNVGIDFNWEYPSS 49 (122)
T ss_dssp TCCEEEEEEEEECTTCCCEEEEECSCT
T ss_pred CCeEEEEEEEEcCCCCcEEEEEECCCc
Confidence 689999999877 4446779987654
No 215
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=41.97 E-value=30 Score=25.39 Aligned_cols=28 Identities=14% Similarity=0.400 Sum_probs=22.6
Q ss_pred CCeeEEeeccccCCCc-cccceecccccc
Q psy14765 177 GSNLTLDCRVQSATPC-RIMWSINRKIYD 204 (269)
Q Consensus 177 l~~l~l~~n~~~~~~~-~~~~~~~~~~l~ 204 (269)
+..+.|.|...+.+++ .+.|..+...+.
T Consensus 121 g~~~~l~C~~~g~p~p~~v~W~~~~~~~~ 149 (195)
T 2c5d_C 121 NTPFNLSCQAQGPPEPVDLLWLQDAVPLA 149 (195)
T ss_dssp TCCEEEEEEEECSSCCCEEEEEESSCBSS
T ss_pred CCEEEEEeECCCCCCCCEEEEEECCEecc
Confidence 6788999998888888 899998765443
No 216
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=41.57 E-value=27 Score=22.38 Aligned_cols=26 Identities=12% Similarity=0.548 Sum_probs=21.2
Q ss_pred CCCeeEEeeccccC-CCccccceeccc
Q psy14765 176 PGSNLTLDCRVQSA-TPCRIMWSINRK 201 (269)
Q Consensus 176 ~l~~l~l~~n~~~~-~~~~~~~~~~~~ 201 (269)
.+..+.|.|...+. +++.+.|..+..
T Consensus 15 ~G~~v~l~C~~~g~~p~~~v~W~~~~~ 41 (97)
T 2bk8_A 15 EGGHVKYVCKIENYDQSTQVTWYFGVR 41 (97)
T ss_dssp TTCCEEEEEEEESCCTTCEEEEEETTE
T ss_pred CCCcEEEEEEEeccCCCCEEEEEECCE
Confidence 36889999999886 888999998654
No 217
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=41.23 E-value=25 Score=27.31 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=45.3
Q ss_pred CCCeeEEeeccccCCCc--cccceecccccccccccCccccccccceeecCCCeeeeeeccceeeeecCCCcceeeecCc
Q psy14765 176 PGSNLTLDCRVQSATPC--RIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSGGVDLAAASSPGGENIYDQKS 253 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~--~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~ 253 (269)
.+..+.|.|.. +.+.+ .+.|......+...........+....+ .......+.|.+.|..+.....+.+.+|.+|.
T Consensus 21 ~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l~~~~~~~~~~~L~I~~v-~~~d~G~Y~C~a~n~~~~~~~~~~ltV~~~P~ 98 (210)
T 1gsm_A 21 LGASRQLTCRL-ACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNA-SLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPN 98 (210)
T ss_dssp TTCCEEEEEEE-CCSSTTCEEEEESSTTTTCCEEEESSEEEEEECSC-CGGGCEEEEEEEEETTEEEEEEEEEEEEBCCS
T ss_pred CCCCEEEEEEC-CCCCCCcceEEeecccccCcEEecCCccEEEECcc-CcccCceEEEEEEeCCCceEEEEEEEEEecCC
Confidence 37899999998 88777 8999863221211111111101111111 12234567777766555555567778888887
Q ss_pred eeEEe
Q psy14765 254 TLTVF 258 (269)
Q Consensus 254 ~~~~~ 258 (269)
.+.+.
T Consensus 99 ~~~i~ 103 (210)
T 1gsm_A 99 QLTVS 103 (210)
T ss_dssp EEEEE
T ss_pred CcEEc
Confidence 76654
No 218
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=40.97 E-value=14 Score=23.94 Aligned_cols=26 Identities=31% Similarity=0.585 Sum_probs=20.1
Q ss_pred CCCeeEEeeccccCCCccccceecccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKI 202 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~ 202 (269)
.+..+.|.|...+.+ +.+.|..+...
T Consensus 23 ~G~~v~l~C~~~g~p-p~i~W~k~g~~ 48 (95)
T 2ckn_A 23 PGDLLQLRCRLRDDV-QSINWLRDGVQ 48 (95)
T ss_dssp TTSCEEEECCEESSC-CEEEEEBTTBC
T ss_pred CCCeEEEEEECCCCC-CceEEEECCEe
Confidence 368899999987775 78999976543
No 219
>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}
Probab=40.75 E-value=14 Score=23.81 Aligned_cols=24 Identities=29% Similarity=0.725 Sum_probs=18.2
Q ss_pred CCCeeEEeeccccCCCccccceeccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRK 201 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~ 201 (269)
.+..+.|.|...+ ++.+.|..+..
T Consensus 15 ~G~~~~l~C~~~~--~p~v~W~k~g~ 38 (95)
T 4hwu_A 15 PGESLELQCMLKD--AAVISWTKDGV 38 (95)
T ss_dssp TTSCEEEECCCCT--TCEEEEEETTE
T ss_pred CCCEEEEEEEeCC--CCEEEEEECCE
Confidence 3688999998765 57889987643
No 220
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=39.28 E-value=23 Score=26.57 Aligned_cols=29 Identities=17% Similarity=0.394 Sum_probs=22.6
Q ss_pred CCCeeEEeecc-ccCCCccccceecccccc
Q psy14765 176 PGSNLTLDCRV-QSATPCRIMWSINRKIYD 204 (269)
Q Consensus 176 ~l~~l~l~~n~-~~~~~~~~~~~~~~~~l~ 204 (269)
.+..+.|.|.. .+.+++.+.|..+...+.
T Consensus 122 ~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~ 151 (217)
T 2vr9_A 122 KGETALLECGPPKGIPEPTLIWIKDGVPLD 151 (217)
T ss_dssp TTSCEEECCBCCCEESCCEEEEEETTEEEC
T ss_pred CCCeEEEEEECCCCCCCCeEEEEECCcCCC
Confidence 36789999988 778888999998765443
No 221
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=38.02 E-value=13 Score=33.28 Aligned_cols=78 Identities=18% Similarity=0.146 Sum_probs=43.8
Q ss_pred CCeeEEeeccccCCCccccceecccccccccc-cCccccccccceeecCCCeeeeeeccceeeeecCCCcceeeecCcee
Q psy14765 177 GSNLTLDCRVQSATPCRIMWSINRKIYDHVNW-NSNKINIKEETVLSKDNSYLSVFSGGVDLAAASSPGGENIYDQKSTL 255 (269)
Q Consensus 177 l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~-~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 255 (269)
+..+.|.|...+.+++.+.|..+...+..-.- ......+... -........+.|.+.|..|.......+.+..+|.+.
T Consensus 341 G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~-~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~ 419 (527)
T 3qs9_E 341 YEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKF-CNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVL 419 (527)
T ss_dssp TCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEE-CCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEEE
T ss_pred CCeEEEEEEEEecCCCEEEEEECCEECcCCcccccCCcEEEEe-cCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeEE
Confidence 57788999998999999999987654422110 0001011111 122344556677777766666666666666666553
No 222
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=37.05 E-value=46 Score=21.54 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=21.0
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.++.+.|.|.. ..+++.+.|+.+...+
T Consensus 20 ~g~~v~l~C~v-~~p~~~v~W~k~g~~i 46 (91)
T 2lvc_A 20 TSECVMLACEV-DREDAPVRWYKDGQEV 46 (91)
T ss_dssp TTCCEEEEEEC-SCTTSCCEEEETTSCC
T ss_pred CCCcEEEEEEE-CCCCcEEEEEECCEEe
Confidence 36889999986 5578899999876544
No 223
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=36.71 E-value=21 Score=28.15 Aligned_cols=28 Identities=7% Similarity=0.183 Sum_probs=22.0
Q ss_pred CCCeeEEeecccc-CCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQS-ATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~-~~~~~~~~~~~~~~l 203 (269)
.+..+.|.|...+ .+++.+.|..+...+
T Consensus 200 ~g~~~~l~C~~~~~~p~~~i~W~~~~~~~ 228 (289)
T 3ejj_X 200 RGEAAQIVCSATNAEVGFNVILKRGDTKL 228 (289)
T ss_dssp SSSCEEEEEEEEESSSCCEEEEEETTEEC
T ss_pred eCCcEEEEEEeCCCCCceEEEEEECCEEe
Confidence 4688999999887 678899999875433
No 224
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=36.12 E-value=7.6 Score=36.07 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=0.0
Q ss_pred CCeeEEeeccccCCCccccceecccccccc---ccc--CccccccccceeecCCCeeeeeeccceeeeecCCCcceeeec
Q psy14765 177 GSNLTLDCRVQSATPCRIMWSINRKIYDHV---NWN--SNKINIKEETVLSKDNSYLSVFSGGVDLAAASSPGGENIYDQ 251 (269)
Q Consensus 177 l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l---~~~--~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 251 (269)
++.+.|.|...+.+++.+.|..+...+..- ... +..+.+. -........+.|.+.|..|.......+.+.-+
T Consensus 681 g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~L~I~---~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~ 757 (772)
T 3v2a_R 681 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIR---RVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 757 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEEEEEEeCccCCCeEEEEECCeECcCCCCeEEcCCCcEEEEC---cCCHHHCEEEEEEEEeCCcceeEEEEEEEECC
Confidence 577889999988999999999876543321 111 1111111 12233456778888888888777777777655
Q ss_pred CceeE
Q psy14765 252 KSTLT 256 (269)
Q Consensus 252 ~~~~~ 256 (269)
|....
T Consensus 758 p~~~~ 762 (772)
T 3v2a_R 758 QEKTN 762 (772)
T ss_dssp -----
T ss_pred CCccc
Confidence 55433
No 225
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=36.00 E-value=22 Score=28.50 Aligned_cols=28 Identities=32% Similarity=0.599 Sum_probs=22.7
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.++.+.|.|...+.+++.+.|..+...+
T Consensus 236 ~g~~~~l~C~~~g~p~p~i~W~~~g~~~ 263 (317)
T 2y25_A 236 EGKALNLTCNVWGDPPPEVSWLKNEKAL 263 (317)
T ss_dssp TTSBBCEEEEEECSSCCEEEEEESSSEE
T ss_pred cCCEEEEEEEEecCCCCEEEEEECCEeC
Confidence 3678899999888899999999875443
No 226
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=35.22 E-value=22 Score=31.86 Aligned_cols=79 Identities=13% Similarity=0.273 Sum_probs=43.7
Q ss_pred CCCeeEEeeccccCCCccccceeccccccccc----ccCccc-cccccceeecCCCeeeeeeccceeeeecCCCcceeee
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIYDHVN----WNSNKI-NIKEETVLSKDNSYLSVFSGGVDLAAASSPGGENIYD 250 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~----~~~n~~-~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 250 (269)
.+..+.|.|...+.+++.+.|..+...+..-. ...+.. .+.... ........+.|.+.|..|.......+.+..
T Consensus 398 ~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~-v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~ 476 (570)
T 3b43_A 398 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILN-VDSADIGEYQCKASNDVGSDTCVGSITLKA 476 (570)
T ss_dssp TTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECS-CCGGGCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred CCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECC-CChhhCEEEEEEEEECCCeEEEEEEEEecc
Confidence 36789999999999999999998754432100 000100 011111 122334566777776666655555555555
Q ss_pred cCcee
Q psy14765 251 QKSTL 255 (269)
Q Consensus 251 ~~~~~ 255 (269)
||...
T Consensus 477 ~P~~~ 481 (570)
T 3b43_A 477 PPRFV 481 (570)
T ss_dssp CCEEE
T ss_pred CCccc
Confidence 55443
No 227
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Probab=35.17 E-value=23 Score=22.87 Aligned_cols=24 Identities=21% Similarity=0.674 Sum_probs=19.5
Q ss_pred CCCeeEEeeccc-cCCCccccceec
Q psy14765 176 PGSNLTLDCRVQ-SATPCRIMWSIN 199 (269)
Q Consensus 176 ~l~~l~l~~n~~-~~~~~~~~~~~~ 199 (269)
.+..+.|.|... +.+.+.+.|..+
T Consensus 24 ~G~~v~l~C~~~~~~p~~~v~W~k~ 48 (98)
T 1gl4_B 24 PGADVTFICTAKSKSPAYTLVWTRL 48 (98)
T ss_dssp TTCCEEEEEEEEESSSCCEEEEEEG
T ss_pred cCCCEEEEEeCCCCCCCcEEEEEeC
Confidence 368899999987 577889999875
No 228
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Probab=35.02 E-value=6.5 Score=27.07 Aligned_cols=27 Identities=26% Similarity=0.598 Sum_probs=21.7
Q ss_pred CCCeeEEeeccccCCCcc-ccceecccc
Q psy14765 176 PGSNLTLDCRVQSATPCR-IMWSINRKI 202 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~-~~~~~~~~~ 202 (269)
.+..+.|.|...+.+++. +.|..+...
T Consensus 27 ~G~~v~l~C~~~g~P~p~~i~W~~~~~~ 54 (122)
T 2cry_A 27 HGEKGQIKCFIRSTPPPDRIAWSWKENV 54 (122)
T ss_dssp TTSCCCCCEEECCSSCCSEEEEESSSCE
T ss_pred cCCCEEEEEEEeecCCCcEeEEEECCEE
Confidence 368889999999988887 999987543
No 229
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.55 E-value=27 Score=23.03 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=20.1
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.++.+.|.|.. .+.+.+.|+.+...+
T Consensus 21 ~G~~v~l~C~v--~p~p~v~W~k~g~~l 46 (100)
T 2yuz_A 21 LGKEICLKCEI--SENIPGKWTKNGLPV 46 (100)
T ss_dssp TTSCCCEEEEC--SSCCCEEEEETTEEC
T ss_pred CCCCEEEEEEe--CCCCeEEEEECCEEC
Confidence 36788899988 677889999876544
No 230
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=34.18 E-value=13 Score=31.33 Aligned_cols=28 Identities=11% Similarity=0.226 Sum_probs=23.0
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.+..+.|.|...+.+++.+.|+.+...+
T Consensus 309 ~g~~v~l~C~~~g~P~p~i~W~k~g~~l 336 (384)
T 3kld_A 309 MEESVFWECKANGRPKPTYRWLKNGDPL 336 (384)
T ss_dssp TTCCEEEECEEEEESCCEEEEEETTEEC
T ss_pred CCCCEEEEeECCccCCCeEEEEECCEEC
Confidence 3678899999999999999999876543
No 231
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=34.06 E-value=38 Score=24.42 Aligned_cols=27 Identities=15% Similarity=0.325 Sum_probs=21.9
Q ss_pred CCeeEEeeccccCCCc-cccceeccccc
Q psy14765 177 GSNLTLDCRVQSATPC-RIMWSINRKIY 203 (269)
Q Consensus 177 l~~l~l~~n~~~~~~~-~~~~~~~~~~l 203 (269)
+..+.|.|...+.+++ .+.|..+...+
T Consensus 113 g~~~~l~C~~~g~p~p~~v~W~~~~~~~ 140 (182)
T 1rhf_A 113 NAPFQLSCEAVGPPEPVTIVWWRGTTKI 140 (182)
T ss_dssp TCCEEEEEEEECSSSCCEEEEEETTEEC
T ss_pred CCEEEEEeEecCCCCCCEEEEEcCCeEC
Confidence 6788999998888888 89999875544
No 232
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=33.86 E-value=13 Score=29.23 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=22.0
Q ss_pred CCCeeEEeeccccCCCccccceeccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRK 201 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~ 201 (269)
.+..+.|.|...+.+++.+.|..+..
T Consensus 199 ~g~~~~l~C~~~g~P~p~i~W~~~~~ 224 (265)
T 2oz4_A 199 ENSQQTPMCQAWGNPLPELKCLKDGT 224 (265)
T ss_dssp TTCEECCCCCCEEESCCEEEEEETTT
T ss_pred CCCeEEEEeECccCCCCeEEEEECCc
Confidence 36888999999889999999998754
No 233
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=33.44 E-value=26 Score=25.57 Aligned_cols=26 Identities=15% Similarity=0.327 Sum_probs=20.9
Q ss_pred CCeeEEeeccccCCCccccceecccc
Q psy14765 177 GSNLTLDCRVQSATPCRIMWSINRKI 202 (269)
Q Consensus 177 l~~l~l~~n~~~~~~~~~~~~~~~~~ 202 (269)
+..+.|.|...+.+++.+.|..+...
T Consensus 115 g~~~~l~C~~~g~p~~~v~W~~~~~~ 140 (192)
T 2iep_A 115 GLKAVLPCTTMGNPKPSVSWIKGDSA 140 (192)
T ss_dssp TSCEEECCEEEEESCCEEEEEETTEE
T ss_pred CCcEEEEEEEeccCCceEEEEeCCEE
Confidence 57788999888888889999986543
No 234
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=33.41 E-value=23 Score=31.69 Aligned_cols=80 Identities=14% Similarity=0.189 Sum_probs=45.8
Q ss_pred CCCeeEEeeccccCCCccccceecccccccc-----cccCccccccccceeecCCCeeeeeeccceeeeecCCCcceeee
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIYDHV-----NWNSNKINIKEETVLSKDNSYLSVFSGGVDLAAASSPGGENIYD 250 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l-----~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 250 (269)
.+..+.|.|...+.+++.+.|..+...+..- ....+...+....+ .......+.|.+.|..|.......+.+..
T Consensus 211 ~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~ 289 (570)
T 3b43_A 211 LGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKV-TKGDAGQYTCYASNVAGKDSCSAQLGVQE 289 (570)
T ss_dssp SBSCEEEEEEEESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSB-CGGGCEEEEEEEEETTEEEEEEEEECCBC
T ss_pred CCCeEEEEEEEEECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEccc-CcccCEEEEEEEECCCCcEEEEEEEEeec
Confidence 3678899999988889999999875433210 00111111111111 22334567777777777666566666655
Q ss_pred cCceeE
Q psy14765 251 QKSTLT 256 (269)
Q Consensus 251 ~~~~~~ 256 (269)
+|....
T Consensus 290 ~p~~~~ 295 (570)
T 3b43_A 290 PPRFIK 295 (570)
T ss_dssp CCEEEE
T ss_pred CCcccc
Confidence 655443
No 235
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=32.98 E-value=27 Score=29.23 Aligned_cols=78 Identities=10% Similarity=0.132 Sum_probs=42.4
Q ss_pred CCCeeEEeeccccCCCccccceeccc-cccc-ccccCccccccccceeecCCCeeeeeeccceeeeecCCCcceeeecCc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRK-IYDH-VNWNSNKINIKEETVLSKDNSYLSVFSGGVDLAAASSPGGENIYDQKS 253 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~-~l~~-l~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~ 253 (269)
.+..+.|.|...+.+.+.+.|..... .+.. .......-.+....+ .......+.|.+.|..|.......+.+..+|.
T Consensus 219 ~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~ 297 (384)
T 3kld_A 219 KGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNF-QQEDAGSYECVAENSRGKNVAKGQLTFYAQPN 297 (384)
T ss_dssp TTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEECTTSCEEEECSC-CGGGCEEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred CCCcEEEEEEEeecCCCcEEEEeCCCccccccceecCCCcEEEECCC-ChhhCEEEEEEEEcCCCeEEEEEEEEEecCCc
Confidence 36889999999999999999986322 1111 000000001111111 22334567777777666665555555555554
Q ss_pred e
Q psy14765 254 T 254 (269)
Q Consensus 254 ~ 254 (269)
.
T Consensus 298 ~ 298 (384)
T 3kld_A 298 W 298 (384)
T ss_dssp E
T ss_pred c
Confidence 4
No 236
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=32.85 E-value=1.2e+02 Score=22.04 Aligned_cols=28 Identities=18% Similarity=0.453 Sum_probs=22.0
Q ss_pred CCCeeEEeecc-ccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRV-QSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~-~~~~~~~~~~~~~~~~l 203 (269)
.+..+.|.|.. .+.+++.+.|..+...+
T Consensus 121 ~g~~~~l~C~~~~~~p~~~v~W~~~~~~~ 149 (209)
T 1nbq_A 121 IGNRAVLTCSEQDGSPPSEYTWFKDGIVM 149 (209)
T ss_dssp TTSCEEECCCCCSCBSCCEEEEEETTCCC
T ss_pred cCCEEEEEEeCCCCCCCceeEEEECCeeC
Confidence 36789999995 78888899999875543
No 237
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=31.87 E-value=33 Score=21.91 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=21.0
Q ss_pred CCeeEEeeccccCCCccccceeccc
Q psy14765 177 GSNLTLDCRVQSATPCRIMWSINRK 201 (269)
Q Consensus 177 l~~l~l~~n~~~~~~~~~~~~~~~~ 201 (269)
+..+.|.|...+.+.+.+.|..+..
T Consensus 21 G~~~~l~C~~~g~p~p~v~W~~~g~ 45 (99)
T 3puc_A 21 DSVAKFAVKATGEPRPTAIWTKDGK 45 (99)
T ss_dssp SSCEEEEEEEEEESCCEEEEEETTE
T ss_pred CCcEEEEEEEEecCCCEEEEEECCE
Confidence 6789999998888889999997654
No 238
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=31.68 E-value=19 Score=27.50 Aligned_cols=22 Identities=32% Similarity=0.664 Sum_probs=19.6
Q ss_pred CCeeEEeeccccCCCcccccee
Q psy14765 177 GSNLTLDCRVQSATPCRIMWSI 198 (269)
Q Consensus 177 l~~l~l~~n~~~~~~~~~~~~~ 198 (269)
+..+.|.|...+.+++.+.|..
T Consensus 129 g~~v~L~C~~~~~p~p~v~W~~ 150 (241)
T 3grw_A 129 GSDVEFHCKVYSDAQPHIQWLK 150 (241)
T ss_dssp TCCEEEEEEEECSSCCEEEEEE
T ss_pred CCEEEEEEEEecCCCCEEEEEE
Confidence 6789999999888889999997
No 239
>2ljs_A Trypsin inhibitor 3; beta strand, helix, cyclic backbone, hydrolase inhibitor; HET: PCA; NMR {Momordica cochinchinensis}
Probab=31.01 E-value=11 Score=18.89 Aligned_cols=10 Identities=50% Similarity=1.328 Sum_probs=8.6
Q ss_pred CCCCCCCeEe
Q psy14765 21 ASCPLGCSCK 30 (269)
Q Consensus 21 ~~cp~~C~C~ 30 (269)
+.||..|.|.
T Consensus 15 sdcpgecic~ 24 (30)
T 2ljs_A 15 SDCPGECICK 24 (30)
T ss_dssp GGSSTTCCBC
T ss_pred cCCchhheec
Confidence 5899999996
No 240
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=29.66 E-value=21 Score=26.18 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=21.4
Q ss_pred CCCeeEEeeccccCCCccccceeccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRK 201 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~ 201 (269)
.+..+.|.|...+.+++.+.|..+..
T Consensus 127 ~g~~~~l~C~~~g~p~p~v~W~~~~~ 152 (201)
T 3s97_C 127 MGQNVTLECFALGNPVPDIRWRKVLE 152 (201)
T ss_dssp TTCCEEEEEEEEEESCCEEEEEETTB
T ss_pred cCCcEEEEEEccCCCCCceEEEeCCC
Confidence 36788999988888889999998654
No 241
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=29.09 E-value=48 Score=24.85 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=19.6
Q ss_pred CCCeeEEeeccccCCCcccccee
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSI 198 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~ 198 (269)
.+..+.|.|...+.+.+.+.|..
T Consensus 15 ~G~~v~L~C~~~g~P~p~i~W~~ 37 (202)
T 1vca_A 15 IGDSVSLTCSTTGCESPFFSWRT 37 (202)
T ss_dssp TTSCEEEEEEEESCSSCEEEEEE
T ss_pred CCCcEEEEEeecCCCCCeEEEEC
Confidence 47889999999888888899975
No 242
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=28.74 E-value=25 Score=26.46 Aligned_cols=28 Identities=18% Similarity=0.504 Sum_probs=23.1
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.++.+.|.|...+.+++.+.|..+...+
T Consensus 32 ~G~~v~l~C~~~g~p~p~i~W~~~g~~l 59 (215)
T 3mtr_A 32 EGNQVNITCEVFAYPSATISWFRDGQLL 59 (215)
T ss_dssp TTCCEEEEEEEEEESCCEEEEEETTEES
T ss_pred CCCCEEEEEEEeecCCCEEEEEECCeEC
Confidence 3688999999989999999999875443
No 243
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}
Probab=28.50 E-value=33 Score=23.40 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=20.7
Q ss_pred CCCeeEEeeccccCCCccccceecc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINR 200 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~ 200 (269)
.++.+.|.|...+.+.+.+.|....
T Consensus 15 ~G~~v~L~C~~~~~p~~~v~W~~~~ 39 (124)
T 3rbg_A 15 EGQTLTLKCVTSLRKNSSLQWLTPS 39 (124)
T ss_dssp TTSCEEEEEECCCCTTCEEEEECTT
T ss_pred CCCCEEEEeEEeccCCCEEEEECCC
Confidence 4788999999988888899998543
No 244
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=28.50 E-value=1.5e+02 Score=21.51 Aligned_cols=25 Identities=20% Similarity=0.492 Sum_probs=21.1
Q ss_pred CCeeEEeec-cccCCCccccceeccc
Q psy14765 177 GSNLTLDCR-VQSATPCRIMWSINRK 201 (269)
Q Consensus 177 l~~l~l~~n-~~~~~~~~~~~~~~~~ 201 (269)
+..+.|.|. ..+.+++.+.|..+..
T Consensus 119 g~~~~l~C~~~~~~p~~~i~W~~~~~ 144 (212)
T 1f97_A 119 GNRAVLTCSEHDGSPPSEYSWFKDGI 144 (212)
T ss_dssp TSCEEEEEECSCCBSCCEEEEEETTE
T ss_pred CCeEEEEEEcccCcCCCEEEEEeCCc
Confidence 688999999 6788889999998764
No 245
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=28.43 E-value=41 Score=26.46 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=21.6
Q ss_pred cCCCeeEEeeccccCCCccccceecc
Q psy14765 175 LPGSNLTLDCRVQSATPCRIMWSINR 200 (269)
Q Consensus 175 ~~l~~l~l~~n~~~~~~~~~~~~~~~ 200 (269)
..+..+.|.|...+.+++.+.|..+.
T Consensus 194 ~~G~~v~L~C~~~g~p~p~v~W~~~~ 219 (289)
T 3mjg_X 194 RQGENITLMCIVIGNEVVNFEWTYPR 219 (289)
T ss_dssp ETTSCEEEEEEEESCSSBEEEEECTT
T ss_pred EcCCCEEEEEEECCCCCcceEEEcCC
Confidence 34788999999989889999999643
No 246
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=28.38 E-value=53 Score=23.87 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=20.0
Q ss_pred CCCeeEEeeccccCCCcccccee
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSI 198 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~ 198 (269)
.+..+.|.|...+.+++.+.|..
T Consensus 106 ~g~~v~l~C~~~g~p~p~i~W~~ 128 (190)
T 2wv3_A 106 EGQDAMMYCKSVGYPHPEWMWRK 128 (190)
T ss_dssp TTSCEEEEEEEECSSCCEEEEEE
T ss_pred CCCcEEEEEEeCccCCCceEEEE
Confidence 36889999998888899999997
No 247
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=28.27 E-value=53 Score=20.68 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=21.7
Q ss_pred CCCeeEEeeccccCCCccccceeccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRK 201 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~ 201 (269)
.+..+.|.|...+.+++.+.|..+..
T Consensus 17 ~G~~~~l~C~~~g~p~p~i~W~~~~~ 42 (91)
T 3bfo_A 17 PGSTLVLQCVAVGSPIPHYQWFKNEL 42 (91)
T ss_dssp TTSCEEEECEEECSSCCEEEEEETTE
T ss_pred CCCcEEEEEEeccCCCCEEEEEcCCe
Confidence 36889999998888899999998643
No 248
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=28.02 E-value=45 Score=24.27 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=20.9
Q ss_pred CCeeEEeeccccCCC--ccccceeccccc
Q psy14765 177 GSNLTLDCRVQSATP--CRIMWSINRKIY 203 (269)
Q Consensus 177 l~~l~l~~n~~~~~~--~~~~~~~~~~~l 203 (269)
+..+.|.|...+.+. +.+.|..+...+
T Consensus 18 G~~v~l~C~~~~~~~~~~~v~W~~~~~~~ 46 (190)
T 2wv3_A 18 LLPVTLQCNLTSSSHTLMYSYWTKNGVEL 46 (190)
T ss_dssp SSCEEEEEEEEECSSCEEEEEEEETTEEC
T ss_pred CceEEEEEEeccCCCCceEEEEEECCEEC
Confidence 688999998877766 788999875443
No 249
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=27.18 E-value=38 Score=26.57 Aligned_cols=27 Identities=26% Similarity=0.635 Sum_probs=22.0
Q ss_pred CCCeeEEeeccccCCCccccceecccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKI 202 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~ 202 (269)
.++.+.|.|...+.+++.+.|..+...
T Consensus 19 ~G~~v~l~C~~~g~p~~~v~W~~~~~~ 45 (284)
T 2rik_A 19 LGESGTFKCHVTGTAPIKITWAKDNRE 45 (284)
T ss_dssp TTCCEEEEEEEESSSCCEEEEEETTEE
T ss_pred CCCcEEEEEEEEcCCCCEEEEEECCEE
Confidence 368899999988888889999987543
No 250
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=26.64 E-value=58 Score=23.46 Aligned_cols=29 Identities=17% Similarity=0.373 Sum_probs=21.4
Q ss_pred CCCeeEEeeccccCCCc--cccceecccccc
Q psy14765 176 PGSNLTLDCRVQSATPC--RIMWSINRKIYD 204 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~--~~~~~~~~~~l~ 204 (269)
.++.+.|.|...+.+++ .+.|..+...+.
T Consensus 12 ~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~ 42 (184)
T 3b5h_A 12 LGSKILLTCSLNDSATEVTGHRWLKGGVVLK 42 (184)
T ss_dssp ETTEEEEEEEEESCSSCCCEEEEESSSEEEE
T ss_pred cCCCEEEEEECCCCCCCceEEEEEeCCEEee
Confidence 36889999987776666 789998754443
No 251
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=25.70 E-value=51 Score=23.99 Aligned_cols=27 Identities=11% Similarity=0.298 Sum_probs=21.7
Q ss_pred CCeeEEeeccccCCCccccceeccccc
Q psy14765 177 GSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 177 l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
+..+.|.|...+.+++.+.|..+...+
T Consensus 119 g~~~~l~C~~~g~p~p~i~W~~~~~~~ 145 (197)
T 2j8h_A 119 GEVVSIKIPFSGKPDPVITWQKGQDLI 145 (197)
T ss_dssp TCCCEEEEEEEEESCCEEEEEESSCEE
T ss_pred CCEEEEEEEEEecCCCcEEEEECCEEe
Confidence 577889998888888999999875433
No 252
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=25.26 E-value=1.1e+02 Score=22.60 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=22.2
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.++.+.|.|...+.+.+.+.|..+...+
T Consensus 23 ~G~~v~L~C~~~g~p~~~v~W~~~g~~~ 50 (217)
T 2vr9_A 23 KNEPATLNCKVEGKPEPTIEWFKDGEPV 50 (217)
T ss_dssp TTSCEEECCEEECSSCCEEEEEETTEEC
T ss_pred CCCcEEEEEEcCCCCCCeEEEEECCcCc
Confidence 3688999999888788899999865443
No 253
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=24.91 E-value=29 Score=28.82 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=22.6
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.++.+.|.|...+.+++.+.|..+...+
T Consensus 321 ~g~~~~l~C~~~g~p~p~i~W~~~g~~i 348 (388)
T 2v5m_A 321 FGRPAVFTCQYTGNPIKTVSWMKDGKAI 348 (388)
T ss_dssp TTSCEEEEEEEEEECCCEEEEEETTEEC
T ss_pred CCCCEEEEEEeccccCCeEEEEECCEEC
Confidence 3678999999988889999999875433
No 254
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=24.69 E-value=89 Score=22.44 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=21.5
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.+..+.|.|...+.+++.+.|..+...+
T Consensus 110 ~g~~~~l~C~~~g~p~p~v~W~~~~~~~ 137 (189)
T 2v44_A 110 QGEDAEVVCRVSSSPAPAVSWLYHNEEV 137 (189)
T ss_dssp TTSCEEECCEEECSSCCEEEEEEEC--C
T ss_pred CCCCEEEEEEECcCCCCcEEEEECCcEE
Confidence 3678999999888888999999875433
No 255
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=24.64 E-value=75 Score=20.48 Aligned_cols=26 Identities=23% Similarity=0.520 Sum_probs=20.1
Q ss_pred CCCeeEEeeccccCCCccccceecccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKI 202 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~ 202 (269)
.+..+.|.|...+ +++.+.|+.+...
T Consensus 21 ~G~~v~l~C~~~~-~~~~v~W~k~g~~ 46 (103)
T 1x44_A 21 CGERVELECEVSE-DDANVKWFKNGEE 46 (103)
T ss_dssp TTEEEEEEEECSS-SSCCCEEEETTEE
T ss_pred CCCCEEEEEEecC-CCCeEEEEECCEE
Confidence 3678899999865 6789999987543
No 256
>1h9h_I EETI-II, trypsin inhibitor II; hydrolase inhibitor, complex (serine protease/inhibitor), squash inhibitor, cystine knot, hydrolase; 1.5A {Ecballium elaterium} SCOP: g.3.2.1 PDB: 1mcv_I
Probab=24.39 E-value=24 Score=18.69 Aligned_cols=11 Identities=36% Similarity=0.972 Sum_probs=9.3
Q ss_pred CCCCCCCeEee
Q psy14765 21 ASCPLGCSCKW 31 (269)
Q Consensus 21 ~~cp~~C~C~~ 31 (269)
+.|+..|.|..
T Consensus 13 sDCl~~CvC~~ 23 (36)
T 1h9h_I 13 SDCLAGCVCGP 23 (36)
T ss_dssp GGSCTTCEECT
T ss_pred cCccccCeEcc
Confidence 58999999973
No 257
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=24.39 E-value=27 Score=29.82 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=22.1
Q ss_pred CCCeeEEeeccccCCCccccceeccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRK 201 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~ 201 (269)
.+..+.|.|...+.+++.+.|..+..
T Consensus 384 ~g~~~~l~C~~~g~P~p~i~W~~~g~ 409 (450)
T 1z7z_I 384 ENSQQTPMCQAWGNPLPELKCLKDGT 409 (450)
T ss_dssp TTCEECCCCCCEEESCCEEEEEETTT
T ss_pred CCCeEEEEEecccCCCCcEEEEECCc
Confidence 36788999999999999999998654
No 258
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=24.01 E-value=37 Score=30.78 Aligned_cols=29 Identities=21% Similarity=0.478 Sum_probs=23.9
Q ss_pred cCCCeeEEeeccccCCCccccceeccccc
Q psy14765 175 LPGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 175 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
..++.+.+.|...+.++|.+.|..+...+
T Consensus 495 ~~G~~~~~~~~v~g~P~P~v~W~k~~~el 523 (573)
T 3uto_A 495 GEGQSANFYCRVIASSPPVVTWHKDDREL 523 (573)
T ss_dssp CTTSCEEEEEEEECSSCCEEEEEETTEEC
T ss_pred eCCCcEEEEEEEEccCCCeEEEEECCEEc
Confidence 34688999999999999999999875433
No 259
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.77 E-value=1.1e+02 Score=19.47 Aligned_cols=26 Identities=12% Similarity=0.298 Sum_probs=20.3
Q ss_pred CCCeeEEeeccccCCCccccceecccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKI 202 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~ 202 (269)
.++.+.|.|...+.+.+ +.|..+...
T Consensus 24 ~G~~v~l~C~~~~~p~~-v~W~k~g~~ 49 (104)
T 2e6p_A 24 TSERVVLTCELSRVDFP-ATWYKDGQK 49 (104)
T ss_dssp SSSCEECCEECSSTTCC-CEEEETTEE
T ss_pred CCCcEEEEEEecCCCCc-cEEeeCCEE
Confidence 36889999998777777 999976543
No 260
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=22.69 E-value=39 Score=26.58 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=23.3
Q ss_pred cCCCeeEEeeccccCCCccccceeccccc
Q psy14765 175 LPGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 175 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
..+..+.|.|...+.+++.+.|..+...+
T Consensus 209 ~~g~~v~l~C~~~g~p~p~i~W~~~g~~~ 237 (291)
T 1qz1_A 209 NLGQSVTLVCDADGFPEPTMSWTKDGEPI 237 (291)
T ss_dssp TSCCCEEEEEEEEEESCCEEEEEETTEEC
T ss_pred ccCceEEEEEEEEEeCCCcEEEEECCEEC
Confidence 34688999999988889999999875543
No 261
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.77 E-value=79 Score=21.86 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=18.3
Q ss_pred CCCeeEEeeccccC---CCccccceec
Q psy14765 176 PGSNLTLDCRVQSA---TPCRIMWSIN 199 (269)
Q Consensus 176 ~l~~l~l~~n~~~~---~~~~~~~~~~ 199 (269)
.++.+.|.|..-+. +.+.+.|+.+
T Consensus 26 eG~~v~L~C~v~g~~~~p~P~V~W~Kg 52 (118)
T 2edn_A 26 TGKDAVVVAKVNGKELPDKPTIKWFKG 52 (118)
T ss_dssp TTSCEECCEEEETTTSSSCCCCEEEET
T ss_pred CCCCEEEEEEEeccCCCCCCcEEEeeC
Confidence 36788888877654 6789999875
No 262
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.50 E-value=98 Score=19.78 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=20.4
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.+..+.|.|...+.+ +.+.|+.+...+
T Consensus 22 ~G~~v~l~C~~~~~~-~~v~W~k~g~~i 48 (101)
T 2edk_A 22 VGDRVEMAVEVSEEG-AQVMWMKNGVEL 48 (101)
T ss_dssp SSCCCBCCEEESCSS-CCCEEEESSCBC
T ss_pred CCCCEEEEEEEeCCC-CEEEEEECCEEC
Confidence 367888899887766 889999875433
No 263
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=21.28 E-value=1.2e+02 Score=21.25 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=18.4
Q ss_pred CCCeeEEeeccccC---CCccccceec
Q psy14765 176 PGSNLTLDCRVQSA---TPCRIMWSIN 199 (269)
Q Consensus 176 ~l~~l~l~~n~~~~---~~~~~~~~~~ 199 (269)
.++.+.|.|..-+. +.+.+.|+.+
T Consensus 21 eG~~v~L~C~v~g~~~~p~P~V~W~Kg 47 (126)
T 2dav_A 21 VGEDITFIAKVKAEDLLRKPTIKWFKG 47 (126)
T ss_dssp TTCCEEEEEEEECCCSSSCCEEEEEES
T ss_pred CCCCEEEEEEEeccCCCCCCcEEEeeC
Confidence 36788888877554 7889999875
No 264
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=21.12 E-value=75 Score=24.73 Aligned_cols=27 Identities=22% Similarity=0.763 Sum_probs=22.2
Q ss_pred CCCeeEEeeccccCCCccccceecccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKI 202 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~ 202 (269)
.+..+.|.|...+.+++.+.|..+...
T Consensus 206 ~g~~v~l~C~~~g~p~~~v~W~~~~~~ 232 (284)
T 2rik_A 206 KGADVHLECELQGTPPFQVSWHKDKRE 232 (284)
T ss_dssp TTCCEEEEEECBSSSCCEEEEEETTEE
T ss_pred CCCeEEEEEEEEecCCCEEEEEECCEE
Confidence 367899999998888899999986543
No 265
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=20.93 E-value=59 Score=27.87 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=22.4
Q ss_pred cCCCeeEEeeccccCCCccccceeccc
Q psy14765 175 LPGSNLTLDCRVQSATPCRIMWSINRK 201 (269)
Q Consensus 175 ~~l~~l~l~~n~~~~~~~~~~~~~~~~ 201 (269)
..++.+.|.|...+.+++.+.|+.+..
T Consensus 61 ~~G~~v~L~C~v~g~P~p~i~W~~~~~ 87 (423)
T 3qs7_E 61 DVSASITLQVLVDAPGNISCLWVFKHS 87 (423)
T ss_dssp CSSCCEEEEEECSCCSSCEEEEEETTE
T ss_pred ecCCcEEEEEEEEcCCCCeEEEEECCC
Confidence 447889999999998889999987653
No 266
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=20.85 E-value=64 Score=23.29 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.0
Q ss_pred CCCeeEEeeccccCCCccccceecc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINR 200 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~ 200 (269)
.+..+.|.|...+.+++.+.|..+.
T Consensus 111 ~g~~~~l~C~~~~~p~~~v~W~~~~ 135 (184)
T 2ny1_B 111 QGQSLTLTLESPPGSSPSVQCRSPR 135 (184)
T ss_dssp TTCCEEEEEECCTTCCCEEEEECTT
T ss_pred cCCCEEEEEEcCCCCCCEEEEEeCC
Confidence 3688999999988889999998754
No 267
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=20.76 E-value=47 Score=24.27 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=19.7
Q ss_pred eeEEeeccccCCCccccceecccc
Q psy14765 179 NLTLDCRVQSATPCRIMWSINRKI 202 (269)
Q Consensus 179 ~l~l~~n~~~~~~~~~~~~~~~~~ 202 (269)
.+.|.|...+.+++.+.|..+...
T Consensus 112 ~v~L~C~~~g~p~p~i~W~~~g~~ 135 (176)
T 1hng_A 112 NATLTCEVLEGTDVELKLYQGKEH 135 (176)
T ss_dssp TTEEEEECSSCSSCEEEEEETTEE
T ss_pred cEEEEEEecCCCCcEEEEEECCEE
Confidence 478999888999999999986543
No 268
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=20.64 E-value=45 Score=27.62 Aligned_cols=29 Identities=28% Similarity=0.578 Sum_probs=23.2
Q ss_pred cCCCeeEEeeccccCCCccccceeccccc
Q psy14765 175 LPGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 175 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
..+..+.|.|...+.+++.+.|..+...+
T Consensus 322 ~~g~~~~l~C~~~g~p~p~v~W~~~g~~~ 350 (395)
T 1bih_A 322 KQGQDVTIPCKVTGLPAPNVVWSHNAKPL 350 (395)
T ss_dssp CTTSCEEEECEEEEESCCCCEEEETTEEC
T ss_pred cCCCeEEEEEEECcccCCeeEEEECCEEC
Confidence 34678999999988899999999875443
No 269
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=20.42 E-value=31 Score=30.81 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=13.8
Q ss_pred EEeeccccCCCccccceec
Q psy14765 181 TLDCRVQSATPCRIMWSIN 199 (269)
Q Consensus 181 ~l~~n~~~~~~~~~~~~~~ 199 (269)
.+.|...+.+++.+.|...
T Consensus 426 ~l~C~a~g~P~p~i~W~~~ 444 (527)
T 3qs9_E 426 QASCFSDGYPLPSWTWKKC 444 (527)
T ss_dssp ---EEEECSSCCEEEEECC
T ss_pred EEEEEEEEEcCCeEEEEEC
Confidence 4688888999999999864
No 270
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=20.35 E-value=33 Score=29.51 Aligned_cols=28 Identities=18% Similarity=0.438 Sum_probs=22.9
Q ss_pred CCCeeEEeeccccCCCccccceeccccc
Q psy14765 176 PGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
.++.+.|.|...+.+++.+.|..+...+
T Consensus 340 ~G~~v~l~C~~~g~P~p~i~W~k~g~~l 367 (423)
T 3qs7_E 340 QYEEFCFSVRFKAYPQIRCTWTFSRKSF 367 (423)
T ss_dssp TTCCCCEEEEEEEESCCEEEEEETTEEE
T ss_pred CCCeEEEEEEEEEcCCCeEEEEECCEEC
Confidence 3578889999999999999999875444
No 271
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=20.34 E-value=64 Score=26.68 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=23.1
Q ss_pred cCCCeeEEeeccccCCCccccceeccccc
Q psy14765 175 LPGSNLTLDCRVQSATPCRIMWSINRKIY 203 (269)
Q Consensus 175 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~l 203 (269)
..+..+.|.|...+.+++.+.|..+...+
T Consensus 235 ~~G~~v~l~C~~~g~p~~~v~W~~~~~~~ 263 (404)
T 3p3y_A 235 LRGMDLLLECIASGVPTPDIAWYKKGGDL 263 (404)
T ss_dssp ETTSCEEEECCBCCSSCCEEEEEETTBCC
T ss_pred ecCCCEEEEEEECCCCCCcEEEEECCEEC
Confidence 34678999999988888999999875433
No 272
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=20.19 E-value=97 Score=20.18 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=19.8
Q ss_pred CCCeeEEeeccccCCC---ccccceecc
Q psy14765 176 PGSNLTLDCRVQSATP---CRIMWSINR 200 (269)
Q Consensus 176 ~l~~l~l~~n~~~~~~---~~~~~~~~~ 200 (269)
.+..+.|.|...+.+. +.+.|..+.
T Consensus 18 ~G~~v~L~C~~~g~p~~~~p~v~W~k~~ 45 (108)
T 3cx2_A 18 VGGSITFSARVAGASLLKPPVVKWFKGK 45 (108)
T ss_dssp TTCCEEEEEEEECC-CCSCCEEEEEETT
T ss_pred CCCCEEEEEEECCCccCCCcEEEEccCC
Confidence 3688999999988877 889998753
No 273
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=20.11 E-value=48 Score=24.75 Aligned_cols=23 Identities=17% Similarity=0.549 Sum_probs=20.2
Q ss_pred CCeeEEeeccccCCCccccceec
Q psy14765 177 GSNLTLDCRVQSATPCRIMWSIN 199 (269)
Q Consensus 177 l~~l~l~~n~~~~~~~~~~~~~~ 199 (269)
+..+.|.|...+.+++.+.|..+
T Consensus 131 g~~v~L~C~~~g~P~p~i~W~~~ 153 (222)
T 3sbw_C 131 TSEHELTCQAEGYPKAEVIWTSS 153 (222)
T ss_dssp TTEEEEEEEEEEBSCCEEEEEET
T ss_pred CCcEEEEEEecCCCCCeEEEEEC
Confidence 67899999988888899999976
Done!