RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14765
(269 letters)
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 136 bits (344), Expect = 3e-38
Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 7/159 (4%)
Query: 14 LLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEI 73
L + + SCP C C + C + +P+ + T +LDLS NN++ L+ E
Sbjct: 3 LASGRSVVSCPANCLC----ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEW 58
Query: 74 FLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSI 131
+TN+ L L L F+ AF V N+ LDLS N L T+ + L+ +
Sbjct: 59 TPT-RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117
Query: 132 NLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
L +N I + +F+ ++ + +S QI E
Sbjct: 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156
Score = 66.0 bits (161), Expect = 1e-12
Identities = 36/183 (19%), Positives = 61/183 (33%), Gaps = 38/183 (20%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM---DELDLSD 113
+VL L +N+I V+ + F + +QKLYL + ++ + + LDLS
Sbjct: 115 EVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172
Query: 114 NLLSTVP--SLIYIPYLK--SINLAHNPI----------------NQISSYSFQSTP--- 150
N L +P L +P + L +NP+ S FQ
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCM 232
Query: 151 ------GIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYD 204
I +D NC + G LT+ C + ++ S + +
Sbjct: 233 HSKKLHNIFSLDFFNCSEYKES----AWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVL 288
Query: 205 HVN 207
Sbjct: 289 SQG 291
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 129 bits (325), Expect = 7e-35
Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 7/173 (4%)
Query: 1 MCHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLD 60
+ + + + AS +CP CSC + V C R +P+GI +T+ L+
Sbjct: 24 LTAQVWILCAAIAAAASAGPQNCPSVCSCSNQF--SKVVCTRRGLSEVPQGIPSNTRYLN 81
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
L NNI ++Q + F + +++ L L + + ++ AF G+ +++ L+L DN L+ +P
Sbjct: 82 LMENNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 121 S--LIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNC-QIHTIYSEAF 170
S Y+ L+ + L +NPI I SY+F P + +D+ ++ I AF
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192
Score = 92.9 bits (231), Expect = 9e-22
Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDDRAFRGVTNMDELDLSDNL 115
+ L L +N I + F + ++ +L L + KLE++ + AF G+ N+ L+L
Sbjct: 150 RELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207
Query: 116 LSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ +P+L + L+ + ++ N +I SF ++ + + N Q+ I AF
Sbjct: 208 IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262
Score = 78.2 bits (193), Expect = 1e-16
Identities = 38/207 (18%), Positives = 82/207 (39%), Gaps = 33/207 (15%)
Query: 44 NFYTIPEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102
N +P L + L++S N+ ++ F + ++++KL++ ++ ++ AF G
Sbjct: 207 NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL--SSLKKLWVMNSQVSLIERNAFDG 264
Query: 103 VTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPI--------------NQISSYSF 146
+ ++ EL+L+ N LS++P ++ + YL ++L HNP I + S
Sbjct: 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNST 324
Query: 147 Q----STPG------IRYIDMSN--CQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRI 194
P + +D ++ C I + + G L CR + +
Sbjct: 325 CCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRTPPMS--SV 382
Query: 195 MWSINRKIYDHVNWNSNKINIKEETVL 221
W + +I++ + L
Sbjct: 383 KWLLPNGTVLSHASRHPRISVLNDGTL 409
Score = 74.4 bits (183), Expect = 2e-15
Identities = 19/117 (16%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 57 QVLDLSSNN-INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
LDL + + + F G+ N++ L L C ++ + + + ++EL++S N
Sbjct: 174 MRLDLGELKKLEYISEGAFE--GLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNH 229
Query: 116 LSTVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ S + LK + + ++ ++ I +F + +++++ + ++ + F
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 126 bits (318), Expect = 7e-34
Identities = 53/170 (31%), Positives = 94/170 (55%), Gaps = 8/170 (4%)
Query: 5 FILSVFLLTLLASVTQA-SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSS 63
+LSV L+ +A A +CP CSC + V C+ +N +P+GI +T++L+L
Sbjct: 16 SLLSVLLMGCVAETGSAQTCPSVCSCSNQF--SKVICVRKNLREVPDGISTNTRLLNLHE 73
Query: 64 NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS-- 121
N I +++ F + +++ L L + + ++ AF G+ N++ L+L DN L+T+P+
Sbjct: 74 NQIQIIKVNSFKHL--RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA 131
Query: 122 LIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNC-QIHTIYSEAF 170
+Y+ LK + L +NPI I SY+F P +R +D+ ++ I AF
Sbjct: 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181
Score = 91.0 bits (226), Expect = 4e-21
Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDDRAFRGVTNMDELDLSDNL 115
+ L L +N I + F I ++++L L + +L ++ + AF G++N+ L+L+
Sbjct: 139 KELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196
Query: 116 LSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
L +P+L + L ++L+ N ++ I SFQ ++ + M QI I AF
Sbjct: 197 LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251
Score = 83.3 bits (206), Expect = 2e-18
Identities = 39/207 (18%), Positives = 81/207 (39%), Gaps = 32/207 (15%)
Query: 44 NFYTIPEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102
N IP L LDLS N+++ ++ F + ++QKL++ + +++ ++ AF
Sbjct: 196 NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL--MHLQKLWMIQSQIQVIERNAFDN 253
Query: 103 VTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP-------------INQISSYSFQ 147
+ ++ E++L+ N L+ +P ++ + +L+ I+L HNP I ++ +
Sbjct: 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTA 313
Query: 148 STPG-----------IRYIDMSN--CQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRI 194
I +D + C I + V G L CR ++ +
Sbjct: 314 CCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRASTSLT-SV 372
Query: 195 MWSINRKIYDHVNWNSNKINIKEETVL 221
W +I + + L
Sbjct: 373 SWITPNGTVMTHGAYKVRIAVLSDGTL 399
Score = 76.3 bits (188), Expect = 4e-16
Identities = 31/151 (20%), Positives = 64/151 (42%), Gaps = 25/151 (16%)
Query: 57 QVLDLSSNN-INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
+ LDL ++ + + F G++N++ L L C L + + +DELDLS N
Sbjct: 163 RRLDLGELKRLSYISEGAF--EGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNH 218
Query: 116 LSTVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
LS + S + +L+ + + + I I +F + + I++++ + + + F +
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278
Query: 174 VLPGSNLT--------LDCRVQSATPCRIMW 196
+L +C C I+W
Sbjct: 279 ----HHLERIHLHHNPWNCN------CDILW 299
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 117 bits (294), Expect = 3e-30
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
CP C C + R V C + F +PEGI +T++LDL N I L ++ F +
Sbjct: 2 GCPPRCECSAQD--RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASF--PH 57
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIN 139
+++L L + + V+ AF + N+ L L N L +P + L ++++ N I
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ Y FQ ++ +++ + + I AF
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAF 148
Score = 85.9 bits (213), Expect = 3e-19
Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LD+S N I +L +F + N++ L + L ++ RAF G+ ++++L L L
Sbjct: 107 TKLDISENKIVILLDYMF--QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164
Query: 117 STVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMS-NCQIHTIYSEAFYVM 173
+++P +L ++ L + L H IN I YSF+ ++ +++S + T+ Y +
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224
Query: 174 VL 175
L
Sbjct: 225 NL 226
Score = 78.6 bits (194), Expect = 8e-17
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 10/139 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VL++S L N+ L + C L V A R + + L+LS N +
Sbjct: 203 KVLEISHWPYLDTMTPNCLYG--LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260
Query: 117 STVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF---- 170
ST+ L + L+ I L + + Y+F+ +R +++S Q+ T+ F
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320
Query: 171 --YVMVLPGSNLTLDCRVQ 187
++L + L DCR+
Sbjct: 321 NLETLILDSNPLACDCRLL 339
Score = 77.8 bits (192), Expect = 1e-16
Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 28/140 (20%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT------------ 104
+ L L N+ + E + + L LR + + D +F+ +
Sbjct: 155 EQLTLEKCNLTSIPTEALSHL--HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Query: 105 ------------NMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPINQISSYSFQSTP 150
N+ L ++ L+ VP + ++ YL+ +NL++NPI+ I
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272
Query: 151 GIRYIDMSNCQIHTIYSEAF 170
++ I + Q+ + AF
Sbjct: 273 RLQEIQLVGGQLAVVEPYAF 292
Score = 70.1 bits (172), Expect = 6e-14
Identities = 26/209 (12%), Positives = 59/209 (28%), Gaps = 58/209 (27%)
Query: 53 DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
L+ L ++ N+ + + ++ L L + ++ + + E+ L
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHL--VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280
Query: 113 DNLLSTVPS--LIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMS------NCQI-- 162
L+ V + YL+ +N++ N + + F S + + + +C++
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLW 340
Query: 163 ---------------------------------------------HTIYSEAFYVMVLPG 177
+A V V G
Sbjct: 341 VFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEG 400
Query: 178 SNLTLDCRVQSATPCRIMW-SINRKIYDH 205
+ CR P I+W S + +
Sbjct: 401 HTVQFVCRADGDPPPAILWLSPRKHLVSA 429
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 112 bits (282), Expect = 2e-29
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 9/152 (5%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
CP C C R V+C D +P+ + DT +LDL +N I ++ F +
Sbjct: 23 PVCPFRCQC----HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK--NLK 76
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQ 140
N+ L L K+ + AF + ++ L LS N L +P + L+ + + N I +
Sbjct: 77 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHENEITK 135
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHT--IYSEAF 170
+ F + +++ + + I + AF
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Score = 83.1 bits (206), Expect = 1e-18
Identities = 23/117 (19%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE--FVDDRAFRGVTNMDELDLSDN 114
Q L + N I ++K +F G+ + + L L+ +++ AF+G+ + + ++D
Sbjct: 124 QELRVHENEITKVRKSVFN--GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181
Query: 115 LLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
++T+P + P L ++L N I ++ + S + + + +S I + + +
Sbjct: 182 NITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237
Score = 80.8 bits (200), Expect = 7e-18
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 11/133 (8%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
TIP+G+ L L N I + G+ N+ KL L + VD+ + ++
Sbjct: 185 TIPQGLPPSLTELHLDGNKITKVDAASLK--GLNNLAKLGLSFNSISAVDNGSLANTPHL 242
Query: 107 DELDLSDNLLSTVPS-LIYIPYLKSINLAHNPINQISSYSFQST------PGIRYIDMSN 159
EL L++N L VP L Y++ + L +N I+ I S F + + +
Sbjct: 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302
Query: 160 CQIHT--IYSEAF 170
+ I F
Sbjct: 303 NPVQYWEIQPSTF 315
Score = 42.3 bits (100), Expect = 8e-05
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGI----TNIQKLYLR--KCKLEFVDDRAFRGVTNMDELD 110
QV+ L +NNI+ + F G + + L + + FR V +
Sbjct: 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325
Query: 111 LSDN 114
L +
Sbjct: 326 LGNY 329
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 110 bits (278), Expect = 3e-29
Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 6/151 (3%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C K T C + +P GI +Q + L N I+ + F N+
Sbjct: 2 CPGACVCY-NEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASF--RACRNL 58
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL-LSTVPS--LIYIPYLKSINLAHNPIN 139
L+L L +D AF G+ +++LDLSDN L +V + L +++L +
Sbjct: 59 TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
++ F+ ++Y+ + + + + + F
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTF 149
Score = 83.1 bits (206), Expect = 6e-19
Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L + L +F + +Q LYL+ L+ + D FR + N+ L L N +
Sbjct: 108 HTLHLDRCGLQELGPGLFRGL--AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165
Query: 117 STVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
S+VP + + L + L N + + ++F+ + + + + + +EA
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221
Score = 69.6 bits (171), Expect = 4e-14
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L N I+ + + F G+ ++ +L L + ++ V AFR + + L L N L
Sbjct: 156 THLFLHGNRISSVPERAF--RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 117 STVPSLIY--IPYLKSINLAHNPIN 139
S +P+ + L+ + L NP
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWV 238
Score = 42.7 bits (101), Expect = 6e-05
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
L VP I + I L N I+ + + SF++ + + + + + I +
Sbjct: 15 TTSCPQQGLQAVPVGIP-AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73
Query: 168 EAFY 171
AF
Sbjct: 74 AAFT 77
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 111 bits (280), Expect = 4e-29
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 9/161 (5%)
Query: 12 LTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQK 71
L L A CP GC C R V+C D +P+ I DT +LDL +N+I+ L+K
Sbjct: 16 LDSLPPTYSAMCPFGCHCH----LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRK 71
Query: 72 EIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSI 131
+ F G+ ++ L L K+ + ++AF + + +L +S N L +P + L +
Sbjct: 72 DDFK--GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVEL 128
Query: 132 NLAHNPINQISSYSFQSTPGIRYIDMSNCQIH--TIYSEAF 170
+ N I ++ F + I+M + AF
Sbjct: 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169
Score = 81.6 bits (202), Expect = 4e-18
Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 11/136 (8%)
Query: 44 NFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
IP+ + L L N I ++ E L + + +L L ++ +++ + +
Sbjct: 183 KLTGIPKDLPETLNELHLDHNKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGSLSFL 240
Query: 104 TNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQST------PGIRYID 156
+ EL L +N LS VP+ + + L+ + L N I ++ F I
Sbjct: 241 PTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300
Query: 157 MSNCQI--HTIYSEAF 170
+ N + + F
Sbjct: 301 LFNNPVPYWEVQPATF 316
Score = 77.4 bits (191), Expect = 1e-16
Identities = 19/140 (13%), Positives = 52/140 (37%), Gaps = 10/140 (7%)
Query: 47 TIPEGI--DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104
G L L +S + + K++ + +L+L K++ ++ +
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLTGIPKDLP-----ETLNELHLDHNKIQAIELEDLLRYS 217
Query: 105 NMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQI 162
+ L L N + + SL ++P L+ ++L +N ++++ + ++ + + I
Sbjct: 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNI 276
Query: 163 HTIYSEAFYVMVLPGSNLTL 182
+ F +
Sbjct: 277 TKVGVNDFCPVGFGVKRAYY 296
Score = 69.3 bits (170), Expect = 8e-14
Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 13/115 (11%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L N I +++ + +++L+L KL V + + + L N +
Sbjct: 220 YRLGLGHNQIRMIENGSL--SFLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNI 276
Query: 117 STVPS--------LIYIPYLKSINLAHNPI--NQISSYSFQSTPGIRYIDMSNCQ 161
+ V + Y I+L +NP+ ++ +F+ I N +
Sbjct: 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 107 bits (269), Expect = 9e-28
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 10/152 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP CSC + C + ++P GI L+L SN + L +F +T +
Sbjct: 1 CPSRCSCS----GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFD--KLTQL 54
Query: 83 QKLYLRKCKLEFVD--DRAFRGVTNMDELDLSDNLLSTVPS-LIYIPYLKSINLAHNPIN 139
KL L L F ++ G T++ LDLS N + T+ S + + L+ ++ H+ +
Sbjct: 55 TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 114
Query: 140 QISSYS-FQSTPGIRYIDMSNCQIHTIYSEAF 170
Q+S +S F S + Y+D+S+ ++ F
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146
Score = 84.3 bits (209), Expect = 3e-19
Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 16/148 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRAFRGVTNMDELDLSDNL 115
LD+S + V IF G+++++ L + E F + N+ LDLS
Sbjct: 129 IYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186
Query: 116 LSTVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
L + + + L+ +N++HN + ++ ++ ++ +D S I T +
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246
Query: 174 VLPGSNLTL-----DCRVQSATPCRIMW 196
+ L L C C
Sbjct: 247 PSSLAFLNLTQNDFACT------CEHQS 268
Score = 75.4 bits (186), Expect = 4e-16
Identities = 17/117 (14%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN-L 115
+ LD +N+ + + + N+ L + + F G+++++ L ++ N
Sbjct: 104 EHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162
Query: 116 LSTVPS--LIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ L ++L+ + Q+S +F S ++ ++MS+ ++ + +
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 101 bits (253), Expect = 4e-26
Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
+CP C C+ TV+C ++ IPE I T L L++N VL+ + +
Sbjct: 3 LACPEKCRCEGT----TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFK-KLP 57
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPI 138
++K+ K+ +++ AF G + ++E+ L+ N L V ++ + LK++ L N I
Sbjct: 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117
Query: 139 NQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLT--------LDCRVQSAT 190
+ + SF +R + + + QI T+ AF + +L+ +C
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL----HSLSTLNLLANPFNCN----- 168
Query: 191 PCRIMW 196
C + W
Sbjct: 169 -CYLAW 173
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 105 bits (264), Expect = 6e-26
Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 6/152 (3%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
S C K +T C + IP + T+ L+ S N + +Q F ++
Sbjct: 2 TSSDQKCIEKEVN--KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRL--I 57
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPI 138
N+ L L +C++ ++ + F+ +D L L+ N L + +L LK + I
Sbjct: 58 NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117
Query: 139 NQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ I + + + + + I +I
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKG 149
Score = 82.4 bits (204), Expect = 5e-18
Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 6/137 (4%)
Query: 43 RNFYTIPEGIDLDT----QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR 98
+N I +G+ T + + + +F + +++ + L+K +
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272
Query: 99 AFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDM 157
F + + ELDL+ LS +PS + + LK + L+ N + S + P + ++ +
Sbjct: 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332
Query: 158 S-NCQIHTIYSEAFYVM 173
N + + + +
Sbjct: 333 KGNTKRLELGTGCLENL 349
Score = 82.4 bits (204), Expect = 5e-18
Identities = 25/134 (18%), Positives = 58/134 (43%), Gaps = 10/134 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
++LDL+ + V + Q + ++ L L L+ ++ F G+ + L+L N
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQ-NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461
Query: 117 STVP-----SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
SL + L+ + L+ ++ I ++F S + ++D+S+ ++ + EA
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521
Query: 172 VMVLPGSNLTLDCR 185
+ + L+
Sbjct: 522 HL----KGIYLNLA 531
Score = 78.1 bits (193), Expect = 2e-16
Identities = 22/112 (19%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ LDLS ++I ++++Q L L + + AF+ ++ LDL+ L
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412
Query: 117 STVPS---LIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + LK +NL+H+ ++ S F P ++++++
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464
Score = 74.7 bits (184), Expect = 2e-15
Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVTNMDELDLSDNL 115
+ L LS+N L + ++ L ++ K + + N+ ELDLS +
Sbjct: 304 KKLVLSANKFENLCQISASNF--PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361
Query: 116 LSTVP----SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ T L + +L+S+NL++N + + +F+ P + +D++ ++ +++
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420
Score = 68.9 bits (169), Expect = 2e-13
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 4/110 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQ-MGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
Q L+L N+ + + ++ L L C L +D AF + M+ +DLS N
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511
Query: 116 LSTVPSLIYIPYLKS--INLAHNPINQISSYSFQSTPGIRYIDMSNCQIH 163
L++ + +LK +NLA N I+ I R I++ +
Sbjct: 512 LTSSSIEA-LSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560
Score = 65.0 bits (159), Expect = 4e-12
Identities = 15/144 (10%), Positives = 43/144 (29%), Gaps = 28/144 (19%)
Query: 54 LDTQVLDLSSNNINVLQKEIFLQM-----------------------GITNIQKLYLRKC 90
L+L+ N+I ++ F I ++
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238
Query: 91 KLEFVDDRAFRGVTNMD--ELDLSDNLLSTVP--SLIYIPYLKSINLAHNPINQISSYSF 146
E + F G+ M ++L + + + L+ ++L ++++ S
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GL 297
Query: 147 QSTPGIRYIDMSNCQIHTIYSEAF 170
++ + +S + + +
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISA 321
Score = 62.7 bits (153), Expect = 2e-11
Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 7/113 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L I+ + ++ LYL + + + LD +N +
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQ--KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165
Query: 117 STVP--SLIYIPYLK--SINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + + S+NL N I I +F S + ++ Q +
Sbjct: 166 HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLV 217
Score = 60.8 bits (148), Expect = 8e-11
Identities = 23/120 (19%), Positives = 35/120 (29%), Gaps = 7/120 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VLD +N I+ L KE + L L + ++ AF L+
Sbjct: 156 KVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN 214
Query: 117 STVP----SLIYIPYLKSINLAHNPINQISSYSFQSTPG--IRYIDMSNCQIHTIYSEAF 170
V I L IS F+ + I++ I S F
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF 274
Score = 51.2 bits (123), Expect = 1e-07
Identities = 11/64 (17%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
+ + L+ +P + + + + N + I + +F + ++D++ CQI+ I+
Sbjct: 16 TYNCENLGLNEIPGTLP-NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74
Query: 168 EAFY 171
+ F
Sbjct: 75 DTFQ 78
Score = 50.0 bits (120), Expect = 3e-07
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 5/94 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+DLS N + E + L L + + ++ ++L N L
Sbjct: 503 NHVDLSHNRLTSSSIEALSHL---KGIYLNLASNHISIILPSLLPILSQQRTINLRQNPL 559
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTP 150
S I +L+ + ++ P
Sbjct: 560 DCTCSN--IYFLEWYKENMQKLEDTEDTLCENPP 591
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 102 bits (254), Expect = 2e-25
Identities = 31/201 (15%), Positives = 66/201 (32%), Gaps = 28/201 (13%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQV--LDLSSNN-INVLQKEIFLQMGI 79
CP C G + C + + L + + + L+ +
Sbjct: 1 CPDACCPH---GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGL-- 55
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP-SLIYIPYLKSINLAHNPI 138
++ L + K L FV AF + L+LS N L ++ + L+ + L+ NP+
Sbjct: 56 GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115
Query: 139 N-------------------QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSN 179
+ + ++ ++C + T+ + V G +
Sbjct: 116 HCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDD 175
Query: 180 LTLDCRVQSATPCRIMWSINR 200
+ L C+V+ + W +
Sbjct: 176 VLLRCQVEGRGLEQAGWILTE 196
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 97.3 bits (243), Expect = 3e-24
Identities = 40/185 (21%), Positives = 80/185 (43%), Gaps = 34/185 (18%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
T +C++ NFY IP+ + T+ LDLS N + L F +Q L
Sbjct: 5 EVV----PNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLD 58
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNPI------ 138
L +C+++ ++D A++ ++++ L L+ N + ++ + L+ + +
Sbjct: 59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118
Query: 139 ---------------NQISSY----SFQSTPGIRYIDMSNCQIHTIYSEAFYVMV-LPGS 178
N I S+ F + + ++D+S+ +I +IY V+ +P
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178
Query: 179 NLTLD 183
NL+LD
Sbjct: 179 NLSLD 183
Score = 50.4 bits (121), Expect = 1e-07
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 57 QVLDLSSNNINVLQKEIF--LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
+ LDLSSN I + L L L + F+ AF+ + EL L N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTN 210
Query: 115 LLSTVPSLIY--IPYLKSINLAHNP 137
L +VP I+ + L+ I L NP
Sbjct: 211 QLKSVPDGIFDRLTSLQKIWLHTNP 235
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 97.9 bits (244), Expect = 6e-24
Identities = 37/170 (21%), Positives = 70/170 (41%), Gaps = 9/170 (5%)
Query: 5 FILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSN 64
+++ V + + S ++S SC + + +IP G+ + LDLS+N
Sbjct: 6 WMVWVLGVIISLSKEESSNQASLSC---DRNGICKGSSGSLNSIPSGLTEAVKSLDLSNN 62
Query: 65 NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--L 122
I + N+Q L L + +++ +F + +++ LDLS N LS + S
Sbjct: 63 RITYISNSDLQ--RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWF 120
Query: 123 IYIPYLKSINLAHNPINQISSYS-FQSTPGIRYIDMSNC-QIHTIYSEAF 170
+ L +NL NP + S F ++ + + N I + F
Sbjct: 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170
Score = 70.5 bits (173), Expect = 3e-14
Identities = 18/124 (14%), Positives = 48/124 (38%), Gaps = 13/124 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L++ ++++ + + I N+ L L + + + ++++ L+L D L
Sbjct: 177 EELEIDASDLQSYEPKSL--KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234
Query: 117 STVP----------SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY 166
T SLI +++ + + Q+ G+ ++ S Q+ ++
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQLKSVP 293
Query: 167 SEAF 170
F
Sbjct: 294 DGIF 297
Score = 63.6 bits (155), Expect = 8e-12
Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 4/112 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDDRAFRGVTNMDELDLSDNL 115
L+L N L + +T +Q L + + + F G+T ++EL++ +
Sbjct: 127 TFLNLLGNPYKTLGETSLFS-HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185
Query: 116 LSTVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
L + SL I + + L + T + +++ + + T
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237
Score = 52.8 bits (127), Expect = 3e-08
Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 11/112 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK--------CKLEFVDDRAFRGVTNMDE 108
L L +L + ++++ L LR +L + +
Sbjct: 201 SHLILHMKQHILLLEIFVD--VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258
Query: 109 LDLSDNLLSTVPSLI-YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSN 159
+ ++D L V L+ I L + + N + + F ++ I +
Sbjct: 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310
Score = 44.7 bits (106), Expect = 1e-05
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 54 LDTQVLDLSSNNINVLQKEIFLQ-MGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
L+ + DL + + + L + + + + L F + ++ + EL+ S
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL-FQVMKLLNQISGLLELEFS 285
Query: 113 DNLLSTVPSLIY--IPYLKSINLAHNPIN 139
N L +VP I+ + L+ I L NP +
Sbjct: 286 RNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 99.0 bits (247), Expect = 1e-23
Identities = 29/145 (20%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
P T +C+D+ +P+ I T+ +DLS N + +L+ F + +
Sbjct: 5 NPCIEVVP----NITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNF--SEL 58
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPINQ 140
Q L L +C++E ++D+A+ G+ ++ L L+ N + + S + L+++ +
Sbjct: 59 QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTI 165
+ S+ ++ +++++ IH+
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSC 143
Score = 77.4 bits (191), Expect = 2e-16
Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 4/112 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LDLS N ++ + +G +++ L L + F G+ + LD + L
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA-NFMGLEELQHLDFQHSTL 411
Query: 117 STVPSLIYI---PYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
V L +++++ F + + M+
Sbjct: 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463
Score = 76.2 bits (188), Expect = 6e-16
Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 9/121 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L+ N I F + T+++ L + KL ++ + + +L+++ N +
Sbjct: 83 SNLILTGNPIQSFSPGSFSGL--TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140
Query: 117 STVPSLIYI---PYLKSINLAHNPINQISSYSFQS----TPGIRYIDMSNCQIHTIYSEA 169
+ Y L ++L++N I I+ Q +DMS I I +A
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200
Query: 170 F 170
F
Sbjct: 201 F 201
Score = 75.8 bits (187), Expect = 8e-16
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 5/120 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFVDDRAFRGVTNMDELDLSDNL 115
LD+S N + IFL + T++ L + + F TN+ LDLS
Sbjct: 427 LYLDISYTNTKIDFDGIFLGL--TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484
Query: 116 LSTVPSLI--YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
L + + + L+ +N++HN + + S + + +D S +I T +
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 544
Score = 74.3 bits (183), Expect = 3e-15
Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 3/111 (2%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L ++ N+ TN+ L L KC+LE + F + + L++S N L
Sbjct: 451 NTLKMAGNSFKDNTLSNVFA-NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509
Query: 117 STVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ S Y + L +++ + N I + + +++N + I
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560
Score = 72.4 bits (178), Expect = 1e-14
Identities = 19/117 (16%), Positives = 46/117 (39%), Gaps = 4/117 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q LD + + + + + + L + + D F G+T+++ L ++ N
Sbjct: 402 QHLDFQHSTLKRVTEFSAFL-SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460
Query: 117 STVP---SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
L ++L+ + QIS F + ++ ++MS+ + + S +
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517
Score = 69.7 bits (171), Expect = 9e-14
Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 10/116 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L+ +I L+ Q L + +C+L+ + + L L+ N
Sbjct: 288 SAMSLAGVSIKYLEDVPKH----FKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKG 340
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQ--STPGIRYIDMSNCQIHTIYSEAF 170
S + +P L ++L+ N ++ S+ T +R++D+S + S F
Sbjct: 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANF 395
Score = 67.7 bits (166), Expect = 5e-13
Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 7/124 (5%)
Query: 53 DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
D+ L+ N F + N+ + L +++++D L +
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKFHCL--ANVSAMSLAGVSIKYLEDVPKH--FKWQSLSII 315
Query: 113 DNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYV 172
L P+L +P+LKS+ L N + + + P + Y+D+S + ++
Sbjct: 316 RCQLKQFPTL-DLPFLKSLTLTMNKGSIS--FKKVALPSLSYLDLSRNALSFSGCCSYSD 372
Query: 173 MVLP 176
+
Sbjct: 373 LGTN 376
Score = 63.5 bits (155), Expect = 1e-11
Identities = 13/121 (10%), Positives = 38/121 (31%), Gaps = 9/121 (7%)
Query: 56 TQVLDLSSN------NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDEL 109
V L N+ + + I + I + L D F + N+ +
Sbjct: 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290
Query: 110 DLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
L+ + + + +S+++ + Q P ++ + ++ + + +
Sbjct: 291 SLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGSISFKKV 347
Query: 170 F 170
Sbjct: 348 A 348
Score = 63.1 bits (154), Expect = 1e-11
Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 10/115 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD-DRAFRGVTNMDELDLSDNL 115
+ L + L+ Q+ ++KL + + F +TN+ +DLS N
Sbjct: 107 ENLVAVETKLASLESFPIGQL--ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164
Query: 116 LSTVPSLI------YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHT 164
+ T+ S++++ NPI+ I +FQ + + + +
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSS 218
Score = 57.3 bits (139), Expect = 1e-09
Identities = 21/151 (13%), Positives = 39/151 (25%), Gaps = 38/151 (25%)
Query: 57 QVLDLSSNNINVLQKEIF--LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
+DLS N I + L+ L + ++F+ D+AF+G + EL L N
Sbjct: 156 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGN 214
Query: 115 LLSTVPSLIYIPYLKS-----------------------------------INLAHNPIN 139
S+ + L L +
Sbjct: 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF 274
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
F + + ++ I +
Sbjct: 275 SDDIVKFHCLANVSAMSLAGVSIKYLEDVPK 305
Score = 56.2 bits (136), Expect = 3e-09
Identities = 14/111 (12%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q+L++S NN+ L + Q+ ++ L ++E ++ +L++N +
Sbjct: 500 QLLNMSHNNLLFLDSSHYNQL--YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPG-----IRYIDMSNCQI 162
+ + +L+ + + + + + + + S C +
Sbjct: 558 ACICEH--QKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFNNSTCYM 606
Score = 52.0 bits (125), Expect = 7e-08
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 109 LDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
D LS VP I K+I+L+ NP+ + SYSF + ++++D+S C+I TI +
Sbjct: 16 YQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK 74
Query: 169 AFY 171
A++
Sbjct: 75 AWH 77
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 93.2 bits (232), Expect = 4e-23
Identities = 35/183 (19%), Positives = 72/183 (39%), Gaps = 20/183 (10%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
CP C+C V+C + IP + + L N I V+ F
Sbjct: 3 LHCPAACTCS----NNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAF--SPYK 56
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPI 138
++++ L ++ + AF+G+ +++ L L N ++ +P ++ + L+ + L N I
Sbjct: 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI 116
Query: 139 NQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTL-----DCRVQSATPCR 193
N + +FQ + + + + ++ TI F + + L C C
Sbjct: 117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR-AIQTMHLAQNPFICD------CH 169
Query: 194 IMW 196
+ W
Sbjct: 170 LKW 172
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 93.6 bits (233), Expect = 7e-22
Identities = 27/141 (19%), Positives = 66/141 (46%), Gaps = 6/141 (4%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C T +C++ NFY IP+ + T+ LDLS N + L F +Q L
Sbjct: 3 CVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSF--PELQVLD 58
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPINQISSY 144
L +C+++ ++D A++ ++++ L L+ N + ++ + L+ + + + ++
Sbjct: 59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118
Query: 145 SFQSTPGIRYIDMSNCQIHTI 165
++ +++++ I +
Sbjct: 119 PIGHLKTLKELNVAHNLIQSF 139
Score = 77.8 bits (192), Expect = 2e-16
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 8/139 (5%)
Query: 36 RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFV 95
+ +E ++ F P + L +SN E+ L +++ L L + L F
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL----PSLEFLDLSRNGLSFK 362
Query: 96 D--DRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYS-FQSTPG 151
++ G T++ LDLS N + T+ S + L+ ++ H+ + Q+S +S F S
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422
Query: 152 IRYIDMSNCQIHTIYSEAF 170
+ Y+D+S+ ++ F
Sbjct: 423 LIYLDISHTHTRVAFNGIF 441
Score = 77.1 bits (190), Expect = 3e-16
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L+ N I L F G++++QKL + L +++ + + EL+++ NL+
Sbjct: 79 STLILTGNPIQSLALGAFS--GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 117 STVP---SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRY----IDMSNCQIHTIYSEA 169
+ + L+ ++L+ N I I + + +D+S ++ I A
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 170 F 170
F
Sbjct: 197 F 197
Score = 73.6 bits (181), Expect = 5e-15
Identities = 18/117 (15%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ LD +N+ + + + N+ L + + F G+++++ L ++ N
Sbjct: 399 EHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 117 STVPS---LIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ L ++L+ + Q+S +F S ++ ++M++ Q+ ++ F
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514
Score = 73.2 bits (180), Expect = 7e-15
Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFVDDRAFRGVTNMDELDLSDNL 115
LD+S + V IF + ++++ L + E F + N+ LDLS
Sbjct: 424 IYLDISHTHTRVAFNGIFNGL--SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 116 LSTVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIH 163
L + + + L+ +N+A N + + F ++ I +
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
Score = 63.6 bits (155), Expect = 1e-11
Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
+ L S I ++ + Q L L CK + ++ L + N
Sbjct: 283 NVSSFSLVSVTIERVKDFSYN----FGWQHLELVNCKFGQFPTLKLK---SLKRLTFTSN 335
Query: 115 LLSTVPSLIYIPYLKSINLAHNPINQIS--SYSFQSTPGIRYIDMSNCQIHTIYSE 168
S + +P L+ ++L+ N ++ S S T ++Y+D+S + T+ S
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391
Score = 59.7 bits (145), Expect = 2e-10
Identities = 22/115 (19%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD-RAFRGVTNMDELDLSDNL 115
Q L N+ L+ + +++L + ++ F +TN++ LDLS N
Sbjct: 103 QKLVAVETNLASLENFPIGHL--KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 116 LSTVP--SLIYIPYLK----SINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHT 164
+ ++ L + + S++L+ NP+N I +F+ + + + N
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSL 214
Score = 52.0 bits (125), Expect = 6e-08
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LDLS + L F ++++Q L + +L+ V D F +T++ ++ L N
Sbjct: 473 TFLDLSQCQLEQLSPTAF--NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
Query: 117 STVPSLI 123
I
Sbjct: 531 DCSCPRI 537
Score = 50.9 bits (122), Expect = 2e-07
Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 15/124 (12%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF-VDDRAFRGVTNMDELDLSDNLLS 117
LDLS N +N +Q F ++ + KL LR V +G+ ++ L
Sbjct: 182 LDLSLNPMNFIQPGAFKEI---RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238
Query: 118 TVPSLIYIPY-----LKSINLAHNPINQISSYS------FQSTPGIRYIDMSNCQIHTIY 166
+L L ++ + + + Y F + + + I +
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298
Query: 167 SEAF 170
++
Sbjct: 299 DFSY 302
Score = 45.9 bits (109), Expect = 7e-06
Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 14/131 (10%)
Query: 47 TIPEGI--DLDTQVLDLSSNNINV-LQKEIFLQMGITNIQKLYLRK----CKLEFVDDRA 99
I G ++ L L +N ++ + K + + +L L + LE D A
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250
Query: 100 FRGVTNMDELDLSDNLLSTVPSLIY-----IPYLKSINLAHNPINQISSYSFQSTPGIRY 154
G+ N+ + L I + + S +L I ++ +S+ G ++
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--GWQH 308
Query: 155 IDMSNCQIHTI 165
+++ NC+
Sbjct: 309 LELVNCKFGQF 319
Score = 45.9 bits (109), Expect = 8e-06
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 110 DLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
+ +P + K+++L+ NP+ + SYSF S P ++ +D+S C+I TI A
Sbjct: 13 QCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71
Query: 170 FY 171
+
Sbjct: 72 YQ 73
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 91.4 bits (227), Expect = 1e-21
Identities = 30/154 (19%), Positives = 59/154 (38%), Gaps = 12/154 (7%)
Query: 23 CPLG-CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
C C C R C + IP + + L + V+QK F G +
Sbjct: 2 CHHRICHCS----NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAF--SGFGD 55
Query: 82 IQKLYLRKCK-LEFVDDRAFRGVTNMDELDLSD-NLLSTVPS--LIYIPYLKSINLAHNP 137
++K+ + + LE ++ F + + E+ + N L + +P L+ + +++
Sbjct: 56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115
Query: 138 INQISSYSFQSTPGIRYIDMS-NCQIHTIYSEAF 170
I + + +D+ N IHTI +F
Sbjct: 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149
Score = 61.4 bits (149), Expect = 4e-11
Identities = 19/118 (16%), Positives = 45/118 (38%), Gaps = 6/118 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVT-NMDELDLSDN 114
Q L +S+ I L + L ++ + ++ +F G++ L L+ N
Sbjct: 107 QYLLISNTGIKHLPDVHKIHS--LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164
Query: 115 LLSTVPSLI--YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ + + + +N + ++ + F G +D+S +IH++ S
Sbjct: 165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222
Score = 53.7 bits (129), Expect = 2e-08
Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 10/112 (8%)
Query: 51 GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110
G+ ++ +L L+ N I + F G + LE + + F G + LD
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAF--NGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208
Query: 111 LSDNLLSTVPS--LIYIPYLKSINLAHNPINQISSY-SFQSTPGIRYIDMSN 159
+S + ++PS L + L++ + + + + + ++
Sbjct: 209 ISRTRIHSLPSYGLENLKKLRARST-----YNLKKLPTLEKLVALMEASLTY 255
Score = 51.8 bits (124), Expect = 6e-08
Identities = 11/81 (13%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Query: 56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
++ +NN+ L ++F G + L + + ++ + + +
Sbjct: 180 DELNLSDNNNLEELPNDVF--HGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YN 235
Query: 116 LSTVPSLIYIPYLKSINLAHN 136
L +P+L + L +L +
Sbjct: 236 LKKLPTLEKLVALMEASLTYP 256
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 90.9 bits (226), Expect = 6e-21
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
SC + R+F +IP G+ + LDLS N I + N+Q L
Sbjct: 2 LSC---DASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRAC--ANLQVLI 56
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPINQIS-S 143
L+ ++ ++ AF + +++ LDLSDN LS++ S + LK +NL NP + +
Sbjct: 57 LKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116
Query: 144 YSFQSTPGIRYIDMSNC-QIHTIYSEAF 170
F + ++ + + N I F
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDF 144
Score = 70.5 bits (173), Expect = 5e-14
Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 11/122 (9%)
Query: 44 NFYTIPEGIDLDT--QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101
F+ +P+ + L+LSS I V++ I ++ L + L+
Sbjct: 398 TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP-----QTLEVLDVSNNNLDSFS----L 448
Query: 102 GVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQ 161
+ + EL +S N L T+P P L + ++ N + + F ++ I +
Sbjct: 449 FLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508
Query: 162 IH 163
Sbjct: 509 WD 510
Score = 68.6 bits (168), Expect = 2e-13
Identities = 20/114 (17%), Positives = 45/114 (39%), Gaps = 10/114 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LD+S N + + ++ L L + V + + LD+S+N L
Sbjct: 390 TSLDISRNTFHPMPDSCQ---WPEKMRFLNLSSTGIRVVKTCIPQTLE---VLDVSNNNL 443
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ ++P L+ + ++ N + + S P + + +S Q+ ++ F
Sbjct: 444 DSFSL--FLPRLQELYISRNKLKTLPDASLF--PVLLVMKISRNQLKSVPDGIF 493
Score = 66.7 bits (163), Expect = 1e-12
Identities = 22/114 (19%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q L LS N++ +QK + + + N+ L + + + D + + M L+LS +
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SCQWPEKMRFLNLSSTGI 422
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
V + I L+ +++++N ++ S P ++ + +S ++ T+ +
Sbjct: 423 RVVKTCI-PQTLEVLDVSNNNLDSFSL----FLPRLQELYISRNKLKTLPDASL 471
Score = 66.3 bits (162), Expect = 1e-12
Identities = 16/121 (13%), Positives = 49/121 (40%), Gaps = 10/121 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE---FVDDRAFRGVTNMDELDLSD 113
+ + + ++ + ++ + +++ L L + + + ++ L LS
Sbjct: 313 KRITVENSKVFLVPCSFSQHL--KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370
Query: 114 NLLSTVPSLIYI----PYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
N L ++ I L S++++ N + + S Q +R++++S+ I + +
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTCI 429
Query: 170 F 170
Sbjct: 430 P 430
Score = 55.5 bits (134), Expect = 5e-09
Identities = 14/109 (12%), Positives = 38/109 (34%), Gaps = 4/109 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L++ + ++ Q + I +I L L + F+ + ++++ L+L D L
Sbjct: 151 NELEIKALSLRNYQSQSL--KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208
Query: 117 STVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIH 163
+ L + + ++ SF + + ++
Sbjct: 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257
Score = 52.4 bits (126), Expect = 5e-08
Identities = 16/116 (13%), Positives = 37/116 (31%), Gaps = 4/116 (3%)
Query: 53 DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
D L I L + F + + + + V + + L +
Sbjct: 237 DESFNELLKLLRYILELSEVEFDDCTLNGL--GDFNPSESDVVSELGKVETVTIRRLHIP 294
Query: 113 DNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY 166
L S +Y + +K I + ++ + + Q + ++D+S + Y
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350
Score = 47.4 bits (113), Expect = 2e-06
Identities = 12/112 (10%), Positives = 42/112 (37%), Gaps = 6/112 (5%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
+ + +VL E F + + + L ++EF D + + + + S++ + +
Sbjct: 225 MKKLAFRGSVLTDESF--NELLKLLRYILELSEVEFDDCT----LNGLGDFNPSESDVVS 278
Query: 119 VPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ ++ +++ + S + ++ I + N ++ +
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 88.2 bits (219), Expect = 9e-21
Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 9/149 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
C + V C RN +P + DT +L LS N + M T +
Sbjct: 4 CEVSKVAS----HLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRL 57
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI-YIPYLKSINLAHNPINQI 141
+L L + +L + + + LDLS N L ++P L +P L ++++ N + +
Sbjct: 58 TQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 142 SSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ + ++ + + ++ T+
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLL 144
Score = 53.6 bits (129), Expect = 1e-08
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q L L N + L + ++KL L L + G+ N+D L L +N L
Sbjct: 127 QELYLKGNELKTLPPGLL--TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Query: 117 STVPSLIY-IPYLKSINLAHNP 137
T+P + L L NP
Sbjct: 185 YTIPKGFFGSHLLPFAFLHGNP 206
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 87.7 bits (218), Expect = 1e-20
Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 19 TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMG 78
CSC K +V+C + IP I DT+ LDL SN ++ L + F
Sbjct: 4 LCKKDGGVCSCN--NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAF--HR 59
Query: 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHN 136
+T ++ LYL KL+ + F+ + N++ L ++DN L +P + + L + L N
Sbjct: 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119
Query: 137 PINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ + F S + Y+ + ++ ++ F
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153
Score = 63.1 bits (154), Expect = 7e-12
Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 36 RTVECIDRNFYTIPEGI--DL-DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL 92
T+ D +P G+ L + L L N + L +F +T + L L +L
Sbjct: 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSLTKLTYLSLGYNEL 145
Query: 93 EFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTP 150
+ + F +T++ EL L +N L VP + + LK++ L +N + ++ +F S
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205
Query: 151 GIRYIDMSN 159
++ + +
Sbjct: 206 KLKMLQLQE 214
Score = 36.1 bits (84), Expect = 0.008
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
+ L L +N + + + F +T ++ L L +L+ V + AF + + L L +N
Sbjct: 160 KELRLYNNQLKRVPEGAF--DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 88.9 bits (221), Expect = 3e-20
Identities = 27/141 (19%), Positives = 67/141 (47%), Gaps = 6/141 (4%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C T +C++ NFY IP+ + T+ LDLS N + L F +Q L
Sbjct: 3 CVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSF--PELQVLD 58
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPINQISSY 144
L +C+++ ++D A++ ++++ L L+ N + ++ + + L+ + + + ++
Sbjct: 59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118
Query: 145 SFQSTPGIRYIDMSNCQIHTI 165
++ +++++ I +
Sbjct: 119 PIGHLKTLKELNVAHNLIQSF 139
Score = 72.8 bits (179), Expect = 9e-15
Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFVDDRAFRGVTNMDELDLSDNL 115
LD+S + V IF G+++++ L + E F + N+ LDLS
Sbjct: 424 IYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 116 LSTVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
L + + + L+ +N++HN + ++ ++ ++ +D S I T +
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
Score = 68.9 bits (169), Expect = 2e-13
Identities = 19/118 (16%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 57 QVLDLSSNNINVL-QKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN- 114
+ LD +N+ + + +FL + N+ L + + F G+++++ L ++ N
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSL--RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 115 LLSTVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ L ++L+ + Q+S +F S ++ ++MS+ ++ + +
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514
Score = 68.5 bits (168), Expect = 2e-13
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 44 NFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD--DRAFR 101
F P + L +SN E+ L +++ L L + L F ++
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL----PSLEFLDLSRNGLSFKGCCSQSDF 370
Query: 102 GVTNMDELDLSDNLLSTVP-SLIYIPYLKSINLAHNPINQISSYS-FQSTPGIRYIDMSN 159
G T++ LDLS N + T+ + + + L+ ++ H+ + Q+S +S F S + Y+D+S+
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430
Query: 160 CQIHTIYSEAF 170
++ F
Sbjct: 431 THTRVAFNGIF 441
Score = 68.1 bits (167), Expect = 3e-13
Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L+ N I L F + +++QKL + L +++ + + EL+++ NL+
Sbjct: 79 STLILTGNPIQSLALGAFSGL--SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 117 STVPSLIYI---PYLKSINLAHNPINQISSYSFQSTPGIRY----IDMSNCQIHTIYSEA 169
+ Y L+ ++L+ N I I + + +D+S ++ I A
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 170 F 170
F
Sbjct: 197 F 197
Score = 65.4 bits (160), Expect = 3e-12
Identities = 19/106 (17%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VL ++ N+ + N+ L L +C+LE + AF ++++ L++S N
Sbjct: 448 EVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Query: 117 STVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPG-IRYIDMSN 159
++ + L+ ++ + N I Q P + +++++
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552
Score = 64.7 bits (158), Expect = 5e-12
Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 9/111 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L S I ++ + Q L L CK + ++ L + N
Sbjct: 285 SSFSLVSVTIERVKDFSYN----FGWQHLELVNCKFGQFPTLKLK---SLKRLTFTSNKG 337
Query: 117 STVPSLIYIPYLKSINLAHNPIN--QISSYSFQSTPGIRYIDMSNCQIHTI 165
S + +P L+ ++L+ N ++ S S T ++Y+D+S + T+
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388
Score = 57.7 bits (140), Expect = 1e-09
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LDLS + L F ++++Q L + +D ++ + ++ LD S N +
Sbjct: 473 TFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
Query: 117 STVP--SLIYIPY-LKSINLAHNPI 138
T L + P L +NL N
Sbjct: 531 MTSKKQELQHFPSSLAFLNLTQNDF 555
Score = 57.3 bits (139), Expect = 1e-09
Identities = 22/113 (19%), Positives = 48/113 (42%), Gaps = 10/113 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD-DRAFRGVTNMDELDLSDNL 115
Q L N+ L+ + +++L + ++ F +TN++ LDLS N
Sbjct: 103 QKLVAVETNLASLENFPIGHL--KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 116 LSTVP--SLIYIPYLK----SINLAHNPINQISSYSFQSTPGIRYIDMSNCQI 162
+ ++ L + + S++L+ NP+N I +F+ + + + N
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFD 212
Score = 52.3 bits (126), Expect = 5e-08
Identities = 23/139 (16%), Positives = 50/139 (35%), Gaps = 14/139 (10%)
Query: 44 NFYTIPEGI--DLDTQVLDLSSNNINV-LQKEIFLQMGITNIQKLYLRK----CKLEFVD 96
I G ++ L L +N ++ + K + + +L L + LE D
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247
Query: 97 DRAFRGVTNMDELDLSDNLLSTVPSLI-----YIPYLKSINLAHNPINQISSYSFQSTPG 151
A G+ N+ + L I + + S +L I ++ +S+ G
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--G 305
Query: 152 IRYIDMSNCQIHTIYSEAF 170
+++++ NC+ +
Sbjct: 306 WQHLELVNCKFGQFPTLKL 324
Score = 50.4 bits (121), Expect = 2e-07
Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 15/124 (12%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF-VDDRAFRGVTNMDELDLSDNLLS 117
LDLS N +N +Q F ++ + KL LR V +G+ ++ L
Sbjct: 182 LDLSLNPMNFIQPGAFKEI---RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238
Query: 118 TVPSLIYIPY-----LKSINLAHNPINQISSY------SFQSTPGIRYIDMSNCQIHTIY 166
+L L ++ + + + Y F + + + I +
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298
Query: 167 SEAF 170
++
Sbjct: 299 DFSY 302
Score = 49.6 bits (119), Expect = 4e-07
Identities = 16/122 (13%), Positives = 39/122 (31%), Gaps = 10/122 (8%)
Query: 56 TQVLDLSSNNINVLQKEIFLQMG-ITNIQKLYLRKCKLEFVDD------RAFRGVTNMDE 108
+V L + + L + + +L ++D F +TN+
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286
Query: 109 LDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
L + V Y + + L + Q + +S ++ + ++ + +SE
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGGNAFSE 343
Query: 169 AF 170
Sbjct: 344 VD 345
Score = 45.4 bits (108), Expect = 1e-05
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
+ +P + K+++L+ NP+ + SYSF S P ++ +D+S C+I TI
Sbjct: 11 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69
Query: 168 EAFY 171
A+
Sbjct: 70 GAYQ 73
Score = 45.4 bits (108), Expect = 1e-05
Identities = 17/110 (15%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV-TNMDELDLSDNL 115
QVL++S NN L + + ++Q L + + + +++ L+L+ N
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCL--NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 554
Query: 116 LS-TVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMS-NCQIH 163
+ T ++ ++K + ++ + G+ + ++ CQ++
Sbjct: 555 FACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNITCQMN 604
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 87.0 bits (216), Expect = 1e-19
Identities = 31/174 (17%), Positives = 67/174 (38%), Gaps = 29/174 (16%)
Query: 36 RTVECIDRNFYTIPEGI-------DLDT-----------------QVLDLSSNNINVLQK 71
+C +P+ + +L LD+ N I+ L+
Sbjct: 7 EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 66
Query: 72 EIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLK 129
E+ ++ ++ L L+ +L + D+ F TN+ EL L N + + + L
Sbjct: 67 ELCQKL--PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124
Query: 130 SINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLD 183
+++L+HN ++ + ++ + +SN +I + SE + S L+
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS-SLKKLE 177
Score = 80.4 bits (199), Expect = 3e-17
Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 10/124 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q L L + + + N+ L L + ++D G+ ++ LDL N L
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516
Query: 117 STVPSLIYI----------PYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY 166
+ + +L +NL N ++I F+ ++ ID+ ++T+
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576
Query: 167 SEAF 170
+ F
Sbjct: 577 ASVF 580
Score = 80.4 bits (199), Expect = 3e-17
Identities = 23/114 (20%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 57 QVLDLSSNNINV--LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
+ L LS++ ++ L E F+ + + + L L K K+ ++ AF + +++ LDL N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415
Query: 115 LLSTVP---SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + + I L++N Q++ SF P ++ + + + +
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469
Score = 79.3 bits (196), Expect = 7e-17
Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 11/125 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L LS++ ++ FL + TN+ L L L V + +F + ++ L N +
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284
Query: 117 STVP--SLIYIPYLKSINLAHN---------PINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ SL + ++ +NL + + +I +SFQ + +++M + I I
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344
Query: 166 YSEAF 170
S F
Sbjct: 345 KSNMF 349
Score = 75.8 bits (187), Expect = 9e-16
Identities = 21/121 (17%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q L LS+N I L+ E ++++KL L +++ F + + L L++ L
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207
Query: 117 STVP-----SLIYIPYLKSINLAHNPINQISSYSFQS--TPGIRYIDMSNCQIHTIYSEA 169
+ +++++L+++ ++ S+ +F + +D+S ++ + +++
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267
Query: 170 F 170
F
Sbjct: 268 F 268
Score = 74.3 bits (183), Expect = 3e-15
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 9/122 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR---GVTNMDELDLSD 113
+ L+LSSN I F I + L+L +L T++ L LS+
Sbjct: 174 KKLELSSNQIKEFSPGCFH--AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231
Query: 114 NLLSTVPSLIY----IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
+ LST + + L ++L++N +N + + SF P + Y + I ++S +
Sbjct: 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291
Query: 170 FY 171
+
Sbjct: 292 LH 293
Score = 73.5 bits (181), Expect = 5e-15
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Query: 57 QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG--VTNMDELDLSD 113
L L++ + L +++ L++ T+I+ L L +L + F G TN+ LDLS
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257
Query: 114 NLLSTVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSN---------CQI 162
N L+ V S ++P L+ L +N I + S+S +RY+++ +
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317
Query: 163 HTIYSEAF 170
I +F
Sbjct: 318 PKIDDFSF 325
Score = 72.3 bits (178), Expect = 1e-14
Identities = 25/124 (20%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA--------FRGVTNMDE 108
+LDLS+NNI + ++ + ++ L L+ L + A +G++++
Sbjct: 483 TILDLSNNNIANINDDMLEGL--EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540
Query: 109 LDLSDNLLSTVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY 166
L+L N +P + LK I+L N +N + + F + ++ +++ I ++
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600
Query: 167 SEAF 170
+ F
Sbjct: 601 KKVF 604
Score = 69.6 bits (171), Expect = 1e-13
Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 8/115 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+S ++ + F + ++ L + + + F G+ N+ L LS++
Sbjct: 308 TKQSISLASLPKIDDFSFQWL--KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365
Query: 117 STVP------SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
S + L +NL N I++I S +F + +D+ +I
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420
Score = 68.9 bits (169), Expect = 2e-13
Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQM------GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110
++LDL NN+ L K G++++ L L + + F+ + + +D
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566
Query: 111 LSDNLLSTVP--SLIYIPYLKSINLAHNPINQISSYSFQST-PGIRYIDMSNCQIH 163
L N L+T+P LKS+NL N I + F + +DM
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622
Score = 53.5 bits (129), Expect = 3e-08
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIH 163
+ + D S L+ VP + + +NL HN + ++ + +F + +D+ I
Sbjct: 4 VSHEVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62
Query: 164 TIYSEAF 170
+ E
Sbjct: 63 KLEPELC 69
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 86.1 bits (213), Expect = 3e-19
Identities = 24/137 (17%), Positives = 59/137 (43%), Gaps = 4/137 (2%)
Query: 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF 94
+ V+ +P+ + T +L++S N I+ L L ++ ++ L + ++++
Sbjct: 2 EFLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDIL--SLSKLRILIISHNRIQY 59
Query: 95 VDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYS-FQSTPGIR 153
+D F+ ++ LDLS N L + LK ++L+ N + + F + ++
Sbjct: 60 LDISVFKFNQELEYLDLSHNKLVKISC-HPTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118
Query: 154 YIDMSNCQIHTIYSEAF 170
++ +S +
Sbjct: 119 FLGLSTTHLEKSSVLPI 135
Score = 56.4 bits (136), Expect = 2e-09
Identities = 19/117 (16%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Query: 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD-DRAFRGVTNMDELDLSD 113
+ + L L N + L K + + ++Q+L + + + + + ++ L++S
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408
Query: 114 NLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
N+L+ P +K ++L N I I + ++ +++++ Q+ ++ F
Sbjct: 409 NILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLE-ALQELNVASNQLKSVPDGIF 464
Score = 52.9 bits (127), Expect = 4e-08
Identities = 12/119 (10%), Positives = 39/119 (32%), Gaps = 7/119 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ + + + ++ ++ + L L +T ++ L L N L
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKI--SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360
Query: 117 STVPSLIYI----PYLKSINLAHNPINQISSY-SFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ + + L+ ++++ N ++ T + ++MS+ +
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419
Score = 47.6 bits (113), Expect = 2e-06
Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 6/106 (5%)
Query: 56 TQVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
Q LD+S N+++ +K ++ L + L R + LDL N
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWT--KSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSN 431
Query: 115 LLSTVPSLIYI-PYLKSINLAHNPINQISSYSFQSTPGIRYIDMSN 159
+ ++P + L+ +N+A N + + F ++ I +
Sbjct: 432 KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477
Score = 47.2 bits (112), Expect = 3e-06
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 48 IPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
I + +VLDL SN I + K++ + +Q+L + +L+ V D F +T++
Sbjct: 415 IFRCLPPRIKVLDLHSNKIKSIPKQVV---KLEALQELNVASNQLKSVPDGIFDRLTSLQ 471
Query: 108 ELDLSDN 114
++ L N
Sbjct: 472 KIWLHTN 478
Score = 43.7 bits (103), Expect = 4e-05
Identities = 15/133 (11%), Positives = 42/133 (31%), Gaps = 8/133 (6%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKC---KLEFVDDRAFRGVTNMDELDLSDNL 115
+S+ + T+++ L + + F + +NM+ + + +
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311
Query: 116 LSTVPSLI--YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
V L I ++ ++N + + + + + Q+ + A
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371
Query: 174 VLPGSNLT-LDCR 185
+ +L LD
Sbjct: 372 QMK--SLQQLDIS 382
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 86.1 bits (213), Expect = 3e-19
Identities = 34/199 (17%), Positives = 78/199 (39%), Gaps = 9/199 (4%)
Query: 5 FILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSN 64
+ S + LA + + P S + + V+ +RN +P+ + T+ L LS N
Sbjct: 8 IVGSFHFVCALALIVGSMTP--FSNE---LESMVDYSNRNLTHVPKDLPPRTKALSLSQN 62
Query: 65 NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY 124
+I+ L+ ++ ++ L L ++ +D F +++ LD+S N L +
Sbjct: 63 SISELRMPDIS--FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCP- 119
Query: 125 IPYLKSINLAHNPINQISSYS-FQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLD 183
+ L+ ++L+ N + + F + + ++ +S + + + L L L
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLV 179
Query: 184 CRVQSATPCRIMWSINRKI 202
+ N +
Sbjct: 180 SYHIKGGETESLQIPNTTV 198
Score = 53.3 bits (128), Expect = 3e-08
Identities = 14/127 (11%), Positives = 41/127 (32%), Gaps = 10/127 (7%)
Query: 45 FYTIPEGI---DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101
F E + + + LS ++ + ++ L + +
Sbjct: 317 FLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP--SSFTFLNFTQNVFTDSVFQGCS 374
Query: 102 GVTNMDELDLSDNLLSTVPSLIYIP-YLKSINLAHNPINQISSYSF----QSTPGIRYID 156
+ + L L N L + + + S+ +N ++S+++ I ++
Sbjct: 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434
Query: 157 MSNCQIH 163
+S+ +
Sbjct: 435 LSSNMLT 441
Score = 43.3 bits (102), Expect = 5e-05
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
VL+LSSN L +F + ++ L L ++ + + + EL+++ N
Sbjct: 430 ILVLNLSSNM---LTGSVFRCLP-PKVKVLDLHNNRIMSIPK-DVTHLQALQELNVASNQ 484
Query: 116 LSTVP--SLIYIPYLKSINLAHNP 137
L +VP + L+ I L NP
Sbjct: 485 LKSVPDGVFDRLTSLQYIWLHDNP 508
Score = 39.9 bits (93), Expect = 7e-04
Identities = 8/116 (6%), Positives = 35/116 (30%), Gaps = 2/116 (1%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ +L+ ++ + + + ++ +++ F + + M+ LS +
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341
Query: 117 STVPSLI--YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ + +N N + ++ + + + + A
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 85.2 bits (211), Expect = 6e-19
Identities = 23/116 (19%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+NI + F + ++++ L L + ++ R F + ++ L+L+ N +
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302
Query: 117 STVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ + + + L+ +NL++N + ++ S +F P + YID+ I I + F
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358
Score = 81.4 bits (201), Expect = 1e-17
Identities = 36/172 (20%), Positives = 61/172 (35%), Gaps = 33/172 (19%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM--------- 77
CS R N +P+ ++ T+ L LS N I + F +
Sbjct: 2 CSFD----GRIAFYRFCNLTQVPQVLN-TTERLLLSFNYIRTVTASSFPFLEQLQLLELG 56
Query: 78 --------------GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--- 120
+ N++ L L K+ F+ AF+G+ ++ EL L LS
Sbjct: 57 SQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116
Query: 121 -SLIYIPYLKSINLAHNPINQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ L ++L+ N I + SF ++ ID S+ QI +
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168
Score = 77.2 bits (190), Expect = 4e-16
Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 53 DLDTQVLDLSSNNINVLQKEIFLQ----------MGITNIQKLYLRKCKLEFVDDRAFRG 102
++ ++LD+S N V F + +I ++ D F G
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262
Query: 103 V--TNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMS 158
+ +++ LDLS + ++ S + + LK +NLA+N IN+I+ +F ++ +++S
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322
Query: 159 NCQIHTIYSEAFY 171
+ +YS FY
Sbjct: 323 YNLLGELYSSNFY 335
Score = 73.3 bits (180), Expect = 6e-15
Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE--FVDDRAFRGVTNMDELDLSDN 114
++LDL S+ I L + F G+ ++ +L L C L + D FR + + LDLS N
Sbjct: 76 RILDLGSSKIYFLHPDAF--QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133
Query: 115 LLSTVP---SLIYIPYLKSINLAHNPINQISSYSFQS--TPGIRYIDMSNCQIHTIYSEA 169
+ ++ S + LKSI+ + N I + + + + + ++ +++ S
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193
Query: 170 FYVMVLPGSNLTL 182
+ + P N+ L
Sbjct: 194 WGKCMNPFRNMVL 206
Score = 73.3 bits (180), Expect = 7e-15
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
QVL+LS N + L F G+ + + L+K + + D+ F+ + + LDL DN L
Sbjct: 317 QVLNLSYNLLGELYSSNF--YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+T+ + P + I L+ N + + + + I +S ++ + F
Sbjct: 375 TTIHFI---PSIPDIFLSGNKLVTLPKINLTAN----LIHLSENRLENLDILYF 421
Score = 69.1 bits (169), Expect = 2e-13
Identities = 23/129 (17%), Positives = 56/129 (43%), Gaps = 6/129 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQ---MGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113
+ L L N + + + G++++Q LYL L + F +T + L L+
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513
Query: 114 NLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
N L+ + L+ ++++ N + + F S + +D+++ + + ++
Sbjct: 514 NRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVS---LSVLDITHNKFICECELSTFIN 570
Query: 174 VLPGSNLTL 182
L +N+T+
Sbjct: 571 WLNHTNVTI 579
Score = 68.7 bits (168), Expect = 2e-13
Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 9/135 (6%)
Query: 44 NFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA-FRG 102
N I+L ++ LS N + L FL + ++Q L L + +
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLL-RVPHLQILILNQNRFSSCSGDQTPSE 449
Query: 103 VTNMDELDLSDNLLSTVP-------SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYI 155
++++L L +N+L + +L+ + L HN +N + F +R +
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509
Query: 156 DMSNCQIHTIYSEAF 170
+++ ++ +
Sbjct: 510 SLNSNRLTVLSHNDL 524
Score = 64.4 bits (157), Expect = 6e-12
Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 22/136 (16%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN------MDELD 110
+ +D SSN I ++ + + + L L + N ++ LD
Sbjct: 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210
Query: 111 LSDNLLSTVP--------------SLIYIPYLKSINLAHNPINQISSYSFQS--TPGIRY 154
+S N + SLI ++ + I +F +R+
Sbjct: 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270
Query: 155 IDMSNCQIHTIYSEAF 170
+D+S+ + ++ S F
Sbjct: 271 LDLSHGFVFSLNSRVF 286
Score = 57.9 bits (140), Expect = 9e-10
Identities = 25/136 (18%), Positives = 55/136 (40%), Gaps = 22/136 (16%)
Query: 57 QVLDLSSNNINVLQ-----KEIFL-QMGITNIQK-------LYLRKCKLEFVDDRAF-RG 102
Q LDL N + + +IFL + + K ++L + +LE +D F
Sbjct: 365 QTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR 424
Query: 103 VTNMDELDLSDNLLSTVPS---LIYIPYLKSINLAHNPIN-----QISSYSFQSTPGIRY 154
V ++ L L+ N S+ P L+ + L N + ++ F+ ++
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484
Query: 155 IDMSNCQIHTIYSEAF 170
+ +++ ++++ F
Sbjct: 485 LYLNHNYLNSLPPGVF 500
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 77.4 bits (191), Expect = 3e-17
Identities = 25/179 (13%), Positives = 55/179 (30%), Gaps = 33/179 (18%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM--- 77
C C + ++ IP + TQ L L ++ + F +
Sbjct: 2 GCSSPPCEC---HQEEDFRVTCKDIQRIP-SLPPSTQTLKLIETHLRTIPSHAFSNLPNI 57
Query: 78 --------------------GITNIQKLYLRKCK-LEFVDDRAFRGVTNMDELDLSDNLL 116
++ + + +R + L ++D A + + + L + + L
Sbjct: 58 SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL 117
Query: 117 STVPSLIYI---PYLKSINLAHNP-INQISSYSFQS-TPGIRYIDMSNCQIHTIYSEAF 170
P L + + + NP + I +FQ + + N ++ AF
Sbjct: 118 KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF 176
Score = 55.4 bits (134), Expect = 2e-09
Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 6/119 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVTNM-DELDLSDN 114
+ L + + + + + L + + + AF+G+ N L L +N
Sbjct: 108 KFLGIFNTGLKMFPDLTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166
Query: 115 LLSTVPSLIYI-PYLKSINLAHNP-INQISSYSFQSTP-GIRYIDMSNCQIHTIYSEAF 170
++V + L ++ L N + I +F G +D+S + + S+
Sbjct: 167 GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225
Score = 51.9 bits (125), Expect = 4e-08
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRAFRG-VTNMDELDLSD 113
T L L +N +Q F T + +YL K K L +D AF G + LD+S
Sbjct: 158 TLTLKLYNNGFTSVQGYAFNG---TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214
Query: 114 NLLSTVPS--LIYIPYLKSINL 133
++ +PS L ++ L + N
Sbjct: 215 TSVTALPSKGLEHLKELIARNT 236
Score = 46.5 bits (111), Expect = 2e-06
Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 9/98 (9%)
Query: 57 QVLDLSSNN-INVLQKEIFLQMGITN-IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
+L+++ N + + F G+ N L L V AF G T +D + L+ N
Sbjct: 133 FILEITDNPYMTSIPVNAF--QGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKN 189
Query: 115 -LLSTVPSLIY---IPYLKSINLAHNPINQISSYSFQS 148
L+ + + ++++ + + S +
Sbjct: 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH 227
Score = 45.4 bits (108), Expect = 5e-06
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMS-NCQI 162
++ ++ + +PSL P +++ L + I S++F + P I I +S + +
Sbjct: 11 HQEEDFRVTCKDIQRIPSLP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL 68
Query: 163 HTIYSEAFY 171
+ S +FY
Sbjct: 69 QQLESHSFY 77
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 78.5 bits (194), Expect = 4e-17
Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 18/130 (13%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
++ ++ +++ + N+++L L L + T ++ L+LS N+L
Sbjct: 13 KIEKVTDSSLKQALASLR--QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70
Query: 117 STVPSLIYIPYLKSINLAHNPI----------------NQISSYSFQSTPGIRYIDMSNC 160
L + L++++L +N + N IS S G + I ++N
Sbjct: 71 YETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN 130
Query: 161 QIHTIYSEAF 170
+I +
Sbjct: 131 KITMLRDLDE 140
Score = 77.0 bits (190), Expect = 1e-16
Identities = 23/120 (19%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG-VTN 105
+ + + L++N I +L+ + +Q L L+ +++ V+
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCR--SRVQYLDLKLNEIDTVNFAELAASSDT 170
Query: 106 MDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
++ L+L N + V + LK+++L+ N + + FQS G+ +I + N ++ I
Sbjct: 171 LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI 229
Score = 62.7 bits (153), Expect = 1e-11
Identities = 21/115 (18%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
++L+LSSN + ++ ++ ++ L L ++ +++ L ++N +
Sbjct: 61 ELLNLSSNVLYETL-DLE---SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI 111
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
S V K+I LA+N I + ++Y+D+ +I T+
Sbjct: 112 SRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165
Score = 56.9 bits (138), Expect = 1e-09
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 71 KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYL 128
EI + + L+ + N+ ELDLS N LS + L L
Sbjct: 3 HEIKQNG--NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 129 KSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ +NL+ N + + +S +R +D++N + +
Sbjct: 61 ELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQEL 95
Score = 56.5 bits (137), Expect = 2e-09
Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 6/115 (5%)
Query: 47 TIPEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN 105
+ + + LDLSSN + + E + + LR KL ++ A R N
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLAFMGPEF---QSAAGVTWISLRNNKLVLIEK-ALRFSQN 238
Query: 106 MDELDLSDNLLSTVPSLIYIPYLKSI-NLAHNPINQISSYSFQSTPGIRYIDMSN 159
++ DL N + + + +A + +++ + +
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293
Score = 36.9 bits (86), Expect = 0.004
Identities = 7/43 (16%), Positives = 17/43 (39%)
Query: 128 LKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
K + + + Q + QS ++ +D+S + I +
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL 54
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 77.6 bits (191), Expect = 2e-16
Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 18/131 (13%)
Query: 56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
++ ++ +++ + N+++L L L + T ++ L+LS N+
Sbjct: 12 YKIEKVTDSSLKQALASLR--QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 116 LSTVPSLIYIPYLKSINLAHNPI----------------NQISSYSFQSTPGIRYIDMSN 159
L L + L++++L +N + N IS S G + I ++N
Sbjct: 70 LYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLAN 129
Query: 160 CQIHTIYSEAF 170
+I +
Sbjct: 130 NKITMLRDLDE 140
Score = 76.4 bits (188), Expect = 5e-16
Identities = 23/110 (20%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG-VTNMDELDLSDNL 115
+ + L++N I +L+ + +Q L L+ +++ V+ ++ L+L N
Sbjct: 123 KNIYLANNKITMLRDLDEGCR--SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180
Query: 116 LSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ V + LK+++L+ N + + FQS G+ +I + N ++ I
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI 229
Score = 70.6 bits (173), Expect = 4e-14
Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 12/122 (9%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
+ G + + L ++NNI+ + + +YL K+ + D + +
Sbjct: 94 ELLVGPSI--ETLHAANNNISRVSCSRG-----QGKKNIYLANNKITMLRDLDEGCRSRV 146
Query: 107 DELDLSDNLLSTVPSLIYI---PYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIH 163
LDL N + TV L+ +NL +N I + ++ +D+S+ ++
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA 204
Query: 164 TI 165
+
Sbjct: 205 FM 206
Score = 68.7 bits (168), Expect = 2e-13
Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 22/133 (16%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ LDLS N ++ + T ++ L L L D ++ + LDL++N +
Sbjct: 37 KELDLSGNPLSQISAADLAPF--TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92
Query: 117 STVPSLI-------------YIPY-----LKSINLAHNPINQISSYSFQSTPGIRYIDMS 158
+ + K+I LA+N I + ++Y+D+
Sbjct: 93 QELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152
Query: 159 NCQIHTIYSEAFY 171
+I T+
Sbjct: 153 LNEIDTVNFAELA 165
Score = 59.5 bits (144), Expect = 3e-10
Identities = 20/150 (13%), Positives = 47/150 (31%), Gaps = 6/150 (4%)
Query: 47 TIPEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN 105
+ + + LDLSSN + + E + + LR KL ++ A R N
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLAFMGPEF---QSAAGVTWISLRNNKLVLIEK-ALRFSQN 238
Query: 106 MDELDLSDNLLSTVPSLIYIPYLKSI-NLAHNPINQISSYSFQSTPGIRYIDMSNCQIHT 164
++ DL N + + + +A + +++ + +
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298
Query: 165 IYSEAFYVMVLPGSNLTLDCRVQSATPCRI 194
+ + ++ Q + R+
Sbjct: 299 LPAPFADRLIALKRKEHALLSGQGSETERL 328
Score = 56.8 bits (137), Expect = 2e-09
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 71 KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYL 128
EI + + L+ + N+ ELDLS N LS + L L
Sbjct: 3 HEIKQNG--NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 129 KSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ +NL+ N + + +S +R +D++N + +
Sbjct: 61 ELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQEL 95
Score = 39.4 bits (92), Expect = 8e-04
Identities = 12/157 (7%), Positives = 40/157 (25%), Gaps = 12/157 (7%)
Query: 8 SVFLLTLLASVTQASCPLGCSC--KWKAGKRTVECIDRNFYTIPEGIDLDT----QVLDL 61
++ L C + + + V+ + + G + + +
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291
Query: 62 SSNNINVLQKEIF---LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
+ L + + L + + E ++ E+D T
Sbjct: 292 GAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQ-ARQREIDALKEQYRT 350
Query: 119 VPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIR 153
V + ++ +++ S ++ +
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387
Score = 39.1 bits (91), Expect = 0.001
Identities = 12/99 (12%), Positives = 27/99 (27%), Gaps = 5/99 (5%)
Query: 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113
+ +L + L+ E Q +++ K + V D+ L+
Sbjct: 313 KEHALLSGQGSETERLECERENQ---ARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369
Query: 114 NLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTP 150
L S L ++ + + +P
Sbjct: 370 KALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSP 408
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 77.1 bits (190), Expect = 3e-16
Identities = 31/118 (26%), Positives = 65/118 (55%), Gaps = 4/118 (3%)
Query: 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
+ DLS + I L K +F T++++L L + ++ +DD AF G+T++ +L+LS N
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHF--TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333
Query: 115 LLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
L ++ S ++ + L+ ++L++N I + SF P ++ + + Q+ ++ F
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391
Score = 76.3 bits (188), Expect = 4e-16
Identities = 29/153 (18%), Positives = 62/153 (40%), Gaps = 12/153 (7%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CS CI+R + +PE + +DLS N+I L + F + ++
Sbjct: 4 GTSECSV----IGYNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFS--RLQDL 56
Query: 83 QKLYLRKCKLEF-VDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIN 139
Q L + + + + FRG++++ L L N + + + + L+ + L ++
Sbjct: 57 QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD 116
Query: 140 --QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+S F+ + + + + I I +F
Sbjct: 117 GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Score = 65.2 bits (159), Expect = 3e-12
Identities = 21/113 (18%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
Query: 60 DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
N F + + ++ L K K+ + F T++++L L+ N ++ +
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314
Query: 120 PSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ + +L +NL+ N + I S F++ + +D+S I + ++F
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367
Score = 60.5 bits (147), Expect = 9e-11
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L+LS N + + +F + ++ L L + + D++F G+ N+ EL L N L
Sbjct: 326 LKLNLSQNFLGSIDSRMF--ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383
Query: 117 STVPSLIY--IPYLKSINLAHNP 137
+VP I+ + L+ I L NP
Sbjct: 384 KSVPDGIFDRLTSLQKIWLHTNP 406
Score = 60.1 bits (146), Expect = 1e-10
Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 7/129 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE--FVDDRAFRGVTNMDELDLSDN 114
+L L N L+ F G+ N++ L L +C L+ + F+ +T+++ L L DN
Sbjct: 82 IILKLDYNQFLQLETGAF--NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139
Query: 115 LLSTVPSLIY---IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
+ + + + ++L N + I + G + + I ++
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199
Query: 172 VMVLPGSNL 180
+ N
Sbjct: 200 LGWEKCGNP 208
Score = 49.4 bits (118), Expect = 5e-07
Identities = 24/164 (14%), Positives = 48/164 (29%), Gaps = 49/164 (29%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYL--------RKCKLEFVDDRAFRGVTNMDE 108
VLDL+ N + + +E L + L L + L + T++
Sbjct: 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT 216
Query: 109 LDLSDNLLSTVPSLIY-----------------------------------------IPY 127
LDLS N + +
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276
Query: 128 LKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
+K+ +L+ + I + F + + ++ +I+ I AF+
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 76.2 bits (188), Expect = 4e-16
Identities = 16/135 (11%), Positives = 48/135 (35%), Gaps = 2/135 (1%)
Query: 38 VECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97
V+ + I + D D+ + F + + N + + + + +
Sbjct: 3 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 62
Query: 98 RAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYI 155
++ L+L+D + + + Y ++ + + N I + + FQ+ P + +
Sbjct: 63 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122
Query: 156 DMSNCQIHTIYSEAF 170
+ + ++ F
Sbjct: 123 VLERNDLSSLPRGIF 137
Score = 75.9 bits (187), Expect = 6e-16
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
VL L N+++ L + IF + L + LE ++D F+ T++ L LS N L
Sbjct: 120 TVLVLERNDLSSLPRGIF--HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ V + IP L N+++N ++ + + +D S+ I+ +
Sbjct: 178 THVDLSL-IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVN 225
Score = 73.5 bits (181), Expect = 3e-15
Identities = 27/142 (19%), Positives = 58/142 (40%), Gaps = 21/142 (14%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQ-----------------MGITNIQKLYLRK 89
T+ I + + LD S N+INV++ + ++ + + ++ L
Sbjct: 200 TLAIPIAV--EELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSY 257
Query: 90 CKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQS 148
+LE + F + ++ L +S+N L + IP LK ++L+HN + + Q
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ- 316
Query: 149 TPGIRYIDMSNCQIHTIYSEAF 170
+ + + + I T+
Sbjct: 317 FDRLENLYLDHNSIVTLKLSTH 338
Score = 70.1 bits (172), Expect = 5e-14
Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
++S N ++ L I ++ +L + V +T L L N L
Sbjct: 189 FHANVSYNLLSTLAIPIAVE-------ELDASHNSINVVRGPVNVELT---ILKLQHNNL 238
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ L+ P L ++L++N + +I + F + + +SN ++ +
Sbjct: 239 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 287
Score = 50.0 bits (120), Expect = 2e-07
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 6/92 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VLDLS N++ +++ ++ LYL + + + L LS N
Sbjct: 298 KVLDLSHNHLLHVERNQP---QFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDW 351
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQS 148
+ + + Y +
Sbjct: 352 DCNSLRALFRNVARPAVDDADQHCKIDYQLEH 383
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 76.9 bits (189), Expect = 4e-16
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
VL L N+++ L + IF + L + LE ++D F+ T++ L LS N L
Sbjct: 126 TVLVLERNDLSSLPRGIF--HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ V L IP L N+++N ++ ++ + +D S+ I+ +
Sbjct: 184 THVD-LSLIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPVN 231
Score = 75.7 bits (186), Expect = 9e-16
Identities = 16/135 (11%), Positives = 48/135 (35%), Gaps = 2/135 (1%)
Query: 38 VECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97
V+ + I + D D+ + F + + N + + + + +
Sbjct: 9 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 68
Query: 98 RAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYI 155
++ L+L+D + + + Y ++ + + N I + + FQ+ P + +
Sbjct: 69 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128
Query: 156 DMSNCQIHTIYSEAF 170
+ + ++ F
Sbjct: 129 VLERNDLSSLPRGIF 143
Score = 75.3 bits (185), Expect = 1e-15
Identities = 27/142 (19%), Positives = 58/142 (40%), Gaps = 21/142 (14%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQM-----------------GITNIQKLYLRK 89
T+ I + + LD S N+INV++ + +++ + ++ L
Sbjct: 206 TLAIPIAV--EELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSY 263
Query: 90 CKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI-YIPYLKSINLAHNPINQISSYSFQS 148
+LE + F + ++ L +S+N L + IP LK ++L+HN + + Q
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ- 322
Query: 149 TPGIRYIDMSNCQIHTIYSEAF 170
+ + + + I T+
Sbjct: 323 FDRLENLYLDHNSIVTLKLSTH 344
Score = 71.1 bits (174), Expect = 3e-14
Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
++S N ++ L I ++ +L + V +T L L N L
Sbjct: 195 FHANVSYNLLSTLAIPIAVE-------ELDASHNSINVVRGPVNVELT---ILKLQHNNL 244
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ L+ P L ++L++N + +I + F + + +SN ++ +
Sbjct: 245 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 293
Score = 50.7 bits (121), Expect = 2e-07
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 6/92 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VLDLS N++ +++ ++ LYL + + + L LS N
Sbjct: 304 KVLDLSHNHLLHVERNQP---QFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDW 357
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQS 148
+ + + Y +
Sbjct: 358 DCNSLRALFRNVARPAVDDADQHCKIDYQLEH 389
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 74.5 bits (183), Expect = 2e-15
Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 8/117 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGI-------TNIQKLYLRKCKL-EFVDDRAFRGVTNMDE 108
Q L+++ N + + IQ Y+ L EF + + + +
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577
Query: 109 LDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
LD N + + + L + L +N I +I T + + S+ ++ I
Sbjct: 578 LDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI 634
Score = 74.1 bits (182), Expect = 4e-15
Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 10/133 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFVDDRAFRGVTNMDELDLSDNL 115
L L N I + ++ ++ L KL + + V M +D S N
Sbjct: 598 TDLKLDYNQIEEIPEDFCAFT--DQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655
Query: 116 LSTVPSLIYIPY-------LKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
+ + I ++ L++N I + + F + I I +SN + +I
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715
Query: 169 AFYVMVLPGSNLT 181
+ N
Sbjct: 716 SLKPKDGNYKNTY 728
Score = 72.6 bits (178), Expect = 1e-14
Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 17/144 (11%)
Query: 44 NFYTIPEGIDLDT----QVLDLSSNNINVLQKEIFLQMGI---TNIQKLYLRKCKLEFVD 96
IP + + +D S N I + I M N + L +++
Sbjct: 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689
Query: 97 DRAFRGVTNMDELDLSDNLLSTVP---------SLIYIPYLKSINLAHNPINQIS-SYSF 146
F + + + LS+NL++++P + L +I+L N + +S +
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749
Query: 147 QSTPGIRYIDMSNCQIHTIYSEAF 170
+ P + +D+S + ++
Sbjct: 750 TTLPYLSNMDVSYNCFSSFPTQPL 773
Score = 66.8 bits (163), Expect = 1e-12
Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 16/139 (11%)
Query: 44 NFYTIPEGIDLDT----QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA 99
N P L +LD N + L E F + L L ++E + +
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTN--VKLTDLKLDYNQIEEIPEDF 614
Query: 100 FRGVTNMDELDLSDNLLSTVPSLIYI---PYLKSINLAHNPINQISSYSFQSTPGIR--- 153
++ L S N L +P++ + S++ ++N I S +
Sbjct: 615 CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674
Query: 154 --YIDMSNCQIHTIYSEAF 170
+ +S +I +E F
Sbjct: 675 ASTVTLSYNEIQKFPTELF 693
Score = 56.4 bits (136), Expect = 3e-09
Identities = 16/129 (12%), Positives = 40/129 (31%), Gaps = 14/129 (10%)
Query: 47 TIPEGIDLDT----QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD----- 97
++ + T +D+S N + + + ++ +R + +
Sbjct: 742 SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL---NSSQLKAFGIRHQRDAEGNRILRQW 798
Query: 98 -RAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYID 156
++ +L + N + V + P L +++A NP I S
Sbjct: 799 PTGITTCPSLIQLQIGSNDIRKVDEKL-TPQLYILDIADNPNISIDVTSVCPYIEAGMYV 857
Query: 157 MSNCQIHTI 165
+ + I
Sbjct: 858 LLYDKTQDI 866
Score = 53.3 bits (128), Expect = 3e-08
Identities = 15/132 (11%), Positives = 42/132 (31%), Gaps = 7/132 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VL +++ V + + ++ + + ++ + ++ DL + +
Sbjct: 350 KVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY-KKMFLDYDQRLNLSDLLQDAI 408
Query: 117 STVPSLIYIPYLKSINLAHNPI----NQISS--YSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ P + I I+L I N+I+ + Q ++ I +N
Sbjct: 409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD 468
Query: 171 YVMVLPGSNLTL 182
+
Sbjct: 469 WEDANSDYAKQY 480
Score = 45.3 bits (107), Expect = 1e-05
Identities = 19/133 (14%), Positives = 40/133 (30%), Gaps = 6/133 (4%)
Query: 50 EGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDEL 109
I L + +N I + K I +T +Q +Y + + N D
Sbjct: 421 SRISLKDTQIGNLTNRITFISKAIQ---RLTKLQIIYFANSPFTYDNIAVDWEDANSDYA 477
Query: 110 DLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
+N + +L L + L + P P ++ ++++ + +
Sbjct: 478 KQYENEELSWSNL---KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK 534
Query: 170 FYVMVLPGSNLTL 182
L T
Sbjct: 535 ADWTRLADDEDTG 547
Score = 34.9 bits (80), Expect = 0.031
Identities = 8/70 (11%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIN 139
+ L L + A +T + L + + L L + +++ +
Sbjct: 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL-TPDMSEERKH 381
Query: 140 QISSYSFQST 149
+I + +
Sbjct: 382 RIRMHYKKMF 391
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 70.5 bits (173), Expect = 1e-14
Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 4/150 (2%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
C C GK+ V+C ++ ++P GI DT+ LDL S + L F G+T +
Sbjct: 4 CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATF--RGLTKL 61
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQ 140
L L +L+ + F +T + L L++N L+++P ++ + L + L N +
Sbjct: 62 TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS 121
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ S F ++ + ++ Q+ +I + AF
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151
Score = 45.8 bits (109), Expect = 4e-06
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 37 TVECIDRNFYTIPEGI-DLDT--QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE 93
T+ + ++P G+ D T L L N + L +F +T +++L L +L+
Sbjct: 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF--DRLTKLKELRLNTNQLQ 144
Query: 94 FVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+ AF +TN+ L LS N L +VP + + L++I L N
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 68.1 bits (167), Expect = 4e-14
Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 35/143 (24%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKE-IFLQM---- 77
CP C C+ TV+C R IP I L T L L+ N + + + +F ++
Sbjct: 2 CPAMCHCE----GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLV 57
Query: 78 ------------------GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
G ++IQ+L L + K++ + ++ F G+ + L+L DN +S V
Sbjct: 58 KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117
Query: 120 P-----SLIYIPYLKSINLAHNP 137
L L S+NLA NP
Sbjct: 118 MPGSFEHL---NSLTSLNLASNP 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 63.0 bits (154), Expect = 2e-12
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP CSC TV+C ++ ++P GI TQVL L N I L+ +F ++ T +
Sbjct: 3 CPSQCSC----SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRL--TQL 56
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+L L +L + F +T + +L L+DN L ++P + + L I L +NP
Sbjct: 57 TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 63.0 bits (154), Expect = 2e-12
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP CSC + V C + ++P GI D Q L L++N I L+ +F + N+
Sbjct: 6 CPSQCSC----DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHL--VNL 59
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
Q+LY KL + F +T + +LDL+DN L ++P + + L I L +NP
Sbjct: 60 QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 62.3 bits (152), Expect = 3e-12
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP CSC + C + ++P GI L+L SN + L +F ++ T +
Sbjct: 1 CPSRCSC----SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKL--TQL 54
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS 121
KL L + +++ + D F +T + L L +N L ++P+
Sbjct: 55 TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN 93
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 64.3 bits (157), Expect = 7e-12
Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 19/146 (13%)
Query: 44 NFYTIPEGIDLDT----QVLDLSSNNINVLQKEIFLQM-----GITNIQKLYLRKCKLEF 94
IP D + +D S N I + + F + N+ + L ++
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447
Query: 95 VDDRAFRGVTNMDELDLSDNLLSTVP---------SLIYIPYLKSINLAHNPINQI-SSY 144
F + + ++L N+L+ +P + L SI+L N + ++ +
Sbjct: 448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507
Query: 145 SFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ P + ID+S ++
Sbjct: 508 RATTLPYLVGIDLSYNSFSKFPTQPL 533
Score = 63.9 bits (156), Expect = 8e-12
Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 13/124 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+L+ N + + L L ++ + ++ L + N L
Sbjct: 333 GMLECLYNQLEGKLPAFG---SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389
Query: 117 STVPSLIYI---PYLKSINLAHNPINQISSYSFQSTPG-------IRYIDMSNCQIHTIY 166
+P++ + +I+ ++N I + +F + I++SN QI
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449
Query: 167 SEAF 170
E F
Sbjct: 450 KELF 453
Score = 61.6 bits (150), Expect = 6e-11
Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 12/135 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF-RGVTNMDELDLSDNL 115
L+L+ N I + ++ L KL+++ + + V+ M +D S N
Sbjct: 356 ASLNLAYNQITEIPANFCGFT--EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE 413
Query: 116 LSTVP--SLIYIPY-------LKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY 166
+ +V + + + SINL++N I++ F + + I++ + I
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473
Query: 167 SEAFYVMVLPGSNLT 181
+ N
Sbjct: 474 KNSLKDENENFKNTY 488
Score = 59.3 bits (144), Expect = 3e-10
Identities = 21/117 (17%), Positives = 48/117 (41%), Gaps = 8/117 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGIT------NIQKLYLRKCKL-EFVDDRAFRGVTNMDEL 109
Q+++++ N ++ + IQ +Y+ L F + + + + + L
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335
Query: 110 DLSDNLLSTV-PSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ N L P+ L S+NLA+N I +I + T + + ++ ++ I
Sbjct: 336 ECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI 392
Score = 57.4 bits (139), Expect = 1e-09
Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 13/122 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQM-----GITNIQKLYLRKCKL-EFVDDRAFRGVTNMDELD 110
++L N + + K + + LR KL + DD + + +D
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519
Query: 111 LSDNLLSTVP-SLIYIPYLKSINLAHNPI---NQISSY---SFQSTPGIRYIDMSNCQIH 163
LS N S P + LK + + N+ P + + + + I
Sbjct: 520 LSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579
Query: 164 TI 165
+
Sbjct: 580 KV 581
Score = 44.6 bits (106), Expect = 2e-05
Identities = 19/150 (12%), Positives = 51/150 (34%), Gaps = 34/150 (22%)
Query: 47 TIPEGIDLDT--QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE----------- 93
+I + + + SNNI + K + +T +++ Y+
Sbjct: 174 SIKKSSRITLKDTQIGQLSNNITFVSKAVM---RLTKLRQFYMGNSPFVAENICEAWENE 230
Query: 94 --------FVDDRAFRGVTNMDELDLSD-NLLSTVPSLIY-IPYLKSINLAHNPINQISS 143
+D + + ++ ++++ + L+ +P+ + +P ++ IN+A N
Sbjct: 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290
Query: 144 Y--------SFQSTPGIRYIDMSNCQIHTI 165
I+ I + + T
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTF 320
Score = 43.1 bits (102), Expect = 6e-05
Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 9/113 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VL L S+ V ++ + GI+ ++ D DL + +
Sbjct: 108 EVLALGSHGEKVNERLFGPK-GISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166
Query: 117 STVPSLIYIP-------YLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQI 162
++ P I I N I +S + +R M N
Sbjct: 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNSPF 218
Score = 42.3 bits (100), Expect = 9e-05
Identities = 15/140 (10%), Positives = 37/140 (26%), Gaps = 36/140 (25%)
Query: 44 NFYTIPEGIDLDT----QVLDLSSNNINVLQKEIF----LQM------------------ 77
+ + T +DLS N+ + + L+
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558
Query: 78 -----GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKS 130
++ +L + + V+++ N+ LD+ DN ++ +
Sbjct: 559 PEGITLCPSLTQLQIGSNDIRKVNEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAGM 615
Query: 131 INLAHNPINQISSYSFQSTP 150
L ++ I
Sbjct: 616 YMLFYDKTQDIRGCDALDIK 635
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 62.0 bits (151), Expect = 9e-12
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP CSC TV+C + ++P GI + Q+L L N I L+ +F + N+
Sbjct: 13 CPSQCSC----SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVF--DSLINL 66
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS 121
++LYL +L + F +T + LDL N L+ +PS
Sbjct: 67 KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS 105
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 60.0 bits (146), Expect = 3e-11
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 29/123 (23%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVL--------------------- 59
+ CP C+C V C ++ +P+GI D L
Sbjct: 2 SRCPTECTCLDT----VVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLT 57
Query: 60 --DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
DLS+N I+ L + F M T + L L +L + R F G+ ++ L L N +S
Sbjct: 58 LIDLSNNRISTLSNQSFSNM--TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 118 TVP 120
VP
Sbjct: 116 VVP 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 60.5 bits (147), Expect = 3e-11
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP CSC TVEC + ++P GI T LDL +N++ L +F +T++
Sbjct: 1 CPSRCSC----SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVF--DELTSL 54
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS 121
+LYL KL+ + + F +T++ L+LS N L ++P+
Sbjct: 55 TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 61.5 bits (149), Expect = 5e-11
Identities = 18/153 (11%), Positives = 58/153 (37%), Gaps = 24/153 (15%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEI----FLQMG----------ITNIQKLYLRKCKL 92
++P+ + VL+++ N + L + +L +++ L + +L
Sbjct: 73 SLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQL 132
Query: 93 EFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGI 152
+ + ++ ++ +N L+ +P L L+ +++ +N + + +
Sbjct: 133 TMLPE----LPALLEYINADNNQLTMLPEL--PTSLEVLSVRNNQLTFLPE----LPESL 182
Query: 153 RYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCR 185
+D+S + ++ + + + CR
Sbjct: 183 EALDVSTNLLESLPAVPVRNHHSEETEIFFRCR 215
Score = 60.4 bits (146), Expect = 1e-10
Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 15/118 (12%)
Query: 48 IPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
+ E + L L+ N++ L + I L + + L + + +++
Sbjct: 53 LKECLINQFSELQLNRLNLSSLPDNLP-----PQITVLEITQNALISLPEL----PASLE 103
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
LD DN LST+P L LK +++ +N + + + YI+ N Q+ +
Sbjct: 104 YLDACDNRLSTLPEL--PASLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTML 155
Score = 48.8 bits (116), Expect = 8e-07
Identities = 15/115 (13%), Positives = 36/115 (31%), Gaps = 10/115 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV---TNMDELDLSD 113
+VL + +N + L + +++ L + LE + R +
Sbjct: 163 EVLSVRNNQLTFLPELP------ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRE 216
Query: 114 NLLSTVP-SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
N ++ +P +++ + +I L NP++ S
Sbjct: 217 NRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271
Score = 46.1 bits (109), Expect = 6e-06
Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 17/121 (14%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
+PE L + ++ +N + +L + T+++ L +R +L F+ + ++
Sbjct: 134 MLPELPAL-LEYINADNNQLTMLPELP------TSLEVLSVRNNQLTFLPE----LPESL 182
Query: 107 DELDLSDNLLSTVPSLIY-----IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQ 161
+ LD+S NLL ++P++ N I I + S I + +
Sbjct: 183 EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPE-NILSLDPTCTIILEDNP 241
Query: 162 I 162
+
Sbjct: 242 L 242
Score = 38.8 bits (90), Expect = 0.001
Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 6/109 (5%)
Query: 47 TIPEGID-LDTQVLDLSSNNINVLQKEIF-LQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104
+PE + L + LD+S+N + L R+ ++ + + +
Sbjct: 174 FLPELPESL--EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPE-NILSLD 230
Query: 105 NMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIR 153
+ L DN LS+ + + H P S Q R
Sbjct: 231 PTCTIILEDNPLSSRIR-ESLSQQTAQPDYHGPRIYFSMSDGQQNTLHR 278
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 59.9 bits (145), Expect = 2e-10
Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 16/119 (13%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
T+P+ + L + NN+ L ++ L + +L + G+ +
Sbjct: 54 TLPDCLPAHITTLVIPDNNLTSLPAL------PPELRTLEVSGNQLTSLPV-LPPGLLEL 106
Query: 107 DELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
L +PS L + + N + + PG++ + +S+ Q+ ++
Sbjct: 107 SIFSNPLTHLPALPS-----GLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL 156
Score = 58.8 bits (142), Expect = 5e-10
Identities = 21/139 (15%), Positives = 51/139 (36%), Gaps = 17/139 (12%)
Query: 29 CKWKAGKRTVECIDRN--FYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
W+ E R + ++ VL++ + + L + +I L
Sbjct: 13 SAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLP-----AHITTLV 67
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSF 146
+ L + + L++S N L+++P L P L +++ NP+ + +
Sbjct: 68 IPDNNLTSLPAL----PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPA--- 118
Query: 147 QSTPGIRYIDMSNCQIHTI 165
G+ + + Q+ ++
Sbjct: 119 -LPSGLCKLWIFGNQLTSL 136
Score = 53.7 bits (129), Expect = 2e-08
Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 17/122 (13%)
Query: 44 NFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
++P Q L +S N + L + + KL+ +L +
Sbjct: 132 QLTSLPVLPP-GLQELSVSDNQLASLPALP------SELCKLWAYNNQLTSLPM----LP 180
Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIH 163
+ + EL +SDN L+++P+L L + +N + + + G++ + +S ++
Sbjct: 181 SGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLT 234
Query: 164 TI 165
++
Sbjct: 235 SL 236
Score = 52.6 bits (126), Expect = 4e-08
Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 16/109 (14%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q L +S N + L + + KL+ +L + + + EL +S N L
Sbjct: 184 QELSVSDNQLASLPTLP------SELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRL 233
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+++P L LK + ++ N + + G+ + + Q+ +
Sbjct: 234 TSLPVL--PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRL 276
Score = 52.6 bits (126), Expect = 5e-08
Identities = 17/93 (18%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L +S N + L + +++L + +L + + + L + N L
Sbjct: 224 KELIVSGNRLTSLPVLP------SELKELMVSGNRLTSLPML----PSGLLSLSVYRNQL 273
Query: 117 STVP-SLIYIPYLKSINLAHNPINQISSYSFQS 148
+ +P SLI++ ++NL NP+++ + + +
Sbjct: 274 TRLPESLIHLSSETTVNLEGNPLSERTLQALRE 306
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 59.6 bits (145), Expect = 2e-10
Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L ++N I+ + L +TN+ +L L +L+ + +TN+ +LDL++N +
Sbjct: 202 ESLIATNNQISDI---TPLG-ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI 255
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
S + L + L + L N I+ IS + ++++ Q+ I
Sbjct: 256 SNLAPLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI 302
Score = 58.4 bits (142), Expect = 6e-10
Identities = 18/127 (14%), Positives = 46/127 (36%), Gaps = 8/127 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L+L+ N + + + N+ L L + + +T + L +N +
Sbjct: 290 TNLELNENQLEDI--SPISNL--KNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKV 343
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLP 176
S V SL + + ++ HN I+ ++ + I + +++ + +P
Sbjct: 344 SDVSSLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQAWTNAPVNYKANVSIP 401
Query: 177 GSNLTLD 183
+ +
Sbjct: 402 NTVKNVT 408
Score = 55.7 bits (135), Expect = 4e-09
Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L N+ + Q + + L + ++ +D + N+ +++ S+N L
Sbjct: 27 MKTVLGKTNV----TDTVSQTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQL 80
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + L + L I + +N I I+ + + + + N QI I
Sbjct: 81 TDITPLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDI 127
Score = 55.4 bits (134), Expect = 5e-09
Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 21/126 (16%)
Query: 57 QVLDLSSNNINVLQ--------KEIFLQMGI---------TNIQKLYLRKCKLEFVDDRA 99
L+LSSN I+ + +++ + T +++L + K+ +
Sbjct: 137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS--V 194
Query: 100 FRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSN 159
+TN++ L ++N +S + L + L ++L N + I + S + +D++N
Sbjct: 195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLAN 252
Query: 160 CQIHTI 165
QI +
Sbjct: 253 NQISNL 258
Score = 55.4 bits (134), Expect = 6e-09
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LDL++N I+ L L G+T + +L L ++ + G+T + L+L++N L
Sbjct: 246 TDLDLANNQISNL---APLS-GLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQL 299
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + + L + L N I+ IS S ++ + N ++ +
Sbjct: 300 EDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKVSDV 346
Score = 54.6 bits (132), Expect = 1e-08
Identities = 16/109 (14%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L I + ++ + N+ ++ +L D + +T + ++ +++N +
Sbjct: 49 TTLQADRLGIKSID---GVE-YLNNLTQINFSNNQLT--DITPLKNLTKLVDILMNNNQI 102
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + L + L + L +N I I ++ + +++S+ I I
Sbjct: 103 ADITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDI 149
Score = 52.3 bits (126), Expect = 5e-08
Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 10/128 (7%)
Query: 40 CIDRNFYTIPEGIDLDT--QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97
DR +G++ ++ S+N + + L+ +T + + + ++ D
Sbjct: 52 QADRLGIKSIDGVEYLNNLTQINFSNNQLTDI---TPLK-NLTKLVDILMNNNQIA--DI 105
Query: 98 RAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDM 157
+TN+ L L +N ++ + L + L + L+ N I+ IS + ++ +
Sbjct: 106 TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSF 163
Query: 158 SNCQIHTI 165
N
Sbjct: 164 GNQVTDLK 171
Score = 50.7 bits (122), Expect = 2e-07
Identities = 21/109 (19%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ +++N I + L +TN+ L L ++ +D + +TN++ L+LS N +
Sbjct: 93 VDILMNNNQIADI---TPLA-NLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTI 146
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
S + +L + L+ ++ N + + + + +D+S+ ++ I
Sbjct: 147 SDISALSGLTSLQQLSF-GNQVTDLK--PLANLTTLERLDISSNKVSDI 192
Score = 50.0 bits (120), Expect = 3e-07
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 8/105 (7%)
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
IN +IF + K L K + D + + + L + ++
Sbjct: 9 TQDTPIN----QIFTDTALAEKMKTVLGKTNVT--DTVSQTDLDQVTTLQADRLGIKSID 62
Query: 121 SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ Y+ L IN ++N + I+ ++ + I M+N QI I
Sbjct: 63 GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI 105
Score = 29.5 bits (67), Expect = 1.3
Identities = 5/58 (8%), Positives = 14/58 (24%), Gaps = 2/58 (3%)
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
D ++ + + + L + S + + I +I
Sbjct: 6 ATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI 61
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 57.0 bits (138), Expect = 3e-10
Identities = 19/108 (17%), Positives = 47/108 (43%), Gaps = 5/108 (4%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
++ L++ I + ++L LR K+ +++ + D +D SDN +
Sbjct: 1 MVKLTAELIEQAAQYTNA----VRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIR 55
Query: 118 TVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + LK++ + +N I +I Q+ P + + ++N + +
Sbjct: 56 KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103
Score = 49.3 bits (118), Expect = 2e-07
Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 10/106 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+D S N I L L ++ L + ++ + + + + ++ EL L++N L
Sbjct: 45 DAIDFSDNEIRKLDGFPLL----RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100
Query: 117 STVPSLIYI---PYLKSINLAHNPINQISSYS---FQSTPGIRYID 156
+ L + L + + NP+ Y P +R +D
Sbjct: 101 VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 58.7 bits (143), Expect = 3e-10
Identities = 17/109 (15%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L+ N I + L +T++ ++ + +T ++ L + +N +
Sbjct: 180 YSLSLNYNQIEDI---SPLA-SLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKI 233
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + L + L + + N I+ I+ + + ++ +++ + QI I
Sbjct: 234 TDLSPLANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDI 280
Score = 57.9 bits (141), Expect = 6e-10
Identities = 18/114 (15%), Positives = 44/114 (38%), Gaps = 8/114 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
N I + + +T + L + K+ + ++ + L++ N +
Sbjct: 202 HYFTAYVNQITDI---TPVA-NMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQI 255
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
S + ++ + LK +N+ N I+ IS + + + ++N Q+ E
Sbjct: 256 SDINAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVI 307
Score = 57.2 bits (139), Expect = 9e-10
Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 6/109 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L + +N I L L ++ + L + ++ ++ A + +T + L++ N +
Sbjct: 224 NSLKIGNNKITDL---SPLA-NLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQI 277
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
S + L + L S+ L +N + + + +S I I
Sbjct: 278 SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326
Score = 56.8 bits (138), Expect = 1e-09
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
++L++ SN I+ + + + + + L+L +L D G+TN+ L LS N +
Sbjct: 268 KMLNVGSNQISDI--SVLNNL--SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323
Query: 117 STVPSLIYIPYLKSINLAHNPI 138
+ + L + + S + A+ I
Sbjct: 324 TDIRPLASLSKMDSADFANQVI 345
Score = 56.0 bits (136), Expect = 2e-09
Identities = 21/109 (19%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L ++ ++ Q + +I KL + K+ + +TN++ L+L+ N +
Sbjct: 25 IRAVLQKASV----TDVVTQEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQI 78
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + L + L ++ + N I IS + Q+ +R + ++ I I
Sbjct: 79 TDISPLSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNISDI 125
Score = 55.6 bits (135), Expect = 4e-09
Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 7/109 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L+L +N+ + +T + L + + K++ V +T++ L L+ N +
Sbjct: 135 YSLNLGANHNLSDLSPLS---NMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQI 189
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ L + L N I I+ + + + + N +I +
Sbjct: 190 EDISPLASLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDL 236
Score = 53.3 bits (129), Expect = 2e-08
Identities = 16/112 (14%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L ++ + +Q +L TN++ L L ++ + + + L + N +
Sbjct: 47 TKLVVAGEKVASIQGIEYL----TNLEYLNLNGNQITDIS--PLSNLVKLTNLYIGTNKI 100
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
+ + +L + L+ + L + I+ IS + + +++ + S
Sbjct: 101 TDISALQNLTNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSDLSP 150
Score = 52.5 bits (127), Expect = 3e-08
Identities = 18/108 (16%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L++ +N I+ + + T ++ L + ++ + ++ ++ L L++N L
Sbjct: 246 TWLEIGTNQISDI--NAVKDL--TKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQL 299
Query: 117 STVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQI 162
+ + L ++ L+ N I I S + D +N I
Sbjct: 300 GNEDMEVIGGLTNLTTLFLSQNHITDIR--PLASLSKMDSADFANQVI 345
Score = 50.6 bits (122), Expect = 1e-07
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L L+ +NI+ + L +T + L L D +T ++ L ++++ +
Sbjct: 113 RELYLNEDNISDI---SPLA-NLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKV 167
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
V + + L S++L +N I IS S + Y QI I
Sbjct: 168 KDVTPIANLTDLYSLSLNYNQIEDIS--PLASLTSLHYFTAYVNQITDI 214
Score = 40.6 bits (96), Expect = 3e-04
Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIH 163
L ++ V + + + + +A + I + + Y++++ QI
Sbjct: 22 AEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQIT 79
Query: 164 TI 165
I
Sbjct: 80 DI 81
Score = 37.1 bits (87), Expect = 0.004
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L++N + E+ + TN+ L+L + + D R ++ MD D ++ ++
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGL--TNLTTLFLSQNHIT--DIRPLASLSKMDSADFANQVI 345
Query: 117 S 117
Sbjct: 346 K 346
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 58.6 bits (141), Expect = 5e-10
Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 13/136 (9%)
Query: 29 CKWKAGKRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
K + V + T+ ++ L LDLS N + L + + ++ L
Sbjct: 436 LKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPAL---AALRCLEVLQ 492
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYI---PYLKSINLAHNPINQISS 143
LE VD + + EL L +N L ++ + P L +NL N + Q
Sbjct: 493 ASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550
Query: 144 YS---FQSTPGIRYID 156
+ P + I
Sbjct: 551 IQERLAEMLPSVSSIL 566
Score = 49.8 bits (118), Expect = 4e-07
Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 6/131 (4%)
Query: 30 KWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK 89
A + ++ + D +VL L+ ++ VL L+ + + L L
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL---CHLEQ-LLLVTHLDLSH 472
Query: 90 CKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSY-SFQS 148
+L + A + ++ L SDN L V + +P L+ + L +N + Q ++ S
Sbjct: 473 NRLRALPP-ALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVS 531
Query: 149 TPGIRYIDMSN 159
P + +++
Sbjct: 532 CPRLVLLNLQG 542
Score = 41.3 bits (96), Expect = 2e-04
Identities = 11/109 (10%), Positives = 34/109 (31%), Gaps = 3/109 (2%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L + + L + K + ++ L L+ L
Sbjct: 396 DPLLYEKETLQYFST--LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL 453
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + L + + ++L+HN + + + + + + S+ + +
Sbjct: 454 TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 501
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 57.4 bits (139), Expect = 8e-10
Identities = 38/184 (20%), Positives = 66/184 (35%), Gaps = 18/184 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
QVL L N I + G+TN+Q L + ++ + ++ + L DN +
Sbjct: 132 QVLYLDLNQITNISP----LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKI 185
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLP 176
S + L +P L ++L +N I+ +S +T + + ++N I FY L
Sbjct: 186 SDISPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ--PVFYNNNLV 241
Query: 177 GSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLS-----KDNSYLSVF 231
N+ P I + Y N N + + + F
Sbjct: 242 VPNVVKGPSGAPIAPATIS---DNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNTTVPF 298
Query: 232 SGGV 235
SG V
Sbjct: 299 SGTV 302
Score = 57.0 bits (138), Expect = 1e-09
Identities = 18/109 (16%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ +N+ + Q + I L + ++ + + N+ L+L DN +
Sbjct: 22 IKIAAGKSNVT----DTVTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQI 75
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + L + + + L+ NP+ +S + I+ +D+++ QI +
Sbjct: 76 TDLAPLKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDV 122
Score = 53.9 bits (130), Expect = 1e-08
Identities = 19/109 (17%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L + ++ +Q + N+ L L+ ++ + + +T + EL+LS N L
Sbjct: 44 TTLSAFGTGVTTIE---GVQ-YLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPL 97
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
V ++ + +K+++L I ++ ++ + + QI I
Sbjct: 98 KNVSAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNI 144
Score = 53.2 bits (128), Expect = 2e-08
Identities = 19/109 (17%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L+LS N + K + G+ +I+ L L ++ V G++N+ L L N +
Sbjct: 88 TELELSGNPL----KNVSAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQI 141
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + L + L+ +++ + ++ ++ + + + + +I I
Sbjct: 142 TNISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI 188
Score = 38.1 bits (89), Expect = 0.002
Identities = 5/62 (8%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIH 163
N ++ + ++ + + + +++ + I Q + +++ + QI
Sbjct: 19 ANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQIT 76
Query: 164 TI 165
+
Sbjct: 77 DL 78
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 57.8 bits (139), Expect = 9e-10
Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L+ N + +I + N+ L+L + K++ D + + + + L L N +
Sbjct: 68 TKLFLNGNKL----TDIKPLTNLKNLGWLFLDENKIK--DLSSLKDLKKLKSLSLEHNGI 121
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
S + L+++P L+S+ L +N I I+ + + + + QI I
Sbjct: 122 SDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI 168
Score = 56.7 bits (136), Expect = 3e-09
Identities = 30/193 (15%), Positives = 55/193 (28%), Gaps = 9/193 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L L +N I + L +T + L L ++ D G+T + L LS N +
Sbjct: 134 ESLYLGNNKITDIT---VLS-RLTKLDTLSLEDNQIS--DIVPLAGLTKLQNLYLSKNHI 187
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQ---STPGIRYIDMSNCQIHTIYSEAFYVM 173
S + +L + L + L ++ D S I + Y
Sbjct: 188 SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEK 247
Query: 174 VLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSG 233
+L S + + K H + + +
Sbjct: 248 PNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEA 307
Query: 234 GVDLAAASSPGGE 246
G + A P +
Sbjct: 308 GTRITAPKPPTKQ 320
Score = 55.9 bits (134), Expect = 4e-09
Identities = 18/109 (16%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+L ++ + Q + +I ++ ++ V + + N+ +L L+ N L
Sbjct: 24 IKDNLKKKSV----TDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKL 77
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + L + L + L N I +S S + ++ + + + I I
Sbjct: 78 TDIKPLTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDI 124
Score = 54.7 bits (131), Expect = 9e-09
Identities = 17/107 (15%), Positives = 42/107 (39%), Gaps = 8/107 (7%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
S I K+IF K L+K + D + ++D++ +++ + +
Sbjct: 4 TITVSTPI----KQIFPDDAFAETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKS 57
Query: 119 VPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
V + Y+P + + L N + I + + ++ + +I +
Sbjct: 58 VQGIQYLPNVTKLFLNGNKLTDIK--PLTNLKNLGWLFLDENKIKDL 102
Score = 54.3 bits (130), Expect = 1e-08
Identities = 18/109 (16%), Positives = 43/109 (39%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L N I K++ + ++ L L + ++ + ++ L L +N +
Sbjct: 90 GWLFLDENKI----KDLSSLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKI 143
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + L + L +++L N I+ I ++ + +S I +
Sbjct: 144 TDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL 190
Score = 32.8 bits (74), Expect = 0.12
Identities = 8/60 (13%), Positives = 15/60 (25%), Gaps = 2/60 (3%)
Query: 106 MDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
M E + + NL + + I I +N I ++
Sbjct: 1 MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 55.7 bits (134), Expect = 3e-09
Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 11/117 (9%)
Query: 57 QVLDLSSNNINVLQ--KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD---ELDL 111
LDLS N + + +Q L LR +E LDL
Sbjct: 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235
Query: 112 SDNLLSTVPSLI---YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
S N L + L S+NL+ + Q+ + +D+S ++
Sbjct: 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLDRN 289
Score = 54.9 bits (132), Expect = 5e-09
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q LDLS N++ + + L L L+ V ++ LDLS N L
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDW-PSQLNSLNLSFTGLKQVPKGLPAKLS---VLDLSYNRL 286
Query: 117 STVPSLIYIPYLKSINLAHNPI 138
PS +P + +++L NP
Sbjct: 287 DRNPSPDELPQVGNLSLKGNPF 308
Score = 51.4 bits (123), Expect = 7e-08
Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 11/130 (8%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEI--FLQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104
+ E D +L+L + + + Q ++ L + + R
Sbjct: 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173
Query: 105 NMDELDLSDNLLSTVPSLI------YIPYLKSINLAHNPINQISSYSFQST---PGIRYI 155
+ LDLSDN LI P L+ + L + + S ++ +
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233
Query: 156 DMSNCQIHTI 165
D+S+ +
Sbjct: 234 DLSHNSLRDA 243
Score = 41.0 bits (96), Expect = 2e-04
Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 10/137 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL----EFVDDRAFRGVTNMDELDLS 112
Q L L + + L+ ++ L LR ++ + + L ++
Sbjct: 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157
Query: 113 DNLLSTVP--SLIYIPYLKSINLAHNPI----NQISSYSFQSTPGIRYIDMSNCQIHTIY 166
+ P L +++L+ NP IS+ P ++ + + N + T
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217
Query: 167 SEAFYVMVLPGSNLTLD 183
+ LD
Sbjct: 218 GVCSALAAARVQLQGLD 234
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 54.7 bits (132), Expect = 6e-09
Identities = 23/109 (21%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L+ N + +I + N+ L+L + K++ + + + + + L L N +
Sbjct: 71 TKLFLNGNKL----TDIKPLANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGI 124
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
S + L+++P L+S+ L +N I I+ + + + + QI I
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI 171
Score = 54.7 bits (132), Expect = 6e-09
Identities = 17/109 (15%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+L ++ + Q + +I ++ ++ V + + N+ +L L+ N L
Sbjct: 27 IKDNLKKKSV----TDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKL 80
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + L + L + L N + +S S + ++ + + + I I
Sbjct: 81 TDIKPLANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGISDI 127
Score = 52.4 bits (126), Expect = 4e-08
Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L N + K++ + ++ L L + ++ + ++ L L +N +
Sbjct: 93 GWLFLDENKV----KDLSSLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKI 146
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + L + L +++L N I+ I ++ + +S I +
Sbjct: 147 TDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL 193
Score = 52.0 bits (125), Expect = 4e-08
Identities = 14/105 (13%), Positives = 40/105 (38%), Gaps = 8/105 (7%)
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
I +IF K L+K + D + ++D++ +++ + +V
Sbjct: 9 TVPTPIK----QIFSDDAFAETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKSVQ 62
Query: 121 SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ Y+P + + L N + I + + ++ + ++ +
Sbjct: 63 GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL 105
Score = 50.4 bits (121), Expect = 1e-07
Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 6/109 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L L +N I + L +T + L L ++ + G+T + L LS N +
Sbjct: 137 ESLYLGNNKITDIT---VLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
S + +L + L + L + + ++ + T
Sbjct: 191 SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 53.1 bits (128), Expect = 1e-08
Identities = 18/120 (15%), Positives = 46/120 (38%), Gaps = 9/120 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L ++ N + L + +L+L +L D + N++ L + +N L
Sbjct: 88 EELSVNRNRLKNLNGIPSA-----CLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKL 140
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLP 176
++ L ++ L+ ++L N I + +ID++ + + + +
Sbjct: 141 KSIVMLGFLSKLEVLDLHGNEITNTG--GLTRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198
Score = 48.9 bits (117), Expect = 5e-07
Identities = 16/105 (15%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
IN ++F G+ N K L K + D + + ++ + + ++ + ++
Sbjct: 4 QRPTPIN----QVFPDPGLANAVKQNLGKQSVT--DLVSQKELSGVQNFNGDNSNIQSLA 57
Query: 121 SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + LK ++L+HN I+ +S + + + ++ ++ +
Sbjct: 58 GMQFFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNRLKNL 100
Score = 48.5 bits (116), Expect = 5e-07
Identities = 15/109 (13%), Positives = 43/109 (39%), Gaps = 9/109 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+L ++ ++ Q ++ +Q ++ + + TN+ EL LS N +
Sbjct: 22 VKQNLGKQSV----TDLVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQI 75
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
S + L + L+ +++ N + ++ + + + N ++
Sbjct: 76 SDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC---LSRLFLDNNELRDT 121
Score = 30.0 bits (68), Expect = 0.76
Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
E ++ V + NL + + S + G++ + N I ++
Sbjct: 1 ESIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL 56
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 51.7 bits (124), Expect = 2e-08
Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 15/127 (11%)
Query: 41 IDRNFYTIPEGIDLDT-----QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFV 95
+D + L + L L + + + ++ ++KL L + ++
Sbjct: 31 LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKL--PKLKKLELSENRIFGG 86
Query: 96 DDRAFRGVTNMDELDLSDNLLSTVPSLIYI---PYLKSINLAHNPINQISSYS---FQST 149
D + N+ L+LS N L + +L + LKS++L + + ++ Y F+
Sbjct: 87 LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146
Query: 150 PGIRYID 156
P + Y+D
Sbjct: 147 PQLTYLD 153
Score = 49.0 bits (117), Expect = 2e-07
Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 69 LQKEIFLQMG---ITNIQKLYLRKCKLEFVDDRAFRGV-TNMDELDLSDNLLSTVPSLIY 124
+++ I L++ +++L L CK N++ L L + L +V +L
Sbjct: 10 MKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPK 69
Query: 125 IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+P LK + L+ N I + P + ++++S ++ I
Sbjct: 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 53.1 bits (128), Expect = 3e-08
Identities = 16/118 (13%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Query: 48 IPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
+ + +D L+L++ ++ L + +++ L L + + + + ++
Sbjct: 65 LRDCLDRQAHELELNNLGLSSLPEL------PPHLESLVASCNSLTELPE-LPQSLKSLL 117
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + LS +P P L+ + +++N + ++ Q++ ++ ID+ N + +
Sbjct: 118 VDNNNLKALSDLP-----PLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKL 168
Score = 52.7 bits (127), Expect = 4e-08
Identities = 19/109 (17%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ + +N + L E+ + + +Y L+ + D +++ L++ DN L
Sbjct: 218 ESIVAGNNILEEL-PELQ---NLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYL 269
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ +P L L ++++ N + +S P + Y++ S+ +I ++
Sbjct: 270 TDLPEL--PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL 312
Score = 52.7 bits (127), Expect = 4e-08
Identities = 15/109 (13%), Positives = 44/109 (40%), Gaps = 12/109 (11%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ + +N + L + L + +Y L+ + D +++ + +N+L
Sbjct: 176 EFIAAGNNQLEELPELQNL----PFLTAIYADNNSLKKLPD----LPLSLESIVAGNNIL 227
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+P L +P+L +I +N + + P + +++ + + +
Sbjct: 228 EELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDL 272
Score = 52.3 bits (126), Expect = 5e-08
Identities = 14/122 (11%), Positives = 39/122 (31%), Gaps = 23/122 (18%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD---------------RAFR 101
+ L S N++ + + N+++L++ L D
Sbjct: 340 ERLIASFNHLAEVPELP------QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393
Query: 102 GVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQ 161
N+ +L + N L P + ++ + + + ++ ++T + +
Sbjct: 394 LPQNLKQLHVETNPLREFPDIP--ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451
Query: 162 IH 163
H
Sbjct: 452 HH 453
Score = 52.3 bits (126), Expect = 6e-08
Identities = 18/109 (16%), Positives = 44/109 (40%), Gaps = 16/109 (14%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LD+S N + L + N+ L ++ + D +++EL++S+N L
Sbjct: 280 TFLDVSENIFSGLSELP------PNLYYLNASSNEIRSLCDL----PPSLEELNVSNNKL 329
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+P+L P L+ + + N + ++ ++ + + +
Sbjct: 330 IELPAL--PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREF 372
Score = 51.5 bits (124), Expect = 9e-08
Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 15/122 (12%)
Query: 44 NFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
++PE + L S N++ L + + ++ L +
Sbjct: 82 GLSSLPELPP-HLESLVASCNSLTELPELPQ---SLKSLLVDNNNLKALSDL-------P 130
Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIH 163
++ L +S+N L +P L +LK I++ +N + ++ P + +I N Q+
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLE 186
Query: 164 TI 165
+
Sbjct: 187 EL 188
Score = 40.7 bits (96), Expect = 3e-04
Identities = 25/149 (16%), Positives = 48/149 (32%), Gaps = 39/149 (26%)
Query: 49 PEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
P + Q S+N+ + E + + + Y + E M
Sbjct: 5 PRNVSNTFLQEPLRHSSNLTEMPVEAE---NVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 108 -------------ELDLSDNLLSTVPSLI------------------YIPYLKSINLAHN 136
EL+L++ LS++P L LKS+ + +N
Sbjct: 62 VSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNN 121
Query: 137 PINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ +S P + Y+ +SN Q+ +
Sbjct: 122 NLKALSD----LPPLLEYLGVSNNQLEKL 146
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 50.4 bits (121), Expect = 4e-08
Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL- 115
+ L + + + ++ ++KL L ++ + N+ L+LS N
Sbjct: 45 EFLSTINVGLTSI--ANLPKL--NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100
Query: 116 --LSTVPSLIYIPYLKSINLAHNPINQISSYS---FQSTPGIRYID 156
LST+ L + LKS++L + + ++ Y F+ P + Y+D
Sbjct: 101 KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146
Score = 47.0 bits (112), Expect = 7e-07
Identities = 12/86 (13%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 81 NIQKLYLRKCKLEFVDDRA-FRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIN 139
++++L L + ++ L + L+++ +L + LK + L+ N ++
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVS 77
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTI 165
+ P + ++++S +I +
Sbjct: 78 GGLEVLAEKCPNLTHLNLSGNKIKDL 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 51.1 bits (123), Expect = 5e-08
Identities = 17/112 (15%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L +++ + + G++N+++L + + G+T++ LD+S +
Sbjct: 69 KDLTINNIHATNYN---PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124
Query: 117 S--TVPSLIYIPYLKSINLAHNPINQISSYS-FQSTPGIRYIDMSNCQIHTI 165
+ + +P + SI+L++N I+ ++ P ++ +++ +H
Sbjct: 125 DDSILTKINTLPKVNSIDLSYN--GAITDIMPLKTLPELKSLNIQFDGVHDY 174
Score = 48.4 bits (116), Expect = 3e-07
Identities = 15/107 (14%), Positives = 42/107 (39%), Gaps = 5/107 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN-L 115
+ L + ++ + + T++ L + + + ++ +DLS N
Sbjct: 91 ERLRIMGKDVTSDKIPNLSGL--TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148
Query: 116 LSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQI 162
++ + L +P LKS+N+ + ++ + P + + + I
Sbjct: 149 ITDIMPLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193
Score = 44.6 bits (106), Expect = 9e-06
Identities = 9/85 (10%), Positives = 25/85 (29%), Gaps = 3/85 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+LD+S + + + + + L D + + + L++ + +
Sbjct: 115 TLLDISHSAHDDSILTKINTL--PKVNSIDLSYNGA-ITDIMPLKTLPELKSLNIQFDGV 171
Query: 117 STVPSLIYIPYLKSINLAHNPINQI 141
+ P L + I
Sbjct: 172 HDYRGIEDFPKLNQLYAFSQTIGGK 196
Score = 38.0 bits (89), Expect = 0.001
Identities = 8/104 (7%), Positives = 34/104 (32%), Gaps = 7/104 (6%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
L ++ + + + ++ + L + D N+ +L +++ +
Sbjct: 28 GLLGQSSTANITEA-----QMNSLTYITLANINVT--DLTGIEYAHNIKDLTINNIHATN 80
Query: 119 VPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQI 162
+ + L+ + + + + + +D+S+
Sbjct: 81 YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens}
PDB: 3rez_A*
Length = 130
Score = 49.0 bits (117), Expect = 8e-08
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 23 CPLGCSCKWKAGKRTVECIDRN--FYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
CP CSC V+C R + ++P +DT L L+ NN+ L + +
Sbjct: 2 CPAPCSCA----GTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDAL--P 55
Query: 81 NIQKLYLR 88
++ +L
Sbjct: 56 ALRTAHLG 63
Score = 29.8 bits (67), Expect = 0.42
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 104 TNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNP 137
+ EL L+ N L+ +P L +P L++ +L NP
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 50.1 bits (120), Expect = 2e-07
Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 12/109 (11%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LD S N I L + +L + +D + LD S N L
Sbjct: 173 TTLDCSFNKITELDVS-----QNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKL 224
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + + + L + + NP+ ++ + + + + I
Sbjct: 225 TEID-VTPLTQLTYFDCSVNPLTELDVSTLSK---LTTLHCIQTDLLEI 269
Score = 49.3 bits (118), Expect = 5e-07
Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 11/109 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L+ +N + L + L + L +D T + ELD N
Sbjct: 109 TYLNCDTNKLTKLDVS-----QNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKK 160
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
T + L +++ + N+I+ + ++ I +
Sbjct: 161 ITKLDVTPQTQLTTLDCSF---NKITELDVSQNKLLNRLNCDTNNITKL 206
Score = 47.8 bits (114), Expect = 1e-06
Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 11/109 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LD +++I + I +T + KL + +D TN+ L N L
Sbjct: 45 TSLDCHNSSITDM-TGIE---KLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKL 97
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + + + L +N N+++ P + Y++ + + I
Sbjct: 98 TNLD-VTPLTKLTYLNCDT---NKLTKLDVSQNPLLTYLNCARNTLTEI 142
Score = 47.0 bits (112), Expect = 3e-06
Identities = 13/109 (11%), Positives = 32/109 (29%), Gaps = 11/109 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
D S N + L + + L+ + L +D T +
Sbjct: 236 TYFDCSVNPLTELDVSTL-----SKLTTLHCIQTDLLEID---LTHNTQLIYFQAEGCRK 287
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + L ++ I+ P + Y+ ++N ++ +
Sbjct: 288 IKELDVTHNTQLYLLDCQA---AGITELDLSQNPKLVYLYLNNTELTEL 333
Score = 43.5 bits (103), Expect = 4e-05
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 8/93 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+LD + I E+ L + LYL +L +D T + L + +
Sbjct: 300 YLLDCQAAGI----TELDLS-QNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHI 351
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQST 149
S+ IP L + A + + +
Sbjct: 352 QDFSSVGKIPALNNNFEAEGQTITMPKETLTNN 384
Score = 42.4 bits (100), Expect = 9e-05
Identities = 8/85 (9%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQ 140
N +++ D + + + LD ++ ++ + + + L + N
Sbjct: 19 NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTS---NN 75
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTI 165
I++ + Y+ + ++ +
Sbjct: 76 ITTLDLSQNTNLTYLACDSNKLTNL 100
Score = 41.6 bits (98), Expect = 1e-04
Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L +SNNI L Q TN+ L KL +D +T + L+ N L
Sbjct: 67 TKLICTSNNITTLD---LSQN--TNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKL 118
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + P L +N A N ++ + +D + T
Sbjct: 119 TKLDVSQ-NPLLTYLNCAR---NTLTEIDVSHNTQLTELDCHLNKKITK 163
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 46.2 bits (110), Expect = 2e-06
Identities = 17/113 (15%), Positives = 46/113 (40%), Gaps = 18/113 (15%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
++L L N I ++ L +++L++ ++ + + N+ L +S+N +
Sbjct: 73 RILSLGRNLIKKIEN---LDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKI 127
Query: 117 STVPSLIYI---PYLKSINLAHNPINQISSYSFQST----------PGIRYID 156
+ + + L+ + LA NP+ + ++ P ++ +D
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
Score = 42.0 bits (99), Expect = 5e-05
Identities = 18/87 (20%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L LS+NNI + L G+ N++ L L + ++ +++ ++EL +S N +
Sbjct: 51 KHLALSTNNIEKIS---SLS-GMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQI 105
Query: 117 STVPSLIYIPYLKSINLAHNPINQISS 143
+++ + + L+ + +++N I
Sbjct: 106 ASLSGIEKLVNLRVLYMSNNKITNWGE 132
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 12/95 (12%)
Query: 71 KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKS 130
+++ L I I+K+ D + L LS N + + SL + L+
Sbjct: 26 EKVELHGMIPPIEKM-----------DATLSTLKACKHLALSTNNIEKISSLSGMENLRI 74
Query: 131 INLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
++L N I +I + + + +S QI ++
Sbjct: 75 LSLGRNLIKKIENLD-AVADTLEELWISYNQIASL 108
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 47.6 bits (114), Expect = 2e-06
Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 57 QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV------TNMDEL 109
+VLDLS+N+I+ L G ++ L + K+ G N++ L
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS--------GDVDVSRCVNLEFL 205
Query: 110 DLSDNLLS-TVPSLIYIPYLKSINLAHNPIN-QISSYSFQSTPGIRYIDMSNCQI 162
D+S N S +P L L+ ++++ N ++ S + + ++ +++S+ Q
Sbjct: 206 DVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQF 259
Score = 44.1 bits (105), Expect = 3e-05
Identities = 17/111 (15%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE---FVDDRAFRGVTNMDELDLSD 113
+ L++SSN ++ ++ + + +++ L L + V G + L +S
Sbjct: 129 KFLNVSSNTLD-FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187
Query: 114 NLLSTVPSLIYIPYLKSINLAHNPIN-QISSYSFQSTPGIRYIDMSNCQIH 163
N +S + L+ ++++ N + I ++++D+S ++
Sbjct: 188 NKISGDVDVSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLS 236
Score = 43.0 bits (102), Expect = 6e-05
Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 10/114 (8%)
Query: 57 QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLE-FVDDRAFRGVTNMDELDLSDN 114
LDLS N+ + + ++ L L + + + LDLS N
Sbjct: 297 TGLDLSGNHFYGAVPPFFG---SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 115 LLS-TVPSLIY--IPYLKSINLAHNPIN-QISSYSFQST-PGIRYIDMSNCQIH 163
S +P + L +++L+ N + I Q+ ++ + + N
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Score = 41.0 bits (97), Expect = 3e-04
Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 6/110 (5%)
Query: 57 QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
LDLSSNN + + + Q +Q+LYL+ + + L LS N
Sbjct: 371 LTLDLSSNNFSGPILPNLC-QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 116 LS-TVP-SLIYIPYLKSINLAHNPIN-QISSYSFQSTPGIRYIDMSNCQI 162
LS T+P SL + L+ + L N + +I + + + +
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ-ELMYVKTLETLILDFNDL 478
Score = 40.7 bits (96), Expect = 4e-04
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ LD+SSNN + + + +Q L + KL RA T + L++S N
Sbjct: 203 EFLDVSSNNFSTGIPFLG---DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 117 S-TVPSLIYIPYLKSINLAHNPIN-QISSYSFQSTPGIRYIDMSNCQIH 163
+P L + L+ ++LA N +I + + + +D+S +
Sbjct: 260 VGPIPPLP-LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307
Score = 37.2 bits (87), Expect = 0.004
Identities = 17/115 (14%), Positives = 45/115 (39%), Gaps = 11/115 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL--EFVDDRAFRGVTNMDELDLSDN 114
+ L LS+++ + + ++ L L + L + + + L++S N
Sbjct: 80 ESLFLSNSH---INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN 136
Query: 115 LLS---TVPSLIYIPYLKSINLAHNPINQ---ISSYSFQSTPGIRYIDMSNCQIH 163
L V + + L+ ++L+ N I+ + ++++ +S +I
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191
Score = 35.3 bits (82), Expect = 0.021
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 47 TIPEGIDLDTQVLDLS-SNNINVLQKEIFLQMG-ITNIQKLYLRKCKLEFVDDRAFRGVT 104
I D + + N+ Q Q+ ++ + F
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 105 NMDELDLSDNLLS-TVP-SLIYIPYLKSINLAHN 136
+M LD+S N+LS +P + +PYL +NL HN
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666
Score = 32.6 bits (75), Expect = 0.15
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMG-ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
L LS N L I +G ++ ++ L L LE + V ++ L L N
Sbjct: 421 VSLHLSFNY---LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 116 LS-TVP-SLIYIPYLKSINLAHNPIN-QISSYSFQSTPGIRYIDMSNCQIH 163
L+ +P L L I+L++N + +I + + +SN
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPK-WIGRLENLAILKLSNNSFS 527
Score = 32.2 bits (74), Expect = 0.18
Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 12/108 (11%)
Query: 57 QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
LDL++N N + +F Q + + + E + NL
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQS-------GKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593
Query: 116 LSTV----PSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSN 159
L L + N+ +S +F + + ++DMS
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641
Score = 31.4 bits (72), Expect = 0.29
Identities = 13/63 (20%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 104 TNMDELDLSDNLLS-TVPSLIYIPYLKSINLAHNPIN-QISS-YSFQSTPGIRYIDMSNC 160
T ++ L LS++ ++ +V L S++L+ N ++ +++ S S G++++++S+
Sbjct: 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN 136
Query: 161 QIH 163
+
Sbjct: 137 TLD 139
Score = 31.0 bits (71), Expect = 0.49
Identities = 8/92 (8%), Positives = 30/92 (32%), Gaps = 4/92 (4%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
TIP + Q +++N I + G+ + + + ++
Sbjct: 553 TIPAAMFK--QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610
Query: 107 DELDLSDNLLS-TVPSLIYI-PYLKSINLAHN 136
+ +++ + + +++++N
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642
Score = 29.1 bits (66), Expect = 1.8
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 104 TNMDELDLSDNLLS-TVP-SLIYIPYLKSINLAHN 136
++ LDLS N L +P ++ + L I+L++N
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
Score = 28.7 bits (65), Expect = 2.6
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 108 ELDLSDNLLSTV-----PSLIYIPYLKSINLAHNPIN-QISSYSFQSTPGIRYIDMSNCQ 161
+DLS L+ SL+ + L+S+ L+++ IN +S F+ + + +D+S
Sbjct: 54 SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS--GFKCSASLTSLDLSRNS 111
Query: 162 IH 163
+
Sbjct: 112 LS 113
Score = 27.6 bits (62), Expect = 5.6
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 22/93 (23%)
Query: 57 QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV--------TNMD 107
+ LS+N + + K I + N+ L L G ++
Sbjct: 493 NWISLSNNRLTGEIPKWIG---RLENLAILKLSNNSFS--------GNIPAELGDCRSLI 541
Query: 108 ELDLSDNLLS-TVPS-LIYIPYLKSINLAHNPI 138
LDL+ NL + T+P+ + + N
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 45.1 bits (108), Expect = 4e-06
Identities = 9/86 (10%), Positives = 25/86 (29%), Gaps = 5/86 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L + L+ + + KL +L + A + +L L
Sbjct: 76 SKLQEIYQELTRLKAAVG---ELPEKSKLQEIYQELTELKA-AVGELPEKSKLQEIYQEL 131
Query: 117 STVPSLI-YIPYLKSINLAHNPINQI 141
+ + + + +P + + +
Sbjct: 132 TQLKAAVGELPDQSKQQQIYQELTDL 157
Score = 44.4 bits (106), Expect = 6e-06
Identities = 10/110 (9%), Positives = 34/110 (30%), Gaps = 6/110 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L + L+ + + KL +L + A + +L L
Sbjct: 7 SKLQEIYQELTRLKAAVG---ELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQEL 62
Query: 117 STVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + + + +P + + + ++ + + P + ++ +
Sbjct: 63 TRLKAAVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTEL 111
Score = 36.7 bits (86), Expect = 0.002
Identities = 9/80 (11%), Positives = 22/80 (27%), Gaps = 11/80 (13%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L + L+ + + KL +L + A + + + L
Sbjct: 99 SKLQEIYQELTELKAAVG---ELPEKSKLQEIYQELTQLKA-AVGELPDQSKQQQIYQEL 154
Query: 117 STVPSLIYIPYLKSINLAHN 136
+ + + L H+
Sbjct: 155 TDLKTAF-------ERLGHH 167
Score = 32.0 bits (74), Expect = 0.089
Identities = 4/63 (6%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 104 TNMDELDLSDNLLSTVPSLI-YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQI 162
+L L+ + + + +P + + + ++ + + P + ++
Sbjct: 4 PEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQEL 62
Query: 163 HTI 165
+
Sbjct: 63 TRL 65
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 44.6 bits (106), Expect = 1e-05
Identities = 17/130 (13%), Positives = 47/130 (36%), Gaps = 6/130 (4%)
Query: 36 RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFV 95
T+ P+ +T +L ++ + + +I ++ ++ V
Sbjct: 1 ETITVSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQN----ELNSIDQIIANNSDIKSV 56
Query: 96 DDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYI 155
+ + N+ L L N L + +L + L + L N + + + F ++ +
Sbjct: 57 Q--GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114
Query: 156 DMSNCQIHTI 165
+ Q+ ++
Sbjct: 115 VLVENQLQSL 124
Score = 43.5 bits (103), Expect = 3e-05
Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 36/148 (24%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDL-----------------------DTQ 57
P + ++ +L + +
Sbjct: 11 QIFPDDAFAE----TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVR 66
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
L L N ++ + +TN+ L L +L+ + + F +TN+ EL L +N L
Sbjct: 67 YLALGGNKLHDI--SAL--KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122
Query: 118 TVPSLIY--IPYLKSINLAHNPINQISS 143
++P ++ + L +NLAH NQ+ S
Sbjct: 123 SLPDGVFDKLTNLTYLNLAH---NQLQS 147
Score = 40.8 bits (96), Expect = 2e-04
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 37 TVECIDRNFYTIPEGI-DL--DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE 93
+ ++ ++P+G+ D + L+L+ N + L K +F ++ TN+ +L L +L+
Sbjct: 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL--TNLTELDLSYNQLQ 170
Query: 94 FVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+ + F +T + +L L N L +VP ++ + L+ I L NP
Sbjct: 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216
Score = 38.8 bits (91), Expect = 9e-04
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
+ L L+ N + L +F +TN+++L L + +L+ + D F +TN+ L+L+ N
Sbjct: 86 NLTYLILTGNQLQSLPNGVF--DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 115 LLSTVPS 121
L ++P
Sbjct: 144 QLQSLPK 150
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 40.7 bits (96), Expect = 3e-04
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 59 LDLSSNNINVLQK--EIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ + L+ ++ L LR L D ++++ + + L
Sbjct: 58 PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGL 116
Query: 117 STVPSLI-YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNC 160
+P + L+++ LA NP+ + + S S +R + + C
Sbjct: 117 MELPDTMQQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRAC 160
Score = 39.2 bits (92), Expect = 7e-04
Identities = 22/114 (19%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLE--------FVDDRAFRGVTNMD 107
+ L L+ N + L I + +++L +R C +L +G+ N+
Sbjct: 130 ETLTLARNPLRALPASIA---SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186
Query: 108 ELDLSDNLLSTVPSLI-YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNC 160
L L + ++P+ I + LKS+ + ++P++ + + P + +D+ C
Sbjct: 187 SLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGC 239
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 39.1 bits (92), Expect = 9e-04
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 47 TIPEGI-DLDTQVLDLSSNNINVLQKEIFLQMG-ITNIQKLYLRKCKLEFVDDRAFRGVT 104
IP +L+ +DLS N L+ + + G N QK++L K L F D
Sbjct: 189 KIPPTFANLNLAFVDLSRNM---LEGDASVLFGSDKNTQKIHLAKNSLAF-DLGKVGLSK 244
Query: 105 NMDELDLSDNLLS-TVP-SLIYIPYLKSINLAHN 136
N++ LDL +N + T+P L + +L S+N++ N
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Score = 34.0 bits (79), Expect = 0.037
Identities = 17/114 (14%), Positives = 36/114 (31%), Gaps = 23/114 (20%)
Query: 57 QVLDLSSNNIN-VLQKEIFLQMGITN-IQKLYLRKCKL------EFVDDRAFRGVTNMDE 108
+ N I+ + + + + + +L F N+
Sbjct: 152 VGITFDGNRISGAIPDSYG---SFSKLFTSMTISRNRLTGKIPPTF-------ANLNLAF 201
Query: 109 LDLSDNLLS-TVPSLIY-IPYLKSINLAHNPIN-QISSYSFQSTPGIRYIDMSN 159
+DLS N+L L + I+LA N + + + + +D+ N
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRN 253
Score = 27.1 bits (61), Expect = 6.5
Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 34/123 (27%)
Query: 57 QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV--------TNMD 107
L ++ N++ + + I + L L G N+
Sbjct: 104 HYLYITHTNVSGAIPDFL---SQIKTLVTLDFSYNALS--------GTLPPSISSLPNLV 152
Query: 108 ELDLSDNLLS-TVP-SLIYIPYL-KSINLAHN----PI-NQISSYSFQSTPGIRYIDMSN 159
+ N +S +P S L S+ ++ N I ++ + ++D+S
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA------FVDLSR 206
Query: 160 CQI 162
+
Sbjct: 207 NML 209
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 37.2 bits (87), Expect = 0.004
Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 18/122 (14%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD----DRAFRGVTNMDELDLS 112
Q LD+ ++ + L + Q + L C L A R + EL+L
Sbjct: 6 QSLDIQCEELSDARWAELLP-LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64
Query: 113 DNLL--STVPSLIYI-----PYLKSINLAHNPI-----NQISSYSFQSTPGIRYIDMSNC 160
N L V ++ ++ ++L + + +SS + ++ P ++ + +S+
Sbjct: 65 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDN 123
Query: 161 QI 162
+
Sbjct: 124 LL 125
Score = 34.6 bits (80), Expect = 0.030
Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 24/127 (18%)
Query: 57 QVLDLSSNNIN-----VLQKEIFLQMGITNIQKLYLRKCKLEFVDDR----AFRGVTNMD 107
L+L SN + + + LQ IQKL L+ C L R + +
Sbjct: 59 AELNLRSNELGDVGVHCVLQG--LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116
Query: 108 ELDLSDNLLSTVPSLIYI--------PYLKSINLAHNPINQIS----SYSFQSTPGIRYI 155
EL LSDNLL L + L+ + L + ++ S + ++ P + +
Sbjct: 117 ELHLSDNLLGD-AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 175
Query: 156 DMSNCQI 162
+SN I
Sbjct: 176 TVSNNDI 182
Score = 33.4 bits (77), Expect = 0.073
Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 18/125 (14%)
Query: 57 QVLDLSSNNIN---VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF----RGVTNMDEL 109
Q L LS N + + L ++KL L C L R + EL
Sbjct: 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 175
Query: 110 DLSDNLLSTV------PSLIYIPY-LKSINLAHNPINQIS----SYSFQSTPGIRYIDMS 158
+S+N ++ L P L+++ L + + S +R + +
Sbjct: 176 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235
Query: 159 NCQIH 163
+ ++
Sbjct: 236 SNKLG 240
Score = 31.1 bits (71), Expect = 0.35
Identities = 8/66 (12%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 104 TNMDELDLSDNLLS--TVPSLI-YIPYLKSINLAHNPINQIS----SYSFQSTPGIRYID 156
++ LD+ LS L+ + + + L + + S + + P + ++
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 157 MSNCQI 162
+ + ++
Sbjct: 63 LRSNEL 68
Score = 29.2 bits (66), Expect = 1.6
Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 22/126 (17%)
Query: 57 QVLDLSSNNI-----NVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV----TNMD 107
+ L L+ N + +L + L ++ L+++ C F V +
Sbjct: 287 KELSLAGNELGDEGARLLCET--LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL 344
Query: 108 ELDLSDNLLST--VPSL-----IYIPYLKSINLAHNPINQIS----SYSFQSTPGIRYID 156
EL +S+N L V L L+ + LA ++ S + + + +R +D
Sbjct: 345 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404
Query: 157 MSNCQI 162
+SN +
Sbjct: 405 LSNNCL 410
Score = 27.2 bits (61), Expect = 6.1
Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 22/126 (17%)
Query: 57 QVLDLSSNNI-----NVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV----TNMD 107
+ L L SN + L L + ++ L++ +C + V ++
Sbjct: 230 RELALGSNKLGDVGMAELCPG--LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287
Query: 108 ELDLSDNLL--STVPSLI-----YIPYLKSINLAHNPINQISSYSF----QSTPGIRYID 156
EL L+ N L L L+S+ + F + +
Sbjct: 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347
Query: 157 MSNCQI 162
+SN ++
Sbjct: 348 ISNNRL 353
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 36.6 bits (85), Expect = 0.007
Identities = 20/137 (14%), Positives = 38/137 (27%), Gaps = 31/137 (22%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGI--------TNIQKLYLRKCKLEFVDDRAF----RGVT 104
++ + S ++ EI + + + + L T
Sbjct: 63 EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122
Query: 105 NMDELDLSDNLLS---------------TVPSLIYIPYLKSINLAHNPINQIS----SYS 145
++ L L +N L P L+SI N + S + +
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182
Query: 146 FQSTPGIRYIDMSNCQI 162
FQS + + M I
Sbjct: 183 FQSHRLLHTVKMVQNGI 199
Score = 33.1 bits (76), Expect = 0.082
Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 24/128 (18%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGI---TNIQKLYLRKCKLEFVDD------RAFRGVTNMD 107
+ + N I E L G+ ++ L L+ A + N+
Sbjct: 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT--HLGSSALAIALKSWPNLR 247
Query: 108 ELDLSDNL--------LSTVPSLIYIPYLKSINLAHNPINQ-----ISSYSFQSTPGIRY 154
EL L+D L + S + L+++ L +N I + + + P + +
Sbjct: 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307
Query: 155 IDMSNCQI 162
++++ +
Sbjct: 308 LELNGNRF 315
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.011
Identities = 37/290 (12%), Positives = 77/290 (26%), Gaps = 98/290 (33%)
Query: 53 DLDTQ-VLDLSSNNINVLQKEIF---LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDE 108
+ D + V D+ + +L KE + + + + V E
Sbjct: 32 NFDCKDVQDMPKS---ILSKEEIDHIIMSK-DAVSGTLRL---FWTLLSKQEEMVQKFVE 84
Query: 109 LDLSDN---LLSTV------PSLIYIPYLKSINLAHN--------------PINQI---- 141
L N L+S + PS++ Y++ + +N P ++
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 142 ---------------------------SSYSFQSTP--GIRYIDMSNCQIHT---IYSEA 169
SY Q I ++++ NC +
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 170 FYVMVLPGSNLTLDCRVQSATPCRIMWSINRK--------------IYDHVNWNSNKI-- 213
+ P N T S RI + +V N+
Sbjct: 205 LLYQIDP--NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNAKAWNA 261
Query: 214 -NIKEET-VLSKDNSYLSVFSGGVDLAAASSPGGENIYDQKSTLTVFDTE 261
N+ + + ++ D +A++ ++ TLT + +
Sbjct: 262 FNLSCKILLTTRFKQV-------TDFLSAATTTHISLDHHSMTLTPDEVK 304
Score = 34.1 bits (77), Expect = 0.051
Identities = 39/265 (14%), Positives = 77/265 (29%), Gaps = 80/265 (30%)
Query: 12 LTLLASVTQASC-----------PLGCSCKWKAGKRTVECIDR-NFYTIPEGIDLD--TQ 57
+LL P S + + + + + + ++ D T
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSI---IAESIRDGLATWDNW---KHVNCDKLTT 357
Query: 58 VLDLSSNNIN-VLQKEIFLQMGI----TNI--QKLYLRKCKLEFVDDRAFRGVTNMDELD 110
+++ S N + +++F ++ + +I L L + D +++L
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV-----VNKL- 411
Query: 111 LSDNLL--STVPSLIYIP--YL----KSINLA--HNPINQISSYSF-----QSTPGIRYI 155
+L+ S I IP YL K N H I + Y+ Y+
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI--VDHYNIPKTFDSDDLIPPYL 469
Query: 156 DMSNCQIHTIYSEAFYVMV---LPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNK 212
D Y FY + L ++ R ++ + K
Sbjct: 470 DQ--------Y---FYSHIGHHLKNIEHPE------------RMTLFRMVFLDFRFLEQK 506
Query: 213 INIKEETVLSKDNSYLSVFSGGVDL 237
I + T + S L+ L
Sbjct: 507 I-RHDSTAWNASGSILNTLQ---QL 527
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 35.4 bits (81), Expect = 0.013
Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 15/122 (12%)
Query: 53 DLDTQVLDLSS--NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110
D Q LDL ++ +++ + I + + + LR + + L+
Sbjct: 126 DGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENI---------PELLSLN 176
Query: 111 LSDNLLSTVPSLIYI----PYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY 166
LS+N L + + I P LK +NL+ N + + + + + +
Sbjct: 177 LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTF 236
Query: 167 SE 168
+
Sbjct: 237 RD 238
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 33.8 bits (77), Expect = 0.053
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRK 201
L G+NL L C S + W IN
Sbjct: 569 SSYLSGANLNLSCHSASNPSPQYSWRINGI 598
Score = 30.7 bits (69), Expect = 0.49
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 174 VLPGSNLTLDCRVQSATPCRIMWSINRKIYDH 205
PG NL+L C S P + W I+ I H
Sbjct: 393 YRPGVNLSLSCHAASNPPAQYSWLIDGNIQQH 424
Score = 30.3 bits (68), Expect = 0.70
Identities = 6/61 (9%), Positives = 15/61 (24%)
Query: 174 VLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSG 233
V G + L W ++ + I ++ T + ++
Sbjct: 11 VAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPN 70
Query: 234 G 234
Sbjct: 71 A 71
Score = 28.0 bits (62), Expect = 3.8
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKI 202
G NL L C S P + W +N
Sbjct: 213 TSYRSGENLNLSCHAASNPPAQYSWFVNGTF 243
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 33.0 bits (75), Expect = 0.054
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 164 TIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSK 223
T++S V + + + L C + R+ W ++ + +NKI E ++
Sbjct: 6 TVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTF 65
Query: 224 DNSYLSVFS-----GGVDLAAASSPGGENIYDQKSTLTVF 258
+ ++ S G S GG + + K L V
Sbjct: 66 LPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL 105
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.060
Identities = 52/327 (15%), Positives = 86/327 (26%), Gaps = 143/327 (43%)
Query: 36 RTVECIDRNFYTIPEGIDL-----------DTQVLD---LSSNNINVLQKEIFLQMGITN 81
RT ++ F +G+++ D L +S I V+Q
Sbjct: 200 RTTLDAEKVF---TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ---LAH----- 248
Query: 82 IQKLYLRKCKL------EFVDDRAFRGVTN--------------MDELDLSDNLLSTVPS 121
Y+ KL E +G T ++ +
Sbjct: 249 ----YVVTAKLLGFTPGELRS--YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 122 LIYI--------PYLKSINLAHNP-INQISSYSFQSTP----GIR---------YIDMSN 159
L +I P N + P I + S + + P I Y++ +N
Sbjct: 303 LFFIGVRCYEAYP-----NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 160 CQIHTIYSEAFYV--------MVLPGS-----NLTLDCRVQSATP----CRIMWSINRKI 202
+ + + +V+ G L L R A RI +S RK+
Sbjct: 358 SHLPA--GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS-ERKL 414
Query: 203 ----------------Y--------------DHVNWNSNKINIKEETVLSKDNSYLSVFS 232
++V++N+ I I V+
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI-------------PVYD 461
Query: 233 --GGVDLAAASSPGGENIYDQKSTLTV 257
G DL S E I D L V
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPV 488
Score = 29.6 bits (66), Expect = 1.2
Identities = 42/270 (15%), Positives = 87/270 (32%), Gaps = 90/270 (33%)
Query: 39 ECID--RNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFV 95
+ + R+ Y + V DL + L + L + +K++ + + E++
Sbjct: 168 DYFEELRDLYQTYHVL-----VGDLIKFSAETLSE---LIRTTLDAEKVFTQGLNILEWL 219
Query: 96 DDRAFRGVTNMDELDLSDNLLSTVP-S--LI-------YIPYLKSINLAHNPINQISSYS 145
++ + + L ++P S LI Y+ K + + +
Sbjct: 220 ENPSNTP---------DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 146 FQSTPGI---RYIDMSN------CQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMW 196
+ G+ I ++ + + F++ G R A P +
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI----G------VRCYEAYPNTSLP 320
Query: 197 SINRKIYDHVNWNSNKI--------NIKEETV---LSKDNSYLS---------------- 229
+ D + N+ + N+ +E V ++K NS+L
Sbjct: 321 PSILE--DSLE-NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377
Query: 230 VFSG------GVD--LAAASSPGGENIYDQ 251
V SG G++ L A +P G DQ
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGL---DQ 404
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 32.0 bits (72), Expect = 0.061
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 8/93 (8%)
Query: 172 VMVLPGSNLTLDCRVQS--ATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLS 229
+ GS+++ C S +P W + + + + L + + L
Sbjct: 20 QSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILR 79
Query: 230 VFS-----GGVDLAAASSPGGENIYDQKSTLTV 257
+ + G S+ G Y + LT+
Sbjct: 80 LRNVEFTSEGXYQCVISNHFGS-SYSVXAXLTI 111
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 32.5 bits (74), Expect = 0.072
Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 14/91 (15%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM-------DEL 109
Q +D + + I G+ ++K+ L KC +++D ++ + E+
Sbjct: 64 QAIDATDSCIM--SIGFDHMEGLQYVEKIRLCKCH--YIEDGCLERLSQLENLQKSMLEM 119
Query: 110 DLSDNLLSTVPSLIYI---PYLKSINLAHNP 137
++ T +I + LK + L+ P
Sbjct: 120 EIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 33.4 bits (76), Expect = 0.076
Identities = 15/124 (12%), Positives = 40/124 (32%), Gaps = 14/124 (11%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD---RAFRGVTNMDELDLSD 113
+ + ++ L + + +++ L L KC F D + L + +
Sbjct: 115 KSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS-GFTTDGLLSIVTHCRKIKTLLMEE 173
Query: 114 NLLST--VPSLIYI----PYLKSINLAHNPINQISSYS----FQSTPGIRYIDMSNCQIH 163
+ S L + L+ +N +IS ++ + + + + +I
Sbjct: 174 SSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233
Query: 164 TIYS 167
+
Sbjct: 234 ELVG 237
Score = 30.3 bits (68), Expect = 0.78
Identities = 14/139 (10%), Positives = 41/139 (29%), Gaps = 16/139 (11%)
Query: 80 TNIQKLYLRKCKLEFVDDRAF----RGVTNMDELDLSDNLLSTVPSLIYI----PYLKSI 131
+++ + + D + N+ + L + L+ P L+ +
Sbjct: 436 KKLRRFAFYLRQ-GGLTDLGLSYIGQYSPNVRWMLLGYVGE-SDEGLMEFSRGCPNLQKL 493
Query: 132 NLAHNPINQISSYSF-QSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTL----DCRV 186
+ ++ + + P +RY+ + + ++ + M P N+ L
Sbjct: 494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA-SMTGQDLMQMARPYWNIELIPSRRVPE 552
Query: 187 QSATPCRIMWSINRKIYDH 205
+ I +
Sbjct: 553 VNQQGEIREMEHPAHILAY 571
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 32.8 bits (75), Expect = 0.095
Identities = 16/122 (13%), Positives = 42/122 (34%), Gaps = 18/122 (14%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV-----TNMDELDL 111
++L+S ++ L + +KL L+ L + R + + L L
Sbjct: 104 DEVNLASCQLDPAGLRTLLPV-FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRL 162
Query: 112 SDNLLSTV------PSLIYIPYLKSINLAHNPI-----NQISSYSFQSTPGIRYIDMSNC 160
S+N L+ L + ++L H + +++ ++ ++++
Sbjct: 163 SNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYN 221
Query: 161 QI 162
Sbjct: 222 GA 223
Score = 32.8 bits (75), Expect = 0.11
Identities = 15/120 (12%), Positives = 41/120 (34%), Gaps = 17/120 (14%)
Query: 59 LDLSSNNINVLQKEIF---LQMGITNIQKLYLRKCKLEFVDDRAF-RGVTNMDELDLSDN 114
L+L+ + ++ + L G + ++ L C+L+ R +L L N
Sbjct: 77 LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136
Query: 115 LLSTVPSLIYI--------PYLKSINLAHNPINQIS----SYSFQSTPGIRYIDMSNCQI 162
L + + + ++ L++NP+ + ++ + + +
Sbjct: 137 SLG-PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL 195
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 32.1 bits (72), Expect = 0.12
Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
Query: 162 IHTIYSEAFYVMVLPGSNLTLDCRVQSATPCR--IMWSINRKIYDHVNWNSNKINIKEET 219
+ S + + + G L L+C ++ W + H + + + +
Sbjct: 105 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 164
Query: 220 VLSKDNSYLSVFS 232
+ K S L++
Sbjct: 165 EMKKFLSTLTIDG 177
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 30.5 bits (69), Expect = 0.13
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSIN 199
++V PG L L CR++ I W +
Sbjct: 19 LLVHPGDLLQLRCRLRDDVQ-SINWLRD 45
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 30.4 bits (69), Expect = 0.15
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSIN 199
+V PG L L CR++ I W +
Sbjct: 13 FLVHPGDLLQLRCRLRDDVQ-SINWLRD 39
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 30.5 bits (68), Expect = 0.20
Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 161 QIHTIY-SEAFYVMVLPGSNLTLDCRVQSA--TPCRIMWSINRKIYDHVNWNSNKINIKE 217
+I+ + S + + + G L L+C ++ W + H + + +
Sbjct: 6 RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS 65
Query: 218 ETVLSKDNSYLSV 230
+ + K S L++
Sbjct: 66 GSEMKKFLSTLTI 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 31.6 bits (72), Expect = 0.24
Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 25/130 (19%)
Query: 57 QVLDLSSNNINVLQ-KEI--FLQMGITNIQKLYLRKCKLEFVDD------RAFRGV-TNM 106
L+L NN+ E+ FL ++ L L L F + ++
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG--LKSYAELAYIFSSIPNHV 227
Query: 107 DELDLSDNLLSTV------PSLIYIPYLKSINLAHNPINQIS-------SYSFQSTPGIR 153
L+L N L + +L+++ L ++ + +S +F + I
Sbjct: 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287
Query: 154 YIDMSNCQIH 163
+D + +IH
Sbjct: 288 LVDKNGKEIH 297
Score = 31.2 bits (71), Expect = 0.28
Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 20/126 (15%)
Query: 57 QVLDLSSNNINVLQ-KEIF--LQMGITNIQKLYLRKCKLEFVDDRAFRGV-----TNMDE 108
LDLS NN+ + E+ ++ L L L F + + N+
Sbjct: 25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84
Query: 109 LDLSDNLLST------VPSLIYIPY-LKSINLAHNPI-----NQISSYSFQSTPGIRYID 156
L+LS N LS V +L IP+ + ++L N ++ I ++
Sbjct: 85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLN 144
Query: 157 MSNCQI 162
+ +
Sbjct: 145 LRGNDL 150
Score = 28.1 bits (63), Expect = 2.8
Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 20/126 (15%)
Query: 57 QVLDLSSNNINVLQKEIF---LQMGITNIQKLYLRKCKLEFVDDRAFRGV-----TNMDE 108
L+LS N++ + L N+ L L L + +
Sbjct: 54 TSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITV 113
Query: 109 LDLSDNLLSTV------PSLIYIP-YLKSINLAHNPINQIS----SYSFQSTP-GIRYID 156
LDL N S+ + +P + S+NL N + S + P + ++
Sbjct: 114 LDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173
Query: 157 MSNCQI 162
+ +
Sbjct: 174 LRGNNL 179
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 31.2 bits (70), Expect = 0.26
Identities = 20/106 (18%), Positives = 29/106 (27%), Gaps = 31/106 (29%)
Query: 164 TIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSK 223
+ A +V G N+TL C V W+ RK
Sbjct: 183 NVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRK---------------------- 220
Query: 224 DNSYLSVFSGGVDLAAASSPGGENIYDQKSTLTVFDTELHTDDGNY 269
G + + + Y +S L + EL D G Y
Sbjct: 221 --------ESGRLVEPVTDFLLDMPYHIRSILHIPSAELE-DSGTY 257
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 30.7 bits (69), Expect = 0.45
Identities = 5/26 (19%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 172 VMVLPGSNLTLDCRVQSATPC-RIMW 196
++ G + L C P +W
Sbjct: 18 LVFGSGDAVELSCPPPGGGPMGPTVW 43
Score = 27.7 bits (61), Expect = 4.0
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWS 197
+ GS++ C+V S I W
Sbjct: 232 QTAVLGSDVEFHCKVYSDAQPHIQWL 257
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 30.3 bits (68), Expect = 0.54
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 164 TIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSK 223
++Y+ V V ++ L C + R+ W + + +++I ++
Sbjct: 3 SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF 62
Query: 224 DNSYLSVFS-----GGVDLAAASSPGGENIYDQKSTLTVF 258
+S ++ S G S GG+N + LTV
Sbjct: 63 SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL 102
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 30.3 bits (67), Expect = 0.54
Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 13/112 (11%)
Query: 161 QIHTIYSEAFYVMVLPGSNLTLDCRVQSA---TPCRIMWSINRKIYDHVNWNSNKINIKE 217
+ T ++E V V G + L C Q A P I W N +
Sbjct: 4 TVRTTHTE---VEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQG 60
Query: 218 ETVLSKDNSYLSVFSGGVDLAAASSPGGENIYDQKSTLTVFDTELHTDDGNY 269
E + ++ G A+ + TL + D G Y
Sbjct: 61 EGLGFVESDSYKESFGDFLGRASVANLAAP------TLRLTHVHP-QDGGRY 105
Score = 29.1 bits (64), Expect = 1.2
Identities = 7/55 (12%), Positives = 18/55 (32%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNS 226
V V G+++T+ C + W +++ + + + S
Sbjct: 146 VQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFS 200
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 30.6 bits (69), Expect = 0.55
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGV----TNMDELDLSD-NLLSTVPSLIYI----PYLKS 130
N+++L LR+ ++ V T++ L++S + +L + P LKS
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215
Query: 131 INLAHNPINQISSYSFQSTPGIRYIDMSNCQIHT 164
+ L + + Q P + +
Sbjct: 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEV 249
Score = 27.6 bits (61), Expect = 5.3
Identities = 13/97 (13%), Positives = 36/97 (37%), Gaps = 14/97 (14%)
Query: 75 LQMGITNIQKLYLRKCKLEFVDDRAF----RGVTNMDELDLSDNLLSTVPSLIYI----P 126
+ ++++L L + D+ F M+ L ++ + + ++
Sbjct: 427 IVEHCKDLRRLSLSGL----LTDKVFEYIGTYAKKMEMLSVAFAGD-SDLGMHHVLSGCD 481
Query: 127 YLKSINLAHNPINQISSYSFQST-PGIRYIDMSNCQI 162
L+ + + P + + S +R + MS+C +
Sbjct: 482 SLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 30.5 bits (68), Expect = 0.63
Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 26/98 (26%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVF 231
+ + G L L+C ++ I ++ W + + ++++D S
Sbjct: 234 IELSVGEKLVLNCTARTELNVGIDFN----------WEYPSSKHQHKKLVNRDLKTQS-- 281
Query: 232 SGGVDLAAASSPGGENIYDQKSTLTVFDTELHTDDGNY 269
G + STLT+ D G Y
Sbjct: 282 -------------GSEMKKFLSTLTIDGVTRS-DQGLY 305
Score = 29.0 bits (64), Expect = 2.1
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEET 219
G ++ + C P +IMW + + + I +K+
Sbjct: 676 QTTSIGESIEVSCTASGNPPPQIMWFKD----NETLVEDSGIVLKDGN 719
Score = 27.4 bits (60), Expect = 6.6
Identities = 8/98 (8%), Positives = 25/98 (25%), Gaps = 16/98 (16%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVF 231
+ +++L C +T + W ++ + + +
Sbjct: 559 MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFS 618
Query: 232 SGGVDLAAASSPGGENIYDQKSTLTVFDTELHTDDGNY 269
+ + + + + L D G+Y
Sbjct: 619 NS---------------TNDILIMELKNASLQ-DQGDY 640
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 29.9 bits (67), Expect = 0.72
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMW 196
VL G + L CR + W
Sbjct: 28 KAVLAGQFVKLCCRATGHPFVQYQW 52
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 29.7 bits (66), Expect = 0.88
Identities = 13/58 (22%), Positives = 19/58 (32%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLS 229
+ V GS + L C V W N + D + + E +K S L
Sbjct: 219 MEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLI 276
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 28.8 bits (64), Expect = 1.0
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWS 197
+ V G LTL C + W
Sbjct: 11 ITVEEGQTLTLKCVTSLRKNSSLQWL 36
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 29.1 bits (65), Expect = 1.0
Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 8/94 (8%)
Query: 172 VMVLPGSNLTLDCRVQ-SATPCRIMWSIN-RKIYDHVNWNSNKINIKEETVLSKDNSYLS 229
+ G TL C++Q P + W + + + + + ++E S L
Sbjct: 12 ITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLR 71
Query: 230 VFS-----GGVDLAAASSPGGENIYDQKSTLTVF 258
+ S G Q + +
Sbjct: 72 ITSLQLSDTGQYQCLVFLGHQT-FVSQPGYVGLE 104
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 29.2 bits (65), Expect = 1.2
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMW 196
V GS+++L+C +
Sbjct: 12 YTVDVGSSVSLECDFDRRECTELEG 36
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 29.1 bits (65), Expect = 1.3
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 174 VLPGSNLTLDCRVQSATPCRIMW 196
+ GS++ C+V S I W
Sbjct: 126 AVLGSDVEFHCKVYSDAQPHIQW 148
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 27.5 bits (61), Expect = 1.6
Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 172 VMVLPGSNLTLDCRVQSATPC-RIMWS 197
V PG+++T C +S +P ++W+
Sbjct: 20 QSVRPGADVTFICTAKSKSPAYTLVWT 46
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 28.9 bits (64), Expect = 1.7
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 14/98 (14%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVF 231
+ G+++ L C + P + KI V W + K+ + + +SV
Sbjct: 24 MYGFIGTDVVLHCSFANPLP-------SVKIT-QVTWQKSTNGSKQNVAIYNPSMGVSVL 75
Query: 232 SGGVDLAAASSPGGENIYDQKSTLTVFDTELHTDDGNY 269
+ + P + T+ + EL D+G Y
Sbjct: 76 APYRERVEFLRPSFTD-----GTIRLSRLEL-EDEGVY 107
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 28.4 bits (63), Expect = 1.8
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMW 196
+L G +LTL + +
Sbjct: 107 THLLQGQSLTLTLESPPGSSPSVQC 131
Score = 27.2 bits (60), Expect = 4.8
Identities = 11/98 (11%), Positives = 21/98 (21%), Gaps = 19/98 (19%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVF 231
V+ G + L C + W + N +
Sbjct: 5 VLGKKGDTVELTCTASQKKSIQFHW------------------KNSNQIKILGNQGSFLT 46
Query: 232 SGGVDLAAASSPGGENIYDQKSTLTVFDTELHTDDGNY 269
G L + L + + ++ D Y
Sbjct: 47 KGPSKLNDRADSRRSLWDQGNFPLIIKNLKI-EDSDTY 83
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 28.7 bits (64), Expect = 1.9
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMW 196
+ G ++ C+V S I W
Sbjct: 128 ASTVVGGDVEFVCKVYSDAQPHIQW 152
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 28.5 bits (63), Expect = 1.9
Identities = 15/107 (14%), Positives = 29/107 (27%), Gaps = 30/107 (28%)
Query: 164 TIYSEAFYVMVLPGSNLTLDCRVQSA-TPCRIMWSINRKIYDHVNWNSNKINIKEETVLS 222
+ ++ G T+ C ++ T MW H
Sbjct: 190 VVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQH----------------- 232
Query: 223 KDNSYLSVFSGGVDLAAASSPGGENIYDQKSTLTVFDTELHTDDGNY 269
+ S G+ Y+++ TLT+ + D G +
Sbjct: 233 -----------IAQVKHNSWHRGDFNYERQETLTISSARVD-DSGVF 267
Score = 27.8 bits (61), Expect = 4.4
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 164 TIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETV 220
+I+ ++V G L+L C + W+ + V N+ ++
Sbjct: 14 SIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVENKKNEWIQEKAEA 66
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 27.3 bits (61), Expect = 2.1
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 174 VLPGSNLTLDCRVQSATPCRIMWSIN 199
++PGS L L C + W N
Sbjct: 15 LMPGSTLVLQCVAVGSPIPHYQWFKN 40
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 28.7 bits (64), Expect = 2.3
Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNS 226
+ PG ++ L C I W ++ K N+++ + + ++ D
Sbjct: 439 ETMEPGPSVFLKCVAGGNPTPEISWELDGKKIA----NNDRYQVGQYVTVNGDVV 489
Score = 27.6 bits (61), Expect = 6.1
Identities = 15/98 (15%), Positives = 26/98 (26%), Gaps = 38/98 (38%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVF 231
++ G L + C V I+W ++ L + VF
Sbjct: 536 KAIVAGETLIVTCPVAGYPIDSIVWE------------------RDNRALPINRKQ-KVF 576
Query: 232 SGGVDLAAASSPGGENIYDQKSTLTVFDTELHTDDGNY 269
G TL + + E ++D Y
Sbjct: 577 PNG-------------------TLIIENVERNSDQATY 595
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 28.1 bits (62), Expect = 2.3
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 172 VMVLPGSNLTLDCRVQ-SATPCRIMWSINRKIYDHVNWNSNKINIKEETVLS 222
S LT+ C V P + W + + + + +++ LS
Sbjct: 114 SQFPDFSVLTVTCTVNAFPHP-HVQWLMPEGVEPAPTAANGGVMKEKDGSLS 164
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 28.5 bits (63), Expect = 2.8
Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 32/126 (25%)
Query: 145 SFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSA-TPCRIMWSINRKIY 203
S S I + + + + ++ G T+ C ++ + W
Sbjct: 194 SVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTW------- 246
Query: 204 DHVNWNSNKINIKEETVLSKDNSYLSVFSGGVDLAAASSPGGENIYDQKSTLTVFDTELH 263
+E + Y S G+ Y++++TLT+ ++
Sbjct: 247 -----------KRENSQTKLQEKYNSWHH------------GDFNYERQATLTISSARVN 283
Query: 264 TDDGNY 269
D G +
Sbjct: 284 -DSGVF 288
Score = 28.1 bits (62), Expect = 3.9
Identities = 11/69 (15%), Positives = 17/69 (24%), Gaps = 7/69 (10%)
Query: 171 YVMVLP-------GSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSK 223
YV P N L C I W + + ++++
Sbjct: 408 YVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGP 467
Query: 224 DNSYLSVFS 232
L V S
Sbjct: 468 PFGKLVVQS 476
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 28.2 bits (63), Expect = 2.9
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 174 VLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEE 218
L G+++ L+C +Q P ++ W +++ + K I E
Sbjct: 396 TLKGADVHLECELQGTPPFQVSWHKDKRELR----SGKKYKIMSE 436
Score = 27.8 bits (62), Expect = 4.4
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEE 218
+ + G + L ++ A P + W ++ + S+ I I
Sbjct: 487 ISTVVGEEVQLQATIEGAEPISVAWFKDKG---EIVRESDNIWISYS 530
Score = 27.8 bits (62), Expect = 4.7
Identities = 3/28 (10%), Positives = 13/28 (46%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSIN 199
+V + +C++ + +++W +
Sbjct: 301 RIVKQDEHTRYECKIGGSPEIKVLWYKD 328
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 27.6 bits (61), Expect = 3.0
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 171 YVMVLPGSNLTLDCRV-QSATPCRIMWSINRKIYDHVNWNSNKINIKEE 218
+ + G N+TL C W N + + N + N +N K E
Sbjct: 13 WNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFE 61
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 28.2 bits (63), Expect = 3.0
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRK 201
+ + G + C+ R+ W+ K
Sbjct: 16 QIGVSGGVASFVCQATGDPKPRVTWNKKGK 45
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 27.9 bits (62), Expect = 3.2
Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 18/118 (15%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV----TNMDELDLS 112
Q L L ++ + +N+ +L L C + A + + + +DEL+LS
Sbjct: 121 QNLSLEGLRLSDPIVNTLAKN--SNLVRLNLSGCS--GFSEFALQTLLSSCSRLDELNLS 176
Query: 113 DNLLSTVPSLIYI-----PYLKSINLAHNPINQISSYSF----QSTPGIRYIDMSNCQ 161
T + + +NL+ + + P + ++D+S+
Sbjct: 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYR-KNLQKSDLSTLVRRCPNLVHLDLSDSV 233
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 28.2 bits (62), Expect = 3.2
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINR 200
+L G +LTL + + R
Sbjct: 106 THLLQGQSLTLTLESPPGSSPSVQCRSPR 134
Score = 28.2 bits (62), Expect = 3.2
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWS 197
VM L C V T ++M S
Sbjct: 291 VMRATQLQKNLTCEVWGPTSPKLMLS 316
Score = 27.5 bits (60), Expect = 5.7
Identities = 11/98 (11%), Positives = 21/98 (21%), Gaps = 19/98 (19%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVF 231
V+ G + L C + W + N +
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHW------------------KNSNQIKILGNQGSFLT 45
Query: 232 SGGVDLAAASSPGGENIYDQKSTLTVFDTELHTDDGNY 269
G L + L + + ++ D Y
Sbjct: 46 KGPSKLNDRADSRRSLWDQGNFPLIIKNLKI-EDSDTY 82
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 27.8 bits (62), Expect = 3.2
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 164 TIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRK 201
+ V + G + T C V P +I W+ + +
Sbjct: 7 FFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNR 44
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 28.0 bits (62), Expect = 3.2
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 21/88 (23%)
Query: 174 VLPGSNLTLDCRVQ-------SATPCRIMWSINRKI-----YDHVNWNSNKINIKEETVL 221
V SN T C ++ I+W N Y +N ++ + T +
Sbjct: 15 VQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTF---TDI 71
Query: 222 SKDNSYLSVFSGGVDLAAASSPGGENIY 249
+ N L+ +N+Y
Sbjct: 72 ASLNIQLTCN------ILTFGQLEQNVY 93
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 27.9 bits (62), Expect = 3.3
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRK 201
V + G L L C V P + W N K
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVSWLKNEK 156
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 27.7 bits (61), Expect = 3.4
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 15/99 (15%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWN-SNKINIKEETVLSKDNSYLSV 230
+ N+T+ C + + P I + W + KE V +
Sbjct: 13 QITPLNDNVTIFCNIFYSQPLNI-------TSMGITWFWKSLTFDKEVKVFEFFGDHQEA 65
Query: 231 FSGGVDLAAASSPGGENIYDQKSTLTVFDTELHTDDGNY 269
F G ++ G ++L + +L + G Y
Sbjct: 66 FRPGAIVSPWRLKSG------DASLRLPGIQL-EEAGEY 97
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 28.1 bits (62), Expect = 3.6
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 165 IYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRK 201
EA V V +++TL V + +W
Sbjct: 51 TVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHS 87
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 26.5 bits (59), Expect = 3.7
Identities = 7/25 (28%), Positives = 8/25 (32%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMW 196
V G N VQS + W
Sbjct: 18 HRVPCGQNTRFILNVQSKPTAEVKW 42
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 27.9 bits (62), Expect = 4.2
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 172 VMVLPGSNLTLDCRVQSATPC-RIMW 196
+ + G N+ L+C +S I W
Sbjct: 31 AVTMRGGNVLLNCSAESDRGVPVIKW 56
Score = 27.1 bits (60), Expect = 6.3
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVL 221
V+ + G + L+C V P W ++ + S K ++ + L
Sbjct: 231 VIAIEGKDAVLECCVSGYPPPSFTWLRGEEV---IQLRSKKYSLLGGSNL 277
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 27.5 bits (61), Expect = 4.7
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSV 230
V G+ + + C V + I W + ++ SN NIK + SYL V
Sbjct: 28 VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPS----SNYSNIKIYN--TPSASYLEV 80
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 26.1 bits (58), Expect = 4.9
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 172 VMVLPGSNLTLDCRVQSA-TPCRIMWSIN-RKIYDHVNWNSNKINIKEE 218
+ G ++ C++++ ++ W R++ NS K I E
Sbjct: 11 AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLE-----NSEKYEITYE 54
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 27.5 bits (61), Expect = 5.0
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 34/99 (34%)
Query: 171 YVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSV 230
G+ + + C V+S P I W + + + +K+ + L
Sbjct: 109 IYYSWEGNPINISCDVKSNPPASIHWRRD-----------------KLVLPAKNTTNLKT 151
Query: 231 FSGGVDLAAASSPGGENIYDQKSTLTVFDTELHTDDGNY 269
+S G K L + T D G Y
Sbjct: 152 YSTGR----------------KMILEIAPTSD-NDFGRY 173
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 27.7 bits (61), Expect = 5.0
Identities = 10/55 (18%), Positives = 17/55 (30%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNS 226
+ L C +S + W + + S + KEE VL +
Sbjct: 149 YFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFG 203
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 27.2 bits (60), Expect = 5.1
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 16/68 (23%)
Query: 160 CQI-HTIYSEAFYVMVL--------------PGSNLTLDCRVQSATPC-RIMWSINRKIY 203
CQ + S+ + V + L C T ++ + N K
Sbjct: 71 CQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGR 130
Query: 204 DHVNWNSN 211
+ + NS+
Sbjct: 131 KYFHHNSD 138
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 26.3 bits (58), Expect = 5.7
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSIN 199
++V G TL+C+ + I W
Sbjct: 19 LIVSKGEPATLNCKAEGRPTPTIEWYKG 46
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 26.6 bits (58), Expect = 6.1
Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 9/99 (9%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVF 231
++V+ G+ L LD + ++W NK + +D +
Sbjct: 28 IVVVAGNKLRLDVPISGDPAPTVIWQ-------KAITQGNKAPARPAPDAPEDTGDSDEW 80
Query: 232 SGGVDLAAASSPGGE-NIYDQKSTLTVFDTELHTDDGNY 269
L + +S TV E D+G Y
Sbjct: 81 VFDKKLLCETEGRVRVETTKDRSIFTVEGAEK-EDEGVY 118
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 26.2 bits (58), Expect = 6.1
Identities = 4/25 (16%), Positives = 7/25 (28%), Gaps = 1/25 (4%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMW 196
+ + L C + S W
Sbjct: 20 LTFTTSERVVLTCEL-SRVDFPATW 43
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein
structure initiative, MCSG glucosidase, NAD-dependent;
HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5
d.162.1.2
Length = 472
Score = 27.4 bits (60), Expect = 6.4
Identities = 9/87 (10%), Positives = 29/87 (33%), Gaps = 9/87 (10%)
Query: 98 RAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDM 157
R + + L++ D + P + Y NP ++ + + P + +++
Sbjct: 143 YGMRSIGGV--LEILDYMEKYSPDAWMLNYS-------NPAAIVAEATRRLRPNSKILNI 193
Query: 158 SNCQIHTIYSEAFYVMVLPGSNLTLDC 184
+ + A + + + +
Sbjct: 194 CDMPVGIEDRMAQILGLSSRKEMKVRY 220
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 26.0 bits (57), Expect = 6.4
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMW 196
V V+ G L CRV + W
Sbjct: 16 VTVVEGGTAILTCRVDQNDNTSLQW 40
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 27.2 bits (59), Expect = 6.6
Identities = 8/66 (12%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
Query: 57 QVLDLSSNNI-NVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF----RGVTNMDELDL 111
+ L + NV+ + + ++ + + L R + ++ +++
Sbjct: 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314
Query: 112 SDNLLS 117
N LS
Sbjct: 315 KYNYLS 320
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 26.8 bits (59), Expect = 6.6
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSIN 199
+ N TL C V + T + +
Sbjct: 110 KISWTCINTTLTCEVMNGTDPELNLYQD 137
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 27.2 bits (60), Expect = 6.8
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRK 201
V + G L L C V P + W N K
Sbjct: 232 VTIQEGKALNLTCNVWGDPPPEVSWLKNEK 261
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 26.5 bits (58), Expect = 7.1
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRK 201
++ SN TL C V T + ++
Sbjct: 105 MIYWECSNATLTCEVLEGTDVELKLYQGKE 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 26.7 bits (59), Expect = 7.8
Identities = 11/85 (12%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 92 LEFVDDRAFRGVTNMDELDLSDNLLS-----TVPSLIYIPYLKSINLAHNPINQISSYSF 146
+ ++D + +++ Y+P L S++++ I ++F
Sbjct: 187 MGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTF 246
Query: 147 QSTPGIRYIDMSNCQIHTIYSEAFY 171
+ I + + + TI F
Sbjct: 247 AQKKYLLKIKLPH-NLKTIGQRVFS 270
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 26.6 bits (58), Expect = 7.9
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 11/61 (18%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVF 231
V ++TL C I W +NS + + E LS++NS L +
Sbjct: 120 TTVKELDSVTLTCLSND-IGANIQWL----------FNSQSLQLTERMTLSQNNSILRID 168
Query: 232 S 232
Sbjct: 169 P 169
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 26.4 bits (58), Expect = 7.9
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 16/68 (23%)
Query: 160 CQI-HTIYSEAFYVMVLP--------------GSNLTLDCRVQSATPC-RIMWSINRKIY 203
CQ + S+ + V + L C T ++ + N K
Sbjct: 71 CQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDR 130
Query: 204 DHVNWNSN 211
+ + NS+
Sbjct: 131 KYFHHNSD 138
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 26.8 bits (59), Expect = 8.2
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 168 EAFYVMVLPGSNLTLDCRVQSATPC-RIMWSINRKIYDHVNWNSN 211
+ + G L L C +++ N K + +WNSN
Sbjct: 88 QVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSN 132
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 26.8 bits (58), Expect = 9.1
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWS 197
V++ G ++ + C P +
Sbjct: 9 VILPRGGSVLVTCSTSCDQPMLLGIE 34
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 26.6 bits (58), Expect = 9.1
Identities = 3/28 (10%), Positives = 6/28 (21%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSIN 199
S T C+ + +
Sbjct: 195 WTWPENSQQTPMCQAWGNPLPELKCLKD 222
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
hypothetical protein; 2.05A {Sinorhizobium meliloti}
Length = 218
Score = 26.2 bits (58), Expect = 9.4
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 24 PLGCSCKWKAGK 35
+GC+ KW AG
Sbjct: 198 SIGCNIKWTAGN 209
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.406
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,953,487
Number of extensions: 220854
Number of successful extensions: 2424
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1020
Number of HSP's successfully gapped: 481
Length of query: 269
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 177
Effective length of database: 4,133,061
Effective search space: 731551797
Effective search space used: 731551797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)