RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14765
(269 letters)
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 80.5 bits (197), Expect = 3e-18
Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 7/155 (4%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
CP C C R V+C D +P+ + DT +LDL +N I ++ F + N
Sbjct: 3 VCPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNL--KN 56
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQI 141
+ L L K+ + AF + ++ L LS N L +P + + + + N I ++
Sbjct: 57 LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL-QELRVHENEITKV 115
Query: 142 SSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLP 176
F + +++ + + E +
Sbjct: 116 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150
Score = 31.9 bits (71), Expect = 0.069
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGI----TNIQKLYLRKCKLEF--VDDRAFRGVTNMDELD 110
QV+ L +NNI+ + F G + + L +++ + FR V +
Sbjct: 245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 304
Query: 111 L 111
L
Sbjct: 305 L 305
Score = 31.2 bits (69), Expect = 0.12
Identities = 21/147 (14%), Positives = 39/147 (26%), Gaps = 31/147 (21%)
Query: 42 DRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR--- 98
D N TIP+G+ L L N I + + L
Sbjct: 159 DTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 218
Query: 99 ------------------AFRGVTNMDELDLSDNLLSTVPSLIYIPY--------LKSIN 132
+ + L +N +S + S + P ++
Sbjct: 219 PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 278
Query: 133 LAHNPIN--QISSYSFQSTPGIRYIDM 157
L NP+ +I +F+ + +
Sbjct: 279 LFSNPVQYWEIQPSTFRCVYVRAAVQL 305
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 61.0 bits (146), Expect = 2e-11
Identities = 32/188 (17%), Positives = 68/188 (36%), Gaps = 3/188 (1%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C + K T C + +P GI +Q + L N I+ + F I
Sbjct: 2 CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTI 60
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI-YIPYLKSINLAHNPINQI 141
L+ + +L + L S P+ + L +++L + ++
Sbjct: 61 LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120
Query: 142 SSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRK 201
F+ ++Y+ + + + + + F + ++L L S+ P R ++
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGNRISSVPERAFRGLHSL 179
Query: 202 IYDHVNWN 209
++ N
Sbjct: 180 DRLLLHQN 187
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 55.1 bits (131), Expect = 1e-09
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C A V C RN +P + DT +L LS N + + T + +L
Sbjct: 4 CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPY--TRLTQLN 61
Query: 87 LRKCK 91
L + +
Sbjct: 62 LDRAE 66
Score = 38.5 bits (88), Expect = 4e-04
Identities = 7/64 (10%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 103 VTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQI 162
V + E++ L+ +P + ++L+ N + S + + +++ ++
Sbjct: 9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67
Query: 163 HTIY 166
+
Sbjct: 68 TKLQ 71
Score = 32.0 bits (71), Expect = 0.051
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 75 LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINL 133
L ++KL L L + G+ N+D L L +N L T+P + L L
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202
Query: 134 AHNPIN 139
NP
Sbjct: 203 HGNPWL 208
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 54.0 bits (128), Expect = 2e-09
Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 5/146 (3%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C+ TV+C R IP I L T L L+ N + + + +
Sbjct: 2 CPAMCHCEG----TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLV 57
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP-SLIYIPYLKSINLAHNPINQI 141
+ R + + + + + + LK++NL N I+ +
Sbjct: 58 KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117
Query: 142 SSYSFQSTPGIRYIDMSNCQIHTIYS 167
SF+ + +++++ +
Sbjct: 118 MPGSFEHLNSLTSLNLASNPFNCNCH 143
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 46.5 bits (109), Expect = 1e-06
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L NNI+ + + +T +Q+L+ K+ V + +TN++ L N +
Sbjct: 310 TYLTLYFNNISDI---SPVS-SLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQI 363
Query: 117 STVPSLIYIPYLKSINLAHN 136
S + L + + + L
Sbjct: 364 SDLTPLANLTRITQLGLNDQ 383
Score = 41.9 bits (97), Expect = 5e-05
Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 76 QMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAH 135
+ N+ L L + D +T + L ++N +S V SL + + ++ H
Sbjct: 303 ISNLKNLTYLTLYFNNIS--DISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGH 360
Query: 136 NPINQISSYSFQSTPGIRYIDMSN 159
N I+ ++ + I + +++
Sbjct: 361 NQISDLT--PLANLTRITQLGLND 382
Score = 40.4 bits (93), Expect = 1e-04
Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L +N I+ + L + + D + N+ L L N +
Sbjct: 266 TELKLGANQISNISPLAGLTALTNLEL------NENQLEDISPISNLKNLTYLTLYFNNI 319
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
S + + + L+ + A+N ++ +SS + I ++ + QI +
Sbjct: 320 SDISPVSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDL 366
Score = 38.1 bits (87), Expect = 7e-04
Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L ++N I+ +I +TN+ +L L +L+ + +TN+ +LDL++N +
Sbjct: 200 ESLIATNNQIS----DITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI 253
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLP 176
S + L + L + L N I+ IS + + ++ + + + S + L
Sbjct: 254 SNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT 313
Query: 177 GSN 179
Sbjct: 314 LYF 316
Score = 35.4 bits (80), Expect = 0.006
Identities = 19/153 (12%), Positives = 50/153 (32%), Gaps = 6/153 (3%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
L N+ + Q + + L + ++ +D + N+ +++ S+N L+
Sbjct: 27 TVLGKTNVT----DTVSQTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTD 80
Query: 119 VPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGS 178
+ L + L I + +N I I+ + + + + + L S
Sbjct: 81 ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 140
Query: 179 NLTLDCRVQSATPCRIMWSINRKIYDHVNWNSN 211
+ T+ + + + +N
Sbjct: 141 SNTISDISALSGLTSLQQLSFGNQVTDLKPLAN 173
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 44.1 bits (102), Expect = 6e-06
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 4/64 (6%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C C R C + IP + + L + V+QK F G ++
Sbjct: 6 CHCSN----RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEIS 61
Query: 87 LRKC 90
Sbjct: 62 QNDV 65
Score = 29.9 bits (65), Expect = 0.29
Identities = 5/45 (11%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSL 122
G + L + + ++ + + + L +P+L
Sbjct: 199 GASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTL 241
Score = 29.5 bits (64), Expect = 0.32
Identities = 5/36 (13%), Positives = 15/36 (41%)
Query: 126 PYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQ 161
++++ I+ + SY ++ +R N +
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 29.5 bits (64), Expect = 0.35
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 90 CKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHN 136
LE + + F G + LD+S + ++PS L + L++ + +
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235
Score = 25.6 bits (54), Expect = 6.2
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK 91
+LD+S I+ L + ++ K
Sbjct: 204 VILDISRTRIHSLPSYGL--ENLKKLRARSTYNLK 236
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 40.1 bits (93), Expect = 4e-05
Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VL L+ ++ VL Q+ + L L +L + A + ++ L SDN L
Sbjct: 1 RVLHLAHKDLTVL--CHLEQL--LLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNAL 55
Query: 117 STVPSLIYIPYLKSINLAHNPINQISS-YSFQSTPGIRYIDMSNCQIHTI 165
V + +P L+ + L +N + Q ++ S P + +++ +
Sbjct: 56 ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
Score = 37.0 bits (85), Expect = 4e-04
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 8/91 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LDLS N + L + + +Q ++ + + EL L +N L
Sbjct: 23 THLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-----GVANLPRLQELLLCNNRL 77
Query: 117 STVPSLIYI---PYLKSINLAHNPINQISSY 144
++ + P L +NL N + Q
Sbjct: 78 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108
Score = 33.5 bits (76), Expect = 0.009
Identities = 9/65 (13%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 109 LDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
L L+ L+ + L + + ++L+HN + + + + + + S+ + +
Sbjct: 3 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGV 61
Query: 169 AFYVM 173
A
Sbjct: 62 ANLPR 66
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 42.1 bits (97), Expect = 4e-05
Identities = 10/80 (12%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Query: 86 YLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYS 145
+++EL++S+N L +P+L P L+ + + N + ++
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVPE-- 321
Query: 146 FQSTPGIRYIDMSNCQIHTI 165
++ + + +
Sbjct: 322 --LPQNLKQLHVEYNPLREF 339
Score = 39.8 bits (91), Expect = 2e-04
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 10/67 (14%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L++S+N + L +++L L V + N+ +L + N L
Sbjct: 287 EELNVSNNKLIELPALP------PRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPL 336
Query: 117 STVPSLI 123
P +
Sbjct: 337 REFPDIP 343
Score = 38.3 bits (87), Expect = 6e-04
Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 6/106 (5%)
Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIH 163
EL+L++ LS++P L P+L+S+ + N + ++ ++ + + N +
Sbjct: 38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPELPQS----LKSLLVDNNNLK 91
Query: 164 TIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWN 209
+ + L SN L+ + + +
Sbjct: 92 ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD 137
Score = 33.3 bits (74), Expect = 0.025
Identities = 22/186 (11%), Positives = 55/186 (29%), Gaps = 45/186 (24%)
Query: 24 PLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQ 83
P + A R +C+DR L+L++ ++ L +
Sbjct: 19 PGNGEQREMAVSRLRDCLDRQ-----------AHELELNNLGLSSLPELP---------- 57
Query: 84 KLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISS 143
+++ L S N L+ +P L LKS+ + +N + +
Sbjct: 58 --------------------PHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKAL-- 93
Query: 144 YSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIY 203
+ + + + ++ ++ N +L + + N ++
Sbjct: 94 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153
Query: 204 DHVNWN 209
+
Sbjct: 154 ELPELQ 159
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 39.2 bits (90), Expect = 2e-04
Identities = 19/121 (15%), Positives = 49/121 (40%), Gaps = 1/121 (0%)
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIN 139
++L LR K+ +++ + D +D SDN + + + LK++ + +N I
Sbjct: 18 VRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRIC 76
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSIN 199
+I Q+ P + + ++N + + + + L + + ++ I
Sbjct: 77 RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIY 136
Query: 200 R 200
+
Sbjct: 137 K 137
Score = 35.7 bits (81), Expect = 0.002
Identities = 8/65 (12%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 100 FRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMS 158
+ ELDL + + +L + +I+ + N I ++ + ++ +
Sbjct: 14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN 73
Query: 159 NCQIH 163
Sbjct: 74 RICRI 78
Score = 33.4 bits (75), Expect = 0.015
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 111 LSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
L+ L+ + ++L I I + + ID S+ +I +
Sbjct: 3 LTAELIEQAAQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL 56
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 38.6 bits (88), Expect = 2e-04
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 5/119 (4%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQK-EIFLQMGITN 81
CP C G + C + + +L N LQ E+ G+
Sbjct: 1 CPDACCP---HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGE 57
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIP-YLKSINLAHNPIN 139
++ L + K L FV AF + L+LS N L ++ L+ + L+ NP++
Sbjct: 58 LRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 39.2 bits (89), Expect = 4e-04
Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 5/159 (3%)
Query: 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR----AFRGVTNMDEL 109
LD Q LD+ ++ + L + Q + L C L + A R + EL
Sbjct: 2 LDIQSLDIQCEELSDARWAELLP-LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 110 DLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
+L N L V + L++ + ++ + + G+ + +
Sbjct: 61 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120
Query: 170 FYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNW 208
++ G L + + + +
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 159
Score = 26.9 bits (57), Expect = 2.9
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQM--GITNIQKLYLRKCKLEFVDDRAFRGV-----TNMDEL 109
+VL L+ +++ ++++L L L +++L
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431
Query: 110 DLSDNLLS 117
L D S
Sbjct: 432 VLYDIYWS 439
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 35.5 bits (80), Expect = 0.005
Identities = 17/156 (10%), Positives = 54/156 (34%), Gaps = 7/156 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q LDL+ N L ++ ++ + + ++ F + +DLS++++
Sbjct: 3 QTLDLTGKN---LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSP-FRVQHMDLSNSVI 58
Query: 117 S--TVPSLI-YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
T+ ++ L++++L ++ + + +++S C + ++ +
Sbjct: 59 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118
Query: 174 VLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWN 209
+ T + ++ N
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 154
Score = 25.8 bits (55), Expect = 5.2
Identities = 22/166 (13%), Positives = 47/166 (28%), Gaps = 6/166 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q +DLS++ I V L + +Q L L +L +N+ L+LS
Sbjct: 49 QHMDLSNSVIEVSTLHGILS-QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC-- 105
Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLP 176
++ S+ F T + +++
Sbjct: 106 ---SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL 162
Query: 177 GSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLS 222
+ + + S + + + ++N + LS
Sbjct: 163 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 208
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 34.6 bits (78), Expect = 0.007
Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 100 FRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSN 159
++ + L DN +S + L +P L ++L +N I+ +S +T + + ++N
Sbjct: 169 LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN 226
Score = 33.9 bits (76), Expect = 0.013
Identities = 13/103 (12%), Positives = 33/103 (32%), Gaps = 2/103 (1%)
Query: 71 KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKS 130
IF + N K+ K + D + + L ++T+ + Y+ L
Sbjct: 10 NVIFPDPALANAIKIAAGKSNVT--DTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIG 67
Query: 131 INLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
+ L N I ++ + + + + + + +
Sbjct: 68 LELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIK 110
Score = 31.5 bits (70), Expect = 0.065
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 99 AFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAH 135
+ N+ E+ L +N +S V L L + L +
Sbjct: 190 PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226
>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR
{Human (Homo sapiens), FGFR2a [TaxId: 9606]}
Length = 97
Score = 31.7 bits (71), Expect = 0.020
Identities = 6/52 (11%), Positives = 14/52 (26%)
Query: 174 VLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDN 225
V + + C + W N K + + + L ++
Sbjct: 17 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMES 68
>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1,
ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 31.5 bits (70), Expect = 0.023
Identities = 5/48 (10%), Positives = 10/48 (20%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEET 219
S T C+ + + + + E T
Sbjct: 14 WTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGT 61
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 33.2 bits (74), Expect = 0.024
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 76 QMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS-TVPSLIYIPYLKSINLA 134
N+ L LR ++ + + + L++S N L +P + A
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299
Query: 135 HNP 137
+N
Sbjct: 300 NNK 302
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 32.1 bits (72), Expect = 0.036
Identities = 15/65 (23%), Positives = 26/65 (40%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L+LS+N + L + N++ L L +L+ + ++EL L N L
Sbjct: 68 LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127
Query: 117 STVPS 121
S
Sbjct: 128 SDTFR 132
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 32.3 bits (72), Expect = 0.037
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 99 AFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINL 133
G+T + L LS N +S + +L + L + L
Sbjct: 173 PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207
Score = 31.9 bits (71), Expect = 0.049
Identities = 16/103 (15%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
Query: 71 KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKS 130
K+IF K L+K + D + ++D++ +++ + +V + Y+P +
Sbjct: 15 KQIFSDDAFAETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTK 72
Query: 131 INLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
+ L N + I + G ++D + + + + +
Sbjct: 73 LFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLK 115
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 89
Score = 30.5 bits (68), Expect = 0.047
Identities = 11/53 (20%), Positives = 22/53 (41%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKD 224
++V G ++T+ C+V ++WS N K + + V + D
Sbjct: 13 IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGD 65
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 91
Score = 29.8 bits (66), Expect = 0.091
Identities = 9/56 (16%), Positives = 17/56 (30%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSY 227
L G +TL+C +I W +S + + + +Y
Sbjct: 15 TYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTY 70
>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId:
9606]}
Length = 101
Score = 29.8 bits (66), Expect = 0.12
Identities = 8/37 (21%), Positives = 11/37 (29%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNW 208
V G ++ L +V P W RK
Sbjct: 10 QKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEH 46
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 29.7 bits (65), Expect = 0.27
Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 15/127 (11%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
TI + I + + + + +++ L I I+K+ D +
Sbjct: 6 TIKDAIRIFEERKSVVATEA----EKVELHGMIPPIEKM-----------DATLSTLKAC 50
Query: 107 DELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY 166
L LS N + + SL + L+ ++L N I +I + + N
Sbjct: 51 KHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG 110
Query: 167 SEAFYVM 173
E +
Sbjct: 111 IEKLVNL 117
>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1,
extracellular domain {Mouse (Mus musculus) [TaxId:
10090]}
Length = 114
Score = 28.5 bits (63), Expect = 0.30
Identities = 8/104 (7%), Positives = 31/104 (29%), Gaps = 17/104 (16%)
Query: 171 YVMVLPGSNLTLDCRVQSATPCRIMWSINRK------IYDHVNWNSNKINIKEETVLSKD 224
++ V G+N T C + + + ++ + ++ + +
Sbjct: 8 WLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQL 67
Query: 225 NS----YLSVFSGGVDLAA-------ASSPGGENIYDQKSTLTV 257
+ ++++ + + + P + + L V
Sbjct: 68 PNRHDFHMNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVV 111
>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 100
Score = 27.5 bits (60), Expect = 0.68
Identities = 6/48 (12%), Positives = 18/48 (37%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEET 219
G ++TL C + W+ + + ++ + K +++
Sbjct: 15 ATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS 62
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 28.5 bits (62), Expect = 0.74
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 93 EFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSI 131
+ D + +T ++ LD+S N +S + L + L+S+
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 199
>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 27.3 bits (59), Expect = 0.79
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 174 VLPGSNLTLDCRVQSATPCRIMW 196
G+ L C Q +P
Sbjct: 14 ATIGNRAVLTCSEQDGSPPSEYT 36
>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo
sapiens), alpha-chain [TaxId: 9606]}
Length = 115
Score = 27.5 bits (60), Expect = 0.82
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 5/61 (8%)
Query: 171 YVMVLPGSNLTLDCRVQSATPCRIMW-----SINRKIYDHVNWNSNKINIKEETVLSKDN 225
+V V G+ + L C S+ P + W + ++ + +
Sbjct: 9 HVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKK 68
Query: 226 S 226
S
Sbjct: 69 S 69
>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 89
Score = 26.8 bits (58), Expect = 1.2
Identities = 8/55 (14%), Positives = 15/55 (27%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNS 226
GS+L C + W + + N + L ++S
Sbjct: 11 TEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDS 65
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 27.5 bits (59), Expect = 2.0
Identities = 9/117 (7%), Positives = 29/117 (24%), Gaps = 6/117 (5%)
Query: 104 TNMDELDLSDNLLSTV------PSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDM 157
++ E+ LS N + T ++ L+ + ++ ++ + +
Sbjct: 31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 90
Query: 158 SNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKIN 214
++HT+ L + + +
Sbjct: 91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 147
Score = 26.4 bits (56), Expect = 4.2
Identities = 13/106 (12%), Positives = 33/106 (31%), Gaps = 5/106 (4%)
Query: 109 LDLSDNLLSTVPS-LIYIPYLKSINLAHNPIN----QISSYSFQSTPGIRYIDMSNCQIH 163
++ +V + L+ +K I L+ N I + S + S + + S+
Sbjct: 13 DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG 72
Query: 164 TIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWN 209
+ E + L L ++ + + + +
Sbjct: 73 RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 118
>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus),
beta-chain [TaxId: 10090]}
Length = 112
Score = 26.2 bits (57), Expect = 2.3
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 171 YVMVLPGSNLTLDCRVQSATPCRIMW 196
+ +V G + L C ++++ + W
Sbjct: 10 WRLVPRGQAVNLRCILKNSQYPWMSW 35
>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 94
Score = 25.8 bits (55), Expect = 2.5
Identities = 4/48 (8%), Positives = 14/48 (29%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEET 219
V+ + L+C ++ + ++ + E +
Sbjct: 12 VLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS 59
>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus),
alpha-chain [TaxId: 10090]}
Length = 110
Score = 25.9 bits (56), Expect = 2.5
Identities = 13/100 (13%), Positives = 28/100 (28%), Gaps = 13/100 (13%)
Query: 171 YVMVLPGSNLTLDCRVQSAT-------------PCRIMWSINRKIYDHVNWNSNKINIKE 217
V + LT+ C ++ + ++ +R + KE
Sbjct: 9 QVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKE 68
Query: 218 ETVLSKDNSYLSVFSGGVDLAAASSPGGENIYDQKSTLTV 257
T + + V A S + + + LT+
Sbjct: 69 ATSFHLQKASVQESDSAVYYCALSGGNNKLTFGAGTKLTI 108
>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide
isomerase/thioredoxin TTHA0593 {Thermus thermophilus
[TaxId: 274]}
Length = 187
Score = 26.4 bits (57), Expect = 2.7
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 24 PLGCSCKWKAGK 35
+GC+ KW+ G
Sbjct: 169 AIGCTIKWRPGN 180
>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}
Length = 109
Score = 25.7 bits (55), Expect = 2.8
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRK 201
+ G ++ C+V S I W + +
Sbjct: 15 ASTVVGGDVEFVCKVYSDAQPHIQWIKHVE 44
>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 118
Score = 26.1 bits (56), Expect = 3.0
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 171 YVMVLPGSNLTLDCRVQSATPCRIMW 196
V+V G+++ ++CR + W
Sbjct: 10 MVIVKSGTSVKIECRSLDTNIHTMFW 35
>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo
sapiens), alpha-chain [TaxId: 9606]}
Length = 113
Score = 25.7 bits (55), Expect = 3.4
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 171 YVMVLPGSNLTLDCRVQSATPCRIMW 196
+ V G NL L+C + + W
Sbjct: 9 ALSVPEGENLVLNCSFTDSAIYNLQW 34
>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain
[TaxId: 10090]}
Length = 115
Score = 25.6 bits (55), Expect = 3.6
Identities = 11/108 (10%), Positives = 36/108 (33%), Gaps = 21/108 (19%)
Query: 171 YVMVLPGSNLTLDCRVQSATPCRIMWSINRK-------------IYDHVNWNSNKINIKE 217
++V + C V+S + ++ + + + K+
Sbjct: 7 SLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKK 66
Query: 218 ETVLSKDNS----YLSVFSGGVDLAA----ASSPGGENIYDQKSTLTV 257
++ + + +LS+ + + + A+ + ++ + LTV
Sbjct: 67 RNIILESSDSRRPFLSIMNVKPEDSDFYFCATVGSPKMVFGTGTKLTV 114
>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus),
alpha-chain [TaxId: 10090]}
Length = 115
Score = 25.5 bits (55), Expect = 3.8
Identities = 8/61 (13%), Positives = 16/61 (26%), Gaps = 5/61 (8%)
Query: 171 YVMVLPGSNLTLDCRVQSATPCRIMW-----SINRKIYDHVNWNSNKINIKEETVLSKDN 225
V V G++L L C+ + + W ++ +
Sbjct: 9 RVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSK 68
Query: 226 S 226
S
Sbjct: 69 S 69
>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 126
Score = 25.4 bits (54), Expect = 4.4
Identities = 6/38 (15%), Positives = 10/38 (26%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWN 209
+ L G L CR+ M + +
Sbjct: 12 IRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVH 49
>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable
domain, VL-kappa {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 106
Score = 25.0 bits (54), Expect = 4.6
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMW 196
+ V PG LT+ C+ + R+ W
Sbjct: 10 LTVSPGEKLTISCKASESVTSRMHW 34
>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 113
Score = 24.8 bits (53), Expect = 6.3
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 17/106 (16%)
Query: 171 YVMVLPGSNLTLDCRVQSAT---------PCRIMWSINRKIYDHVNWNSNKINIKEETVL 221
Y++ G +TL C S P + + + + N
Sbjct: 8 YLIKTRGQQVTLSCSPISGHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQF 67
Query: 222 SKDNSYLSVFSG-----GVDLAAASSPGGENIYD---QKSTLTVFD 259
S S ++V + + L A+S N Q + LTV +
Sbjct: 68 SNSRSEMNVSTLELGDSALYLCASSLADRVNTEAFFGQGTRLTVVE 113
>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus
musculus), alpha-chain [TaxId: 10090]}
Length = 110
Score = 24.8 bits (53), Expect = 6.9
Identities = 6/44 (13%), Positives = 11/44 (25%)
Query: 171 YVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKIN 214
+ V G L+C +++ W S
Sbjct: 8 SLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSV 51
>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo
sapiens), gamma-chain [TaxId: 9606]}
Length = 120
Score = 24.9 bits (53), Expect = 7.6
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNW 208
V V G TL C ++ + RK +
Sbjct: 11 VPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMT 47
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 25.2 bits (54), Expect = 8.7
Identities = 14/58 (24%), Positives = 21/58 (36%)
Query: 183 DCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSGGVDLAAA 240
++Q I +N + D V S+ +I L+ L S G AAA
Sbjct: 218 PHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAA 275
>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo
sapiens), alpha-chain [TaxId: 9606]}
Length = 110
Score = 24.4 bits (52), Expect = 9.2
Identities = 3/25 (12%), Positives = 8/25 (32%)
Query: 172 VMVLPGSNLTLDCRVQSATPCRIMW 196
+ G L C + + ++
Sbjct: 8 MDCAEGRAANLPCNHSTISGNEYVY 32
>d1t98a2 a.47.6.1 (A:119-281) Chromosome partition protein MukF
(KicB), C-terminal domain {Escherichia coli [TaxId:
562]}
Length = 163
Score = 24.8 bits (54), Expect = 9.3
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 50 EGIDLDTQVLDLSSNNINVLQKEIF-----LQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104
I +L +S + LQ + LQ + IQ + L FVD F +
Sbjct: 81 AAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQS 140
Query: 105 NMD 107
+D
Sbjct: 141 KLD 143
>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo
sapiens), alpha-chain [TaxId: 9606]}
Length = 111
Score = 24.4 bits (52), Expect = 9.5
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 171 YVMVLPGSNLTLDCRVQSATPCRIMW 196
+ V G L+C ++ +W
Sbjct: 9 SLSVQEGRISILNCDYTNSMFDYFLW 34
>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 183
Score = 25.1 bits (54), Expect = 9.6
Identities = 15/170 (8%), Positives = 47/170 (27%), Gaps = 21/170 (12%)
Query: 80 TNIQKLYLRKCKLEFVDDR-AFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHN-- 136
T++ + + ++ + D+R F N + + V + + H
Sbjct: 7 TSLDGAIIIEPEV-YTDERGYFMETFNEAIFQENGLEVRFVQDNESMSVRGVLRGLHFQR 65
Query: 137 ----------PINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRV 186
+I + + + + + ++ L
Sbjct: 66 EKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSD 125
Query: 187 QSATPCRIMWSINRKIYDHVNWNSNKINIK------EETVLS-KDNSYLS 229
+ + + + + W+ I I ++ ++S KD ++
Sbjct: 126 ECIVNYKCTELYHPEYDSGIPWDDPDIGIDWPLEMVDDLIISEKDRNWKP 175
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.406
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 980,558
Number of extensions: 43668
Number of successful extensions: 294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 101
Length of query: 269
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,254,276
Effective search space: 232041060
Effective search space used: 232041060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.4 bits)