BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14766
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 90/159 (56%), Gaps = 7/159 (4%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
+CP CSC + K V C+ +N +P+GI +T++L+L N I +++ F + +
Sbjct: 34 TCPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHL--RH 89
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPIH 139
++ L L + + ++ AF G+ N++ L+L DN L+T+P + +Y+ LK + L +NPI
Sbjct: 90 LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSE-AFYGSDQIR 177
I SY+F P +R +D+ + + SE AF G +R
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 6/142 (4%)
Query: 33 AGKRTVECIDRNFYTIPEGIDL---DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK 89
A T+E D TIP G + + L L +N I + F + I ++++L L +
Sbjct: 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR--IPSLRRLDLGE 169
Query: 90 CK-LEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQS 148
K L ++ + AF G++N+ L+L+ L +P+L + L ++L+ N + I SFQ
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQG 229
Query: 149 TPGIRYIDMSNCQIHTIYSEAF 170
++ + M QI I AF
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAF 251
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 88/162 (54%), Gaps = 7/162 (4%)
Query: 19 TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMG 78
T SCP CSC +A + V C R +P I ++T+ L+L N+I V++ + F +
Sbjct: 2 TGTSCPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHL- 58
Query: 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHN 136
+++ L L K + ++ AF G+ +++ L+L DN L+TVP + Y+ L+ + L +N
Sbjct: 59 -RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 137 PIHQISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYGSDQIR 177
PI I SY+F P +R +D+ + + I AF G +R
Sbjct: 118 PIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 54/85 (63%), Gaps = 4/85 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L+LS N +++++ F G+T+++KL+L ++ ++ AF + +++EL+LS N L
Sbjct: 181 EELELSGNRLDLIRPGSF--QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Query: 117 STVPSLIYIPY--LKSINLAHNPIH 139
++P ++ P L+ ++L HNP H
Sbjct: 239 MSLPHDLFTPLHRLERVHLNHNPWH 263
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 68/136 (50%), Gaps = 2/136 (1%)
Query: 37 TVECIDRNFYTIP-EGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEF 94
T+E D T+P + + +++ +L N + + + ++++L L + K LE+
Sbjct: 87 TLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEY 146
Query: 95 VDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRY 154
+ + AF G+ N+ L+L L +P+L + L+ + L+ N + I SFQ +R
Sbjct: 147 ISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 155 IDMSNCQIHTIYSEAF 170
+ + + Q+ TI AF
Sbjct: 207 LWLMHAQVATIERNAF 222
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 88/162 (54%), Gaps = 7/162 (4%)
Query: 19 TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMG 78
T SCP CSC +A + V C R +P I ++T+ L+L N+I V++ + F +
Sbjct: 2 TGTSCPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHL- 58
Query: 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHN 136
+++ L L K + ++ AF G+ +++ L+L DN L+TVP + Y+ L+ + L +N
Sbjct: 59 -RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 137 PIHQISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYGSDQIR 177
PI I SY+F P +R +D+ + + I AF G +R
Sbjct: 118 PIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 53/83 (63%), Gaps = 4/83 (4%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
L+LS N +++++ F G+T+++KL+L ++ ++ AF + +++EL+LS N L +
Sbjct: 183 LELSGNRLDLIRPGSF--QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS 240
Query: 119 VPSLIYIPY--LKSINLAHNPIH 139
+P ++ P L+ ++L HNP H
Sbjct: 241 LPHDLFTPLHRLERVHLNHNPWH 263
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 68/136 (50%), Gaps = 2/136 (1%)
Query: 37 TVECIDRNFYTIP-EGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEF 94
T+E D T+P + + +++ +L N + + + ++++L L + K LE+
Sbjct: 87 TLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEY 146
Query: 95 VDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRY 154
+ + AF G+ N+ L+L L +P+L + L+ + L+ N + I SFQ +R
Sbjct: 147 ISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 155 IDMSNCQIHTIYSEAF 170
+ + + Q+ TI AF
Sbjct: 207 LWLMHAQVATIERNAF 222
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 83/154 (53%), Gaps = 7/154 (4%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
+CP CSC + K V C R +P+GI +T+ L+L NNI ++Q + F + +
Sbjct: 45 NCPSVCSCSNQFSK--VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHL--HH 100
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIH 139
++ L L + + ++ AF G+ +++ L+L DN L+ +PS Y+ L+ + L +NPI
Sbjct: 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160
Query: 140 QISSYSFQSTPGIRYIDMSNC-QIHTIYSEAFYG 172
I SY+F P + +D+ ++ I AF G
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 2/142 (1%)
Query: 33 AGKRTVECIDRNFYTIPEG-IDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK 91
A T+E D IP G + +++ +L N + + + ++ +L L + K
Sbjct: 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK 182
Query: 92 -LEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTP 150
LE++ + AF G+ N+ L+L + +P+L + L+ + ++ N +I SF
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242
Query: 151 GIRYIDMSNCQIHTIYSEAFYG 172
++ + + N Q+ I AF G
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDG 264
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 6/163 (3%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
CP C C A R V C + F +PEGI +T++LDL N I L ++ F
Sbjct: 1 TGCPPRCECS--AQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEF--ASFP 56
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPI 138
++++L L + + V+ AF + N+ L L N L +P ++ + L ++++ N I
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTI 181
+ Y FQ ++ +++ + + I AF G + + + T+
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+S N I +L +F + N++ L + L ++ RAF G+ ++++L L L++
Sbjct: 109 LDISENKIVILLDYMF--QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166
Query: 119 VP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYG 172
+P +L ++ L + L H I+ I YSF+ ++ +++S+ + T+ YG
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 105 NMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
N+ L ++ L+ VP L ++ YL+ +NL++NPI I ++ I + Q+
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284
Query: 163 HTIYSEAFYGSDQIRRPTITG 183
+ AF G + +R ++G
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSG 305
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPI 138
N+ L + C L V A R + + L+LS N +ST+ L + L+ I L +
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284
Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
+ Y+F+ +R +++S Q+ T+ F+
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 6/147 (4%)
Query: 26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKL 85
GC+C GK+ V+C ++ ++P GI DT+ LDL S + L F G+T + L
Sbjct: 9 GCTCN--EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATF--RGLTKLTWL 64
Query: 86 YLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISS 143
L +L+ + F +T + L L++N L+++P ++ + L + L N + + S
Sbjct: 65 NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124
Query: 144 YSFQSTPGIRYIDMSNCQIHTIYSEAF 170
F ++ + ++ Q+ +I + AF
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAF 151
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 37 TVECIDRNFYTIPEGI-DLDTQV--LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE 93
T+ + ++P G+ D TQ+ L L N + L +F ++ T +++L L +L+
Sbjct: 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL--TKLKELRLNTNQLQ 144
Query: 94 FVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHN 136
+ AF +TN+ L LS N L +VP + + L++I L N
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 6/147 (4%)
Query: 26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKL 85
GC+C GK+ V+C ++ ++P GI DT+ LDL S + L F G+T + L
Sbjct: 9 GCTCN--EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATF--RGLTKLTWL 64
Query: 86 YLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISS 143
L +L+ + F +T + L L++N L+++P ++ + L + L N + + S
Sbjct: 65 NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124
Query: 144 YSFQSTPGIRYIDMSNCQIHTIYSEAF 170
F ++ + ++ Q+ +I + AF
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAF 151
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 37 TVECIDRNFYTIPEGI-DLDTQV--LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE 93
T+ + ++P G+ D TQ+ L L N + L +F ++ T +++L L +L+
Sbjct: 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL--TKLKELRLNTNQLQ 144
Query: 94 FVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHN 136
+ AF +TN+ L LS N L +VP + + L++I L N
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 8/150 (5%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP CSC TVEC + ++P GI T LDL +N++ L +F ++ T++
Sbjct: 1 CPSRCSCS----GTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDEL--TSL 54
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQ 140
+LYL KL+ + + F +T++ L+LS N L ++P+ ++ + LK + L N +
Sbjct: 55 TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS 114
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ F ++ + + Q+ ++ F
Sbjct: 115 LPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
A CP CSC + V C + ++P GI D Q L L++N I L+ +F +
Sbjct: 4 AGCPSQCSCD----QTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHL--V 57
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
N+Q+LY KL + F +T + +LDL+DN L ++P + + L I L +NP
Sbjct: 58 NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 15 LASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIF 74
L A CP GC C R V+C D +P+ I DT +LDL +N+I+ L+K+ F
Sbjct: 19 LPPTYSAMCPFGCHCHL----RVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDF 74
Query: 75 LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
G+ ++ L L K+ + ++AF + + +L +S N L +P
Sbjct: 75 --KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP 118
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 7/144 (4%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
SCP C C + C + +P+ + T +LDLS NN++ L+ E + +T
Sbjct: 10 VSCPANCLC----ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAE-WTPTRLT 64
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPI 138
N+ L L L F+ AF V N+ LDLS N L T+ ++ + L+ + L +N I
Sbjct: 65 NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI 124
Query: 139 HQISSYSFQSTPGIRYIDMSNCQI 162
+ +F+ ++ + +S QI
Sbjct: 125 VVVDRNAFEDMAQLQKLYLSQNQI 148
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 9/152 (5%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
A+CP CSC TV+C + ++P GI + Q+L L N I L+ +F +
Sbjct: 11 AACPSQCSCS----GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVF--DSLI 64
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPI 138
N+++LYL +L + F +T + LDL N L+ +PS ++ + +LK + + N +
Sbjct: 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
++ + + ++ + Q+ +I AF
Sbjct: 125 TELPR-GIERLTHLTHLALDQNQLKSIPHGAF 155
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 6/146 (4%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
CSC K +V+C + IP I DT+ LDL SN ++ L + F ++ T ++ LY
Sbjct: 12 CSCN--NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRL--TKLRLLY 67
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSY 144
L KL+ + F+ + N++ L ++DN L +P ++ + L + L N + +
Sbjct: 68 LNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR 127
Query: 145 SFQSTPGIRYIDMSNCQIHTIYSEAF 170
F S + Y+ + ++ ++ F
Sbjct: 128 VFDSLTKLTYLSLGYNELQSLPKGVF 153
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C+ TV+C R IP I L T L L+ N + + + + ++
Sbjct: 2 CPAMCHCE----GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGR-LPHL 56
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIHQ 140
KL L++ +L ++ AF G +++ EL L +N + + + +++ LK++NL N I
Sbjct: 57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC 116
Query: 141 ISSYSFQSTPGIRYIDMS----NCQIHTIYSEAFYGSDQIRRPTITG 183
+ SF+ + ++++ NC H + ++ +R+ ++ G
Sbjct: 117 VMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-----AEWLRKKSLNG 158
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 31/169 (18%)
Query: 26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKL 85
G C T +C++ NFY IP+ + T+ LDLS N + L F +Q L
Sbjct: 1 GSPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFF--SFPELQVL 58
Query: 86 YLRKCKLEFVDDRAFRGVTNMDELDLSDNL-----------LSTVPSLI----------- 123
L +C+++ ++D A++ ++++ L L+ N LS++ L+
Sbjct: 59 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 118
Query: 124 ----YIPYLKSINLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
++ LK +N+AHN I ++ Y F + + ++D+S+ +I +IY
Sbjct: 119 FPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 166
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183
K+++L+ NP+ + SYSF S P ++ +D+S C+I TI A+ + +TG
Sbjct: 32 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 86
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 7/151 (4%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
+CP C C+ TV+C ++ IPE I T L L++N VL+ + +
Sbjct: 4 ACPEKCRCE----GTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKK-LPQ 58
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIH 139
++K+ K+ +++ AF G + ++E+ L+ N L V ++ + LK++ L N I
Sbjct: 59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ + SF +R + + + QI T+ AF
Sbjct: 119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 31/158 (19%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C++ NFY IP+ + T+ LDLS N + L F +Q L L +C+++ ++
Sbjct: 13 TYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 70
Query: 97 DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
D A++ ++++ L L+ N LS++ L+ ++ LK
Sbjct: 71 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 130
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
+N+AHN I ++ Y F + + ++D+S+ +I +IY
Sbjct: 131 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 167
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183
K+++L+ NP+ + SYSF S P ++ +D+S C+I TI A+ + +TG
Sbjct: 33 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 87
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 31/158 (19%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C++ NFY IP+ + T+ LDLS N + L F +Q L L +C+++ ++
Sbjct: 13 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIE 70
Query: 97 DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
D A++ ++++ L L+ N LS++ L+ ++ LK
Sbjct: 71 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKE 130
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
+N+AHN I ++ Y F + + ++D+S+ +I +IY
Sbjct: 131 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 167
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183
K+++L+ NP+ + SYSF S P ++ +D+S C+I TI A+ + +TG
Sbjct: 33 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 87
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 31/158 (19%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C++ NFY IP+ + T+ LDLS N + L F +Q L L +C+++ ++
Sbjct: 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 68
Query: 97 DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
D A++ ++++ L L+ N LS++ L+ ++ LK
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
+N+AHN I ++ Y F + + ++D+S+ +I +IY
Sbjct: 129 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 165
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183
K+++L+ NP+ + SYSF S P ++ +D+S C+I TI A+ + +TG
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
++CP CSC TV+C ++ ++P GI TQVL L N I L+ +F ++ T
Sbjct: 9 SACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRL--T 62
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+ +L L +L + F +T + +L L+DN L ++P + + L I L +NP
Sbjct: 63 QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 121
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 31/158 (19%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C++ NFY IP+ + T+ LDLS N + L F +Q L L +C+++ ++
Sbjct: 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIE 68
Query: 97 DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
D A++ ++++ L L+ N LS++ L+ ++ LK
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
+N+AHN I ++ Y F + + ++D+S+ +I +IY
Sbjct: 129 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 165
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183
K+++L+ NP+ + SYSF S P ++ +D+S C+I TI A+ + +TG
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 57 QVLDLSSNNI--NVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
+VL ++ N+ N L +IF ++ N+ L L +C+LE + AF ++++ L+++ N
Sbjct: 448 EVLKMAGNSFQENFL-PDIFTEL--RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Query: 115 LLSTVPSLIY--IPYLKSINLAHNP 137
L +VP I+ + L+ I L NP
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTNP 529
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 31/158 (19%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C++ NFY IP+ + T+ LDLS N + L F +Q L L +C+++ ++
Sbjct: 35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 92
Query: 97 DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
D A++ ++++ L L+ N LS++ L+ ++ LK
Sbjct: 93 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 152
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
+N+AHN I ++ Y F + + ++D+S+ +I +IY
Sbjct: 153 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 189
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183
K+++L+ NP+ + SYSF S P ++ +D+S C+I TI A+ + +TG
Sbjct: 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 109
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 31/158 (19%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C++ NFY IP+ + T+ LDLS N + L F +Q L L +C+++ ++
Sbjct: 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 68
Query: 97 DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
D A++ ++++ L L+ N LS++ L+ ++ LK
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
+N+AHN I ++ Y F + + ++D+S+ +I +IY
Sbjct: 129 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 165
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183
K+++L+ NP+ + SYSF S P ++ +D+S C+I TI A+ + +TG
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 31/169 (18%)
Query: 26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKL 85
G C T +C + NFY IP+ + T+ LDLS N + L F +Q L
Sbjct: 1 GSPCVEVVPNITYQCEELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSF--FSFPELQVL 58
Query: 86 YLRKCKLEFVDDRAFRGVTNMDELDLSDNL-----------LSTVPSLI----------- 123
L +C+++ ++D A++ ++++ L L+ N LS++ L+
Sbjct: 59 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 118
Query: 124 ----YIPYLKSINLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
++ LK +N+AHN I ++ Y F + + ++D+S+ +I +IY
Sbjct: 119 FPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 166
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183
K+++L+ NP+ + SYSF S P ++ +D+S C+I TI A+ + +TG
Sbjct: 32 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 86
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
+CP CSC TV+C ++ ++P GI TQVL L N I L+ +F ++ T
Sbjct: 2 ACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRL--TQ 55
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+ +L L +L + F +T + +L L+DN L ++P + + L I L +NP
Sbjct: 56 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
+CP CSC TV+C ++ ++P GI TQVL L N I L+ +F ++ T
Sbjct: 2 ACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRL--TQ 55
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+ +L L +L + F +T + +L L+DN L ++P + + L I L +NP
Sbjct: 56 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNP 113
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 6/151 (3%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C + K T C + +P GI +Q + L N I+ + F N+
Sbjct: 1 CPGACVC-YNEPKVTTSCPQQGLQAVPTGIPASSQRIFLHGNRISYVPAASF--QSCRNL 57
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL-LSTVPSLIY--IPYLKSINLAHNPIH 139
L+L L +D AF G+T +++LDLSDN L V + + +L +++L +
Sbjct: 58 TILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQ 117
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
++ F+ ++Y+ + + + + F
Sbjct: 118 ELGPGLFRGLAALQYLYLQDNNLQALPDNTF 148
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAH 135
G+ +Q LYL+ L+ + D FR + N+ L L N + +VP + + L + L
Sbjct: 126 GLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQ 185
Query: 136 NPIHQISSYSFQ 147
N + ++ ++F+
Sbjct: 186 NHVARVHPHAFR 197
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 60 DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
DLS + I L K +F T++++L L + ++ +DD AF G+T++ +L+LS N L ++
Sbjct: 281 DLSKSKIFALLKSVFSHF--TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI 338
Query: 120 PSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
S ++ + L+ ++L++N I + SF P ++ + + Q+ ++ F
Sbjct: 339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 10/165 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP CSC + C + ++P GI L+L SN + L +F ++ T +
Sbjct: 1 CPSRCSCSGTE----IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKL--TQL 54
Query: 83 QKLYLRKCKLEFVD--DRAFRGVTNMDELDLSDNLLSTVPS-LIYIPYLKSINLAHNPIH 139
KL L L F ++ G T++ LDLS N + T+ S + + L+ ++ H+ +
Sbjct: 55 TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 114
Query: 140 QISSYS-FQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183
Q+S +S F S + Y+D+S+ ++ F G + + G
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 6/151 (3%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C + K T C + +P GI +Q + L N I+ + F N+
Sbjct: 2 CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASF--RACRNL 58
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN--LLSTVPSLIY-IPYLKSINLAHNPIH 139
L+L L +D AF G+ +++LDLSDN L S P+ + + L +++L +
Sbjct: 59 TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
++ F+ ++Y+ + + + + + F
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTF 149
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAH 135
G+ +Q LYL+ L+ + D FR + N+ L L N +S+VP + + L + L
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186
Query: 136 NPIHQISSYSFQ 147
N + + ++F+
Sbjct: 187 NRVAHVHPHAFR 198
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 6/151 (3%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C + K T C + +P GI +Q + L N I+ + F N+
Sbjct: 1 CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASF--RACRNL 57
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN--LLSTVPSLIY-IPYLKSINLAHNPIH 139
L+L L +D AF G+ +++LDLSDN L S P+ + + L +++L +
Sbjct: 58 TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 117
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
++ F+ ++Y+ + + + + + F
Sbjct: 118 ELGPGLFRGLAALQYLYLQDNALQALPDDTF 148
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAH 135
G+ +Q LYL+ L+ + D FR + N+ L L N +S+VP + + L + L
Sbjct: 126 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 185
Query: 136 NPIHQISSYSFQ 147
N + + ++F+
Sbjct: 186 NRVAHVHPHAFR 197
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 15/144 (10%)
Query: 43 RNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102
R+F +IP G+ + LDLS N I + N+Q L L+ ++ ++ AF
Sbjct: 41 RSFTSIPSGLTAAMKSLDLSFNKITYIGHGDL--RACANLQVLILKSSRINTIEGDAFYS 98
Query: 103 VTNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNC 160
+ +++ LDLSDN LS++ S + P LK +NL NP + S + +++N
Sbjct: 99 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-------FPNLTNL 151
Query: 161 QIHTIYS-EAFYGSDQIRRPTITG 183
Q I + E F +IRR G
Sbjct: 152 QTLRIGNVETF---SEIRRIDFAG 172
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 24 PLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQ 83
P+ SC+W R + + I +VLD+S+NN++ + + +Q
Sbjct: 427 PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS------FSLFLPRLQ 480
Query: 84 KLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+LY+ + KL+ + D + V + + ++ N L +VP I+ + L+ I L NP
Sbjct: 481 ELYISRNKLKTLPDASLFPV--LLVMKIASNQLKSVPDGIFDRLTSLQKIWLHTNP 534
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 79/157 (50%), Gaps = 31/157 (19%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C+D+ +P+ I T+ +DLS N + +L+ F + +Q L L +C++E ++
Sbjct: 15 TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSF--SNFSELQWLDLSRCEIETIE 72
Query: 97 DRAFRGVTNMDELDLSDNL-----------LSTVPSLIYIP---------------YLKS 130
D+A+ G+ ++ L L+ N L+++ +L+ + LK
Sbjct: 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTI 165
+N+AHN IH ++ +Y F + + ++D+S I TI
Sbjct: 133 LNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 113 DNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
D LS VP I K+I+L+ NP+ + SYSF + ++++D+S C+I TI +A++G
Sbjct: 20 DQKLSKVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG 78
Query: 173 SDQIRRPTITG 183
+ +TG
Sbjct: 79 LHHLSNLILTG 89
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 15/144 (10%)
Query: 43 RNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102
R+F +IP G+ + LDLS N I + N+Q L L+ ++ ++ AF
Sbjct: 15 RSFTSIPSGLTAAMKSLDLSFNKITYIGHGDL--RACANLQVLILKSSRINTIEGDAFYS 72
Query: 103 VTNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNC 160
+ +++ LDLSDN LS++ S + P LK +NL NP + S + +++N
Sbjct: 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-------FPNLTNL 125
Query: 161 QIHTIYS-EAFYGSDQIRRPTITG 183
Q I + E F +IRR G
Sbjct: 126 QTLRIGNVETF---SEIRRIDFAG 146
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 24 PLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQ 83
P+ SC+W R + + I +VLD+S+NN++ + + +Q
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS------FSLFLPRLQ 454
Query: 84 KLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+LY+ + KL+ + D + V + + +S N L +VP I+ + L+ I L NP
Sbjct: 455 ELYISRNKLKTLPDASLFPV--LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 79/157 (50%), Gaps = 31/157 (19%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C+D+ +P+ I T+ +DLS N + +L+ F + +Q L L +C++E ++
Sbjct: 10 TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSF--SNFSELQWLDLSRCEIETIE 67
Query: 97 DRAFRGVTNMDELDLSDNL-----------LSTVPSLIYIP---------------YLKS 130
D+A+ G+ ++ L L+ N L+++ +L+ + LK
Sbjct: 68 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 127
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTI 165
+N+AHN IH ++ +Y F + + ++D+S I TI
Sbjct: 128 LNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 163
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 113 DNLLSTVPSLIYIPY-LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
D LS VP IP K+I+L+ NP+ + SYSF + ++++D+S C+I TI +A++
Sbjct: 15 DQKLSKVPD--DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH 72
Query: 172 GSDQIRRPTITG 183
G + +TG
Sbjct: 73 GLHHLSNLILTG 84
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
A+CP CSC TV C +R+ ++P GI TQVL L N I L+ +F +T
Sbjct: 11 AACPSQCSCS----GTTVNCQERSLASVPAGIPTTTQVLHLYINQITKLEPGVF--DSLT 64
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+ L L +L + F +T + L L N L ++P ++ + L I L +NP
Sbjct: 65 QLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNP 123
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C R V+C D +P+ + DT +LDL +N I ++ F + N+
Sbjct: 25 CPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDF--KNLKNL 78
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
L L K+ + AF + ++ L LS N L +P
Sbjct: 79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Query: 38 VECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97
+ D N TIP+G+ L L N I + G+ N+ KL L + VD+
Sbjct: 176 IRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASL--KGLNNLAKLGLSFNSISAVDN 233
Query: 98 RAFRGVTNMDELDLSDNLLSTVP-SLIYIPYLKSINLAHNPIHQISSYSF 146
+ ++ EL L++N L VP L Y++ + L +N I I S F
Sbjct: 234 GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/131 (19%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 48 IPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
+PE + Q L + N I ++K +F + + +L K +++ AF+G+ +
Sbjct: 115 LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
+ ++D ++T+P + P L ++L N I ++ + S + + + +S I + +
Sbjct: 175 YIRIADTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233
Query: 168 EAFYGSDQIRR 178
+ + +R
Sbjct: 234 GSLANTPHLRE 244
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C R V+C D +P+ + DT +LDL +N I ++ F + N+
Sbjct: 25 CPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDF--KNLKNL 78
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
L L K+ + AF + ++ L LS N L +P
Sbjct: 79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Query: 38 VECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97
+ D N TIP+G+ L L N I + G+ N+ KL L + VD+
Sbjct: 176 IRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASL--KGLNNLAKLGLSFNSISAVDN 233
Query: 98 RAFRGVTNMDELDLSDNLLSTVP-SLIYIPYLKSINLAHNPIHQISSYSF 146
+ ++ EL L++N L VP L Y++ + L +N I I S F
Sbjct: 234 GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/131 (19%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 48 IPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
+PE + Q L + N I ++K +F + + +L K +++ AF+G+ +
Sbjct: 115 LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
+ ++D ++T+P + P L ++L N I ++ + S + + + +S I + +
Sbjct: 175 YIRIADTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233
Query: 168 EAFYGSDQIRR 178
+ + +R
Sbjct: 234 GSLANTPHLRE 244
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 28/139 (20%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM----- 77
CP CSC + C + ++P GI L+L SN + L +F ++
Sbjct: 1 CPSRCSC----SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTK 56
Query: 78 -----------------GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
+T + LYL + KL+ + + F +T + EL L N L +VP
Sbjct: 57 LSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116
Query: 121 SLIY--IPYLKSINLAHNP 137
I+ + L+ I L NP
Sbjct: 117 DGIFDRLTSLQKIWLHTNP 135
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 60 DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
DLS + I L K +F T++++L L + ++ +DD AF G+T++ EL L N L +V
Sbjct: 281 DLSKSKIFALLKSVFSHF--TDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSV 338
Query: 120 PSLIY--IPYLKSINLAHNP 137
P I+ + L+ I L NP
Sbjct: 339 PDGIFDRLTSLQKIWLHTNP 358
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 69 LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV--TNMDELDLSDNLLSTVP--SLIY 124
L +++ ++ T+IQ L L +L + F G+ TN+ +LDLS N L V S Y
Sbjct: 211 LTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSY 270
Query: 125 IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDM 157
+P L+ ++L +N I ++S SF +RY+ +
Sbjct: 271 LPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV-PSLIYI-PYLKSINLAHNP 137
+NI L L +L + F + + LD N +S + P L I P LK +NL HN
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 138 IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ QIS +F + +D+ + IH I S F
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNSIHKIKSNPF 117
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL--- 115
LDLS NN++ + F + +++ L L ++ + R+F G++N+ L L
Sbjct: 253 LDLSYNNLHDVGNGSF--SYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQ 310
Query: 116 ---LSTVP-----SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN--CQIHTI 165
L++ P S ++ YL+ +N+ N I S +F ++Y+ +S + T+
Sbjct: 311 SVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTL 370
Query: 166 YSEAF 170
+E F
Sbjct: 371 TNETF 375
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA--------FRGVTNMDEL 109
+LDLS+NNI + +++ G+ N++ L + L + RA +G++++ L
Sbjct: 484 ILDLSNNNIANINEDLL--EGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHIL 541
Query: 110 DLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
+L N L +P ++ + LKSINL N ++++ + F +R +++ I ++
Sbjct: 542 NLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEK 601
Query: 168 EAF 170
+ F
Sbjct: 602 DVF 604
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 79 ITNIQKLYLRKCKLEFVD--DRAFRGVTNMDELDLSDNLLSTV 119
+ ++Q+L LR+ L+ VD FR + N+ LDLS+N ++ +
Sbjct: 453 VPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANI 495
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 28/163 (17%)
Query: 29 CKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLR 88
C K G RT C + IP+ + T+VL+ S N + +Q F ++ N+ L L
Sbjct: 7 CTEKEGNRTYNCENLGLREIPDTLPNTTEVLEFSFNFLPTIQNTTFSRL--INLIFLDLT 64
Query: 89 KCKLEFVDDRAFRGVTNMDELDLSDNLL---------------------STVPSLIYIPY 127
+C++ +V + F+ ++ + L+ N L + + +L +IP
Sbjct: 65 RCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPV 124
Query: 128 -----LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
L+S++L N I I+ T ++ +D N IH I
Sbjct: 125 HNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYI 167
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 15/159 (9%)
Query: 55 DTQVLDLSSNNI--NVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
D + L+L N+ + K LQM + +++ L L C L +D +AF G+ N++ LDLS
Sbjct: 449 DLRHLNLQGNSFQDGSISKTNLLQM-VGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLS 507
Query: 113 DNLLSTVPSLIYIPYLKS--INLAHN-----PIHQISSYSFQSTPGIRY--IDMSNCQIH 163
N L T S+ + +LK +N+A N P H + + S QS + + +D + IH
Sbjct: 508 HNSL-TGDSMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTCSNIH 566
Query: 164 TI--YSEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAKG 200
I Y E + + T R + SD +L G
Sbjct: 567 FITWYKENLHKLEDSEETTCANPPSLRGVKLSDVKLHCG 605
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQ 140
++ + L+K + + FR T + ELDL+ L+ +PS I + LK + L N Q
Sbjct: 255 VESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQ 314
Query: 141 ISSYSFQSTPGIR 153
+ + S P +R
Sbjct: 315 LCQINAASFPSLR 327
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183
I + +F + ++D++ CQI+ ++ + F Q+ +TG
Sbjct: 47 IQNTTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTG 89
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 79 ITNIQKLYLRKCKLEFVD--DRAFRGVTNMDELDLSDN--LLSTVPSLIYIPYLKSINLA 134
+ N+QKL L +E D + + + ++ L+LS N L + P L+ +++A
Sbjct: 348 LENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVA 407
Query: 135 HNPIHQISSYS-FQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183
+H + +S FQ+ +R +++S+C + T G +R + G
Sbjct: 408 FTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQG 457
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHN 136
+TN+ L L +L+ + + F +TN+ EL L +N L ++P ++ + L +NLAHN
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 137 PIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIR 177
+ + F + +D+S Q+ ++ F Q++
Sbjct: 144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
L L+ N + L +F ++ TN+++L L + +L+ + D F +TN+ L+L+ N L +
Sbjct: 90 LILTGNQLQSLPNGVFDKL--TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS 147
Query: 119 VPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+P ++ + L ++L++N + + F ++ + + Q+ ++ F
Sbjct: 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF 201
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 69 LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV--TNMDELDLSDNLLSTV--PSLIY 124
L +++ L++ T+I+ L L +L + F G+ TN+ LDLS N L+ V S +
Sbjct: 216 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 275
Query: 125 IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDM 157
+P L+ L +N I + S+S +RY+++
Sbjct: 276 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 308
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 15/126 (11%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL-- 115
+LDLS NN+NV+ + F + ++ +L ++ + + G+ N+ L+L +
Sbjct: 257 MLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 314
Query: 116 ----LSTVP-----SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN--CQIHT 164
L+++P S ++ L+ +N+ N I I S F ++Y+ +SN + T
Sbjct: 315 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 374
Query: 165 IYSEAF 170
+ +E F
Sbjct: 375 LTNETF 380
Score = 33.5 bits (75), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 50 EGIDLDTQVLDLSSNNINVLQKE------IFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
EG++ ++LDL NN+ L K I+ G++++ L L + + F+ +
Sbjct: 506 EGLE-KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 564
Query: 104 TNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIHQISSYSFQSTPGIR 153
+ +DL N L+T+P+ ++ LKS+NL N I + F P R
Sbjct: 565 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF--GPAFR 614
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV-PSLIY-IPYLKSINLAHNP 137
TNI L L +L + F + + LD+ N +S + P L +P LK +NL HN
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 138 IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ Q+S +F + + + + I I + F
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 122
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VL+L N ++ L + F TN+ +L+L ++ + + F N+ LDLS N L
Sbjct: 81 KVLNLQHNELSQLSDKTF--AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 138
Query: 117 STV 119
S+
Sbjct: 139 SST 141
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 69 LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV--TNMDELDLSDNLLSTVP--SLIY 124
L +++ L++ T+I+ L L +L + F G+ TN+ LDLS N L+ V S +
Sbjct: 221 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 280
Query: 125 IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDM 157
+P L+ L +N I + S+S +RY+++
Sbjct: 281 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 313
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 15/126 (11%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL-- 115
+LDLS NN+NV+ + F + ++ +L ++ + + G+ N+ L+L +
Sbjct: 262 MLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 319
Query: 116 ----LSTVP-----SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN--CQIHT 164
L+++P S ++ L+ +N+ N I I S F ++Y+ +SN + T
Sbjct: 320 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 379
Query: 165 IYSEAF 170
+ +E F
Sbjct: 380 LTNETF 385
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 50 EGIDLDTQVLDLSSNNINVLQKE------IFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
EG++ ++LDL NN+ L K I+ G++++ L L + + F+ +
Sbjct: 511 EGLE-KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 569
Query: 104 TNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIHQISSYSFQSTPGIR 153
+ +DL N L+T+P+ ++ LKS+NL N I + F P R
Sbjct: 570 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF--GPAFR 619
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV-PSLIY-IPYLKSINLAHNP 137
TNI L L +L + F + + LD+ N +S + P L +P LK +NL HN
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 138 IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ Q+S +F + + + + I I + F
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 127
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VL+L N ++ L + F TN+ +L+L ++ + + F N+ LDLS N L
Sbjct: 86 KVLNLQHNELSQLSDKTF--AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 143
Query: 117 STV 119
S+
Sbjct: 144 SST 146
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 69 LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV--TNMDELDLSDNLLSTVP--SLIY 124
L +++ L++ T+I+ L L +L + F G+ TN+ LDLS N L+ V S +
Sbjct: 211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 270
Query: 125 IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDM 157
+P L+ L +N I + S+S +RY+++
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 15/126 (11%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL-- 115
+LDLS NN+NV+ + F + ++ +L ++ + + G+ N+ L+L +
Sbjct: 252 MLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309
Query: 116 ----LSTVP-----SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN--CQIHT 164
L+++P S ++ L+ +N+ N I I S F ++Y+ +SN + T
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369
Query: 165 IYSEAF 170
+ +E F
Sbjct: 370 LTNETF 375
Score = 33.5 bits (75), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 50 EGIDLDTQVLDLSSNNINVLQKE------IFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
EG++ ++LDL NN+ L K I+ G++++ L L + + F+ +
Sbjct: 501 EGLE-KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559
Query: 104 TNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIHQISSYSFQSTPGIR 153
+ +DL N L+T+P+ ++ LKS+NL N I + F P R
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF--GPAFR 609
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV-PSLIY-IPYLKSINLAHNP 137
TNI L L +L + F + + LD+ N +S + P L +P LK +NL HN
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 138 IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ Q+S +F + + + + I I + F
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 117
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
SC CK +G + +IP G+ + LDLS+N I + + N
Sbjct: 29 SCDRNGICKGSSG---------SLNSIPSGLTEAVKSLDLSNNRITYISNSDLQR--CVN 77
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIH 139
+Q L L + +++ +F + +++ LDLS N LS + S + P L +NL NP
Sbjct: 78 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137
Query: 140 QISSYSFQS 148
+ S S
Sbjct: 138 TLGETSLFS 146
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
SC CK +G + +IP G+ + LDLS+N I + LQ + N
Sbjct: 3 SCDRNGICKGSSG---------SLNSIPSGLTEAVKSLDLSNNRITYISNSD-LQRCV-N 51
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIH 139
+Q L L + +++ +F + +++ LDLS N LS + S + P L +NL NP
Sbjct: 52 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 111
Query: 140 QISSYSFQS 148
+ S S
Sbjct: 112 TLGETSLFS 120
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 17/108 (15%)
Query: 42 DRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101
D FY G+D + QVL+LS N + L F G+ + + L+K + + D+ F+
Sbjct: 307 DEAFY----GLD-NLQVLNLSYNLLGELYSSNF--YGLPKVAYIDLQKNHIAIIQDQTFK 359
Query: 102 GVTNMDELDLSDNLLSTVPSLIYIP----------YLKSINLAHNPIH 139
+ + LDL DN L+T+ + IP L INL N IH
Sbjct: 360 FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH 407
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 96 DDRAFRGV--TNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPG 151
D F G+ +++ LDLS + ++ S ++ + LK +NLA+N I++I+ +F
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315
Query: 152 IRYIDMSNCQIHTIYSEAFYGSDQI 176
++ +++S + +YS FYG ++
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKV 340
Score = 33.9 bits (76), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 64 NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI 123
+NI + F + ++++ L L + ++ R F + ++ L+L+ N ++ +
Sbjct: 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA 309
Query: 124 Y--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ + L+ +NL++N + ++ S +F P + YID+ I I + F
Sbjct: 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 32/50 (64%)
Query: 128 LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIR 177
++ ++L+H + ++S F++ ++ ++++ +I+ I EAFYG D ++
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 31/144 (21%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDT-----------------------Q 57
+ CP C+C V C ++ +P+GI D
Sbjct: 2 SRCPTECTCL----DTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLT 57
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
++DLS+N I+ L + F M T + L L +L + R F G+ ++ L L N +S
Sbjct: 58 LIDLSNNRISTLSNQSFSNM--TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 118 TVPSLIY--IPYLKSINLAHNPIH 139
VP + + L + + NP++
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPLY 139
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSI--NLAHN 136
+ +++ L L C L +D +AF + M +DLS N L T S+ + +LK I NLA N
Sbjct: 472 VGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSL-TCDSIDSLSHLKGIYLNLAAN 530
Query: 137 PIHQISS-----YSFQSTPGIRY--IDMSNCQIH--TIYSEAFYGSDQIRRPTITGQWKP 187
I+ IS S QST + + +D + IH T Y E + + T
Sbjct: 531 SINIISPRLLPILSQQSTINLSHNPLDCTCSNIHFLTWYKENLHKLEGSEETTCANPPSL 590
Query: 188 RQNEDSDAQLAKG 200
R + SD +L+ G
Sbjct: 591 RGVKLSDVKLSCG 603
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP----SLIYIPYLKSINLAHN 136
N++KL+L LE + N+ LDLS N + L + +L+++NL+HN
Sbjct: 332 NVKKLHLGVGCLE--------KLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHN 383
Query: 137 PIHQISSYSFQSTPGIRYIDMSNCQIH 163
+ S +F+ P + +D++ ++H
Sbjct: 384 EPLGLQSQAFKECPQLELLDLAFTRLH 410
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183
I + +F + ++D++ CQI+ I+ + F Q+ +TG
Sbjct: 45 IHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTG 87
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS-LIYIPYLKSINLAHNPIHQ 140
++ L L++ + + F+ T + ELDL+ L +PS + + LK + L+ N Q
Sbjct: 253 VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQ 312
Query: 141 ISSYSFQSTPGIRYI 155
+ S + P + ++
Sbjct: 313 LCQISAANFPSLTHL 327
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHN 136
+TN+ L L +L+ + + F +TN+ EL L +N L ++P ++ + L + L HN
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN 143
Query: 137 PIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRR 178
+ + F + +D+ N Q+ ++ F Q+++
Sbjct: 144 QLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQ 185
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
L L N + L +F ++ TN+ LYL +L+ + F +TN+ LDL +N L +
Sbjct: 114 LVLVENQLQSLPDGVFDKL--TNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS 171
Query: 119 VPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQI 176
+P ++ + LK ++L N + + F + +I + N S+ Y S I
Sbjct: 172 LPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCACSDILYLSRWI 231
Query: 177 RR 178
+
Sbjct: 232 SQ 233
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
L+ N + L +F ++ TN+++L L + +L+ + D F +TN+ L L N L ++P
Sbjct: 92 LTGNQLQSLPNGVFDKL--TNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLP 149
Query: 121 SLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
++ + L ++L +N + + F ++ + +++ Q+ ++ F
Sbjct: 150 KGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVF 201
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
QV L+ N++ + + + + IQKLY+ + ++ F+ V + L L N L
Sbjct: 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135
Query: 117 STVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
S++P I+ P L ++++++N + +I +FQ+T ++ + +S+ ++
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
Score = 33.5 bits (75), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 25/172 (14%)
Query: 25 LGCSCKWKAGKRTVE--CIDRN------FYTIPEGIDLDTQVL-----DLSSNNINVL-- 69
+G ++ R E CID N FY + ID+ TQ + D++ NN ++
Sbjct: 1 VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDV--HIDMQTQDVYFGFEDITLNNQKIVTF 58
Query: 70 ------QKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI 123
+ L ++ L L ++E +D AF + +L + N + +P +
Sbjct: 59 KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 118
Query: 124 Y--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGS 173
+ +P L + L N + + F +TP + + MSN + I + F +
Sbjct: 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 27/126 (21%)
Query: 54 LDTQVLDLSSN-NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
L +LD+ N NI+ +++ F+ + ++ L+L K ++ + + AF G T +DEL+LS
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESV-ILWLNKNGIQEIHNSAFNG-TQLDELNLS 185
Query: 113 DNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
DN N + ++ + F G +D+S +IH++ S YG
Sbjct: 186 DN---------------------NNLEELPNDVFHGASGPVILDISRTRIHSLPS---YG 221
Query: 173 SDQIRR 178
+ +++
Sbjct: 222 LENLKK 227
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 91 KLEFVDDRAFRGVTNMDELDLSDN-LLSTVPSLIY--IPYLKSINLAH-NPIHQISSYSF 146
KL + AF G +++++++S N +L + + ++ +P L I + N + I+ +F
Sbjct: 41 KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100
Query: 147 QSTPGIRYIDMSNCQI------HTIYS 167
Q+ P ++Y+ +SN I H I+S
Sbjct: 101 QNLPNLQYLLISNTGIKHLPDVHKIHS 127
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
QV L+ N++ + + + + IQKLY+ + ++ F+ V + L L N L
Sbjct: 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129
Query: 117 STVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
S++P I+ P L ++++++N + +I +FQ+T ++ + +S+ ++
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIH 139
++ L L ++E +D AF + +L + N + +P ++ +P L + L N +
Sbjct: 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIR 177
+ F +TP + + MSN + I + F + ++
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 27/126 (21%)
Query: 54 LDTQVLDLSSN-NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
L +LD+ N NI+ +++ F+ + ++ L+L K ++ + + AF G T +DEL+LS
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESV-ILWLNKNGIQEIHNCAFNG-TQLDELNLS 185
Query: 113 DNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
DN N + ++ + F G +D+S +IH++ S YG
Sbjct: 186 DN---------------------NNLEELPNDVFHGASGPVILDISRTRIHSLPS---YG 221
Query: 173 SDQIRR 178
+ +++
Sbjct: 222 LENLKK 227
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 91 KLEFVDDRAFRGVTNMDELDLSDN-LLSTVPSLIY--IPYLKSINLAH-NPIHQISSYSF 146
KL + AF G +++++++S N +L + + ++ +P L I + N + I+ +F
Sbjct: 41 KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100
Query: 147 QSTPGIRYIDMSNCQI------HTIYS 167
Q+ P ++Y+ +SN I H I+S
Sbjct: 101 QNLPNLQYLLISNTGIKHLPDVHKIHS 127
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
LDLS N LQ L + + L + +L + A RG+ + EL L N L
Sbjct: 81 TLDLSHNQ---LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 118 TVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS--EAFYGS 173
T+P L P L+ ++LA+N + ++ + G+ +D Q +++Y+ + F+GS
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLN---GLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
LDLS N LQ L + + L + +L + A RG+ + EL L N L
Sbjct: 81 TLDLSHNQ---LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 118 TVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS--EAFYGS 173
T+P L P L+ ++LA+N + ++ + G+ +D Q +++Y+ + F+GS
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLN---GLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C A V C RN +P + DT +L LS N + M T + +L
Sbjct: 5 CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLN 62
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSL-IYIPYLKSINLAHN 136
L +C+L + V + LDLS N L ++P L +P L ++++ N
Sbjct: 63 LDRCELTKLQVDGTLPV--LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 111
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
LDLS N LQ L + + L + +L + A RG+ + EL L N L
Sbjct: 82 TLDLSHNQ---LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 138
Query: 118 TVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS--EAFYGS 173
T+P L P L+ ++LA+N + ++ + G+ +D Q +++Y+ + F+GS
Sbjct: 139 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLN---GLENLDTLLLQENSLYTIPKGFFGS 195
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
LDLS N LQ L + + L + +L + A RG+ + EL L N L
Sbjct: 81 TLDLSHNQ---LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 118 TVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS--EAFYGS 173
T+P L P L+ ++LA+N + ++ + G+ +D Q +++Y+ + F+GS
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLN---GLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
LDLS N LQ L + + L + +L + A RG+ + EL L N L
Sbjct: 81 TLDLSHNQ---LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 118 TVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS--EAFYGS 173
T+P L P L+ ++LA+N + ++ + G+ +D Q +++Y+ + F+GS
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLN---GLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
LDLS N LQ L + + L + +L + A RG+ + EL L N L
Sbjct: 81 TLDLSHNQ---LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 118 TVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS--EAFYGS 173
T+P L P L+ ++LA+N + ++ + G+ +D Q +++Y+ + F+GS
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLN---GLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
LDLS N LQ L + + L + +L + A RG+ + EL L N L
Sbjct: 81 TLDLSHNQ---LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 118 TVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS--EAFYGS 173
T+P L P L+ ++LA+N + ++ + G+ +D Q +++Y+ + F+GS
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLN---GLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
LDLS N LQ L + + L + +L + A RG+ + EL L N L
Sbjct: 81 TLDLSHNQ---LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 118 TVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS--EAFYGS 173
T+P L P L+ ++LA+N + ++ + G+ +D Q +++Y+ + F+GS
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNDLTELPAGLLN---GLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
LDLS N LQ L + + L + +L + A RG+ + EL L N L
Sbjct: 81 TLDLSHNQ---LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 118 TVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS--EAFYGS 173
T+P L P L+ ++LA+N + ++ + G+ +D Q +++Y+ + F+GS
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLN---GLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
LDLS N LQ L + + L + +L + A RG+ + EL L N L
Sbjct: 81 TLDLSHNQ---LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 118 TVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS--EAFYGS 173
T+P L P L+ ++LA+N + ++ + G+ +D Q +++Y+ + F+GS
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLN---GLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+SSN + +I + +TN++ L ++ D +TN+DEL L+ N L
Sbjct: 181 LDISSNKV----SDISVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD 234
Query: 119 VPSLIYIPYLKSINLAHNPIHQISSYS 145
+ +L + L ++LA+N I ++ S
Sbjct: 235 IGTLASLTNLTDLDLANNQISNLAPLS 261
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+SSN + +I + +TN++ L ++ D +TN+DEL L+ N L
Sbjct: 177 LDISSNKV----SDISVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD 230
Query: 119 VPSLIYIPYLKSINLAHNPIHQISSYS 145
+ +L + L ++LA+N I ++ S
Sbjct: 231 IGTLASLTNLTDLDLANNQISNLAPLS 257
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+SSN + +I + +TN++ L ++ D +TN+DEL L+ N L
Sbjct: 177 LDISSNKV----SDISVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD 230
Query: 119 VPSLIYIPYLKSINLAHNPIHQISSYS 145
+ +L + L ++LA+N I ++ S
Sbjct: 231 IGTLASLTNLTDLDLANNQISNLAPLS 257
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+SSN + +I + +TN++ L ++ D +TN+DEL L+ N L
Sbjct: 178 LDISSNKV----SDISVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD 231
Query: 119 VPSLIYIPYLKSINLAHNPIHQISSYS 145
+ +L + L ++LA+N I ++ S
Sbjct: 232 IGTLASLTNLTDLDLANNQISNLAPLS 258
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+SSN + +I + +TN++ L ++ D +TN+DEL L+ N L
Sbjct: 178 LDISSNKV----SDISVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD 231
Query: 119 VPSLIYIPYLKSINLAHNPIHQISSYS 145
+ +L + L ++LA+N I ++ S
Sbjct: 232 IGTLASLTNLTDLDLANNQISNLAPLS 258
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+SSN + +I + +TN++ L ++ D +TN+DEL L+ N L
Sbjct: 182 LDISSNKV----SDISVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD 235
Query: 119 VPSLIYIPYLKSINLAHNPIHQISSYS 145
+ +L + L ++LA+N I ++ S
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLAPLS 262
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+SSN + +I + +TN++ L ++ D +TN+DEL L+ N L
Sbjct: 178 LDISSNKV----SDISVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD 231
Query: 119 VPSLIYIPYLKSINLAHNPIHQISSYS 145
+ +L + L ++LA+N I ++ S
Sbjct: 232 IGTLASLTNLTDLDLANNQISNLAPLS 258
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSI--NLAHNPI 138
++ L L C L +D AF + M+ +DLS N L T S+ + +LK I NLA N I
Sbjct: 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL-TSSSIEALSHLKGIYLNLASNHI 535
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS-LIYIPYLKSINLAHNPIH 139
N+QK Y + F + + ELDL+ LS +PS L+ + LK + L+ N
Sbjct: 260 NLQKHYFFN-----ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFE 314
Query: 140 QISSYSFQSTPGIRYIDM 157
+ S + P + ++ +
Sbjct: 315 NLCQISASNFPSLTHLSI 332
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 128 LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
+ I L N I I +F +R ID+SN QI + +AF G
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 128 LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
+ I L N I I +F +R ID+SN QI + +AF G
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78
>pdb|3RFE|A Chain A, Crystal Structure Of Glycoprotein Gpib Ectodomain
pdb|3RFE|B Chain B, Crystal Structure Of Glycoprotein Gpib Ectodomain
Length = 130
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRN--FYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGI 79
CP CSC AG V+C R + ++P +DT L L+ NN+ L + +
Sbjct: 1 PCPAPCSC---AGT-LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPA 56
Query: 80 TNIQKLYLR--KCKLEFVDDRAF 100
L +C V RA+
Sbjct: 57 LRTAHLGANPWRCDCRLVPLRAW 79
>pdb|2RFO|A Chain A, Crystral Structure Of The Nucleoporin Nic96
pdb|2RFO|B Chain B, Crystral Structure Of The Nucleoporin Nic96
Length = 651
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 26/111 (23%)
Query: 63 SNNINVLQKEI-FLQMGITNIQKLYLRK------CKLEFVDDRAFRGVTNMDEL------ 109
S I+V KEI L + I++I++LY K ++E +D F DEL
Sbjct: 515 SRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPFS-----DELSARKKA 569
Query: 110 ----DLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYID 156
+L DN++ +P+L+ I +++ N IH ++ +QS+ + ID
Sbjct: 570 QDFSNLDDNIVKNIPNLLII----TLSCISNMIHILNESKYQSSTKGQQID 616
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 24 PLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNIN 67
P C W + ++ +P+G+ +VLDLSSN +N
Sbjct: 242 PSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLN 285
>pdb|2QX5|A Chain A, Structure Of Nucleoporin Nic96
pdb|2QX5|B Chain B, Structure Of Nucleoporin Nic96
Length = 661
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 26/111 (23%)
Query: 63 SNNINVLQKEI-FLQMGITNIQKLYLRK------CKLEFVDDRAFRGVTNMDEL------ 109
S I+V KEI L + I++I++LY K ++E +D F DEL
Sbjct: 525 SRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPFS-----DELSARKKA 579
Query: 110 ----DLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYID 156
+L DN++ +P+L+ I +++ N IH ++ +QS+ + ID
Sbjct: 580 QDFSNLDDNIVKNIPNLLII----TLSCISNMIHILNESKYQSSTKGQQID 626
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111
+T +Q LYL K + D RA RG+ N+D L+L
Sbjct: 175 LTKLQNLYLSKNHIS--DLRALRGLKNLDVLEL 205
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQI 141
+ LY+ K+ D A + +TN+ EL L+++ +S + L + S+NL N H +
Sbjct: 90 LTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGAN--HNL 145
Query: 142 SSYS-FQSTPGIRYIDMSNCQIHTI 165
S S + G+ Y+ ++ ++ +
Sbjct: 146 SDLSPLSNXTGLNYLTVTESKVKDV 170
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 91 KLEFVDDRAFRGVTNMDE--------LDLSDNLLSTV--PSLIYIPYLKSINLAHNPIHQ 140
+LE + D + R +T++ + L LS N +S + P + ++ L+ + L+HN I
Sbjct: 31 ELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS 90
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + F + Y+D+S+ ++ I
Sbjct: 91 LDFHVFLFNQDLEYLDVSHNRLQNI 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,692,814
Number of Sequences: 62578
Number of extensions: 217326
Number of successful extensions: 758
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 453
Number of HSP's gapped (non-prelim): 233
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)