BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14766
(207 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9HCJ2|LRC4C_HUMAN Leucine-rich repeat-containing protein 4C OS=Homo sapiens GN=LRRC4C
PE=1 SV=1
Length = 640
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 91/163 (55%), Gaps = 7/163 (4%)
Query: 18 VTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM 77
V +CP CSC + K V C+ +N +P+GI +T++L+L N I +++ F +
Sbjct: 42 VRAQTCPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHL 99
Query: 78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAH 135
+++ L L + + ++ AF G+ N++ L+L DN L+T+P + +Y+ LK + L +
Sbjct: 100 --RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 157
Query: 136 NPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE-AFYGSDQIR 177
NPI I SY+F P +R +D+ + + SE AF G +R
Sbjct: 158 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 200
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 6/142 (4%)
Query: 33 AGKRTVECIDRNFYTIPEGIDL---DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK 89
A T+E D TIP G + + L L +N I + F + I ++++L L +
Sbjct: 124 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR--IPSLRRLDLGE 181
Query: 90 CK-LEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQS 148
K L ++ + AF G++N+ L+L+ L +P+L + L ++L+ N + I SFQ
Sbjct: 182 LKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQG 241
Query: 149 TPGIRYIDMSNCQIHTIYSEAF 170
++ + M QI I AF
Sbjct: 242 LMHLQKLWMIQSQIQVIERNAF 263
>sp|Q8C031|LRC4C_MOUSE Leucine-rich repeat-containing protein 4C OS=Mus musculus GN=Lrrc4c
PE=1 SV=2
Length = 640
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 91/163 (55%), Gaps = 7/163 (4%)
Query: 18 VTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM 77
V +CP CSC + K V C+ +N +P+GI +T++L+L N I +++ F +
Sbjct: 42 VRAQTCPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHL 99
Query: 78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAH 135
+++ L L + + ++ AF G+ N++ L+L DN L+T+P + +Y+ LK + L +
Sbjct: 100 --RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 157
Query: 136 NPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE-AFYGSDQIR 177
NPI I SY+F P +R +D+ + + SE AF G +R
Sbjct: 158 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 200
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 6/142 (4%)
Query: 33 AGKRTVECIDRNFYTIPEGIDL---DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK 89
A T+E D TIP G + + L L +N I + F + I ++++L L +
Sbjct: 124 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR--IPSLRRLDLGE 181
Query: 90 CK-LEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQS 148
K L ++ + AF G++N+ L+L+ L +P+L + L ++L+ N + I SFQ
Sbjct: 182 LKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQG 241
Query: 149 TPGIRYIDMSNCQIHTIYSEAF 170
++ + M QI I AF
Sbjct: 242 LMHLQKLWMIQSQIQVIERNAF 263
>sp|Q9NT99|LRC4B_HUMAN Leucine-rich repeat-containing protein 4B OS=Homo sapiens GN=LRRC4B
PE=2 SV=3
Length = 713
Score = 87.4 bits (215), Expect = 6e-17, Method: Composition-based stats.
Identities = 51/159 (32%), Positives = 88/159 (55%), Gaps = 7/159 (4%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
SCP+ CSC +A + V C R+ +P I ++T+ L+L N I V++ + F + +
Sbjct: 56 SCPVACSCSNQASR--VICTRRDLAEVPASIPVNTRYLNLQENGIQVIRTDTFKHL--RH 111
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIH 139
++ L L K + ++ AF G+ +++ L+L DN L+TVP+ Y+ L+ + L +NPI
Sbjct: 112 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 171
Query: 140 QISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYGSDQIR 177
I SY+F P +R +D+ + + I AF G +R
Sbjct: 172 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 210
Score = 50.8 bits (120), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 53/83 (63%), Gaps = 4/83 (4%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
L+LS N +++++ F G+T+++KL+L ++ ++ AF + +++EL+LS N L +
Sbjct: 234 LELSGNRLDLIRPGSF--QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS 291
Query: 119 VPSLIYIPY--LKSINLAHNPIH 139
+P ++ P L+ ++L HNP H
Sbjct: 292 LPHDLFTPLHRLERVHLNHNPWH 314
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Query: 37 TVECIDRNFYTIP-EGIDLDTQV--LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-L 92
T+E D T+P + + +++ L L +N I + F + + ++++L L + K L
Sbjct: 138 TLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNR--VPSLRRLDLGELKRL 195
Query: 93 EFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGI 152
E++ + AF G+ N+ L+L L +P+L + L+ + L+ N + I SFQ +
Sbjct: 196 EYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSL 255
Query: 153 RYIDMSNCQIHTIYSEAF 170
R + + + Q+ TI AF
Sbjct: 256 RKLWLMHAQVATIERNAF 273
>sp|P0CC10|LRC4B_RAT Leucine-rich repeat-containing protein 4B OS=Rattus norvegicus
GN=Lrrc4b PE=1 SV=1
Length = 709
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 7/165 (4%)
Query: 16 ASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFL 75
S SCP CSC +A + V C R +P I ++T+ L+L N+I V++ + F
Sbjct: 52 GSPPATSCPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFK 109
Query: 76 QMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINL 133
+ +++ L L K + ++ AF G+ +++ L+L DN L+TVP + Y+ L+ + L
Sbjct: 110 HL--RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWL 167
Query: 134 AHNPIHQISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYGSDQIR 177
+NPI I SY+F P +R +D+ + + I AF G +R
Sbjct: 168 RNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 212
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 53/83 (63%), Gaps = 4/83 (4%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
L+LS N +++++ F G+T+++KL+L ++ ++ AF + +++EL+LS N L +
Sbjct: 236 LELSGNRLDLIRPGSF--QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS 293
Query: 119 VPSLIYIPY--LKSINLAHNPIH 139
+P ++ P L+ ++L HNP H
Sbjct: 294 LPHDLFTPLHRLERVHLNHNPWH 316
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 68/136 (50%), Gaps = 2/136 (1%)
Query: 37 TVECIDRNFYTIP-EGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEF 94
T+E D T+P + + +++ +L N + + + ++++L L + K LE+
Sbjct: 140 TLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEY 199
Query: 95 VDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRY 154
+ + AF G+ N+ L+L L +P+L + L+ + L+ N + I SFQ +R
Sbjct: 200 ISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRK 259
Query: 155 IDMSNCQIHTIYSEAF 170
+ + + Q+ TI AF
Sbjct: 260 LWLMHAQVATIERNAF 275
>sp|P0C192|LRC4B_MOUSE Leucine-rich repeat-containing protein 4B OS=Mus musculus GN=Lrrc4b
PE=1 SV=1
Length = 709
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 7/165 (4%)
Query: 16 ASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFL 75
S SCP CSC +A + V C R +P I ++T+ L+L N+I V++ + F
Sbjct: 52 GSPPATSCPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFK 109
Query: 76 QMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINL 133
+ +++ L L K + ++ AF G+ +++ L+L DN L+TVP + Y+ L+ + L
Sbjct: 110 HL--RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWL 167
Query: 134 AHNPIHQISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYGSDQIR 177
+NPI I SY+F P +R +D+ + + I AF G +R
Sbjct: 168 RNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 212
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 53/83 (63%), Gaps = 4/83 (4%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
L+LS N +++++ F G+T+++KL+L ++ ++ AF + +++EL+LS N L +
Sbjct: 236 LELSGNRLDLIRPGSF--QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS 293
Query: 119 VPSLIYIPY--LKSINLAHNPIH 139
+P ++ P L+ ++L HNP H
Sbjct: 294 LPHDLFTPLHRLERVHLNHNPWH 316
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 68/136 (50%), Gaps = 2/136 (1%)
Query: 37 TVECIDRNFYTIP-EGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEF 94
T+E D T+P + + +++ +L N + + + ++++L L + K LE+
Sbjct: 140 TLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEY 199
Query: 95 VDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRY 154
+ + AF G+ N+ L+L L +P+L + L+ + L+ N + I SFQ +R
Sbjct: 200 ISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRK 259
Query: 155 IDMSNCQIHTIYSEAF 170
+ + + Q+ TI AF
Sbjct: 260 LWLMHAQVATIERNAF 275
>sp|Q45R42|LRRC4_RAT Leucine-rich repeat-containing protein 4 OS=Rattus norvegicus
GN=Lrrc4 PE=1 SV=1
Length = 652
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 83/154 (53%), Gaps = 7/154 (4%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
+CP CSC + K V C R +P+GI +T+ L+L NNI ++Q + F + +
Sbjct: 44 NCPSVCSCSNQFSK--VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLH--H 99
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIH 139
++ L L + + ++ AF G+ +++ L+L DN L+ +PS Y+ L+ + L +NPI
Sbjct: 100 LEVLQLGRNAIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 159
Query: 140 QISSYSFQSTPGIRYIDMSNC-QIHTIYSEAFYG 172
I SY+F P + +D+ ++ I AF G
Sbjct: 160 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 193
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 2/142 (1%)
Query: 33 AGKRTVECIDRNFYTIPEG-IDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK 91
A T+E D IP G + +++ +L N + + + ++ +L L + K
Sbjct: 122 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK 181
Query: 92 -LEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTP 150
LE++ + AF G+ N+ L+L + +P+L + L+ + ++ N +I SF
Sbjct: 182 KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLS 241
Query: 151 GIRYIDMSNCQIHTIYSEAFYG 172
++ + + N Q+ I AF G
Sbjct: 242 SLKKLWVMNSQVSLIERNAFDG 263
>sp|Q9HBW1|LRRC4_HUMAN Leucine-rich repeat-containing protein 4 OS=Homo sapiens GN=LRRC4
PE=1 SV=2
Length = 653
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 83/154 (53%), Gaps = 7/154 (4%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
+CP CSC + K V C R +P+GI +T+ L+L NNI ++Q + F + +
Sbjct: 45 NCPSVCSCSNQFSK--VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLH--H 100
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIH 139
++ L L + + ++ AF G+ +++ L+L DN L+ +PS Y+ L+ + L +NPI
Sbjct: 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160
Query: 140 QISSYSFQSTPGIRYIDMSNC-QIHTIYSEAFYG 172
I SY+F P + +D+ ++ I AF G
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 2/142 (1%)
Query: 33 AGKRTVECIDRNFYTIPEG-IDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK 91
A T+E D IP G + +++ +L N + + + ++ +L L + K
Sbjct: 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK 182
Query: 92 -LEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTP 150
LE++ + AF G+ N+ L+L + +P+L + L+ + ++ N +I SF
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242
Query: 151 GIRYIDMSNCQIHTIYSEAFYG 172
++ + + N Q+ I AF G
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDG 264
>sp|Q99PH1|LRRC4_MOUSE Leucine-rich repeat-containing protein 4 OS=Mus musculus GN=Lrrc4
PE=1 SV=2
Length = 652
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 83/154 (53%), Gaps = 7/154 (4%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
+CP CSC + K V C R +P+GI +T+ L+L NNI ++Q + F + +
Sbjct: 44 NCPSVCSCSNQFSK--VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLH--H 99
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIH 139
++ L L + + ++ AF G+ +++ L+L DN L+ +PS Y+ L+ + L +NPI
Sbjct: 100 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 159
Query: 140 QISSYSFQSTPGIRYIDMSNC-QIHTIYSEAFYG 172
I SY+F P + +D+ ++ I AF G
Sbjct: 160 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 193
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 2/142 (1%)
Query: 33 AGKRTVECIDRNFYTIPEG-IDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK 91
A T+E D IP G + +++ +L N + + + ++ +L L + K
Sbjct: 122 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK 181
Query: 92 -LEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTP 150
LE++ + AF G+ N+ L+L + +P+L + L+ + ++ N +I SF
Sbjct: 182 KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLS 241
Query: 151 GIRYIDMSNCQIHTIYSEAFYG 172
++ + + N Q+ I AF G
Sbjct: 242 SLKKLWVMNSQVSLIERNAFDG 263
>sp|Q504C1|LRIT2_DANRE Leucine-rich repeat, immunoglobulin-like domain and transmembrane
domain-containing protein 2 OS=Danio rerio GN=lrit2 PE=2
SV=2
Length = 561
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 6/172 (3%)
Query: 1 MCHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLD 60
+C F L VF +L S + C GCSC R++ C++ IP+G+ D +
Sbjct: 3 VCVLFHLIVF--CILISHISSECFPGCSCGTDRHGRSLTCMETALTGIPDGLPEDLTKIR 60
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
+ + ++ L + +F + ++ L+L + ++ ++ G+ N+ EL L N L +VP
Sbjct: 61 IEKSQLSELPEAVFSH--VKALKHLWLNFNDIAIINIKSLEGLANLTELRLQGNKLRSVP 118
Query: 121 SLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ P LK ++L HN I + ++ + PG+ Y+D+S+ Q+ I + F
Sbjct: 119 WTAFEETPNLKILDLKHNRIDALPEHALKFLPGLTYLDLSSNQLSVISKDVF 170
>sp|Q9VZZ4|PXDN_DROME Peroxidasin OS=Drosophila melanogaster GN=Pxn PE=1 SV=1
Length = 1527
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 9/170 (5%)
Query: 16 ASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFL 75
V CP GC+C +RTV CI +P+ + DTQ LDL N+I L F
Sbjct: 19 GGVQSVYCPAGCTCL----ERTVRCIRAKLSAVPK-LPQDTQTLDLRFNHIEELPANAF- 72
Query: 76 QMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL 133
G+ + L+L +L ++ D A G+T + + L++N LS +P+ I+ +P L++I L
Sbjct: 73 -SGLAQLTTLFLNDNELAYLQDGALNGLTALRFVYLNNNRLSRLPATIFQRMPRLEAIFL 131
Query: 134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183
+N I Q+ + F + P + + M N ++ + + F + ++R + G
Sbjct: 132 ENNDIWQLPAGLFDNLPRLNRLIMYNNKLTQLPVDGFNRLNNLKRLRLDG 181
>sp|Q9WVB4|SLIT3_MOUSE Slit homolog 3 protein OS=Mus musculus GN=Slit3 PE=2 SV=2
Length = 1523
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 13 TLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKE 72
++L+ A+CP C+C +V+C +P GI + + LDL NNI + K
Sbjct: 24 SILSGPPAAACPTKCTCSAA----SVDCHGLGLRAVPRGIPRNAERLDLDRNNITRITKM 79
Query: 73 IFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKS 130
F G+ N++ L+L ++ ++ AF+ + ++ L L+ N L +P L++ P L
Sbjct: 80 DF--AGLKNLRVLHLEDNQVSIIERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTR 137
Query: 131 INLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
++L+ N I I +F+ G++ + + N I I AF
Sbjct: 138 LDLSENQIQGIPRKAFRGVTGVKNLQLDNNHISCIEDGAF 177
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 7/150 (4%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C+ V+C ++ IP + T L L+ N+I+VL+ + + N+
Sbjct: 505 CPEKCRCEGT----IVDCSNQKLARIPSHLPEYTTDLRLNDNDISVLEATGIFKK-LPNL 559
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQ 140
+K+ L +++ V + AF G + EL L+ N L T+ ++ + LK++ L N I
Sbjct: 560 RKINLSNNRIKEVREGAFDGAAGVQELMLTGNQLETMHGRMFRGLSSLKTLMLRSNLISC 619
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+S+ +F +R + + + +I TI AF
Sbjct: 620 VSNDTFAGLSSVRLLSLYDNRITTITPGAF 649
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 31/142 (21%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDT-----------------------QVL 59
CP C+C + V C +R + +P+G+ D ++
Sbjct: 725 CPEQCTCV----ETVVRCSNRGLHALPKGMPKDVTELYLEGNHLTAVPKELSAFRQLTLI 780
Query: 60 DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
DLS+N+I++L F M +++ L L +L + AF G+ ++ L L N +S+V
Sbjct: 781 DLSNNSISMLTNHTFSNM--SHLSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDISSV 838
Query: 120 P--SLIYIPYLKSINLAHNPIH 139
P S + L + L NP+H
Sbjct: 839 PEGSFNDLTSLSHLALGTNPLH 860
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LDLS N I + ++ F G+T ++ L L + ++D AFR + +++ L L++N +S
Sbjct: 138 LDLSENQIQGIPRKAF--RGVTGVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISR 195
Query: 119 --VPSLIYIPYLKSINLAHNPIH 139
V S ++P ++++ L N ++
Sbjct: 196 ILVTSFNHMPKIRTLRLHSNHLY 218
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
L++ I+ ++ + F G + + + +C ++ V R + +D S+ L+ +P
Sbjct: 470 LANKRISQIKSKKFRCSGSEDYRNRFSSECFMDLVCPEKCRCEGTI--VDCSNQKLARIP 527
Query: 121 SLIYIP-YLKSINLAHNPIHQISSYS-FQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRR 178
S ++P Y + L N I + + F+ P +R I++SN +I + AF G+ ++
Sbjct: 528 S--HLPEYTTDLRLNDNDISVLEATGIFKKLPNLRKINLSNNRIKEVREGAFDGAAGVQE 585
Query: 179 PTITG 183
+TG
Sbjct: 586 LMLTG 590
>sp|O88280|SLIT3_RAT Slit homolog 3 protein OS=Rattus norvegicus GN=Slit3 PE=2 SV=1
Length = 1523
Score = 74.7 bits (182), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 13 TLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKE 72
++L+ A+CP C+C +V+C +P GI + + LDL NNI + K
Sbjct: 24 SILSGPPAAACPTKCTCSAA----SVDCHGLGLRAVPRGIPRNAERLDLDRNNITRITKM 79
Query: 73 IFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKS 130
F G+ N++ L+L ++ ++ AF+ + ++ L L+ N L +P L++ P L
Sbjct: 80 DF--TGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTR 137
Query: 131 INLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
++L+ N I I +F+ G++ + + N I I AF
Sbjct: 138 LDLSENQIQGIPRKAFRGVTGVKNLQLDNNHISCIEDGAF 177
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 7/150 (4%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C+ V+C ++ IP + T L L+ N+I VL+ + + N+
Sbjct: 505 CPEKCRCEGT----IVDCSNQKLSRIPSHLPEYTTDLRLNDNDIAVLEATGIFKK-LPNL 559
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQ 140
+K+ L +++ V + AF G + EL L+ N L T+ ++ + LK++ L N I
Sbjct: 560 RKINLSNNRIKEVREGAFDGAAGVQELMLTGNQLETMHGRMFRGLSGLKTLMLRSNLISC 619
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+++ +F +R + + + +I TI AF
Sbjct: 620 VNNDTFAGLSSVRLLSLYDNRITTISPGAF 649
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 31/142 (21%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDT-----------------------QVL 59
CP C+C + V C +R +T+P+G+ D ++
Sbjct: 725 CPEQCTCV----ETVVRCSNRGLHTLPKGMPKDVTELYLEGNHLTAVPKELSTFRQLTLI 780
Query: 60 DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
DLS+N+I++L F M +++ L L +L + AF G+ ++ L L N +S+V
Sbjct: 781 DLSNNSISMLTNHTFSNM--SHLSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDISSV 838
Query: 120 P--SLIYIPYLKSINLAHNPIH 139
P S + L + L NP+H
Sbjct: 839 PEGSFNDLTSLSHLALGINPLH 860
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LDLS N I + ++ F G+T ++ L L + ++D AFR + +++ L L++N +S
Sbjct: 138 LDLSENQIQGIPRKAF--RGVTGVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISR 195
Query: 119 --VPSLIYIPYLKSINLAHNPIH 139
V S ++P ++++ L N ++
Sbjct: 196 ILVTSFNHMPKIRTLRLHSNHLY 218
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
L++ I+ ++ + F G + + + +C ++ V R + +D S+ LS +P
Sbjct: 470 LANKRISQIKSKKFRCSGSEDYRNRFSSECFMDLVCPEKCRCEGTI--VDCSNQKLSRIP 527
Query: 121 SLIYIP-YLKSINLAHNPIHQISSYS-FQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRR 178
S ++P Y + L N I + + F+ P +R I++SN +I + AF G+ ++
Sbjct: 528 S--HLPEYTTDLRLNDNDIAVLEATGIFKKLPNLRKINLSNNRIKEVREGAFDGAAGVQE 585
Query: 179 PTITG 183
+TG
Sbjct: 586 LMLTG 590
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
SCP CSC V+C + IP + + L N+I + F+Q
Sbjct: 279 SCPSACSCS----NNIVDCRGKGLTEIPANLPEGIVEIRLEQNSIKSIPAGAFIQY--KK 332
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY 124
++++ + K ++ + AF+G+ ++ L L N ++ +P ++
Sbjct: 333 LKRIDISKNQISDIAPDAFQGLKSLTSLVLYGNKITEIPKGLF 375
>sp|A8WHP9|LRRC3_DANRE Leucine-rich repeat-containing protein 3 OS=Danio rerio GN=lrrc3
PE=2 SV=1
Length = 266
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 3/136 (2%)
Query: 5 FILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSN 64
I + L + SV +CP C C + V+C RN IP + DT L LSSN
Sbjct: 21 LIFRLLLAVICLSVPSFACPKSCHCSERNSLTVVQCSSRNLEEIPPDLPHDTVSLQLSSN 80
Query: 65 NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT-NMDELDLSDNLLSTVPSLI 123
+I + + F + +Q+L L + +E VD AF+GV+ ++ LDLS N + VP
Sbjct: 81 HITKIPNQAF--KNLPWLQELDLSRNAIETVDAGAFKGVSESLRTLDLSHNHMQGVPKEA 138
Query: 124 YIPYLKSINLAHNPIH 139
+ I+L++NP H
Sbjct: 139 FARLHAKISLSNNPWH 154
>sp|Q5RKR3|ISLR2_MOUSE Immunoglobulin superfamily containing leucine-rich repeat protein 2
OS=Mus musculus GN=Islr2 PE=1 SV=1
Length = 745
Score = 69.3 bits (168), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
+CP C+C K + +C + +PEG+ + L LS+N I VL++ F+ +T
Sbjct: 19 ACPEPCACVDKYAHQFADCAYKELREVPEGLPANVTTLSLSANKITVLRRGAFVN--VTQ 76
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPIH 139
+ L+L ++ V+ A ++ + LDLS NL+S P L + L+ + + HN +
Sbjct: 77 VTSLWLAHSEVRTVESGALAVLSQLKNLDLSHNLISNFPWSDLRNLSALQLLKMNHNRLG 136
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ + + P +R + ++N ++ T+ F
Sbjct: 137 SLPRDALGALPDLRSLRINNNRLRTLEPGTF 167
>sp|Q8VCH9|LRC3B_MOUSE Leucine-rich repeat-containing protein 3B OS=Mus musculus GN=Lrrc3b
PE=2 SV=1
Length = 259
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 1 MCHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLD 60
MC +L F+L +L + + CP GC C +G V C + N IP + +T +L
Sbjct: 14 MC--LLLQSFVLMILCFHSASMCPKGCLCS-SSGGLNVTCSNANLKEIPRDLPPETVLLY 70
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT-NMDELDLSDNLLSTV 119
L SN I + EIF + ++ L L K +EF+D+ AF+GV + LDLSDN + +V
Sbjct: 71 LDSNQITSIPNEIF--KDLHQLRVLNLSKNGIEFIDEHAFKGVAETLQTLDLSDNRIQSV 128
Query: 120 PSLIYIPYLKSINLAHNPIH 139
+ +A+NP H
Sbjct: 129 HKNAFNNLKARARIANNPWH 148
>sp|Q96PB8|LRC3B_HUMAN Leucine-rich repeat-containing protein 3B OS=Homo sapiens GN=LRRC3B
PE=2 SV=1
Length = 259
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 1 MCHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLD 60
MC +L F+L +L + + CP GC C +G V C + N IP + +T +L
Sbjct: 14 MC--LLLQSFVLMILCFHSASMCPKGCLCS-SSGGLNVTCSNANLKEIPRDLPPETVLLY 70
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT-NMDELDLSDNLLSTV 119
L SN I + EIF + ++ L L K +EF+D+ AF+GV + LDLSDN + +V
Sbjct: 71 LDSNQITSIPNEIF--KDLHQLRVLNLSKNGIEFIDEHAFKGVAETLQTLDLSDNRIQSV 128
Query: 120 PSLIYIPYLKSINLAHNPIH 139
+ +A+NP H
Sbjct: 129 HKNAFNNLKARARIANNPWH 148
>sp|A6H789|LRC3B_BOVIN Leucine-rich repeat-containing protein 3B OS=Bos taurus GN=LRRC3B
PE=2 SV=1
Length = 259
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 1 MCHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLD 60
MC +L F+L +L + + CP GC C +G V C + N IP + +T +L
Sbjct: 14 MC--LLLQSFVLMILCFHSASMCPKGCLCS-SSGGLNVTCSNANLKEIPRDLPPETVLLY 70
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT-NMDELDLSDNLLSTV 119
L SN I + EIF + ++ L L K +EF+D+ AF+GV + LDLSDN + +V
Sbjct: 71 LDSNQITSIPNEIF--KDLHQLRVLNLSKNGIEFIDEHAFKGVAETLQTLDLSDNRIQSV 128
Query: 120 PSLIYIPYLKSINLAHNPIH 139
+ +A+NP H
Sbjct: 129 HKNAFNNLKARARIANNPWH 148
>sp|A2ARI4|LGR4_MOUSE Leucine-rich repeat-containing G-protein coupled receptor 4 OS=Mus
musculus GN=Lgr4 PE=2 SV=1
Length = 951
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 12/157 (7%)
Query: 6 ILSVFLLTLLASVTQAS-----CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLD 60
+L F L LL S + C CSC G R V+C + +PEG+ TQ LD
Sbjct: 7 LLCFFALGLLGSAGPSGAAPPLCAAPCSCD---GDRRVDCSGKGLTAVPEGLSAFTQALD 63
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
+S NNI L ++ F +++L L L F+ +A G+ + L L +N L TVP
Sbjct: 64 ISMNNITQLPEDAFKNFPF--LEELQLAGNDLSFIHPKALSGLKELKVLTLQNNQLKTVP 121
Query: 121 S--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYI 155
S + + L+S+ L N I + SF+ +R++
Sbjct: 122 SEAIRGLSALQSLRLDANHITSVPEDSFEGLVQLRHL 158
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%)
Query: 78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNP 137
G +++ L L K+ + D + + LDLS N + +PS L+ I+L N
Sbjct: 317 GTVHLESLTLTGTKISSIPDDLCQNQKMLRTLDLSYNDIRDLPSFNGCRALEEISLQRNQ 376
Query: 138 IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
I I +FQ +R +D+S I I+S AF
Sbjct: 377 ISLIKETTFQGLTSLRILDLSRNLIREIHSGAF 409
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 34 GKRTVECIDRNFYTI---PEGIDL--DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLR 88
G +E +D N+ + P+ I + L SN+I+V+ F G ++ ++L
Sbjct: 223 GLDNLETLDLNYNNLDEFPQAIKALPSLKELGFHSNSISVIPDGAF--AGNPLLRTIHLY 280
Query: 89 KCKLEFVDDRAFRGVTNMDELDL-SDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQ 147
L FV + AF ++++ L + +L+ P+L +L+S+ L I I Q
Sbjct: 281 DNPLSFVGNSAFHNLSDLHSLVIRGASLVQWFPNLAGTVHLESLTLTGTKISSIPDDLCQ 340
Query: 148 STPGIRYIDMS 158
+ +R +D+S
Sbjct: 341 NQKMLRTLDLS 351
>sp|A4IIW9|LIGO1_XENTR Leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 1 OS=Xenopus tropicalis
GN=lingo1 PE=2 SV=1
Length = 606
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 33/189 (17%)
Query: 11 LLTLLASVTQAS---CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNIN 67
LL ++ S+ S CP C C + R+V C + + +PEGI DT++LDLS N I
Sbjct: 13 LLIVVGSILSGSASGCPQRCDCSPQ--DRSVLCHRKRYLDVPEGIPTDTRLLDLSKNRIK 70
Query: 68 VLQKEIF--------LQM--------------GITNIQKLYLRKCKLEFVDDRAFRGVTN 105
L ++ F L++ G+ N++ L LR +L+ + F G++N
Sbjct: 71 ALNQDEFSAFPYLEELELNENIVSIIEPGAFNGLFNLRSLGLRSNRLKLIPLGVFTGLSN 130
Query: 106 MDELDLSDN----LLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQ 161
+ +LD+S+N LL + +Y LKS+ + N + IS +F+ + + + C
Sbjct: 131 LTQLDISENKIVILLDDMFQDLY--NLKSLEVGDNDLVYISHRAFRGLNSLEELTLEKCN 188
Query: 162 IHTIYSEAF 170
+ ++ +EA
Sbjct: 189 LTSVPTEAL 197
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L+LS N I ++ + ++ +Q+ +L +L V+ AFRG+ ++ L++S N L
Sbjct: 276 RFLNLSYNPITAVEGSMLYEL--LRLQEFHLVGGQLSVVEPYAFRGLNHLKVLNVSSNYL 333
Query: 117 STV--PSLIYIPYLKSINLAHNPI 138
ST+ S + L+++ L NP+
Sbjct: 334 STLEESSFHSVGNLETLILDKNPL 357
Score = 30.8 bits (68), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLY----LRKCKLEFVDDRAFRGV--TNMDELDL 111
L L NINV++ F ++LY L ++D G+ N+ L +
Sbjct: 205 TLKLRYLNINVIRDYSF--------KRLYRLKNLEIAHWPYLDTMTSNGLYGLNLTSLSI 256
Query: 112 SDNLLSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
+ + LS++P ++ ++ YL+ +NL++NPI + ++ + Q+ + A
Sbjct: 257 THSNLSSIPYVAIRHLVYLRFLNLSYNPITAVEGSMLYELLRLQEFHLVGGQLSVVEPYA 316
Query: 170 FYGSDQIRRPTITGQWKPRQNEDS 193
F G + ++ ++ + E S
Sbjct: 317 FRGLNHLKVLNVSSNYLSTLEESS 340
>sp|Q3URE9|LIGO2_MOUSE Leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 2 OS=Mus musculus GN=Lingo2
PE=2 SV=1
Length = 606
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 29/188 (15%)
Query: 7 LSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNI 66
L+V LL + +++ CP C C A ++V C R IPEGI ++T++LDLS N +
Sbjct: 15 LAVVLLLMGSTI---GCPARCECS--AQNKSVSCHRRRLLAIPEGIPIETKILDLSKNRL 69
Query: 67 NVLQKEIFLQM----------------------GITNIQKLYLRKCKLEFVDDRAFRGVT 104
+ E F+ + N++ L L+ +L+ V F G++
Sbjct: 70 KSINPEEFISYPLLEEIDLSDNIIANVEPGAFNNLFNLRSLRLKGNRLKLVPLGVFTGLS 129
Query: 105 NMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
N+ +LD+S+N + + ++ + LKS+ + N + IS +F + + + C +
Sbjct: 130 NLTKLDISENKIVILLDYMFQDLHNLKSLEVGDNDLVYISHRAFSGLLSLEQLTLEKCNL 189
Query: 163 HTIYSEAF 170
+ +EA
Sbjct: 190 TAVPTEAL 197
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 105 NMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
N+ L +++ LSTVP L + + YL +NL++NPI I + F ++ + + Q+
Sbjct: 250 NLTSLSITNTNLSTVPFLAFKHLVYLTHLNLSYNPISTIEAGMFSDLIRLQELHIVGAQL 309
Query: 163 HTIYSEAFYGSDQIR 177
TI +F G +R
Sbjct: 310 RTIEPHSFQGLRFLR 324
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
L+LS N I+ ++ +F + +Q+L++ +L ++ +F+G+ + L++S NLL T
Sbjct: 278 LNLSYNPISTIEAGMFSDL--IRLQELHIVGAQLRTIEPHSFQGLRFLRVLNVSQNLLET 335
Query: 119 VPSLIYIP--YLKSINLAHNPI 138
+ ++ L+ +++ +NP+
Sbjct: 336 LEENVFSSPRALEVLSINNNPL 357
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPI 138
N+ L + L V AF+ + + L+LS N +ST+ + ++ + L+ +++ +
Sbjct: 250 NLTSLSITNTNLSTVPFLAFKHLVYLTHLNLSYNPISTIEAGMFSDLIRLQELHIVGAQL 309
Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
I +SFQ +R +++S + T+ F
Sbjct: 310 RTIEPHSFQGLRFLRVLNVSQNLLETLEENVF 341
>sp|Q50L44|LIGO1_CHICK Leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 1 OS=Gallus gallus
GN=LINGO1 PE=2 SV=1
Length = 613
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 29/187 (15%)
Query: 11 LLTLLASVTQAS---CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNIN 67
LL +L S+ S CP C C A +R V C + F +PEGI +T+ LDL N I
Sbjct: 20 LLLMLGSILSGSATGCPPRCECS--AQERAVLCHRKRFMVVPEGIPTETRQLDLGKNRIK 77
Query: 68 VLQKEIFLQM----------------------GITNIQKLYLRKCKLEFVDDRAFRGVTN 105
L ++ F + N++ L LR +L+ + F G++N
Sbjct: 78 TLNQDEFANYPHLEELELNENIISAIEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 137
Query: 106 MDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
+ +LD+S+N + + ++ + LKS+ + N + IS +F + + + C +
Sbjct: 138 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 197
Query: 164 TIYSEAF 170
+I +EA
Sbjct: 198 SIPTEAL 204
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+S N I +L +F + N++ L + L ++ RAF G+ ++++L L L++
Sbjct: 141 LDISENKIVILLDYMF--QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 198
Query: 119 VP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYG 172
+P +L ++ L + L H I+ I YSF+ ++ +++S+ + T+ S YG
Sbjct: 199 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTSNCLYG 255
Score = 34.7 bits (78), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 105 NMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
N+ L ++ L+++P S+ ++ YL+ +NL++NPI I ++ I + Q+
Sbjct: 257 NLTSLSITHCNLTSIPYVSVRHLVYLRFLNLSYNPIVTIEGSMLHDLLRLQEIQLVGGQL 316
Query: 163 HTIYSEAFYGSDQIRRPTITGQ 184
T+ AF G + +R ++G
Sbjct: 317 TTVEPFAFRGLNYLRILNVSGN 338
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L+LS N I ++ + + +Q++ L +L V+ AFRG+ + L++S NLL
Sbjct: 283 RFLNLSYNPIVTIEGSML--HDLLRLQEIQLVGGQLTTVEPFAFRGLNYLRILNVSGNLL 340
Query: 117 STVPSLIY--IPYLKSINLAHNPI 138
+T+ + + L+++ L +NP+
Sbjct: 341 TTLEESAFHSVGNLETLILDNNPL 364
>sp|Q66HV9|LIG1B_DANRE Leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 1-B OS=Danio rerio
GN=lingo1b PE=1 SV=1
Length = 622
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 31/195 (15%)
Query: 2 CHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDL 61
C + IL + L T+L+ + CP C C A +R+V C R T+PEGI +DT++LDL
Sbjct: 24 CWQPILILMLGTVLSG-SATGCPSRCECS--AQERSVVCHRRKLITLPEGIPIDTRLLDL 80
Query: 62 SSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR-------------------- 101
S N + + E FL ++ L L + + ++ AF
Sbjct: 81 SKNRLKAINPEEFLNY--PQLEDLQLNENIISVIEPGAFSNLLGLRTLGLRNNNLKLIQL 138
Query: 102 ----GVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYI 155
G++N+ LD+S+N + + ++ + LK + + N + IS +F + +
Sbjct: 139 GVFTGLSNLTRLDISENKIVILLDYMFQELYNLKELEVGDNDLVFISHRAFHGLSSLEQL 198
Query: 156 DMSNCQIHTIYSEAF 170
M C + ++ +EAF
Sbjct: 199 TMERCNLTSVPTEAF 213
>sp|Q6UXK2|ISLR2_HUMAN Immunoglobulin superfamily containing leucine-rich repeat protein 2
OS=Homo sapiens GN=ISLR2 PE=2 SV=1
Length = 745
Score = 67.4 bits (163), Expect = 6e-11, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 4/152 (2%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
SCP C+C K + +C + +PEG+ + L LS+N I VL++ F +T
Sbjct: 18 GSCPEPCACVDKYAHQFADCAYKELREVPEGLPANVTTLSLSANKITVLRRGAFAD--VT 75
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPI 138
+ L+L ++ V+ A ++ + LDLS N +S+ P L + L+ + + HN +
Sbjct: 76 QVTSLWLAHNEVRTVEPGALAVLSQLKNLDLSHNFISSFPWSDLRNLSALQLLKMNHNRL 135
Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ + + P +R + ++N ++ T+ F
Sbjct: 136 GSLPRDALGALPDLRSLRINNNRLRTLAPGTF 167
>sp|Q9MYW3|TLR4_HORSE Toll-like receptor 4 OS=Equus caballus GN=TLR4 PE=2 SV=1
Length = 843
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 31/160 (19%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C+D N Y IPE I T+ LDLS N + L F +Q L L +C++E ++
Sbjct: 37 TYQCMDLNLYKIPENIPTSTKELDLSFNPLKELGSHSF--SNFPELQVLDLSRCEIEMIE 94
Query: 97 DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
D A++G+ ++ L L+ N LS++ +L+ ++ LK
Sbjct: 95 DDAYQGLNHLSTLILTGNPIRSLALGAFSGLSSLQTLVAVETKLSSLEKFPIGHLKTLKE 154
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
+N+AHN IH ++ Y F P + ++D+SN +I I E
Sbjct: 155 LNVAHNLIHSFKLPEY-FSKMPNLEHLDLSNNKIQNISHE 193
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 35/55 (63%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183
K ++L+ NP+ ++ S+SF + P ++ +D+S C+I I +A+ G + + +TG
Sbjct: 57 KELDLSFNPLKELGSHSFSNFPELQVLDLSRCEIEMIEDDAYQGLNHLSTLILTG 111
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 45 FYTIPEGIDLDTQVLDLSSNNI--NVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102
F+ I +G+ + QVL ++ N+ N L IF +M TN+ L L KC LE V AF
Sbjct: 464 FHGIFDGL-VSLQVLKMAGNSFKDNFL-PNIFREM--TNLTTLDLSKCNLEQVSQEAFCL 519
Query: 103 VTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQ 147
+ + L++S N L + L Y P L S+ + ++I ++ +Q
Sbjct: 520 LPRLRVLNMSHNNLLFLDMLPYKP-LHSLQILDCSFNRIVAFKWQ 563
>sp|O75094|SLIT3_HUMAN Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE=2 SV=3
Length = 1523
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 8/151 (5%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
+CP C+C +V+C +P GI + + LDL NNI + K F G+ N
Sbjct: 33 ACPTKCTCSAA----SVDCHGLGLRAVPRGIPRNAERLDLDRNNITRITKMDF--AGLKN 86
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIH 139
++ L+L ++ ++ AF+ + ++ L L+ N L +P L++ P L ++L+ N I
Sbjct: 87 LRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTRLDLSENQIQ 146
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
I +F+ ++ + + N I I AF
Sbjct: 147 GIPRKAFRGITDVKNLQLDNNHISCIEDGAF 177
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 7/150 (4%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C+ V+C ++ IP + L L+ N ++VL+ + + N+
Sbjct: 505 CPEKCRCEGT----IVDCSNQKLVRIPSHLPEYVTDLRLNDNEVSVLEATGIFKK-LPNL 559
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQ 140
+K+ L K++ V + AF G ++ EL L+ N L TV ++ + LK++ L N I
Sbjct: 560 RKINLSNNKIKEVREGAFDGAASVQELMLTGNQLETVHGRVFRGLSGLKTLMLRSNLIGC 619
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+S+ +F +R + + + +I TI AF
Sbjct: 620 VSNDTFAGLSSVRLLSLYDNRITTITPGAF 649
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LDLS N I + ++ F GIT+++ L L + ++D AFR + +++ L L++N +S
Sbjct: 138 LDLSENQIQGIPRKAF--RGITDVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISR 195
Query: 119 --VPSLIYIPYLKSINLAHNPIH 139
V S ++P ++++ L N ++
Sbjct: 196 ILVTSFNHMPKIRTLRLHSNHLY 218
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 31/142 (21%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDT-----------------------QVL 59
CP C+C + V C ++ +P G+ D ++
Sbjct: 725 CPEQCTCM----ETVVRCSNKGLRALPRGMPKDVTELYLEGNHLTAVPRELSALRHLTLI 780
Query: 60 DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
DLS+N+I++L F M +++ L L +L + AF G+ ++ L L N +S+V
Sbjct: 781 DLSNNSISMLTNYTFSNM--SHLSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDISSV 838
Query: 120 P--SLIYIPYLKSINLAHNPIH 139
P S + L + L NP+H
Sbjct: 839 PEGSFNDLTSLSHLALGTNPLH 860
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
L++ I+ ++ + F G + + + +C ++ V R + +D S+ L +P
Sbjct: 470 LANKRISQIKSKKFRCSGSEDYRSRFSSECFMDLVCPEKCRCEGTI--VDCSNQKLVRIP 527
Query: 121 SLIYIP-YLKSINLAHNPIHQISSYS-FQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRR 178
S ++P Y+ + L N + + + F+ P +R I++SN +I + AF G+ ++
Sbjct: 528 S--HLPEYVTDLRLNDNEVSVLEATGIFKKLPNLRKINLSNNKIKEVREGAFDGAASVQE 585
Query: 179 PTITG 183
+TG
Sbjct: 586 LMLTG 590
>sp|O94813|SLIT2_HUMAN Slit homolog 2 protein OS=Homo sapiens GN=SLIT2 PE=1 SV=1
Length = 1529
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 8/163 (4%)
Query: 10 FLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVL 69
+L +L V +CP CSC TV+C ++P I +T+ LDL+ NNI +
Sbjct: 15 LVLAILNKVAPQACPAQCSCSGS----TVDCHGLALRSVPRNIPRNTERLDLNGNNITRI 70
Query: 70 QKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLK 129
K F G+ +++ L L + K+ ++ AF+ + ++ L L+ N L P L+++ K
Sbjct: 71 TKTDF--AGLRHLRVLQLMENKISTIERGAFQDLKELERLRLNRNHLQLFPELLFLGTAK 128
Query: 130 --SINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
++L+ N I I +F+ I+ + + QI I AF
Sbjct: 129 LYRLDLSENQIQAIPRKAFRGAVDIKNLQLDYNQISCIEDGAF 171
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 7/151 (4%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
+CP C C+ TV+C ++ IPE I T L L++N VL+ + +
Sbjct: 505 ACPEKCRCEGT----TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKK-LPQ 559
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIH 139
++K+ K+ +++ AF G + ++E+ L+ N L V ++ + LK++ L N I
Sbjct: 560 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 619
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ + SF +R + + + QI T+ AF
Sbjct: 620 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 650
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS- 117
LDLS N I + ++ F G +I+ L L ++ ++D AFR + +++ L L++N ++
Sbjct: 132 LDLSENQIQAIPRKAF--RGAVDIKNLQLDYNQISCIEDGAFRALRDLEVLTLNNNNITR 189
Query: 118 -TVPSLIYIPYLKSINLAHNPIH 139
+V S ++P L++ L N ++
Sbjct: 190 LSVASFNHMPKLRTFRLHSNNLY 212
Score = 38.5 bits (88), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 31/144 (21%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDT-----------------------Q 57
+ CP C+C V C ++ +P+GI D
Sbjct: 725 SRCPTECTCL----DTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLT 780
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
++DLS+N I+ L + F M T + L L +L + R F G+ ++ L L N +S
Sbjct: 781 LIDLSNNRISTLSNQSFSNM--TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 838
Query: 118 TVPSLIY--IPYLKSINLAHNPIH 139
VP + + L + + NP++
Sbjct: 839 VVPEGAFNDLSALSHLAIGANPLY 862
>sp|Q7L985|LIGO2_HUMAN Leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 2 OS=Homo sapiens GN=LINGO2
PE=1 SV=1
Length = 606
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 88/188 (46%), Gaps = 29/188 (15%)
Query: 7 LSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNI 66
L+V L+ + +++ CP C C A ++V C R IPEGI ++T++LDLS N +
Sbjct: 15 LAVVLIFMGSTI---GCPARCECS--AQNKSVSCHRRRLIAIPEGIPIETKILDLSKNRL 69
Query: 67 NVLQKEIFLQM----------------------GITNIQKLYLRKCKLEFVDDRAFRGVT 104
+ E F+ + N++ L L+ +L+ V F G++
Sbjct: 70 KSVNPEEFISYPLLEEIDLSDNIIANVEPGAFNNLFNLRSLRLKGNRLKLVPLGVFTGLS 129
Query: 105 NMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
N+ +LD+S+N + + ++ + LKS+ + N + IS +F + + + C +
Sbjct: 130 NLTKLDISENKIVILLDYMFQDLHNLKSLEVGDNDLVYISHRAFSGLLSLEQLTLEKCNL 189
Query: 163 HTIYSEAF 170
+ +EA
Sbjct: 190 TAVPTEAL 197
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 105 NMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
N+ L +++ LSTVP L + + YL +NL++NPI I + F ++ + + Q+
Sbjct: 250 NLTSLSVTNTNLSTVPFLAFKHLVYLTHLNLSYNPISTIEAGMFSDLIRLQELHIVGAQL 309
Query: 163 HTIYSEAFYGSDQIR 177
TI +F G +R
Sbjct: 310 RTIEPHSFQGLRFLR 324
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
L+LS N I+ ++ +F + +Q+L++ +L ++ +F+G+ + L++S NLL T
Sbjct: 278 LNLSYNPISTIEAGMFSDL--IRLQELHIVGAQLRTIEPHSFQGLRFLRVLNVSQNLLET 335
Query: 119 VPSLIYIP--YLKSINLAHNPI 138
+ ++ L+ +++ +NP+
Sbjct: 336 LEENVFSSPRALEVLSINNNPL 357
Score = 30.4 bits (67), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPI 138
N+ L + L V AF+ + + L+LS N +ST+ + ++ + L+ +++ +
Sbjct: 250 NLTSLSVTNTNLSTVPFLAFKHLVYLTHLNLSYNPISTIEAGMFSDLIRLQELHIVGAQL 309
Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
I +SFQ +R +++S + T+ F
Sbjct: 310 RTIEPHSFQGLRFLRVLNVSQNLLETLEENVF 341
>sp|Q9BXB1|LGR4_HUMAN Leucine-rich repeat-containing G-protein coupled receptor 4 OS=Homo
sapiens GN=LGR4 PE=2 SV=2
Length = 951
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
C CSC G R V+C + +PEG+ TQ LD+S NNI L ++ F +
Sbjct: 29 CAAPCSCD---GDRRVDCSGKGLTAVPEGLSAFTQALDISMNNITQLPEDAFKNFPF--L 83
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIHQ 140
++L L L F+ +A G+ + L L +N L TVPS + + L+S+ L N I
Sbjct: 84 EELQLAGNDLSFIHPKALSGLKELKVLTLQNNQLKTVPSEAIRGLSALQSLRLDANHITS 143
Query: 141 ISSYSFQSTPGIRYI 155
+ SF+ +R++
Sbjct: 144 VPEDSFEGLVQLRHL 158
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%)
Query: 78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNP 137
G +++ L L K+ + + + + LDLS N + +PS L+ I+L N
Sbjct: 317 GTVHLESLTLTGTKISSIPNNLCQEQKMLRTLDLSYNNIRDLPSFNGCHALEEISLQRNQ 376
Query: 138 IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
I+QI +FQ +R +D+S IH I+S AF
Sbjct: 377 IYQIKEGTFQGLISLRILDLSRNLIHEIHSRAF 409
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 96 DDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIR 153
D +F G ++E+ L N + + + + L+ ++L+ N IH+I S +F + I
Sbjct: 357 DLPSFNGCHALEEISLQRNQIYQIKEGTFQGLISLRILDLSRNLIHEIHSRAFATLGPIT 416
Query: 154 YIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQ 189
+D+S ++ + +E G +Q++ + G +K ++
Sbjct: 417 NLDVSFNELTSFPTEGLNGLNQLK---LVGNFKLKE 449
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 34 GKRTVECIDRNFYTI---PEGIDL--DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLR 88
G +E +D N+ + P+ I + L SN+I+V+ F G ++ ++L
Sbjct: 223 GLDNLETLDLNYNNLGEFPQAIKALPSLKELGFHSNSISVIPDGAF--DGNPLLRTIHLY 280
Query: 89 KCKLEFVDDRAFRGVTNMDELDL-SDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQ 147
L FV + AF ++++ L + +++ P+L +L+S+ L I I + Q
Sbjct: 281 DNPLSFVGNSAFHNLSDLHSLVIRGASMVQQFPNLTGTVHLESLTLTGTKISSIPNNLCQ 340
Query: 148 STPGIRYIDMS 158
+R +D+S
Sbjct: 341 EQKMLRTLDLS 351
>sp|Q2V898|TLR4_BOSTR Toll-like receptor 4 OS=Boselaphus tragocamelus GN=TLR4 PE=2 SV=1
Length = 841
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 38/190 (20%)
Query: 14 LLASVTQASCPLGC--SCKWKAGKRTV-----ECIDRNFYTIPEGIDLDTQVLDLSSNNI 66
L A++ A+ L C + W + V +C++ N Y IP+ I + T++LDLS N +
Sbjct: 7 LAAALIPATAILSCLRTESWDPCVQVVPNISYQCMELNLYKIPDNIPISTKMLDLSFNYL 66
Query: 67 NVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL----------- 115
L F +Q L L +C+++ ++D F+G+ ++ L L+ N
Sbjct: 67 RHLGSHNF--SSFPELQVLDLSRCEIKIIEDDTFQGLNHLSTLILTGNPIQSLAWGAFSG 124
Query: 116 LSTVPSLI---------------YIPYLKSINLAHNPIH--QISSYSFQSTPGIRYIDMS 158
LS++ L+ ++ LK +N+AHN IH ++ Y F + P + ++D+S
Sbjct: 125 LSSLQKLVAVETNLVSLNDFPIGHLKTLKELNVAHNFIHSFKLPEY-FSNLPNLEHLDLS 183
Query: 159 NCQIHTIYSE 168
N +I IY E
Sbjct: 184 NNKIQNIYYE 193
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 74 FLQMGITNIQKLYLRKCKLEFVD--DRAFRGVTNMDELDLSDNLLSTVPS-LIYIPYLKS 130
F + + ++Q L LR+ L F A G TN+ LDLS N + T+ S + + L+
Sbjct: 367 FTEFQLPSLQYLDLRRNHLSFKGCCSHADFGTTNLKHLDLSFNDVITLGSNFMGLEKLEH 426
Query: 131 INLAHNPIHQISSYS-FQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183
++ H+ + QI+++S F S +RY+D+S + ++ F G ++ + G
Sbjct: 427 LDFQHSTLKQINAFSVFLSLRNLRYLDISYTNVRIVFHGIFTGLVSLKTLKMAG 480
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183
K ++L+ N + + S++F S P ++ +D+S C+I I + F G + + +TG
Sbjct: 57 KMLDLSFNYLRHLGSHNFSSFPELQVLDLSRCEIKIIEDDTFQGLNHLSTLILTG 111
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 45 FYTIPEGIDLDTQVLDLSSNNI-NVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
F+ I G+ + + L ++ N + L +IF ++ TN+ L L KC+LE V AF +
Sbjct: 463 FHGIFTGL-VSLKTLKMAGNTFQDNLLPDIFTEL--TNLTVLDLSKCQLEQVAQTAFHSL 519
Query: 104 TNMDELDLSDNLLSTVPSLIYIP--YLKSINLAHNPIHQISSYSFQSTP 150
+++ L++S N L ++ + +Y P L+ ++ + N I Q+ P
Sbjct: 520 SSLQVLNMSHNKLLSLDTFLYEPLHLLRILDCSFNRIMDSKEQDLQNLP 568
>sp|Q96FE5|LIGO1_HUMAN Leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 1 OS=Homo sapiens GN=LINGO1
PE=1 SV=2
Length = 620
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 26/173 (15%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM---- 77
CP C C A R V C + F +PEGI +T++LDL N I L ++ F
Sbjct: 41 GCPPRCECS--AQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLE 98
Query: 78 ------------------GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
+ N++ L LR +L+ + F G++N+ +LD+S+N + +
Sbjct: 99 ELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL 158
Query: 120 PSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
++ + LKS+ + N + IS +F + + + C + +I +EA
Sbjct: 159 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 211
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+S N I +L +F + N++ L + L ++ RAF G+ ++++L L L++
Sbjct: 148 LDISENKIVILLDYMF--QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 205
Query: 119 VP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYG 172
+P +L ++ L + L H I+ I YSF+ ++ +++S+ + T+ YG
Sbjct: 206 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 262
Score = 34.7 bits (78), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 105 NMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
N+ L ++ L+ VP L ++ YL+ +NL++NPI I ++ I + Q+
Sbjct: 264 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 323
Query: 163 HTIYSEAFYGSDQIRRPTITG 183
+ AF G + +R ++G
Sbjct: 324 AVVEPYAFRGLNYLRVLNVSG 344
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPI 138
N+ L + C L V A R + + L+LS N +ST+ L + L+ I L +
Sbjct: 264 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 323
Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
+ Y+F+ +R +++S Q+ T+ F+
Sbjct: 324 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 356
>sp|Q5RDJ4|LIGO1_PONAB Leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 1 OS=Pongo abelii GN=LINGO1
PE=2 SV=1
Length = 614
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 26/173 (15%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM---- 77
CP C C A R V C + F +PEGI +T++LDL N I L ++ F
Sbjct: 35 GCPPRCECS--AQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLE 92
Query: 78 ------------------GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
+ N++ L LR +L+ + F G++N+ +LD+S+N + +
Sbjct: 93 ELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL 152
Query: 120 PSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
++ + LKS+ + N + IS +F + + + C + +I +EA
Sbjct: 153 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 205
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+S N I +L +F + N++ L + L ++ RAF G+ ++++L L L++
Sbjct: 142 LDISENKIVILLDYMF--QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 199
Query: 119 VP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYG 172
+P +L ++ L + L H I+ I YSF+ ++ +++S+ + T+ YG
Sbjct: 200 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 256
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 105 NMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
N+ L ++ L+ VP L ++ YL+ +NL++NPI I ++ I + Q+
Sbjct: 258 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 317
Query: 163 HTIYSEAFYGSDQIRRPTITG 183
+ AF G + +R ++G
Sbjct: 318 AVVEPYAFRGLNYLRVLNVSG 338
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPI 138
N+ L + C L V A R + + L+LS N +ST+ L + L+ I L +
Sbjct: 258 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 317
Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
+ Y+F+ +R +++S Q+ T+ F+
Sbjct: 318 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 350
>sp|Q9D1T0|LIGO1_MOUSE Leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 1 OS=Mus musculus GN=Lingo1
PE=1 SV=1
Length = 614
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 6/162 (3%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
CP C C A R V C + F +PEGI +T++LDL N I L ++ F +
Sbjct: 35 GCPPRCECS--AQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEF--ASFPH 90
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIH 139
+++L L + + V+ AF + N+ L L N L +P ++ + L ++++ N I
Sbjct: 91 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 150
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTI 181
+ Y FQ ++ +++ + + I AF G + + + T+
Sbjct: 151 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 192
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+S N I +L +F + N++ L + L ++ RAF G+ ++++L L L++
Sbjct: 142 LDISENKIVILLDYMF--QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 199
Query: 119 VP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYG 172
+P +L ++ L + L H I+ I YSF+ ++ +++S+ + T+ YG
Sbjct: 200 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 256
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 105 NMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
N+ L ++ L+ VP L ++ YL+ +NL++NPI I ++ I + Q+
Sbjct: 258 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIGTIEGSMLHELLRLQEIQLVGGQL 317
Query: 163 HTIYSEAFYGSDQIRRPTITG 183
+ AF G + +R ++G
Sbjct: 318 AVVEPYAFRGLNYLRVLNVSG 338
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPI 138
N+ L + C L V A R + + L+LS N + T+ L + L+ I L +
Sbjct: 258 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIGTIEGSMLHELLRLQEIQLVGGQL 317
Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
+ Y+F+ +R +++S Q+ T+ AF+
Sbjct: 318 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESAFH 350
>sp|Q5M8M9|LRC52_MOUSE Leucine-rich repeat-containing protein 52 OS=Mus musculus GN=Lrrc52
PE=2 SV=1
Length = 314
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 11/161 (6%)
Query: 15 LASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIF 74
+ V+ + CP C C+ + V CID + P I L+T+ L L++N I L
Sbjct: 18 MGLVSGSKCPNKCVCQ----DQEVACIDLHLTEYPADIPLNTRRLYLNNNKITSLPA--- 70
Query: 75 LQMG-ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSI 131
LQ+G ++++ L + ++ V D F G+ + LDLS N L+++ S + L +
Sbjct: 71 LQLGFLSDLVYLDCQNNRIREVMDYTFIGIFRLIYLDLSSNNLTSISPFSFSVLTNLVRL 130
Query: 132 NLAHNP-IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
N++HNP + + Y F +T +RY+D+ N +H I F+
Sbjct: 131 NISHNPHLLYLDKYVFANTTSLRYLDLRNTGLHIIDHNGFH 171
>sp|Q9N008|LIGO1_MACFA Leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 1 OS=Macaca fascicularis
GN=LINGO1 PE=2 SV=1
Length = 614
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 26/173 (15%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM---- 77
CP C C A R V C + F +PEGI +T++LDL N I L ++ F
Sbjct: 35 GCPPRCECS--AQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLE 92
Query: 78 ------------------GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
+ N++ L LR +L+ + F G++N+ +LD+S+N + +
Sbjct: 93 ELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL 152
Query: 120 PSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
++ + LKS+ + N + IS +F + + + C + +I +EA
Sbjct: 153 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 205
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+S N I +L +F + N++ L + L ++ RAF G+ ++++L L L++
Sbjct: 142 LDISENKIVILLDYMF--QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 199
Query: 119 VP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYG 172
+P +L ++ L + L H I+ I YSF+ ++ +++S+ + T+ YG
Sbjct: 200 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 256
Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 105 NMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
N+ L ++ L+ VP L ++ YL+ +NL++NPI I ++ I + Q+
Sbjct: 258 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 317
Query: 163 HTIYSEAFYGSDQIRRPTITG 183
+ AF G + +R ++G
Sbjct: 318 AMVEPYAFRGLNYLRVLNVSG 338
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPI 138
N+ L + C L V A R + + L+LS N +ST+ L + L+ I L +
Sbjct: 258 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 317
Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
+ Y+F+ +R +++S Q+ T+ F+
Sbjct: 318 AMVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 350
>sp|Q9GL65|TLR4_BOVIN Toll-like receptor 4 OS=Bos taurus GN=TLR4 PE=2 SV=2
Length = 841
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 31/160 (19%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
+ +C++ N Y IP+ I + T++LDLS N + L F +Q L L +C+++ ++
Sbjct: 37 SYQCMELNLYKIPDNIPISTKMLDLSFNYLRHLGSHNF--SSFPELQVLDLSRCEIKIIE 94
Query: 97 DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
D F+G+ ++ L L+ N LS++ L+ ++ LK
Sbjct: 95 DDTFQGLNHLSTLILTGNPIQSLAWGAFSGLSSLQKLVAVETNLVSLNDFPIGHLKNLKE 154
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
+N+AHN IH ++ Y F + P + ++D+SN +I IY E
Sbjct: 155 LNVAHNFIHSFKLPEY-FSNLPNLEHLDLSNNKIQNIYYE 193
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 74 FLQMGITNIQKLYLRKCKLEFVD--DRAFRGVTNMDELDLSDNLLSTVPS-LIYIPYLKS 130
F + + ++Q L L++ L F G TN+ LDLS N + T+ S + + L+
Sbjct: 367 FTEFQLPSLQYLDLKRNHLSFKGCCSHTDFGTTNLKHLDLSFNDVITLGSNFMGLEQLEH 426
Query: 131 INLAHNPIHQISSYS-FQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183
++ H+ + QI+++S F S +RY+D+S I ++ F G ++ + G
Sbjct: 427 LDFQHSTLKQINAFSAFLSLRNLRYLDISYTNIRIVFHGIFTGLVSLQTLKMAG 480
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 45 FYTIPEGIDLDTQVLDLSSNNI-NVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
F+ I G+ + Q L ++ N+ N L +IF ++ TN+ L L KC+LE V AF +
Sbjct: 463 FHGIFTGL-VSLQTLKMAGNSFQNNLLPDIFTEL--TNLTVLDLSKCQLEQVAQTAFHSL 519
Query: 104 TNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIHQISSYSFQSTP 150
+++ L++S N L ++ + +Y P L+ ++ + N I Q+ P
Sbjct: 520 SSLQVLNMSHNKLLSLDTFLYEPLHSLRILDCSFNRIMASKEQELQNLP 568
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183
K ++L+ N + + S++F S P ++ +D+S C+I I + F G + + +TG
Sbjct: 57 KMLDLSFNYLRHLGSHNFSSFPELQVLDLSRCEIKIIEDDTFQGLNHLSTLILTG 111
>sp|P59034|LRRC3_MOUSE Leucine-rich repeat-containing protein 3 OS=Mus musculus GN=Lrrc3
PE=2 SV=1
Length = 257
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 70/163 (42%), Gaps = 12/163 (7%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
ASCP C C AG V C R IP I DT +L L +N I+ + F +
Sbjct: 31 ASCPQACQCPDHAGAVAVHCSSRGLQEIPRDIPADTVLLKLDANRISRVPNGAFQHL--P 88
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVT-NMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIH 139
+++L L +E + AF G+ + LDLS N + +P I L+HNP+H
Sbjct: 89 QLRELDLSHNAIEAIGPAAFSGLAGGLRLLDLSHNRIRRIPKDALGKLSAKIRLSHNPLH 148
Query: 140 -----QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIR 177
Q + + + P +D C HT E F G I+
Sbjct: 149 CECALQEALWELKLDPD--SVDEIAC--HTSAQEQFVGKPLIQ 187
>sp|A6H793|LRRC3_BOVIN Leucine-rich repeat-containing protein 3 OS=Bos taurus GN=LRRC3
PE=2 SV=1
Length = 257
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
ASCP C C AG V C R +P I DT +L L +N I + F +
Sbjct: 31 ASCPQNCQCPDHAGAVAVHCSARGLQEVPRDIPADTVLLKLDANKIARIPNGAFQHL--H 88
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVT-NMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIH 139
+++L L + +E + AF G+ + LDLS N L +P I LAHNP+H
Sbjct: 89 QLRELDLSQNAIETIGPAAFSGLAGGLRLLDLSHNRLRRIPKDALGKLSAKIRLAHNPLH 148
>sp|Q9IB75|PGS1_XENLA Biglycan OS=Xenopus laevis GN=bgn PE=2 SV=1
Length = 368
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 11/153 (7%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP GC C R V+C D +IP+ + DT +LDL +N I ++K+ F G+TN+
Sbjct: 63 CPFGCQCHL----RVVQCSDLGLTSIPKNLPKDTTLLDLQNNKITEIKKDDF--KGLTNL 116
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPY-LKSINLAHNPIHQI 141
L + K+ ++++AF + M +L +S N L +P +P L + + N I ++
Sbjct: 117 YALVIVNNKISKINEKAFEPLQKMQKLYISKNNLEEIPK--NLPKSLVELRIHENKIKKV 174
Query: 142 SSYSFQSTPGIRYIDMSNCQIHT--IYSEAFYG 172
F + I+M + I + AF G
Sbjct: 175 PKGVFSGLKNMNCIEMGGNPLENGGIEAGAFDG 207
Score = 31.2 bits (69), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 48 IPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
IP+G+ L L +N I ++KE Q ++ +L L + +++ + + +
Sbjct: 223 IPKGLPSTLNELHLDNNKIQAIEKEDLSQY--ASLYRLGLGHNNIRMIENGSLSFMPVLR 280
Query: 108 ELDLSDNLLSTV-PSLIYIPYLKSINLAHNPIHQISSYSF 146
EL L +N LS V P L + L+ + L N I Q+ F
Sbjct: 281 ELHLDNNKLSKVPPGLPDMKLLQVVYLHSNNITQVGVNDF 320
>sp|Q68Y56|TLR4_PIG Toll-like receptor 4 OS=Sus scrofa GN=TLR4 PE=2 SV=1
Length = 841
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 31/160 (19%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
+ +C++ NFY IP+ I ++LDLS N ++ L F +Q L L +C+++ +D
Sbjct: 37 SYQCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSF--SSFPELQVLDLSRCEIQTID 94
Query: 97 DRAFRGVTNMDELDLSDN--------LLSTVPSLI------------------YIPYLKS 130
D A++G+ + L L+ N S +PSL ++ L
Sbjct: 95 DDAYQGLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLNE 154
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
+N+AHN IH ++ Y F + P + ++D+S +I IY E
Sbjct: 155 LNVAHNHIHSFKLPEY-FSNLPNLEHLDLSKNKIENIYHE 193
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 128 LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183
+K ++L+ N + + S SF S P ++ +D+S C+I TI +A+ G + + +TG
Sbjct: 56 VKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTG 111
Score = 38.1 bits (87), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 74 FLQMGITNIQKLYLRKCKLEF---VDDRAFRGVTNMDELDLSDNLLSTVPS-LIYIPYLK 129
F ++ + N+Q L L L F F G T + LDLS N + T+ S + + L+
Sbjct: 367 FTEINLPNLQFLDLSGNHLSFKGCCSHNEF-GTTKLKHLDLSFNEIITMKSNFMGLEQLE 425
Query: 130 SINLAHNPIHQISSYS-FQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183
++ H+ + Q + +S F S + Y+D+S IH ++ F G ++ + G
Sbjct: 426 YLDFQHSSLKQANDFSIFLSLRNLHYLDISYTNIHVVFRGIFAGLVSLQTLKMAG 480
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 57 QVLDLSSNNI-NVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
Q L ++ N+ N L ++F +TN+ L L KC+LE V RAF + + L++S N
Sbjct: 474 QTLKMAGNSFQNNLLPDVF--TDLTNLILLDLSKCQLEQVSQRAFHSLPRLQVLNMSHNR 531
Query: 116 LSTVPSLIYIPY--LKSINLAHNPIHQISSYSFQSTP 150
L + +L Y P L+ ++ ++N I Q P
Sbjct: 532 LLFLDTLPYKPLHSLRILDCSYNLIVASKEQELQHLP 568
>sp|Q9Z2H4|LGR4_RAT Leucine-rich repeat-containing G-protein coupled receptor 4
OS=Rattus norvegicus GN=Lgr4 PE=2 SV=1
Length = 951
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 7/135 (5%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
C CSC G R V+C + +PEG+ TQ LD+S NNI L ++ F +
Sbjct: 29 CAAPCSCD---GDRRVDCSGKGLTAVPEGLSAFTQALDISMNNITQLPEDAFKSFPF--L 83
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIHQ 140
++L L L + +A G+ + L L +N L TVPS + + L+S+ L N I
Sbjct: 84 EELQLAGNDLSLIHPKALSGLKELKVLTLQNNQLRTVPSEAIHGLSALQSLRLDANHITS 143
Query: 141 ISSYSFQSTPGIRYI 155
+ SF+ +R++
Sbjct: 144 VPEDSFEGLVQLRHL 158
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%)
Query: 78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNP 137
G +++ L L K+ + D + + LDLS N + +PS L+ I+L N
Sbjct: 317 GTVHLESLTLTGTKISSIPDDLCQNQKMLRTLDLSYNNIRDLPSFNGCRALEEISLQRNQ 376
Query: 138 IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
I I +FQ +R +D+S I I+S AF
Sbjct: 377 ISLIKENTFQGLTSLRILDLSRNLIREIHSGAF 409
>sp|Q8WUA8|TSK_HUMAN Tsukushin OS=Homo sapiens GN=TSKU PE=2 SV=3
Length = 353
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 10/167 (5%)
Query: 9 VFLLTLLASVTQASCPLGCSCKWKA-------GKRTVECIDRNFYTIPEGIDLDTQVLDL 61
+ LL + + T C GC C+ + V+C + +P I LDT LDL
Sbjct: 6 LLLLAVSGAQTTRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIMPVPIPLDTAHLDL 65
Query: 62 SSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS 121
SSN + ++ + + G T + L L L + AF + ++ LDLS N L+ +P+
Sbjct: 66 SSNRLEMVNESVLAGPGYTTLAGLDLSHNLLTSISPTAFSRLRYLESLDLSHNGLTALPA 125
Query: 122 LIYIPY-LKSINLAHNPIHQISSYSFQSTPGIR--YIDMSNCQIHTI 165
+ L +NL+HN + ++S +F + R ++D+S+ IH +
Sbjct: 126 ESFTSSPLSDVNLSHNQLREVSVSAFTTHSQGRALHVDLSHNLIHRL 172
Score = 33.9 bits (76), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 26/118 (22%)
Query: 45 FYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMG-ITNIQKLYLRKC------------- 90
+ +P DL + L L N + V+ F +G +T++ L++
Sbjct: 196 LHAVPNLRDLPLRYLSLDGNPLAVIGPGAFAGLGGLTHLSLASLQRLPELAPSGFRELPG 255
Query: 91 ----------KLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHN 136
KL + F G++++ ELDLS L +P L+++P L+S+++ +
Sbjct: 256 LQVLDLSGNPKLNWAGAEVFSGLSSLQELDLSGTNLVPLPEALLLHLPALQSVSVGQD 313
>sp|Q3ZBN5|ASPN_BOVIN Asporin OS=Bos taurus GN=ASPN PE=2 SV=1
Length = 370
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 9/139 (6%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
++CP GC C R V C D ++P I DT+++DL +N I +++ F G+T
Sbjct: 63 STCPFGCQCY----SRVVHCSDLGLSSVPSNIPFDTRMVDLQNNKIKEIKENDF--KGLT 116
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPY-LKSINLAHNPIH 139
++ L L KL + +AF + L LS N LS +P + +P L + + N +
Sbjct: 117 SLYALILNNNKLTKIHPKAFLTTKKLRRLYLSHNQLSEIP--LNLPKSLAELRIHDNKVK 174
Query: 140 QISSYSFQSTPGIRYIDMS 158
+I +F+ + ++MS
Sbjct: 175 KIQKATFKGMNALHVLEMS 193
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 112 SDNLLSTVPSLIYIPY-LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
SD LS+VPS IP+ + ++L +N I +I F+ + + ++N ++ I+ +AF
Sbjct: 79 SDLGLSSVPS--NIPFDTRMVDLQNNKIKEIKENDFKGLTSLYALILNNNKLTKIHPKAF 136
Query: 171 YGSDQIRRPTITGQWKPRQNEDSDAQLAKGRAHD 204
+ ++RR ++ + LA+ R HD
Sbjct: 137 LTTKKLRRLYLSHNQLSEIPLNLPKSLAELRIHD 170
>sp|Q80XG9|LRRT4_MOUSE Leucine-rich repeat transmembrane neuronal protein 4 OS=Mus
musculus GN=Lrrtm4 PE=1 SV=2
Length = 590
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 72/168 (42%), Gaps = 28/168 (16%)
Query: 5 FILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSN 64
+L LL ++ + Q +CP C C K V C F IPE I +Q L L N
Sbjct: 16 LVLFPTLLLVMLTGAQRACPKNCRCDGK----IVYCESHAFADIPENISGGSQGLSLRFN 71
Query: 65 NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY 124
+I L+ F G+ + LYL + VD+ AF+G+ + EL LS N
Sbjct: 72 SIQKLKSNQF--AGLNQLIWLYLDHNYISSVDEDAFQGIRRLKELILSSN---------- 119
Query: 125 IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
I HN +F P +R +D+S ++ T+ SE F G
Sbjct: 120 -----KITYLHNK-------TFHPVPNLRNLDLSYNKLQTLQSEQFKG 155
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 42 DRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101
++ F+ +P + + LDLS N + LQ E F G+ + L+LR L+ V R F+
Sbjct: 126 NKTFHPVP-----NLRNLDLSYNKLQTLQSEQF--KGLRKLIILHLRSNSLKTVPIRVFQ 178
Query: 102 GVTNMDELDLSDNLLSTV 119
N+D LDL N L ++
Sbjct: 179 DCRNLDFLDLGYNRLRSL 196
>sp|Q6NUI6|CHADL_HUMAN Chondroadherin-like protein OS=Homo sapiens GN=CHADL PE=2 SV=2
Length = 762
Score = 63.2 bits (152), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 30/185 (16%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C +R V C +N +P+ I TQ LDL N + V+ F G+ ++
Sbjct: 33 CPQACICD--NSRRHVACRYQNLTEVPDAIPELTQRLDLQGNLLKVIPAAAF--QGVPHL 88
Query: 83 QKLYLRKCKLEFVDDRAFR------------------------GVTNMDELDLSDNLLST 118
L LR C++E V + AFR G+ ++ L+L N L
Sbjct: 89 THLDLRHCEVELVAEGAFRGLGRLLLLNLASNHLRELPQEALDGLGSLRRLELEGNALEE 148
Query: 119 VPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQI 176
+ + + L ++NLAHN + + + +FQ +R++ +S+ + + EA G +
Sbjct: 149 LRPGTFGALGALATLNLAHNALVYLPAMAFQGLLRVRWLRLSHNALSVLAPEALAGLPAL 208
Query: 177 RRPTI 181
RR ++
Sbjct: 209 RRLSL 213
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
A CP C C ++ R C +P G DTQ+LDL N+ + + F G+
Sbjct: 394 APCPRACVCVPES--RHSSCEGCGLQAVPRGFPSDTQLLDLRRNHFPSVPRAAF--PGLG 449
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS--TVPSLIYIPYLKSINLAHNPI 138
++ L+L+ C + ++ A G+ + L LSDN L+ + +L P L + L N
Sbjct: 450 HLVSLHLQHCGIAELEAGALAGLGRLIYLYLSDNQLAGLSAAALEGAPRLGYLYLERNRF 509
Query: 139 HQISSYSFQSTPGI 152
Q+ + ++ P +
Sbjct: 510 LQVPGAALRALPSL 523
Score = 40.0 bits (92), Expect = 0.010, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV-TNMDELDLSDNLLS 117
L LS N + L+ F +G ++Q L+L LE + AF G+ + L L N L
Sbjct: 598 LQLSGNPLRALRDGAFQPVG-RSLQHLFLNSSGLEQICPGAFSGLGPGLQSLHLQKNQLR 656
Query: 118 TVPSLIYIPYLKSINLAHNPIH 139
+P+L + L+ I+L+ NP H
Sbjct: 657 ALPALPSLSQLELIDLSSNPFH 678
Score = 31.6 bits (70), Expect = 3.7, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 109 LDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
LDL NLL +P+ + +P+L ++L H + ++ +F+ + +++++ + +
Sbjct: 67 LDLQGNLLKVIPAAAFQGVPHLTHLDLRHCEVELVAEGAFRGLGRLLLLNLASNHLRELP 126
Query: 167 SEAFYGSDQIRRPTITG 183
EA G +RR + G
Sbjct: 127 QEALDGLGSLRRLELEG 143
>sp|Q9BXN1|ASPN_HUMAN Asporin OS=Homo sapiens GN=ASPN PE=1 SV=2
Length = 380
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 9/137 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP GC C R V C D ++P I DT++LDL +N I +++ F G+T++
Sbjct: 75 CPFGCQCY----SRVVHCSDLGLTSVPTNIPFDTRMLDLQNNKIKEIKENDF--KGLTSL 128
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPY-LKSINLAHNPIHQI 141
L L KL + +AF + L LS N LS +P + +P L + + N + +I
Sbjct: 129 YGLILNNNKLTKIHPKAFLTTKKLRRLYLSHNQLSEIP--LNLPKSLAELRIHENKVKKI 186
Query: 142 SSYSFQSTPGIRYIDMS 158
+F+ + ++MS
Sbjct: 187 QKDTFKGMNALHVLEMS 203
Score = 30.4 bits (67), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 56/142 (39%), Gaps = 22/142 (15%)
Query: 48 IPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT--- 104
IP + L + N + +QK+ F M ++ ++ ++ AF GVT
Sbjct: 165 IPLNLPKSLAELRIHENKVKKIQKDTFKGMNALHVLEMSANPLDNNGIEPGAFEGVTVFH 224
Query: 105 -----------------NMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIHQISSYS 145
+ EL L N +STV + Y L+ + L +N I I + S
Sbjct: 225 IRIAEAKLTSVPKGLPPTLLELHLDYNKISTVELEDFKRYKELQRLGLGNNKITDIENGS 284
Query: 146 FQSTPGIRYIDMSNCQIHTIYS 167
+ P +R I + N ++ I S
Sbjct: 285 LANIPRVREIHLENNKLKKIPS 306
>sp|Q9WVC1|SLIT2_RAT Slit homolog 2 protein (Fragment) OS=Rattus norvegicus GN=Slit2
PE=1 SV=3
Length = 766
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 8/155 (5%)
Query: 18 VTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM 77
V +CP CSC TV+C +P I +T+ LDL+ NNI + K F
Sbjct: 23 VAPHACPAQCSCSGS----TVDCHGLALRIVPRNIPRNTERLDLNGNNITRITKTDF--A 76
Query: 78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLK--SINLAH 135
G+ +++ L L + K+ ++ AF + ++ L L+ N L P L+++ K ++L+
Sbjct: 77 GLRHLRILQLMENKISTIERGAFHDLKELERLRLNRNNLQLFPELLFLGTAKLYRLDLSE 136
Query: 136 NPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
N I I +F+ I+ + + QI I AF
Sbjct: 137 NQIQAIPRKAFRGAVDIKNLQLDYNQISCIEDGAF 171
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 7/151 (4%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
+CP C C+ TV+C ++ IP+ I T L L++N VL+ + +
Sbjct: 501 ACPEKCRCEGT----TVDCSNQKLNKIPDHIPQYTAELRLNNNEFTVLEATGIFKK-LPQ 555
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIH 139
++K+ L K+ +++ AF G + ++E+ L+ N L V ++ + LK++ L N I
Sbjct: 556 LRKINLSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIS 615
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ + SF +R + + + QI T+ AF
Sbjct: 616 CVGNDSFTGLGSVRLLSLYDNQITTVAPGAF 646
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 7/101 (6%)
Query: 44 NFYTIPEGIDLDTQVL---DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF 100
N PE + L T L DLS N I + ++ F G +I+ L L ++ ++D AF
Sbjct: 114 NLQLFPELLFLGTAKLYRLDLSENQIQAIPRKAF--RGAVDIKNLQLDYNQISCIEDGAF 171
Query: 101 RGVTNMDELDLSDNLLS--TVPSLIYIPYLKSINLAHNPIH 139
R + +++ L L++N ++ +V S ++P L++ L N ++
Sbjct: 172 RALRDLEVLTLNNNNITRLSVASFNHMPKLRTFRLHSNNLY 212
>sp|O75093|SLIT1_HUMAN Slit homolog 1 protein OS=Homo sapiens GN=SLIT1 PE=2 SV=4
Length = 1534
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 7/150 (4%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C+ VEC IPE I T L L++N I++L+ + +T++
Sbjct: 513 CPHKCRCE----ANVVECSSLKLTKIPERIPQSTAELRLNNNEISILEATGMFKK-LTHL 567
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQ 140
+K+ L K+ ++D AF G ++ EL L+ N L ++ S ++ + L+++ L +N I
Sbjct: 568 KKINLSNNKVSEIEDGAFEGAASVSELHLTANQLESIRSGMFRGLDGLRTLMLRNNRISC 627
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
I + SF +R + + + QI T+ AF
Sbjct: 628 IHNDSFTGLRNVRLLSLYDNQITTVSPGAF 657
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 8/152 (5%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
++CP C+C TV+C IP+ I +T+ L+L+ NNI + K F G+
Sbjct: 32 SACPALCTCTGT----TVDCHGTGLQAIPKNIPRNTERLELNGNNITRIHKNDF--AGLK 85
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYI--PYLKSINLAHNPI 138
++ L L + ++ V+ AF + ++ L L+ N L +P L++ L ++L+ N I
Sbjct: 86 QLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQLHMLPELLFQNNQALSRLDLSENAI 145
Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
I +F+ ++ + + QI I AF
Sbjct: 146 QAIPRKAFRGATDLKNLQLDKNQISCIEEGAF 177
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 59/102 (57%), Gaps = 8/102 (7%)
Query: 41 IDRN-FYTIPEGIDLDTQVL---DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
++RN + +PE + + Q L DLS N I + ++ F G T+++ L L K ++ ++
Sbjct: 116 LNRNQLHMLPELLFQNNQALSRLDLSENAIQAIPRKAF--RGATDLKNLQLDKNQISCIE 173
Query: 97 DRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHN 136
+ AFR + ++ L L++N ++T+P S ++P L++ L N
Sbjct: 174 EGAFRALRGLEVLTLNNNNITTIPVSSFNHMPKLRTFRLHSN 215
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 108 ELDLSDNLLSTVPS---LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT 164
EL L++N +S + + + +LK INL++N + +I +F+ + + ++ Q+ +
Sbjct: 544 ELRLNNNEISILEATGMFKKLTHLKKINLSNNKVSEIEDGAFEGAASVSELHLTANQLES 603
Query: 165 IYSEAFYGSDQIR 177
I S F G D +R
Sbjct: 604 IRSGMFRGLDGLR 616
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 31/149 (20%)
Query: 16 ASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDT------------------- 56
+ + CP C+C V C +++ +P+GI +
Sbjct: 727 GCLPRPQCPQECACL----DTVVRCSNKHLRALPKGIPKNVTELYLDGNQFTLVPGQLST 782
Query: 57 ----QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
Q++DLS+N I+ L F M + + L L L+ + AF+G+ ++ L L
Sbjct: 783 FKYLQLVDLSNNKISSLSNSSFTNM--SQLTTLILSYNALQCIPPLAFQGLRSLRLLSLH 840
Query: 113 DNLLSTVPSLIY--IPYLKSINLAHNPIH 139
N +ST+ I+ + L + + NP++
Sbjct: 841 GNDISTLQEGIFADVTSLSHLAIGANPLY 869
>sp|P24014|SLIT_DROME Protein slit OS=Drosophila melanogaster GN=sli PE=1 SV=2
Length = 1504
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 79/160 (49%), Gaps = 8/160 (5%)
Query: 15 LASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIF 74
+ +T+A CP CSC V+C R ++P I D + L+L NN+ V+ + F
Sbjct: 65 VGVITEARCPRVCSCTG----LNVDCSHRGLTSVPRKISADVERLELQGNNLTVIYETDF 120
Query: 75 LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSIN 132
++ T ++ L L ++ ++ +F+ + +++ L L++N L +P + L ++
Sbjct: 121 QRL--TKLRMLQLTDNQIHTIERNSFQDLVSLERLRLNNNRLKAIPENFVTSSASLLRLD 178
Query: 133 LAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
+++N I + F+ +R + + N QI + AF G
Sbjct: 179 ISNNVITTVGRRVFKGAQSLRSLQLDNNQITCLDEHAFKG 218
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 11/152 (7%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
+ CP C C+ TV+C R IP I L T L L+ N + + + +
Sbjct: 541 SDCPAMCHCEGT----TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGR-LP 595
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPI 138
++ KL L++ +L ++ AF G +++ EL L +N + + + +++ LK++NL N I
Sbjct: 596 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 655
Query: 139 HQISSYSFQSTPGIRYIDMS----NCQIHTIY 166
+ SF+ + ++++ NC H +
Sbjct: 656 SCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW 687
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 53/143 (37%), Gaps = 32/143 (22%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQV------------------------ 58
CP C+C V C IP GI +T
Sbjct: 739 CPPSCTCTGT----VVRCSRNQLKEIPRGIPAETSELYLESNEIEQIHYERIRHLRSLTR 794
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LDLS+N I +L F + T + L + KL+ + A G+ N+ L L N +S
Sbjct: 795 LDLSNNQITILSNYTFANL--TKLSTLIISYNKLQCLQRHALSGLNNLRVLSLHGNRISM 852
Query: 119 VP--SLIYIPYLKSINLAHNPIH 139
+P S + L I L NP++
Sbjct: 853 LPEGSFEDLKSLTHIALGSNPLY 875
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 19 TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMG 78
+ SCP C C V+C +++ ++P + DT L L N I L + F
Sbjct: 315 AENSCPHPCRC----ADGIVDCREKSLTSVPVTLPDDTTELRLEQNFITELPPKSF--SS 368
Query: 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY 124
++++ L + + A G+ + L L N + +PS ++
Sbjct: 369 FRRLRRIDLSNNNISRIAHDALSGLKQLTTLVLYGNKIKDLPSGVF 414
>sp|Q149C3|LIGO4_MOUSE Leucine-rich repeat and immunoglobulin-like domain containing-NOGO
receptor-interacting protein 4 OS=Mus musculus GN=Lingo4
PE=2 SV=2
Length = 593
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 6/154 (3%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
+SCP C C + R V C R TIP G+ LDT++LDLS N + LQ+ + ++G
Sbjct: 29 SSCPTVCDCTSQ--TRAVFCAHRRLDTIPGGLPLDTELLDLSGNRLWGLQRGMLSRLG-- 84
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPI 138
+Q+L L +L ++ AF G+ ++ L L N L V I+ + L ++L N I
Sbjct: 85 QLQELDLSYNQLSTLEPGAFHGLQSLLTLRLQGNRLRIVGPGIFSGLTALTLLDLRLNQI 144
Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
+F ++ +++ + + + AF G
Sbjct: 145 VLFLDGAFSELGSLQQLEVGDNHLVFVAPGAFAG 178
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPI 138
N+ L + +C L V +A ++ + LDLS N +S +P+ P L+ + L+ +
Sbjct: 253 NLSSLAITRCNLSSVPFQALHHLSFLRILDLSQNPISAIPARRLSPLVRLQELRLSGACL 312
Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQI 176
I++++F +D+++ + T+ AF D++
Sbjct: 313 TSIAAHAFHGLTAFHLLDVADNALQTLEETAFPSPDKL 350
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
+LDL N I + F ++G ++Q+L + L FV AF G+ + + L LS
Sbjct: 136 LLDLRLNQIVLFLDGAFSELG--SLQQLEVGDNHLVFVAPGAFAGLAKLSTITLERCNLS 193
Query: 118 TVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDM 157
TVP +L +P L ++ L I ++ + + + ++ +++
Sbjct: 194 TVPGLALAQLPALVALRLRELDIERLPAGALRGLGQLKELEI 235
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
++LDLS N I+ + + +Q+L L L + AF G+T LD++DN L
Sbjct: 279 RILDLSQNPISAIPARRLSPL--VRLQELRLSGACLTSIAAHAFHGLTAFHLLDVADNAL 336
Query: 117 STVPSLIYIP--YLKSINLAHNPI 138
T+ + L ++ L+ NP+
Sbjct: 337 QTLEETAFPSPDKLVTLRLSGNPL 360
>sp|Q8CBR6|TSK_MOUSE Tsukushin OS=Mus musculus GN=Tsku PE=2 SV=2
Length = 354
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 12/173 (6%)
Query: 19 TQASCPLGCSCKWKA-------GKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQK 71
T C GC C+ + V+C + +P I LDT LDLSSN + + +
Sbjct: 17 TTRPCFPGCQCEEETFGLFDSFSLIRVDCSSLGPHIVPVPIPLDTAHLDLSSNRLETVNE 76
Query: 72 EIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPY-LKS 130
+ G T + L L L + AF + ++ LDLS N L+ +P+ I+ L
Sbjct: 77 SVLAGPGYTTLAGLDLSYNLLTSIMPSAFSRLRYLESLDLSHNGLAALPAEIFTSSPLSD 136
Query: 131 INLAHNPIHQISSYSFQSTPGIR--YIDMSNCQIHTIYSEAFYGSDQIRRPTI 181
INL+HN + ++S +F + R ++D+S+ IH + S + PTI
Sbjct: 137 INLSHNRLREVSISAFTTHSQGRALHVDLSHNLIHRLLPHPARAS--LPAPTI 187
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 26/118 (22%)
Query: 45 FYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM-GITNIQKLYLRKC------------- 90
F +P+ DL + L L N + + + F+ + G+T++ L+
Sbjct: 197 FRAVPDLRDLPLRYLSLDGNPLATINPDAFMGLAGLTHLSLASLQGILHLPPHGFRELPG 256
Query: 91 ----------KLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHN 136
KL++ F G+ + ELDLS + L +P ++ ++P L+S+++ +
Sbjct: 257 LQVLDLSGNPKLKWAGAEVFSGLGLLQELDLSGSSLVPLPEMLLHHLPALQSVSVGQD 314
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,738,594
Number of Sequences: 539616
Number of extensions: 2760282
Number of successful extensions: 8720
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 326
Number of HSP's that attempted gapping in prelim test: 6668
Number of HSP's gapped (non-prelim): 1736
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)