Query psy14766
Match_columns 207
No_of_seqs 140 out of 1695
Neff 10.1
Searched_HMMs 46136
Date Fri Aug 16 20:04:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14766.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14766hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4237|consensus 99.9 1.5E-24 3.2E-29 168.6 0.5 166 19-187 33-201 (498)
2 KOG4194|consensus 99.8 2.5E-21 5.3E-26 157.4 8.8 177 21-205 44-228 (873)
3 KOG4194|consensus 99.8 6.6E-20 1.4E-24 149.2 2.7 168 36-205 152-348 (873)
4 PLN00113 leucine-rich repeat r 99.7 1.4E-16 3E-21 143.0 11.5 166 35-202 95-288 (968)
5 KOG0617|consensus 99.7 5.6E-19 1.2E-23 124.0 -3.7 152 35-192 35-191 (264)
6 PLN00113 leucine-rich repeat r 99.6 7E-16 1.5E-20 138.5 10.3 145 54-200 164-310 (968)
7 KOG4237|consensus 99.6 4E-17 8.6E-22 127.6 -3.1 81 35-117 69-153 (498)
8 KOG0472|consensus 99.6 3.5E-16 7.6E-21 122.7 -1.0 149 35-187 364-541 (565)
9 KOG0444|consensus 99.5 3.8E-15 8.3E-20 123.0 -0.5 150 34-188 104-282 (1255)
10 PF14580 LRR_9: Leucine-rich r 99.5 2.6E-14 5.7E-19 102.8 3.3 141 41-188 5-152 (175)
11 PF14580 LRR_9: Leucine-rich r 99.5 1.9E-14 4.1E-19 103.5 2.5 126 78-205 17-147 (175)
12 KOG0617|consensus 99.4 4E-15 8.6E-20 104.8 -2.9 154 46-205 24-180 (264)
13 PRK15387 E3 ubiquitin-protein 99.4 1.8E-12 4E-17 112.1 11.2 104 28-142 197-318 (788)
14 PRK15370 E3 ubiquitin-protein 99.4 1.2E-12 2.6E-17 113.4 10.0 122 34-167 179-300 (754)
15 KOG0444|consensus 99.4 4.1E-14 8.8E-19 117.1 0.7 147 39-189 84-260 (1255)
16 KOG0618|consensus 99.4 8.7E-15 1.9E-19 124.9 -4.3 158 24-185 280-487 (1081)
17 PRK15387 E3 ubiquitin-protein 99.4 1.2E-12 2.6E-17 113.3 7.5 108 81-196 343-467 (788)
18 KOG1259|consensus 99.4 7.6E-14 1.6E-18 106.3 -0.0 136 55-197 285-422 (490)
19 PRK15370 E3 ubiquitin-protein 99.3 2.3E-12 5.1E-17 111.6 8.0 148 35-191 201-384 (754)
20 KOG0472|consensus 99.3 3E-14 6.6E-19 112.0 -5.0 151 41-197 145-297 (565)
21 PF13855 LRR_8: Leucine rich r 99.3 5.1E-12 1.1E-16 75.5 5.3 61 126-186 1-61 (61)
22 KOG0618|consensus 99.2 1.5E-12 3.2E-17 111.5 -0.6 147 35-184 361-510 (1081)
23 PF13855 LRR_8: Leucine rich r 99.2 4.2E-11 9.1E-16 71.5 4.6 60 55-116 2-61 (61)
24 KOG0532|consensus 99.1 2E-11 4.4E-16 100.0 -0.4 141 55-206 122-263 (722)
25 PLN03150 hypothetical protein; 99.0 8.8E-10 1.9E-14 94.7 8.3 103 56-160 420-525 (623)
26 COG4886 Leucine-rich repeat (L 99.0 7.4E-10 1.6E-14 90.4 4.8 152 35-192 118-295 (394)
27 PLN03210 Resistant to P. syrin 99.0 9E-09 1.9E-13 94.3 12.2 118 80-203 778-898 (1153)
28 PLN03210 Resistant to P. syrin 98.9 1.4E-08 3.1E-13 93.0 12.6 50 37-89 593-643 (1153)
29 COG4886 Leucine-rich repeat (L 98.9 9.2E-10 2E-14 89.9 4.3 129 35-168 142-295 (394)
30 KOG1259|consensus 98.9 9.9E-11 2.2E-15 89.6 -1.3 128 35-167 286-416 (490)
31 cd00116 LRR_RI Leucine-rich re 98.9 4.4E-10 9.6E-15 88.9 2.1 108 80-187 137-263 (319)
32 KOG0532|consensus 98.9 3.1E-11 6.6E-16 98.9 -5.4 162 36-204 53-240 (722)
33 cd00116 LRR_RI Leucine-rich re 98.9 4.8E-10 1E-14 88.7 1.3 14 174-187 278-291 (319)
34 PLN03150 hypothetical protein; 98.8 8.9E-09 1.9E-13 88.6 7.7 109 81-189 419-530 (623)
35 KOG1859|consensus 98.8 7.1E-11 1.5E-15 99.4 -7.3 128 55-189 165-294 (1096)
36 KOG3207|consensus 98.7 1.1E-08 2.4E-13 81.7 2.3 110 78-187 220-339 (505)
37 PF13306 LRR_5: Leucine rich r 98.6 3.5E-07 7.5E-12 62.7 9.2 122 68-197 2-125 (129)
38 KOG0531|consensus 98.5 1.7E-08 3.8E-13 83.0 -0.0 108 78-189 93-201 (414)
39 KOG4579|consensus 98.5 1.1E-09 2.4E-14 74.6 -5.8 88 80-168 53-141 (177)
40 KOG4579|consensus 98.5 5.5E-09 1.2E-13 71.2 -2.7 133 28-164 22-160 (177)
41 KOG1644|consensus 98.5 1.3E-07 2.9E-12 68.6 3.9 123 56-183 21-149 (233)
42 KOG3207|consensus 98.5 2E-08 4.3E-13 80.3 -0.6 109 80-188 197-315 (505)
43 PF13306 LRR_5: Leucine rich r 98.5 6E-07 1.3E-11 61.5 6.8 115 55-177 13-129 (129)
44 KOG1859|consensus 98.4 4.7E-09 1E-13 88.8 -5.8 108 79-190 163-270 (1096)
45 KOG1644|consensus 98.4 4.5E-07 9.7E-12 65.9 5.0 123 36-162 22-152 (233)
46 KOG4658|consensus 98.4 4.2E-07 9E-12 80.7 5.9 136 44-184 512-652 (889)
47 PF12799 LRR_4: Leucine Rich r 98.4 4.8E-07 1E-11 49.9 3.5 38 127-165 2-39 (44)
48 KOG0531|consensus 98.3 8.6E-08 1.9E-12 78.9 -0.1 106 54-165 95-201 (414)
49 KOG1909|consensus 98.3 2.1E-07 4.6E-12 72.5 1.1 134 55-188 93-255 (382)
50 PF12799 LRR_4: Leucine Rich r 98.3 6.1E-07 1.3E-11 49.5 2.6 38 150-188 1-38 (44)
51 KOG4658|consensus 98.1 3.7E-06 8E-11 74.8 5.2 143 36-181 526-675 (889)
52 KOG1909|consensus 98.1 1.4E-06 3E-11 68.1 1.5 134 54-187 157-311 (382)
53 PF01462 LRRNT: Leucine rich r 98.0 9.1E-06 2E-10 40.0 2.7 28 22-53 1-28 (28)
54 smart00013 LRRNT Leucine rich 97.9 1.6E-05 3.4E-10 40.9 3.3 31 22-56 1-31 (33)
55 PRK15386 type III secretion pr 97.9 0.00014 3E-09 59.2 9.9 131 35-184 54-187 (426)
56 KOG3665|consensus 97.7 2.5E-05 5.5E-10 67.9 3.7 132 55-188 123-264 (699)
57 COG5238 RNA1 Ran GTPase-activa 97.7 3.5E-05 7.5E-10 58.9 2.8 134 54-189 92-257 (388)
58 KOG2739|consensus 97.6 2.1E-05 4.5E-10 59.4 0.9 100 79-180 42-149 (260)
59 KOG2739|consensus 97.5 8.3E-05 1.8E-09 56.2 2.7 88 102-189 41-131 (260)
60 KOG2982|consensus 97.2 0.00014 3E-09 56.3 1.4 36 105-140 72-111 (418)
61 KOG2982|consensus 97.1 0.00019 4.1E-09 55.6 1.0 133 54-188 97-263 (418)
62 KOG3665|consensus 97.1 0.0005 1.1E-08 60.1 3.7 107 54-164 148-264 (699)
63 KOG2120|consensus 97.1 6.5E-06 1.4E-10 63.5 -6.9 83 55-139 186-273 (419)
64 KOG2123|consensus 97.0 3E-05 6.6E-10 59.3 -4.0 100 29-132 15-123 (388)
65 PF00560 LRR_1: Leucine Rich R 97.0 0.00071 1.5E-08 31.2 2.1 21 151-172 1-21 (22)
66 KOG2123|consensus 96.9 1.8E-05 3.8E-10 60.6 -5.9 83 79-163 18-101 (388)
67 PRK15386 type III secretion pr 96.8 0.011 2.4E-07 48.4 8.5 114 54-187 52-169 (426)
68 COG5238 RNA1 Ran GTPase-activa 96.3 0.0056 1.2E-07 47.1 3.9 117 78-194 90-234 (388)
69 PF00560 LRR_1: Leucine Rich R 96.2 0.0034 7.4E-08 28.8 1.6 17 81-97 1-17 (22)
70 smart00370 LRR Leucine-rich re 96.1 0.0039 8.5E-08 29.8 1.5 22 150-171 2-23 (26)
71 smart00369 LRR_TYP Leucine-ric 96.1 0.0039 8.5E-08 29.8 1.5 22 150-171 2-23 (26)
72 PF13504 LRR_7: Leucine rich r 95.9 0.0053 1.2E-07 26.3 1.3 15 151-165 2-16 (17)
73 smart00369 LRR_TYP Leucine-ric 95.3 0.016 3.5E-07 27.6 1.9 16 106-121 4-19 (26)
74 smart00370 LRR Leucine-rich re 95.3 0.016 3.5E-07 27.6 1.9 16 106-121 4-19 (26)
75 KOG2120|consensus 95.1 0.0014 2.9E-08 51.0 -3.5 60 55-116 211-272 (419)
76 KOG0473|consensus 94.1 0.00095 2.1E-08 50.1 -6.2 80 105-186 43-123 (326)
77 KOG0473|consensus 90.2 0.0064 1.4E-07 45.8 -5.8 84 78-163 40-124 (326)
78 smart00365 LRR_SD22 Leucine-ri 89.9 0.31 6.8E-06 23.3 1.8 17 150-166 2-18 (26)
79 KOG3864|consensus 89.6 0.088 1.9E-06 38.8 -0.3 34 150-183 151-185 (221)
80 PF13516 LRR_6: Leucine Rich r 89.4 0.21 4.6E-06 23.1 1.0 15 150-164 2-16 (24)
81 smart00364 LRR_BAC Leucine-ric 88.3 0.29 6.2E-06 23.4 1.0 18 150-167 2-19 (26)
82 KOG3864|consensus 84.6 0.11 2.4E-06 38.3 -2.2 76 81-158 102-184 (221)
83 KOG3763|consensus 83.0 0.66 1.4E-05 39.4 1.4 13 176-188 272-284 (585)
84 KOG1947|consensus 80.6 0.45 9.7E-06 39.7 -0.4 108 79-186 187-307 (482)
85 smart00368 LRR_RI Leucine rich 79.5 1.4 3.1E-05 21.2 1.4 13 151-163 3-15 (28)
86 KOG3763|consensus 78.1 1.2 2.7E-05 37.8 1.4 62 102-164 216-284 (585)
87 TIGR00864 PCC polycystin catio 62.5 4.6 9.9E-05 41.1 1.7 31 110-140 1-33 (2740)
88 PF05725 FNIP: FNIP Repeat; I 62.3 15 0.00033 19.7 3.1 33 52-88 10-42 (44)
89 TIGR00864 PCC polycystin catio 59.2 6.2 0.00013 40.2 2.0 31 60-92 1-31 (2740)
90 PF05624 LSR: Lipolysis stimul 59.0 21 0.00046 19.5 3.1 23 8-30 12-34 (49)
91 smart00367 LRR_CC Leucine-rich 51.7 11 0.00025 17.4 1.3 11 150-160 2-12 (26)
92 KOG1947|consensus 43.3 15 0.00032 30.6 1.6 11 126-136 295-305 (482)
93 PF07771 TSGP1: Tick salivary 32.6 26 0.00056 23.7 1.2 25 1-25 1-26 (120)
94 KOG4308|consensus 30.5 2.3 5E-05 36.0 -5.1 38 150-187 262-303 (478)
95 KOG4341|consensus 30.5 32 0.0007 28.7 1.6 36 149-184 400-436 (483)
No 1
>KOG4237|consensus
Probab=99.89 E-value=1.5e-24 Score=168.61 Aligned_cols=166 Identities=20% Similarity=0.414 Sum_probs=154.9
Q ss_pred hccCCCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCch
Q psy14766 19 TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR 98 (207)
Q Consensus 19 ~~~~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 98 (207)
.+.+||.+|.|...+ +..|+|++++++++|..+|.+++.+.+..|.|+.+|+.+|. .+.+|+.|+++.|.|+.|.|.
T Consensus 33 ~~~~CP~pC~Cs~~~-g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~--~l~~LRrLdLS~N~Is~I~p~ 109 (498)
T KOG4237|consen 33 SASACPAPCTCSDVE-GGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFK--TLHRLRRLDLSKNNISFIAPD 109 (498)
T ss_pred ccccCCCCcccCCCC-CceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhcc--chhhhceecccccchhhcChH
Confidence 357999999999766 78999999999999999999999999999999999999999 899999999999999999999
Q ss_pred hhcCCCCCCEE-EcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCC
Q psy14766 99 AFRGVTNMDEL-DLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQ 175 (207)
Q Consensus 99 ~f~~l~~L~~L-~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 175 (207)
+|+++.++-.| +.++|+++.+|..+| +..++.|.+.-|++..+..+.|..++++..|.+-.|.+..+....+..+..
T Consensus 110 AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~ 189 (498)
T KOG4237|consen 110 AFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAA 189 (498)
T ss_pred hhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhc
Confidence 99999997665 455599999999999 899999999999999999999999999999999999999999888999999
Q ss_pred ccEEEeCCCCCC
Q psy14766 176 IRRPTITGQWKP 187 (207)
Q Consensus 176 L~~l~l~~n~l~ 187 (207)
++.+++..|++-
T Consensus 190 i~tlhlA~np~i 201 (498)
T KOG4237|consen 190 IKTLHLAQNPFI 201 (498)
T ss_pred cchHhhhcCccc
Confidence 999999999844
No 2
>KOG4194|consensus
Probab=99.85 E-value=2.5e-21 Score=157.44 Aligned_cols=177 Identities=28% Similarity=0.460 Sum_probs=147.0
Q ss_pred cCCCCCCEeeecCCCeeEEecCCCCccc-----CCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceee
Q psy14766 21 ASCPLGCSCKWKAGKRTVECIDRNFYTI-----PEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFV 95 (207)
Q Consensus 21 ~~cp~~c~c~~~~~~~~~~c~~~~l~~~-----p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 95 (207)
..||..|.|. ...++|++++++.+ +..+++.++.|++++|.+..+....|. .+++|+++++.+|.++.+
T Consensus 44 ~~cpa~c~c~----~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~--nl~nLq~v~l~~N~Lt~I 117 (873)
T KOG4194|consen 44 SECPATCPCN----TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFY--NLPNLQEVNLNKNELTRI 117 (873)
T ss_pred ccCCCcCCCC----ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHh--cCCcceeeeeccchhhhc
Confidence 4899999999 68899999999987 667778999999999999999999888 899999999999999988
Q ss_pred CchhhcCC-CCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCC
Q psy14766 96 DDRAFRGV-TNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172 (207)
Q Consensus 96 ~~~~f~~l-~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 172 (207)
+ .|+.. .+++.|++.+|.++++..... ++.|+.||++.|.|+.++...|..-.++++|+|++|.|+.+..+.|.+
T Consensus 118 P--~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ 195 (873)
T KOG4194|consen 118 P--RFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDS 195 (873)
T ss_pred c--cccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccc
Confidence 4 34444 448888888888887766555 778888888888888888777777778888888888888888888888
Q ss_pred CCCccEEEeCCCCCCCCCCchhhhhcccccCcC
Q psy14766 173 SDQIRRPTITGQWKPRQNEDSDAQLAKGRAHDF 205 (207)
Q Consensus 173 l~~L~~l~l~~n~l~~~~~~~~~~l~~~~~~~~ 205 (207)
+.+|.++.|+.|+++..++..|..+++++.+.+
T Consensus 196 lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 196 LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred cchheeeecccCcccccCHHHhhhcchhhhhhc
Confidence 888888888888888888888887777665544
No 3
>KOG4194|consensus
Probab=99.78 E-value=6.6e-20 Score=149.23 Aligned_cols=168 Identities=18% Similarity=0.309 Sum_probs=112.7
Q ss_pred eeEEecCCCCcccCCCC-C--CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCch--------------
Q psy14766 36 RTVECIDRNFYTIPEGI-D--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR-------------- 98 (207)
Q Consensus 36 ~~~~c~~~~l~~~p~~~-~--~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-------------- 98 (207)
+.++.+.+.+.++|..- + .++++|++++|.|+.+..+.|. ++.+|..|.+++|.++.+++.
T Consensus 152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~--~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFD--SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred hhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccccc--ccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence 34555555555555422 2 2555555555555555555554 444555555555555555444
Q ss_pred ----------hhcCCCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeec
Q psy14766 99 ----------AFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166 (207)
Q Consensus 99 ----------~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 166 (207)
.|.++++|+.+.+.+|.+..+.+++| +.++++|+++.|++..+..+.+.++++|+.|+||.|.|..|.
T Consensus 230 rN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 230 RNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred ccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee
Confidence 44455555555555555555666666 777888888888888887777788888889999999999888
Q ss_pred cccCCCCCCccEEEeCCCCCCCCCCchhhhhcccccCcC
Q psy14766 167 SEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAKGRAHDF 205 (207)
Q Consensus 167 ~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~~~~~~~ 205 (207)
.+.|+..++|+.|+|++|.+++..++.|..+..++++.+
T Consensus 310 ~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 888888889999999999999888888887776665543
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.69 E-value=1.4e-16 Score=143.03 Aligned_cols=166 Identities=17% Similarity=0.124 Sum_probs=84.1
Q ss_pred CeeEEecCCCCc-ccCCCCC---CCceEEEeecCCcc----------------------ccchhhhhhcCCCcceEEEec
Q psy14766 35 KRTVECIDRNFY-TIPEGID---LDTQVLDLSSNNIN----------------------VLQKEIFLQMGITNIQKLYLR 88 (207)
Q Consensus 35 ~~~~~c~~~~l~-~~p~~~~---~~l~~L~ls~n~i~----------------------~~~~~~~~~~~~~~L~~L~l~ 88 (207)
.+.++.+++.+. .+|..+. .++++|++++|.++ ...+..+. .+++|+.|+++
T Consensus 95 L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~--~l~~L~~L~L~ 172 (968)
T PLN00113 95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIG--SFSSLKVLDLG 172 (968)
T ss_pred CCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHh--cCCCCCEEECc
Confidence 445666666655 4554332 35555555555544 32233333 44555555555
Q ss_pred CCcceeeCchhhcCCCCCCEEEcCCCCCC-CcCCccc-ccccceeeccCCccccccccccCCCCCccEEecCCCceeeec
Q psy14766 89 KCKLEFVDDRAFRGVTNMDELDLSDNLLS-TVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166 (207)
Q Consensus 89 ~n~l~~~~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 166 (207)
+|.+....|..|.++++|+.|++++|.+. .+|.... +.+|+.|++++|.+.+..+..++.+++|++|++++|.+++..
T Consensus 173 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 252 (968)
T PLN00113 173 GNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI 252 (968)
T ss_pred cCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecccc
Confidence 55555444455555555555555555544 2333222 455555555555555444444555555555555555555444
Q ss_pred cccCCCCCCccEEEeCCCCCCCCCCchhhhhccccc
Q psy14766 167 SEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAKGRA 202 (207)
Q Consensus 167 ~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~~~~ 202 (207)
+..+.++++|+.|++++|.+.+..|..+..+.+++.
T Consensus 253 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 288 (968)
T PLN00113 253 PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS 288 (968)
T ss_pred ChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCE
Confidence 444555555555555555555444444444444433
No 5
>KOG0617|consensus
Probab=99.69 E-value=5.6e-19 Score=124.03 Aligned_cols=152 Identities=18% Similarity=0.319 Sum_probs=135.3
Q ss_pred CeeEEecCCCCcccCCCCC--CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcC
Q psy14766 35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~--~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~ 112 (207)
-+++..+.++++.+|+.+. .+++.|++++|++.++|.... .++.|+.|++.-|++..+ |.+|+.++.|+.||++
T Consensus 35 ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~is---sl~klr~lnvgmnrl~~l-prgfgs~p~levldlt 110 (264)
T KOG0617|consen 35 ITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSIS---SLPKLRILNVGMNRLNIL-PRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhh---hchhhhheecchhhhhcC-ccccCCCchhhhhhcc
Confidence 4667788899999999886 599999999999999999887 589999999999998887 6799999999999999
Q ss_pred CCCCC--CcCCccc-ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCC
Q psy14766 113 DNLLS--TVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQ 189 (207)
Q Consensus 113 ~n~l~--~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~ 189 (207)
+|++. .+|...| +..|+.|.+++|.+.-++++ .+.+++|++|.+..|.+-++|.+ ++.+.+|+.|++.+|+++..
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccceeeec
Confidence 99987 6788777 89999999999999988776 78999999999999999999865 78899999999999999977
Q ss_pred CCc
Q psy14766 190 NED 192 (207)
Q Consensus 190 ~~~ 192 (207)
+|+
T Consensus 189 ppe 191 (264)
T KOG0617|consen 189 PPE 191 (264)
T ss_pred Chh
Confidence 654
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.65 E-value=7e-16 Score=138.53 Aligned_cols=145 Identities=16% Similarity=0.142 Sum_probs=83.0
Q ss_pred CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCC-CcCCccc-cccccee
Q psy14766 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS-TVPSLIY-IPYLKSI 131 (207)
Q Consensus 54 ~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~-~~~L~~L 131 (207)
++++.|++++|.+.+..+..+. .+++|+.|++++|.+....|..++.+++|+.|++++|.+. .+|.... +++|+.|
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLT--NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred CCCCEEECccCcccccCChhhh--hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence 4677777777777655455554 5667777777777766655666666666666666666665 3443333 5566666
Q ss_pred eccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCchhhhhccc
Q psy14766 132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAKG 200 (207)
Q Consensus 132 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~~ 200 (207)
++++|.+.+..+..++.+++|++|++++|.+.+..+..+.++++|+.|++++|.+.+..|..+..++++
T Consensus 242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 310 (968)
T PLN00113 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL 310 (968)
T ss_pred ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCC
Confidence 666666555444445555555555555555554433334444555555555555544444444444333
No 7
>KOG4237|consensus
Probab=99.59 E-value=4e-17 Score=127.55 Aligned_cols=81 Identities=26% Similarity=0.386 Sum_probs=67.6
Q ss_pred CeeEEecCCCCcccCCCCC---CCceEEEeecCCccccchhhhhhcCCCcceEEEecC-CcceeeCchhhcCCCCCCEEE
Q psy14766 35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVTNMDELD 110 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~---~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~f~~l~~L~~L~ 110 (207)
.+.++...++++.||++.. +.++.+++|+|.|+.+.+++|. ++.++..|-+.+ |+|+.++.+.|.++.+++.|.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~--GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFK--GLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhh--hhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 5668889999999999776 4899999999999999999999 888887777766 999999988888877666666
Q ss_pred cCCCCCC
Q psy14766 111 LSDNLLS 117 (207)
Q Consensus 111 l~~n~l~ 117 (207)
+.-|++.
T Consensus 147 lNan~i~ 153 (498)
T KOG4237|consen 147 LNANHIN 153 (498)
T ss_pred cChhhhc
Confidence 6555543
No 8
>KOG0472|consensus
Probab=99.55 E-value=3.5e-16 Score=122.75 Aligned_cols=149 Identities=15% Similarity=0.272 Sum_probs=119.3
Q ss_pred CeeEEecCCCCcccCCCCC-----CCceEEEeecCCccccchhh-----------------------hhhcCCCcceEEE
Q psy14766 35 KRTVECIDRNFYTIPEGID-----LDTQVLDLSSNNINVLQKEI-----------------------FLQMGITNIQKLY 86 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~-----~~l~~L~ls~n~i~~~~~~~-----------------------~~~~~~~~L~~L~ 86 (207)
.++++.++..++.+|+.+. .-++.++++.|++.++|.+. .. .+++|..|+
T Consensus 364 tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~--~l~kLt~L~ 441 (565)
T KOG0472|consen 364 TKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELS--QLQKLTFLD 441 (565)
T ss_pred hhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHH--hhhcceeee
Confidence 3445556666666666443 13556666666665555432 12 478899999
Q ss_pred ecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc-ccccceeeccCCccccccccccCCCCCccEEecCCCceeee
Q psy14766 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165 (207)
Q Consensus 87 l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~ 165 (207)
+++|.+..++ ..++.+..||.++++.|++..+|.-.. +..++.+-.++|++..+++..++++.+|.+|||.+|.+..+
T Consensus 442 L~NN~Ln~LP-~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I 520 (565)
T KOG0472|consen 442 LSNNLLNDLP-EEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQI 520 (565)
T ss_pred cccchhhhcc-hhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhC
Confidence 9999999995 566678889999999999999998777 77788888888999999998899999999999999999999
Q ss_pred ccccCCCCCCccEEEeCCCCCC
Q psy14766 166 YSEAFYGSDQIRRPTITGQWKP 187 (207)
Q Consensus 166 ~~~~~~~l~~L~~l~l~~n~l~ 187 (207)
|+. ++++.+|++|.++||++.
T Consensus 521 Pp~-LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 521 PPI-LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred Chh-hccccceeEEEecCCccC
Confidence 976 899999999999999998
No 9
>KOG0444|consensus
Probab=99.48 E-value=3.8e-15 Score=123.04 Aligned_cols=150 Identities=18% Similarity=0.332 Sum_probs=92.8
Q ss_pred CCeeEEecCCCCcccCCCCC--CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEc
Q psy14766 34 GKRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (207)
Q Consensus 34 ~~~~~~c~~~~l~~~p~~~~--~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l 111 (207)
..++++.+.+++.++|.++. .+.-.|++|+|+|..+|...|. .+..|-.|++++|++..++| ...++.+|++|++
T Consensus 104 dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfi--nLtDLLfLDLS~NrLe~LPP-Q~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 104 DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFI--NLTDLLFLDLSNNRLEMLPP-QIRRLSMLQTLKL 180 (1255)
T ss_pred cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHH--hhHhHhhhccccchhhhcCH-HHHHHhhhhhhhc
Confidence 35677888888888887664 4777788888888888877777 67777778888888877755 5666777777777
Q ss_pred CCCCCCCc-----C---------------------Cccc-ccccceeeccCCccccccccccCCCCCccEEecCCCceee
Q psy14766 112 SDNLLSTV-----P---------------------SLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT 164 (207)
Q Consensus 112 ~~n~l~~~-----~---------------------~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 164 (207)
++|.+..+ | ...- +.+|..+|++.|.+..+|. .+-.+++|+.|+||+|+|++
T Consensus 181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPe-cly~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPE-CLYKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchH-HHhhhhhhheeccCcCceee
Confidence 77754321 1 1111 3344445555555554433 24445555566666666655
Q ss_pred eccccCCCCCCccEEEeCCCCCCC
Q psy14766 165 IYSEAFYGSDQIRRPTITGQWKPR 188 (207)
Q Consensus 165 ~~~~~~~~l~~L~~l~l~~n~l~~ 188 (207)
+... .+.+.+++.|+++.|+++.
T Consensus 260 L~~~-~~~W~~lEtLNlSrNQLt~ 282 (1255)
T KOG0444|consen 260 LNMT-EGEWENLETLNLSRNQLTV 282 (1255)
T ss_pred eecc-HHHHhhhhhhccccchhcc
Confidence 5422 3344555566666665553
No 10
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.47 E-value=2.6e-14 Score=102.78 Aligned_cols=141 Identities=18% Similarity=0.290 Sum_probs=42.9
Q ss_pred cCCCCcccCCCCC-CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCc
Q psy14766 41 IDRNFYTIPEGID-LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119 (207)
Q Consensus 41 ~~~~l~~~p~~~~-~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~ 119 (207)
+...++++|.... ..++.|++++|.|+.+..-.- .+.+|+.|++++|.++.+. .+..++.|+.|++++|+++.+
T Consensus 5 t~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~---~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 5 TANMIEQIAQYNNPVKLRELNLRGNQISTIENLGA---TLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSI 79 (175)
T ss_dssp -------------------------------S--T---T-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-
T ss_pred cccccccccccccccccccccccccccccccchhh---hhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCcc
Confidence 3444555555332 356677777777776543221 3566777777777777764 466677777777777777766
Q ss_pred CCccc--ccccceeeccCCccccccc-cccCCCCCccEEecCCCceeeecc---ccCCCCCCccEEEeCCCCCCC
Q psy14766 120 PSLIY--IPYLKSINLAHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTIYS---EAFYGSDQIRRPTITGQWKPR 188 (207)
Q Consensus 120 ~~~~~--~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~l~l~~n~l~~ 188 (207)
+.... +++|+.|++++|+|..+.. ..+..+++|+.|++.+|.++..+. ..+..+++|+.|+ +..++.
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD--~~~V~~ 152 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD--GQDVTE 152 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET--TEETTS
T ss_pred ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC--CEEccH
Confidence 54322 5677777777777665543 345566777777777777765432 3345566666655 444443
No 11
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.47 E-value=1.9e-14 Score=103.51 Aligned_cols=126 Identities=21% Similarity=0.289 Sum_probs=52.5
Q ss_pred CCCcceEEEecCCcceeeCchhhc-CCCCCCEEEcCCCCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEe
Q psy14766 78 GITNIQKLYLRKCKLEFVDDRAFR-GVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYID 156 (207)
Q Consensus 78 ~~~~L~~L~l~~n~l~~~~~~~f~-~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 156 (207)
+...+++|++++|.|+.+. .++ .+.+|+.|++++|.++.++....++.|+.|++++|.|+.+.+.....+++|+.|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccc--chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 4567899999999999984 455 5789999999999999988755589999999999999998654334689999999
Q ss_pred cCCCceeeecc-ccCCCCCCccEEEeCCCCCCCCCCc---hhhhhcccccCcC
Q psy14766 157 MSNCQIHTIYS-EAFYGSDQIRRPTITGQWKPRQNED---SDAQLAKGRAHDF 205 (207)
Q Consensus 157 L~~n~i~~~~~-~~~~~l~~L~~l~l~~n~l~~~~~~---~~~~l~~~~~~~~ 205 (207)
+++|+|.++.. ..++.+++|+.|++.+|+++..... .+..++.++.+.+
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 99999988764 5577899999999999999854322 2344445554443
No 12
>KOG0617|consensus
Probab=99.44 E-value=4e-15 Score=104.76 Aligned_cols=154 Identities=15% Similarity=0.198 Sum_probs=129.0
Q ss_pred cccCCCCC-CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc
Q psy14766 46 YTIPEGID-LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY 124 (207)
Q Consensus 46 ~~~p~~~~-~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~ 124 (207)
.++|.-+. +.++.|.+|+|.++.+|+..- .+.+|+.|++++|++++++ ..++.++.|+.|+++-|++..+|.+..
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia---~l~nlevln~~nnqie~lp-~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIA---ELKNLEVLNLSNNQIEELP-TSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHH---HhhhhhhhhcccchhhhcC-hhhhhchhhhheecchhhhhcCccccC
Confidence 34554333 589999999999999999876 5889999999999999995 488999999999999999999999877
Q ss_pred -ccccceeeccCCcccc-ccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCchhhhhccccc
Q psy14766 125 -IPYLKSINLAHNPIHQ-ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAKGRA 202 (207)
Q Consensus 125 -~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~~~~ 202 (207)
++.|+.||+..|++.. ..|+.|..+..|+.|.|+.|.+.-+|++ .+++.+|+.|.+.+|.+-.. |...+.++.+++
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdndll~l-pkeig~lt~lre 177 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRE 177 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCchhhC-cHHHHHHHHHHH
Confidence 9999999999998865 2345577788999999999999988866 78999999999999988754 666777766665
Q ss_pred CcC
Q psy14766 203 HDF 205 (207)
Q Consensus 203 ~~~ 205 (207)
+..
T Consensus 178 lhi 180 (264)
T KOG0617|consen 178 LHI 180 (264)
T ss_pred Hhc
Confidence 543
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.41 E-value=1.8e-12 Score=112.06 Aligned_cols=104 Identities=18% Similarity=0.303 Sum_probs=71.4
Q ss_pred EeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCC
Q psy14766 28 SCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107 (207)
Q Consensus 28 ~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~ 107 (207)
.|.. .+...++|++..++.+|+.++.+++.|.+++|.++.+|.. .++|++|++++|+++.+++ . .++|+
T Consensus 197 ~Cl~-~~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l------p~~Lk~LdLs~N~LtsLP~-l---p~sL~ 265 (788)
T PRK15387 197 ACLN-NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPAL------PPELRTLEVSGNQLTSLPV-L---PPGLL 265 (788)
T ss_pred HHhc-CCCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCCC------CCCCcEEEecCCccCcccC-c---ccccc
Confidence 4543 2356899999999999998888999999999999988742 4689999999999888753 1 23455
Q ss_pred EEEcCCCCCCCcCCcc------------------cccccceeeccCCcccccc
Q psy14766 108 ELDLSDNLLSTVPSLI------------------YIPYLKSINLAHNPIHQIS 142 (207)
Q Consensus 108 ~L~l~~n~l~~~~~~~------------------~~~~L~~L~l~~n~i~~~~ 142 (207)
.|++++|.++.+|... ..++|+.|++++|++..++
T Consensus 266 ~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp 318 (788)
T PRK15387 266 ELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLP 318 (788)
T ss_pred eeeccCCchhhhhhchhhcCEEECcCCccccccccccccceeECCCCccccCC
Confidence 5555555544443310 1345666666666665543
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=1.2e-12 Score=113.42 Aligned_cols=122 Identities=24% Similarity=0.367 Sum_probs=91.8
Q ss_pred CCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCC
Q psy14766 34 GKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113 (207)
Q Consensus 34 ~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~ 113 (207)
..+.+++.+.+++.+|..++.+++.|++++|.++.+|...+ .+|+.|++++|+++.++. .+. .+|+.|++++
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~-----~nL~~L~Ls~N~LtsLP~-~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ-----GNIKTLYANSNQLTSIPA-TLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc-----cCCCEEECCCCccccCCh-hhh--ccccEEECcC
Confidence 35678889999999999888899999999999999887654 478899999998888754 332 3678888888
Q ss_pred CCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeecc
Q psy14766 114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167 (207)
Q Consensus 114 n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 167 (207)
|.+..+|... ..+|+.|++++|++..++.. + .++|+.|++++|+++.+|.
T Consensus 251 N~L~~LP~~l-~s~L~~L~Ls~N~L~~LP~~-l--~~sL~~L~Ls~N~Lt~LP~ 300 (754)
T PRK15370 251 NRITELPERL-PSALQSLDLFHNKISCLPEN-L--PEELRYLSVYDNSIRTLPA 300 (754)
T ss_pred CccCcCChhH-hCCCCEEECcCCccCccccc-c--CCCCcEEECCCCccccCcc
Confidence 8877776543 35677788888777766543 2 2467777777777776653
No 15
>KOG0444|consensus
Probab=99.41 E-value=4.1e-14 Score=117.09 Aligned_cols=147 Identities=26% Similarity=0.383 Sum_probs=119.5
Q ss_pred EecCCCCc--ccCCCCC--CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCC
Q psy14766 39 ECIDRNFY--TIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114 (207)
Q Consensus 39 ~c~~~~l~--~~p~~~~--~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n 114 (207)
..+.+.++ .||+.+. ..++.|++|+|+++++|...- ...++-.|++++|+|..|+.+.|-+++-|-.||+|+|
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE---~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLE---YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhhhcchhhh---hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 33444444 5787776 489999999999999988764 4678899999999999999999999999999999999
Q ss_pred CCCCcCCccc-ccccceeeccCCccccc-----c--------------------ccccCCCCCccEEecCCCceeeeccc
Q psy14766 115 LLSTVPSLIY-IPYLKSINLAHNPIHQI-----S--------------------SYSFQSTPGIRYIDMSNCQIHTIYSE 168 (207)
Q Consensus 115 ~l~~~~~~~~-~~~L~~L~l~~n~i~~~-----~--------------------~~~~~~l~~L~~L~L~~n~i~~~~~~ 168 (207)
++..+|+..- +..|++|.+++|++... | |.++..+.+|+.+|+|.|.+..+| +
T Consensus 161 rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP-e 239 (1255)
T KOG0444|consen 161 RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP-E 239 (1255)
T ss_pred hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch-H
Confidence 9999999777 88899999999865332 1 223556677888888988888877 5
Q ss_pred cCCCCCCccEEEeCCCCCCCC
Q psy14766 169 AFYGSDQIRRPTITGQWKPRQ 189 (207)
Q Consensus 169 ~~~~l~~L~~l~l~~n~l~~~ 189 (207)
++..+++|+.|+|++|+++..
T Consensus 240 cly~l~~LrrLNLS~N~iteL 260 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITEL 260 (1255)
T ss_pred HHhhhhhhheeccCcCceeee
Confidence 577888999999999988864
No 16
>KOG0618|consensus
Probab=99.39 E-value=8.7e-15 Score=124.85 Aligned_cols=158 Identities=20% Similarity=0.304 Sum_probs=92.9
Q ss_pred CCCCEeeecCCCeeEEecCCCCcccCCCCC--CCceEEEeecCCccccchhhhhhc------------------------
Q psy14766 24 PLGCSCKWKAGKRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQM------------------------ 77 (207)
Q Consensus 24 p~~c~c~~~~~~~~~~c~~~~l~~~p~~~~--~~l~~L~ls~n~i~~~~~~~~~~~------------------------ 77 (207)
|.+|.|.| +...+.|..+.++++|+... +.+++|++..|.+..+|+..+...
T Consensus 280 p~ri~~~~--~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~ 357 (1081)
T KOG0618|consen 280 PLRISRIT--SLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN 357 (1081)
T ss_pred HHHHhhhh--hHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence 45666664 34567788888888888554 588999999999888877544321
Q ss_pred -----------------------CCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc-ccccceeec
Q psy14766 78 -----------------------GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINL 133 (207)
Q Consensus 78 -----------------------~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~-~~~L~~L~l 133 (207)
++.+|+.|++++|++..++...+.++..|+.|++|+|.++.+|.... ++.|++|..
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence 23445555555555555555555555555555555555555554333 455555555
Q ss_pred cCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCC
Q psy14766 134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQW 185 (207)
Q Consensus 134 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~ 185 (207)
..|.+..+| .+..++.|+.+|++.|+++.+.-......++|++|+++||.
T Consensus 438 hsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 438 HSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cCCceeech--hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 555555544 25556666677777766665432111122566677777664
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.37 E-value=1.2e-12 Score=113.25 Aligned_cols=108 Identities=15% Similarity=0.176 Sum_probs=72.5
Q ss_pred cceEEEecCCcceeeCchhhc-----------------CCCCCCEEEcCCCCCCCcCCcccccccceeeccCCccccccc
Q psy14766 81 NIQKLYLRKCKLEFVDDRAFR-----------------GVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISS 143 (207)
Q Consensus 81 ~L~~L~l~~n~l~~~~~~~f~-----------------~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~ 143 (207)
+|+.|++++|+++.+++ ... ...+|+.|++++|.++.+|.. .++|+.|++++|+++.++.
T Consensus 343 ~Lq~LdLS~N~Ls~LP~-lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~LssIP~ 419 (788)
T PRK15387 343 GLQELSVSDNQLASLPT-LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTSLPM 419 (788)
T ss_pred ccceEecCCCccCCCCC-CCcccceehhhccccccCcccccccceEEecCCcccCCCCc--ccCCCEEEccCCcCCCCCc
Confidence 56667777776666532 111 113466666666666665543 3567777777777776653
Q ss_pred cccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCchhhh
Q psy14766 144 YSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQ 196 (207)
Q Consensus 144 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~ 196 (207)
. ..+|+.|++++|+++.+|.. +.++.+|+.+++++|++++..+..+..
T Consensus 420 l----~~~L~~L~Ls~NqLt~LP~s-l~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 420 L----PSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred c----hhhhhhhhhccCcccccChH-HhhccCCCeEECCCCCCCchHHHHHHH
Confidence 1 34678888888888888754 778889999999999999776665533
No 18
>KOG1259|consensus
Probab=99.37 E-value=7.6e-14 Score=106.34 Aligned_cols=136 Identities=21% Similarity=0.283 Sum_probs=116.3
Q ss_pred CceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc-ccccceeec
Q psy14766 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINL 133 (207)
Q Consensus 55 ~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~-~~~L~~L~l 133 (207)
.++.+++|+|.|+.+....- -.+.++.|++++|.+..+. .++.+++|+.||+++|.++++..+-. +.+++.|.+
T Consensus 285 ~LtelDLS~N~I~~iDESvK---L~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVK---LAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhccccccchhhhhhhhh---hccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 47889999999998776553 4789999999999999985 48889999999999999998887655 899999999
Q ss_pred cCCccccccccccCCCCCccEEecCCCceeeecc-ccCCCCCCccEEEeCCCCCCCCCCchhhhh
Q psy14766 134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS-EAFYGSDQIRRPTITGQWKPRQNEDSDAQL 197 (207)
Q Consensus 134 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l 197 (207)
++|.|..... +..+.+|..||+++|+|..... ..+++++-|+++.+.+|++.+..+.....+
T Consensus 360 a~N~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRTKVL 422 (490)
T KOG1259|consen 360 AQNKIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRTKVL 422 (490)
T ss_pred hhhhHhhhhh--hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHHHHHH
Confidence 9999887754 6778999999999999998764 668899999999999999998765544433
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.35 E-value=2.3e-12 Score=111.63 Aligned_cols=148 Identities=18% Similarity=0.260 Sum_probs=71.0
Q ss_pred CeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhc----------------CCCcceEEEecCCcceeeCch
Q psy14766 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM----------------GITNIQKLYLRKCKLEFVDDR 98 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~----------------~~~~L~~L~l~~n~l~~~~~~ 98 (207)
...++++++.++.+|..+..+++.|++++|.++.+|......+ -..+|+.|++++|+++.++.
T Consensus 201 L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~LP~- 279 (754)
T PRK15370 201 ITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKISCLPE- 279 (754)
T ss_pred CcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhhccccEEECcCCccCcCChhHhCCCCEEECcCCccCcccc-
Confidence 3455666666666666555566666666666555544322100 01245555555555554422
Q ss_pred hhcCCCCCCEEEcCCCCCCCcCCccc--------------------ccccceeeccCCccccccccccCCCCCccEEecC
Q psy14766 99 AFRGVTNMDELDLSDNLLSTVPSLIY--------------------IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMS 158 (207)
Q Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~--------------------~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 158 (207)
.+. .+|+.|++++|.++.+|.... .++|+.|++++|.++.++.. + .++|+.|+++
T Consensus 280 ~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~-l--~~sL~~L~Ls 354 (754)
T PRK15370 280 NLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPAS-L--PPELQVLDVS 354 (754)
T ss_pred ccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChh-h--cCcccEEECC
Confidence 221 345566666655554443211 12233333333333333221 1 1456666666
Q ss_pred CCceeeeccccCCCCCCccEEEeCCCCCCCCCC
Q psy14766 159 NCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNE 191 (207)
Q Consensus 159 ~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 191 (207)
+|+++.+|.. + .++|+.|++++|.++..++
T Consensus 355 ~N~L~~LP~~-l--p~~L~~LdLs~N~Lt~LP~ 384 (754)
T PRK15370 355 KNQITVLPET-L--PPTITTLDVSRNALTNLPE 384 (754)
T ss_pred CCCCCcCChh-h--cCCcCEEECCCCcCCCCCH
Confidence 6666655432 2 2356666666666665433
No 20
>KOG0472|consensus
Probab=99.31 E-value=3e-14 Score=112.02 Aligned_cols=151 Identities=16% Similarity=0.248 Sum_probs=106.8
Q ss_pred cCCCCcccCCCCC--CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCC
Q psy14766 41 IDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118 (207)
Q Consensus 41 ~~~~l~~~p~~~~--~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~ 118 (207)
.++.+..+|.++. ..+..+++.+|+++.++++.. .+..|++++...|-++.++ ..++++.+|+-|++.+|.+..
T Consensus 145 ~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i---~m~~L~~ld~~~N~L~tlP-~~lg~l~~L~~LyL~~Nki~~ 220 (565)
T KOG0472|consen 145 TNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI---AMKRLKHLDCNSNLLETLP-PELGGLESLELLYLRRNKIRF 220 (565)
T ss_pred cccccccCchHHHHHHHHHHhhccccchhhCCHHHH---HHHHHHhcccchhhhhcCC-hhhcchhhhHHHHhhhccccc
Confidence 3444555555443 245556666666666666665 3566777777777777774 467777777777777787777
Q ss_pred cCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCchhhhh
Q psy14766 119 VPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQL 197 (207)
Q Consensus 119 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l 197 (207)
+|....++.|..++++.|+|.-++.+..++++.+.+|||..|++++.|.+ +-.+++|+.+++++|.+++.++ ..+.+
T Consensus 221 lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde-~clLrsL~rLDlSNN~is~Lp~-sLgnl 297 (565)
T KOG0472|consen 221 LPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE-ICLLRSLERLDLSNNDISSLPY-SLGNL 297 (565)
T ss_pred CCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH-HHHhhhhhhhcccCCccccCCc-ccccc
Confidence 77443377778888888888887777777888899999999999999876 3467788899999999887643 44444
No 21
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.30 E-value=5.1e-12 Score=75.48 Aligned_cols=61 Identities=26% Similarity=0.464 Sum_probs=55.4
Q ss_pred cccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCC
Q psy14766 126 PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWK 186 (207)
Q Consensus 126 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l 186 (207)
++|+.|++++|+++.++++.|..+++|++|++++|.++.+++++|.++++|+.+++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688999999999999988899999999999999999999999999999999999999875
No 22
>KOG0618|consensus
Probab=99.21 E-value=1.5e-12 Score=111.49 Aligned_cols=147 Identities=18% Similarity=0.265 Sum_probs=118.9
Q ss_pred CeeEEecCCCCcc--cCCCC-CCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEc
Q psy14766 35 KRTVECIDRNFYT--IPEGI-DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (207)
Q Consensus 35 ~~~~~c~~~~l~~--~p~~~-~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l 111 (207)
...+.|.++.+++ +|.-. ...++.|++++|.+..+|+..+. ++..|++|++++|+++.++ ....++..|++|..
T Consensus 361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~--kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLR--KLEELEELNLSGNKLTTLP-DTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHh--chHHhHHHhcccchhhhhh-HHHHhhhhhHHHhh
Confidence 3446666777665 33311 25899999999999999999998 8999999999999999995 78999999999999
Q ss_pred CCCCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCC
Q psy14766 112 SDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQ 184 (207)
Q Consensus 112 ~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n 184 (207)
.+|++..+|....++.|+.+|++.|.++.+.-...-..++|++|||++|.-..++.+-+..++++...++.-|
T Consensus 438 hsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 438 HSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred cCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 9999999996655999999999999998865543333489999999999877776666666666666666555
No 23
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.17 E-value=4.2e-11 Score=71.47 Aligned_cols=60 Identities=32% Similarity=0.485 Sum_probs=46.1
Q ss_pred CceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCC
Q psy14766 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116 (207)
Q Consensus 55 ~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l 116 (207)
+++.|++++|.++.++++.|. ++++|++|++++|.++.++++.|.++++|+.+++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~--~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFS--NLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTT--TGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHc--CCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 567777777777777777777 677788888888777777777777777788877777753
No 24
>KOG0532|consensus
Probab=99.06 E-value=2e-11 Score=99.96 Aligned_cols=141 Identities=20% Similarity=0.299 Sum_probs=103.3
Q ss_pred CceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc-ccccceeec
Q psy14766 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINL 133 (207)
Q Consensus 55 ~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~-~~~L~~L~l 133 (207)
.++.++++.|++..+|...+ .++ |+.+.+++|+++.++ ...+....|..+|.+.|.+..+|.... +.+|+.|.+
T Consensus 122 ~lt~l~ls~NqlS~lp~~lC---~lp-Lkvli~sNNkl~~lp-~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 122 ALTFLDLSSNQLSHLPDGLC---DLP-LKVLIVSNNKLTSLP-EEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNV 196 (722)
T ss_pred HHHHhhhccchhhcCChhhh---cCc-ceeEEEecCccccCC-cccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHH
Confidence 46666777777777777766 233 777777777777774 355566777778888888777777666 777778888
Q ss_pred cCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCchhhhhcccccCcCC
Q psy14766 134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAKGRAHDFR 206 (207)
Q Consensus 134 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~~~~~~~~ 206 (207)
..|++..++++ +..+ .|..||++.|++..+|-. |.++++|++|-|.+|++..- ......+|+.+-|+
T Consensus 197 rRn~l~~lp~E-l~~L-pLi~lDfScNkis~iPv~-fr~m~~Lq~l~LenNPLqSP---PAqIC~kGkVHIFK 263 (722)
T KOG0532|consen 197 RRNHLEDLPEE-LCSL-PLIRLDFSCNKISYLPVD-FRKMRHLQVLQLENNPLQSP---PAQICEKGKVHIFK 263 (722)
T ss_pred hhhhhhhCCHH-HhCC-ceeeeecccCceeecchh-hhhhhhheeeeeccCCCCCC---hHHHHhccceeeee
Confidence 88888887775 4433 488999999999999854 88899999999999999843 23444566665554
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.03 E-value=8.8e-10 Score=94.73 Aligned_cols=103 Identities=15% Similarity=0.190 Sum_probs=49.6
Q ss_pred ceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCC-CcCCccc-ccccceeec
Q psy14766 56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS-TVPSLIY-IPYLKSINL 133 (207)
Q Consensus 56 l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~-~~~L~~L~l 133 (207)
++.|++++|.+.+..+..+. .+++|+.|++++|.+....|..++.+++|+.|++++|+++ .+|.... +++|+.|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~--~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDIS--KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHh--CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 45555555555543333343 4555555555555555444445555555555555555554 3333322 455555555
Q ss_pred cCCccccccccccCCC-CCccEEecCCC
Q psy14766 134 AHNPIHQISSYSFQST-PGIRYIDMSNC 160 (207)
Q Consensus 134 ~~n~i~~~~~~~~~~l-~~L~~L~L~~n 160 (207)
++|++.+..|..+... .++..+++++|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCC
Confidence 5555544433333321 23334444444
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.95 E-value=7.4e-10 Score=90.41 Aligned_cols=152 Identities=25% Similarity=0.339 Sum_probs=104.3
Q ss_pred CeeEEecCCCCcccCCCCC--C-CceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEc
Q psy14766 35 KRTVECIDRNFYTIPEGID--L-DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~--~-~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l 111 (207)
.+.+.+.+..+.++|+... . +++.|++++|.+..++.... .+++|+.|+++.|++..+++ ..+..+.|+.+++
T Consensus 118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~---~l~~L~~L~l~~N~l~~l~~-~~~~~~~L~~L~l 193 (394)
T COG4886 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLR---NLPNLKNLDLSFNDLSDLPK-LLSNLSNLNNLDL 193 (394)
T ss_pred eeEEecCCcccccCccccccchhhcccccccccchhhhhhhhh---ccccccccccCCchhhhhhh-hhhhhhhhhheec
Confidence 5667777777888877443 2 68888888888888763333 57888888888888888854 3336778888888
Q ss_pred CCCCCCCcCCccc-ccccceeeccCCcccccc----------------------ccccCCCCCccEEecCCCceeeeccc
Q psy14766 112 SDNLLSTVPSLIY-IPYLKSINLAHNPIHQIS----------------------SYSFQSTPGIRYIDMSNCQIHTIYSE 168 (207)
Q Consensus 112 ~~n~l~~~~~~~~-~~~L~~L~l~~n~i~~~~----------------------~~~~~~l~~L~~L~L~~n~i~~~~~~ 168 (207)
++|.++.+|.... ...|+.+.++.|.+...+ +..++.++++++|++++|+++.++.
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~- 272 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS- 272 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc-
Confidence 8888888877643 445666666666322111 1234455667777777777777765
Q ss_pred cCCCCCCccEEEeCCCCCCCCCCc
Q psy14766 169 AFYGSDQIRRPTITGQWKPRQNED 192 (207)
Q Consensus 169 ~~~~l~~L~~l~l~~n~l~~~~~~ 192 (207)
++...+++.+++++|.+....+.
T Consensus 273 -~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 273 -LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred -ccccCccCEEeccCccccccchh
Confidence 66677777777777777655443
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.95 E-value=9e-09 Score=94.32 Aligned_cols=118 Identities=14% Similarity=0.173 Sum_probs=75.6
Q ss_pred CcceEEEecCCcceeeCchhhcCCCCCCEEEcCCC-CCCCcCCcccccccceeeccCCc-cccccccccCCCCCccEEec
Q psy14766 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN-LLSTVPSLIYIPYLKSINLAHNP-IHQISSYSFQSTPGIRYIDM 157 (207)
Q Consensus 80 ~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L 157 (207)
++|+.|++++|......|..++++++|+.|+++++ .+..+|....+++|+.|++++|. +..++. ...+|+.|++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~----~~~nL~~L~L 853 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD----ISTNISDLNL 853 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc----cccccCEeEC
Confidence 46777777777544334667888888888888875 46677765556777788887764 333222 1356778888
Q ss_pred CCCceeeeccccCCCCCCccEEEeCCC-CCCCCCCchhhhhcccccC
Q psy14766 158 SNCQIHTIYSEAFYGSDQIRRPTITGQ-WKPRQNEDSDAQLAKGRAH 203 (207)
Q Consensus 158 ~~n~i~~~~~~~~~~l~~L~~l~l~~n-~l~~~~~~~~~~l~~~~~~ 203 (207)
++|.++.+|. .+..+++|+.|++++| .+.. .+.....++.++.+
T Consensus 854 s~n~i~~iP~-si~~l~~L~~L~L~~C~~L~~-l~~~~~~L~~L~~L 898 (1153)
T PLN03210 854 SRTGIEEVPW-WIEKFSNLSFLDMNGCNNLQR-VSLNISKLKHLETV 898 (1153)
T ss_pred CCCCCccChH-HHhcCCCCCEEECCCCCCcCc-cCcccccccCCCee
Confidence 8888877764 3667777888888774 4443 33333444444333
No 28
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.93 E-value=1.4e-08 Score=93.02 Aligned_cols=50 Identities=12% Similarity=0.233 Sum_probs=24.0
Q ss_pred eEEecCCCCcccCCCCC-CCceEEEeecCCccccchhhhhhcCCCcceEEEecC
Q psy14766 37 TVECIDRNFYTIPEGID-LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK 89 (207)
Q Consensus 37 ~~~c~~~~l~~~p~~~~-~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~ 89 (207)
.+...+..++.+|..+. .+++.|+++++.+..++.... .+++|+.+++++
T Consensus 593 ~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~---~l~~Lk~L~Ls~ 643 (1153)
T PLN03210 593 LLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVH---SLTGLRNIDLRG 643 (1153)
T ss_pred EEEecCCCCCCCCCcCCccCCcEEECcCccccccccccc---cCCCCCEEECCC
Confidence 34444455555555442 355555555555554443322 344444444443
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.93 E-value=9.2e-10 Score=89.85 Aligned_cols=129 Identities=25% Similarity=0.361 Sum_probs=82.7
Q ss_pred CeeEEecCCCCcccC--CCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCc---------------
Q psy14766 35 KRTVECIDRNFYTIP--EGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD--------------- 97 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p--~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------------- 97 (207)
.+.+++++..+..+| ...++.++.|++++|.+..+++... ..++++.+++++|++..+++
T Consensus 142 L~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~---~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 142 LKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS---NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN 218 (394)
T ss_pred cccccccccchhhhhhhhhccccccccccCCchhhhhhhhhh---hhhhhhheeccCCccccCchhhhhhhhhhhhhhcC
Confidence 455666666666663 2334566666666666666665543 24556666666666655543
Q ss_pred -------hhhcCCCCCCEEEcCCCCCCCcCCccc-ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccc
Q psy14766 98 -------RAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168 (207)
Q Consensus 98 -------~~f~~l~~L~~L~l~~n~l~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 168 (207)
..+.++.++..+.+.+|++..++.... ++.++.|++++|.++.+.. +....+++.+++++|.+..+++.
T Consensus 219 N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 219 NSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred CcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 233334444444445554444333333 6679999999999999887 78889999999999999887654
No 30
>KOG1259|consensus
Probab=98.92 E-value=9.9e-11 Score=89.55 Aligned_cols=128 Identities=18% Similarity=0.194 Sum_probs=106.6
Q ss_pred CeeEEecCCCCcccCCCC--CCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcC
Q psy14766 35 KRTVECIDRNFYTIPEGI--DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~--~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~ 112 (207)
.+.++.+++.++++-... .+.++.|++|+|.+..+..-. -+++|+.|++++|.++.+. +.-..+.++++|.++
T Consensus 286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa----~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLA----ELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhccccccchhhhhhhhhhccceeEEeccccceeeehhhh----hcccceEeecccchhHhhh-hhHhhhcCEeeeehh
Confidence 367888888888876644 368999999999999887744 4799999999999999985 355578899999999
Q ss_pred CCCCCCcCCcccccccceeeccCCccccccc-cccCCCCCccEEecCCCceeeecc
Q psy14766 113 DNLLSTVPSLIYIPYLKSINLAHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTIYS 167 (207)
Q Consensus 113 ~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~ 167 (207)
.|.+..+...-.+-+|..||+.+|+|..... ..++.+|.|+++.|.+|.+..++.
T Consensus 361 ~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 361 QNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 9998877765557789999999999987654 458899999999999999998764
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.92 E-value=4.4e-10 Score=88.88 Aligned_cols=108 Identities=15% Similarity=0.212 Sum_probs=51.4
Q ss_pred CcceEEEecCCcceeeC----chhhcCCCCCCEEEcCCCCCCCc-----CCccc-ccccceeeccCCccccccc----cc
Q psy14766 80 TNIQKLYLRKCKLEFVD----DRAFRGVTNMDELDLSDNLLSTV-----PSLIY-IPYLKSINLAHNPIHQISS----YS 145 (207)
Q Consensus 80 ~~L~~L~l~~n~l~~~~----~~~f~~l~~L~~L~l~~n~l~~~-----~~~~~-~~~L~~L~l~~n~i~~~~~----~~ 145 (207)
++|+.+++++|.++... ...+..+.+|+.|++++|.++.- +.... .++|+.|++++|.+..... ..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 45555555555554211 22344445566666665555421 11001 3356666666665543321 22
Q ss_pred cCCCCCccEEecCCCceeeeccccC-----CCCCCccEEEeCCCCCC
Q psy14766 146 FQSTPGIRYIDMSNCQIHTIYSEAF-----YGSDQIRRPTITGQWKP 187 (207)
Q Consensus 146 ~~~l~~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~l~l~~n~l~ 187 (207)
+..+++|++|++++|.+++.....+ ...+.|+.|++++|.++
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 3445566666666666553211111 11245666666666655
No 32
>KOG0532|consensus
Probab=98.89 E-value=3.1e-11 Score=98.94 Aligned_cols=162 Identities=19% Similarity=0.199 Sum_probs=106.0
Q ss_pred eeEEecCCCCcccCCCCC----CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEc
Q psy14766 36 RTVECIDRNFYTIPEGID----LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (207)
Q Consensus 36 ~~~~c~~~~l~~~p~~~~----~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l 111 (207)
..+..+++.++++|.+-. ..+...+++.|.+.++|.++.. +..|..+.++.|.+..+ +....++..|..+|+
T Consensus 53 g~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~---f~~Le~liLy~n~~r~i-p~~i~~L~~lt~l~l 128 (722)
T KOG0532|consen 53 GRLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACA---FVSLESLILYHNCIRTI-PEAICNLEALTFLDL 128 (722)
T ss_pred cccccccchhhcCCCccccccccchhhhhccccccccCchHHHH---HHHHHHHHHHhccceec-chhhhhhhHHHHhhh
Confidence 456677888899887654 3677788999999888877653 56677777777777777 446777777777777
Q ss_pred CCCCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCC----------------
Q psy14766 112 SDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQ---------------- 175 (207)
Q Consensus 112 ~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~---------------- 175 (207)
+.|+++.+|.....-.|+.|-+++|+++.++++ ++....|..+|.+.|++..+++. +.++.+
T Consensus 129 s~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~nei~slpsq-l~~l~slr~l~vrRn~l~~lp~ 206 (722)
T KOG0532|consen 129 SSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKNEIQSLPSQ-LGYLTSLRDLNVRRNHLEDLPE 206 (722)
T ss_pred ccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhhhhhhchHH-hhhHHHHHHHHHhhhhhhhCCH
Confidence 777777777766644566777777777766654 44556666666666666555433 222333
Q ss_pred ------ccEEEeCCCCCCCCCCchhhhhcccccCc
Q psy14766 176 ------IRRPTITGQWKPRQNEDSDAQLAKGRAHD 204 (207)
Q Consensus 176 ------L~~l~l~~n~l~~~~~~~~~~l~~~~~~~ 204 (207)
|..|+++.|+++.. |-.|-.+..++.++
T Consensus 207 El~~LpLi~lDfScNkis~i-Pv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 207 ELCSLPLIRLDFSCNKISYL-PVDFRKMRHLQVLQ 240 (722)
T ss_pred HHhCCceeeeecccCceeec-chhhhhhhhheeee
Confidence 55666677766643 44454554555443
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.89 E-value=4.8e-10 Score=88.69 Aligned_cols=14 Identities=7% Similarity=0.076 Sum_probs=6.8
Q ss_pred CCccEEEeCCCCCC
Q psy14766 174 DQIRRPTITGQWKP 187 (207)
Q Consensus 174 ~~L~~l~l~~n~l~ 187 (207)
++|+.+++++|.++
T Consensus 278 ~~L~~l~l~~N~l~ 291 (319)
T cd00116 278 ESLLELDLRGNKFG 291 (319)
T ss_pred CCccEEECCCCCCc
Confidence 44445555555444
No 34
>PLN03150 hypothetical protein; Provisional
Probab=98.84 E-value=8.9e-09 Score=88.62 Aligned_cols=109 Identities=16% Similarity=0.141 Sum_probs=89.4
Q ss_pred cceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCC-CcCCccc-ccccceeeccCCccccccccccCCCCCccEEecC
Q psy14766 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS-TVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMS 158 (207)
Q Consensus 81 ~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 158 (207)
.++.|++++|.+....+..+..+++|+.|++++|.+. .+|.... +++|+.|++++|++++..++.++.+++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788899999998888889999999999999999987 6676555 8899999999999998878888999999999999
Q ss_pred CCceeeeccccCCC-CCCccEEEeCCCCCCCC
Q psy14766 159 NCQIHTIYSEAFYG-SDQIRRPTITGQWKPRQ 189 (207)
Q Consensus 159 ~n~i~~~~~~~~~~-l~~L~~l~l~~n~l~~~ 189 (207)
+|++++..+..+.. ..++..+++.+|...+.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccC
Confidence 99998665554544 34567888888865543
No 35
>KOG1859|consensus
Probab=98.77 E-value=7.1e-11 Score=99.43 Aligned_cols=128 Identities=20% Similarity=0.242 Sum_probs=99.3
Q ss_pred CceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc-ccccceeec
Q psy14766 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINL 133 (207)
Q Consensus 55 ~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~-~~~L~~L~l 133 (207)
.+...++++|.+..+....- -++.++.|++++|+++..+ .+..++.|++||+++|.++.+|.... ..+|+.|.+
T Consensus 165 ~L~~a~fsyN~L~~mD~SLq---ll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQ---LLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHH---HHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeee
Confidence 45556777777775554432 3578899999999998875 78889999999999999998887555 456889999
Q ss_pred cCCccccccccccCCCCCccEEecCCCceeeecc-ccCCCCCCccEEEeCCCCCCCC
Q psy14766 134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS-EAFYGSDQIRRPTITGQWKPRQ 189 (207)
Q Consensus 134 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~l~l~~n~l~~~ 189 (207)
.+|.++.+.. +.++.+|+.||++.|-|.+... ..+..+..|+.|.|.||++.+-
T Consensus 240 rnN~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 240 RNNALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred cccHHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 9998888765 6778899999999998887643 3345667788999999998854
No 36
>KOG3207|consensus
Probab=98.66 E-value=1.1e-08 Score=81.72 Aligned_cols=110 Identities=21% Similarity=0.328 Sum_probs=52.4
Q ss_pred CCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc---ccccceeeccCCccccccccc------cCC
Q psy14766 78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY---IPYLKSINLAHNPIHQISSYS------FQS 148 (207)
Q Consensus 78 ~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~---~~~L~~L~l~~n~i~~~~~~~------~~~ 148 (207)
.+++++.|++..|..-.+.......+..|+.|||++|.+-..+.... ++.|..|+++.+++..+.... ...
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT 299 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence 34555555555553222222233344455566666655554443222 555555566555555442211 123
Q ss_pred CCCccEEecCCCceeeecc-ccCCCCCCccEEEeCCCCCC
Q psy14766 149 TPGIRYIDMSNCQIHTIYS-EAFYGSDQIRRPTITGQWKP 187 (207)
Q Consensus 149 l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~l~l~~n~l~ 187 (207)
.++|++|++..|+|++++. .-+..+++|+.+.+..|.++
T Consensus 300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 4556666666666655432 22333445555555555554
No 37
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.64 E-value=3.5e-07 Score=62.69 Aligned_cols=122 Identities=16% Similarity=0.353 Sum_probs=72.8
Q ss_pred ccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccc
Q psy14766 68 VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYS 145 (207)
Q Consensus 68 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~ 145 (207)
.++...|. +..+|+.+.+.. .+..+...+|.++++|+.+.+..+ +..++..++ +..++.+.+.. .+..++...
T Consensus 2 ~i~~~~F~--~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~ 76 (129)
T PF13306_consen 2 SIGNNAFY--NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNA 76 (129)
T ss_dssp EE-TTTTT--T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTT
T ss_pred EECHHHHh--CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccc
Confidence 34556666 677888888875 678888888988888999988764 778888777 55788888865 666677777
Q ss_pred cCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCchhhhh
Q psy14766 146 FQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQL 197 (207)
Q Consensus 146 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l 197 (207)
|..+++++.+++..+ +..+....+.+. +++.+.+.+ .+.......|..-
T Consensus 77 F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~ 125 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNC 125 (129)
T ss_dssp TTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG--
T ss_pred ccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccc
Confidence 888889999998765 778888888887 888888776 4444445555443
No 38
>KOG0531|consensus
Probab=98.52 E-value=1.7e-08 Score=82.95 Aligned_cols=108 Identities=24% Similarity=0.335 Sum_probs=68.9
Q ss_pred CCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEec
Q psy14766 78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDM 157 (207)
Q Consensus 78 ~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 157 (207)
.+.++..+++.+|++..+.. .+..+++|+.|++++|.++.+.....++.|+.|++.+|.|+.+.. +..++.|+.+++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l 169 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG--LESLKSLKLLDL 169 (414)
T ss_pred cccceeeeeccccchhhccc-chhhhhcchheeccccccccccchhhccchhhheeccCcchhccC--CccchhhhcccC
Confidence 35666777777777766632 255566777777777777666665555557777777777766654 455667777777
Q ss_pred CCCceeeecc-ccCCCCCCccEEEeCCCCCCCC
Q psy14766 158 SNCQIHTIYS-EAFYGSDQIRRPTITGQWKPRQ 189 (207)
Q Consensus 158 ~~n~i~~~~~-~~~~~l~~L~~l~l~~n~l~~~ 189 (207)
++|.++.+.. . ...+.+++.+.+.+|.+...
T Consensus 170 ~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 170 SYNRIVDIENDE-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred Ccchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence 7777766654 2 34556666666666666543
No 39
>KOG4579|consensus
Probab=98.52 E-value=1.1e-09 Score=74.63 Aligned_cols=88 Identities=19% Similarity=0.256 Sum_probs=44.6
Q ss_pred CcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc-ccccceeeccCCccccccccccCCCCCccEEecC
Q psy14766 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMS 158 (207)
Q Consensus 80 ~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 158 (207)
..|+.+++++|.+...++..-..++.+..+++++|.++.+|...- ++.|+.+++..|.+...+...+ .+.++..|+..
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~-~L~~l~~Lds~ 131 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIA-PLIKLDMLDSP 131 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHH-HHHhHHHhcCC
Confidence 344555555555555544333334445555555555555555432 5555555555555555443322 25555555555
Q ss_pred CCceeeeccc
Q psy14766 159 NCQIHTIYSE 168 (207)
Q Consensus 159 ~n~i~~~~~~ 168 (207)
+|.+..++-.
T Consensus 132 ~na~~eid~d 141 (177)
T KOG4579|consen 132 ENARAEIDVD 141 (177)
T ss_pred CCccccCcHH
Confidence 5555555533
No 40
>KOG4579|consensus
Probab=98.50 E-value=5.5e-09 Score=71.24 Aligned_cols=133 Identities=16% Similarity=0.221 Sum_probs=87.1
Q ss_pred EeeecCCCeeEEecCCCCcccCCCC---C--CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcC
Q psy14766 28 SCKWKAGKRTVECIDRNFYTIPEGI---D--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102 (207)
Q Consensus 28 ~c~~~~~~~~~~c~~~~l~~~p~~~---~--~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~ 102 (207)
+|++......++.+...+-++++.. . ..++..++++|.+.++|+.... .++.++.+++.+|.++.++. .+..
T Consensus 22 rcedakE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~--kf~t~t~lNl~~neisdvPe-E~Aa 98 (177)
T KOG4579|consen 22 RCEDAKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTI--KFPTATTLNLANNEISDVPE-ELAA 98 (177)
T ss_pred hhHHHHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhh--ccchhhhhhcchhhhhhchH-HHhh
Confidence 4555444555555555555555432 1 2566678888888888877766 56778888888888888854 4888
Q ss_pred CCCCCEEEcCCCCCCCcCCccc-ccccceeeccCCccccccccccCCCCCccEEecCCCceee
Q psy14766 103 VTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT 164 (207)
Q Consensus 103 l~~L~~L~l~~n~l~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 164 (207)
++.|+.++++.|.+...|...+ +.++-.|+..+|.+..++.+.+ --......++.++.+.+
T Consensus 99 m~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~-~s~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 99 MPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLF-YSSLPALIKLGNEPLGD 160 (177)
T ss_pred hHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHHHh-ccccHHHHHhcCCcccc
Confidence 8888888888888876666555 7777788888887777765522 11223333444444443
No 41
>KOG1644|consensus
Probab=98.49 E-value=1.3e-07 Score=68.55 Aligned_cols=123 Identities=18% Similarity=0.300 Sum_probs=80.7
Q ss_pred ceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc--ccccceeec
Q psy14766 56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL 133 (207)
Q Consensus 56 l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l 133 (207)
-+.+++.+..+..+..-.. ...+...+++++|.+..++ .|..++.|.+|.+++|+++.+.+... .++|+.|.+
T Consensus 21 e~e~~LR~lkip~ienlg~---~~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGA---TLDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLIL 95 (233)
T ss_pred ccccccccccccchhhccc---cccccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEe
Confidence 3455666666654433111 2456777788888777764 57777788888888888887766544 677888888
Q ss_pred cCCccccccc-cccCCCCCccEEecCCCceeeecc---ccCCCCCCccEEEeCC
Q psy14766 134 AHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTIYS---EAFYGSDQIRRPTITG 183 (207)
Q Consensus 134 ~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~l~l~~ 183 (207)
.+|+|..+.+ ..+..+|.|++|.+-+|+++.-.. ..+..+++|+.|+.+.
T Consensus 96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 8887766543 235667788888887777765432 3455677777777544
No 42
>KOG3207|consensus
Probab=98.48 E-value=2e-08 Score=80.29 Aligned_cols=109 Identities=17% Similarity=0.285 Sum_probs=60.7
Q ss_pred CcceEEEecCCcceeeCc-hhhcCCCCCCEEEcCCCC-CCCcCCccc-ccccceeeccCCccccccc-cccCCCCCccEE
Q psy14766 80 TNIQKLYLRKCKLEFVDD-RAFRGVTNMDELDLSDNL-LSTVPSLIY-IPYLKSINLAHNPIHQISS-YSFQSTPGIRYI 155 (207)
Q Consensus 80 ~~L~~L~l~~n~l~~~~~-~~f~~l~~L~~L~l~~n~-l~~~~~~~~-~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L 155 (207)
++++.|.++.|++++.+. .....+++|+.|++..|. +..-..... +..|+.|+|++|++...+. ...+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 344444444444443221 123344566666666653 111111111 5667778888877666542 235567778888
Q ss_pred ecCCCceeeecc-cc-----CCCCCCccEEEeCCCCCCC
Q psy14766 156 DMSNCQIHTIYS-EA-----FYGSDQIRRPTITGQWKPR 188 (207)
Q Consensus 156 ~L~~n~i~~~~~-~~-----~~~l~~L~~l~l~~n~l~~ 188 (207)
+++.+.+.++.- .+ ....++|++|+++.|++..
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence 888887776531 11 2345678888888888853
No 43
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.47 E-value=6e-07 Score=61.48 Aligned_cols=115 Identities=19% Similarity=0.408 Sum_probs=70.9
Q ss_pred CceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc--ccccceee
Q psy14766 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSIN 132 (207)
Q Consensus 55 ~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~ 132 (207)
+++.+.+.. .+..+....|. ++.+++.+.+..+ +..+...+|.+..+++.+.+.. .+..++...+ +.+++.+.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~--~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFS--NCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp T--EEEETS-T--EE-TTTTT--T-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCEEEECC-CeeEeChhhcc--ccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 688888874 68888889888 7888999999885 8888888999998899999965 6667777777 78999999
Q ss_pred ccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCcc
Q psy14766 133 LAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIR 177 (207)
Q Consensus 133 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 177 (207)
+..+ +..+....|.++ +++.+.+.. .+..++..+|.++++|+
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 9775 777888888887 899998875 77777778888877663
No 44
>KOG1859|consensus
Probab=98.42 E-value=4.7e-09 Score=88.76 Aligned_cols=108 Identities=15% Similarity=0.278 Sum_probs=90.5
Q ss_pred CCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecC
Q psy14766 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMS 158 (207)
Q Consensus 79 ~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 158 (207)
+..|...++++|.+..+ +.++.-++.++.|++++|.++++.....+++|++||++.|.++.++.-...++. |..|.++
T Consensus 163 Wn~L~~a~fsyN~L~~m-D~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLM-DESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hhhHhhhhcchhhHHhH-HHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 45577778899998888 468888999999999999999888443499999999999999998774444555 9999999
Q ss_pred CCceeeeccccCCCCCCccEEEeCCCCCCCCC
Q psy14766 159 NCQIHTIYSEAFYGSDQIRRPTITGQWKPRQN 190 (207)
Q Consensus 159 ~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~ 190 (207)
||.++.+. .+.++++|+.|++++|-+.+..
T Consensus 241 nN~l~tL~--gie~LksL~~LDlsyNll~~hs 270 (1096)
T KOG1859|consen 241 NNALTTLR--GIENLKSLYGLDLSYNLLSEHS 270 (1096)
T ss_pred ccHHHhhh--hHHhhhhhhccchhHhhhhcch
Confidence 99999884 4788999999999999888653
No 45
>KOG1644|consensus
Probab=98.42 E-value=4.5e-07 Score=65.85 Aligned_cols=123 Identities=20% Similarity=0.299 Sum_probs=89.1
Q ss_pred eeEEecCCCCcccCC-CC-CCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCC
Q psy14766 36 RTVECIDRNFYTIPE-GI-DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113 (207)
Q Consensus 36 ~~~~c~~~~l~~~p~-~~-~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~ 113 (207)
+.++.++.++..+-. +. ..+...+++++|.+..++.-. .++.|.+|.+.+|.|+.+.+.--..+++|..|.+.+
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp----~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLP----HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhcccCC----CccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 455666665555544 11 136778899999888755433 578899999999999999886666678899999999
Q ss_pred CCCCCcCCccc---ccccceeeccCCccccccc---cccCCCCCccEEecCCCce
Q psy14766 114 NLLSTVPSLIY---IPYLKSINLAHNPIHQISS---YSFQSTPGIRYIDMSNCQI 162 (207)
Q Consensus 114 n~l~~~~~~~~---~~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~L~~n~i 162 (207)
|++..+.+... ++.|+.|.+-+|++..-.. -.+..+|+|++||++.-.-
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 99886655433 8899999999998876433 2345678999999776433
No 46
>KOG4658|consensus
Probab=98.41 E-value=4.2e-07 Score=80.73 Aligned_cols=136 Identities=19% Similarity=0.255 Sum_probs=77.9
Q ss_pred CCcccCCCCC-CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCc--ceeeCchhhcCCCCCCEEEcCCCC-CCCc
Q psy14766 44 NFYTIPEGID-LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK--LEFVDDRAFRGVTNMDELDLSDNL-LSTV 119 (207)
Q Consensus 44 ~l~~~p~~~~-~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~~~~~f~~l~~L~~L~l~~n~-l~~~ 119 (207)
++.++|.... ...+.+.+.+|.+..++... ..++++.|-+.+|. +..+..+.|..++.|+.||+++|. +.++
T Consensus 512 ~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~----~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L 587 (889)
T KOG4658|consen 512 GLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS----ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL 587 (889)
T ss_pred CccccccccchhheeEEEEeccchhhccCCC----CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC
Confidence 3444444332 35556666666655544443 23456666666664 555555556666666666666554 4466
Q ss_pred CCccc-ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCC
Q psy14766 120 PSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQ 184 (207)
Q Consensus 120 ~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n 184 (207)
|.... +-+|++|++++..+..+|.. ++++..|.+||+..+.-....++....+++|++|.+...
T Consensus 588 P~~I~~Li~LryL~L~~t~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 588 PSSIGELVHLRYLDLSDTGISHLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ChHHhhhhhhhcccccCCCccccchH-HHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 66555 66666666666666665543 566666666666665544444454555666666666543
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.37 E-value=4.8e-07 Score=49.87 Aligned_cols=38 Identities=24% Similarity=0.510 Sum_probs=18.6
Q ss_pred ccceeeccCCccccccccccCCCCCccEEecCCCceeee
Q psy14766 127 YLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165 (207)
Q Consensus 127 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~ 165 (207)
+|++|++++|+|+.+++ .++.+++|++|++++|+|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCC
Confidence 34555555555555443 245555555555555555544
No 48
>KOG0531|consensus
Probab=98.34 E-value=8.6e-08 Score=78.85 Aligned_cols=106 Identities=26% Similarity=0.366 Sum_probs=66.9
Q ss_pred CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCcccccccceeec
Q psy14766 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINL 133 (207)
Q Consensus 54 ~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l 133 (207)
.+++.+++.+|.|.++.... . .+++|++|++++|.|+.+. .+..++.|+.|++++|.++.+.....+..|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l-~--~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLL-S--SLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhhcccch-h--hhhcchheecccccccccc--chhhccchhhheeccCcchhccCCccchhhhcccC
Confidence 46677777777777666521 1 3567777777777777764 45556667777777777766665444666777777
Q ss_pred cCCccccccc-cccCCCCCccEEecCCCceeee
Q psy14766 134 AHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTI 165 (207)
Q Consensus 134 ~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~ 165 (207)
++|.+..+.. . ...+.+++.+++.+|.+..+
T Consensus 170 ~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 170 SYNRIVDIENDE-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred Ccchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence 7777666655 2 24555666666666655544
No 49
>KOG1909|consensus
Probab=98.29 E-value=2.1e-07 Score=72.55 Aligned_cols=134 Identities=17% Similarity=0.222 Sum_probs=85.3
Q ss_pred CceEEEeecCCccccchhhhhhc--CCCcceEEEecCCcceeeCchhhcC-------------CCCCCEEEcCCCCCCCc
Q psy14766 55 DTQVLDLSSNNINVLQKEIFLQM--GITNIQKLYLRKCKLEFVDDRAFRG-------------VTNMDELDLSDNLLSTV 119 (207)
Q Consensus 55 ~l~~L~ls~n~i~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~f~~-------------l~~L~~L~l~~n~l~~~ 119 (207)
.++.+++|.|-+..-....+..+ .+.+|++|++.+|.+.....+.+++ -+.|+.+..++|++..-
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 78888888888764333322210 4677888888888877665444332 25678888888887655
Q ss_pred CCccc------ccccceeeccCCccccccc----cccCCCCCccEEecCCCceee----eccccCCCCCCccEEEeCCCC
Q psy14766 120 PSLIY------IPYLKSINLAHNPIHQISS----YSFQSTPGIRYIDMSNCQIHT----IYSEAFYGSDQIRRPTITGQW 185 (207)
Q Consensus 120 ~~~~~------~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~l~l~~n~ 185 (207)
+.... .+.|+.+.+..|.|..-.. ..+..++.|+.|||+.|-++. ...+.+..+++|+.++++++.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 54332 5567777777776654322 345667777777777777653 123455666677777777776
Q ss_pred CCC
Q psy14766 186 KPR 188 (207)
Q Consensus 186 l~~ 188 (207)
+..
T Consensus 253 l~~ 255 (382)
T KOG1909|consen 253 LEN 255 (382)
T ss_pred ccc
Confidence 654
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.29 E-value=6.1e-07 Score=49.47 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=32.7
Q ss_pred CCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCC
Q psy14766 150 PGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPR 188 (207)
Q Consensus 150 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~ 188 (207)
++|++|++++|+|+++++. ++++++|+.|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCC
Confidence 5799999999999999864 8899999999999999984
No 51
>KOG4658|consensus
Probab=98.12 E-value=3.7e-06 Score=74.83 Aligned_cols=143 Identities=16% Similarity=0.205 Sum_probs=107.3
Q ss_pred eeEEecCCCCcccCCCCC-CCceEEEeecCC--ccccchhhhhhcCCCcceEEEecCCc-ceeeCchhhcCCCCCCEEEc
Q psy14766 36 RTVECIDRNFYTIPEGID-LDTQVLDLSSNN--INVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRAFRGVTNMDELDL 111 (207)
Q Consensus 36 ~~~~c~~~~l~~~p~~~~-~~l~~L~ls~n~--i~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~f~~l~~L~~L~l 111 (207)
.++...+..+..++.... +.+++|-+.+|. +..++.+.|. .++.|+.|++++|. +..+ |...+.+.+|+.|++
T Consensus 526 rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~--~m~~LrVLDLs~~~~l~~L-P~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFR--SLPLLRVLDLSGNSSLSKL-PSSIGELVHLRYLDL 602 (889)
T ss_pred eEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHh--hCcceEEEECCCCCccCcC-ChHHhhhhhhhcccc
Confidence 445555566777776443 479999999996 7888888887 79999999999765 4555 789999999999999
Q ss_pred CCCCCCCcCCccc-ccccceeeccCCccccccccccCCCCCccEEecCCCce--eeeccccCCCCCCccEEEe
Q psy14766 112 SDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI--HTIYSEAFYGSDQIRRPTI 181 (207)
Q Consensus 112 ~~n~l~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~l~l 181 (207)
++..+..+|.+.. +..|.+|++..+..-...++....+.+|++|.+..... ....-+.+..+.+|+.+..
T Consensus 603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 9999999999888 89999999998875555566666799999999866542 2222222344555555444
No 52
>KOG1909|consensus
Probab=98.07 E-value=1.4e-06 Score=68.12 Aligned_cols=134 Identities=14% Similarity=0.247 Sum_probs=98.0
Q ss_pred CCceEEEeecCCccccchhhhhhc--CCCcceEEEecCCcceeeC----chhhcCCCCCCEEEcCCCCCCCcCCccc---
Q psy14766 54 LDTQVLDLSSNNINVLQKEIFLQM--GITNIQKLYLRKCKLEFVD----DRAFRGVTNMDELDLSDNLLSTVPSLIY--- 124 (207)
Q Consensus 54 ~~l~~L~ls~n~i~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~----~~~f~~l~~L~~L~l~~n~l~~~~~~~~--- 124 (207)
+.++++....|.+..-+...++.. ..+.|+.+.++.|.|..-. ..+|..+++|+.||+.+|.++.-.....
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 478999999998876554433210 4678999999998876433 3678889999999999998875433221
Q ss_pred ---ccccceeeccCCcccccccccc-----CCCCCccEEecCCCceee----eccccCCCCCCccEEEeCCCCCC
Q psy14766 125 ---IPYLKSINLAHNPIHQISSYSF-----QSTPGIRYIDMSNCQIHT----IYSEAFYGSDQIRRPTITGQWKP 187 (207)
Q Consensus 125 ---~~~L~~L~l~~n~i~~~~~~~~-----~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~l~l~~n~l~ 187 (207)
+++|+.++++++.+..-....+ ...++|+.+.+.+|.|+. +...++...+.|..|+|++|.+.
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 6789999999998776543222 236889999999999874 22344556788999999999995
No 53
>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....
Probab=97.96 E-value=9.1e-06 Score=40.02 Aligned_cols=28 Identities=32% Similarity=0.892 Sum_probs=22.8
Q ss_pred CCCCCCEeeecCCCeeEEecCCCCcccCCCCC
Q psy14766 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGID 53 (207)
Q Consensus 22 ~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~ 53 (207)
.||..|.|. ...|+|++++|+++|..++
T Consensus 1 ~CP~~C~C~----~~~V~C~~~~L~~vP~~lP 28 (28)
T PF01462_consen 1 ACPRPCTCS----GLTVDCSGRGLTAVPSDLP 28 (28)
T ss_dssp SSETTSEEE----TTEEEETTSS-SSS-STS-
T ss_pred CcCCCCEec----CCEeECCCCCCCccCCCCc
Confidence 599999999 6899999999999998764
No 54
>smart00013 LRRNT Leucine rich repeat N-terminal domain.
Probab=97.93 E-value=1.6e-05 Score=40.87 Aligned_cols=31 Identities=32% Similarity=0.824 Sum_probs=27.4
Q ss_pred CCCCCCEeeecCCCeeEEecCCCCcccCCCCCCCc
Q psy14766 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDT 56 (207)
Q Consensus 22 ~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l 56 (207)
.||..|.|. ...++|++++|+++|.+++.+.
T Consensus 1 ~CP~~C~C~----~~~V~C~~~~L~~vP~~iP~~t 31 (33)
T smart00013 1 ACPAPCNCS----GTAVDCSGRGLTEVPLDLPPDT 31 (33)
T ss_pred CcCCCCEEC----CCEeEeCCCCcCccCCCCCccc
Confidence 599999998 5789999999999999887654
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.89 E-value=0.00014 Score=59.18 Aligned_cols=131 Identities=11% Similarity=0.201 Sum_probs=73.6
Q ss_pred CeeEEecCCCCcccCCCCCCCceEEEeecC-CccccchhhhhhcCCCcceEEEecCC-cceeeCchhhcCCCCCCEEEcC
Q psy14766 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSN-NINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDDRAFRGVTNMDELDLS 112 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n-~i~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~f~~l~~L~~L~l~ 112 (207)
.+.++.+++.++.+| .+|.+++.|.++++ .++.+|. .+ ..+|+.|.+++| .+..++ .+|+.|+++
T Consensus 54 l~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~-~L----P~nLe~L~Ls~Cs~L~sLP-------~sLe~L~L~ 120 (426)
T PRK15386 54 SGRLYIKDCDIESLP-VLPNELTEITIENCNNLTTLPG-SI----PEGLEKLTVCHCPEISGLP-------ESVRSLEIK 120 (426)
T ss_pred CCEEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCCc-hh----hhhhhheEccCcccccccc-------cccceEEeC
Confidence 467888888899999 57889999999884 4455553 22 257899999887 565553 246777777
Q ss_pred CCCCCCcCCcccccccceeeccCCc-cccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCC
Q psy14766 113 DNLLSTVPSLIYIPYLKSINLAHNP-IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQ 184 (207)
Q Consensus 113 ~n~l~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n 184 (207)
.+....++. ..++|+.|.+..++ ....... -.-.++|++|++++|.....|.. +. .+|+.|.++.+
T Consensus 121 ~n~~~~L~~--LPssLk~L~I~~~n~~~~~~lp-~~LPsSLk~L~Is~c~~i~LP~~-LP--~SLk~L~ls~n 187 (426)
T PRK15386 121 GSATDSIKN--VPNGLTSLSINSYNPENQARID-NLISPSLKTLSLTGCSNIILPEK-LP--ESLQSITLHIE 187 (426)
T ss_pred CCCCccccc--CcchHhheeccccccccccccc-cccCCcccEEEecCCCcccCccc-cc--ccCcEEEeccc
Confidence 655433222 12345555553322 1110000 00124566666666665443322 21 34556665544
No 56
>KOG3665|consensus
Probab=97.74 E-value=2.5e-05 Score=67.93 Aligned_cols=132 Identities=15% Similarity=0.166 Sum_probs=83.2
Q ss_pred CceEEEeecCCccc--cchhhhhhcCCCcceEEEecCCcceeeC-chhhcCCCCCCEEEcCCCCCCCcCCccccccccee
Q psy14766 55 DTQVLDLSSNNINV--LQKEIFLQMGITNIQKLYLRKCKLEFVD-DRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSI 131 (207)
Q Consensus 55 ~l~~L~ls~n~i~~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L 131 (207)
+++.|++++.+.-. -+..... .+|+|+.|.+.+-.+..-+ -..+.++++|..||+|+.+++.+.....+.+|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~--~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGT--MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhh--hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 67788887765431 1222222 5788888888886554432 23556778888999998888777333337777777
Q ss_pred eccCCccccccc-cccCCCCCccEEecCCCceeeec------cccCCCCCCccEEEeCCCCCCC
Q psy14766 132 NLAHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTIY------SEAFYGSDQIRRPTITGQWKPR 188 (207)
Q Consensus 132 ~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~------~~~~~~l~~L~~l~l~~n~l~~ 188 (207)
.+.+=.+..... ..+.++++|+.||+|.......+ -++-..++.|+.|+.+++.+..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 775544443211 23557888888888875443322 1333457888888888877663
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.65 E-value=3.5e-05 Score=58.86 Aligned_cols=134 Identities=14% Similarity=0.140 Sum_probs=93.8
Q ss_pred CCceEEEeecCCccccchh----hhhhcCCCcceEEEecCCcceeeCchhhc-------------CCCCCCEEEcCCCCC
Q psy14766 54 LDTQVLDLSSNNINVLQKE----IFLQMGITNIQKLYLRKCKLEFVDDRAFR-------------GVTNMDELDLSDNLL 116 (207)
Q Consensus 54 ~~l~~L~ls~n~i~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~f~-------------~l~~L~~L~l~~n~l 116 (207)
+.++.+++|.|-+..-.+. ..+ ..+.|.+|.+++|.+..+..+.++ .-+.|+.+++.+|++
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is--~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLIS--SSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHh--cCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 4688889999988743322 233 457789999999988777655444 236788999999998
Q ss_pred CCcCCccc------ccccceeeccCCcccccccc-----ccCCCCCccEEecCCCceeee----ccccCCCCCCccEEEe
Q psy14766 117 STVPSLIY------IPYLKSINLAHNPIHQISSY-----SFQSTPGIRYIDMSNCQIHTI----YSEAFYGSDQIRRPTI 181 (207)
Q Consensus 117 ~~~~~~~~------~~~L~~L~l~~n~i~~~~~~-----~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~l~l 181 (207)
..-+.... ...|+.+.+..|.|....-. .+.-+.+|+.||++.|-++-. ...++..++.|+.|.+
T Consensus 170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l 249 (388)
T COG5238 170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL 249 (388)
T ss_pred ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence 76665433 34688888888887654221 234467899999999988632 2345666777899999
Q ss_pred CCCCCCCC
Q psy14766 182 TGQWKPRQ 189 (207)
Q Consensus 182 ~~n~l~~~ 189 (207)
.+|-++..
T Consensus 250 nDClls~~ 257 (388)
T COG5238 250 NDCLLSNE 257 (388)
T ss_pred cchhhccc
Confidence 98877744
No 58
>KOG2739|consensus
Probab=97.59 E-value=2.1e-05 Score=59.36 Aligned_cols=100 Identities=21% Similarity=0.370 Sum_probs=62.2
Q ss_pred CCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCC---CcCCccc-ccccceeeccCCccccccc-cccCCCCCcc
Q psy14766 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS---TVPSLIY-IPYLKSINLAHNPIHQISS-YSFQSTPGIR 153 (207)
Q Consensus 79 ~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~---~~~~~~~-~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~ 153 (207)
+..++.+.+.+..++.+. .|..+++|++|+++.|... .++..+- +++|+++++++|+|..+.. ..+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 455666667776666653 5667788888888888433 3333333 6888888888887764321 1245566777
Q ss_pred EEecCCCceeeecc---ccCCCCCCccEEE
Q psy14766 154 YIDMSNCQIHTIYS---EAFYGSDQIRRPT 180 (207)
Q Consensus 154 ~L~L~~n~i~~~~~---~~~~~l~~L~~l~ 180 (207)
+||+++|..+.... ..|.-+++|.+++
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 88888887766432 3344445555444
No 59
>KOG2739|consensus
Probab=97.47 E-value=8.3e-05 Score=56.19 Aligned_cols=88 Identities=13% Similarity=0.218 Sum_probs=64.0
Q ss_pred CCCCCCEEEcCCCCCCCcCCcccccccceeeccCC--ccccccccccCCCCCccEEecCCCceeeecc-ccCCCCCCccE
Q psy14766 102 GVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHN--PIHQISSYSFQSTPGIRYIDMSNCQIHTIYS-EAFYGSDQIRR 178 (207)
Q Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~ 178 (207)
.+..|+.+.+.+.+++++.....+++|+.|.++.| ++..-.+--...+++|+++++++|+|+.+.. ..+..+++|..
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 44567777777777776666555899999999999 4444333223456999999999999986542 34567788999
Q ss_pred EEeCCCCCCCC
Q psy14766 179 PTITGQWKPRQ 189 (207)
Q Consensus 179 l~l~~n~l~~~ 189 (207)
|++.+|..+..
T Consensus 121 Ldl~n~~~~~l 131 (260)
T KOG2739|consen 121 LDLFNCSVTNL 131 (260)
T ss_pred hhcccCCcccc
Confidence 99999877753
No 60
>KOG2982|consensus
Probab=97.22 E-value=0.00014 Score=56.32 Aligned_cols=36 Identities=33% Similarity=0.559 Sum_probs=16.0
Q ss_pred CCCEEEcCCCCCCCcCCccc----ccccceeeccCCcccc
Q psy14766 105 NMDELDLSDNLLSTVPSLIY----IPYLKSINLAHNPIHQ 140 (207)
Q Consensus 105 ~L~~L~l~~n~l~~~~~~~~----~~~L~~L~l~~n~i~~ 140 (207)
.++.+|+.+|.++....... ++.|+.|+++.|++..
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s 111 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS 111 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC
Confidence 34455555555443222111 4455555555554443
No 61
>KOG2982|consensus
Probab=97.09 E-value=0.00019 Score=55.64 Aligned_cols=133 Identities=20% Similarity=0.291 Sum_probs=82.7
Q ss_pred CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeC-chhhcCCCCCCEEEcCCCCCCCc--CCccc------
Q psy14766 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD-DRAFRGVTNMDELDLSDNLLSTV--PSLIY------ 124 (207)
Q Consensus 54 ~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~f~~l~~L~~L~l~~n~l~~~--~~~~~------ 124 (207)
+.++.|+++.|++.......-. +..+|+.|-+.+..+.... ...+..++.++++.++.|.++.+ .+...
T Consensus 97 P~l~~LNls~N~L~s~I~~lp~--p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~ 174 (418)
T KOG2982|consen 97 PALTTLNLSCNSLSSDIKSLPL--PLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTE 174 (418)
T ss_pred ccceEeeccCCcCCCccccCcc--cccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchh
Confidence 3588888888887643333212 4677888888777765443 33555677777888877754321 11000
Q ss_pred -----------------------ccccceeeccCCccccccc-cccCCCCCccEEecCCCceeeecc-ccCCCCCCccEE
Q psy14766 125 -----------------------IPYLKSINLAHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTIYS-EAFYGSDQIRRP 179 (207)
Q Consensus 125 -----------------------~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~l 179 (207)
.+++..+-+..|++..... +....++.+.-|+|+.|+|.+... ..+.++++|..|
T Consensus 175 v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dl 254 (418)
T KOG2982|consen 175 VLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDL 254 (418)
T ss_pred hhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhhee
Confidence 3344445555555544332 234455667778888888876543 567788888888
Q ss_pred EeCCCCCCC
Q psy14766 180 TITGQWKPR 188 (207)
Q Consensus 180 ~l~~n~l~~ 188 (207)
.+++|++..
T Consensus 255 Rv~~~Pl~d 263 (418)
T KOG2982|consen 255 RVSENPLSD 263 (418)
T ss_pred eccCCcccc
Confidence 888888864
No 62
>KOG3665|consensus
Probab=97.09 E-value=0.0005 Score=60.05 Aligned_cols=107 Identities=11% Similarity=0.228 Sum_probs=79.9
Q ss_pred CCceEEEeecCCccccc-hhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCC--ccc-ccccc
Q psy14766 54 LDTQVLDLSSNNINVLQ-KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIY-IPYLK 129 (207)
Q Consensus 54 ~~l~~L~ls~n~i~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~--~~~-~~~L~ 129 (207)
+.++.|.+++-.+..-. ...+. .+++|..||+|+++++.+ .+.+++.+|+.|.+.+=.+..... ..| +.+|+
T Consensus 148 PsL~sL~i~~~~~~~~dF~~lc~--sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQLCA--SFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred cccceEEecCceecchhHHHHhh--ccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 58999999998876432 33444 789999999999999998 578899999999887655554332 233 89999
Q ss_pred eeeccCCcccccc------ccccCCCCCccEEecCCCceee
Q psy14766 130 SINLAHNPIHQIS------SYSFQSTPGIRYIDMSNCQIHT 164 (207)
Q Consensus 130 ~L~l~~n~i~~~~------~~~~~~l~~L~~L~L~~n~i~~ 164 (207)
.||++........ -+....+|+|+.||.|+..+..
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 9999997544332 1233458999999999887764
No 63
>KOG2120|consensus
Probab=97.08 E-value=6.5e-06 Score=63.46 Aligned_cols=83 Identities=22% Similarity=0.185 Sum_probs=57.4
Q ss_pred CceEEEeecCCccc-cchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCC-CCCCcCCccc---ccccc
Q psy14766 55 DTQVLDLSSNNINV-LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN-LLSTVPSLIY---IPYLK 129 (207)
Q Consensus 55 ~l~~L~ls~n~i~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~---~~~L~ 129 (207)
.++.||+|+..|+. --...+. .+.+|+.|.+.++++..-....++...+|+.++++.. +++....... ++.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs--~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILS--QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHH--HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 57888999888873 2233444 5788899999998887766667777788888888864 3554333222 67777
Q ss_pred eeeccCCccc
Q psy14766 130 SINLAHNPIH 139 (207)
Q Consensus 130 ~L~l~~n~i~ 139 (207)
.|+++++...
T Consensus 264 ~LNlsWc~l~ 273 (419)
T KOG2120|consen 264 ELNLSWCFLF 273 (419)
T ss_pred hcCchHhhcc
Confidence 7888777543
No 64
>KOG2123|consensus
Probab=97.00 E-value=3e-05 Score=59.32 Aligned_cols=100 Identities=24% Similarity=0.311 Sum_probs=72.5
Q ss_pred eeecCCCeeEEecCCCCcccCCCC-CCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCc-hhhcCCCCC
Q psy14766 29 CKWKAGKRTVECIDRNFYTIPEGI-DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD-RAFRGVTNM 106 (207)
Q Consensus 29 c~~~~~~~~~~c~~~~l~~~p~~~-~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~f~~l~~L 106 (207)
|.+-...+.++|.|++|..|.--. .+.+++|.+|-|.|+.+.+-. .+..|++|++..|.|..++. ..+.++++|
T Consensus 15 ~sdl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~----rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 15 CSDLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQ----RCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred hhHHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHH----HHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 444445677899999988876522 357899999999999876654 57889999999999888752 467888999
Q ss_pred CEEEcCCCCCC-CcCCcc----c--ccccceee
Q psy14766 107 DELDLSDNLLS-TVPSLI----Y--IPYLKSIN 132 (207)
Q Consensus 107 ~~L~l~~n~l~-~~~~~~----~--~~~L~~L~ 132 (207)
+.|.|..|..- .-+... . +++|+.||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99988888754 222211 1 66776654
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.98 E-value=0.00071 Score=31.15 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=14.2
Q ss_pred CccEEecCCCceeeeccccCCC
Q psy14766 151 GIRYIDMSNCQIHTIYSEAFYG 172 (207)
Q Consensus 151 ~L~~L~L~~n~i~~~~~~~~~~ 172 (207)
+|++||+++|+++.+|+. |++
T Consensus 1 ~L~~Ldls~n~l~~ip~~-~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS-FSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTT-TTT
T ss_pred CccEEECCCCcCEeCChh-hcC
Confidence 467777777777777655 543
No 66
>KOG2123|consensus
Probab=96.90 E-value=1.8e-05 Score=60.60 Aligned_cols=83 Identities=22% Similarity=0.307 Sum_probs=50.7
Q ss_pred CCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCcccccccceeeccCCccccccc-cccCCCCCccEEec
Q psy14766 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISS-YSFQSTPGIRYIDM 157 (207)
Q Consensus 79 ~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L 157 (207)
+.+.++|++.++.+..|. ....++.|+.|.|+-|.++.+....-+.+|+.|.|-.|.|..+.. .-+.++++|+.|.|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 455666667666666652 455566667777766666665554336666666666666665543 22456666676666
Q ss_pred CCCcee
Q psy14766 158 SNCQIH 163 (207)
Q Consensus 158 ~~n~i~ 163 (207)
..|.=.
T Consensus 96 ~ENPCc 101 (388)
T KOG2123|consen 96 DENPCC 101 (388)
T ss_pred ccCCcc
Confidence 666543
No 67
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.76 E-value=0.011 Score=48.43 Aligned_cols=114 Identities=11% Similarity=0.240 Sum_probs=69.1
Q ss_pred CCceEEEeecCCccccchhhhhhcCCCcceEEEecC-CcceeeCchhhcCCCCCCEEEcCCC-CCCCcCCccccccccee
Q psy14766 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVTNMDELDLSDN-LLSTVPSLIYIPYLKSI 131 (207)
Q Consensus 54 ~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~L~~L 131 (207)
.+++.|+++++.++.+| .+ ..+|+.|.+++ +.++.+ |+.+ ..+|+.|+++++ .+..+|. .|+.|
T Consensus 52 ~~l~~L~Is~c~L~sLP--~L----P~sLtsL~Lsnc~nLtsL-P~~L--P~nLe~L~Ls~Cs~L~sLP~-----sLe~L 117 (426)
T PRK15386 52 RASGRLYIKDCDIESLP--VL----PNELTEITIENCNNLTTL-PGSI--PEGLEKLTVCHCPEISGLPE-----SVRSL 117 (426)
T ss_pred cCCCEEEeCCCCCcccC--CC----CCCCcEEEccCCCCcccC-Cchh--hhhhhheEccCccccccccc-----ccceE
Confidence 36788999999888887 22 24688999877 445444 3333 247889999887 4554444 46677
Q ss_pred eccCCccccccccccCCCCCccEEecCCCc-eeeec-cccCCCCCCccEEEeCCCCCC
Q psy14766 132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQ-IHTIY-SEAFYGSDQIRRPTITGQWKP 187 (207)
Q Consensus 132 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~-~~~~~~l~~L~~l~l~~n~l~ 187 (207)
++..+....+.. -.++|+.|.+.+++ ..... +..+ ..+|+.|++++|...
T Consensus 118 ~L~~n~~~~L~~----LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i 169 (426)
T PRK15386 118 EIKGSATDSIKN----VPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI 169 (426)
T ss_pred EeCCCCCccccc----CcchHhheecccccccccccccccc--CCcccEEEecCCCcc
Confidence 776655433221 12357777775432 21111 1111 247999999988755
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.30 E-value=0.0056 Score=47.13 Aligned_cols=117 Identities=13% Similarity=0.070 Sum_probs=72.2
Q ss_pred CCCcceEEEecCCcceeeCc----hhhcCCCCCCEEEcCCCCCCCcCCcc--------------c-ccccceeeccCCcc
Q psy14766 78 GITNIQKLYLRKCKLEFVDD----RAFRGVTNMDELDLSDNLLSTVPSLI--------------Y-IPYLKSINLAHNPI 138 (207)
Q Consensus 78 ~~~~L~~L~l~~n~l~~~~~----~~f~~l~~L~~L~l~~n~l~~~~~~~--------------~-~~~L~~L~l~~n~i 138 (207)
+++.++.+++|.|.+..-.+ ..++..+.|.+|.+++|++..+...- . -+.|+.+....|++
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 46777777777776654433 24445567777777777776443210 1 35677777777766
Q ss_pred cccccc----ccCCCCCccEEecCCCceeee--c---cccCCCCCCccEEEeCCCCCCCCCCchh
Q psy14766 139 HQISSY----SFQSTPGIRYIDMSNCQIHTI--Y---SEAFYGSDQIRRPTITGQWKPRQNEDSD 194 (207)
Q Consensus 139 ~~~~~~----~~~~l~~L~~L~L~~n~i~~~--~---~~~~~~l~~L~~l~l~~n~l~~~~~~~~ 194 (207)
-..+.. .+....+|+.+.+..|.|+.- . -..+..+++|+.|++++|-++.....++
T Consensus 170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 543321 233345778888888877632 1 1224567889999999998885443333
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.24 E-value=0.0034 Score=28.80 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=9.7
Q ss_pred cceEEEecCCcceeeCc
Q psy14766 81 NIQKLYLRKCKLEFVDD 97 (207)
Q Consensus 81 ~L~~L~l~~n~l~~~~~ 97 (207)
+|++|++++|+++.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPS 17 (22)
T ss_dssp TESEEEETSSEESEEGT
T ss_pred CccEEECCCCcCEeCCh
Confidence 35566666666665543
No 70
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.08 E-value=0.0039 Score=29.82 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=14.7
Q ss_pred CCccEEecCCCceeeeccccCC
Q psy14766 150 PGIRYIDMSNCQIHTIYSEAFY 171 (207)
Q Consensus 150 ~~L~~L~L~~n~i~~~~~~~~~ 171 (207)
++|++|+|++|+|+.+|++.|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 4667777777777777666553
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.08 E-value=0.0039 Score=29.82 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=14.7
Q ss_pred CCccEEecCCCceeeeccccCC
Q psy14766 150 PGIRYIDMSNCQIHTIYSEAFY 171 (207)
Q Consensus 150 ~~L~~L~L~~n~i~~~~~~~~~ 171 (207)
++|++|+|++|+|+.+|++.|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 4667777777777777666553
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.88 E-value=0.0053 Score=26.25 Aligned_cols=15 Identities=27% Similarity=0.640 Sum_probs=6.1
Q ss_pred CccEEecCCCceeee
Q psy14766 151 GIRYIDMSNCQIHTI 165 (207)
Q Consensus 151 ~L~~L~L~~n~i~~~ 165 (207)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555555443
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.25 E-value=0.016 Score=27.59 Aligned_cols=16 Identities=56% Similarity=0.893 Sum_probs=6.5
Q ss_pred CCEEEcCCCCCCCcCC
Q psy14766 106 MDELDLSDNLLSTVPS 121 (207)
Q Consensus 106 L~~L~l~~n~l~~~~~ 121 (207)
|+.|++++|.++.+|.
T Consensus 4 L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 4 LRELDLSNNQLSSLPP 19 (26)
T ss_pred CCEEECCCCcCCcCCH
Confidence 3444444444443333
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.25 E-value=0.016 Score=27.59 Aligned_cols=16 Identities=56% Similarity=0.893 Sum_probs=6.5
Q ss_pred CCEEEcCCCCCCCcCC
Q psy14766 106 MDELDLSDNLLSTVPS 121 (207)
Q Consensus 106 L~~L~l~~n~l~~~~~ 121 (207)
|+.|++++|.++.+|.
T Consensus 4 L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 4 LRELDLSNNQLSSLPP 19 (26)
T ss_pred CCEEECCCCcCCcCCH
Confidence 3444444444443333
No 75
>KOG2120|consensus
Probab=95.06 E-value=0.0014 Score=51.05 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=29.2
Q ss_pred CceEEEeecCCccccchhhhhhcCCCcceEEEecCC-cceeeCc-hhhcCCCCCCEEEcCCCCC
Q psy14766 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDD-RAFRGVTNMDELDLSDNLL 116 (207)
Q Consensus 55 ~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~-~~f~~l~~L~~L~l~~n~l 116 (207)
.++.+.+.++.+..-.....+ .-.+|..++++.+ ++++-.. -.|..++.|+.|+++++.+
T Consensus 211 kLk~lSlEg~~LdD~I~~~iA--kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIA--KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred hhhhccccccccCcHHHHHHh--ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence 455556666665543333333 3455666666553 2332211 1344455555555555543
No 76
>KOG0473|consensus
Probab=94.05 E-value=0.00095 Score=50.09 Aligned_cols=80 Identities=13% Similarity=0.039 Sum_probs=37.8
Q ss_pred CCCEEEcCCCCCCCcCCccc-ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCC
Q psy14766 105 NMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183 (207)
Q Consensus 105 ~L~~L~l~~n~l~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~ 183 (207)
....||++.|++..+..... +..+..++++.|++...+.+ ++....++.+++.+|..+..| .++...++++.+++.+
T Consensus 43 r~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~p-~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQP-KSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhCC-ccccccCCcchhhhcc
Confidence 34445555555444444333 44444555555555544433 334444445555555554444 2344455555555555
Q ss_pred CCC
Q psy14766 184 QWK 186 (207)
Q Consensus 184 n~l 186 (207)
|++
T Consensus 121 ~~~ 123 (326)
T KOG0473|consen 121 TEF 123 (326)
T ss_pred Ccc
Confidence 543
No 77
>KOG0473|consensus
Probab=90.24 E-value=0.0064 Score=45.78 Aligned_cols=84 Identities=18% Similarity=0.155 Sum_probs=52.2
Q ss_pred CCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc-ccccceeeccCCccccccccccCCCCCccEEe
Q psy14766 78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYID 156 (207)
Q Consensus 78 ~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 156 (207)
.....+.|+++.|++... ...|+-++.+..+|++.|.+..+|..+. ...+..+++..|..+..|. .++..+.+++++
T Consensus 40 ~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~-s~~k~~~~k~~e 117 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPK-SQKKEPHPKKNE 117 (326)
T ss_pred ccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCc-cccccCCcchhh
Confidence 345566666666666555 3356666666677777776666666655 5555666666666666544 356666677777
Q ss_pred cCCCcee
Q psy14766 157 MSNCQIH 163 (207)
Q Consensus 157 L~~n~i~ 163 (207)
+..|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 6666543
No 78
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=89.92 E-value=0.31 Score=23.27 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=11.7
Q ss_pred CCccEEecCCCceeeec
Q psy14766 150 PGIRYIDMSNCQIHTIY 166 (207)
Q Consensus 150 ~~L~~L~L~~n~i~~~~ 166 (207)
.+|+.|+++.|.|+.+.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 46777777777776653
No 79
>KOG3864|consensus
Probab=89.56 E-value=0.088 Score=38.81 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=16.0
Q ss_pred CCccEEecCCC-ceeeeccccCCCCCCccEEEeCC
Q psy14766 150 PGIRYIDMSNC-QIHTIYSEAFYGSDQIRRPTITG 183 (207)
Q Consensus 150 ~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~l~l~~ 183 (207)
++|+.|++++| +|++---..+..+++|+.|++.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 44555555543 34443333344445555554443
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.40 E-value=0.21 Score=23.08 Aligned_cols=15 Identities=40% Similarity=0.671 Sum_probs=7.6
Q ss_pred CCccEEecCCCceee
Q psy14766 150 PGIRYIDMSNCQIHT 164 (207)
Q Consensus 150 ~~L~~L~L~~n~i~~ 164 (207)
++|++|++++|+|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 456666666666543
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=88.26 E-value=0.29 Score=23.37 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=12.9
Q ss_pred CCccEEecCCCceeeecc
Q psy14766 150 PGIRYIDMSNCQIHTIYS 167 (207)
Q Consensus 150 ~~L~~L~L~~n~i~~~~~ 167 (207)
++|+.|++++|+++++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357777788888777764
No 82
>KOG3864|consensus
Probab=84.61 E-value=0.11 Score=38.31 Aligned_cols=76 Identities=13% Similarity=0.226 Sum_probs=42.5
Q ss_pred cceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc------ccccceeeccCCc-cccccccccCCCCCcc
Q psy14766 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY------IPYLKSINLAHNP-IHQISSYSFQSTPGIR 153 (207)
Q Consensus 81 ~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~------~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~ 153 (207)
.++.++-++..|....=..+.++.+++.|.+.++. .+.++.. .++|+.|++++|. |+.-.-..+..+++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck--~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK--YFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc--chhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 46666777766666544455555666665554432 2222211 5677788887763 6554444444556666
Q ss_pred EEecC
Q psy14766 154 YIDMS 158 (207)
Q Consensus 154 ~L~L~ 158 (207)
.|.+.
T Consensus 180 ~L~l~ 184 (221)
T KOG3864|consen 180 RLHLY 184 (221)
T ss_pred HHHhc
Confidence 65544
No 83
>KOG3763|consensus
Probab=83.04 E-value=0.66 Score=39.35 Aligned_cols=13 Identities=8% Similarity=0.025 Sum_probs=6.4
Q ss_pred ccEEEeCCCCCCC
Q psy14766 176 IRRPTITGQWKPR 188 (207)
Q Consensus 176 L~~l~l~~n~l~~ 188 (207)
|+.|.+.||++..
T Consensus 272 Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 272 LEELVLEGNPLCT 284 (585)
T ss_pred HHHeeecCCcccc
Confidence 4455555555543
No 84
>KOG1947|consensus
Probab=80.64 E-value=0.45 Score=39.67 Aligned_cols=108 Identities=22% Similarity=0.326 Sum_probs=59.1
Q ss_pred CCcceEEEecCCc-ceeeC-chhhcCCCCCCEEEcCCC--CCCCcC----Cccc-ccccceeeccCCc-cccccccccC-
Q psy14766 79 ITNIQKLYLRKCK-LEFVD-DRAFRGVTNMDELDLSDN--LLSTVP----SLIY-IPYLKSINLAHNP-IHQISSYSFQ- 147 (207)
Q Consensus 79 ~~~L~~L~l~~n~-l~~~~-~~~f~~l~~L~~L~l~~n--~l~~~~----~~~~-~~~L~~L~l~~n~-i~~~~~~~~~- 147 (207)
.+.++.+.+.++. +.... .......+.|+.++++++ .....+ .... +.+|+.+++++.. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4666666666543 33211 234455677888887762 111111 1111 6677778887776 5544332222
Q ss_pred CCCCccEEecCCCc-eeeec-cccCCCCCCccEEEeCCCCC
Q psy14766 148 STPGIRYIDMSNCQ-IHTIY-SEAFYGSDQIRRPTITGQWK 186 (207)
Q Consensus 148 ~l~~L~~L~L~~n~-i~~~~-~~~~~~l~~L~~l~l~~n~l 186 (207)
.+++|+.|.+.++. +++.. ......++.|+.|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 26778888866665 44322 13334567788888887644
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.47 E-value=1.4 Score=21.20 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=7.1
Q ss_pred CccEEecCCCcee
Q psy14766 151 GIRYIDMSNCQIH 163 (207)
Q Consensus 151 ~L~~L~L~~n~i~ 163 (207)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555553
No 86
>KOG3763|consensus
Probab=78.07 E-value=1.2 Score=37.80 Aligned_cols=62 Identities=24% Similarity=0.316 Sum_probs=39.9
Q ss_pred CCCCCCEEEcCCCCCCCcCCccc----ccccceeeccCC--ccccccc-cccCCCCCccEEecCCCceee
Q psy14766 102 GVTNMDELDLSDNLLSTVPSLIY----IPYLKSINLAHN--PIHQISS-YSFQSTPGIRYIDMSNCQIHT 164 (207)
Q Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~----~~~L~~L~l~~n--~i~~~~~-~~~~~l~~L~~L~L~~n~i~~ 164 (207)
+.+.+..+.+++|++..+....- .++|+.|+|++| .+..... +.+++ ..|+.|-+.+|.+++
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCcccc
Confidence 44667778888888776654322 678888888888 3332221 12333 348888888888865
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=62.50 E-value=4.6 Score=41.06 Aligned_cols=31 Identities=35% Similarity=0.494 Sum_probs=21.7
Q ss_pred EcCCCCCCCcCCccc--ccccceeeccCCcccc
Q psy14766 110 DLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQ 140 (207)
Q Consensus 110 ~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~ 140 (207)
||++|+|+.++...| +.+|+.|+|.+|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 467777777777666 6677777777776654
No 88
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=62.26 E-value=15 Score=19.66 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=18.1
Q ss_pred CCCCceEEEeecCCccccchhhhhhcCCCcceEEEec
Q psy14766 52 IDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLR 88 (207)
Q Consensus 52 ~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~ 88 (207)
++.+++.|.+.++--..+....+. +++++|.+.
T Consensus 10 iP~~l~~L~~g~~fn~~i~~~~lP----~sl~~L~fg 42 (44)
T PF05725_consen 10 IPSSLKSLIFGSSFNQPIEPGSLP----NSLKSLSFG 42 (44)
T ss_pred eCCCCeEEEECCccCccCCCCccC----CCceEEEee
Confidence 445677777744444445555443 456666553
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=59.19 E-value=6.2 Score=40.20 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=20.8
Q ss_pred EeecCCccccchhhhhhcCCCcceEEEecCCcc
Q psy14766 60 DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL 92 (207)
Q Consensus 60 ~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l 92 (207)
+|++|.|+.++...|. .+.+|+.|+|++|.+
T Consensus 1 DLSnN~LstLp~g~F~--~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEEGICA--NLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccChHHhc--cCCCceEEEeeCCcc
Confidence 3566777777777776 566777777776654
No 90
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=59.04 E-value=21 Score=19.47 Aligned_cols=23 Identities=30% Similarity=0.699 Sum_probs=14.6
Q ss_pred HHHHHHHHhhhhccCCCCCCEee
Q psy14766 8 SVFLLTLLASVTQASCPLGCSCK 30 (207)
Q Consensus 8 ~~~~~~~~~~~~~~~cp~~c~c~ 30 (207)
++++++++..-+-.-||..|.|.
T Consensus 12 ~~ll~~LigiCwCQcCp~~ccCY 34 (49)
T PF05624_consen 12 ALLLLLLIGICWCQCCPHTCCCY 34 (49)
T ss_pred HHHHHHHHHHHHHhcCccceeEE
Confidence 34444444455667888888876
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=51.70 E-value=11 Score=17.44 Aligned_cols=11 Identities=45% Similarity=1.126 Sum_probs=6.2
Q ss_pred CCccEEecCCC
Q psy14766 150 PGIRYIDMSNC 160 (207)
Q Consensus 150 ~~L~~L~L~~n 160 (207)
++|++|+++++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45566666554
No 92
>KOG1947|consensus
Probab=43.28 E-value=15 Score=30.60 Aligned_cols=11 Identities=27% Similarity=0.591 Sum_probs=4.7
Q ss_pred cccceeeccCC
Q psy14766 126 PYLKSINLAHN 136 (207)
Q Consensus 126 ~~L~~L~l~~n 136 (207)
+.|+.|+++++
T Consensus 295 ~~L~~L~l~~c 305 (482)
T KOG1947|consen 295 PSLRELDLSGC 305 (482)
T ss_pred CcccEEeeecC
Confidence 33444444433
No 93
>PF07771 TSGP1: Tick salivary peptide group 1; InterPro: IPR011694 This entry contains a group of peptides derived from a salivary gland cDNA library of the tick Ixodes scapularis (Black-legged tick) []. Also present are peptides from a related tick species, Ixodes ricinus (Sheep tick). They are characterised by a putative signal peptide, indicative of secretion, and conserved cysteine residues.
Probab=32.59 E-value=26 Score=23.69 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=14.5
Q ss_pred ChhhHHHHHHHHHHHh-hhhccCCCC
Q psy14766 1 MCHKFILSVFLLTLLA-SVTQASCPL 25 (207)
Q Consensus 1 ~~~~~~l~~~~~~~~~-~~~~~~cp~ 25 (207)
|....++++++.+++. ...+-.||+
T Consensus 1 m~~~~~~~vlv~la~~~~~~~~~Cp~ 26 (120)
T PF07771_consen 1 MGLTVVTLVLVSLAFFGSAAAHGCPD 26 (120)
T ss_pred CcceeehhhHHhHHhhhhhhhhcCCC
Confidence 6666666666555333 344567874
No 94
>KOG4308|consensus
Probab=30.49 E-value=2.3 Score=36.02 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=20.9
Q ss_pred CCccEEecCCCceeeec----cccCCCCCCccEEEeCCCCCC
Q psy14766 150 PGIRYIDMSNCQIHTIY----SEAFYGSDQIRRPTITGQWKP 187 (207)
Q Consensus 150 ~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~l~l~~n~l~ 187 (207)
+.++.++++.|.|.+-. .+.+..+++++.+.++.|.+.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 44566666666665432 233444555666666666655
No 95
>KOG4341|consensus
Probab=30.45 E-value=32 Score=28.74 Aligned_cols=36 Identities=14% Similarity=0.285 Sum_probs=16.8
Q ss_pred CCCccEEecCCCcee-eeccccCCCCCCccEEEeCCC
Q psy14766 149 TPGIRYIDMSNCQIH-TIYSEAFYGSDQIRRPTITGQ 184 (207)
Q Consensus 149 l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~l~l~~n 184 (207)
+..++.+.|+++... +...+-+..+++|+.+++-+.
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 344555555554432 222233444555555555553
Done!