Query psy14766
Match_columns 207
No_of_seqs 140 out of 1695
Neff 10.1
Searched_HMMs 29240
Date Fri Aug 16 20:04:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14766.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14766hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v9t_B SLIT homolog 2 protein 100.0 1.4E-29 4.8E-34 189.5 16.4 166 20-191 2-169 (220)
2 2v70_A SLIT-2, SLIT homolog 2 100.0 2.1E-28 7.3E-33 183.1 16.2 166 20-191 2-170 (220)
3 2o6s_A Variable lymphocyte rec 100.0 9.9E-28 3.4E-32 177.8 17.1 163 23-191 1-165 (208)
4 3m19_A Variable lymphocyte rec 100.0 4E-28 1.4E-32 184.9 15.1 181 22-206 3-187 (251)
5 2xot_A Amphoterin-induced prot 100.0 1.3E-27 4.3E-32 191.3 15.5 178 17-199 6-188 (361)
6 1ozn_A Reticulon 4 receptor; N 100.0 3.2E-27 1.1E-31 183.0 17.3 179 22-203 1-182 (285)
7 2id5_A Lingo-1, leucine rich r 99.9 9.3E-27 3.2E-31 192.3 16.8 180 21-204 1-182 (477)
8 4g8a_A TOLL-like receptor 4; l 99.9 5.2E-27 1.8E-31 199.1 15.4 177 21-201 21-200 (635)
9 3zyi_A Leucine-rich repeat-con 99.9 1.7E-26 6E-31 189.7 18.0 165 20-188 43-210 (452)
10 3zyj_A Leucine-rich repeat-con 99.9 2.4E-26 8.2E-31 188.3 18.6 164 20-187 32-198 (440)
11 2o6q_A Variable lymphocyte rec 99.9 4.5E-26 1.5E-30 175.4 17.5 177 25-205 10-188 (270)
12 2z80_A TOLL-like receptor 2, v 99.9 6E-27 2E-31 186.7 12.0 199 1-204 1-204 (353)
13 3e6j_A Variable lymphocyte rec 99.9 1.7E-25 5.7E-30 168.3 17.0 164 21-191 11-176 (229)
14 1p9a_G Platelet glycoprotein I 99.9 4.7E-25 1.6E-29 171.4 17.7 177 25-205 2-179 (290)
15 2z66_A Variable lymphocyte rec 99.9 1.2E-25 4E-30 175.8 12.5 177 23-205 1-206 (306)
16 2xwt_C Thyrotropin receptor; s 99.9 1.5E-25 5E-30 169.5 12.4 161 21-189 2-171 (239)
17 2ft3_A Biglycan; proteoglycan, 99.9 8.2E-24 2.8E-28 167.2 17.4 139 18-163 22-160 (332)
18 2z62_A TOLL-like receptor 4, v 99.9 4.4E-24 1.5E-28 164.6 15.3 173 25-201 1-176 (276)
19 3t6q_A CD180 antigen; protein- 99.9 2.8E-24 9.7E-29 182.1 15.1 177 21-201 2-180 (606)
20 2wfh_A SLIT homolog 2 protein 99.9 1.2E-23 4.2E-28 154.2 15.1 137 21-164 2-140 (193)
21 1xku_A Decorin; proteoglycan, 99.9 1.9E-23 6.5E-28 164.9 16.6 162 20-188 22-185 (330)
22 3v47_A TOLL-like receptor 5B a 99.9 1E-23 3.5E-28 172.9 14.4 171 20-197 1-177 (455)
23 1w8a_A SLIT protein; signaling 99.9 2.6E-23 9E-28 152.3 13.9 138 22-165 1-141 (192)
24 3vq2_A TLR4, TOLL-like recepto 99.9 2.8E-23 9.4E-28 176.1 15.9 174 24-201 4-180 (606)
25 2o6r_A Variable lymphocyte rec 99.9 7.2E-23 2.5E-27 147.9 14.6 137 23-165 1-139 (177)
26 1ziw_A TOLL-like receptor 3; i 99.9 4.8E-23 1.6E-27 176.8 15.2 165 26-196 1-167 (680)
27 2o6q_A Variable lymphocyte rec 99.9 2.1E-22 7.3E-27 154.8 16.7 169 35-205 39-212 (270)
28 2z63_A TOLL-like receptor 4, v 99.9 8.6E-23 2.9E-27 171.7 15.6 172 25-200 1-175 (570)
29 4ay9_X Follicle-stimulating ho 99.9 1.4E-22 4.9E-27 161.3 13.1 178 22-206 1-210 (350)
30 2z81_A CD282 antigen, TOLL-lik 99.9 8.5E-23 2.9E-27 171.1 11.1 171 22-203 3-177 (549)
31 3m19_A Variable lymphocyte rec 99.9 1.6E-21 5.6E-26 148.3 16.5 154 34-189 36-194 (251)
32 2z80_A TOLL-like receptor 2, v 99.9 1.7E-22 5.7E-27 161.0 11.2 198 4-203 8-227 (353)
33 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-21 4.1E-26 151.6 15.7 167 35-203 34-206 (285)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.3E-22 1.1E-26 168.3 13.5 173 18-197 19-194 (562)
35 3rfs_A Internalin B, repeat mo 99.9 2.7E-21 9.3E-26 148.8 16.3 163 36-202 44-209 (272)
36 3j0a_A TOLL-like receptor 5; m 99.9 4.1E-21 1.4E-25 168.6 15.6 171 26-203 1-179 (844)
37 3rfs_A Internalin B, repeat mo 99.9 1.2E-20 4.2E-25 145.1 15.6 156 34-191 64-222 (272)
38 3zyj_A Leucine-rich repeat-con 99.9 1.5E-20 5.2E-25 153.8 16.9 169 35-205 90-286 (440)
39 3zyi_A Leucine-rich repeat-con 99.9 2.3E-20 8E-25 153.2 17.0 169 35-205 101-297 (452)
40 2xwt_C Thyrotropin receptor; s 99.9 6.7E-21 2.3E-25 143.8 12.4 169 34-205 32-212 (239)
41 2v9t_B SLIT homolog 2 protein 99.8 1.8E-20 6.2E-25 139.9 12.6 145 57-206 14-160 (220)
42 1xku_A Decorin; proteoglycan, 99.8 8.7E-20 3E-24 143.9 16.6 166 35-204 102-269 (330)
43 2v70_A SLIT-2, SLIT homolog 2 99.8 3.6E-20 1.2E-24 138.3 12.8 145 57-206 14-161 (220)
44 2z62_A TOLL-like receptor 4, v 99.8 4.8E-20 1.6E-24 141.9 13.5 169 35-205 30-231 (276)
45 1p9a_G Platelet glycoprotein I 99.8 4.3E-20 1.5E-24 143.4 13.3 150 35-189 33-187 (290)
46 3g39_A Variable lymphocyte rec 99.8 5.2E-20 1.8E-24 132.1 12.4 115 22-142 2-118 (170)
47 2r9u_A Variable lymphocyte rec 99.8 6.3E-20 2.2E-24 132.2 12.5 118 20-143 3-122 (174)
48 2z66_A Variable lymphocyte rec 99.8 3.4E-20 1.2E-24 144.7 11.2 160 36-197 81-246 (306)
49 2id5_A Lingo-1, leucine rich r 99.8 3.8E-20 1.3E-24 152.7 11.1 168 35-204 34-206 (477)
50 2ft3_A Biglycan; proteoglycan, 99.8 1.5E-19 5E-24 142.7 13.4 156 35-194 104-284 (332)
51 3e6j_A Variable lymphocyte rec 99.8 1.2E-19 4.1E-24 136.3 12.2 145 56-206 21-167 (229)
52 4fcg_A Uncharacterized protein 99.8 1.4E-19 4.8E-24 142.8 13.2 79 33-115 81-161 (328)
53 2o6s_A Variable lymphocyte rec 99.8 2E-19 6.8E-24 132.9 13.1 145 57-206 10-156 (208)
54 3o6n_A APL1; leucine-rich repe 99.8 1.2E-19 4E-24 146.2 12.6 134 54-189 45-180 (390)
55 1ogq_A PGIP-2, polygalacturona 99.8 1.2E-19 4.2E-24 142.3 11.9 167 35-204 52-227 (313)
56 2z7x_B TOLL-like receptor 1, v 99.8 1.4E-19 4.9E-24 150.7 12.8 157 35-197 2-163 (520)
57 3o6n_A APL1; leucine-rich repe 99.8 3.7E-19 1.3E-23 143.3 14.5 149 35-188 47-200 (390)
58 4fcg_A Uncharacterized protein 99.8 2.2E-19 7.5E-24 141.7 12.5 166 34-202 105-305 (328)
59 3oja_B Anopheles plasmodium-re 99.8 5.7E-19 1.9E-23 149.7 14.7 153 37-191 33-188 (597)
60 3o53_A Protein LRIM1, AGAP0063 99.8 1.1E-19 3.9E-24 142.6 9.5 162 35-200 101-264 (317)
61 2xot_A Amphoterin-induced prot 99.8 1.6E-19 5.6E-24 144.2 10.3 154 35-190 41-205 (361)
62 1w8a_A SLIT protein; signaling 99.8 5.6E-19 1.9E-23 129.1 12.3 131 57-192 11-144 (192)
63 3oja_B Anopheles plasmodium-re 99.8 4E-19 1.4E-23 150.6 12.7 130 35-166 53-187 (597)
64 3v47_A TOLL-like receptor 5B a 99.8 9.1E-19 3.1E-23 143.5 14.3 135 55-191 276-412 (455)
65 1ogq_A PGIP-2, polygalacturona 99.8 4.7E-19 1.6E-23 138.9 11.9 168 35-205 78-275 (313)
66 2wfh_A SLIT homolog 2 protein 99.8 6.1E-19 2.1E-23 129.1 11.7 129 57-191 13-143 (193)
67 2o6r_A Variable lymphocyte rec 99.8 8.8E-19 3E-23 126.3 11.6 131 56-191 9-141 (177)
68 4g8a_A TOLL-like receptor 4; l 99.8 9.3E-19 3.2E-23 148.4 13.0 161 34-196 53-223 (635)
69 1ziw_A TOLL-like receptor 3; i 99.8 1.5E-18 5.3E-23 148.8 13.8 167 34-202 26-199 (680)
70 3vq2_A TLR4, TOLL-like recepto 99.8 2E-18 6.8E-23 146.2 14.1 161 35-198 378-544 (606)
71 3rgz_A Protein brassinosteroid 99.8 1.9E-18 6.4E-23 150.4 13.5 169 35-205 468-711 (768)
72 1h6u_A Internalin H; cell adhe 99.8 5.5E-18 1.9E-22 132.6 14.6 144 35-188 43-187 (308)
73 3t6q_A CD180 antigen; protein- 99.8 2.2E-18 7.5E-23 146.0 12.9 160 35-196 35-201 (606)
74 3oja_A Leucine-rich immune mol 99.8 7.8E-19 2.7E-23 145.5 9.7 159 35-197 101-261 (487)
75 1h6t_A Internalin B; cell adhe 99.8 5.5E-18 1.9E-22 131.6 13.4 158 35-204 48-206 (291)
76 2z63_A TOLL-like receptor 4, v 99.8 2.1E-18 7.1E-23 144.9 11.7 161 35-197 30-200 (570)
77 4ezg_A Putative uncharacterize 99.8 6.1E-18 2.1E-22 124.0 10.9 145 35-188 46-195 (197)
78 1wwl_A Monocyte differentiatio 99.8 1.9E-18 6.4E-23 135.4 8.6 144 55-205 150-303 (312)
79 2ell_A Acidic leucine-rich nuc 99.8 2.1E-18 7.3E-23 123.2 8.1 140 47-191 17-164 (168)
80 1h6u_A Internalin H; cell adhe 99.8 1.5E-17 5.1E-22 130.1 13.3 159 34-204 64-223 (308)
81 2z81_A CD282 antigen, TOLL-lik 99.7 4.9E-18 1.7E-22 142.2 10.8 153 34-188 27-186 (549)
82 1xeu_A Internalin C; cellular 99.7 6.2E-18 2.1E-22 129.5 10.4 150 34-194 42-192 (263)
83 2z7x_B TOLL-like receptor 1, v 99.7 2.2E-17 7.7E-22 137.5 14.3 132 55-190 349-484 (520)
84 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 4.2E-17 1.4E-21 137.2 16.0 133 55-191 378-514 (562)
85 1xeu_A Internalin C; cellular 99.7 1.9E-17 6.4E-22 126.8 11.5 155 37-204 23-178 (263)
86 3rgz_A Protein brassinosteroid 99.7 2.3E-17 7.8E-22 143.6 12.9 140 55-196 419-560 (768)
87 1m9s_A Internalin B; cell inva 99.7 3.9E-17 1.3E-21 138.4 13.6 159 34-204 44-203 (605)
88 4fmz_A Internalin; leucine ric 99.7 4.4E-17 1.5E-21 129.1 12.9 161 36-206 180-341 (347)
89 3o53_A Protein LRIM1, AGAP0063 99.7 7.1E-18 2.4E-22 132.4 8.1 143 54-205 99-244 (317)
90 4eco_A Uncharacterized protein 99.7 1E-16 3.4E-21 136.9 15.8 171 35-206 379-574 (636)
91 4ezg_A Putative uncharacterize 99.7 3.5E-17 1.2E-21 119.9 11.0 142 54-205 44-188 (197)
92 1wwl_A Monocyte differentiatio 99.7 1.2E-17 4.1E-22 130.8 9.0 155 34-191 96-270 (312)
93 3oja_A Leucine-rich immune mol 99.7 1.3E-17 4.3E-22 138.3 8.2 165 35-205 60-244 (487)
94 3cvr_A Invasion plasmid antige 99.7 6.8E-17 2.3E-21 135.8 12.7 151 34-205 60-237 (571)
95 4eco_A Uncharacterized protein 99.7 4.7E-17 1.6E-21 138.9 11.6 169 35-205 355-543 (636)
96 1h6t_A Internalin B; cell adhe 99.7 1E-16 3.5E-21 124.4 12.4 150 34-193 69-219 (291)
97 3cvr_A Invasion plasmid antige 99.7 1.8E-16 6.1E-21 133.3 14.5 151 35-199 82-255 (571)
98 4glp_A Monocyte differentiatio 99.7 4.6E-17 1.6E-21 127.3 8.2 143 55-204 146-300 (310)
99 2ifg_A High affinity nerve gro 99.7 1.5E-16 5.1E-21 126.2 11.1 111 23-140 1-117 (347)
100 4glp_A Monocyte differentiatio 99.7 6.1E-17 2.1E-21 126.6 8.6 165 35-204 93-278 (310)
101 3g06_A SSPH2 (leucine-rich rep 99.7 1.2E-16 4E-21 135.8 10.8 151 22-189 30-196 (622)
102 3j0a_A TOLL-like receptor 5; m 99.7 1.9E-16 6.5E-21 139.1 12.3 159 34-194 25-194 (844)
103 4ecn_A Leucine-rich repeat pro 99.7 8.2E-16 2.8E-20 134.8 15.9 169 35-205 621-813 (876)
104 1a9n_A U2A', U2A'; complex (nu 99.7 5.9E-17 2E-21 116.7 7.3 129 54-187 19-153 (176)
105 2je0_A Acidic leucine-rich nuc 99.7 2.6E-17 9E-22 115.2 4.5 122 55-181 18-147 (149)
106 4fmz_A Internalin; leucine ric 99.7 5.9E-16 2E-20 122.6 12.7 162 35-206 157-319 (347)
107 4ay9_X Follicle-stimulating ho 99.7 7E-16 2.4E-20 122.6 13.0 166 35-203 32-231 (350)
108 1o6v_A Internalin A; bacterial 99.7 9.8E-16 3.4E-20 126.1 13.8 136 55-202 244-379 (466)
109 4ecn_A Leucine-rich repeat pro 99.7 3.6E-16 1.2E-20 137.1 10.6 149 34-187 449-632 (876)
110 2je0_A Acidic leucine-rich nuc 99.7 1.9E-16 6.4E-21 110.8 6.9 127 79-206 16-148 (149)
111 3g39_A Variable lymphocyte rec 99.7 8.9E-16 3E-20 109.9 10.5 104 57-165 12-117 (170)
112 1o6v_A Internalin A; bacterial 99.6 1.8E-15 6.2E-20 124.6 13.6 149 34-190 47-215 (466)
113 1m9s_A Internalin B; cell inva 99.6 1.1E-15 3.9E-20 129.5 12.5 152 34-195 66-218 (605)
114 4b8c_D Glucose-repressible alc 99.6 2.3E-16 8E-21 136.4 7.7 153 36-196 176-338 (727)
115 3sb4_A Hypothetical leucine ri 99.6 1.7E-15 5.8E-20 119.4 11.6 101 103-205 225-328 (329)
116 2ell_A Acidic leucine-rich nuc 99.6 1.1E-15 3.8E-20 109.0 9.2 130 34-167 25-164 (168)
117 2r9u_A Variable lymphocyte rec 99.6 2.4E-15 8.2E-20 108.1 10.7 105 57-166 15-121 (174)
118 1a9n_A U2A', U2A'; complex (nu 99.6 9.6E-16 3.3E-20 110.3 7.4 126 78-205 17-147 (176)
119 3bz5_A Internalin-J, INLJ; leu 99.6 1.8E-14 6E-19 118.5 15.4 96 35-140 44-141 (457)
120 3bz5_A Internalin-J, INLJ; leu 99.6 2.5E-14 8.6E-19 117.6 16.2 151 35-197 87-256 (457)
121 4b8c_D Glucose-repressible alc 99.6 2.2E-16 7.4E-21 136.6 2.2 137 54-195 224-362 (727)
122 3g06_A SSPH2 (leucine-rich rep 99.6 4.8E-14 1.6E-18 119.8 16.1 87 104-197 221-307 (622)
123 1jl5_A Outer protein YOPM; leu 99.6 3.6E-14 1.2E-18 116.5 14.6 123 36-166 74-211 (454)
124 3sb4_A Hypothetical leucine ri 99.6 9.1E-15 3.1E-19 115.2 9.8 147 54-205 49-304 (329)
125 1dce_A Protein (RAB geranylger 99.6 6.1E-15 2.1E-19 124.2 8.8 135 55-193 410-552 (567)
126 2ast_B S-phase kinase-associat 99.6 1.3E-15 4.5E-20 120.0 3.6 166 35-203 72-252 (336)
127 1jl5_A Outer protein YOPM; leu 99.6 1.3E-13 4.5E-18 113.2 15.5 138 36-188 114-251 (454)
128 1ds9_A Outer arm dynein; leuci 99.5 1.4E-17 4.8E-22 122.2 -8.4 106 55-165 49-155 (198)
129 1dce_A Protein (RAB geranylger 99.5 2.1E-14 7.2E-19 120.9 9.3 98 105-205 442-540 (567)
130 3goz_A Leucine-rich repeat-con 99.5 8.9E-15 3.1E-19 116.7 4.6 153 35-189 24-211 (362)
131 2ifg_A High affinity nerve gro 99.5 8.7E-14 3E-18 110.2 9.0 103 58-165 12-118 (347)
132 1ds9_A Outer arm dynein; leuci 99.5 1.3E-16 4.5E-21 117.0 -6.9 131 55-192 24-158 (198)
133 3goz_A Leucine-rich repeat-con 99.5 2E-14 7E-19 114.6 3.6 159 35-194 53-245 (362)
134 2ca6_A RAN GTPase-activating p 99.4 1.2E-14 4.1E-19 116.8 -0.0 18 100-117 183-200 (386)
135 2ast_B S-phase kinase-associat 99.4 8.3E-14 2.8E-18 109.6 3.9 169 35-205 95-279 (336)
136 2ca6_A RAN GTPase-activating p 99.4 7.3E-14 2.5E-18 112.2 2.7 134 54-189 94-259 (386)
137 4fdw_A Leucine rich hypothetic 99.3 1.6E-11 5.4E-16 99.3 12.5 103 92-197 259-368 (401)
138 4fdw_A Leucine rich hypothetic 99.3 3E-11 1E-15 97.6 12.2 137 55-197 181-345 (401)
139 1z7x_W Ribonuclease inhibitor; 99.3 6.2E-13 2.1E-17 108.9 1.5 151 36-188 6-184 (461)
140 1z7x_W Ribonuclease inhibitor; 99.3 1.6E-13 5.6E-18 112.3 -2.8 62 54-117 227-297 (461)
141 3rfe_A Platelet glycoprotein I 99.2 3.6E-11 1.2E-15 82.0 7.3 65 22-92 1-67 (130)
142 3un9_A NLR family member X1; l 99.2 2.8E-12 9.5E-17 102.7 0.5 159 35-194 74-259 (372)
143 3un9_A NLR family member X1; l 99.1 2.6E-12 8.8E-17 102.9 -2.5 136 54-189 72-226 (372)
144 3ogk_B Coronatine-insensitive 98.7 3E-09 1E-13 89.6 2.0 134 55-189 379-528 (592)
145 4h09_A Hypothetical leucine ri 98.7 1.1E-07 3.8E-12 75.9 11.0 133 55-194 218-352 (379)
146 3ogk_B Coronatine-insensitive 98.7 4.8E-09 1.6E-13 88.3 2.2 101 55-158 139-251 (592)
147 4gt6_A Cell surface protein; l 98.6 4.9E-07 1.7E-11 72.7 10.7 114 66-185 253-368 (394)
148 4h09_A Hypothetical leucine ri 98.5 1.1E-06 3.6E-11 70.2 12.1 124 78-205 215-340 (379)
149 2p1m_B Transport inhibitor res 98.5 1.4E-08 4.8E-13 85.5 1.1 131 55-187 373-519 (594)
150 1io0_A Tropomodulin; LRR prote 98.5 1.8E-08 6.1E-13 72.7 0.8 110 78-187 34-164 (185)
151 4fs7_A Uncharacterized protein 98.5 4.6E-07 1.6E-11 72.8 9.2 114 66-184 59-195 (394)
152 2p1m_B Transport inhibitor res 98.5 4.3E-08 1.5E-12 82.5 3.1 105 54-160 105-221 (594)
153 3rw6_A Nuclear RNA export fact 98.5 1.2E-08 4.2E-13 77.6 -1.0 65 125-190 169-236 (267)
154 2ra8_A Uncharacterized protein 98.4 1.5E-07 5.3E-12 74.9 4.3 130 54-188 172-321 (362)
155 4fs7_A Uncharacterized protein 98.4 2.3E-06 7.9E-11 68.7 10.9 85 97-184 290-376 (394)
156 4gt6_A Cell surface protein; l 98.4 1.6E-06 5.6E-11 69.6 9.7 123 55-186 266-390 (394)
157 1io0_A Tropomodulin; LRR prote 98.3 6E-08 2E-12 69.9 0.2 109 54-164 36-165 (185)
158 3rw6_A Nuclear RNA export fact 98.2 1.1E-06 3.7E-11 66.9 4.7 100 85-187 148-262 (267)
159 2ra8_A Uncharacterized protein 98.1 3.7E-06 1.3E-10 66.9 4.9 148 35-185 174-341 (362)
160 3e4g_A ATP synthase subunit S, 97.8 5.5E-06 1.9E-10 58.9 1.6 80 81-160 62-149 (176)
161 3rfe_A Platelet glycoprotein I 97.8 4.3E-05 1.5E-09 51.6 6.0 55 108-163 12-68 (130)
162 3e4g_A ATP synthase subunit S, 97.8 3.7E-06 1.3E-10 59.8 0.4 84 104-187 61-153 (176)
163 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00016 5.5E-09 52.3 3.2 109 78-186 39-169 (197)
164 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00042 1.4E-08 50.1 2.6 108 54-163 41-170 (197)
165 2lz0_A Uncharacterized protein 91.3 0.28 9.7E-06 31.0 4.2 46 114-160 6-53 (100)
166 2lz0_A Uncharacterized protein 90.9 0.22 7.6E-06 31.5 3.4 46 65-113 7-52 (100)
167 2ljs_A Trypsin inhibitor 3; be 27.5 16 0.00054 16.9 0.3 11 21-31 15-25 (30)
No 1
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.97 E-value=1.4e-29 Score=189.55 Aligned_cols=166 Identities=19% Similarity=0.365 Sum_probs=156.6
Q ss_pred ccCCCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchh
Q psy14766 20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA 99 (207)
Q Consensus 20 ~~~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 99 (207)
+..||..|.|. ...++|++.+++++|..+++.++.|++++|.++.+++..+. ++++|+.|++++|+++.+.+..
T Consensus 2 ~~~CP~~C~C~----~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~--~l~~L~~L~Ls~N~i~~~~~~~ 75 (220)
T 2v9t_B 2 SLHCPAACTCS----NNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFS--PYKKLRRIDLSNNQISELAPDA 75 (220)
T ss_dssp CCCSCTTSEEE----TTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSST--TCTTCCEEECCSSCCCEECTTT
T ss_pred CCCCCCCCEEC----CCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhh--CCCCCCEEECCCCcCCCcCHHH
Confidence 57899999999 47899999999999999999999999999999999998888 7899999999999999999999
Q ss_pred hcCCCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCcc
Q psy14766 100 FRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIR 177 (207)
Q Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 177 (207)
|.++++|+.|++++|.++.++...+ +++|+.|++++|+++.+++..+..+++|++|+|++|.++.+++..+..+++|+
T Consensus 76 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 155 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155 (220)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCC
Confidence 9999999999999999999998876 89999999999999999998999999999999999999999998899999999
Q ss_pred EEEeCCCCCCCCCC
Q psy14766 178 RPTITGQWKPRQNE 191 (207)
Q Consensus 178 ~l~l~~n~l~~~~~ 191 (207)
.+++++|++.+...
T Consensus 156 ~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 156 TMHLAQNPFICDCH 169 (220)
T ss_dssp EEECCSSCEECSGG
T ss_pred EEEeCCCCcCCCCc
Confidence 99999999986543
No 2
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.96 E-value=2.1e-28 Score=183.08 Aligned_cols=166 Identities=25% Similarity=0.425 Sum_probs=152.9
Q ss_pred ccCCCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccc-hhhhhhcCCCcceEEEecCCcceeeCch
Q psy14766 20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQ-KEIFLQMGITNIQKLYLRKCKLEFVDDR 98 (207)
Q Consensus 20 ~~~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 98 (207)
..+||..|.|.+ +.++|+++.++++|..++..++.|++++|.++.++ ...+. .+++|+.|++++|.++.+++.
T Consensus 2 ~~~CP~~C~C~~----~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~--~l~~L~~L~L~~N~i~~i~~~ 75 (220)
T 2v70_A 2 SLACPEKCRCEG----TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFK--KLPQLRKINFSNNKITDIEEG 75 (220)
T ss_dssp --CCCTTCEEET----TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGG--GCTTCCEEECCSSCCCEECTT
T ss_pred CCCCCCCCEECC----CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhc--cCCCCCEEECCCCcCCEECHH
Confidence 468999999995 68999999999999999999999999999999885 45666 789999999999999999988
Q ss_pred hhcCCCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCc
Q psy14766 99 AFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQI 176 (207)
Q Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 176 (207)
.|.++++|+.|++++|.++.++...+ +++|+.|++++|+++.+.+..+..+++|++|+|++|+++++++..+..+++|
T Consensus 76 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 155 (220)
T 2v70_A 76 AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTC
T ss_pred HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCC
Confidence 99999999999999999999888766 8999999999999999988889999999999999999999988889999999
Q ss_pred cEEEeCCCCCCCCCC
Q psy14766 177 RRPTITGQWKPRQNE 191 (207)
Q Consensus 177 ~~l~l~~n~l~~~~~ 191 (207)
+.|++++|++.+..+
T Consensus 156 ~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 156 STLNLLANPFNCNCY 170 (220)
T ss_dssp CEEECCSCCEECSGG
T ss_pred CEEEecCcCCcCCCc
Confidence 999999999987654
No 3
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.96 E-value=9.9e-28 Score=177.78 Aligned_cols=163 Identities=25% Similarity=0.434 Sum_probs=153.0
Q ss_pred CCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcC
Q psy14766 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102 (207)
Q Consensus 23 cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~ 102 (207)
||..|.|.| +.++|++.+++++|..++++++.|++++|.++.+++..+. .+++|++|++++|+++.+++..|..
T Consensus 1 Cp~~C~C~~----~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (208)
T 2o6s_A 1 CPSRCSCSG----TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFD--ELTSLTQLYLGGNKLQSLPNGVFNK 74 (208)
T ss_dssp CCTTCEEET----TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CcCCCEECC----CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhc--ccccCcEEECCCCccCccChhhcCC
Confidence 999999995 7899999999999999999999999999999999998887 7899999999999999998888999
Q ss_pred CCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEE
Q psy14766 103 VTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPT 180 (207)
Q Consensus 103 l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~ 180 (207)
+++|+.|++++|.++.++...+ +++|+.|++++|+++.+++..+..+++|++|++++|.++++++..+..+++|+.++
T Consensus 75 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence 9999999999999998888765 89999999999999999988889999999999999999999988899999999999
Q ss_pred eCCCCCCCCCC
Q psy14766 181 ITGQWKPRQNE 191 (207)
Q Consensus 181 l~~n~l~~~~~ 191 (207)
+++|++.+..+
T Consensus 155 l~~N~~~~~~~ 165 (208)
T 2o6s_A 155 LHDNPWDCTCP 165 (208)
T ss_dssp CCSCCBCCCTT
T ss_pred ecCCCeecCCC
Confidence 99999887655
No 4
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.96 E-value=4e-28 Score=184.95 Aligned_cols=181 Identities=23% Similarity=0.418 Sum_probs=163.3
Q ss_pred CCCCC--CEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchh
Q psy14766 22 SCPLG--CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA 99 (207)
Q Consensus 22 ~cp~~--c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 99 (207)
+||.. |.|.. +.+.++|++..++.+|..++++++.|++++|.++.+++..+. ++++|++|++++|.++.+.+..
T Consensus 3 ~Cp~~~gC~C~~--~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~ 78 (251)
T 3m19_A 3 TCETVTGCTCNE--GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFR--GLTKLTWLNLDYNQLQTLSAGV 78 (251)
T ss_dssp -CHHHHSSEEEG--GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTTT
T ss_pred cCCCCCceEcCC--CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhc--CcccCCEEECCCCcCCccCHhH
Confidence 68876 99963 357899999999999999999999999999999999998888 7899999999999999999889
Q ss_pred hcCCCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCcc
Q psy14766 100 FRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIR 177 (207)
Q Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 177 (207)
|.++++|+.|++++|.++.++...+ +++|+.|++++|.++.+++..+..+++|++|++++|+++++++..+..+++|+
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence 9999999999999999998887766 89999999999999999888888999999999999999999988899999999
Q ss_pred EEEeCCCCCCCCCCchhhhhcccccCcCC
Q psy14766 178 RPTITGQWKPRQNEDSDAQLAKGRAHDFR 206 (207)
Q Consensus 178 ~l~l~~n~l~~~~~~~~~~l~~~~~~~~~ 206 (207)
.|++++|.+++..++.+..+++++.+.+.
T Consensus 159 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred EEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 99999999998888888888777766553
No 5
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.95 E-value=1.3e-27 Score=191.31 Aligned_cols=178 Identities=24% Similarity=0.380 Sum_probs=159.8
Q ss_pred hhhccCCCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeC
Q psy14766 17 SVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96 (207)
Q Consensus 17 ~~~~~~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 96 (207)
......||..|.|. ...++|++++++.+|..++..++.|++++|.++.+++..+.. ++++|+.|++++|.++.++
T Consensus 6 ~~~~~~Cp~~C~C~----~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~-~l~~L~~L~L~~N~i~~i~ 80 (361)
T 2xot_A 6 GRSVVSCPANCLCA----SNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPT-RLTNLHSLLLSHNHLNFIS 80 (361)
T ss_dssp -CCCTTCCTTCEEE----TTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSS-CCTTCCEEECCSSCCCEEC
T ss_pred CCcCCCCCCCCEEC----CCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhh-cccccCEEECCCCcCCccC
Confidence 34557999999998 468999999999999999999999999999999999887731 4789999999999999999
Q ss_pred chhhcCCCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccC---C
Q psy14766 97 DRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF---Y 171 (207)
Q Consensus 97 ~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~---~ 171 (207)
+..|.++++|+.|++++|.++.++...+ +++|+.|++++|++..+.+..|..+++|+.|+|++|.++.++...+ .
T Consensus 81 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~ 160 (361)
T 2xot_A 81 SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160 (361)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC---
T ss_pred hhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcc
Confidence 9999999999999999999999888766 8999999999999999988899999999999999999999998877 5
Q ss_pred CCCCccEEEeCCCCCCCCCCchhhhhcc
Q psy14766 172 GSDQIRRPTITGQWKPRQNEDSDAQLAK 199 (207)
Q Consensus 172 ~l~~L~~l~l~~n~l~~~~~~~~~~l~~ 199 (207)
.+++|+.|++++|.++...++.+..++.
T Consensus 161 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 188 (361)
T 2xot_A 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPA 188 (361)
T ss_dssp -CTTCCEEECCSSCCCCCCHHHHHHSCH
T ss_pred cCCcCCEEECCCCCCCccCHHHhhhccH
Confidence 6899999999999999887777776654
No 6
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.2e-27 Score=182.99 Aligned_cols=179 Identities=22% Similarity=0.382 Sum_probs=135.1
Q ss_pred CCCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhc
Q psy14766 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101 (207)
Q Consensus 22 ~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~ 101 (207)
+||..|.|... ..+.++|++.+++.+|..++++++.|++++|.++.+++..+. .+++|++|++++|.++.+.+..|.
T Consensus 1 ~CP~~C~C~~~-~~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~ 77 (285)
T 1ozn_A 1 PCPGACVCYNE-PKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFR--ACRNLTILWLHSNVLARIDAAAFT 77 (285)
T ss_dssp CCCTTCEEECS-SSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTT
T ss_pred CcCCCceECCC-CCeEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcc--cCCCCCEEECCCCccceeCHhhcC
Confidence 59999999842 246899999999999999999999999999999999988887 788899999999988888888888
Q ss_pred CCCCCCEEEcCCCC-CCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccE
Q psy14766 102 GVTNMDELDLSDNL-LSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRR 178 (207)
Q Consensus 102 ~l~~L~~L~l~~n~-l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 178 (207)
++++|+.|++++|. ++.++...+ +++|+.|++++|.+..+++..+..+++|++|++++|.++.+++..+..+++|+.
T Consensus 78 ~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 157 (285)
T 1ozn_A 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157 (285)
T ss_dssp TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE
Confidence 88888888888886 776654444 667777777777777666666666666666666666666666555666666666
Q ss_pred EEeCCCCCCCCCCchhhhhcccccC
Q psy14766 179 PTITGQWKPRQNEDSDAQLAKGRAH 203 (207)
Q Consensus 179 l~l~~n~l~~~~~~~~~~l~~~~~~ 203 (207)
|++++|.++...+..+..+++++.+
T Consensus 158 L~l~~n~l~~~~~~~~~~l~~L~~L 182 (285)
T 1ozn_A 158 LFLHGNRISSVPERAFRGLHSLDRL 182 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEE
T ss_pred EECCCCcccccCHHHhcCccccCEE
Confidence 6666666665555445554444443
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=9.3e-27 Score=192.31 Aligned_cols=180 Identities=24% Similarity=0.433 Sum_probs=163.8
Q ss_pred cCCCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhh
Q psy14766 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF 100 (207)
Q Consensus 21 ~~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f 100 (207)
.+||..|.|.. ....++|++.+++.+|..++++++.|++++|.++.+++..|. .+++|++|++++|.++.+.+..|
T Consensus 1 ~~Cp~~C~C~~--~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~ 76 (477)
T 2id5_A 1 TGCPPRCECSA--QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFA--SFPHLEELELNENIVSAVEPGAF 76 (477)
T ss_dssp CCCSTTCEEET--TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTT
T ss_pred CcccCCCeECC--CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHcc--CCCCCCEEECCCCccCEeChhhh
Confidence 37999999983 246899999999999999999999999999999999998888 89999999999999999999999
Q ss_pred cCCCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccE
Q psy14766 101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRR 178 (207)
Q Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 178 (207)
.++++|+.|++++|.++.++...+ +++|+.|++++|.+..+.+..+..+++|++|++++|.++.+.+..+.++++|+.
T Consensus 77 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 156 (477)
T 2id5_A 77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156 (477)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCE
T ss_pred hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCE
Confidence 999999999999999999988766 899999999999999998888999999999999999999998888999999999
Q ss_pred EEeCCCCCCCCCCchhhhhcccccCc
Q psy14766 179 PTITGQWKPRQNEDSDAQLAKGRAHD 204 (207)
Q Consensus 179 l~l~~n~l~~~~~~~~~~l~~~~~~~ 204 (207)
|++++|.++...+..+..+++++.+.
T Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALSHLHGLIVLR 182 (477)
T ss_dssp EEEESCCCSSCCHHHHTTCTTCCEEE
T ss_pred EECCCCcCcccChhHhcccCCCcEEe
Confidence 99999999987777777766665544
No 8
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=5.2e-27 Score=199.10 Aligned_cols=177 Identities=17% Similarity=0.309 Sum_probs=158.7
Q ss_pred cCCCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhh
Q psy14766 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF 100 (207)
Q Consensus 21 ~~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f 100 (207)
|.|..+|.|.. ....++|++++++++|.++|+++++|++++|.|+++++..|. ++++|++|++++|+++.+++++|
T Consensus 21 p~~~~~c~~~~--~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~--~l~~L~~L~Ls~N~i~~i~~~~f 96 (635)
T 4g8a_A 21 PESWEPCVEVV--PNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAY 96 (635)
T ss_dssp ----CCSEEEE--TTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTT
T ss_pred CCCCCCccccC--CCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHh--CCCCCCEEECCCCcCCCcChhHh
Confidence 55667788874 346799999999999999999999999999999999999998 89999999999999999999999
Q ss_pred cCCCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeec-cccCCCCCCcc
Q psy14766 101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY-SEAFYGSDQIR 177 (207)
Q Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~ 177 (207)
+++++|++|++++|+++.+|...+ +++|++|++++|+++.+++..++.+++|++|++++|.++.+. +..+..+++|+
T Consensus 97 ~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 176 (635)
T 4g8a_A 97 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176 (635)
T ss_dssp TTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred cCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence 999999999999999999998776 899999999999999999888999999999999999998865 56678899999
Q ss_pred EEEeCCCCCCCCCCchhhhhcccc
Q psy14766 178 RPTITGQWKPRQNEDSDAQLAKGR 201 (207)
Q Consensus 178 ~l~l~~n~l~~~~~~~~~~l~~~~ 201 (207)
.|++++|.+++..+..+..+.+.+
T Consensus 177 ~L~L~~N~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 177 HLDLSSNKIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp EEECCSSCCCEECGGGGHHHHTCT
T ss_pred hhcccCccccccccccccchhhhh
Confidence 999999999998888887776443
No 9
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.7e-26 Score=189.69 Aligned_cols=165 Identities=28% Similarity=0.513 Sum_probs=136.1
Q ss_pred ccCCCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchh
Q psy14766 20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA 99 (207)
Q Consensus 20 ~~~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 99 (207)
...||..|.|.+. ...++|++.+++.+|..++++++.|++++|.++.+++..|. ++++|+.|++++|.++.+.+..
T Consensus 43 ~~~Cp~~C~C~~~--~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~ 118 (452)
T 3zyi_A 43 PQNCPSVCSCSNQ--FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEVGA 118 (452)
T ss_dssp -CCCCTTSEECSS--SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTT
T ss_pred cCCCCCCCEECCC--CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcC--CCCCCCEEECCCCccCCcChhh
Confidence 4789999999842 46899999999999999999999999999999999999888 8999999999999999999999
Q ss_pred hcCCCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCC-CceeeeccccCCCCCCc
Q psy14766 100 FRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN-CQIHTIYSEAFYGSDQI 176 (207)
Q Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L 176 (207)
|.++++|+.|++++|.++.++...+ +++|+.|++++|.+..+++..+..+++|+.|++++ |.+..++...+.++++|
T Consensus 119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 198 (452)
T 3zyi_A 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198 (452)
T ss_dssp TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC
T ss_pred ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC
Confidence 9999999999999999998888766 88999999999999888776666666666666665 45555555555555555
Q ss_pred cEEEeCCCCCCC
Q psy14766 177 RRPTITGQWKPR 188 (207)
Q Consensus 177 ~~l~l~~n~l~~ 188 (207)
+.|++++|.++.
T Consensus 199 ~~L~L~~n~l~~ 210 (452)
T 3zyi_A 199 KYLNLGMCNIKD 210 (452)
T ss_dssp CEEECTTSCCSS
T ss_pred CEEECCCCcccc
Confidence 555555554443
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.4e-26 Score=188.28 Aligned_cols=164 Identities=29% Similarity=0.557 Sum_probs=135.8
Q ss_pred ccCCCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchh
Q psy14766 20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA 99 (207)
Q Consensus 20 ~~~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 99 (207)
+..||..|.|.. ....++|++.+++++|..++++++.|++++|.++.+++..+. ++++|++|++++|.++.+.+..
T Consensus 32 ~~~Cp~~C~C~~--~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~~ 107 (440)
T 3zyj_A 32 AQTCPSVCSCSN--QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFK--HLRHLEILQLSRNHIRTIEIGA 107 (440)
T ss_dssp -CCCCSSSEECT--TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTS--SCSSCCEEECCSSCCCEECGGG
T ss_pred cccCCCCCEeCC--CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhh--CCCCCCEEECCCCcCCccChhh
Confidence 478999999984 246899999999999999999999999999999999998888 8999999999999999999999
Q ss_pred hcCCCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCC-CceeeeccccCCCCCCc
Q psy14766 100 FRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN-CQIHTIYSEAFYGSDQI 176 (207)
Q Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L 176 (207)
|.++++|+.|++++|+++.++...+ +++|+.|++++|.+..+++..+..+++|++|++++ +.+..+++..+.++++|
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 187 (440)
T 3zyj_A 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187 (440)
T ss_dssp GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC
T ss_pred ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc
Confidence 9999999999999999999888666 88999999999999888776666666677776666 45555555555555555
Q ss_pred cEEEeCCCCCC
Q psy14766 177 RRPTITGQWKP 187 (207)
Q Consensus 177 ~~l~l~~n~l~ 187 (207)
+.|++++|.++
T Consensus 188 ~~L~L~~n~l~ 198 (440)
T 3zyj_A 188 RYLNLAMCNLR 198 (440)
T ss_dssp CEEECTTSCCS
T ss_pred CeecCCCCcCc
Confidence 55555555444
No 11
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=4.5e-26 Score=175.36 Aligned_cols=177 Identities=23% Similarity=0.421 Sum_probs=140.3
Q ss_pred CCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCC
Q psy14766 25 LGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104 (207)
Q Consensus 25 ~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~ 104 (207)
..|.|.. ..+.++|++..++.+|..++++++.|++++|.++.+++..+. ++++|++|++++|.++.+++..|.+++
T Consensus 10 ~~C~c~~--~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~i~~~~~~~l~ 85 (270)
T 2o6q_A 10 GVCSCNN--NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFH--RLTKLRLLYLNDNKLQTLPAGIFKELK 85 (270)
T ss_dssp CSBEEET--TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSS--SCTTCCEEECCSSCCSCCCTTTTSSCT
T ss_pred CCCEeCC--CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhc--CCCCCCEEECCCCccCeeChhhhcCCC
Confidence 4688873 457899999999999999999999999999999999988887 788999999999999888887888888
Q ss_pred CCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeC
Q psy14766 105 NMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTIT 182 (207)
Q Consensus 105 ~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~ 182 (207)
+|+.|++++|.++.++...+ +++|+.|++++|.++.+++..+..+++|++|++++|.++++++..+..+++|+.|+++
T Consensus 86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence 88888888888887776655 7778888888888877777667777777777777777777776666667777777777
Q ss_pred CCCCCCCCCchhhhhcccccCcC
Q psy14766 183 GQWKPRQNEDSDAQLAKGRAHDF 205 (207)
Q Consensus 183 ~n~l~~~~~~~~~~l~~~~~~~~ 205 (207)
+|.++...+..+..+++++.+.+
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L 188 (270)
T 2o6q_A 166 NNQLKRVPEGAFDKLTELKTLKL 188 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCcCcEeChhHhccCCCcCEEEC
Confidence 77777666655665555554443
No 12
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=6e-27 Score=186.66 Aligned_cols=199 Identities=21% Similarity=0.285 Sum_probs=156.0
Q ss_pred ChhhHHHHHHHHHHHh-hhhccCCCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCC
Q psy14766 1 MCHKFILSVFLLTLLA-SVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGI 79 (207)
Q Consensus 1 ~~~~~~l~~~~~~~~~-~~~~~~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~ 79 (207)
|.++.++.+++.++.. ...+..|+..|.|.| ...++|++..++++|..++++++.|++++|.++.+++..+. ++
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~---~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~--~l 75 (353)
T 2z80_A 1 MPHTLWMVWVLGVIISLSKEESSNQASLSCDR---NGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQ--RC 75 (353)
T ss_dssp --------------------------CCEECT---TSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTT--TC
T ss_pred CCceeHHHhhhhheeeccCccCCCccCCCCCC---CeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhc--cC
Confidence 5544444444333332 344567899999997 34589999999999999999999999999999999998887 89
Q ss_pred CcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccc-cccCCCCCccEEe
Q psy14766 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISS-YSFQSTPGIRYID 156 (207)
Q Consensus 80 ~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~ 156 (207)
++|+.|++++|.++.+.+..|.++++|+.|++++|.++.++...+ +++|++|++++|++..++. ..+..+++|++|+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~ 155 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence 999999999999999988899999999999999999998888654 8899999999999998887 6788999999999
Q ss_pred cCCC-ceeeeccccCCCCCCccEEEeCCCCCCCCCCchhhhhcccccCc
Q psy14766 157 MSNC-QIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAKGRAHD 204 (207)
Q Consensus 157 L~~n-~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~~~~~~ 204 (207)
+++| .+..+++..+.++++|+.|++++|.+.+..+..+..+++++.+.
T Consensus 156 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 204 (353)
T 2z80_A 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204 (353)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeec
Confidence 9998 58888888899999999999999999988788887777666554
No 13
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.94 E-value=1.7e-25 Score=168.30 Aligned_cols=164 Identities=25% Similarity=0.454 Sum_probs=151.4
Q ss_pred cCCCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhh
Q psy14766 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF 100 (207)
Q Consensus 21 ~~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f 100 (207)
......|.|.| +.++|++.++..+|..++++++.|++++|.++++++..+. ++++|+.|++++|+++.+++..|
T Consensus 11 ~~~~~~~~Cs~----~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~N~l~~i~~~~~ 84 (229)
T 3e6j_A 11 AACPSQCSCSG----TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFD--SLINLKELYLGSNQLGALPVGVF 84 (229)
T ss_dssp CCCCTTCEEET----TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCCCCEEeC----CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhh--CccCCcEEECCCCCCCCcChhhc
Confidence 45567899995 7899999999999999999999999999999999988888 78999999999999999988899
Q ss_pred cCCCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccE
Q psy14766 101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRR 178 (207)
Q Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 178 (207)
.++++|+.|++++|.++.++...+ +++|+.|++++|+++.++. .+..+++|++|++++|+++.+++..+..+++|+.
T Consensus 85 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 85 DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163 (229)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCT-TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCc-ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 999999999999999999988766 8999999999999998865 4788999999999999999999888999999999
Q ss_pred EEeCCCCCCCCCC
Q psy14766 179 PTITGQWKPRQNE 191 (207)
Q Consensus 179 l~l~~n~l~~~~~ 191 (207)
|++.+|++.+.++
T Consensus 164 L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 164 AYLFGNPWDCECR 176 (229)
T ss_dssp EECTTSCBCTTBG
T ss_pred EEeeCCCccCCcc
Confidence 9999999997664
No 14
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=4.7e-25 Score=171.44 Aligned_cols=177 Identities=17% Similarity=0.244 Sum_probs=144.4
Q ss_pred CCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCC
Q psy14766 25 LGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104 (207)
Q Consensus 25 ~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~ 104 (207)
+.|.|......+.++|++++++.+|..+++.++.|++++|.++.+++..+. ++++|+.|++++|.++.+++. +.++
T Consensus 2 p~C~~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~--~~l~ 77 (290)
T 1p9a_G 2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQVD--GTLP 77 (290)
T ss_dssp CSSEEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEECC--SCCT
T ss_pred CcccccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhh--cCCCCCEEECCCCccCcccCC--CCCC
Confidence 458888777789999999999999999999999999999999999988887 789999999999999888543 6778
Q ss_pred CCCEEEcCCCCCCCcCCccc-ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCC
Q psy14766 105 NMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183 (207)
Q Consensus 105 ~L~~L~l~~n~l~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~ 183 (207)
+|+.|++++|.++.+|.... +++|+.|++++|+++.+++..|..+++|++|++++|+++.+++..+..+++|+.|++++
T Consensus 78 ~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 78 VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp TCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 88888888888887776544 77888888888888887777777788888888888888888777777777888888888
Q ss_pred CCCCCCCCchhhhhcccccCcC
Q psy14766 184 QWKPRQNEDSDAQLAKGRAHDF 205 (207)
Q Consensus 184 n~l~~~~~~~~~~l~~~~~~~~ 205 (207)
|+++..++..+..+++++.+.+
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEEC
T ss_pred CcCCccCHHHhcCcCCCCEEEC
Confidence 8887777666666666555443
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1.2e-25 Score=175.76 Aligned_cols=177 Identities=18% Similarity=0.366 Sum_probs=125.6
Q ss_pred CCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeC--chh-
Q psy14766 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD--DRA- 99 (207)
Q Consensus 23 cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~- 99 (207)
||+.|.|.| +.++|++.+++++|..++++++.|++++|.++.++...+. ++++|++|++++|.++.+. +..
T Consensus 1 CP~~C~C~~----~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~ 74 (306)
T 2z66_A 1 CPSRCSCSG----TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFD--KLTQLTKLSLSSNGLSFKGCCSQSD 74 (306)
T ss_dssp CCTTCEEET----TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCEEEEEEHHH
T ss_pred CcCCCeeCC----CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhh--ccccCCEEECCCCccCcccCccccc
Confidence 999999995 6899999999999999999999999999999999988877 6788888888888776442 233
Q ss_pred ----------------------hcCCCCCCEEEcCCCCCCCcCC-ccc--ccccceeeccCCccccccccccCCCCCccE
Q psy14766 100 ----------------------FRGVTNMDELDLSDNLLSTVPS-LIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRY 154 (207)
Q Consensus 100 ----------------------f~~l~~L~~L~l~~n~l~~~~~-~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 154 (207)
|..+++|+.|++++|.++.++. ..+ +++|+.|++++|.+....+..+..+++|++
T Consensus 75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 4444455555555555444433 222 566666666666666666656666677777
Q ss_pred EecCCCceee-eccccCCCCCCccEEEeCCCCCCCCCCchhhhhcccccCcC
Q psy14766 155 IDMSNCQIHT-IYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAKGRAHDF 205 (207)
Q Consensus 155 L~L~~n~i~~-~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~~~~~~~ 205 (207)
|++++|.+++ ..+..+..+++|+.|++++|.+++..+..+..+++++.+.+
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence 7777777765 34455667777777777777777666666666666655543
No 16
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.93 E-value=1.5e-25 Score=169.48 Aligned_cols=161 Identities=16% Similarity=0.308 Sum_probs=117.4
Q ss_pred cCCCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCc-ceeeCchh
Q psy14766 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRA 99 (207)
Q Consensus 21 ~~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~ 99 (207)
..||+.|.|.+ .....++|.+ ++++|. ++.+++.|++++|.++.+++..+. ++++|++|++++|. ++.+++..
T Consensus 2 ~~cp~~C~C~~-~~~~~v~c~~--l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~ 75 (239)
T 2xwt_C 2 GCSSPPCECHQ-EEDFRVTCKD--IQRIPS-LPPSTQTLKLIETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHS 75 (239)
T ss_dssp -CCSSSCSEEE-CSTTEEEECS--CSSCCC-CCTTCCEEEEESCCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTT
T ss_pred CCCCCCCeeCC-CCcceeEccC--ccccCC-CCCcccEEEEeCCcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhH
Confidence 57999999984 1246688987 889998 888999999999999998888887 78889999999986 88888888
Q ss_pred hcCCCCCCEEEcCC-CCCCCcCCccc--ccccceeeccCCccccccccccCCCCCcc---EEecCCC-ceeeeccccCCC
Q psy14766 100 FRGVTNMDELDLSD-NLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIR---YIDMSNC-QIHTIYSEAFYG 172 (207)
Q Consensus 100 f~~l~~L~~L~l~~-n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~---~L~L~~n-~i~~~~~~~~~~ 172 (207)
|.++++|+.|++++ |.++.++...+ +++|+.|++++|+++.++. +..+++|+ +|++++| .++.+++..+.+
T Consensus 76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~ 153 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153 (239)
T ss_dssp EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccc
Confidence 88888888888887 88887776655 6777777777776666543 44445554 5555555 555555554555
Q ss_pred CCCcc-EEEeCCCCCCCC
Q psy14766 173 SDQIR-RPTITGQWKPRQ 189 (207)
Q Consensus 173 l~~L~-~l~l~~n~l~~~ 189 (207)
+++|+ .+++++|.++..
T Consensus 154 l~~L~~~L~l~~n~l~~i 171 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFTSV 171 (239)
T ss_dssp TBSSEEEEECCSCCCCEE
T ss_pred hhcceeEEEcCCCCCccc
Confidence 55555 555555555433
No 17
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=8.2e-24 Score=167.18 Aligned_cols=139 Identities=28% Similarity=0.541 Sum_probs=120.6
Q ss_pred hhccCCCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCc
Q psy14766 18 VTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97 (207)
Q Consensus 18 ~~~~~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 97 (207)
.....||..|.|. .+.++|++..++.+|..+++.++.|++++|.++.+++..+. ++++|++|++++|.++.+.+
T Consensus 22 ~~~~~cp~~c~c~----l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~ 95 (332)
T 2ft3_A 22 TYSAMCPFGCHCH----LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFK--GLQHLYALVLVNNKISKIHE 95 (332)
T ss_dssp ---CCCCSSCEEE----TTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECG
T ss_pred cccCCCCCCCccc----CCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhh--CCCCCcEEECCCCccCccCH
Confidence 3457899999998 47899999999999999999999999999999999988887 89999999999999999999
Q ss_pred hhhcCCCCCCEEEcCCCCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCcee
Q psy14766 98 RAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163 (207)
Q Consensus 98 ~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~ 163 (207)
..|+++++|+.|++++|.++.+|...+ ++|+.|++++|.+..+++..+..+++|++|++++|.++
T Consensus 96 ~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 96 KAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp GGSTTCTTCCEEECCSSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred hHhhCcCCCCEEECCCCcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 999999999999999999998887655 77888888888888777766777777777777777664
No 18
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=4.4e-24 Score=164.58 Aligned_cols=173 Identities=17% Similarity=0.327 Sum_probs=156.0
Q ss_pred CCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCC
Q psy14766 25 LGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104 (207)
Q Consensus 25 ~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~ 104 (207)
++|.|... ...++|.+..+.++|..++++++.|++++|.++.+++..+. ++++|++|++++|.++.+++..|.+++
T Consensus 1 ~~C~~~~~--~~~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~ 76 (276)
T 2z62_A 1 EPCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLS 76 (276)
T ss_dssp CCSEEEET--TTEEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTT--TCTTCSEEECTTCCCCEECTTTTTTCT
T ss_pred CCceeccC--CceEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhc--cccCCcEEECCCCcCCccCHHHccCCc
Confidence 47888752 35799999999999999999999999999999999988887 789999999999999999988999999
Q ss_pred CCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeec-cccCCCCCCccEEEe
Q psy14766 105 NMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY-SEAFYGSDQIRRPTI 181 (207)
Q Consensus 105 ~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~l~l 181 (207)
+|+.|++++|.++.++...+ +++|+.|++++|.+..+++..+..+++|++|++++|.++++. +..+.++++|+.|++
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence 99999999999998876655 899999999999999998877999999999999999999864 567889999999999
Q ss_pred CCCCCCCCCCchhhhhcccc
Q psy14766 182 TGQWKPRQNEDSDAQLAKGR 201 (207)
Q Consensus 182 ~~n~l~~~~~~~~~~l~~~~ 201 (207)
++|.+++..+..+..+.+.+
T Consensus 157 s~N~l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 157 SSNKIQSIYCTDLRVLHQMP 176 (276)
T ss_dssp CSSCCCEECGGGGHHHHTCT
T ss_pred CCCCCCcCCHHHhhhhhhcc
Confidence 99999988888888777665
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=2.8e-24 Score=182.11 Aligned_cols=177 Identities=17% Similarity=0.259 Sum_probs=156.6
Q ss_pred cCCCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhh
Q psy14766 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF 100 (207)
Q Consensus 21 ~~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f 100 (207)
..|+..|.|.. ....++|++.+++++|..++..++.|++++|.++++++..+. ++++|++|++++|.++.+.+..|
T Consensus 2 ~~~~~~C~~~~--~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~ 77 (606)
T 3t6q_A 2 TSSDQKCIEKE--VNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFS--RLINLTFLDLTRCQIYWIHEDTF 77 (606)
T ss_dssp ----CCCEEEE--TTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTST--TCTTCSEEECTTCCCCEECTTTT
T ss_pred ccccCceeccc--CCceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhc--cCccceEEECCCCccceeChhhc
Confidence 47899999985 346899999999999999999999999999999999988888 89999999999999999999999
Q ss_pred cCCCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccE
Q psy14766 101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRR 178 (207)
Q Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 178 (207)
+++++|++|++++|.++.+++..+ +++|++|++++|.+..+.+..+..+++|++|++++|.+++++...+..+++|+.
T Consensus 78 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 157 (606)
T 3t6q_A 78 QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157 (606)
T ss_dssp TTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCE
T ss_pred cCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCE
Confidence 999999999999999997766555 899999999999999987778999999999999999999986545566899999
Q ss_pred EEeCCCCCCCCCCchhhhhcccc
Q psy14766 179 PTITGQWKPRQNEDSDAQLAKGR 201 (207)
Q Consensus 179 l~l~~n~l~~~~~~~~~~l~~~~ 201 (207)
|++++|.+++..++.+..+.+++
T Consensus 158 L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 158 LDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp EECCSSCCCEECHHHHHTTTTCC
T ss_pred EEcccCcccccChhhhhhhcccc
Confidence 99999999988888888887766
No 20
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.91 E-value=1.2e-23 Score=154.17 Aligned_cols=137 Identities=20% Similarity=0.417 Sum_probs=122.7
Q ss_pred cCCCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhh
Q psy14766 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF 100 (207)
Q Consensus 21 ~~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f 100 (207)
..||..|.|. .+.++|++++++++|..++++++.|++++|.++.++ ..+. ++++|+.|++++|.++.+++..|
T Consensus 2 ~~CP~~C~C~----~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip-~~~~--~l~~L~~L~Ls~N~i~~i~~~~f 74 (193)
T 2wfh_A 2 SRCPTECTCL----DTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVP-KELS--NYKHLTLIDLSNNRISTLSNQSF 74 (193)
T ss_dssp --CCTTCEEE----TTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCC-GGGG--GCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCCCCEeC----CCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhH-HHhh--cccCCCEEECCCCcCCEeCHhHc
Confidence 5799999998 478999999999999999999999999999999888 4555 78999999999999999998899
Q ss_pred cCCCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceee
Q psy14766 101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT 164 (207)
Q Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 164 (207)
.++++|+.|++++|+++.++...+ +++|+.|++++|.++.+++..+..+++|+.|++++|.+..
T Consensus 75 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 999999999999999998887666 8899999999999999888888889999999999998864
No 21
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=1.9e-23 Score=164.92 Aligned_cols=162 Identities=23% Similarity=0.435 Sum_probs=131.9
Q ss_pred ccCCCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchh
Q psy14766 20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA 99 (207)
Q Consensus 20 ~~~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 99 (207)
...||..|.|. .+.++|++..++.+|..+++.++.|++++|.++.+++..+. .+++|++|++++|.++.+.+..
T Consensus 22 ~~~cp~~c~c~----l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~ 95 (330)
T 1xku_A 22 GPVCPFRCQCH----LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK--NLKNLHTLILINNKISKISPGA 95 (330)
T ss_dssp CCCCCTTCEEE----TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTTT
T ss_pred cCCCCCCCcCC----CeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhc--cCCCCCEEECCCCcCCeeCHHH
Confidence 46899999998 47899999999999999999999999999999999998887 8999999999999999998899
Q ss_pred hcCCCCCCEEEcCCCCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceee--eccccCCCCCCcc
Q psy14766 100 FRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT--IYSEAFYGSDQIR 177 (207)
Q Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~ 177 (207)
|+++++|+.|++++|.++.+|...+ ++|+.|++++|.+..+++..+..+++|++|++++|.+.. +.+..+.++++|+
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp TTTCTTCCEEECCSSCCSBCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred hcCCCCCCEEECCCCcCCccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 9999999999999999998877554 677888888888777776666667777777777776653 3344455555555
Q ss_pred EEEeCCCCCCC
Q psy14766 178 RPTITGQWKPR 188 (207)
Q Consensus 178 ~l~l~~n~l~~ 188 (207)
.|++++|.++.
T Consensus 175 ~L~l~~n~l~~ 185 (330)
T 1xku_A 175 YIRIADTNITT 185 (330)
T ss_dssp EEECCSSCCCS
T ss_pred EEECCCCcccc
Confidence 55555554443
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=1e-23 Score=172.91 Aligned_cols=171 Identities=18% Similarity=0.269 Sum_probs=146.5
Q ss_pred ccCCCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcce-eeCch
Q psy14766 20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE-FVDDR 98 (207)
Q Consensus 20 ~~~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~ 98 (207)
+..||..|.|. ...++|++.+++.+|. +++++++|++++|.++++++..+. ++++|++|++++|.+. .+++.
T Consensus 1 a~p~~~~c~~~----~~~~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~n~~~~~i~~~ 73 (455)
T 3v47_A 1 ADPGTSECSVI----GYNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFS--RLQDLQFLKVEQQTPGLVIRNN 73 (455)
T ss_dssp ------CCEEE----TTEEECCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTS--SCTTCCEEECCCCSTTCEECTT
T ss_pred CCCccceeEEE----ccccCcCCCCcccCCC-CCCccCEEEecCCccCcCChhHhc--cCccccEEECcCCcccceECcc
Confidence 35789999998 5789999999999999 889999999999999999888888 8999999999999986 77788
Q ss_pred hhcCCCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccc--cccCCCCCccEEecCCCceeeecccc-CCCC
Q psy14766 99 AFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISS--YSFQSTPGIRYIDMSNCQIHTIYSEA-FYGS 173 (207)
Q Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l 173 (207)
.|.++++|++|++++|.++.+++..+ +++|++|++++|.+++..+ ..+..+++|++|++++|.++++.+.. +.++
T Consensus 74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 153 (455)
T 3v47_A 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153 (455)
T ss_dssp TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC
T ss_pred cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC
Confidence 99999999999999999997755444 8999999999999987433 44888999999999999999986554 7889
Q ss_pred CCccEEEeCCCCCCCCCCchhhhh
Q psy14766 174 DQIRRPTITGQWKPRQNEDSDAQL 197 (207)
Q Consensus 174 ~~L~~l~l~~n~l~~~~~~~~~~l 197 (207)
++|+.|++++|.+.+..+..+..+
T Consensus 154 ~~L~~L~L~~n~l~~~~~~~l~~l 177 (455)
T 3v47_A 154 RRFHVLDLTFNKVKSICEEDLLNF 177 (455)
T ss_dssp TTCCEEECTTCCBSCCCTTTSGGG
T ss_pred CcccEEeCCCCcccccChhhhhcc
Confidence 999999999999998877776655
No 23
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.90 E-value=2.6e-23 Score=152.25 Aligned_cols=138 Identities=26% Similarity=0.517 Sum_probs=121.8
Q ss_pred CCCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchh-hhhhcCCCcceEEEecCCcceeeCchhh
Q psy14766 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKE-IFLQMGITNIQKLYLRKCKLEFVDDRAF 100 (207)
Q Consensus 22 ~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~f 100 (207)
+||..|.|.| +.++|++++++++|..++.+++.|++++|.++.+++. .+. .+++|++|++++|.++.+.+..|
T Consensus 1 ~CP~~C~C~~----~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~ 74 (192)
T 1w8a_A 1 DCPAMCHCEG----TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFG--RLPHLVKLELKRNQLTGIEPNAF 74 (192)
T ss_dssp CCCTTSEEET----TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGG--GCTTCCEEECCSSCCCCBCTTTT
T ss_pred CcCCCCEECC----CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccc--cCCCCCEEECCCCCCCCcCHhHc
Confidence 5999999995 7899999999999999988999999999999988875 466 78999999999999999988899
Q ss_pred cCCCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeee
Q psy14766 101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165 (207)
Q Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~ 165 (207)
.++++|+.|++++|+++.++...+ +++|+.|++++|+++++.+..+..+++|++|++++|.++..
T Consensus 75 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 999999999999999988777655 78888888888888888777788888888888888887643
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=2.8e-23 Score=176.06 Aligned_cols=174 Identities=17% Similarity=0.323 Sum_probs=155.0
Q ss_pred CCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCC
Q psy14766 24 PLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103 (207)
Q Consensus 24 p~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l 103 (207)
..+|.|.. ....++|++.+++.+|..++++++.|++++|.++++++..+. ++++|++|++++|.++.+.+..|.++
T Consensus 4 ~~~c~~~~--~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~i~~~~~~~l 79 (606)
T 3vq2_A 4 LNPCIEVV--PNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFS--NFSELQWLDLSRCEIETIEDKAWHGL 79 (606)
T ss_dssp --CCEEEE--TTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CCCceecC--CCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhcc--CCccCcEEeCCCCcccccCHHHhhch
Confidence 34577753 346899999999999999999999999999999999998888 89999999999999999999999999
Q ss_pred CCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeec-cccCCCCCCccEEE
Q psy14766 104 TNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY-SEAFYGSDQIRRPT 180 (207)
Q Consensus 104 ~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~l~ 180 (207)
++|++|++++|.++.+++..+ +++|++|++++|.+..+++..++.+++|++|++++|.++++. +..+.++++|+.|+
T Consensus 80 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~ 159 (606)
T 3vq2_A 80 HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159 (606)
T ss_dssp TTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEE
T ss_pred hhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEE
Confidence 999999999999998855555 999999999999999998878999999999999999999744 56789999999999
Q ss_pred eCCCCCCCCCCchhhhhcccc
Q psy14766 181 ITGQWKPRQNEDSDAQLAKGR 201 (207)
Q Consensus 181 l~~n~l~~~~~~~~~~l~~~~ 201 (207)
+++|.+++..+..+..+.+.+
T Consensus 160 Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 160 LSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp CCSSCCCEECTTTTHHHHHCT
T ss_pred ccCCcceecChhhhhhhhccc
Confidence 999999998888887776554
No 25
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.90 E-value=7.2e-23 Score=147.89 Aligned_cols=137 Identities=24% Similarity=0.467 Sum_probs=113.9
Q ss_pred CCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcC
Q psy14766 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102 (207)
Q Consensus 23 cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~ 102 (207)
||..|.|.| +.++|++.+++.+|..++++++.|++++|.++++++..+. .+++|++|++++|.++.+++..|.+
T Consensus 1 Cp~~C~C~~----~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (177)
T 2o6r_A 1 CPSRCSCSG----TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFD--KLTQLTKLSLSQNQIQSLPDGVFDK 74 (177)
T ss_dssp CCTTCEEET----TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CcCCCEeCC----CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhc--CcccccEEECCCCcceEeChhHccC
Confidence 999999984 7899999999999998888999999999999988888777 7888999999999988888777888
Q ss_pred CCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeee
Q psy14766 103 VTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165 (207)
Q Consensus 103 l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~ 165 (207)
+++|+.|++++|.++.++...+ +++|+.|++++|.++.+++..+..+++|++|++++|.+...
T Consensus 75 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 8888888888888887776554 67777777777777777766666777777777777776654
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=4.8e-23 Score=176.80 Aligned_cols=165 Identities=14% Similarity=0.254 Sum_probs=148.6
Q ss_pred CCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCC
Q psy14766 26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN 105 (207)
Q Consensus 26 ~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~ 105 (207)
.|.|. ...++|++.+++++|..++++++.|++++|.++++++..+. ++++|++|++++|.++.+.+..|+++++
T Consensus 1 ~C~~~----~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 74 (680)
T 1ziw_A 1 KCTVS----HEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFT--RYSQLTSLDVGFNTISKLEPELCQKLPM 74 (680)
T ss_dssp ---CB----SSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGG--GGTTCSEEECCSSCCCCCCTTHHHHCTT
T ss_pred CceeE----CCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHh--CCCcCcEEECCCCccCccCHHHHhcccC
Confidence 47787 47899999999999999999999999999999999998888 7899999999999999999999999999
Q ss_pred CCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCC
Q psy14766 106 MDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183 (207)
Q Consensus 106 L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~ 183 (207)
|+.|++++|.++.+|...+ +++|++|++++|.+..+++..+..+++|++|++++|.++++++..+.++++|+.|++++
T Consensus 75 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS
T ss_pred cCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC
Confidence 9999999999999988655 89999999999999999888899999999999999999998888888999999999999
Q ss_pred CCCCCCCCchhhh
Q psy14766 184 QWKPRQNEDSDAQ 196 (207)
Q Consensus 184 n~l~~~~~~~~~~ 196 (207)
|.+++..+..+..
T Consensus 155 n~l~~~~~~~~~~ 167 (680)
T 1ziw_A 155 NKIQALKSEELDI 167 (680)
T ss_dssp SCCCCBCHHHHGG
T ss_pred CcccccCHHHhhc
Confidence 9998877665543
No 27
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.1e-22 Score=154.78 Aligned_cols=169 Identities=18% Similarity=0.317 Sum_probs=127.9
Q ss_pred CeeEEecCCCCcccCCCCC---CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEc
Q psy14766 35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~---~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l 111 (207)
.+.++.+++.+..+|.... +++++|++++|.++.+++..|. ++++|++|++++|.++.+++..|.++++|+.|++
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK--ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTS--SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhc--CCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 5677888888888776322 5788888888888888877776 6788888888888888887777788888888888
Q ss_pred CCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCC
Q psy14766 112 SDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQ 189 (207)
Q Consensus 112 ~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~ 189 (207)
++|.++.++...+ +++|+.|++++|.+..+++..+..+++|++|++++|.++.+++..+.++++|+.|++++|.++..
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 8888877776555 77788888888888777776677777888888888888777777777777788888888877776
Q ss_pred CCchhhhhcccccCcC
Q psy14766 190 NEDSDAQLAKGRAHDF 205 (207)
Q Consensus 190 ~~~~~~~l~~~~~~~~ 205 (207)
.+..+..+++++.+.+
T Consensus 197 ~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQL 212 (270)
T ss_dssp CTTTTTTCTTCCEEEC
T ss_pred CHHHhccccCCCEEEe
Confidence 6666666666555544
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=8.6e-23 Score=171.66 Aligned_cols=172 Identities=17% Similarity=0.328 Sum_probs=155.7
Q ss_pred CCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCC
Q psy14766 25 LGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104 (207)
Q Consensus 25 ~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~ 104 (207)
+.|.|.. ....++|++.+++++|..++..++.|++++|.++.+++..+. ++++|+.|++++|.++.+++..|++++
T Consensus 1 ~~c~~~~--~~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~~~~~l~ 76 (570)
T 2z63_A 1 EPCVEVV--PNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLS 76 (570)
T ss_dssp CCSEEEE--TTTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTT--TCSSCCEEECTTCCCCEECTTTTTTCT
T ss_pred CCccccC--CCcEEEeCCCCccccCCCccccccEEEccCCccCccChhHhh--CCCCceEEECCCCcCCccCcccccCch
Confidence 3688874 356799999999999999999999999999999999998888 899999999999999999999999999
Q ss_pred CCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeec-cccCCCCCCccEEEe
Q psy14766 105 NMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY-SEAFYGSDQIRRPTI 181 (207)
Q Consensus 105 ~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~l~l 181 (207)
+|+.|++++|.++.++...+ +++|++|++++|.+..+++..++.+++|++|++++|.++++. +..+.++++|+.|++
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l 156 (570)
T 2z63_A 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (570)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred hCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeC
Confidence 99999999999998887666 899999999999999998877999999999999999999854 567889999999999
Q ss_pred CCCCCCCCCCchhhhhccc
Q psy14766 182 TGQWKPRQNEDSDAQLAKG 200 (207)
Q Consensus 182 ~~n~l~~~~~~~~~~l~~~ 200 (207)
++|.+++..+..+..+.++
T Consensus 157 ~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 157 SSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TTSCCCEECGGGGHHHHTC
T ss_pred cCCccceecHHHccchhcc
Confidence 9999998888888777665
No 29
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=1.4e-22 Score=161.30 Aligned_cols=178 Identities=17% Similarity=0.293 Sum_probs=139.2
Q ss_pred CCCCC-CEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcc-eeeCchh
Q psy14766 22 SCPLG-CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFVDDRA 99 (207)
Q Consensus 22 ~cp~~-c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~ 99 (207)
.||.+ |.|. .+.++|++.+++++|..++++++.|++++|.|+.+++++|. ++++|++|++++|++ +.+++++
T Consensus 1 gCp~~~C~C~----~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~Ls~N~i~~~i~~~~ 74 (350)
T 4ay9_X 1 GCHHRICHCS----NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADV 74 (350)
T ss_dssp -CCCSSSEEE----TTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSST--TCTTCCEEEEECCTTCCEECTTS
T ss_pred CCCCCccEee----CCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHc--CCCCCCEEECcCCCCCCccChhH
Confidence 49976 9998 47899999999999999999999999999999999999998 899999999999987 5566678
Q ss_pred hcCCCCCCE-EEcCCCCCCCcCCccc--ccccceeeccCCcccccccc-------------------------ccCCC-C
Q psy14766 100 FRGVTNMDE-LDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSY-------------------------SFQST-P 150 (207)
Q Consensus 100 f~~l~~L~~-L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~-------------------------~~~~l-~ 150 (207)
|.+++++.. +.+..|+++.++...+ +++|+.|++++|++..+++. .+..+ .
T Consensus 75 f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~ 154 (350)
T 4ay9_X 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 154 (350)
T ss_dssp BCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS
T ss_pred hhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcch
Confidence 888887665 4555677887776665 77888888888777655442 22333 3
Q ss_pred CccEEecCCCceeeeccccCCCCCCccEEEeCC-CCCCCCCCchhhhhcccccCcCC
Q psy14766 151 GIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG-QWKPRQNEDSDAQLAKGRAHDFR 206 (207)
Q Consensus 151 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~-n~l~~~~~~~~~~l~~~~~~~~~ 206 (207)
.++.|++++|+|+.+++.++. ..+++.+++.+ |.+...+++.|..+++++.+.+.
T Consensus 155 ~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs 210 (350)
T 4ay9_X 155 ESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210 (350)
T ss_dssp SCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECT
T ss_pred hhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcC
Confidence 577788888888888877664 35688888864 67777777778888777766553
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=8.5e-23 Score=171.13 Aligned_cols=171 Identities=25% Similarity=0.384 Sum_probs=148.9
Q ss_pred CCCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhc
Q psy14766 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101 (207)
Q Consensus 22 ~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~ 101 (207)
+||..|.| +|++++++++|..+++.+++|++++|.++++++..+. ++++|++|++++|+++.++++.|.
T Consensus 3 ~C~~~~~c---------~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~ 71 (549)
T 2z81_A 3 SCDASGVC---------DGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLR--ACANLQVLILKSSRINTIEGDAFY 71 (549)
T ss_dssp EECTTSEE---------ECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTS--SCTTCCEEECTTSCCCEECTTTTT
T ss_pred cCCCCceE---------ECCCCccccccccCCCCccEEECcCCccCccChhhhh--cCCcccEEECCCCCcCccChhhcc
Confidence 46666666 5678899999999999999999999999999888887 899999999999999999989999
Q ss_pred CCCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCcccccc-ccccCCCCCccEEecCCCc-eeeeccccCCCCCCcc
Q psy14766 102 GVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYGSDQIR 177 (207)
Q Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~ 177 (207)
++++|++|++++|.++.++...+ +++|++|++++|.+..+. +..++.+++|++|++++|. +..+++..+.++++|+
T Consensus 72 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 151 (549)
T 2z81_A 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151 (549)
T ss_dssp TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred ccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccC
Confidence 99999999999999998887644 899999999999998753 3568899999999999998 7788877899999999
Q ss_pred EEEeCCCCCCCCCCchhhhhcccccC
Q psy14766 178 RPTITGQWKPRQNEDSDAQLAKGRAH 203 (207)
Q Consensus 178 ~l~l~~n~l~~~~~~~~~~l~~~~~~ 203 (207)
.|++++|.+++..+..+..+++++.+
T Consensus 152 ~L~L~~n~l~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 152 ELEIKALSLRNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred eeeccCCcccccChhhhhccccCceE
Confidence 99999999998777777766555443
No 31
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.6e-21 Score=148.31 Aligned_cols=154 Identities=20% Similarity=0.309 Sum_probs=142.4
Q ss_pred CCeeEEecCCCCcccCCCCC---CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEE
Q psy14766 34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (207)
Q Consensus 34 ~~~~~~c~~~~l~~~p~~~~---~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~ 110 (207)
..+.++.+++.+..++.... ++++.|++++|.++.+++..+. .+++|+.|++++|+++.+++..|..+++|+.|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD--DLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc--cCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 35789999999999887432 5899999999999999999887 789999999999999999999999999999999
Q ss_pred cCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCC
Q psy14766 111 LSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPR 188 (207)
Q Consensus 111 l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~ 188 (207)
+++|.++.++...+ +++|+.|++++|+++.+++..+..+++|++|++++|+++++++..+..+++|+.|++++|++.+
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 99999999988766 8999999999999999998889999999999999999999998889999999999999999987
Q ss_pred C
Q psy14766 189 Q 189 (207)
Q Consensus 189 ~ 189 (207)
.
T Consensus 194 ~ 194 (251)
T 3m19_A 194 S 194 (251)
T ss_dssp T
T ss_pred C
Confidence 6
No 32
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=1.7e-22 Score=160.95 Aligned_cols=198 Identities=14% Similarity=0.205 Sum_probs=154.1
Q ss_pred hHHHHHHHHHHHhhh---hccCCCCCCEeeec------------CCCeeEEecCCCCcccCCC-CC--CCceEEEeecCC
Q psy14766 4 KFILSVFLLTLLASV---TQASCPLGCSCKWK------------AGKRTVECIDRNFYTIPEG-ID--LDTQVLDLSSNN 65 (207)
Q Consensus 4 ~~~l~~~~~~~~~~~---~~~~cp~~c~c~~~------------~~~~~~~c~~~~l~~~p~~-~~--~~l~~L~ls~n~ 65 (207)
.+++.++++...... ....||..|.|+.. ...+.++.+++.++.+|.. +. ++++.|++++|.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 87 (353)
T 2z80_A 8 VWVLGVIISLSKEESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87 (353)
T ss_dssp -------------------CCEECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred HhhhhheeeccCccCCCccCCCCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc
Confidence 344444444333333 34688998888742 2356789999999999873 32 589999999999
Q ss_pred ccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCC-ccc--ccccceeeccCC-ccccc
Q psy14766 66 INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS-LIY--IPYLKSINLAHN-PIHQI 141 (207)
Q Consensus 66 i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~-~~~--~~~L~~L~l~~n-~i~~~ 141 (207)
++++++..+. ++++|++|++++|+++.+++..|+++++|+.|++++|.++.++. ..+ +++|+.|++++| .+..+
T Consensus 88 l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~ 165 (353)
T 2z80_A 88 INTIEEDSFS--SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165 (353)
T ss_dssp CCEECTTTTT--TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred cCccCHhhcC--CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc
Confidence 9999988887 78999999999999999988889999999999999999998887 444 899999999999 58888
Q ss_pred cccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCchhhhhcccccC
Q psy14766 142 SSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAKGRAH 203 (207)
Q Consensus 142 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~~~~~ 203 (207)
++..+..+++|++|++++|.++++.+..+..+++|+.|++++|.+....+..+..+++++.+
T Consensus 166 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 227 (353)
T 2z80_A 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227 (353)
T ss_dssp CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEE
T ss_pred CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEE
Confidence 88889999999999999999999988889999999999999998876554444445544443
No 33
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=1.2e-21 Score=151.58 Aligned_cols=167 Identities=16% Similarity=0.239 Sum_probs=97.2
Q ss_pred CeeEEecCCCCcccCCCCC---CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCc-ceeeCchhhcCCCCCCEEE
Q psy14766 35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRAFRGVTNMDELD 110 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~---~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~f~~l~~L~~L~ 110 (207)
.+.++.++..++.+|.... ++++.|++++|.++++.+..+. ++++|++|++++|. ++.+.+..|..+++|+.|+
T Consensus 34 l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT--GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred ceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcC--CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 4566777777777664322 4667777777766666655555 56666666666665 6666555666666666666
Q ss_pred cCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCC
Q psy14766 111 LSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPR 188 (207)
Q Consensus 111 l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~ 188 (207)
+++|.++.++...+ +++|+.|++++|++..+++..+..+++|++|++++|.++++++..+.++++|+.|++++|.+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 66666655544333 5556666666666655555555555555555555555555555445555555555555555555
Q ss_pred CCCchhhhhcccccC
Q psy14766 189 QNEDSDAQLAKGRAH 203 (207)
Q Consensus 189 ~~~~~~~~l~~~~~~ 203 (207)
..+..+..+++++.+
T Consensus 192 ~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTL 206 (285)
T ss_dssp ECTTTTTTCTTCCEE
T ss_pred cCHhHccCcccccEe
Confidence 444444444444433
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=3.3e-22 Score=168.28 Aligned_cols=173 Identities=16% Similarity=0.181 Sum_probs=140.0
Q ss_pred hhccCCCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCc
Q psy14766 18 VTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97 (207)
Q Consensus 18 ~~~~~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 97 (207)
.....++..|.|.. .+.++|++++++.+|..++++++.|++++|.++++++..+. ++++|++|++++|.++.+.+
T Consensus 19 ~~~~~~~~~~~~~~---~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~ 93 (562)
T 3a79_B 19 ALIVGSMTPFSNEL---ESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDIS--FLSELRVLRLSHNRIRSLDF 93 (562)
T ss_dssp -----------------CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTT--TCTTCCEEECCSCCCCEECT
T ss_pred HHHhccccccccCC---CcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhc--cCCCccEEECCCCCCCcCCH
Confidence 33455666677774 37899999999999999999999999999999999998888 89999999999999999999
Q ss_pred hhhcCCCCCCEEEcCCCCCCCcCCcccccccceeeccCCcccccc-ccccCCCCCccEEecCCCceeeeccccCCCCCCc
Q psy14766 98 RAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQI 176 (207)
Q Consensus 98 ~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 176 (207)
+.|.++++|++|++++|.++.+|.. .+++|++|++++|.+..++ +..++.+++|++|++++|.++...-..+.++ +|
T Consensus 94 ~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L 171 (562)
T 3a79_B 94 HVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HL 171 (562)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CE
T ss_pred HHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-ee
Confidence 9999999999999999999998887 7899999999999999876 3679999999999999999987443333333 44
Q ss_pred cEEEeCCCCC--CCCCCchhhhh
Q psy14766 177 RRPTITGQWK--PRQNEDSDAQL 197 (207)
Q Consensus 177 ~~l~l~~n~l--~~~~~~~~~~l 197 (207)
+.+++++|.+ ++..+..+..+
T Consensus 172 ~~L~L~~n~l~~~~~~~~~l~~l 194 (562)
T 3a79_B 172 SCILLDLVSYHIKGGETESLQIP 194 (562)
T ss_dssp EEEEEEESSCCCCSSSCCEEEEC
T ss_pred eEEEeecccccccccCccccccc
Confidence 9999999999 77666666553
No 35
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=2.7e-21 Score=148.78 Aligned_cols=163 Identities=18% Similarity=0.276 Sum_probs=76.1
Q ss_pred eeEEecCCCCcccCC-CCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCC
Q psy14766 36 RTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114 (207)
Q Consensus 36 ~~~~c~~~~l~~~p~-~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n 114 (207)
+.+.+.+..++.++. ...++++.|++++|.++.++ .+. .+++|++|++++|.++.+++..|.++++|+.|++++|
T Consensus 44 ~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 119 (272)
T 3rfs_A 44 DQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALK--ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119 (272)
T ss_dssp CEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred eeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhc--CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC
Confidence 344444444444432 11234555555555544432 222 3444555555555555444444445555555555555
Q ss_pred CCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCc
Q psy14766 115 LLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNED 192 (207)
Q Consensus 115 ~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~ 192 (207)
.++.++...+ +++|+.|++++|.++.+++..+..+++|++|++++|.++++++..+..+++|+.|++++|.+++..+.
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (272)
T 3rfs_A 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG 199 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH
Confidence 5444444332 44455555555555444444444445555555555555544444444444555555555555444444
Q ss_pred hhhhhccccc
Q psy14766 193 SDAQLAKGRA 202 (207)
Q Consensus 193 ~~~~l~~~~~ 202 (207)
.+..+++++.
T Consensus 200 ~~~~l~~L~~ 209 (272)
T 3rfs_A 200 VFDRLTSLQY 209 (272)
T ss_dssp TTTTCTTCCE
T ss_pred HHhCCcCCCE
Confidence 4444444433
No 36
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=4.1e-21 Score=168.64 Aligned_cols=171 Identities=20% Similarity=0.182 Sum_probs=149.3
Q ss_pred CCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCC-cceeeCchhhcCCC
Q psy14766 26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDDRAFRGVT 104 (207)
Q Consensus 26 ~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~f~~l~ 104 (207)
.|.|. ...++|++++++.+|. ++++++.|++++|.++.+.+..+. ++++|+.|++++| .+..++++.|++++
T Consensus 1 ~C~~~----~~~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~--~l~~L~~LdLs~n~~~~~i~~~~f~~L~ 73 (844)
T 3j0a_A 1 SCSFD----GRIAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFP--FLEQLQLLELGSQYTPLTIDKEAFRNLP 73 (844)
T ss_dssp CCBTT----TEEEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCS--SCCSCSEEEECTTCCCCEECTTTTSSCT
T ss_pred CceEe----ceEEEccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCc--ccccCeEEeCCCCCCccccCHHHhcCCC
Confidence 37776 5899999999999999 889999999999999999888888 8999999999999 56778788999999
Q ss_pred CCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccc--cccCCCCCccEEecCCCceeeecc-ccCCCCCCccEE
Q psy14766 105 NMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISS--YSFQSTPGIRYIDMSNCQIHTIYS-EAFYGSDQIRRP 179 (207)
Q Consensus 105 ~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~l 179 (207)
+|+.|++++|.++.+++..+ +++|++|++++|.+.+..+ ..+..+++|++|++++|.++++.+ ..++++++|+.|
T Consensus 74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence 99999999999998755555 8999999999999987433 348899999999999999998764 578999999999
Q ss_pred EeCCCCCCCCCCchhhhh--cccccC
Q psy14766 180 TITGQWKPRQNEDSDAQL--AKGRAH 203 (207)
Q Consensus 180 ~l~~n~l~~~~~~~~~~l--~~~~~~ 203 (207)
++++|.+++..++.+..+ ++++.+
T Consensus 154 ~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 154 DFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp EEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred ECCCCcCCeeCHHHcccccCCccceE
Confidence 999999999888888776 444433
No 37
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=1.2e-20 Score=145.09 Aligned_cols=156 Identities=17% Similarity=0.249 Sum_probs=141.8
Q ss_pred CCeeEEecCCCCcccCC-CCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcC
Q psy14766 34 GKRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (207)
Q Consensus 34 ~~~~~~c~~~~l~~~p~-~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~ 112 (207)
..+.++.+++.++.++. .-.+++++|++++|.++++++..+. .+++|++|++++|+++.+++..|.++++|+.|+++
T Consensus 64 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 64 NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFD--KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141 (272)
T ss_dssp TCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhc--CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECC
Confidence 46789999988888763 2236899999999999999998887 78999999999999999988889999999999999
Q ss_pred CCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCC
Q psy14766 113 DNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQN 190 (207)
Q Consensus 113 ~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~ 190 (207)
+|.++.++...+ +++|+.|++++|+++++++..+..+++|++|++++|.++++++..+..+++|+.|++++|++.+..
T Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC
Confidence 999998888765 899999999999999999888899999999999999999999888999999999999999998776
Q ss_pred C
Q psy14766 191 E 191 (207)
Q Consensus 191 ~ 191 (207)
+
T Consensus 222 ~ 222 (272)
T 3rfs_A 222 P 222 (272)
T ss_dssp T
T ss_pred c
Confidence 5
No 38
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=1.5e-20 Score=153.82 Aligned_cols=169 Identities=21% Similarity=0.262 Sum_probs=118.9
Q ss_pred CeeEEecCCCCcccCCCC---CCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCch-------------
Q psy14766 35 KRTVECIDRNFYTIPEGI---DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR------------- 98 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~---~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~------------- 98 (207)
.+.++.+++.+..++... .++++.|++++|.++.+++..+. .+++|++|++++|.++.+++.
T Consensus 90 L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l 167 (440)
T 3zyj_A 90 LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV--YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167 (440)
T ss_dssp CCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSC--SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhh--ccccCceeeCCCCcccccCHHHhhhCcccCEeCC
Confidence 456677777777666422 24677777777777776666665 566666666666666655544
Q ss_pred ------------hhcCCCCCCEEEcCCCCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeec
Q psy14766 99 ------------AFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166 (207)
Q Consensus 99 ------------~f~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 166 (207)
.|.++++|+.|++++|.++.+|....+++|+.|++++|.++.+.+..+..+++|+.|++++|+++.++
T Consensus 168 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 247 (440)
T 3zyj_A 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247 (440)
T ss_dssp CCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC
Confidence 45555566666666666666654333667778888888888877777888888888888888888888
Q ss_pred cccCCCCCCccEEEeCCCCCCCCCCchhhhhcccccCcC
Q psy14766 167 SEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAKGRAHDF 205 (207)
Q Consensus 167 ~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~~~~~~~ 205 (207)
+..+.++++|+.|++++|.++...++.+..+++++.+.+
T Consensus 248 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEEC
T ss_pred hhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEc
Confidence 888888888888888888888887777777776666554
No 39
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=2.3e-20 Score=153.21 Aligned_cols=169 Identities=19% Similarity=0.229 Sum_probs=123.2
Q ss_pred CeeEEecCCCCcccCCCCC---CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhc----------
Q psy14766 35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR---------- 101 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~---~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~---------- 101 (207)
.+.++.+++.+..++.... ++++.|++++|.++.+++..+. ++++|++|++++|.++.+++..|.
T Consensus 101 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 178 (452)
T 3zyi_A 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE--YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178 (452)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS--SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhc--ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeC
Confidence 5667778888887765332 4788888888888888877776 677788888888777776655544
Q ss_pred ---------------CCCCCCEEEcCCCCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeec
Q psy14766 102 ---------------GVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166 (207)
Q Consensus 102 ---------------~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 166 (207)
++++|+.|++++|.++.+|....+++|+.|++++|.+.++.+..+..+++|+.|++++|+++.++
T Consensus 179 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 258 (452)
T 3zyi_A 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258 (452)
T ss_dssp CCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC
T ss_pred CCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC
Confidence 45555555555555555544323667777777777777777777888888888888888888887
Q ss_pred cccCCCCCCccEEEeCCCCCCCCCCchhhhhcccccCcC
Q psy14766 167 SEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAKGRAHDF 205 (207)
Q Consensus 167 ~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~~~~~~~ 205 (207)
+..+.++++|+.|++++|.++...++.+..+++++.+.+
T Consensus 259 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEEC
T ss_pred HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEc
Confidence 777888888888888888888777777777776666554
No 40
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=6.7e-21 Score=143.80 Aligned_cols=169 Identities=15% Similarity=0.233 Sum_probs=133.8
Q ss_pred CCeeEEecCCCCcccCCCCC---CCceEEEeecCC-ccccchhhhhhcCCCcceEEEecC-CcceeeCchhhcCCCCCCE
Q psy14766 34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNN-INVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVTNMDE 108 (207)
Q Consensus 34 ~~~~~~c~~~~l~~~p~~~~---~~l~~L~ls~n~-i~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~f~~l~~L~~ 108 (207)
..+.++.+++.++.+|.... ++++.|++++|. ++.+++..|. ++++|++|++++ |.++.+++..|.++++|+.
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~--~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY--NLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEE--SCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcC--CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 46788999999999988433 589999999997 9999998887 789999999998 9999998889999999999
Q ss_pred EEcCCCCCCCcCCcccccccc---eeeccCC-ccccccccccCCCCCcc-EEecCCCceeeeccccCCCCCCccEEEeCC
Q psy14766 109 LDLSDNLLSTVPSLIYIPYLK---SINLAHN-PIHQISSYSFQSTPGIR-YIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183 (207)
Q Consensus 109 L~l~~n~l~~~~~~~~~~~L~---~L~l~~n-~i~~~~~~~~~~l~~L~-~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~ 183 (207)
|++++|.++.+|....+++|+ .|++++| .+..+++..+..+++|+ ++++++|+++.+++..+.. .+|+.|++++
T Consensus 110 L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred EeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 999999888877622266666 8888888 78877777777788888 8888888887777766655 6777777777
Q ss_pred CC-CCCCCCchhhhh-cccccCcC
Q psy14766 184 QW-KPRQNEDSDAQL-AKGRAHDF 205 (207)
Q Consensus 184 n~-l~~~~~~~~~~l-~~~~~~~~ 205 (207)
|+ ++...++.+..+ ++++.+.+
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDV 212 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEEC
T ss_pred CCCcccCCHHHhhccccCCcEEEC
Confidence 74 776666666666 55555443
No 41
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=1.8e-20 Score=139.95 Aligned_cols=145 Identities=14% Similarity=0.233 Sum_probs=131.1
Q ss_pred eEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc--ccccceeecc
Q psy14766 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLA 134 (207)
Q Consensus 57 ~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~ 134 (207)
+.++.+++.++.+|.... ++++.|++++|.++.+++..|..+++|+.|++++|.++.++...+ +++|+.|+++
T Consensus 14 ~~v~c~~~~l~~iP~~l~-----~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-----ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-----TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcCcCCCccC-----cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 468899999999987653 579999999999999999899999999999999999998866555 8999999999
Q ss_pred CCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCchhhhhcccccCcCC
Q psy14766 135 HNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAKGRAHDFR 206 (207)
Q Consensus 135 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~~~~~~~~ 206 (207)
+|.++.+++..|..+++|++|+|++|.++.+++..+..+++|+.|++++|.++...++.+..+++++.+.+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence 999999999889999999999999999999998899999999999999999999988888888877766553
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=8.7e-20 Score=143.88 Aligned_cols=166 Identities=16% Similarity=0.260 Sum_probs=120.1
Q ss_pred CeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCccee--eCchhhcCCCCCCEEEcC
Q psy14766 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF--VDDRAFRGVTNMDELDLS 112 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~f~~l~~L~~L~l~ 112 (207)
.+.++.+++.++++|..+.++++.|++++|.++.+++..+. ++++|+.|++++|.++. +.+..|.++++|+.|+++
T Consensus 102 L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 102 LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN--GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp CCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHT--TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred CCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhc--CCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 56677777778888877777888888888888888888777 78889999999888864 556788888888888888
Q ss_pred CCCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCc
Q psy14766 113 DNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNED 192 (207)
Q Consensus 113 ~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~ 192 (207)
+|.++.+|.... ++|+.|++++|.+..+.+..+..+++|+.|++++|.++++++..+..+++|+.|++++|.++.. |.
T Consensus 180 ~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~ 257 (330)
T 1xku_A 180 DTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PG 257 (330)
T ss_dssp SSCCCSCCSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CT
T ss_pred CCccccCCcccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-Ch
Confidence 888877766443 6677777777777776666677777777777777777776665666666677777777766633 33
Q ss_pred hhhhhcccccCc
Q psy14766 193 SDAQLAKGRAHD 204 (207)
Q Consensus 193 ~~~~l~~~~~~~ 204 (207)
.+..+++++.+.
T Consensus 258 ~l~~l~~L~~L~ 269 (330)
T 1xku_A 258 GLADHKYIQVVY 269 (330)
T ss_dssp TTTTCSSCCEEE
T ss_pred hhccCCCcCEEE
Confidence 444444444443
No 43
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=3.6e-20 Score=138.34 Aligned_cols=145 Identities=12% Similarity=0.236 Sum_probs=130.3
Q ss_pred eEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCc-hhhcCCCCCCEEEcCCCCCCCcCCccc--ccccceeec
Q psy14766 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD-RAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL 133 (207)
Q Consensus 57 ~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l 133 (207)
+.+++++|.++.+|.... ..+++|++++|.++.+.+ +.|..+++|+.|++++|.++.++...+ +++|+.|++
T Consensus 14 ~~l~~s~n~l~~iP~~~~-----~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP-----QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCSSCCSCCC-----TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCcccCccCCC-----CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 478999999999887553 457899999999999954 569999999999999999998887666 899999999
Q ss_pred cCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCchhhhhcccccCcCC
Q psy14766 134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAKGRAHDFR 206 (207)
Q Consensus 134 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~~~~~~~~ 206 (207)
++|.++.+++..+..+++|++|++++|.++++++..+.++++|+.|++++|.+++..++.+..+++++.+.+.
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 9999999999889999999999999999999988889999999999999999999989999888887776553
No 44
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=4.8e-20 Score=141.94 Aligned_cols=169 Identities=17% Similarity=0.241 Sum_probs=121.2
Q ss_pred CeeEEecCCCCcccCCC-CC--CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEc
Q psy14766 35 KRTVECIDRNFYTIPEG-ID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~-~~--~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l 111 (207)
.+.++.+++.++.++.. +. ++++.|++++|.++.+++..+. ++++|++|++++|.++.+.+..|.++++|+.|++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHcc--CCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 56788888888888763 32 5788888888888888887777 6788888888888888887778888888888888
Q ss_pred CCCCCCCcCCccc--ccccceeeccCCcccccc-ccccCCCCCccEEecCCCceeeeccccCCC----------------
Q psy14766 112 SDNLLSTVPSLIY--IPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYG---------------- 172 (207)
Q Consensus 112 ~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~---------------- 172 (207)
++|.+..++...+ +++|+.|++++|.+..+. +..+..+++|++|++++|+++++++..+..
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 8888777666444 677788888888777643 455667777777777777766654332211
Q ss_pred -----------CCCccEEEeCCCCCCCCCCchhhhhcccccCcC
Q psy14766 173 -----------SDQIRRPTITGQWKPRQNEDSDAQLAKGRAHDF 205 (207)
Q Consensus 173 -----------l~~L~~l~l~~n~l~~~~~~~~~~l~~~~~~~~ 205 (207)
..+|+.|++++|.++...+..+..+++++.+.+
T Consensus 188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231 (276)
T ss_dssp CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred cccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence 125667777777777666666666666555544
No 45
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=4.3e-20 Score=143.42 Aligned_cols=150 Identities=15% Similarity=0.180 Sum_probs=80.4
Q ss_pred CeeEEecCCCCcccCCC-C--CCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEc
Q psy14766 35 KRTVECIDRNFYTIPEG-I--DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~-~--~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l 111 (207)
.+.++.+++.+..++.. + .++++.|++++|.++.++.. . .+++|+.|++++|.++.++ ..+.++++|+.|++
T Consensus 33 l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~--~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--G--TLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDV 107 (290)
T ss_dssp CCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--S--CCTTCCEEECCSSCCSSCC-CCTTTCTTCCEEEC
T ss_pred CCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--C--CCCcCCEEECCCCcCCcCc-hhhccCCCCCEEEC
Confidence 45566666666655432 1 13566666666666555443 2 3455555555555555442 34455555555555
Q ss_pred CCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCC
Q psy14766 112 SDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQ 189 (207)
Q Consensus 112 ~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~ 189 (207)
++|+++.++...+ +++|+.|++++|+++.+++..+..+++|+.|++++|+++.+++..+.++++|+.|++++|.++..
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i 187 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc
Confidence 5555555554433 45555555555555555555455555555555555555555555555555555555555555533
No 46
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.83 E-value=5.2e-20 Score=132.14 Aligned_cols=115 Identities=32% Similarity=0.570 Sum_probs=100.5
Q ss_pred CCCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhc
Q psy14766 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101 (207)
Q Consensus 22 ~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~ 101 (207)
+||..|.|. .+.++|+++.++.+|..+++.++.|++++|.++++++..+. ++++|++|++++|+++.+++..|.
T Consensus 2 ~CP~~C~C~----~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~f~ 75 (170)
T 3g39_A 2 ACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFD--RLTQLTRLDLDNNQLTVLPAGVFD 75 (170)
T ss_dssp CCC-CCEEE----TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTT
T ss_pred cCcCcCCcC----CCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhc--CcccCCEEECCCCCcCccChhhcc
Confidence 799999998 47899999999999999889999999999999999888887 789999999999999999888888
Q ss_pred CCCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCcccccc
Q psy14766 102 GVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQIS 142 (207)
Q Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~ 142 (207)
++++|+.|++++|+++.++...+ +++|+.|++++|++....
T Consensus 76 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99999999999999888887655 788888888888776544
No 47
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.83 E-value=6.3e-20 Score=132.19 Aligned_cols=118 Identities=33% Similarity=0.577 Sum_probs=104.2
Q ss_pred ccCCCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchh
Q psy14766 20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA 99 (207)
Q Consensus 20 ~~~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 99 (207)
+.+||..|.|. .+.++|++.++..+|..++++++.|++++|.++++++..+. ++++|+.|++++|+++.+++..
T Consensus 3 ~~~CP~~C~C~----~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~i~~~~ 76 (174)
T 2r9u_A 3 SAGCPSQCSCD----QTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFD--HLVNLQQLYFNSNKLTAIPTGV 76 (174)
T ss_dssp CCSSCTTSEEC----SSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCCCCCEEC----CcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhc--CCcCCCEEECCCCCCCccChhH
Confidence 57899999997 58999999999999999989999999999999999888887 7899999999999999998888
Q ss_pred hcCCCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccc
Q psy14766 100 FRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISS 143 (207)
Q Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~ 143 (207)
|.++++|+.|++++|.++.++...+ +++|+.|++++|++.....
T Consensus 77 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 77 FDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred hCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 8899999999999999988887655 7888888888888776543
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=3.4e-20 Score=144.73 Aligned_cols=160 Identities=13% Similarity=0.263 Sum_probs=90.0
Q ss_pred eeEEecCCCCcccCCCCC--CCceEEEeecCCccccch-hhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcC
Q psy14766 36 RTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQK-EIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (207)
Q Consensus 36 ~~~~c~~~~l~~~p~~~~--~~l~~L~ls~n~i~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~ 112 (207)
+.++.+++.+..+|..+. ++++.|++++|.++.++. ..+. .+++|++|++++|.+....+..|.++++|+.|+++
T Consensus 81 ~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 81 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTT--TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred CEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhh--hccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence 344444544444443221 355666666666555544 3344 45566666666666666555556666666666666
Q ss_pred CCCCCC--cCCccc-ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCC
Q psy14766 113 DNLLST--VPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQ 189 (207)
Q Consensus 113 ~n~l~~--~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~ 189 (207)
+|.++. +|.... +++|+.|++++|.++.+++..+..+++|++|++++|.++++++..+..+++|+.|++++|.+++.
T Consensus 159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 666553 333322 55666666666666665555555666666666666666666555555566666666666666655
Q ss_pred CCchhhhh
Q psy14766 190 NEDSDAQL 197 (207)
Q Consensus 190 ~~~~~~~l 197 (207)
.+..+..+
T Consensus 239 ~~~~~~~~ 246 (306)
T 2z66_A 239 KKQELQHF 246 (306)
T ss_dssp SSSSCCCC
T ss_pred CHHHHHhh
Confidence 55544444
No 49
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=3.8e-20 Score=152.72 Aligned_cols=168 Identities=18% Similarity=0.295 Sum_probs=141.4
Q ss_pred CeeEEecCCCCcccCCC-CC--CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEc
Q psy14766 35 KRTVECIDRNFYTIPEG-ID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~-~~--~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l 111 (207)
.+.++.+++.++.++.. +. ++++.|++++|.++.+.+..+. ++++|+.|++++|.++.+++..|.++++|+.|++
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN--NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh--CCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 56788999999988653 32 5899999999999998888887 7899999999999999998888999999999999
Q ss_pred CCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCC
Q psy14766 112 SDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQ 189 (207)
Q Consensus 112 ~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~ 189 (207)
++|.+..++...+ +++|+.|++++|.+..+.+..+..+++|+.|++++|.++++++..+.++++|+.|++++|.+...
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 9999887766555 88999999999999888888888899999999999999888877788888888888888888877
Q ss_pred CCchhhhhcccccCc
Q psy14766 190 NEDSDAQLAKGRAHD 204 (207)
Q Consensus 190 ~~~~~~~l~~~~~~~ 204 (207)
.+..+..+++++.+.
T Consensus 192 ~~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 192 RDYSFKRLYRLKVLE 206 (477)
T ss_dssp CTTCSCSCTTCCEEE
T ss_pred ChhhcccCcccceee
Confidence 766666666555443
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=1.5e-19 Score=142.75 Aligned_cols=156 Identities=18% Similarity=0.261 Sum_probs=98.2
Q ss_pred CeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCccee--eCchhhcCCCCCCEEEcC
Q psy14766 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF--VDDRAFRGVTNMDELDLS 112 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~f~~l~~L~~L~l~ 112 (207)
.+.++.+++.++.+|....+++++|++++|.++.+++..+. .+++|+.|++++|.++. +.+..|..+ +|+.|+++
T Consensus 104 L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 104 LQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFS--GLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGS--SCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhC--CCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 56677777778888877777888888888888888877776 67888888888888763 445566555 44444444
Q ss_pred CCCCCCcCC---------------------ccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeecccc
Q psy14766 113 DNLLSTVPS---------------------LIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169 (207)
Q Consensus 113 ~n~l~~~~~---------------------~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 169 (207)
+|.++.+|. ..+ +++|+.|++++|.+..+++..+..+++|+.|++++|.++.++..
T Consensus 181 ~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~- 259 (332)
T 2ft3_A 181 EAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG- 259 (332)
T ss_dssp SSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT-
T ss_pred CCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh-
Confidence 444443332 222 45555555555555555554555556666666666666655433
Q ss_pred CCCCCCccEEEeCCCCCCCCCCchh
Q psy14766 170 FYGSDQIRRPTITGQWKPRQNEDSD 194 (207)
Q Consensus 170 ~~~l~~L~~l~l~~n~l~~~~~~~~ 194 (207)
+..+++|+.|++++|+++...+..+
T Consensus 260 l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred hhcCccCCEEECCCCCCCccChhHc
Confidence 4555566666666666655544444
No 51
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=1.2e-19 Score=136.29 Aligned_cols=145 Identities=17% Similarity=0.202 Sum_probs=130.0
Q ss_pred ceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc--ccccceeec
Q psy14766 56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL 133 (207)
Q Consensus 56 l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l 133 (207)
.+.++.+++.++.+|.... ++++.|++++|.++.+.+..|.++++|+.|++++|+++.++...+ +++|+.|++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-----TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccCCCcCccCCCCC-----CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 4568899999999997653 689999999999999999999999999999999999999988776 899999999
Q ss_pred cCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCchhhhhcccccCcCC
Q psy14766 134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAKGRAHDFR 206 (207)
Q Consensus 134 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~~~~~~~~ 206 (207)
++|+++.+++..+..+++|++|++++|+++.++.. +..+++|+.|++++|.++...+..+..+++++.+.+.
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTT-GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCcccccCcc-cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 99999999988889999999999999999988754 6889999999999999998888888888877766543
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.4e-19 Score=142.83 Aligned_cols=79 Identities=13% Similarity=0.201 Sum_probs=52.9
Q ss_pred CCCeeEEecCCCCcccCCCCC--CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEE
Q psy14766 33 AGKRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (207)
Q Consensus 33 ~~~~~~~c~~~~l~~~p~~~~--~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~ 110 (207)
...+.++++++.++.+|..+. +++++|++++|.++.+|... . .+++|++|++++|.++.+ |..|.++++|+.|+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~-~--~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM-Q--QFAGLETLTLARNPLRAL-PASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCG-G--GGTTCSEEEEESCCCCCC-CGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHH-h--ccCCCCEEECCCCccccC-cHHHhcCcCCCEEE
Confidence 346678888888888887654 47777888887777665433 3 466777777777777655 44566666666666
Q ss_pred cCCCC
Q psy14766 111 LSDNL 115 (207)
Q Consensus 111 l~~n~ 115 (207)
+++|.
T Consensus 157 L~~n~ 161 (328)
T 4fcg_A 157 IRACP 161 (328)
T ss_dssp EEEET
T ss_pred CCCCC
Confidence 66543
No 53
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=2e-19 Score=132.93 Aligned_cols=145 Identities=14% Similarity=0.204 Sum_probs=129.5
Q ss_pred eEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc--ccccceeecc
Q psy14766 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLA 134 (207)
Q Consensus 57 ~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~ 134 (207)
+.++.+++.++.+|.... +++++|++++|+++.+++..|+.+++|+.|++++|.++.++...+ +++|+.|+++
T Consensus 10 ~~v~c~~~~l~~~p~~~~-----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIP-----AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCSSCCSCCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCccCCCCCCC-----CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 457788888888886543 589999999999999988889999999999999999999888765 8999999999
Q ss_pred CCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCchhhhhcccccCcCC
Q psy14766 135 HNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAKGRAHDFR 206 (207)
Q Consensus 135 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~~~~~~~~ 206 (207)
+|+++.+++..+..+++|++|++++|.++++++..+..+++|+.|++++|.+++..+..+..+++++.+.+.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEec
Confidence 999999988888999999999999999999998889999999999999999998888778888877776553
No 54
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=1.2e-19 Score=146.23 Aligned_cols=134 Identities=16% Similarity=0.342 Sum_probs=81.1
Q ss_pred CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc--cccccee
Q psy14766 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI 131 (207)
Q Consensus 54 ~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L 131 (207)
.+++.++++++.++.+++..+. .+++|++|++++|.++.+++..|..+++|+.|++++|.++.+++..+ +++|+.|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHH--HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEecCCchhhCChhHhc--ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 4566666666666666666555 45666666666666666655566666666666666666665554433 5566666
Q ss_pred eccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCC
Q psy14766 132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQ 189 (207)
Q Consensus 132 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~ 189 (207)
++++|.+..+++..+..+++|++|++++|.++.+++..+.++++|+.|++++|.++..
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 6666666665555555566666666666666666555555666666666666655543
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=1.2e-19 Score=142.26 Aligned_cols=167 Identities=16% Similarity=0.150 Sum_probs=121.2
Q ss_pred CeeEEecCCCCc---ccCCCCC--CCceEEEeec-CCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCE
Q psy14766 35 KRTVECIDRNFY---TIPEGID--LDTQVLDLSS-NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDE 108 (207)
Q Consensus 35 ~~~~~c~~~~l~---~~p~~~~--~~l~~L~ls~-n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~ 108 (207)
.+.++.++..+. .+|..+. +++++|++++ |.+.+..+..+. .+++|++|++++|.++...+..|.++++|++
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA--KLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG--GCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh--cCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 445666667776 4666553 5899999995 888866566666 7889999999999998777778888999999
Q ss_pred EEcCCCCCC-CcCCccc-ccccceeeccCCccccccccccCCCC-CccEEecCCCceeeeccccCCCCCCccEEEeCCCC
Q psy14766 109 LDLSDNLLS-TVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTP-GIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQW 185 (207)
Q Consensus 109 L~l~~n~l~-~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~ 185 (207)
|++++|.++ .+|.... +++|++|++++|.+++..+..+..++ +|++|++++|.+++..+..+..+. |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999998888 4555444 78888888888888865565677776 788888888887765555565555 6667776666
Q ss_pred CCCCCCchhhhhcccccCc
Q psy14766 186 KPRQNEDSDAQLAKGRAHD 204 (207)
Q Consensus 186 l~~~~~~~~~~l~~~~~~~ 204 (207)
+.+..+..+..+++++.+.
T Consensus 209 l~~~~~~~~~~l~~L~~L~ 227 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIH 227 (313)
T ss_dssp EEECCGGGCCTTSCCSEEE
T ss_pred ccCcCCHHHhcCCCCCEEE
Confidence 6665555555555554443
No 56
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=150.75 Aligned_cols=157 Identities=15% Similarity=0.300 Sum_probs=139.7
Q ss_pred CeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCC
Q psy14766 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n 114 (207)
.+.++|+++.++.+|..++++++.|++++|.++++++..+. ++++|++|++++|+++.+.++.|+++++|++|++++|
T Consensus 2 ~~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 2 EFLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDIL--SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CCEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHT--TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred cceEecCCCCcccccccccccccEEECCCCcccccChhhcc--ccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 46899999999999999999999999999999999998888 8999999999999999998999999999999999999
Q ss_pred CCCCcCCcccccccceeeccCCcccccc-ccccCCCCCccEEecCCCceeeeccccCCCCCCc--cEEEeCCCCC--CCC
Q psy14766 115 LLSTVPSLIYIPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQI--RRPTITGQWK--PRQ 189 (207)
Q Consensus 115 ~l~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~l~l~~n~l--~~~ 189 (207)
.++.+|.. .+++|++|++++|.+.+++ +..++.+++|++|++++|.+++. .+..+++| +.+++++|.+ .+.
T Consensus 80 ~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 80 KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred ceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeeccccccccc
Confidence 99988887 7899999999999999853 46799999999999999999873 35566677 9999999999 666
Q ss_pred CCchhhhh
Q psy14766 190 NEDSDAQL 197 (207)
Q Consensus 190 ~~~~~~~l 197 (207)
.+..+..+
T Consensus 156 ~~~~l~~l 163 (520)
T 2z7x_B 156 DPEGLQDF 163 (520)
T ss_dssp CTTTTTTC
T ss_pred cccccccc
Confidence 66666553
No 57
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=3.7e-19 Score=143.30 Aligned_cols=149 Identities=19% Similarity=0.332 Sum_probs=133.2
Q ss_pred CeeEEecCCCCcccCCCC---CCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEc
Q psy14766 35 KRTVECIDRNFYTIPEGI---DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~---~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l 111 (207)
.+.++.++..++.+|... .++++.|++++|.++.+++..+. .+++|++|++++|.++.+++..|+++++|+.|++
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhcc--CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 455777788888888754 36899999999999999998888 8999999999999999999989999999999999
Q ss_pred CCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCC
Q psy14766 112 SDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPR 188 (207)
Q Consensus 112 ~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~ 188 (207)
++|.++.+|...+ +++|+.|++++|.+..+++..+..+++|++|++++|.++.++ +..+++|+.+++++|.+..
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccc
Confidence 9999999998775 899999999999999999888999999999999999999886 3456788899999888775
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=2.2e-19 Score=141.73 Aligned_cols=166 Identities=14% Similarity=0.203 Sum_probs=96.0
Q ss_pred CCeeEEecCCCCcccCCCCC--CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCc--------------
Q psy14766 34 GKRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD-------------- 97 (207)
Q Consensus 34 ~~~~~~c~~~~l~~~p~~~~--~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------------- 97 (207)
..+.++.+++.+..+|..+. +++++|++++|.++.+|... . .+++|++|++++|.+....|
T Consensus 105 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l-~--~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 105 HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASI-A--SLNRLRELSIRACPELTELPEPLASTDASGEHQG 181 (328)
T ss_dssp TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGG-G--GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred CCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHH-h--cCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence 35678888888888887654 57888888888888776543 3 45566666665543332222
Q ss_pred ------------------hhhcCCCCCCEEEcCCCCCCCcCCccc-ccccceeeccCCccccccccccCCCCCccEEecC
Q psy14766 98 ------------------RAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMS 158 (207)
Q Consensus 98 ------------------~~f~~l~~L~~L~l~~n~l~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 158 (207)
..|..+++|+.|++++|.++.+|.... +++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence 334455555555555555554444333 4555555555555554444445555556666665
Q ss_pred CCceeeeccccCCCCCCccEEEeCCCCCCCCCCchhhhhccccc
Q psy14766 159 NCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAKGRA 202 (207)
Q Consensus 159 ~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~~~~ 202 (207)
+|.+.+..+..+.++++|+.|++++|.+.+..|+.+..+++.+.
T Consensus 262 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp TCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred CCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence 55544444444555566666666666665555555555554443
No 59
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=5.7e-19 Score=149.69 Aligned_cols=153 Identities=16% Similarity=0.324 Sum_probs=130.1
Q ss_pred eEEecCCCCcccCCCCC-CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCC
Q psy14766 37 TVECIDRNFYTIPEGID-LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115 (207)
Q Consensus 37 ~~~c~~~~l~~~p~~~~-~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~ 115 (207)
.+.|........+..+. .+++.+++++|.++.+|+..+. .+++|+.|++++|.++.+++..|+.+++|+.|++++|.
T Consensus 33 ~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 110 (597)
T 3oja_B 33 HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 110 (597)
T ss_dssp EECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHH--HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHc--cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc
Confidence 34444333333333332 5789999999999999999887 78999999999999999988899999999999999999
Q ss_pred CCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCC
Q psy14766 116 LSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNE 191 (207)
Q Consensus 116 l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 191 (207)
++.+++..+ +++|+.|++++|.+..+++..|..+++|++|++++|.++++++..+.++++|+.|++++|.+++...
T Consensus 111 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 188 (597)
T 3oja_B 111 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 188 (597)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG
T ss_pred CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh
Confidence 998887765 8999999999999999988888899999999999999999998889999999999999999987643
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=1.1e-19 Score=142.61 Aligned_cols=162 Identities=17% Similarity=0.206 Sum_probs=135.0
Q ss_pred CeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhh-cCCCCCCEEEcCC
Q psy14766 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF-RGVTNMDELDLSD 113 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f-~~l~~L~~L~l~~ 113 (207)
.+.++.+++.+..++....++++.|++++|.++.+++..+. .+++|++|++++|.++.+.+..+ ..+++|+.|++++
T Consensus 101 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp CCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTG--GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred cCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhh--ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 45666677777777766667899999999999998887777 78999999999999999877766 4789999999999
Q ss_pred CCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCC-CCCCc
Q psy14766 114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKP-RQNED 192 (207)
Q Consensus 114 n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~-~~~~~ 192 (207)
|.++.++...++++|+.|++++|.++.+++. +..+++|++|++++|.++.++.. +..+++|+.+++++|++. +..+.
T Consensus 179 N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 179 NFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp SCCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCCBHHHHHH
T ss_pred CcCcccccccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhH-hhcCCCCCEEEccCCCccCcCHHH
Confidence 9999887766689999999999999998775 88899999999999999998754 788999999999999998 44555
Q ss_pred hhhhhccc
Q psy14766 193 SDAQLAKG 200 (207)
Q Consensus 193 ~~~~l~~~ 200 (207)
.+..++++
T Consensus 257 ~~~~~~~L 264 (317)
T 3o53_A 257 FFSKNQRV 264 (317)
T ss_dssp HHHTCHHH
T ss_pred HHhccccc
Confidence 55554433
No 61
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.6e-19 Score=144.23 Aligned_cols=154 Identities=16% Similarity=0.211 Sum_probs=137.3
Q ss_pred CeeEEecCCCCcccCCCC----CCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEE
Q psy14766 35 KRTVECIDRNFYTIPEGI----DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~----~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~ 110 (207)
.+.++.+++.++.++... .++++.|++++|.++.+++..|. ++++|+.|++++|+++.+++..|.++++|+.|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV--PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc--CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 567999999999998754 25899999999999999999888 899999999999999999998999999999999
Q ss_pred cCCCCCCCcCCccc--ccccceeeccCCcccccccccc---CCCCCccEEecCCCceeeeccccCCCCCC--ccEEEeCC
Q psy14766 111 LSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSF---QSTPGIRYIDMSNCQIHTIYSEAFYGSDQ--IRRPTITG 183 (207)
Q Consensus 111 l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~---~~l~~L~~L~L~~n~i~~~~~~~~~~l~~--L~~l~l~~ 183 (207)
+++|.++.++...+ +++|+.|++++|.++.++...+ ..+++|++|+|++|+++.++...+..++. ++.|++.+
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 99999998877666 8999999999999999988776 56899999999999999999877777776 48899999
Q ss_pred CCCCCCC
Q psy14766 184 QWKPRQN 190 (207)
Q Consensus 184 n~l~~~~ 190 (207)
|++.+.+
T Consensus 199 N~~~C~C 205 (361)
T 2xot_A 199 NPLECDC 205 (361)
T ss_dssp SCEECCH
T ss_pred CCccCCc
Confidence 9998654
No 62
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.80 E-value=5.6e-19 Score=129.12 Aligned_cols=131 Identities=15% Similarity=0.248 Sum_probs=118.4
Q ss_pred eEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCch-hhcCCCCCCEEEcCCCCCCCcCCccc--ccccceeec
Q psy14766 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR-AFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL 133 (207)
Q Consensus 57 ~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l 133 (207)
+.+++++|.++.+|.... .+++.|++++|.++.+++. .|..+++|+.|++++|.++.+++..+ +++|+.|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~-----~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-----LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-----TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCcCccCCC-----CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 578999999999987654 3899999999999999764 59999999999999999998866555 899999999
Q ss_pred cCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCc
Q psy14766 134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNED 192 (207)
Q Consensus 134 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~ 192 (207)
++|+++++++..+..+++|++|++++|+++++++..+..+++|+.|++++|++.+..+-
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 99999999998899999999999999999999888899999999999999999976553
No 63
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=4e-19 Score=150.63 Aligned_cols=130 Identities=22% Similarity=0.397 Sum_probs=109.2
Q ss_pred CeeEEecCCCCcccCCCC---CCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEc
Q psy14766 35 KRTVECIDRNFYTIPEGI---DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~---~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l 111 (207)
.+.+++.+..+..+|... .++++.|++++|.++.+++..+. .+++|+.|++++|.++.+++..|+++++|+.|++
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhc--CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 466778888888888754 36889999999999988888777 7888999999999999888888889999999999
Q ss_pred CCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeec
Q psy14766 112 SDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166 (207)
Q Consensus 112 ~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 166 (207)
++|.++.+|...+ +++|+.|++++|.+.++++..+..+++|++|++++|.+++++
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence 9999888888765 888999999999888888877888888888888888777654
No 64
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=9.1e-19 Score=143.50 Aligned_cols=135 Identities=23% Similarity=0.379 Sum_probs=83.7
Q ss_pred CceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc--ccccceee
Q psy14766 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSIN 132 (207)
Q Consensus 55 ~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~ 132 (207)
+++.|++++|.+.++.+..+. .+++|++|++++|.++.+.+..|.++++|+.|++++|.++.++...+ +++|+.|+
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFS--HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred CceEEEecCccccccchhhcc--cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 344555555555554455554 45666666666666666666666666666666666666665544433 56666666
Q ss_pred ccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCC
Q psy14766 133 LAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNE 191 (207)
Q Consensus 133 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 191 (207)
+++|+++.+.+..+..+++|++|++++|+++++++..+..+++|+.|++++|++++.++
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 66666666655556666666666666666666666656666666666666666666554
No 65
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=4.7e-19 Score=138.92 Aligned_cols=168 Identities=13% Similarity=0.104 Sum_probs=102.2
Q ss_pred CeeEEecC-CCCc-ccCCCCC--CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEE
Q psy14766 35 KRTVECID-RNFY-TIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (207)
Q Consensus 35 ~~~~~c~~-~~l~-~~p~~~~--~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~ 110 (207)
.+.++.++ +.+. .+|..+. +++++|++++|.+++..+..+. .+++|++|++++|.++...+..|..+++|+.|+
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS--QIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG--GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh--CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 44566663 4454 4555443 5788888888888755555555 577777777777777765566777777777777
Q ss_pred cCCCCCC-CcCCccc-cc-ccceeeccCCccc-----------------------cccccccCCCCCccEEecCCCceee
Q psy14766 111 LSDNLLS-TVPSLIY-IP-YLKSINLAHNPIH-----------------------QISSYSFQSTPGIRYIDMSNCQIHT 164 (207)
Q Consensus 111 l~~n~l~-~~~~~~~-~~-~L~~L~l~~n~i~-----------------------~~~~~~~~~l~~L~~L~L~~n~i~~ 164 (207)
+++|.++ .+|.... +. .|+.|++++|.+. +..+..+..+++|++|++++|.+++
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence 7777766 4554433 33 5555555555554 3334444555555555555555554
Q ss_pred eccccCCCCCCccEEEeCCCCCCCCCCchhhhhcccccCcC
Q psy14766 165 IYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAKGRAHDF 205 (207)
Q Consensus 165 ~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~~~~~~~ 205 (207)
.++. +..+++|+.|++++|.+++..|..+..+++++.+.+
T Consensus 236 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 275 (313)
T 1ogq_A 236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275 (313)
T ss_dssp BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred ecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEEC
Confidence 4433 455566666666666666556666666655555443
No 66
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.80 E-value=6.1e-19 Score=129.08 Aligned_cols=129 Identities=20% Similarity=0.314 Sum_probs=117.9
Q ss_pred eEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc--ccccceeecc
Q psy14766 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLA 134 (207)
Q Consensus 57 ~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~ 134 (207)
+.++++++.++.+|.... ++++.|++++|.++.++ ..|.++++|+.|++++|.++.++...+ +++|+.|+++
T Consensus 13 ~~l~~~~~~l~~ip~~~~-----~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP-----RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCSSCCSCCC-----TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCCcCCCCCC-----CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 468999999999987653 57999999999999885 799999999999999999999988766 8999999999
Q ss_pred CCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCC
Q psy14766 135 HNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNE 191 (207)
Q Consensus 135 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 191 (207)
+|.++.+++..|..+++|++|+|++|.++.+++..+..+++|+.+++++|++.+...
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 999999999899999999999999999999999889999999999999999986543
No 67
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.79 E-value=8.8e-19 Score=126.33 Aligned_cols=131 Identities=15% Similarity=0.237 Sum_probs=119.2
Q ss_pred ceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc--ccccceeec
Q psy14766 56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL 133 (207)
Q Consensus 56 l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l 133 (207)
.+.++++++.++.+|.... ++++.|++++|+++.+++..|..+++|+.|++++|.++.++...+ +++|+.|++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~-----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP-----SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCccCCCCCC-----CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 3568899999999886543 689999999999999988889999999999999999999888765 899999999
Q ss_pred cCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCC
Q psy14766 134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNE 191 (207)
Q Consensus 134 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 191 (207)
++|.++.+++..+..+++|++|++++|.++++++..+..+++|+.+++++|++.+..+
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999999998888999999999999999999998888899999999999999998765
No 68
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=9.3e-19 Score=148.38 Aligned_cols=161 Identities=17% Similarity=0.226 Sum_probs=138.6
Q ss_pred CCeeEEecCCCCcccCCCC-C--CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEE
Q psy14766 34 GKRTVECIDRNFYTIPEGI-D--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (207)
Q Consensus 34 ~~~~~~c~~~~l~~~p~~~-~--~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~ 110 (207)
..+.++.+++.++.+|+.. . +++++|++++|.++.+++++|. ++++|++|++++|+++.++++.|.++++|++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~--~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhc--CCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 3578999999999998743 3 5899999999999999999998 899999999999999999999999999999999
Q ss_pred cCCCCCCCcCCccc--ccccceeeccCCcccccc-ccccCCCCCccEEecCCCceeeeccccCCCCCC----ccEEEeCC
Q psy14766 111 LSDNLLSTVPSLIY--IPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQ----IRRPTITG 183 (207)
Q Consensus 111 l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~----L~~l~l~~ 183 (207)
+++|+++.++...+ +++|+.|++++|.+..+. +..+..+++|++|++++|+++++++..+..+.+ ...++++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 99999999988766 899999999999998764 456788999999999999999998776654443 34688888
Q ss_pred CCCCCCCCchhhh
Q psy14766 184 QWKPRQNEDSDAQ 196 (207)
Q Consensus 184 n~l~~~~~~~~~~ 196 (207)
|.+....+..+..
T Consensus 211 n~l~~i~~~~~~~ 223 (635)
T 4g8a_A 211 NPMNFIQPGAFKE 223 (635)
T ss_dssp CCCCEECTTTTTT
T ss_pred CcccccCcccccc
Confidence 9888766554443
No 69
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.78 E-value=1.5e-18 Score=148.81 Aligned_cols=167 Identities=16% Similarity=0.214 Sum_probs=147.3
Q ss_pred CCeeEEecCCCCcccCCCCC---CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEE
Q psy14766 34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (207)
Q Consensus 34 ~~~~~~c~~~~l~~~p~~~~---~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~ 110 (207)
..+.++.+++.++.+|.... +++++|++++|.++++++..+. ++++|++|++++|.++.+++..|+++++|++|+
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ--KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHH--HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHh--cccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 46789999999999887432 5899999999999999999888 789999999999999999888999999999999
Q ss_pred cCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCC--CCCCccEEEeCCCCC
Q psy14766 111 LSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY--GSDQIRRPTITGQWK 186 (207)
Q Consensus 111 l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~l~l~~n~l 186 (207)
+++|.++.+++..+ +++|++|++++|.+.+.++..+..+++|++|++++|.++++++..+. .+++|+.|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 99999998887655 89999999999999999888899999999999999999998876543 458899999999999
Q ss_pred CCCCCchhhhhccccc
Q psy14766 187 PRQNEDSDAQLAKGRA 202 (207)
Q Consensus 187 ~~~~~~~~~~l~~~~~ 202 (207)
++..+..+..+.+++.
T Consensus 184 ~~~~~~~~~~l~~L~~ 199 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFG 199 (680)
T ss_dssp CCBCTTGGGGSSEECE
T ss_pred cccChhhhhhhhhhhh
Confidence 9988887776655443
No 70
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.78 E-value=2e-18 Score=146.25 Aligned_cols=161 Identities=14% Similarity=0.172 Sum_probs=98.9
Q ss_pred CeeEEecCCCCcccCCCCC--CCceEEEeecCCccccch-hhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEc
Q psy14766 35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQK-EIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~--~~l~~L~ls~n~i~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l 111 (207)
.+.++.+++.+..+|..+. ++++.|++++|.+.+.++ ..+. .+++|+.|++++|.+....+..|.++++|+.|++
T Consensus 378 L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 455 (606)
T 3vq2_A 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL--SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455 (606)
T ss_dssp CCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTT--TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred ccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhh--ccccCCEEECcCCCCCccchhhhcCCCCCCEEEC
Confidence 4455666666666664443 466777777777666554 4444 5666777777777766666666666666666666
Q ss_pred CCCCCCC--cCCccc-ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCC
Q psy14766 112 SDNLLST--VPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPR 188 (207)
Q Consensus 112 ~~n~l~~--~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~ 188 (207)
++|.++. +|.... +++|+.|++++|+++++++..+..+++|++|++++|+++++.+..+.++++|+.|++++|+++.
T Consensus 456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 535 (606)
T 3vq2_A 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535 (606)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC
T ss_pred CCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc
Confidence 6666653 333322 5666666666666666666566666666666666666666655556666666666666666664
Q ss_pred CCCchhhhhc
Q psy14766 189 QNEDSDAQLA 198 (207)
Q Consensus 189 ~~~~~~~~l~ 198 (207)
.++. +..++
T Consensus 536 ~p~~-~~~l~ 544 (606)
T 3vq2_A 536 SKGI-LQHFP 544 (606)
T ss_dssp EESC-GGGSC
T ss_pred cCHh-Hhhhc
Confidence 3333 44443
No 71
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.78 E-value=1.9e-18 Score=150.39 Aligned_cols=169 Identities=14% Similarity=0.128 Sum_probs=121.7
Q ss_pred CeeEEecCCCCc-ccCCCCC--CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEc
Q psy14766 35 KRTVECIDRNFY-TIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (207)
Q Consensus 35 ~~~~~c~~~~l~-~~p~~~~--~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l 111 (207)
.+.++.+++.+. .+|..+. ++++.|++++|.+++..+..+. .+++|+.|++++|+++...|..+..+++|+.|++
T Consensus 468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG--RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh--cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEEC
Confidence 445666666655 3444332 4677777777777765555555 6778888888888887777778888888888888
Q ss_pred CCCCCC-CcCCccc------------------------------------------------------------------
Q psy14766 112 SDNLLS-TVPSLIY------------------------------------------------------------------ 124 (207)
Q Consensus 112 ~~n~l~-~~~~~~~------------------------------------------------------------------ 124 (207)
++|.++ .+|...+
T Consensus 546 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred CCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence 887765 4443211
Q ss_pred -----ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCchhhhhcc
Q psy14766 125 -----IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAK 199 (207)
Q Consensus 125 -----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~ 199 (207)
+++|+.|++++|++++..|..++.+++|+.|+|++|++++..+..++++++|+.|++++|++++..|..+..++.
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~ 705 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC
Confidence 345777888888888777777888888888888888888666667888888888888888888888888887776
Q ss_pred cccCcC
Q psy14766 200 GRAHDF 205 (207)
Q Consensus 200 ~~~~~~ 205 (207)
++.+.+
T Consensus 706 L~~L~l 711 (768)
T 3rgz_A 706 LTEIDL 711 (768)
T ss_dssp CSEEEC
T ss_pred CCEEEC
Confidence 666554
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=5.5e-18 Score=132.58 Aligned_cols=144 Identities=21% Similarity=0.274 Sum_probs=72.6
Q ss_pred CeeEEecCCCCcccCCC-CCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCC
Q psy14766 35 KRTVECIDRNFYTIPEG-IDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~-~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~ 113 (207)
.+.+++++..++.+|.- ..++++.|++++|.++.+++ +. .+++|++|++++|.++.++ .+..+++|+.|++++
T Consensus 43 L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~--~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 43 ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LK--NLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTS 116 (308)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTT
T ss_pred cCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--Hc--cCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCC
Confidence 45566666666655531 12456666666666665555 33 4555666666666555542 455555555555555
Q ss_pred CCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCC
Q psy14766 114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPR 188 (207)
Q Consensus 114 n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~ 188 (207)
|.++.++....+++|+.|++++|.++.+++ +..+++|++|++++|.++++++ +..+++|+.|++++|.++.
T Consensus 117 n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 117 TQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp SCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCchhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 555544432114455555555555544433 4444444444444444444432 3444444444444444443
No 73
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.77 E-value=2.2e-18 Score=146.01 Aligned_cols=160 Identities=19% Similarity=0.206 Sum_probs=142.4
Q ss_pred CeeEEecCCCCcccCC-CCC--CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEc
Q psy14766 35 KRTVECIDRNFYTIPE-GID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~-~~~--~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l 111 (207)
.+.++.+++.++.+++ .+. +++++|++++|.+..+.+..|. ++++|++|++++|.++.+.+..|+++++|+.|++
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ--SQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhcc--CccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 5789999999999965 333 5899999999999999999888 8999999999999999999999999999999999
Q ss_pred CCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCcc--EEEeCCCCCC
Q psy14766 112 SDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIR--RPTITGQWKP 187 (207)
Q Consensus 112 ~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~--~l~l~~n~l~ 187 (207)
++|.++.++...+ +++|++|++++|.+..+....+..+++|++|++++|.++.+++..+..+++|+ .+++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 9999998855545 89999999999999997655566799999999999999999888888999999 8999999999
Q ss_pred CCCCchhhh
Q psy14766 188 RQNEDSDAQ 196 (207)
Q Consensus 188 ~~~~~~~~~ 196 (207)
+..+..+..
T Consensus 193 ~~~~~~~~~ 201 (606)
T 3t6q_A 193 GIEPGAFDS 201 (606)
T ss_dssp EECTTTTTT
T ss_pred ccChhHhhh
Confidence 887766544
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=7.8e-19 Score=145.52 Aligned_cols=159 Identities=18% Similarity=0.211 Sum_probs=131.0
Q ss_pred CeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhc-CCCCCCEEEcCC
Q psy14766 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR-GVTNMDELDLSD 113 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~-~l~~L~~L~l~~ 113 (207)
...++++++.+..+|....++++.|++++|.++++++..+. .+++|+.|++++|.++.+.+..|. .+++|+.|++++
T Consensus 101 L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp CCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGG--GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred cCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhc--CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 45566677777777666667889999999999988887776 789999999999999988777776 789999999999
Q ss_pred CCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCC-CCCCc
Q psy14766 114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKP-RQNED 192 (207)
Q Consensus 114 n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~-~~~~~ 192 (207)
|.++.++....+++|+.|++++|.++++++. +..+++|+.|++++|.++++|.. +..+++|+.+++++|++. +..+.
T Consensus 179 N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 179 NFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp SCCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBCHHHHHH
T ss_pred CccccccccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCcCcchHH
Confidence 9999887766688999999999999998776 78889999999999999998754 778899999999999888 33344
Q ss_pred hhhhh
Q psy14766 193 SDAQL 197 (207)
Q Consensus 193 ~~~~l 197 (207)
.+..+
T Consensus 257 ~~~~l 261 (487)
T 3oja_A 257 FFSKN 261 (487)
T ss_dssp HHTTC
T ss_pred HHHhC
Confidence 44433
No 75
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=5.5e-18 Score=131.56 Aligned_cols=158 Identities=16% Similarity=0.250 Sum_probs=116.1
Q ss_pred CeeEEecCCCCcccCC-CCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCC
Q psy14766 35 KRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~-~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~ 113 (207)
.+.++++++.++.+|. ...++++.|++++|.++.+++ +. .+++|++|++++|.++.++ .+..+++|+.|++++
T Consensus 48 L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~--~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LA--NLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEH 121 (291)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECTT
T ss_pred ccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cc--cCCCCCEEECCCCcCCCCh--hhccCCCCCEEECCC
Confidence 5678888888887765 113688888888888888776 44 6788888888888888763 478888888888888
Q ss_pred CCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCch
Q psy14766 114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDS 193 (207)
Q Consensus 114 n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~ 193 (207)
|+++.++....+++|+.|++++|.++.+ ..+..+++|++|++++|.++++++ +..+++|+.|++++|.++... .
T Consensus 122 n~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~--~ 195 (291)
T 1h6t_A 122 NGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--A 195 (291)
T ss_dssp SCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--G
T ss_pred CcCCCChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh--h
Confidence 8887765433377888888888888776 347777888888888888887765 677788888888888777642 3
Q ss_pred hhhhcccccCc
Q psy14766 194 DAQLAKGRAHD 204 (207)
Q Consensus 194 ~~~l~~~~~~~ 204 (207)
+..+++++.+.
T Consensus 196 l~~l~~L~~L~ 206 (291)
T 1h6t_A 196 LAGLKNLDVLE 206 (291)
T ss_dssp GTTCTTCSEEE
T ss_pred hccCCCCCEEE
Confidence 55555554443
No 76
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=144.94 Aligned_cols=161 Identities=17% Similarity=0.242 Sum_probs=142.2
Q ss_pred CeeEEecCCCCcccCCCC-C--CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEc
Q psy14766 35 KRTVECIDRNFYTIPEGI-D--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~-~--~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l 111 (207)
.+.++.+++.++.++... . +++++|++++|.++++++..+. ++++|++|++++|.++.+++..|+++++|++|++
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccccc--CchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 577999999999987643 2 5899999999999999999888 8999999999999999999899999999999999
Q ss_pred CCCCCCCcCCccc--ccccceeeccCCcccccc-ccccCCCCCccEEecCCCceeeeccccCCCCCCc----cEEEeCCC
Q psy14766 112 SDNLLSTVPSLIY--IPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQI----RRPTITGQ 184 (207)
Q Consensus 112 ~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L----~~l~l~~n 184 (207)
++|.++.++...+ +++|++|++++|.+..+. +..++.+++|++|++++|.++++++..+..+.+| ..+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9999998887545 899999999999998853 5678999999999999999999988778777777 89999999
Q ss_pred CCCCCCCchhhhh
Q psy14766 185 WKPRQNEDSDAQL 197 (207)
Q Consensus 185 ~l~~~~~~~~~~l 197 (207)
.+.+..+..+...
T Consensus 188 ~l~~~~~~~~~~~ 200 (570)
T 2z63_A 188 PMNFIQPGAFKEI 200 (570)
T ss_dssp CCCEECTTTTTTC
T ss_pred CceecCHHHhccC
Confidence 9998777666543
No 77
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=6.1e-18 Score=124.01 Aligned_cols=145 Identities=15% Similarity=0.195 Sum_probs=100.9
Q ss_pred CeeEEecCCCCcccCCCC--CCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcC
Q psy14766 35 KRTVECIDRNFYTIPEGI--DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~--~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~ 112 (207)
.+.++++++.+..+|. + .++++.|++++|.++.++ .+. .+++|++|++++|+++...+..|+.+++|+.|+++
T Consensus 46 L~~L~l~~n~i~~l~~-l~~l~~L~~L~l~~n~~~~~~--~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 46 LTYITLANINVTDLTG-IEYAHNIKDLTINNIHATNYN--PIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp CCEEEEESSCCSCCTT-GGGCTTCSEEEEESCCCSCCG--GGT--TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred ccEEeccCCCccChHH-HhcCCCCCEEEccCCCCCcch--hhh--cCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 5667777777777773 3 257888888888666554 344 57778888888888777556677778888888888
Q ss_pred CCCCCCc-CCccc-ccccceeeccCCc-cccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCC
Q psy14766 113 DNLLSTV-PSLIY-IPYLKSINLAHNP-IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPR 188 (207)
Q Consensus 113 ~n~l~~~-~~~~~-~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~ 188 (207)
+|.++.. +.... +++|+.|++++|. +..++ .+..+++|++|++++|.+++++ .+..+++|+.|++++|++.+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 8877742 22222 7778888888886 66664 3677788888888888887765 46677778888888887653
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=1.9e-18 Score=135.39 Aligned_cols=144 Identities=12% Similarity=0.080 Sum_probs=75.3
Q ss_pred CceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeC--chhh--cCCCCCCEEEcCCCCCCCcCC---ccc--c
Q psy14766 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD--DRAF--RGVTNMDELDLSDNLLSTVPS---LIY--I 125 (207)
Q Consensus 55 ~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~f--~~l~~L~~L~l~~n~l~~~~~---~~~--~ 125 (207)
++++|++++|.++.+++..+. .+++|++|++++|++.... +..+ ..+++|+.|++++|.++.++. ..+ +
T Consensus 150 ~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l 227 (312)
T 1wwl_A 150 GLKVLSIAQAHSLNFSCEQVR--VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227 (312)
T ss_dssp TCCEEEEESCSCCCCCTTTCC--CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT
T ss_pred CCcEEEeeCCCCccchHHHhc--cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC
Confidence 444455555555444444444 4455555555555433210 1111 445555555555555543222 111 3
Q ss_pred cccceeeccCCccccccc-cccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCchhhhhcccccCc
Q psy14766 126 PYLKSINLAHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAKGRAHD 204 (207)
Q Consensus 126 ~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~~~~~~ 204 (207)
++|+.|++++|.+.+.++ ..+..+++|++|++++|.++.++.... ++|+.|++++|++++. |. +..+++++.+.
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~ 302 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRN-PS-PDELPQVGNLS 302 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCSC-CC-TTTSCEEEEEE
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc---CCceEEECCCCCCCCC-hh-HhhCCCCCEEe
Confidence 566666666666666542 334456677777777777776654422 5677777777777765 33 55555555544
Q ss_pred C
Q psy14766 205 F 205 (207)
Q Consensus 205 ~ 205 (207)
+
T Consensus 303 L 303 (312)
T 1wwl_A 303 L 303 (312)
T ss_dssp C
T ss_pred c
Confidence 3
No 79
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.75 E-value=2.1e-18 Score=123.22 Aligned_cols=140 Identities=18% Similarity=0.232 Sum_probs=119.7
Q ss_pred ccCCCCCCCceEEEeecCCcc--ccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCC-cCCcc
Q psy14766 47 TIPEGIDLDTQVLDLSSNNIN--VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST-VPSLI 123 (207)
Q Consensus 47 ~~p~~~~~~l~~L~ls~n~i~--~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~-~~~~~ 123 (207)
.++...++.++.|++++|.++ .++.. +. .+++|+.|++++|.++.+ ..|..+++|+.|++++|.++. +|...
T Consensus 17 ~~~~~~~~~L~~L~l~~n~l~~~~i~~~-~~--~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 17 ELRNRTPAAVRELVLDNCKSNDGKIEGL-TA--EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp HHTTSCTTSCSEEECCSCBCBTTBCSSC-CG--GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred hhccCCcccCCEEECCCCCCChhhHHHH-HH--hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH
Confidence 345555678999999999998 66554 44 689999999999999988 689999999999999999997 45444
Q ss_pred c-ccccceeeccCCccccccc-cccCCCCCccEEecCCCceeeecc---ccCCCCCCccEEEeCCCCCCCCCC
Q psy14766 124 Y-IPYLKSINLAHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTIYS---EAFYGSDQIRRPTITGQWKPRQNE 191 (207)
Q Consensus 124 ~-~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~l~l~~n~l~~~~~ 191 (207)
. +++|+.|++++|.++.++. ..+..+++|++|++++|.++++++ ..+..+++|+.|++++|.+...+.
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 4 8999999999999999764 568899999999999999999987 578899999999999998876543
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=1.5e-17 Score=130.10 Aligned_cols=159 Identities=13% Similarity=0.174 Sum_probs=123.3
Q ss_pred CCeeEEecCCCCcccCC-CCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcC
Q psy14766 34 GKRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (207)
Q Consensus 34 ~~~~~~c~~~~l~~~p~-~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~ 112 (207)
..+.++++++.+..++. .-.++++.|++++|.++.++ .+. .+++|++|++++|.++.++ .+..+++|+.|+++
T Consensus 64 ~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~--~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~ 137 (308)
T 1h6u_A 64 NLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS--AIA--GLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLD 137 (308)
T ss_dssp TCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG--GGT--TCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECC
T ss_pred CCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch--hhc--CCCCCCEEECCCCCCCCch--hhcCCCCCCEEECC
Confidence 46778888888888876 12258999999999998875 344 6888999999999988874 38888899999999
Q ss_pred CCCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCc
Q psy14766 113 DNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNED 192 (207)
Q Consensus 113 ~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~ 192 (207)
+|.++.++....+++|+.|++++|.++.+++ +..+++|+.|++++|.++++++ +..+++|+.|++++|.+++..+
T Consensus 138 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~- 212 (308)
T 1h6u_A 138 LNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP- 212 (308)
T ss_dssp SSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-
T ss_pred CCccCcCccccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-
Confidence 9888877763337888888888888888765 7788888888888888888764 6678888888888888886542
Q ss_pred hhhhhcccccCc
Q psy14766 193 SDAQLAKGRAHD 204 (207)
Q Consensus 193 ~~~~l~~~~~~~ 204 (207)
+..+++++.+.
T Consensus 213 -l~~l~~L~~L~ 223 (308)
T 1h6u_A 213 -LANTSNLFIVT 223 (308)
T ss_dssp -GTTCTTCCEEE
T ss_pred -ccCCCCCCEEE
Confidence 55555555443
No 81
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.75 E-value=4.9e-18 Score=142.22 Aligned_cols=153 Identities=16% Similarity=0.248 Sum_probs=130.1
Q ss_pred CCeeEEecCCCCcccCC-CCC--CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEE
Q psy14766 34 GKRTVECIDRNFYTIPE-GID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (207)
Q Consensus 34 ~~~~~~c~~~~l~~~p~-~~~--~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~ 110 (207)
..+.++.+++.++.+++ .+. +++++|++++|.++.+++..+. ++++|++|++++|.++.+++..|+++++|++|+
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY--SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcc--ccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 46889999999998865 333 5899999999999999998888 899999999999999999888899999999999
Q ss_pred cCCCCCCCc--CCccc-ccccceeeccCCc-cccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCC
Q psy14766 111 LSDNLLSTV--PSLIY-IPYLKSINLAHNP-IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWK 186 (207)
Q Consensus 111 l~~n~l~~~--~~~~~-~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l 186 (207)
+++|.++.+ +.... +++|+.|++++|. +..+++..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 999999854 34333 8999999999998 6777777799999999999999999998777777777666666666665
Q ss_pred CC
Q psy14766 187 PR 188 (207)
Q Consensus 187 ~~ 188 (207)
..
T Consensus 185 ~~ 186 (549)
T 2z81_A 185 AF 186 (549)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 82
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=6.2e-18 Score=129.47 Aligned_cols=150 Identities=17% Similarity=0.243 Sum_probs=116.2
Q ss_pred CCeeEEecCCCCcccCC-CCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcC
Q psy14766 34 GKRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (207)
Q Consensus 34 ~~~~~~c~~~~l~~~p~-~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~ 112 (207)
..+.++++++.++.+|. ...++++.|++++|.++++++ +. .+++|+.|++++|+++.+++ +.. ++|+.|+++
T Consensus 42 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~--~l~~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~ 114 (263)
T 1xeu_A 42 GVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LK--DLTKLEELSVNRNRLKNLNG--IPS-ACLSRLFLD 114 (263)
T ss_dssp TCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCSSCCEEECCSSCCSCCTT--CCC-SSCCEEECC
T ss_pred cCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hc--cCCCCCEEECCCCccCCcCc--ccc-CcccEEEcc
Confidence 45678888888888873 123588888999888888877 55 68888899999888888754 333 788889998
Q ss_pred CCCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCc
Q psy14766 113 DNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNED 192 (207)
Q Consensus 113 ~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~ 192 (207)
+|+++.++....+++|+.|++++|++++++ .+..+++|+.|++++|.++++ ..+..+++|+.|++++|++......
T Consensus 115 ~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 115 NNELRDTDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp SSCCSBSGGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred CCccCCChhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCccc
Confidence 888887764333888889999999888875 477888899999999988888 4577888889999998888766443
Q ss_pred hh
Q psy14766 193 SD 194 (207)
Q Consensus 193 ~~ 194 (207)
..
T Consensus 191 ~~ 192 (263)
T 1xeu_A 191 YQ 192 (263)
T ss_dssp CC
T ss_pred cc
Confidence 33
No 83
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.74 E-value=2.2e-17 Score=137.47 Aligned_cols=132 Identities=15% Similarity=0.222 Sum_probs=64.8
Q ss_pred CceEEEeecCCccccch--hhhhhcCCCcceEEEecCCccee-eCchhhcCCCCCCEEEcCCCCCCC-cCCcccccccce
Q psy14766 55 DTQVLDLSSNNINVLQK--EIFLQMGITNIQKLYLRKCKLEF-VDDRAFRGVTNMDELDLSDNLLST-VPSLIYIPYLKS 130 (207)
Q Consensus 55 ~l~~L~ls~n~i~~~~~--~~~~~~~~~~L~~L~l~~n~l~~-~~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~L~~ 130 (207)
+++.|++++|.+++++. ..+. .+++|+.|++++|.++. ++...|..+++|+.|++++|.++. ++.. ..++|+.
T Consensus 349 ~L~~L~L~~N~l~~l~~~~~~~~--~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~~~L~~ 425 (520)
T 2z7x_B 349 ELETLILQMNQLKELSKIAEMTT--QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC-LPPRIKV 425 (520)
T ss_dssp SCCEEECCSSCCCBHHHHHHHHT--TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS-CCTTCCE
T ss_pred CCCEEEccCCccCccccchHHHh--hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhh-hcccCCE
Confidence 44444444444443322 2232 34444444444444444 333334444444444444444431 1111 1145555
Q ss_pred eeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCC
Q psy14766 131 INLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQN 190 (207)
Q Consensus 131 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~ 190 (207)
|++++|+++.++.. +..+++|++|++++|+++.++...+..+++|+.+++++|++.+.+
T Consensus 426 L~Ls~N~l~~ip~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 426 LDLHSNKIKSIPKQ-VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp EECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred EECCCCcccccchh-hhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence 66666655554443 235666666666666666665555556666666666666666543
No 84
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.74 E-value=4.2e-17 Score=137.23 Aligned_cols=133 Identities=17% Similarity=0.161 Sum_probs=67.8
Q ss_pred CceEEEeecCCccccch--hhhhhcCCCcceEEEecCCccee-eCchhhcCCCCCCEEEcCCCCCCC-cCCcccccccce
Q psy14766 55 DTQVLDLSSNNINVLQK--EIFLQMGITNIQKLYLRKCKLEF-VDDRAFRGVTNMDELDLSDNLLST-VPSLIYIPYLKS 130 (207)
Q Consensus 55 ~l~~L~ls~n~i~~~~~--~~~~~~~~~~L~~L~l~~n~l~~-~~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~L~~ 130 (207)
+++.|++++|.+++++. ..+. ++++|+.|++++|.++. +++..|..+++|+.|++++|.++. ++.. ..++|+.
T Consensus 378 ~L~~L~L~~N~l~~~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~~L~~ 454 (562)
T 3a79_B 378 RLQTLILQRNGLKNFFKVALMTK--NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC-LPPKVKV 454 (562)
T ss_dssp SCCEEECCSSCCCBTTHHHHTTT--TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS-CCTTCSE
T ss_pred CCCEEECCCCCcCCcccchhhhc--CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh-hcCcCCE
Confidence 45555555555544432 2222 34455555555555544 433344455555555555554431 1111 1145566
Q ss_pred eeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCC
Q psy14766 131 INLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNE 191 (207)
Q Consensus 131 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 191 (207)
|++++|+++.+++..+ .+++|++|++++|+++.+++..+..+++|+.+++++|++.+.++
T Consensus 455 L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 455 LDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp EECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred EECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 6666666665554433 55666666666666666655545556666666666666665433
No 85
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=1.9e-17 Score=126.80 Aligned_cols=155 Identities=15% Similarity=0.158 Sum_probs=129.2
Q ss_pred eEEecCCCCcccCC-CCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCC
Q psy14766 37 TVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115 (207)
Q Consensus 37 ~~~c~~~~l~~~p~-~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~ 115 (207)
.+.+.+..+++++. .-.++++.|++++|.++.++ .+. .+++|+.|++++|+++.+++ +..+++|+.|++++|+
T Consensus 23 ~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~--~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 23 KQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQ--FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGG--GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC
T ss_pred HHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHh--hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc
Confidence 34456666777662 11268999999999999887 344 68999999999999999865 9999999999999999
Q ss_pred CCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCchhh
Q psy14766 116 LSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSDA 195 (207)
Q Consensus 116 l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~ 195 (207)
++.++.... ++|+.|++++|+++.++ .+..+++|+.|++++|++++++ .+..+++|+.|++++|.+++. ..+.
T Consensus 97 l~~l~~~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~ 169 (263)
T 1xeu_A 97 LKNLNGIPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLT 169 (263)
T ss_dssp CSCCTTCCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--TTST
T ss_pred cCCcCcccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--HHhc
Confidence 998887655 89999999999999875 3889999999999999999985 478899999999999999976 5566
Q ss_pred hhcccccCc
Q psy14766 196 QLAKGRAHD 204 (207)
Q Consensus 196 ~l~~~~~~~ 204 (207)
.+++++.+.
T Consensus 170 ~l~~L~~L~ 178 (263)
T 1xeu_A 170 RLKKVNWID 178 (263)
T ss_dssp TCCCCCEEE
T ss_pred cCCCCCEEe
Confidence 666655543
No 86
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.73 E-value=2.3e-17 Score=143.58 Aligned_cols=140 Identities=15% Similarity=0.065 Sum_probs=70.9
Q ss_pred CceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCC-CcCCccc-ccccceee
Q psy14766 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS-TVPSLIY-IPYLKSIN 132 (207)
Q Consensus 55 ~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~-~~~L~~L~ 132 (207)
+++.|++++|.+++..+..+. .+++|+.|++++|.++...+..|..+++|+.|++++|.++ .+|.... +++|+.|+
T Consensus 419 ~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 496 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIPSSLG--SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496 (768)
T ss_dssp TCCEEECCSSEEESCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCEEECcCCcccCcccHHHh--cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEE
Confidence 445555555555444334343 3445555555555555444445555555555555555554 2333222 45555555
Q ss_pred ccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCchhhh
Q psy14766 133 LAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQ 196 (207)
Q Consensus 133 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~ 196 (207)
+++|++.+..+..++.+++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+..
T Consensus 497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 5555555444444555555555555555555444444555555555555555555554444433
No 87
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=3.9e-17 Score=138.39 Aligned_cols=159 Identities=16% Similarity=0.250 Sum_probs=106.2
Q ss_pred CCeeEEecCCCCcccCC-CCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcC
Q psy14766 34 GKRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (207)
Q Consensus 34 ~~~~~~c~~~~l~~~p~-~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~ 112 (207)
..+.++++++.+..+|. ...++++.|++++|.+..+++ +. .+++|+.|++++|.++.++ .+..+++|+.|+++
T Consensus 44 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~--~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LT--NLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLE 117 (605)
T ss_dssp TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GG--GCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECT
T ss_pred CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hc--cCCCCCEEECcCCCCCCCh--hhccCCCCCEEEec
Confidence 34556777777777664 123577888888888777766 44 5777777777777777653 57777777777777
Q ss_pred CCCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCc
Q psy14766 113 DNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNED 192 (207)
Q Consensus 113 ~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~ 192 (207)
+|.++.++....+++|+.|++++|.+..+ ..+..+++|+.|+|++|.++++++ +..+++|+.|+|++|.++.. .
T Consensus 118 ~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~ 191 (605)
T 1m9s_A 118 HNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--R 191 (605)
T ss_dssp TSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--G
T ss_pred CCCCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--h
Confidence 77777665432367777777777777766 236677777777777777777654 66677777777777777654 2
Q ss_pred hhhhhcccccCc
Q psy14766 193 SDAQLAKGRAHD 204 (207)
Q Consensus 193 ~~~~l~~~~~~~ 204 (207)
.+..+++++.+.
T Consensus 192 ~l~~l~~L~~L~ 203 (605)
T 1m9s_A 192 ALAGLKNLDVLE 203 (605)
T ss_dssp GGTTCTTCSEEE
T ss_pred HHccCCCCCEEE
Confidence 345555554443
No 88
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.73 E-value=4.4e-17 Score=129.09 Aligned_cols=161 Identities=16% Similarity=0.173 Sum_probs=111.5
Q ss_pred eeEEecCCCCcccCC-CCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCC
Q psy14766 36 RTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114 (207)
Q Consensus 36 ~~~~c~~~~l~~~p~-~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n 114 (207)
+.++.+++.+..++. ...++++.+++++|.++.+++ +. .+++|++|++++|.++.+++ +..+++|+.|++++|
T Consensus 180 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~--~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 180 YSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VA--NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN 253 (347)
T ss_dssp SEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GG--GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEccCCcccccccccCCCccceeecccCCCCCCch--hh--cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCC
Confidence 344444444444443 112355555555555555444 33 56778888888888777754 777888888888888
Q ss_pred CCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCchh
Q psy14766 115 LLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSD 194 (207)
Q Consensus 115 ~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~ 194 (207)
.++.++....+++|+.|++++|.++.++ .+..+++|+.|++++|.+++.++..+.++++|+.|++++|++++..+ +
T Consensus 254 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~ 329 (347)
T 4fmz_A 254 QISDINAVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L 329 (347)
T ss_dssp CCCCCGGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--G
T ss_pred ccCCChhHhcCCCcCEEEccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--h
Confidence 8777654333778888888888888763 37778888888888888888777778888888888888888887655 6
Q ss_pred hhhcccccCcCC
Q psy14766 195 AQLAKGRAHDFR 206 (207)
Q Consensus 195 ~~l~~~~~~~~~ 206 (207)
..+++++.+.+.
T Consensus 330 ~~l~~L~~L~l~ 341 (347)
T 4fmz_A 330 ASLSKMDSADFA 341 (347)
T ss_dssp GGCTTCSEESSS
T ss_pred hhhhccceeehh
Confidence 666676666554
No 89
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=7.1e-18 Score=132.39 Aligned_cols=143 Identities=17% Similarity=0.142 Sum_probs=107.7
Q ss_pred CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc---ccccce
Q psy14766 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY---IPYLKS 130 (207)
Q Consensus 54 ~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~---~~~L~~ 130 (207)
++++.|++++|.+++++.. .+++|++|++++|+++.+.+..|..+++|+.|++++|.++.++...+ +++|+.
T Consensus 99 ~~L~~L~l~~n~l~~~~~~-----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 173 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCS-----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (317)
T ss_dssp TTCCEEECCSSCCSEEEEC-----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CCcCEEECCCCccCCcCcc-----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCE
Confidence 3455555555555544433 24678889999999888888788888999999999999887654433 688999
Q ss_pred eeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCchhhhhcccccCcC
Q psy14766 131 INLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAKGRAHDF 205 (207)
Q Consensus 131 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~~~~~~~ 205 (207)
|++++|.++.++. ...+++|++|++++|.++++++. +..+++|+.|++++|.++.. +..+..+++++.+.+
T Consensus 174 L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 174 LNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDL 244 (317)
T ss_dssp EECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEEC
T ss_pred EECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccch-hhHhhcCCCCCEEEc
Confidence 9999999888854 34588999999999999998866 77888999999999999864 445666666665544
No 90
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.73 E-value=1e-16 Score=136.85 Aligned_cols=171 Identities=17% Similarity=0.189 Sum_probs=123.6
Q ss_pred CeeEEecCCCCcccCCCCCC----CceEEEeecCCccccchhhhh-----hcCCCcceEEEecCCcceeeCchhhcCCCC
Q psy14766 35 KRTVECIDRNFYTIPEGIDL----DTQVLDLSSNNINVLQKEIFL-----QMGITNIQKLYLRKCKLEFVDDRAFRGVTN 105 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~~----~l~~L~ls~n~i~~~~~~~~~-----~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~ 105 (207)
.+.++.+++.++.+|..+.. +++.|++++|.+.+..+..+. .+.+.+|+.|++++|.++.+++..|..+++
T Consensus 379 L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~ 458 (636)
T 4eco_A 379 VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458 (636)
T ss_dssp CCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCC
T ss_pred CcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCC
Confidence 45677777777777765431 577788888877765444332 112457888888888888887777777888
Q ss_pred CCEEEcCCCCCCCcCCccc--cc-------ccceeeccCCcccccccccc-CCCCCccEEecCCCceeeeccccCCCCCC
Q psy14766 106 MDELDLSDNLLSTVPSLIY--IP-------YLKSINLAHNPIHQISSYSF-QSTPGIRYIDMSNCQIHTIYSEAFYGSDQ 175 (207)
Q Consensus 106 L~~L~l~~n~l~~~~~~~~--~~-------~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 175 (207)
|+.|++++|.++.+|...+ .. +|+.|++++|+++.++...+ ..+++|+.|++++|+++++|. .+.++++
T Consensus 459 L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~ 537 (636)
T 4eco_A 459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT-QPLNSST 537 (636)
T ss_dssp CSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCC-GGGGCSS
T ss_pred CCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcCh-hhhcCCC
Confidence 8888888888888877666 22 78888888888887665432 378888888888888888654 4667888
Q ss_pred ccEEEe------CCCCCCCCCCchhhhhcccccCcCC
Q psy14766 176 IRRPTI------TGQWKPRQNEDSDAQLAKGRAHDFR 206 (207)
Q Consensus 176 L~~l~l------~~n~l~~~~~~~~~~l~~~~~~~~~ 206 (207)
|+.|++ ++|.+.+..|..+..+++++.+.+.
T Consensus 538 L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred CCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 888888 4567777777777777777666543
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=3.5e-17 Score=119.94 Aligned_cols=142 Identities=13% Similarity=0.124 Sum_probs=120.5
Q ss_pred CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCC-cCCccc-cccccee
Q psy14766 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST-VPSLIY-IPYLKSI 131 (207)
Q Consensus 54 ~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~-~~~L~~L 131 (207)
+.++.|++++|.++.++ .+. .+++|++|++++|.++.+ ..+..+++|+.|++++|.++. .+.... +++|+.|
T Consensus 44 ~~L~~L~l~~n~i~~l~--~l~--~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT--GIE--YAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HTCCEEEEESSCCSCCT--TGG--GCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred CCccEEeccCCCccChH--HHh--cCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 47999999999999887 344 689999999999987766 378999999999999999985 344333 8999999
Q ss_pred eccCCccccccccccCCCCCccEEecCCCc-eeeeccccCCCCCCccEEEeCCCCCCCCCCchhhhhcccccCcC
Q psy14766 132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAKGRAHDF 205 (207)
Q Consensus 132 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~~~~~~~ 205 (207)
++++|.++...+..+..+++|++|++++|. ++.++ .+.++++|+.|++++|.++... .+..+++++.+.+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l 188 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYA 188 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEE
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEe
Confidence 999999998777778999999999999998 88886 4788999999999999998754 6677777776654
No 92
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=1.2e-17 Score=130.82 Aligned_cols=155 Identities=14% Similarity=0.133 Sum_probs=126.0
Q ss_pred CCeeEEecCCCCc-ccCCCC----CCCceEEEeecCCccccchhhhhhcCC-----CcceEEEecCCcceeeCchhhcCC
Q psy14766 34 GKRTVECIDRNFY-TIPEGI----DLDTQVLDLSSNNINVLQKEIFLQMGI-----TNIQKLYLRKCKLEFVDDRAFRGV 103 (207)
Q Consensus 34 ~~~~~~c~~~~l~-~~p~~~----~~~l~~L~ls~n~i~~~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~f~~l 103 (207)
..+.++.+++.+. .+|..+ .++++.|++++|.+++++ ..+. .+ ++|++|++++|+++.+++..|+++
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~--~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLA--ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHH--HHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh-HHHH--HHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4677888888887 577754 368999999999999884 4444 34 899999999999999998999999
Q ss_pred CCCCEEEcCCCCCCC---cCCcc--c-ccccceeeccCCccccc---cccccCCCCCccEEecCCCceeeecc-ccCCCC
Q psy14766 104 TNMDELDLSDNLLST---VPSLI--Y-IPYLKSINLAHNPIHQI---SSYSFQSTPGIRYIDMSNCQIHTIYS-EAFYGS 173 (207)
Q Consensus 104 ~~L~~L~l~~n~l~~---~~~~~--~-~~~L~~L~l~~n~i~~~---~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l 173 (207)
++|+.|++++|.+.. ++... . +++|+.|++++|+++.+ +...+..+++|++|++++|.+++.++ ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 999999999999753 23222 2 78999999999999844 33445678999999999999998663 556678
Q ss_pred CCccEEEeCCCCCCCCCC
Q psy14766 174 DQIRRPTITGQWKPRQNE 191 (207)
Q Consensus 174 ~~L~~l~l~~n~l~~~~~ 191 (207)
++|+.|++++|.++..+.
T Consensus 253 ~~L~~L~Ls~N~l~~ip~ 270 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQVPK 270 (312)
T ss_dssp TTCCEEECTTSCCSSCCS
T ss_pred CCCCEEECCCCccChhhh
Confidence 999999999999995544
No 93
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=1.3e-17 Score=138.25 Aligned_cols=165 Identities=16% Similarity=0.115 Sum_probs=115.0
Q ss_pred CeeEEecCCCCcccCC-CCCCCceEEEeecCCccccchh----------------hhhhcCCCcceEEEecCCcceeeCc
Q psy14766 35 KRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKE----------------IFLQMGITNIQKLYLRKCKLEFVDD 97 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~-~~~~~l~~L~ls~n~i~~~~~~----------------~~~~~~~~~L~~L~l~~n~l~~~~~ 97 (207)
...++.+++.+..+++ ...++++.|++++|.++++++. ... .+++|+.|++++|.++.+.+
T Consensus 60 L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~ 137 (487)
T 3oja_A 60 LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRD 137 (487)
T ss_dssp CCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGG
T ss_pred CCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCc
Confidence 4556666665554333 1123555555555555443321 001 24678888899988888888
Q ss_pred hhhcCCCCCCEEEcCCCCCCCcCCccc---ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCC
Q psy14766 98 RAFRGVTNMDELDLSDNLLSTVPSLIY---IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSD 174 (207)
Q Consensus 98 ~~f~~l~~L~~L~l~~n~l~~~~~~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 174 (207)
..|+.+++|+.|++++|.++..+...+ +++|+.|++++|.++++++ ...+++|++|+|++|.++++++. +..++
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~ 214 (487)
T 3oja_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAA 214 (487)
T ss_dssp BCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGT
T ss_pred hhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCC
Confidence 888888899999999998886443332 6889999999999888755 44688999999999999998876 77888
Q ss_pred CccEEEeCCCCCCCCCCchhhhhcccccCcC
Q psy14766 175 QIRRPTITGQWKPRQNEDSDAQLAKGRAHDF 205 (207)
Q Consensus 175 ~L~~l~l~~n~l~~~~~~~~~~l~~~~~~~~ 205 (207)
+|+.|++++|.+++. |..+..++.++.+.+
T Consensus 215 ~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l 244 (487)
T 3oja_A 215 GVTWISLRNNKLVLI-EKALRFSQNLEHFDL 244 (487)
T ss_dssp TCSEEECTTSCCCEE-CTTCCCCTTCCEEEC
T ss_pred CccEEEecCCcCccc-chhhccCCCCCEEEc
Confidence 999999999998864 444555555555443
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=6.8e-17 Score=135.82 Aligned_cols=151 Identities=13% Similarity=0.170 Sum_probs=94.3
Q ss_pred CCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCC
Q psy14766 34 GKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113 (207)
Q Consensus 34 ~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~ 113 (207)
..+.++++++.+..+|..++++++.|++++|.++.+| . .+++|+.|++++|+++.++. |.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip-~-----~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP-E-----LPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC-C-----CCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc-c-----ccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence 4678999999999999888888999999999988877 2 35677788888777777643 443 566666666
Q ss_pred CCCCCcCCcccccc--------------------cceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCC
Q psy14766 114 NLLSTVPSLIYIPY--------------------LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGS 173 (207)
Q Consensus 114 n~l~~~~~~~~~~~--------------------L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 173 (207)
|.++.+|. .+++ |+.|++++|.++.++. +. ++|++|++++|.|+.+|. +..
T Consensus 130 N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~--~~~- 200 (571)
T 3cvr_A 130 NQLTMLPE--LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA--VPV- 200 (571)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC--CC--
T ss_pred CcCCCCCC--cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh--HHH-
Confidence 66665554 3344 4445555555444333 22 556666666666665554 322
Q ss_pred CCc-------cEEEeCCCCCCCCCCchhhhhcccccCcC
Q psy14766 174 DQI-------RRPTITGQWKPRQNEDSDAQLAKGRAHDF 205 (207)
Q Consensus 174 ~~L-------~~l~l~~n~l~~~~~~~~~~l~~~~~~~~ 205 (207)
+| +.|++++|.++.. |..+..+++++.+.+
T Consensus 201 -~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 201 -RNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIIL 237 (571)
T ss_dssp --------CCEEEECCSSCCCCC-CGGGGGSCTTEEEEC
T ss_pred -hhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEe
Confidence 45 6666666666653 333434555554443
No 95
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.71 E-value=4.7e-17 Score=138.92 Aligned_cols=169 Identities=14% Similarity=0.165 Sum_probs=134.9
Q ss_pred CeeEEecCCCCcccCCCCC--CC-ceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhc-------CCC
Q psy14766 35 KRTVECIDRNFYTIPEGID--LD-TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR-------GVT 104 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~--~~-l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~-------~l~ 104 (207)
.+.++.+++.+..+|..+. ++ ++.|++++|.++.+|... ....+++|+.|++++|.++...|..|. .++
T Consensus 355 L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIF-DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp ESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCC-CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred CCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhh-hhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 4566777777777777654 35 888899998888776533 311244899999999999887777777 778
Q ss_pred CCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCC-------CccEEecCCCceeeeccccC-CCCC
Q psy14766 105 NMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTP-------GIRYIDMSNCQIHTIYSEAF-YGSD 174 (207)
Q Consensus 105 ~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~-------~L~~L~L~~n~i~~~~~~~~-~~l~ 174 (207)
+|+.|++++|.++.+|...+ +++|+.|++++|.++.++...+.... +|++|++++|.++.++.... ..++
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~ 513 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLP 513 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCT
T ss_pred CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCC
Confidence 99999999999999888766 78999999999999988776555443 89999999999998886543 4899
Q ss_pred CccEEEeCCCCCCCCCCchhhhhcccccCcC
Q psy14766 175 QIRRPTITGQWKPRQNEDSDAQLAKGRAHDF 205 (207)
Q Consensus 175 ~L~~l~l~~n~l~~~~~~~~~~l~~~~~~~~ 205 (207)
+|+.|++++|.+++ .|..+..+++++.+.+
T Consensus 514 ~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 514 YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGI 543 (636)
T ss_dssp TCCEEECCSSCCSS-CCCGGGGCSSCCEEEC
T ss_pred CcCEEECCCCCCCC-cChhhhcCCCCCEEEC
Confidence 99999999999998 6777778887777655
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=1e-16 Score=124.40 Aligned_cols=150 Identities=13% Similarity=0.171 Sum_probs=128.8
Q ss_pred CCeeEEecCCCCcccCC-CCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcC
Q psy14766 34 GKRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (207)
Q Consensus 34 ~~~~~~c~~~~l~~~p~-~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~ 112 (207)
..+.++++++.++.++. .-.++++.|++++|.++.++. +. .+++|+.|++++|.++.+ ..+..+++|+.|+++
T Consensus 69 ~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~--~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~ 142 (291)
T 1h6t_A 69 NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LK--DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLG 142 (291)
T ss_dssp TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GT--TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECC
T ss_pred CCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hc--cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEcc
Confidence 46789999999998886 223689999999999998765 44 789999999999999997 478899999999999
Q ss_pred CCCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCc
Q psy14766 113 DNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNED 192 (207)
Q Consensus 113 ~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~ 192 (207)
+|.++.++....+++|+.|++++|.+..+++ +..+++|+.|++++|.+++++. +..+++|+.|++++|++......
T Consensus 143 ~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 143 NNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp SSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEEEEEECCCEE
T ss_pred CCcCCcchhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh--hccCCCCCEEECcCCcccCCccc
Confidence 9999988433338999999999999999876 8899999999999999999863 78899999999999998765443
Q ss_pred h
Q psy14766 193 S 193 (207)
Q Consensus 193 ~ 193 (207)
.
T Consensus 219 ~ 219 (291)
T 1h6t_A 219 H 219 (291)
T ss_dssp C
T ss_pred c
Confidence 3
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=1.8e-16 Score=133.30 Aligned_cols=151 Identities=13% Similarity=0.182 Sum_probs=107.1
Q ss_pred CeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhh-c---------------CCCcceEEEecCCcceeeCch
Q psy14766 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQ-M---------------GITNIQKLYLRKCKLEFVDDR 98 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~-~---------------~~~~L~~L~l~~n~l~~~~~~ 98 (207)
.+.++++++.++.+| ...++++.|++++|.++.++. +.. + .+++|+.|++++|.++.++.
T Consensus 82 L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~--l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~- 157 (571)
T 3cvr_A 82 ITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE--LPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPE- 157 (571)
T ss_dssp CSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-
T ss_pred CCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch--hhcCCCEEECCCCcCCCCCCcCccccEEeCCCCccCcCCC-
Confidence 566777777777777 555667777777776666554 220 0 12445555555555555432
Q ss_pred hhcCCCCCCEEEcCCCCCCCcCCcccccccceeeccCCccccccccccCCCCCc-------cEEecCCCceeeeccccCC
Q psy14766 99 AFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGI-------RYIDMSNCQIHTIYSEAFY 171 (207)
Q Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L-------~~L~L~~n~i~~~~~~~~~ 171 (207)
.+++|+.|++++|.++.+|. +.++|+.|++++|.++.++. +.. +| +.|++++|.|+.+|... .
T Consensus 158 ---~l~~L~~L~Ls~N~L~~lp~--l~~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l-~ 227 (571)
T 3cvr_A 158 ---LPTSLEVLSVRNNQLTFLPE--LPESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCRENRITHIPENI-L 227 (571)
T ss_dssp ---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSSCCC--CC----------CCEEEECCSSCCCCCCGGG-G
T ss_pred ---cCCCcCEEECCCCCCCCcch--hhCCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecCCCcceecCHHH-h
Confidence 35677777777777777776 33789999999999998876 443 67 99999999999998764 4
Q ss_pred CCCCccEEEeCCCCCCCCCCchhhhhcc
Q psy14766 172 GSDQIRRPTITGQWKPRQNEDSDAQLAK 199 (207)
Q Consensus 172 ~l~~L~~l~l~~n~l~~~~~~~~~~l~~ 199 (207)
.+++|+.|++++|++++..+..+..+..
T Consensus 228 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 228 SLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp GSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred cCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 5999999999999999888888777643
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=4.6e-17 Score=127.31 Aligned_cols=143 Identities=12% Similarity=0.099 Sum_probs=71.0
Q ss_pred CceEEEeecCCccccchhhhhhcCCCcceEEEecCCccee---eC-chhhcCCCCCCEEEcCCCCCCCcCCc---cc--c
Q psy14766 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF---VD-DRAFRGVTNMDELDLSDNLLSTVPSL---IY--I 125 (207)
Q Consensus 55 ~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~---~~-~~~f~~l~~L~~L~l~~n~l~~~~~~---~~--~ 125 (207)
++++|++++|.+..+++..+. .+++|++|++++|++.. +. ...+..+++|+.|++++|+++.++.. .+ +
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVR--AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCC--CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred CCCEEEeeCCCcchhhHHHhc--cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 444444444444444444443 34444445544444332 11 11123444444555554444433332 11 4
Q ss_pred cccceeeccCCccccccccccCCC---CCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCchhhhhccccc
Q psy14766 126 PYLKSINLAHNPIHQISSYSFQST---PGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAKGRA 202 (207)
Q Consensus 126 ~~L~~L~l~~n~i~~~~~~~~~~l---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~~~~ 202 (207)
++|++|++++|++....+..+..+ ++|++|++++|+++.++.... ++|+.|++++|++++.+. +..+++++.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~~~~--~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNRAPQ--PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCSCCC--TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCCCch--hhhCCCccE
Confidence 566666666666666544334444 467777777777766654322 466677777777765421 344444444
Q ss_pred Cc
Q psy14766 203 HD 204 (207)
Q Consensus 203 ~~ 204 (207)
+.
T Consensus 299 L~ 300 (310)
T 4glp_A 299 LT 300 (310)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 99
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.69 E-value=1.5e-16 Score=126.16 Aligned_cols=111 Identities=22% Similarity=0.340 Sum_probs=101.3
Q ss_pred CCCCC-EeeecCCCeeEEecCC-CCcccCCCCCC--CceEEEeec-CCccccchhhhhhcCCCcceEEEecCCcceeeCc
Q psy14766 23 CPLGC-SCKWKAGKRTVECIDR-NFYTIPEGIDL--DTQVLDLSS-NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97 (207)
Q Consensus 23 cp~~c-~c~~~~~~~~~~c~~~-~l~~~p~~~~~--~l~~L~ls~-n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 97 (207)
||+.| .|.+ ..++|++. +++.+|. ++. +++.|++++ |.++.+++..|. ++++|+.|++++|.++.+++
T Consensus 1 cp~~c~~C~~----~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~ 73 (347)
T 2ifg_A 1 CPDACCPHGS----SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLR--GLGELRNLTIVKSGLRFVAP 73 (347)
T ss_dssp CCSSSCCSSS----SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSC--SCCCCSEEECCSSCCCEECT
T ss_pred CCCcCccccC----CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhc--cccCCCEEECCCCccceeCH
Confidence 99999 9984 67999999 9999999 763 799999996 999999999888 89999999999999999999
Q ss_pred hhhcCCCCCCEEEcCCCCCCCcCCccc-ccccceeeccCCcccc
Q psy14766 98 RAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQ 140 (207)
Q Consensus 98 ~~f~~l~~L~~L~l~~n~l~~~~~~~~-~~~L~~L~l~~n~i~~ 140 (207)
..|.++++|+.|+|++|.++.+|...+ ...|+.|++.+|.+..
T Consensus 74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp TGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred HHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccC
Confidence 999999999999999999999998877 4449999999998874
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=6.1e-17 Score=126.62 Aligned_cols=165 Identities=13% Similarity=0.062 Sum_probs=125.6
Q ss_pred CeeEEecCCCCccc-CCCC----CCCceEEEeecCCccccch----hhhhhcCCCcceEEEecCCcceeeCchhhcCCCC
Q psy14766 35 KRTVECIDRNFYTI-PEGI----DLDTQVLDLSSNNINVLQK----EIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN 105 (207)
Q Consensus 35 ~~~~~c~~~~l~~~-p~~~----~~~l~~L~ls~n~i~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~ 105 (207)
.+.++.+++.+... |..+ .++++.|++++|.++...+ ..+. .+++|++|++++|.+..+.+..|+.+++
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW--LKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT--BCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh--hccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 56677888877754 4443 3589999999999986332 3333 5889999999999999998899999999
Q ss_pred CCEEEcCCCCCCC---cCCcc--c-ccccceeeccCCcccccccc---ccCCCCCccEEecCCCceeeeccccCCCC---
Q psy14766 106 MDELDLSDNLLST---VPSLI--Y-IPYLKSINLAHNPIHQISSY---SFQSTPGIRYIDMSNCQIHTIYSEAFYGS--- 173 (207)
Q Consensus 106 L~~L~l~~n~l~~---~~~~~--~-~~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~L~~n~i~~~~~~~~~~l--- 173 (207)
|+.|++++|++.. ++... . +++|+.|++++|+++.++.. .++.+++|++|++++|.+++..+..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 9999999998753 33322 2 78999999999999865542 35678999999999999999854445555
Q ss_pred CCccEEEeCCCCCCCCCCchhhhhcccccCc
Q psy14766 174 DQIRRPTITGQWKPRQNEDSDAQLAKGRAHD 204 (207)
Q Consensus 174 ~~L~~l~l~~n~l~~~~~~~~~~l~~~~~~~ 204 (207)
++|+.|++++|.++..+.... ++++.+.
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~ 278 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKGLP---AKLRVLD 278 (310)
T ss_dssp TTCCCEECCSSCCCSCCSCCC---SCCSCEE
T ss_pred CcCCEEECCCCCCCchhhhhc---CCCCEEE
Confidence 699999999999996544332 3444443
No 101
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=1.2e-16 Score=135.80 Aligned_cols=151 Identities=14% Similarity=0.194 Sum_probs=113.6
Q ss_pred CCCCCCEeeecCCCeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhc
Q psy14766 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101 (207)
Q Consensus 22 ~cp~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~ 101 (207)
+||..|.|... ..+.++|+++.++.+|..++++++.|++++|.++.++. .+++|+.|++++|+++.++.
T Consensus 30 ~~~~~~~c~~~-~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l~~lp~---- 98 (622)
T 3g06_A 30 VVQKMRACLNN-GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSLPV---- 98 (622)
T ss_dssp HHHHHHHHHHH-CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC------CCTTCCEEEECSCCCSCCCC----
T ss_pred cCcccccccCC-CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC------cCCCCCEEEcCCCcCCcCCC----
Confidence 45667777753 36789999999999999998999999999999998876 25789999999999998864
Q ss_pred CCCCCCEEEcCCCCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccc--cC---------
Q psy14766 102 GVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE--AF--------- 170 (207)
Q Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~--~~--------- 170 (207)
.+++|+.|++++|.++.+|. .+++|+.|++++|.++.++.. +++|++|++++|.+++++.. .+
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~ 172 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPALPSELCKLWAYNNQ 172 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCCccCCCCEEECCCCC
Confidence 67889999999998888776 356777777777777776542 36677777777776665431 01
Q ss_pred -----CCCCCccEEEeCCCCCCCC
Q psy14766 171 -----YGSDQIRRPTITGQWKPRQ 189 (207)
Q Consensus 171 -----~~l~~L~~l~l~~n~l~~~ 189 (207)
..+++|+.|++++|.+++.
T Consensus 173 l~~l~~~~~~L~~L~Ls~N~l~~l 196 (622)
T 3g06_A 173 LTSLPMLPSGLQELSVSDNQLASL 196 (622)
T ss_dssp CSCCCCCCTTCCEEECCSSCCSCC
T ss_pred CCCCcccCCCCcEEECCCCCCCCC
Confidence 1125667777777777654
No 102
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=139.08 Aligned_cols=159 Identities=21% Similarity=0.203 Sum_probs=130.3
Q ss_pred CCeeEEecCCCCcccCC-CCC--CCceEEEeecCC-ccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEE
Q psy14766 34 GKRTVECIDRNFYTIPE-GID--LDTQVLDLSSNN-INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDEL 109 (207)
Q Consensus 34 ~~~~~~c~~~~l~~~p~-~~~--~~l~~L~ls~n~-i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L 109 (207)
..+.++.+++.++.+++ .+. ++++.|++++|. +..+++..+. ++++|+.|++++|.++.+.++.|+++++|++|
T Consensus 25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~--~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR--NLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS--SCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc--CCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 46789999999998854 333 599999999995 4577788887 89999999999999999999999999999999
Q ss_pred EcCCCCCCC-cCCc-cc--ccccceeeccCCccccccc-cccCCCCCccEEecCCCceeeeccccCCCC--CCccEEEeC
Q psy14766 110 DLSDNLLST-VPSL-IY--IPYLKSINLAHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTIYSEAFYGS--DQIRRPTIT 182 (207)
Q Consensus 110 ~l~~n~l~~-~~~~-~~--~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l--~~L~~l~l~ 182 (207)
++++|.++. ++.. .+ +++|+.|++++|.+.+..+ ..++.+++|++|++++|.++++.+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 999999985 4443 23 8999999999999988765 568999999999999999988776666555 667777777
Q ss_pred CCCCCCCCCchh
Q psy14766 183 GQWKPRQNEDSD 194 (207)
Q Consensus 183 ~n~l~~~~~~~~ 194 (207)
+|.+.+..+..+
T Consensus 183 ~n~l~~~~~~~~ 194 (844)
T 3j0a_A 183 ANSLYSRVSVDW 194 (844)
T ss_dssp CSBSCCCCCCCC
T ss_pred CCccccccccch
Confidence 777766544433
No 103
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=8.2e-16 Score=134.84 Aligned_cols=169 Identities=17% Similarity=0.155 Sum_probs=116.7
Q ss_pred CeeEEecCCCCcccCCCCCC----CceEEEeecCCccccchhhh---hhcCCCcceEEEecCCcceeeCchhhcCCCCCC
Q psy14766 35 KRTVECIDRNFYTIPEGIDL----DTQVLDLSSNNINVLQKEIF---LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~~----~l~~L~ls~n~i~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~ 107 (207)
.+.++.+++.+..+|..+.. +++.|++++|.+.+..+... ..+..++|+.|++++|.++.++...+..+++|+
T Consensus 621 L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~ 700 (876)
T 4ecn_A 621 VEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS 700 (876)
T ss_dssp CCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCS
T ss_pred CCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCC
Confidence 45566666666666654431 36667777776654332211 111234788888888888877766677788888
Q ss_pred EEEcCCCCCCCcCCccc-cc--------ccceeeccCCccccccccccC--CCCCccEEecCCCceeeeccccCCCCCCc
Q psy14766 108 ELDLSDNLLSTVPSLIY-IP--------YLKSINLAHNPIHQISSYSFQ--STPGIRYIDMSNCQIHTIYSEAFYGSDQI 176 (207)
Q Consensus 108 ~L~l~~n~l~~~~~~~~-~~--------~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 176 (207)
.|++++|.++.+|...+ .. +|+.|++++|+++.++.. +. .+++|+.|++++|.++++|. .+.++++|
T Consensus 701 ~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~-l~~~~l~~L~~L~Ls~N~L~~lp~-~l~~L~~L 778 (876)
T 4ecn_A 701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD-FRATTLPYLSNMDVSYNCFSSFPT-QPLNSSQL 778 (876)
T ss_dssp EEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGG-GSTTTCTTCCEEECCSSCCSSCCC-GGGGCTTC
T ss_pred EEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHH-hhhccCCCcCEEEeCCCCCCccch-hhhcCCCC
Confidence 88888888887777665 22 788888888888876654 44 78888888888888888754 36677888
Q ss_pred cEEEeCC------CCCCCCCCchhhhhcccccCcC
Q psy14766 177 RRPTITG------QWKPRQNEDSDAQLAKGRAHDF 205 (207)
Q Consensus 177 ~~l~l~~------n~l~~~~~~~~~~l~~~~~~~~ 205 (207)
+.|++++ |.+.+..|..+..+++++.+.+
T Consensus 779 ~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp CEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred CEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence 8888865 6677777777777777666554
No 104
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.68 E-value=5.9e-17 Score=116.65 Aligned_cols=129 Identities=13% Similarity=0.209 Sum_probs=108.5
Q ss_pred CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc--cccccee
Q psy14766 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI 131 (207)
Q Consensus 54 ~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L 131 (207)
.+++.|++++|.++.++. ... ..++|+.|++++|.++.+ ..|..+++|+.|++++|.++.++...+ +++|+.|
T Consensus 19 ~~L~~L~l~~n~l~~i~~-~~~--~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN-LGA--TLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TSCEEEECTTSCCCSCCC-GGG--GTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCceEEEeeCCCCchhHH-hhh--cCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 478999999999998743 332 234899999999999988 478999999999999999998887664 8899999
Q ss_pred eccCCccccccc-cccCCCCCccEEecCCCceeeeccc---cCCCCCCccEEEeCCCCCC
Q psy14766 132 NLAHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTIYSE---AFYGSDQIRRPTITGQWKP 187 (207)
Q Consensus 132 ~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~---~~~~l~~L~~l~l~~n~l~ 187 (207)
++++|.+..++. ..+..+++|++|++++|.++.++.. .+..+++|+.+++++|...
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999988765 3578899999999999999988754 5778899999999988765
No 105
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=2.6e-17 Score=115.22 Aligned_cols=122 Identities=21% Similarity=0.295 Sum_probs=55.9
Q ss_pred CceEEEeecCCcc--ccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCC-cCCccc-ccccce
Q psy14766 55 DTQVLDLSSNNIN--VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST-VPSLIY-IPYLKS 130 (207)
Q Consensus 55 ~l~~L~ls~n~i~--~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~-~~~L~~ 130 (207)
+++.|++++|.++ .++. .+. .+++|+.|++++|.++.+ ..++.+++|+.|++++|.++. +|.... +++|+.
T Consensus 18 ~l~~L~l~~n~l~~~~~~~-~~~--~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEG-LTD--EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GCSEEECTTCBCBTTBCCS-CCT--TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred cCeEEEccCCcCChhHHHH-HHh--hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 4455555555554 2332 222 344555555555555444 344445555555555555443 222222 444555
Q ss_pred eeccCCcccccc-ccccCCCCCccEEecCCCceeeecc---ccCCCCCCccEEEe
Q psy14766 131 INLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYS---EAFYGSDQIRRPTI 181 (207)
Q Consensus 131 L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~l~l 181 (207)
|++++|.+++++ +..+..+++|++|++++|.++++++ ..+..+++|+.|++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 555555544432 1234444555555555555544443 23444444444443
No 106
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.67 E-value=5.9e-16 Score=122.56 Aligned_cols=162 Identities=12% Similarity=0.174 Sum_probs=117.4
Q ss_pred CeeEEecCCCCcccCC-CCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCC
Q psy14766 35 KRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~-~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~ 113 (207)
.+.++.+++.+..++. ...++++.|++++|.+..+++ +. .+++|+.+++++|.+..+.+ +..+++|+.|++++
T Consensus 157 L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 157 LNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LA--SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGN 230 (347)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG--GG--GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCS
T ss_pred CcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc--cc--CCCccceeecccCCCCCCch--hhcCCcCCEEEccC
Confidence 3445555555555443 112467777777777766655 33 56777777777777776643 77788888888888
Q ss_pred CCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCch
Q psy14766 114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDS 193 (207)
Q Consensus 114 n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~ 193 (207)
|.++.++....+++|+.|++++|.+..++ .+..+++|++|++++|.+++++ .+..+++|+.|++++|.+++..++.
T Consensus 231 n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 231 NKITDLSPLANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp SCCCCCGGGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred CccCCCcchhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEEccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhH
Confidence 88887766323788888888888888763 4778889999999999888874 4677888999999999988877777
Q ss_pred hhhhcccccCcCC
Q psy14766 194 DAQLAKGRAHDFR 206 (207)
Q Consensus 194 ~~~l~~~~~~~~~ 206 (207)
+..+++++.+.+.
T Consensus 307 l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 307 IGGLTNLTTLFLS 319 (347)
T ss_dssp HHTCTTCSEEECC
T ss_pred hhccccCCEEEcc
Confidence 8777777766543
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=7e-16 Score=122.60 Aligned_cols=166 Identities=17% Similarity=0.253 Sum_probs=135.6
Q ss_pred CeeEEecCCCCcccCCCCC---CCceEEEeecCCcc-ccchhhhhhcCCCcceE-EEecCCcceeeCchhhcCCCCCCEE
Q psy14766 35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNIN-VLQKEIFLQMGITNIQK-LYLRKCKLEFVDDRAFRGVTNMDEL 109 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~---~~l~~L~ls~n~i~-~~~~~~~~~~~~~~L~~-L~l~~n~l~~~~~~~f~~l~~L~~L 109 (207)
.+.++.+++.++.+|.... +++++|++++|.+. .+++.+|. +++++++ +.+.+|+++.++++.|.++++|+.|
T Consensus 32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~--~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS--NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC--SCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh--cchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 5779999999999998643 58999999999985 57778887 7788765 5567799999999999999999999
Q ss_pred EcCCCCCCCcCCcc-------------------------c---ccccceeeccCCccccccccccCCCCCccEEecC-CC
Q psy14766 110 DLSDNLLSTVPSLI-------------------------Y---IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMS-NC 160 (207)
Q Consensus 110 ~l~~n~l~~~~~~~-------------------------~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~-~n 160 (207)
++++|+++.++... + ...++.|++++|+++.+++..+ ...+|+.++++ +|
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCC
Confidence 99998876554321 1 1246678999999999888765 45689999997 58
Q ss_pred ceeeeccccCCCCCCccEEEeCCCCCCCCCCchhhhhcccccC
Q psy14766 161 QIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAKGRAH 203 (207)
Q Consensus 161 ~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~~~~~ 203 (207)
.++.+++++|.++++|+.|++++|+++..++..+..+.+++.+
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l 231 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 231 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECT
T ss_pred cccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhc
Confidence 8999999999999999999999999999888777777666544
No 108
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.67 E-value=9.8e-16 Score=126.13 Aligned_cols=136 Identities=20% Similarity=0.275 Sum_probs=69.8
Q ss_pred CceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCcccccccceeecc
Q psy14766 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLA 134 (207)
Q Consensus 55 ~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~ 134 (207)
+++.|++++|.+..+++ +. .+++|+.|++++|.++.+++ +..+++|+.|++++|.++.++....+++|+.|+++
T Consensus 244 ~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAP--LS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 317 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GT--TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECC
T ss_pred CCCEEECCCCccccchh--hh--cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECc
Confidence 44455555554444433 22 34555555555555554432 45555555555555555544432225555555665
Q ss_pred CCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCchhhhhccccc
Q psy14766 135 HNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAKGRA 202 (207)
Q Consensus 135 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~~~~ 202 (207)
+|++.++.+ +..+++|+.|++++|.+++++ .+..+++|+.|++++|++++..+ +..+++++.
T Consensus 318 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 379 (466)
T 1o6v_A 318 FNNISDISP--VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQ 379 (466)
T ss_dssp SSCCSCCGG--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCE
T ss_pred CCcCCCchh--hccCccCCEeECCCCccCCch--hhccCCCCCEEeCCCCccCccch--hhcCCCCCE
Confidence 555555543 445555666666666555552 34555666666666666655443 344444433
No 109
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=3.6e-16 Score=137.07 Aligned_cols=149 Identities=11% Similarity=0.156 Sum_probs=106.1
Q ss_pred CCeeEEecCCCCcc------------------cCCCCC----CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCc
Q psy14766 34 GKRTVECIDRNFYT------------------IPEGID----LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK 91 (207)
Q Consensus 34 ~~~~~~c~~~~l~~------------------~p~~~~----~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~ 91 (207)
..+.++.+++.+.. +|..+. ++++.|++++|.+.+..+..+. .+++|+.|++++|+
T Consensus 449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~--~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY--DLPELQSLNIACNR 526 (876)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG--GCSSCCEEECTTCT
T ss_pred CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh--CCCCCCEEECcCCC
Confidence 35678888888888 888764 5889999999887655556565 67888888888887
Q ss_pred -cee-eCchhhcCC-------CCCCEEEcCCCCCCCcCC--ccc-ccccceeeccCCccccccccccCCCCCccEEecCC
Q psy14766 92 -LEF-VDDRAFRGV-------TNMDELDLSDNLLSTVPS--LIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN 159 (207)
Q Consensus 92 -l~~-~~~~~f~~l-------~~L~~L~l~~n~l~~~~~--~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 159 (207)
++. ..|..+..+ ++|+.|++++|.++.+|. ... +++|+.|++++|.+..++ .++.+++|+.|++++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDY 604 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCS
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcC
Confidence 765 334444443 377788888777777776 333 777777777777777555 467777777777777
Q ss_pred CceeeeccccCCCCCC-ccEEEeCCCCCC
Q psy14766 160 CQIHTIYSEAFYGSDQ-IRRPTITGQWKP 187 (207)
Q Consensus 160 n~i~~~~~~~~~~l~~-L~~l~l~~n~l~ 187 (207)
|.++.++.. +..+++ |+.|++++|.++
T Consensus 605 N~l~~lp~~-l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 605 NQIEEIPED-FCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp SCCSCCCTT-SCEECTTCCEEECCSSCCC
T ss_pred CccccchHH-HhhccccCCEEECcCCCCC
Confidence 777765533 566666 777777777766
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=1.9e-16 Score=110.84 Aligned_cols=127 Identities=13% Similarity=0.130 Sum_probs=108.3
Q ss_pred CCcceEEEecCCcce--eeCchhhcCCCCCCEEEcCCCCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEe
Q psy14766 79 ITNIQKLYLRKCKLE--FVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYID 156 (207)
Q Consensus 79 ~~~L~~L~l~~n~l~--~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 156 (207)
.++++.|++++|.++ .+ +..+..+++|+.|++++|.++.++....+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKL-EGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBC-CSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHH-HHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 578999999999998 55 558899999999999999999873222289999999999999996666677799999999
Q ss_pred cCCCceeeec-cccCCCCCCccEEEeCCCCCCCCCC---chhhhhcccccCcCC
Q psy14766 157 MSNCQIHTIY-SEAFYGSDQIRRPTITGQWKPRQNE---DSDAQLAKGRAHDFR 206 (207)
Q Consensus 157 L~~n~i~~~~-~~~~~~l~~L~~l~l~~n~l~~~~~---~~~~~l~~~~~~~~~ 206 (207)
+++|.+++++ +..+..+++|+.|++++|++++..+ ..+..+++++.+..+
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999999975 3668899999999999999998776 578888888877664
No 111
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.65 E-value=8.9e-16 Score=109.95 Aligned_cols=104 Identities=22% Similarity=0.358 Sum_probs=77.4
Q ss_pred eEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc--ccccceeecc
Q psy14766 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLA 134 (207)
Q Consensus 57 ~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~ 134 (207)
+.+++++|.++.+|.... .+++.|++++|.++.+++..|.++++|+.|++++|+++.++...+ +++|+.|+++
T Consensus 12 ~~l~~s~n~l~~ip~~~~-----~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP-----TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECTTSCCSSCCSCCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccCC-----CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 467888888888776542 567888888888888877778888888888888888777777655 6777777777
Q ss_pred CCccccccccccCCCCCccEEecCCCceeee
Q psy14766 135 HNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165 (207)
Q Consensus 135 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~ 165 (207)
+|+++.+++..+..+++|++|+|++|.++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 7777777766677777777777777766543
No 112
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.65 E-value=1.8e-15 Score=124.56 Aligned_cols=149 Identities=14% Similarity=0.216 Sum_probs=103.0
Q ss_pred CCeeEEecCCCCcccCC-CCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcC
Q psy14766 34 GKRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (207)
Q Consensus 34 ~~~~~~c~~~~l~~~p~-~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~ 112 (207)
..+.+++.+..+..+|. ...+++++|++++|.++.+++ +. .+++|++|++++|.++.+++ +.++++|+.|+++
T Consensus 47 ~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120 (466)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred cccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hh--ccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence 35678888888888775 223688888888888888776 44 67888888888888887754 8888888888888
Q ss_pred CCCCCCcCCcccccccceeeccCCccccccc-------------------cccCCCCCccEEecCCCceeeeccccCCCC
Q psy14766 113 DNLLSTVPSLIYIPYLKSINLAHNPIHQISS-------------------YSFQSTPGIRYIDMSNCQIHTIYSEAFYGS 173 (207)
Q Consensus 113 ~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~-------------------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 173 (207)
+|.++.++....+++|+.|++++|.+..++. ..+..+++|++|++++|.++.++ .+..+
T Consensus 121 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~~l 198 (466)
T 1o6v_A 121 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS--VLAKL 198 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG--GGGGC
T ss_pred CCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh--hhccC
Confidence 8888777652227777777777777665432 11445566666666666666653 24556
Q ss_pred CCccEEEeCCCCCCCCC
Q psy14766 174 DQIRRPTITGQWKPRQN 190 (207)
Q Consensus 174 ~~L~~l~l~~n~l~~~~ 190 (207)
++|+.|++++|.+.+..
T Consensus 199 ~~L~~L~l~~n~l~~~~ 215 (466)
T 1o6v_A 199 TNLESLIATNNQISDIT 215 (466)
T ss_dssp TTCSEEECCSSCCCCCG
T ss_pred CCCCEEEecCCcccccc
Confidence 66666666666665543
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=1.1e-15 Score=129.46 Aligned_cols=152 Identities=14% Similarity=0.170 Sum_probs=129.6
Q ss_pred CCeeEEecCCCCcccCC-CCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcC
Q psy14766 34 GKRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (207)
Q Consensus 34 ~~~~~~c~~~~l~~~p~-~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~ 112 (207)
..+.++++++.+..+|+ .-.++++.|++++|.+..++ .+. .+++|+.|++++|.++.+ ..+..+++|+.|+++
T Consensus 66 ~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~--~l~--~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls 139 (605)
T 1m9s_A 66 NVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS--SLK--DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLG 139 (605)
T ss_dssp TCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT--TST--TCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECC
T ss_pred CCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh--hhc--cCCCCCEEEecCCCCCCC--ccccCCCccCEEECC
Confidence 46789999999998876 22368999999999999876 344 789999999999999987 369999999999999
Q ss_pred CCCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCc
Q psy14766 113 DNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNED 192 (207)
Q Consensus 113 ~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~ 192 (207)
+|.++.++....+++|+.|++++|.+..+++ +..+++|+.|+|++|.+++++ .+..+++|+.|++++|++...+..
T Consensus 140 ~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 140 NNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp SSCCCCCGGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCCC
T ss_pred CCccCCchhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCccc
Confidence 9999988443338999999999999999877 889999999999999999984 488899999999999998876444
Q ss_pred hhh
Q psy14766 193 SDA 195 (207)
Q Consensus 193 ~~~ 195 (207)
...
T Consensus 216 ~~~ 218 (605)
T 1m9s_A 216 HQS 218 (605)
T ss_dssp CCS
T ss_pred ccc
Confidence 433
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=2.3e-16 Score=136.37 Aligned_cols=153 Identities=16% Similarity=0.153 Sum_probs=97.5
Q ss_pred eeEEecCCCCcccCCCCCCCceEEEeecCCccc---------cchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCC
Q psy14766 36 RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINV---------LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106 (207)
Q Consensus 36 ~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~---------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L 106 (207)
+.+.+.+..+..+|... ++.++++.+.+.. ++++.+. .+.+|+.|++++|.+..+++. +..+++|
T Consensus 176 ~~l~L~~n~~~~~~~~~---l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~--~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L 249 (727)
T 4b8c_D 176 PKIELFANGKDEANQAL---LQHKKLSQYSIDEDDDIENRMVMPKDSKY--DDQLWHALDLSNLQIFNISAN-IFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGG-GGGCCSC
T ss_pred ceEEeeCCCCCcchhhH---hhcCccCcccccCccccccceecChhhhc--cCCCCcEEECCCCCCCCCChh-hcCCCCC
Confidence 34555555555555433 3344444444432 3455555 688899999999999888654 4488999
Q ss_pred CEEEcCCCCCCCcCCccc-ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCC
Q psy14766 107 DELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQW 185 (207)
Q Consensus 107 ~~L~l~~n~l~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~ 185 (207)
+.|+|++|.++.+|.... +++|+.|++++|.++.++ ..+..+++|++|+|++|.|+.+|.. |..+++|+.|+|++|.
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLP-AELGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCC-SSGGGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSC
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccC-hhhcCCCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCc
Confidence 999999999998887655 889999999999999774 4588889999999999999988765 8889999999999999
Q ss_pred CCCCCCchhhh
Q psy14766 186 KPRQNEDSDAQ 196 (207)
Q Consensus 186 l~~~~~~~~~~ 196 (207)
+++..++.+..
T Consensus 328 l~~~~p~~~~~ 338 (727)
T 4b8c_D 328 LEKQFLKILTE 338 (727)
T ss_dssp CCSHHHHHHHH
T ss_pred cCCCChHHHhh
Confidence 98877766644
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1.7e-15 Score=119.39 Aligned_cols=101 Identities=22% Similarity=0.328 Sum_probs=90.7
Q ss_pred CCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCcc-EEecCCCceeeeccccCCCCCCccEE
Q psy14766 103 VTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIR-YIDMSNCQIHTIYSEAFYGSDQIRRP 179 (207)
Q Consensus 103 l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~-~L~L~~n~i~~~~~~~~~~l~~L~~l 179 (207)
+++|+.+++++|+++.++..+| +.+|+.+++..| +..+++.+|.++.+|+ .+++.+ .++.+.+.+|.++.+|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 5789999999989999999888 889999999887 8889999999999999 999988 8999999999999999999
Q ss_pred EeCCCCCCCCCCchhhhhcccccCcC
Q psy14766 180 TITGQWKPRQNEDSDAQLAKGRAHDF 205 (207)
Q Consensus 180 ~l~~n~l~~~~~~~~~~l~~~~~~~~ 205 (207)
++++|.++...+..|...++++.+.+
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99999999988889988888877654
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1.1e-15 Score=109.00 Aligned_cols=130 Identities=17% Similarity=0.194 Sum_probs=113.0
Q ss_pred CCeeEEecCCCCc--ccCCCCC--CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEE
Q psy14766 34 GKRTVECIDRNFY--TIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDEL 109 (207)
Q Consensus 34 ~~~~~~c~~~~l~--~~p~~~~--~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L 109 (207)
..+.++.+++.+. .+|..+. ++++.|++++|.++.+ ..+. .+++|++|++++|.++...+..+..+++|+.|
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLP--KLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCC--CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhc--cCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3678999999998 8887653 5899999999999988 5555 78999999999999999667788889999999
Q ss_pred EcCCCCCCCcCC--ccc-ccccceeeccCCccccccc---cccCCCCCccEEecCCCceeeecc
Q psy14766 110 DLSDNLLSTVPS--LIY-IPYLKSINLAHNPIHQISS---YSFQSTPGIRYIDMSNCQIHTIYS 167 (207)
Q Consensus 110 ~l~~n~l~~~~~--~~~-~~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~L~~n~i~~~~~ 167 (207)
++++|.++.++. ... +++|+.|++++|.+..+++ ..+..+++|++|++++|.+.+++.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 999999998763 333 8999999999999999877 578899999999999999998875
No 117
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.63 E-value=2.4e-15 Score=108.11 Aligned_cols=105 Identities=17% Similarity=0.324 Sum_probs=84.3
Q ss_pred eEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc--ccccceeecc
Q psy14766 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLA 134 (207)
Q Consensus 57 ~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~ 134 (207)
+.+++++|.++.+|.... ++++.|++++|.++.+++..|.++++|+.|++++|+++.++...+ +++|+.|+++
T Consensus 15 ~~l~~~~n~l~~iP~~~~-----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-----TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCCccCCCcC-----CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 568888888888877543 578888888888888888888888888888888888888877665 7788888888
Q ss_pred CCccccccccccCCCCCccEEecCCCceeeec
Q psy14766 135 HNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166 (207)
Q Consensus 135 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 166 (207)
+|+++.+++..+..+++|++|++++|.+...+
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 88888877776777888888888888776554
No 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.61 E-value=9.6e-16 Score=110.27 Aligned_cols=126 Identities=17% Similarity=0.212 Sum_probs=104.5
Q ss_pred CCCcceEEEecCCcceeeCchhhcCCC-CCCEEEcCCCCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEe
Q psy14766 78 GITNIQKLYLRKCKLEFVDDRAFRGVT-NMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYID 156 (207)
Q Consensus 78 ~~~~L~~L~l~~n~l~~~~~~~f~~l~-~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 156 (207)
...+++.|++++|.++.+ + .+..+. +|+.|++++|.++.++....+++|+.|++++|.++.+++..+..+++|++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CcCCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 578999999999999987 3 355554 9999999999999874332289999999999999999877678899999999
Q ss_pred cCCCceeeecc-ccCCCCCCccEEEeCCCCCCCCCCc---hhhhhcccccCcC
Q psy14766 157 MSNCQIHTIYS-EAFYGSDQIRRPTITGQWKPRQNED---SDAQLAKGRAHDF 205 (207)
Q Consensus 157 L~~n~i~~~~~-~~~~~l~~L~~l~l~~n~l~~~~~~---~~~~l~~~~~~~~ 205 (207)
+++|.++.++. ..+..+++|+.|++++|+++..+.. .+..+++++.+.+
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence 99999998875 4688899999999999999865443 3677777766554
No 119
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.61 E-value=1.8e-14 Score=118.51 Aligned_cols=96 Identities=24% Similarity=0.288 Sum_probs=52.5
Q ss_pred CeeEEecCCCCcccCCCC--CCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcC
Q psy14766 35 KRTVECIDRNFYTIPEGI--DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~--~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~ 112 (207)
.+.++++++.++.+|. + .+++++|++++|.+++++ +. .+++|++|++++|.++.++ ++++++|+.|+++
T Consensus 44 L~~L~Ls~n~l~~~~~-l~~l~~L~~L~Ls~n~l~~~~---~~--~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 44 LTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTLD---LS--QNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCD 114 (457)
T ss_dssp CCEEECCSSCCCCCTT-GGGCTTCSEEECCSSCCSCCC---CT--TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECC
T ss_pred CCEEEccCCCcccChh-hcccCCCCEEEccCCcCCeEc---cc--cCCCCCEEECcCCCCceee---cCCCCcCCEEECC
Confidence 4566666666666652 2 246666666666666653 33 4556666666666655542 5555555556555
Q ss_pred CCCCCCcCCcccccccceeeccCCcccc
Q psy14766 113 DNLLSTVPSLIYIPYLKSINLAHNPIHQ 140 (207)
Q Consensus 113 ~n~l~~~~~~~~~~~L~~L~l~~n~i~~ 140 (207)
+|.++.++ ...+++|+.|++++|++++
T Consensus 115 ~N~l~~l~-~~~l~~L~~L~l~~N~l~~ 141 (457)
T 3bz5_A 115 TNKLTKLD-VSQNPLLTYLNCARNTLTE 141 (457)
T ss_dssp SSCCSCCC-CTTCTTCCEEECTTSCCSC
T ss_pred CCcCCeec-CCCCCcCCEEECCCCccce
Confidence 55555443 1114455555555555444
No 120
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.61 E-value=2.5e-14 Score=117.58 Aligned_cols=151 Identities=14% Similarity=0.116 Sum_probs=97.4
Q ss_pred CeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCch----------------
Q psy14766 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR---------------- 98 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---------------- 98 (207)
.+.++++++.++.+|-.-.+++++|++++|.+++++ +. .+++|++|++++|+++.++-.
T Consensus 87 L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~---~~--~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~ 161 (457)
T 3bz5_A 87 LTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLD---VS--QNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKI 161 (457)
T ss_dssp CSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCCC---CT--TCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCC
T ss_pred CCEEECcCCCCceeecCCCCcCCEEECCCCcCCeec---CC--CCCcCCEEECCCCccceeccccCCcCCEEECCCCCcc
Confidence 556777777777766443457777777777777654 33 566677777777766655210
Q ss_pred ---hhcCCCCCCEEEcCCCCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCC
Q psy14766 99 ---AFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQ 175 (207)
Q Consensus 99 ---~f~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 175 (207)
.+..+++|+.|++++|.++.++ ...+++|+.|++++|.+++++ +..+++|+.|++++|++++++ +..+++
T Consensus 162 ~~~~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~ip---~~~l~~ 234 (457)
T 3bz5_A 162 TKLDVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID---VTPLTQ 234 (457)
T ss_dssp CCCCCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTT
T ss_pred cccccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCcccccC---ccccCC
Confidence 2444555666666666665554 111566677777777766652 667778888888888888765 667778
Q ss_pred ccEEEeCCCCCCCCCCchhhhh
Q psy14766 176 IRRPTITGQWKPRQNEDSDAQL 197 (207)
Q Consensus 176 L~~l~l~~n~l~~~~~~~~~~l 197 (207)
|+.|++++|.+++.....+..+
T Consensus 235 L~~L~l~~N~l~~~~~~~l~~L 256 (457)
T 3bz5_A 235 LTYFDCSVNPLTELDVSTLSKL 256 (457)
T ss_dssp CSEEECCSSCCSCCCCTTCTTC
T ss_pred CCEEEeeCCcCCCcCHHHCCCC
Confidence 8888888888887655444433
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=2.2e-16 Score=136.57 Aligned_cols=137 Identities=17% Similarity=0.184 Sum_probs=110.8
Q ss_pred CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc-ccccceee
Q psy14766 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSIN 132 (207)
Q Consensus 54 ~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~-~~~L~~L~ 132 (207)
..++.|++++|.+..++...+ .+++|+.|++++|.++.+ |..|.++++|+.|+|++|.++.+|.... +++|+.|+
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~---~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIF---KYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGG---GCCSCSCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred CCCcEEECCCCCCCCCChhhc---CCCCCCEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 589999999999999998887 589999999999999977 5689999999999999999999988766 89999999
Q ss_pred ccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCC-CccEEEeCCCCCCCCCCchhh
Q psy14766 133 LAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSD-QIRRPTITGQWKPRQNEDSDA 195 (207)
Q Consensus 133 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~l~l~~n~l~~~~~~~~~ 195 (207)
+++|.++.++.. ++.+++|++|+|++|.+++.++..+..+. ....+++++|.+++..|..+.
T Consensus 300 L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~ 362 (727)
T 4b8c_D 300 FFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERR 362 (727)
T ss_dssp CCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred CCCCCCCccChh-hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccc
Confidence 999999988765 99999999999999999977655443321 112244555555555444433
No 122
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.58 E-value=4.8e-14 Score=119.80 Aligned_cols=87 Identities=14% Similarity=0.202 Sum_probs=46.1
Q ss_pred CCCCEEEcCCCCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCC
Q psy14766 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITG 183 (207)
Q Consensus 104 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~ 183 (207)
++|+.|++++|.++.+|. .+++|+.|++++|.++.++. .+++|+.|++++|.++.+|. .+.++++|+.|++++
T Consensus 221 ~~L~~L~Ls~N~L~~lp~--~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~-~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLPV--LPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPE-SLIHLSSETTVNLEG 293 (622)
T ss_dssp TTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCG-GGGGSCTTCEEECCS
T ss_pred CCCCEEEccCCccCcCCC--CCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCH-HHhhccccCEEEecC
Confidence 344455555554444441 13455555555555555443 34556666666666665543 355566666666666
Q ss_pred CCCCCCCCchhhhh
Q psy14766 184 QWKPRQNEDSDAQL 197 (207)
Q Consensus 184 n~l~~~~~~~~~~l 197 (207)
|++++..+..+..+
T Consensus 294 N~l~~~~~~~l~~L 307 (622)
T 3g06_A 294 NPLSERTLQALREI 307 (622)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CCCCCcCHHHHHhc
Confidence 66665554444443
No 123
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.58 E-value=3.6e-14 Score=116.53 Aligned_cols=123 Identities=19% Similarity=0.272 Sum_probs=73.4
Q ss_pred eeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhc--------------C-CCcceEEEecCCcceeeCchhh
Q psy14766 36 RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM--------------G-ITNIQKLYLRKCKLEFVDDRAF 100 (207)
Q Consensus 36 ~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~--------------~-~~~L~~L~l~~n~l~~~~~~~f 100 (207)
+.+++++++++.+|. .+++++.|++++|.+++++... ..+ . .++|++|++++|+++.++ .|
T Consensus 74 ~~L~l~~~~l~~lp~-~~~~L~~L~l~~n~l~~lp~~~-~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp--~~ 149 (454)
T 1jl5_A 74 HELELNNLGLSSLPE-LPPHLESLVASCNSLTELPELP-QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP--EL 149 (454)
T ss_dssp SEEECTTSCCSCCCS-CCTTCSEEECCSSCCSSCCCCC-TTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC--CC
T ss_pred CEEEecCCccccCCC-CcCCCCEEEccCCcCCcccccc-CCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc--cc
Confidence 556666666666665 3455666666666665544211 000 0 146677777777777653 47
Q ss_pred cCCCCCCEEEcCCCCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeec
Q psy14766 101 RGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166 (207)
Q Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 166 (207)
+++++|+.|++++|.++.+|.. ..+|+.|++++|.+.+++ .++.+++|++|++++|.+++++
T Consensus 150 ~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~ 211 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLP 211 (454)
T ss_dssp TTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCC
T ss_pred CCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCC
Confidence 7777777777777777666543 346667777777666654 2556666666666666555543
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=9.1e-15 Score=115.20 Aligned_cols=147 Identities=16% Similarity=0.236 Sum_probs=109.7
Q ss_pred CCceEEEeecCCcc--------------------ccchhhhhhcC--------CCcceEEEecCCcceeeCchhhcCCCC
Q psy14766 54 LDTQVLDLSSNNIN--------------------VLQKEIFLQMG--------ITNIQKLYLRKCKLEFVDDRAFRGVTN 105 (207)
Q Consensus 54 ~~l~~L~ls~n~i~--------------------~~~~~~~~~~~--------~~~L~~L~l~~n~l~~~~~~~f~~l~~ 105 (207)
++++.|++++|.+. .++..+|. + +++|+++++.. .++.+.+.+|.++++
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~--~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFS--NVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDN 125 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTE--EEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTT
T ss_pred ccCeEEecCcceeEEecCccccccccccccccccccCHHHhc--ccccccccccCCCcEEECCc-cccchhHHHhhcCcc
Confidence 35666777776666 45556665 5 77778888777 777777777888888
Q ss_pred CCEEEcCCCCCCCcCCccc-------------------------------------------------------------
Q psy14766 106 MDELDLSDNLLSTVPSLIY------------------------------------------------------------- 124 (207)
Q Consensus 106 L~~L~l~~n~l~~~~~~~~------------------------------------------------------------- 124 (207)
|+.+++++|.+..++..+|
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 8888877776533332221
Q ss_pred -------------------ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCcc-EEEeCCC
Q psy14766 125 -------------------IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIR-RPTITGQ 184 (207)
Q Consensus 125 -------------------~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~-~l~l~~n 184 (207)
+++|+.+++.+|+++.+++.+|.++.+|+.+++.+| ++.+++.+|.++.+|+ .+++.+
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 347888888888899898888999999999999887 8888888899999998 999988
Q ss_pred CCCCCCCchhhhhcccccCcC
Q psy14766 185 WKPRQNEDSDAQLAKGRAHDF 205 (207)
Q Consensus 185 ~l~~~~~~~~~~l~~~~~~~~ 205 (207)
.++...+..|....+++.+.+
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEE
T ss_pred cceEEchhhhhCCccCCEEEe
Confidence 677777778877776666554
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=6.1e-15 Score=124.19 Aligned_cols=135 Identities=14% Similarity=0.267 Sum_probs=108.0
Q ss_pred CceEEE-eecCCccccchhhh-----hhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc-ccc
Q psy14766 55 DTQVLD-LSSNNINVLQKEIF-----LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPY 127 (207)
Q Consensus 55 ~l~~L~-ls~n~i~~~~~~~~-----~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~-~~~ 127 (207)
+++.|+ ++.|.+..++...+ .......|+.|++++|.++.++ . |+.+++|+.|++++|.++.+|.... +++
T Consensus 410 ~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 487 (567)
T 1dce_A 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLRALPPALAALRC 487 (567)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCCCCCGGGGGCTT
T ss_pred hcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCc-C-ccccccCcEeecCcccccccchhhhcCCC
Confidence 466666 56665554433211 1001246889999999999985 3 9999999999999999999988655 899
Q ss_pred cceeeccCCccccccccccCCCCCccEEecCCCceeeec-cccCCCCCCccEEEeCCCCCCCCCCch
Q psy14766 128 LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY-SEAFYGSDQIRRPTITGQWKPRQNEDS 193 (207)
Q Consensus 128 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~l~l~~n~l~~~~~~~ 193 (207)
|+.|++++|.+++++ .++.+++|++|+|++|++++++ +..+.++++|+.|++++|++++.++..
T Consensus 488 L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 488 LEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp CCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 999999999999976 5889999999999999999996 677889999999999999999876543
No 126
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=1.3e-15 Score=119.99 Aligned_cols=166 Identities=15% Similarity=0.104 Sum_probs=96.1
Q ss_pred CeeEEecCCCCcccCCCCC--CCceEEEeecCCcccc-chhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEc
Q psy14766 35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVL-QKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~--~~l~~L~ls~n~i~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l 111 (207)
.+.+++.+..+...+.... ++++.|++++|.++.. .+..+. .+++|++|++++|.++...+..++.+++|+.|++
T Consensus 72 l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 72 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS--QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT--TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHh--hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 4455666665555554443 4788888888887643 344444 6788888888888777665667777788888888
Q ss_pred CCC-CCCC--cCCccc-ccccceeeccCC-ccccc-cccccCCCC-CccEEecCCCc--ee--eeccccCCCCCCccEEE
Q psy14766 112 SDN-LLST--VPSLIY-IPYLKSINLAHN-PIHQI-SSYSFQSTP-GIRYIDMSNCQ--IH--TIYSEAFYGSDQIRRPT 180 (207)
Q Consensus 112 ~~n-~l~~--~~~~~~-~~~L~~L~l~~n-~i~~~-~~~~~~~l~-~L~~L~L~~n~--i~--~~~~~~~~~l~~L~~l~ 180 (207)
++| .++. ++.... +++|+.|++++| .++.. .+..+..++ +|++|++++|. ++ .++ ..+.++++|+.|+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~ 228 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS-TLVRRCPNLVHLD 228 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH-HHHHHCTTCSEEE
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH-HHHhhCCCCCEEe
Confidence 877 4552 333222 666777777777 66542 122344455 66666666652 32 122 2334455555555
Q ss_pred eCCCC-CCCCCCchhhhhcccccC
Q psy14766 181 ITGQW-KPRQNEDSDAQLAKGRAH 203 (207)
Q Consensus 181 l~~n~-l~~~~~~~~~~l~~~~~~ 203 (207)
+++|. ++...+..+..+++++.+
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L 252 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHL 252 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEe
Confidence 55555 443333344444444443
No 127
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.55 E-value=1.3e-13 Score=113.21 Aligned_cols=138 Identities=12% Similarity=0.197 Sum_probs=81.2
Q ss_pred eeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCC
Q psy14766 36 RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115 (207)
Q Consensus 36 ~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~ 115 (207)
+.++++++.+..+|. .++++++|++++|.+++++ .+. ++++|++|++++|+++.++. . ..+|+.|++++|.
T Consensus 114 ~~L~l~~n~l~~l~~-~~~~L~~L~L~~n~l~~lp--~~~--~l~~L~~L~l~~N~l~~lp~-~---~~~L~~L~L~~n~ 184 (454)
T 1jl5_A 114 KSLLVDNNNLKALSD-LPPLLEYLGVSNNQLEKLP--ELQ--NSSFLKIIDVDNNSLKKLPD-L---PPSLEFIAAGNNQ 184 (454)
T ss_dssp CEEECCSSCCSCCCS-CCTTCCEEECCSSCCSSCC--CCT--TCTTCCEEECCSSCCSCCCC-C---CTTCCEEECCSSC
T ss_pred cEEECCCCccCcccC-CCCCCCEEECcCCCCCCCc--ccC--CCCCCCEEECCCCcCcccCC-C---cccccEEECcCCc
Confidence 344444444444443 2357788888888887766 255 67888888888888877643 2 2467777777777
Q ss_pred CCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCC
Q psy14766 116 LSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPR 188 (207)
Q Consensus 116 l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~ 188 (207)
++.+|....+++|+.|++++|.+++++.. .++|++|++++|.++.++. +..+++|+.|++++|.+++
T Consensus 185 l~~l~~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 185 LEELPELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CSSCCCCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSS
T ss_pred CCcCccccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCc
Confidence 76665322266666666666666554331 1345555555555554441 4455555555555555544
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=1.4e-17 Score=122.17 Aligned_cols=106 Identities=16% Similarity=0.225 Sum_probs=51.3
Q ss_pred CceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCcccccccceeecc
Q psy14766 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLA 134 (207)
Q Consensus 55 ~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~ 134 (207)
+++.|++++|.++.++ .+. .+++|+.|++++|.++.++ ..+..+++|+.|++++|.++.++....+++|+.|+++
T Consensus 49 ~L~~L~ls~n~l~~l~--~~~--~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 49 ACKHLALSTNNIEKIS--SLS--GMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMS 123 (198)
T ss_dssp TCSEEECSEEEESCCC--CHH--HHTTCCEEEEEEEEECSCS-SHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEES
T ss_pred CCCEEECCCCCCcccc--ccc--cCCCCCEEECCCCCccccc-chhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECC
Confidence 4555555555555544 222 3455555555555555442 2444444555555555555544421114555555555
Q ss_pred CCccccccc-cccCCCCCccEEecCCCceeee
Q psy14766 135 HNPIHQISS-YSFQSTPGIRYIDMSNCQIHTI 165 (207)
Q Consensus 135 ~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~ 165 (207)
+|.+..++. ..+..+++|++|++++|.+.+.
T Consensus 124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 555554432 2344555555555555555433
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=2.1e-14 Score=120.89 Aligned_cols=98 Identities=8% Similarity=0.144 Sum_probs=71.3
Q ss_pred CCCEEEcCCCCCCCcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCC
Q psy14766 105 NMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQ 184 (207)
Q Consensus 105 ~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n 184 (207)
.|+.|++++|.++.+|....+++|+.|++++|.++.++. .++.+++|+.|+|++|.++++| .+.++++|+.|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCC
Confidence 477788888887777762227778888888888776644 5777788888888888887765 4777778888888888
Q ss_pred CCCCCC-CchhhhhcccccCcC
Q psy14766 185 WKPRQN-EDSDAQLAKGRAHDF 205 (207)
Q Consensus 185 ~l~~~~-~~~~~~l~~~~~~~~ 205 (207)
.+++.. |..+..+++++.+.+
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEe
Confidence 887775 777777776666544
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=8.9e-15 Score=116.71 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=100.3
Q ss_pred CeeEEecCCCCcccCC--------CCCCCceEEEeecCCccccchhhhhhcCC-----CcceEEEecCCcceeeCchh--
Q psy14766 35 KRTVECIDRNFYTIPE--------GIDLDTQVLDLSSNNINVLQKEIFLQMGI-----TNIQKLYLRKCKLEFVDDRA-- 99 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~--------~~~~~l~~L~ls~n~i~~~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~-- 99 (207)
.+.++.+++.+...+. ..+.+++.|++++|.++......+. .+ ++|++|++++|.++...+..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~--~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV--QILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHH--HHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHH--HHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 4567777777776663 1122678888888888776665554 32 67888888888877666543
Q ss_pred --hcCC-CCCCEEEcCCCCCCCcCCccc-------ccccceeeccCCcccccccc----ccCCCC-CccEEecCCCceee
Q psy14766 100 --FRGV-TNMDELDLSDNLLSTVPSLIY-------IPYLKSINLAHNPIHQISSY----SFQSTP-GIRYIDMSNCQIHT 164 (207)
Q Consensus 100 --f~~l-~~L~~L~l~~n~l~~~~~~~~-------~~~L~~L~l~~n~i~~~~~~----~~~~l~-~L~~L~L~~n~i~~ 164 (207)
+..+ ++|+.|++++|.++..+...+ ..+|+.|++++|.+...... .+...+ +|++|++++|++++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 3344 678888888888776554332 14788888888877754332 233444 78888888888876
Q ss_pred eccc----cCCCC-CCccEEEeCCCCCCCC
Q psy14766 165 IYSE----AFYGS-DQIRRPTITGQWKPRQ 189 (207)
Q Consensus 165 ~~~~----~~~~l-~~L~~l~l~~n~l~~~ 189 (207)
.... .+... ++|+.|++++|.++..
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~ 211 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLK 211 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence 6542 23344 4788888888887753
No 131
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.49 E-value=8.7e-14 Score=110.20 Aligned_cols=103 Identities=21% Similarity=0.389 Sum_probs=82.6
Q ss_pred EEEeecC-CccccchhhhhhcCCCcceEEEecC-CcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc--ccccceeec
Q psy14766 58 VLDLSSN-NINVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL 133 (207)
Q Consensus 58 ~L~ls~n-~i~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l 133 (207)
.++.+++ .++.+|. +. .+.+|+.|++++ |.++.+++..|.++++|+.|+|++|+++.+++..+ +++|+.|+|
T Consensus 12 ~v~~~~~n~l~~ip~--l~--~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LP--GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCCTTTTT--SC--SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred EEEcCCCCCCCccCC--CC--CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 3577887 8888887 55 678899999986 88988888888888888888888888887777665 788888888
Q ss_pred cCCccccccccccCCCCCccEEecCCCceeee
Q psy14766 134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165 (207)
Q Consensus 134 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~ 165 (207)
++|+++.+++..+..+. |+.|+|++|.+...
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 88888888777666655 88888888887653
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=1.3e-16 Score=116.96 Aligned_cols=131 Identities=18% Similarity=0.268 Sum_probs=109.4
Q ss_pred CceEEEeecC--CccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc-cccccee
Q psy14766 55 DTQVLDLSSN--NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSI 131 (207)
Q Consensus 55 ~l~~L~ls~n--~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~-~~~L~~L 131 (207)
+++...+.+. .++.++. .+. .+++|++|++++|.++.++ .+.++++|+.|++++|.++.+|.... +++|+.|
T Consensus 24 ~l~~~~l~~~~~~l~~l~~-~~~--~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L 98 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDA-TLS--TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEEL 98 (198)
T ss_dssp TCSEEECCBCCTTCCCCHH-HHH--HTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEE
T ss_pred chheeEeccccCcHhhhhH-HHh--cCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEE
Confidence 4555666554 4555555 455 6899999999999999974 89999999999999999998887555 7899999
Q ss_pred eccCCccccccccccCCCCCccEEecCCCceeeecc-ccCCCCCCccEEEeCCCCCCCCCCc
Q psy14766 132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS-EAFYGSDQIRRPTITGQWKPRQNED 192 (207)
Q Consensus 132 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~l~l~~n~l~~~~~~ 192 (207)
++++|.++.++ .+..+++|++|++++|.++.++. ..+..+++|+.+++++|++.+..+.
T Consensus 99 ~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 99 WISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp EEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred ECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 99999999875 37788999999999999998775 5688999999999999999765443
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=2e-14 Score=114.63 Aligned_cols=159 Identities=14% Similarity=0.137 Sum_probs=108.7
Q ss_pred CeeEEecCCCCcccCCC-C-------CCCceEEEeecCCccccchhhhhhc--CC-CcceEEEecCCcceeeCchhhc--
Q psy14766 35 KRTVECIDRNFYTIPEG-I-------DLDTQVLDLSSNNINVLQKEIFLQM--GI-TNIQKLYLRKCKLEFVDDRAFR-- 101 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~-~-------~~~l~~L~ls~n~i~~~~~~~~~~~--~~-~~L~~L~l~~n~l~~~~~~~f~-- 101 (207)
.+.++.+++.+...... + .++++.|++++|.++......+... .. ++|++|++++|.++......+.
T Consensus 53 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 132 (362)
T 3goz_A 53 VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA 132 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred eeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH
Confidence 56788888877765321 1 2578899999998887766644310 23 6889999999988887765443
Q ss_pred --C-CCCCCEEEcCCCCCCCcCCccc------c-cccceeeccCCcccccccc----ccCCC-CCccEEecCCCceee--
Q psy14766 102 --G-VTNMDELDLSDNLLSTVPSLIY------I-PYLKSINLAHNPIHQISSY----SFQST-PGIRYIDMSNCQIHT-- 164 (207)
Q Consensus 102 --~-l~~L~~L~l~~n~l~~~~~~~~------~-~~L~~L~l~~n~i~~~~~~----~~~~l-~~L~~L~L~~n~i~~-- 164 (207)
. .++|+.|++++|.++....... . ++|+.|++++|+++...+. .+... ++|++|++++|.+++
T Consensus 133 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~ 212 (362)
T 3goz_A 133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS 212 (362)
T ss_dssp HTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence 3 2588999999888774332211 2 3888999999988876653 23344 488999999998887
Q ss_pred ---eccccCCC-CCCccEEEeCCCCCCCCCCchh
Q psy14766 165 ---IYSEAFYG-SDQIRRPTITGQWKPRQNEDSD 194 (207)
Q Consensus 165 ---~~~~~~~~-l~~L~~l~l~~n~l~~~~~~~~ 194 (207)
++. .+.. .++|+.|++++|.++......+
T Consensus 213 ~~~l~~-~l~~~~~~L~~L~Ls~N~l~~~~~~~l 245 (362)
T 3goz_A 213 YAELAY-IFSSIPNHVVSLNLCLNCLHGPSLENL 245 (362)
T ss_dssp HHHHHH-HHHHSCTTCCEEECCSSCCCCCCHHHH
T ss_pred HHHHHH-HHhcCCCCceEEECcCCCCCcHHHHHH
Confidence 332 2333 4578899999998887655433
No 134
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.43 E-value=1.2e-14 Score=116.79 Aligned_cols=18 Identities=11% Similarity=0.257 Sum_probs=8.2
Q ss_pred hcCCCCCCEEEcCCCCCC
Q psy14766 100 FRGVTNMDELDLSDNLLS 117 (207)
Q Consensus 100 f~~l~~L~~L~l~~n~l~ 117 (207)
+..+++|+.|++++|+++
T Consensus 183 l~~~~~L~~L~L~~n~l~ 200 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIR 200 (386)
T ss_dssp HHHCTTCCEEECCSSCCC
T ss_pred HHhCCCcCEEECcCCCCC
Confidence 334444444444444443
No 135
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.41 E-value=8.3e-14 Score=109.64 Aligned_cols=169 Identities=12% Similarity=0.136 Sum_probs=107.3
Q ss_pred CeeEEecCCCCcc--cCCCC--CCCceEEEeecCCccccchhhhhhcCCCcceEEEecCC-cceee-CchhhcCCCCCCE
Q psy14766 35 KRTVECIDRNFYT--IPEGI--DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFV-DDRAFRGVTNMDE 108 (207)
Q Consensus 35 ~~~~~c~~~~l~~--~p~~~--~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~f~~l~~L~~ 108 (207)
.+.++.+++.+.. +|..+ .++++.|++++|.++...+..+. .+++|++|++++| .++.. .+..+.++++|+.
T Consensus 95 L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~--~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA--KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT--TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh--cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 5667777776653 34322 25788888888888766666666 6788888888888 56642 2445777888888
Q ss_pred EEcCCC-CCCC--cCCccc-cc-ccceeeccCCc--cc-cccccccCCCCCccEEecCCCc-eeeeccccCCCCCCccEE
Q psy14766 109 LDLSDN-LLST--VPSLIY-IP-YLKSINLAHNP--IH-QISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYGSDQIRRP 179 (207)
Q Consensus 109 L~l~~n-~l~~--~~~~~~-~~-~L~~L~l~~n~--i~-~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~l 179 (207)
|++++| .++. ++.... ++ +|+.|++++|. ++ ...+..+..+++|++|++++|. +++.....+..+++|+.|
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L 252 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 252 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEe
Confidence 888888 7663 333333 66 78888888873 43 1222345567778888888877 554444456677778888
Q ss_pred EeCCCC-CCCCCCchhhhhcccccCcC
Q psy14766 180 TITGQW-KPRQNEDSDAQLAKGRAHDF 205 (207)
Q Consensus 180 ~l~~n~-l~~~~~~~~~~l~~~~~~~~ 205 (207)
++++|. +....-..+..+++++.+.+
T Consensus 253 ~l~~~~~~~~~~~~~l~~~~~L~~L~l 279 (336)
T 2ast_B 253 SLSRCYDIIPETLLELGEIPTLKTLQV 279 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred eCCCCCCCCHHHHHHHhcCCCCCEEec
Confidence 887774 22111113444555554443
No 136
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.39 E-value=7.3e-14 Score=112.22 Aligned_cols=134 Identities=12% Similarity=0.167 Sum_probs=88.0
Q ss_pred CCceEEEeecCCcccc----chhhhhhcCCCcceEEEecCCcceeeCchhhcC----C---------CCCCEEEcCCCCC
Q psy14766 54 LDTQVLDLSSNNINVL----QKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG----V---------TNMDELDLSDNLL 116 (207)
Q Consensus 54 ~~l~~L~ls~n~i~~~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~----l---------~~L~~L~l~~n~l 116 (207)
++++.|++++|.++.. .+..+. .+++|+.|++++|.++...+..+.. + ++|+.|++++|++
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLS--KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHH--HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHH--hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 5778888888888762 333444 5778888888888876544333333 3 7888888888887
Q ss_pred C--CcCCc--cc--ccccceeeccCCcccc-----ccccccCCCCCccEEecCCCcee----eeccccCCCCCCccEEEe
Q psy14766 117 S--TVPSL--IY--IPYLKSINLAHNPIHQ-----ISSYSFQSTPGIRYIDMSNCQIH----TIYSEAFYGSDQIRRPTI 181 (207)
Q Consensus 117 ~--~~~~~--~~--~~~L~~L~l~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~l~l 181 (207)
+ .++.. .+ +++|+.|++++|++.. +.+..+..+++|++|++++|.++ ...+..+..+++|+.|++
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 6 23321 11 6678888888887763 22224667778888888888774 222235666777777777
Q ss_pred CCCCCCCC
Q psy14766 182 TGQWKPRQ 189 (207)
Q Consensus 182 ~~n~l~~~ 189 (207)
++|.++..
T Consensus 252 ~~n~i~~~ 259 (386)
T 2ca6_A 252 NDCLLSAR 259 (386)
T ss_dssp TTCCCCHH
T ss_pred CCCCCchh
Confidence 77777643
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.33 E-value=1.6e-11 Score=99.29 Aligned_cols=103 Identities=14% Similarity=0.202 Sum_probs=54.8
Q ss_pred ceeeCchhhcCCCCCCEEEcCCCCCC-----CcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceee
Q psy14766 92 LEFVDDRAFRGVTNMDELDLSDNLLS-----TVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT 164 (207)
Q Consensus 92 l~~~~~~~f~~l~~L~~L~l~~n~l~-----~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 164 (207)
++.+...+|.++++|+.+++.++.+. .++..+| +.+|+.+.+. +.+..+...+|.++.+|+.+.+.++ ++.
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 34444445555555555555444333 3444444 4555555554 3355555555666666666666433 555
Q ss_pred eccccCCCCCCccEEEeCCCCCCCCCCchhhhh
Q psy14766 165 IYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQL 197 (207)
Q Consensus 165 ~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l 197 (207)
+...+|.++ +|+.+.+.+|......+..|..+
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred EcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 655666666 66666666665555444444433
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.29 E-value=3e-11 Score=97.64 Aligned_cols=137 Identities=17% Similarity=0.303 Sum_probs=70.6
Q ss_pred CceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCC--------------------
Q psy14766 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN-------------------- 114 (207)
Q Consensus 55 ~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n-------------------- 114 (207)
+++.+++++|.++.++...|. ..+|+.+.+.. .++.+...+|.++++|+.+++..+
T Consensus 181 ~L~~l~l~~n~l~~I~~~aF~---~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp 256 (401)
T 4fdw_A 181 NLKKADLSKTKITKLPASTFV---YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLP 256 (401)
T ss_dssp TCCEEECTTSCCSEECTTTTT---TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred cCCeeecCCCcceEechhhEe---ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeC
Confidence 456666666655555555553 34555555542 255555566666666666666542
Q ss_pred -CCCCcCCccc--ccccceeeccCCccc-----cccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCC
Q psy14766 115 -LLSTVPSLIY--IPYLKSINLAHNPIH-----QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWK 186 (207)
Q Consensus 115 -~l~~~~~~~~--~~~L~~L~l~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l 186 (207)
.++.++..+| +.+|+.+++.+|.+. .++...|.+|++|+.+++. +.++.+...+|.++.+|+.+.+..| +
T Consensus 257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 257 NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-V 334 (401)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-c
Confidence 2333334344 445555555444433 3444455555555555555 2355555555555555666655433 3
Q ss_pred CCCCCchhhhh
Q psy14766 187 PRQNEDSDAQL 197 (207)
Q Consensus 187 ~~~~~~~~~~l 197 (207)
+......|...
T Consensus 335 ~~I~~~aF~~~ 345 (401)
T 4fdw_A 335 TQINFSAFNNT 345 (401)
T ss_dssp CEECTTSSSSS
T ss_pred cEEcHHhCCCC
Confidence 33344444443
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.28 E-value=6.2e-13 Score=108.90 Aligned_cols=151 Identities=13% Similarity=0.199 Sum_probs=83.8
Q ss_pred eeEEecCCCCcccCCC--C--CCCceEEEeecCCccccc----hhhhhhcCCCcceEEEecCCcceeeCchhh-cCCC--
Q psy14766 36 RTVECIDRNFYTIPEG--I--DLDTQVLDLSSNNINVLQ----KEIFLQMGITNIQKLYLRKCKLEFVDDRAF-RGVT-- 104 (207)
Q Consensus 36 ~~~~c~~~~l~~~p~~--~--~~~l~~L~ls~n~i~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f-~~l~-- 104 (207)
+.++.++..+...+.. + .++++.|++++|.++... +..+. .+++|++|++++|.++......+ ..+.
T Consensus 6 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 6 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALR--VNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHH--TCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred eehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHH--hCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 3455555555443311 1 146777777777766432 22333 45677777777777665433222 2343
Q ss_pred --CCCEEEcCCCCCCCc-----CCccc-ccccceeeccCCccccccccc-----cCCCCCccEEecCCCceeeec----c
Q psy14766 105 --NMDELDLSDNLLSTV-----PSLIY-IPYLKSINLAHNPIHQISSYS-----FQSTPGIRYIDMSNCQIHTIY----S 167 (207)
Q Consensus 105 --~L~~L~l~~n~l~~~-----~~~~~-~~~L~~L~l~~n~i~~~~~~~-----~~~l~~L~~L~L~~n~i~~~~----~ 167 (207)
+|++|++++|.++.. +.... +++|+.|++++|.+....... ....++|++|++++|.++... +
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 577777777766532 22222 567777777777765433221 222456777777777766532 2
Q ss_pred ccCCCCCCccEEEeCCCCCCC
Q psy14766 168 EAFYGSDQIRRPTITGQWKPR 188 (207)
Q Consensus 168 ~~~~~l~~L~~l~l~~n~l~~ 188 (207)
..+..+++|+.|++++|.+..
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHH
T ss_pred HHHhhCCCCCEEECcCCCcch
Confidence 334456677777777777654
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.26 E-value=1.6e-13 Score=112.34 Aligned_cols=62 Identities=21% Similarity=0.360 Sum_probs=30.0
Q ss_pred CCceEEEeecCCccccch-----hhhhhcCCCcceEEEecCCcceeeC----chhhcCCCCCCEEEcCCCCCC
Q psy14766 54 LDTQVLDLSSNNINVLQK-----EIFLQMGITNIQKLYLRKCKLEFVD----DRAFRGVTNMDELDLSDNLLS 117 (207)
Q Consensus 54 ~~l~~L~ls~n~i~~~~~-----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~f~~l~~L~~L~l~~n~l~ 117 (207)
++++.|++++|.++.... ..+. .+++|++|++++|.++... +..+..+++|+.|++++|.++
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLH--PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTS--TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhc--CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 355556666555543221 1111 2455556666555555421 234444555555555555543
No 141
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=99.21 E-value=3.6e-11 Score=81.98 Aligned_cols=65 Identities=26% Similarity=0.521 Sum_probs=57.1
Q ss_pred CCCCCCEeeecCCCeeEEecCCCCc--ccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcc
Q psy14766 22 SCPLGCSCKWKAGKRTVECIDRNFY--TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL 92 (207)
Q Consensus 22 ~cp~~c~c~~~~~~~~~~c~~~~l~--~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l 92 (207)
+||..|.|. ...++|++++++ .+|..++.+++.|++++|.|+.++...|. .+++|+.|++++|.+
T Consensus 1 ~CP~~C~C~----~~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 1 PCPAPCSCA----GTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLD--ALPALRTAHLGANPW 67 (130)
T ss_dssp CCCTTCEEE----TTEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGG--GCTTCCEEECCSSCC
T ss_pred CcCCCCEEc----CCEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhh--hccccCEEEecCCCe
Confidence 599999998 579999999999 99999999999999999999999888887 677888888877755
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=2.8e-12 Score=102.71 Aligned_cols=159 Identities=10% Similarity=0.037 Sum_probs=98.8
Q ss_pred CeeEEecCCCCcccCC-----C---CCCCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhh-----c
Q psy14766 35 KRTVECIDRNFYTIPE-----G---IDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF-----R 101 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~-----~---~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f-----~ 101 (207)
.+.++.+++.+..... . ....++.|++++|.++......+.. .+.+|+.|++++|.++......+ .
T Consensus 74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP-VFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH-HHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred CCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH-HHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 3456666665543211 1 1246778888888776433332221 34678888888887766544444 2
Q ss_pred CCCCCCEEEcCCCCCCCcCCcc-----c-ccccceeeccCCcccccc----ccccCCCCCccEEecCCCceeeecc----
Q psy14766 102 GVTNMDELDLSDNLLSTVPSLI-----Y-IPYLKSINLAHNPIHQIS----SYSFQSTPGIRYIDMSNCQIHTIYS---- 167 (207)
Q Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~-----~-~~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~---- 167 (207)
..++|+.|++++|.++...... . .++|++|++++|.+.... ...+...++|+.|+|++|.|++...
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 4567888888888876422211 1 567888888888877643 2345566788888888888875432
Q ss_pred ccCCCCCCccEEEeCCCCCCCCCCchh
Q psy14766 168 EAFYGSDQIRRPTITGQWKPRQNEDSD 194 (207)
Q Consensus 168 ~~~~~l~~L~~l~l~~n~l~~~~~~~~ 194 (207)
.++...++|+.|++++|.++......+
T Consensus 233 ~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 234455778888888888875433333
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.11 E-value=2.6e-12 Score=102.91 Aligned_cols=136 Identities=11% Similarity=0.152 Sum_probs=102.0
Q ss_pred CCceEEEeecCCccccchhhhhhc---CCCcceEEEecCCcceeeCchhh-cCCCCCCEEEcCCCCCCCcCCccc-----
Q psy14766 54 LDTQVLDLSSNNINVLQKEIFLQM---GITNIQKLYLRKCKLEFVDDRAF-RGVTNMDELDLSDNLLSTVPSLIY----- 124 (207)
Q Consensus 54 ~~l~~L~ls~n~i~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~f-~~l~~L~~L~l~~n~l~~~~~~~~----- 124 (207)
+.++.|++++|.++......+... ...+|++|++++|.++......+ ..+.+|+.|++++|.++.......
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 478999999999987665554421 23689999999999875433332 345689999999999875433222
Q ss_pred --ccccceeeccCCcccccccc----ccCCCCCccEEecCCCceeeec----cccCCCCCCccEEEeCCCCCCCC
Q psy14766 125 --IPYLKSINLAHNPIHQISSY----SFQSTPGIRYIDMSNCQIHTIY----SEAFYGSDQIRRPTITGQWKPRQ 189 (207)
Q Consensus 125 --~~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~l~l~~n~l~~~ 189 (207)
.+.|+.|++++|.++..... .+...++|++|+|++|.|++.. ...+...++|+.|++++|.++..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 36799999999998764332 3467889999999999998643 34566778999999999999853
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.72 E-value=3e-09 Score=89.61 Aligned_cols=134 Identities=12% Similarity=0.106 Sum_probs=74.3
Q ss_pred CceEEEeecCCccccchhhhhhcCCCcceEEEec----CCcceeeC-----chhhcCCCCCCEEEcCCCC--CCCc-CCc
Q psy14766 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLR----KCKLEFVD-----DRAFRGVTNMDELDLSDNL--LSTV-PSL 122 (207)
Q Consensus 55 ~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~----~n~l~~~~-----~~~f~~l~~L~~L~l~~n~--l~~~-~~~ 122 (207)
+++.|+++.+.++......+.. .+++|+.|+++ .|.++..+ +..+.++++|+.|+++++. ++.. ...
T Consensus 379 ~L~~L~l~~~~l~~~~~~~l~~-~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 379 ELEYMAVYVSDITNESLESIGT-YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TCSEEEEEESCCCHHHHHHHHH-HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred cCeEEEeecCCccHHHHHHHHh-hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 4444444444444322222220 24555555553 34444321 1224445666666664322 2211 111
Q ss_pred c-c-ccccceeeccCCcccccc-ccccCCCCCccEEecCCCceeeec-cccCCCCCCccEEEeCCCCCCCC
Q psy14766 123 I-Y-IPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIY-SEAFYGSDQIRRPTITGQWKPRQ 189 (207)
Q Consensus 123 ~-~-~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~l~l~~n~l~~~ 189 (207)
. . +++|+.|++++|+++... +..+..+++|+.|++++|.+++.. +.....+++|+.|++++|+++..
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 1 1 567888888888876532 234567888999999998876432 23345678899999999988754
No 145
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.71 E-value=1.1e-07 Score=75.89 Aligned_cols=133 Identities=14% Similarity=0.252 Sum_probs=97.7
Q ss_pred CceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc--ccccceee
Q psy14766 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSIN 132 (207)
Q Consensus 55 ~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~ 132 (207)
.++.+.+.. .+..+...+|. ++.+|+.+.+..+ ++.+...+|.+..+|+.+.+.. .+..++..+| +.+|+.+.
T Consensus 218 ~l~~i~~~~-~~~~i~~~~f~--~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 218 NLKKITITS-GVTTLGDGAFY--GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp SCSEEECCT-TCCEECTTTTT--TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEE
T ss_pred ccceeeecc-ceeEEcccccc--CCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccccccc
Confidence 455555543 35556666666 6778888888765 7778788888888888888854 4667777777 78888888
Q ss_pred ccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCchh
Q psy14766 133 LAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSD 194 (207)
Q Consensus 133 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~ 194 (207)
+..+.+..+...+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+.+..+ ++......|
T Consensus 293 l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF 352 (379)
T 4h09_A 293 MDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAF 352 (379)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred ccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHh
Confidence 8888888888888888888888888654 78888888888888888887654 443334444
No 146
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.68 E-value=4.8e-09 Score=88.34 Aligned_cols=101 Identities=13% Similarity=0.116 Sum_probs=56.1
Q ss_pred CceEEEeecCC-cccc-chhhhhhcCCCcceEEEecCCcceeeCc----hhhcCCCCCCEEEcCCCCCCCcCCcc-----
Q psy14766 55 DTQVLDLSSNN-INVL-QKEIFLQMGITNIQKLYLRKCKLEFVDD----RAFRGVTNMDELDLSDNLLSTVPSLI----- 123 (207)
Q Consensus 55 ~l~~L~ls~n~-i~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~f~~l~~L~~L~l~~n~l~~~~~~~----- 123 (207)
+++.|+++++. ++.. ...... .+++|++|++++|.++.... ..+..+++|+.|++++|.++.+....
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~ 216 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVT--HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA 216 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHH--HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHh--hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH
Confidence 47888887775 2211 111112 46778888888777655422 23455677777777777765332211
Q ss_pred c-ccccceeeccCCccccccccccCCCCCccEEecC
Q psy14766 124 Y-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMS 158 (207)
Q Consensus 124 ~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 158 (207)
. +++|+.|++++|.+.+++ ..+..+++|+.++++
T Consensus 217 ~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGG 251 (592)
T ss_dssp HHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEEC
T ss_pred hhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhccc
Confidence 1 567777777777665543 223334444444443
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.56 E-value=4.9e-07 Score=72.65 Aligned_cols=114 Identities=16% Similarity=0.315 Sum_probs=87.2
Q ss_pred ccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccc
Q psy14766 66 INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISS 143 (207)
Q Consensus 66 i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~ 143 (207)
++.+...+|. ++.+|+.+.+..+ +..+...+|.++.+|+.+.+. +.++.++..+| +.+|+.+.+..+ ++.+..
T Consensus 253 v~~i~~~aF~--~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~ 327 (394)
T 4gt6_A 253 VARIETHAFD--SCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILD 327 (394)
T ss_dssp EEEECTTTTT--TCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred ceEcccceee--ecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehH
Confidence 4445556666 6778888888654 456777788888888888885 55777888877 678888888654 777888
Q ss_pred cccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCC
Q psy14766 144 YSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQW 185 (207)
Q Consensus 144 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~ 185 (207)
.+|.+|.+|+.+.+..+ ++.+...+|.++.+|+.+.+.++.
T Consensus 328 ~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred hHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 88888888888888644 778888888888888888888764
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.54 E-value=1.1e-06 Score=70.18 Aligned_cols=124 Identities=15% Similarity=0.233 Sum_probs=102.3
Q ss_pred CCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEE
Q psy14766 78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYI 155 (207)
Q Consensus 78 ~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 155 (207)
...+++.+.+..+ +..+...+|.+...|+.+.+..+ ++.++..++ +..|+.+.+.. .+..++...|.++.+|+.+
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccc
Confidence 4567777777554 67777889999999999999765 777888777 78899999854 4788888899999999999
Q ss_pred ecCCCceeeeccccCCCCCCccEEEeCCCCCCCCCCchhhhhcccccCcC
Q psy14766 156 DMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNEDSDAQLAKGRAHDF 205 (207)
Q Consensus 156 ~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~~~~~~~ 205 (207)
.+.++.++.+...+|.++.+|+.+.+..+ ++......|....+++.+.+
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred cccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 99999999999999999999999999765 66666777777777776655
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.54 E-value=1.4e-08 Score=85.50 Aligned_cols=131 Identities=9% Similarity=0.065 Sum_probs=70.8
Q ss_pred CceEEEeecCCccccchhhhhhcCCCcceEEEec--C----CcceeeCc-----hhhcCCCCCCEEEcCCCCCCCcC--C
Q psy14766 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLR--K----CKLEFVDD-----RAFRGVTNMDELDLSDNLLSTVP--S 121 (207)
Q Consensus 55 ~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~--~----n~l~~~~~-----~~f~~l~~L~~L~l~~n~l~~~~--~ 121 (207)
+++.|.+..+.++......+.. .+++|+.|+++ + +.++..+. ..+..+++|+.|++++ .++... .
T Consensus 373 ~L~~L~~~~~~l~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~ 450 (594)
T 2p1m_B 373 KLESVLYFCRQMTNAALITIAR-NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY 450 (594)
T ss_dssp TCCEEEEEESCCCHHHHHHHHH-HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred hHHHHHHhcCCcCHHHHHHHHh-hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence 4555555555554333222221 25566666666 2 33432211 1244556667777655 333111 1
Q ss_pred ccc-ccccceeeccCCcccccccccc-CCCCCccEEecCCCceeeecc-ccCCCCCCccEEEeCCCCCC
Q psy14766 122 LIY-IPYLKSINLAHNPIHQISSYSF-QSTPGIRYIDMSNCQIHTIYS-EAFYGSDQIRRPTITGQWKP 187 (207)
Q Consensus 122 ~~~-~~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~l~l~~n~l~ 187 (207)
... +++|+.|++++|.++......+ ..+++|+.|++++|.+++... .....+++|+.|++++|+++
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 111 5667777777777655433333 457778888888887754332 23345677888888888764
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.51 E-value=1.8e-08 Score=72.74 Aligned_cols=110 Identities=10% Similarity=0.083 Sum_probs=76.9
Q ss_pred CCCcceEEEecCC-cceeeC----chhhcCCCCCCEEEcCCCCCCCcCCccc------ccccceeeccCCcccccc----
Q psy14766 78 GITNIQKLYLRKC-KLEFVD----DRAFRGVTNMDELDLSDNLLSTVPSLIY------IPYLKSINLAHNPIHQIS---- 142 (207)
Q Consensus 78 ~~~~L~~L~l~~n-~l~~~~----~~~f~~l~~L~~L~l~~n~l~~~~~~~~------~~~L~~L~l~~n~i~~~~---- 142 (207)
..++|++|++++| .+.... ...+...++|+.|++++|.+..-..... .+.|+.|++++|.|....
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 4677888888888 776432 3455667788888888888764222111 467888899988887643
Q ss_pred ccccCCCCCccEEec--CCCceeeec----cccCCCCCCccEEEeCCCCCC
Q psy14766 143 SYSFQSTPGIRYIDM--SNCQIHTIY----SEAFYGSDQIRRPTITGQWKP 187 (207)
Q Consensus 143 ~~~~~~l~~L~~L~L--~~n~i~~~~----~~~~~~l~~L~~l~l~~n~l~ 187 (207)
...+...+.|++|++ ++|.|.... .+.+...++|+.|++++|.+.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 234666778999999 778887532 244555678999999998775
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.51 E-value=4.6e-07 Score=72.77 Aligned_cols=114 Identities=14% Similarity=0.337 Sum_probs=60.6
Q ss_pred ccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc--ccccceeeccC--------
Q psy14766 66 INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAH-------- 135 (207)
Q Consensus 66 i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~-------- 135 (207)
++.+...+|. ++.+|+.+.+.. .++.+...+|.++++|+.+++..+ ++.++..++ +..|+.+.+..
T Consensus 59 VtsIg~~AF~--~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQ--GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVE 134 (394)
T ss_dssp EEEECTTTTT--TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTT
T ss_pred EeEhHHHHhh--CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecce
Confidence 3445555554 455555555543 355555555555555555555432 444444444 33333333221
Q ss_pred -------------CccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCC
Q psy14766 136 -------------NPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQ 184 (207)
Q Consensus 136 -------------n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n 184 (207)
+....+...+|.++.+|+.+.+.++ +..+...+|.++.+|+.+.+..|
T Consensus 135 aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp TTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred eeecccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC
Confidence 1223334455666777777777543 45566666777777777776655
No 152
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.50 E-value=4.3e-08 Score=82.53 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=62.5
Q ss_pred CCceEEEeecCCccccchhhhhhcCCCcceEEEecCC-cceeeC-chhhcCCCCCCEEEcCCCCCCCcCCc-----cc-c
Q psy14766 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVD-DRAFRGVTNMDELDLSDNLLSTVPSL-----IY-I 125 (207)
Q Consensus 54 ~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~-~~~f~~l~~L~~L~l~~n~l~~~~~~-----~~-~ 125 (207)
+.++.|+++++.++......+.. .+++|++|++++| .++... +..+.++++|+.|++++|.++..... .. +
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAK-SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHH-HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHH-hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 46888888888776544444321 3678888888877 444321 23344677888888888775532211 11 5
Q ss_pred cccceeeccCCcccccccc----ccCCCCCccEEecCCC
Q psy14766 126 PYLKSINLAHNPIHQISSY----SFQSTPGIRYIDMSNC 160 (207)
Q Consensus 126 ~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n 160 (207)
++|+.|++++|. ..+... ....+++|++|++++|
T Consensus 184 ~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 184 TSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 577778877775 222211 1223567777777765
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.46 E-value=1.2e-08 Score=77.65 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=41.3
Q ss_pred ccccceeeccCCccccccc--cccCCCCCccEEecCCCceeeecc-ccCCCCCCccEEEeCCCCCCCCC
Q psy14766 125 IPYLKSINLAHNPIHQISS--YSFQSTPGIRYIDMSNCQIHTIYS-EAFYGSDQIRRPTITGQWKPRQN 190 (207)
Q Consensus 125 ~~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~l~l~~n~l~~~~ 190 (207)
+++|+.|++++|.++++.+ ..+..+++|+.|+|++|+|+++.. ..+..+ +|+.|++.+|++++..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTF 236 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcccc
Confidence 5667777777777776542 334466777777777777776631 223333 6777777777776543
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.42 E-value=1.5e-07 Score=74.86 Aligned_cols=130 Identities=13% Similarity=0.098 Sum_probs=73.1
Q ss_pred CCceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhc--CCCCCCEEEcCC--CC------CCCcCCcc
Q psy14766 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR--GVTNMDELDLSD--NL------LSTVPSLI 123 (207)
Q Consensus 54 ~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~--~l~~L~~L~l~~--n~------l~~~~~~~ 123 (207)
++++.|.++++.-..+++ + ..++|+.|++..+.+.......+. .+++|+.|+++. +. +..+....
T Consensus 172 P~L~~L~L~g~~~l~l~~--~---~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLSIGK--K---PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp TTCCEEEEECCBTCBCCS--C---BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred CCCcEEEEeCCCCceecc--c---cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 367777776662112222 1 356677777766665433222333 577888887742 11 11111111
Q ss_pred --c-ccccceeeccCCcccccccccc---CCCCCccEEecCCCceeeecc----ccCCCCCCccEEEeCCCCCCC
Q psy14766 124 --Y-IPYLKSINLAHNPIHQISSYSF---QSTPGIRYIDMSNCQIHTIYS----EAFYGSDQIRRPTITGQWKPR 188 (207)
Q Consensus 124 --~-~~~L~~L~l~~n~i~~~~~~~~---~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~l~l~~n~l~~ 188 (207)
. +++|+.|++.+|.+.......+ ..+++|++|+|+.|.+.+... ..+..+++|+.|++++|.++.
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 1 5778888888877764222111 246778888888888776321 222346778888888887763
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.41 E-value=2.3e-06 Score=68.68 Aligned_cols=85 Identities=20% Similarity=0.389 Sum_probs=57.6
Q ss_pred chhhcCCCCCCEEEcCCCCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCC
Q psy14766 97 DRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSD 174 (207)
Q Consensus 97 ~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 174 (207)
...|.+..+|+.+.+..+ ++.++..+| +.+|+.+++.. .+..+...+|.++.+|+.+++..+ ++.+...+|.++.
T Consensus 290 ~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred cccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 445666666666666543 566666666 66777777753 366677777777777777777655 7777777777777
Q ss_pred CccEEEeCCC
Q psy14766 175 QIRRPTITGQ 184 (207)
Q Consensus 175 ~L~~l~l~~n 184 (207)
+|+.+++..+
T Consensus 367 ~L~~i~lp~~ 376 (394)
T 4fs7_A 367 NLKKVELPKR 376 (394)
T ss_dssp TCCEEEEEGG
T ss_pred CCCEEEECCC
Confidence 7777777654
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.39 E-value=1.6e-06 Score=69.58 Aligned_cols=123 Identities=10% Similarity=0.241 Sum_probs=92.9
Q ss_pred CceEEEeecCCccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCCCCCCCcCCccc--ccccceee
Q psy14766 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSIN 132 (207)
Q Consensus 55 ~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~ 132 (207)
.++.+.+..+ +..+...+|. ++.+|+.+.+. +.++.+...+|.++.+|+.+++.. .++.++..+| +.+|+.+.
T Consensus 266 ~L~~i~lp~~-~~~I~~~aF~--~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 266 YLASVKMPDS-VVSIGTGAFM--NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp SCCEEECCTT-CCEECTTTTT--TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEE
T ss_pred cccEEecccc-cceecCcccc--cccccccccCC-CcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEEE
Confidence 5777777544 4567777887 78999999996 568899999999999999999975 4888988888 78999999
Q ss_pred ccCCccccccccccCCCCCccEEecCCCceeeeccccCCCCCCccEEEeCCCCC
Q psy14766 133 LAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWK 186 (207)
Q Consensus 133 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~l~~n~l 186 (207)
+.. .++.+...+|.+|.+|+.+++.++.... ..+.....|+.+.+..|.+
T Consensus 341 ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 341 IPS-SVTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp ECT-TCCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred ECc-ccCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 965 4888999999999999999999876432 3466777888888876644
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.34 E-value=6e-08 Score=69.94 Aligned_cols=109 Identities=12% Similarity=0.103 Sum_probs=81.1
Q ss_pred CCceEEEeecC-Cccccchh----hhhhcCCCcceEEEecCCcceeeC----chhhcCCCCCCEEEcCCCCCCCcCC---
Q psy14766 54 LDTQVLDLSSN-NINVLQKE----IFLQMGITNIQKLYLRKCKLEFVD----DRAFRGVTNMDELDLSDNLLSTVPS--- 121 (207)
Q Consensus 54 ~~l~~L~ls~n-~i~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~----~~~f~~l~~L~~L~l~~n~l~~~~~--- 121 (207)
+.++.|++++| .++..... .+. ..++|++|++++|.+.... ...+...++|+.|++++|.++.-..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~--~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALK--TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHT--TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHH--hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 47999999999 98754332 333 4688999999999987543 3455666899999999999875322
Q ss_pred --ccc-ccccceeec--cCCccccccc----cccCCCCCccEEecCCCceee
Q psy14766 122 --LIY-IPYLKSINL--AHNPIHQISS----YSFQSTPGIRYIDMSNCQIHT 164 (207)
Q Consensus 122 --~~~-~~~L~~L~l--~~n~i~~~~~----~~~~~l~~L~~L~L~~n~i~~ 164 (207)
... ...|+.|++ ++|.+..... ..+...+.|++|++++|.+..
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 112 568999999 8899877532 345556889999999998853
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=1.1e-06 Score=66.88 Aligned_cols=100 Identities=15% Similarity=0.139 Sum_probs=67.5
Q ss_pred EEecCCcceeeC---chhhcCCCCCCEEEcCCCCCCCcCCcc---c-ccccceeeccCCccccccc-cccCCCCCccEEe
Q psy14766 85 LYLRKCKLEFVD---DRAFRGVTNMDELDLSDNLLSTVPSLI---Y-IPYLKSINLAHNPIHQISS-YSFQSTPGIRYID 156 (207)
Q Consensus 85 L~l~~n~l~~~~---~~~f~~l~~L~~L~l~~n~l~~~~~~~---~-~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~ 156 (207)
++++.|....+. +-...++++|+.|++++|+++.++... . +++|+.|+|++|.++++.. ..+..+ +|+.|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence 566666544332 122346788999999999988765422 2 8899999999999988732 234444 899999
Q ss_pred cCCCceee-ec------cccCCCCCCccEEEeCCCCCC
Q psy14766 157 MSNCQIHT-IY------SEAFYGSDQIRRPTITGQWKP 187 (207)
Q Consensus 157 L~~n~i~~-~~------~~~~~~l~~L~~l~l~~n~l~ 187 (207)
|++|.+++ ++ ...+..+++|+.|+ +..++
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD--g~~v~ 262 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD--GHELP 262 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES--SCBCC
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeEC--CcCCC
Confidence 99999875 22 13456677787765 44443
No 159
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.06 E-value=3.7e-06 Score=66.89 Aligned_cols=148 Identities=13% Similarity=0.166 Sum_probs=93.7
Q ss_pred CeeEEecCCCCcccCCCCCCCceEEEeecCCccccchhhhhhcCCCcceEEEecC--Cc------ceeeCchhh--cCCC
Q psy14766 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK--CK------LEFVDDRAF--RGVT 104 (207)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~~~l~~L~ls~n~i~~~~~~~~~~~~~~~L~~L~l~~--n~------l~~~~~~~f--~~l~ 104 (207)
.+.+.+++..-..++....++++.|.+..+.++.-....+....+++|+.|+++. +. +..+. ..+ ..++
T Consensus 174 L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~-~~l~~~~~p 252 (362)
T 2ra8_A 174 LNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR-PLFSKDRFP 252 (362)
T ss_dssp CCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG-GGSCTTTCT
T ss_pred CcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH-HHHhcCCCC
Confidence 4556665542123443224689999999988874333333322579999999853 11 11111 123 2478
Q ss_pred CCCEEEcCCCCCCCc-CCcc---c-ccccceeeccCCcccccccc----ccCCCCCccEEecCCCceeeeccccCCC-CC
Q psy14766 105 NMDELDLSDNLLSTV-PSLI---Y-IPYLKSINLAHNPIHQISSY----SFQSTPGIRYIDMSNCQIHTIYSEAFYG-SD 174 (207)
Q Consensus 105 ~L~~L~l~~n~l~~~-~~~~---~-~~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~ 174 (207)
+|+.|++.+|.+... .... . +++|+.|+++.|.+...... .+..+++|+.|++++|.+++.....+.. +
T Consensus 253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al- 331 (362)
T 2ra8_A 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL- 331 (362)
T ss_dssp TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-
T ss_pred CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-
Confidence 999999998887631 1111 1 78999999999998875322 2345689999999999887643333332 2
Q ss_pred CccEEEeCCCC
Q psy14766 175 QIRRPTITGQW 185 (207)
Q Consensus 175 ~L~~l~l~~n~ 185 (207)
...+++++++
T Consensus 332 -g~~~~~~~~~ 341 (362)
T 2ra8_A 332 -PMKIDVSDSQ 341 (362)
T ss_dssp -CSEEECCSBC
T ss_pred -CCEEEecCCc
Confidence 3568888887
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.81 E-value=5.5e-06 Score=58.93 Aligned_cols=80 Identities=9% Similarity=0.129 Sum_probs=37.3
Q ss_pred cceEEEecCCcceeeCchhhcCCCCCCEEEcCCCC-CCCcC--Cccc----ccccceeeccCCc-cccccccccCCCCCc
Q psy14766 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL-LSTVP--SLIY----IPYLKSINLAHNP-IHQISSYSFQSTPGI 152 (207)
Q Consensus 81 ~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~n~-l~~~~--~~~~----~~~L~~L~l~~n~-i~~~~~~~~~~l~~L 152 (207)
+|+.|+++++.++...-..+.++++|+.|+++++. ++.-. .... .++|+.|+++++. ++...-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34555555544443333334445555555555542 22110 0000 1246666666653 555443445556666
Q ss_pred cEEecCCC
Q psy14766 153 RYIDMSNC 160 (207)
Q Consensus 153 ~~L~L~~n 160 (207)
++|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 66666665
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.81 E-value=4.3e-05 Score=51.64 Aligned_cols=55 Identities=13% Similarity=0.208 Sum_probs=33.9
Q ss_pred EEEcCCCCCC--CcCCcccccccceeeccCCccccccccccCCCCCccEEecCCCcee
Q psy14766 108 ELDLSDNLLS--TVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163 (207)
Q Consensus 108 ~L~l~~n~l~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~ 163 (207)
.++.++++++ .+|.. ...+++.|+|++|+|+.++++.|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566666665 56543 2245666666666666666666666666666666666554
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.79 E-value=3.7e-06 Score=59.83 Aligned_cols=84 Identities=10% Similarity=0.107 Sum_probs=63.2
Q ss_pred CCCCEEEcCCCCCCCcCCccc--ccccceeeccCCc-cccccccccCCC----CCccEEecCCCc-eeeeccccCCCCCC
Q psy14766 104 TNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP-IHQISSYSFQST----PGIRYIDMSNCQ-IHTIYSEAFYGSDQ 175 (207)
Q Consensus 104 ~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~l~~n~-i~~~~~~~~~~l----~~L~~L~L~~n~-i~~~~~~~~~~l~~ 175 (207)
..|+.||++++.++...-... +++|+.|+++++. ++...-..+..+ ++|++|++++|. |++.--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 469999999998764332222 8999999999985 776554445553 479999999974 88654455678999
Q ss_pred ccEEEeCCCC-CC
Q psy14766 176 IRRPTITGQW-KP 187 (207)
Q Consensus 176 L~~l~l~~n~-l~ 187 (207)
|+.|++++++ ++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 9999999984 54
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.28 E-value=0.00016 Score=52.30 Aligned_cols=109 Identities=14% Similarity=0.087 Sum_probs=71.7
Q ss_pred CCCcceEEEecCC-cceeeC----chhhcCCCCCCEEEcCCCCCCCcCCccc------ccccceeeccCCccccccc---
Q psy14766 78 GITNIQKLYLRKC-KLEFVD----DRAFRGVTNMDELDLSDNLLSTVPSLIY------IPYLKSINLAHNPIHQISS--- 143 (207)
Q Consensus 78 ~~~~L~~L~l~~n-~l~~~~----~~~f~~l~~L~~L~l~~n~l~~~~~~~~------~~~L~~L~l~~n~i~~~~~--- 143 (207)
.-++|++|+++++ .+.... .+++..-+.|+.|+|++|.+........ -..|+.|++++|.|.....
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3467888888875 665321 3466667788899998888874433322 4678899999998876443
Q ss_pred -cccCCCCCccEEecCCC---ceeee----ccccCCCCCCccEEEeCCCCC
Q psy14766 144 -YSFQSTPGIRYIDMSNC---QIHTI----YSEAFYGSDQIRRPTITGQWK 186 (207)
Q Consensus 144 -~~~~~l~~L~~L~L~~n---~i~~~----~~~~~~~l~~L~~l~l~~n~l 186 (207)
+.+..-+.|+.|+|++| .+..- ..+++..-+.|+.|+++.|.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 34555567999999865 33321 123455567788888876643
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.92 E-value=0.00042 Score=50.08 Aligned_cols=108 Identities=8% Similarity=0.116 Sum_probs=74.3
Q ss_pred CCceEEEeecC-Cccccc----hhhhhhcCCCcceEEEecCCcceeeCc----hhhcCCCCCCEEEcCCCCCCCcCCccc
Q psy14766 54 LDTQVLDLSSN-NINVLQ----KEIFLQMGITNIQKLYLRKCKLEFVDD----RAFRGVTNMDELDLSDNLLSTVPSLIY 124 (207)
Q Consensus 54 ~~l~~L~ls~n-~i~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~f~~l~~L~~L~l~~n~l~~~~~~~~ 124 (207)
..++.|++++| .|.... .+.+. .-..|+.|++++|++..... +.+..-+.|+.|+|++|.+..-.....
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~--~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAAC--NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHT--TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHh--hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 36899999985 887433 23333 45789999999999885543 455567899999999999885433222
Q ss_pred ------ccccceeeccCC---cccccc----ccccCCCCCccEEecCCCcee
Q psy14766 125 ------IPYLKSINLAHN---PIHQIS----SYSFQSTPGIRYIDMSNCQIH 163 (207)
Q Consensus 125 ------~~~L~~L~l~~n---~i~~~~----~~~~~~l~~L~~L~L~~n~i~ 163 (207)
-..|+.|++++| .+.... ...+..-+.|..|+++.|.+.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 456999999865 333321 123445578999999877653
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=91.27 E-value=0.28 Score=31.01 Aligned_cols=46 Identities=7% Similarity=0.130 Sum_probs=28.4
Q ss_pred CCCCCcCCccc--ccccceeeccCCccccccccccCCCCCccEEecCCC
Q psy14766 114 NLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNC 160 (207)
Q Consensus 114 n~l~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n 160 (207)
..++.+...+| +.+|+.+.+.. .++.+...+|.+|.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCC
Confidence 34556666666 66666666644 355666666667777776666543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=90.93 E-value=0.22 Score=31.51 Aligned_cols=46 Identities=24% Similarity=0.429 Sum_probs=23.5
Q ss_pred CccccchhhhhhcCCCcceEEEecCCcceeeCchhhcCCCCCCEEEcCC
Q psy14766 65 NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113 (207)
Q Consensus 65 ~i~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~l~~L~~L~l~~ 113 (207)
.++.+...+|. ++.+|+.+.+..+ ++.+...+|.++.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~--~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFA--GNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTT--TCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhc--CCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444555554 5555555555442 4455555555555555555543
No 167
>2ljs_A Trypsin inhibitor 3; beta strand, helix, cyclic backbone, hydrolase inhibitor; HET: PCA; NMR {Momordica cochinchinensis}
Probab=27.52 E-value=16 Score=16.86 Aligned_cols=11 Identities=45% Similarity=1.087 Sum_probs=9.0
Q ss_pred cCCCCCCEeee
Q psy14766 21 ASCPLGCSCKW 31 (207)
Q Consensus 21 ~~cp~~c~c~~ 31 (207)
++||..|.|..
T Consensus 15 sdcpgecic~~ 25 (30)
T 2ljs_A 15 SDCPGECICKG 25 (30)
T ss_dssp GGSSTTCCBCT
T ss_pred cCCchhheecc
Confidence 68999999973
Done!