RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14766
(207 letters)
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 52.2 bits (126), Expect = 1e-09
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ LDLS+N + V+ F + N++ L L L + AF G+ ++ LDLS N L
Sbjct: 3 KSLDLSNNRLTVIPDGAFKGL--PNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 51.0 bits (123), Expect = 3e-09
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPI 138
N++ L L +L + D AF+G+ N+ LDLS N L+++ + +P L+S++L+ N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 41.8 bits (99), Expect = 8e-06
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 128 LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIR 177
LKS++L++N + I +F+ P ++ +D+S + +I EAF G +R
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLR 51
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 35.9 bits (84), Expect = 6e-04
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISS 143
TN++ LDLS+N ++ +P L +P L++++L+ N I +S
Sbjct: 1 TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSP 40
Score = 33.6 bits (78), Expect = 0.005
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSL 122
TN++ L L ++ + + N++ LDLS N ++ + L
Sbjct: 1 TNLETLDLSNNQITDLP--PLSNLPNLETLDLSGNKITDLSPL 41
Score = 25.5 bits (57), Expect = 3.3
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
+ LDLS+N I L + + N++ L L K+ +
Sbjct: 4 ETLDLSNNQITDL-PPLS---NLPNLETLDLSGNKITDLS 39
>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies). This family
includes a number of leucine rich repeats. This family
contains a large number of BSPA-like surface antigens
from Trichomonas vaginalis.
Length = 128
Score = 34.0 bits (79), Expect = 0.013
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 17/91 (18%)
Query: 92 LEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPY--------LKSINLAHNPIHQISS 143
+ + + AF G T++ + L SL I L SI + + + I
Sbjct: 22 VTSIGEYAFSGCTSLKSITLPS-------SLTSIGSYAFYNCSSLTSITIPSS-LTSIGE 73
Query: 144 YSFQSTPGIRYIDMSNCQIHTIYSEAFYGSD 174
Y+F + + I + + + TI S AF
Sbjct: 74 YAFSNCSSLTSITIPS-NLTTIGSYAFSNCS 103
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 33.8 bits (77), Expect = 0.051
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LDL +NNI + I L N+++L L K+E + R + N+ LDLS N L
Sbjct: 119 TSLDLDNNNITDIPPLIGLLKS--NLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDL 175
Query: 117 STVPSLIYI-PYLKSINLAHNPIHQISS 143
S +P L+ L +++L+ N I +
Sbjct: 176 SDLPKLLSNLSNLNNLDLSGNKISDLPP 203
Score = 26.9 bits (59), Expect = 8.5
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM---DELDLSD 113
+ LDLS+N+I L + + N+ L L KLE + + + N+ + LDLS+
Sbjct: 212 EELDLSNNSIIELLSSLS---NLKNLSGLELSNNKLEDLPE----SIGNLSNLETLDLSN 264
Query: 114 NLLSTVPSLIYIPYLKSINLAHNPI 138
N +S++ SL + L+ ++L+ N +
Sbjct: 265 NQISSISSLGSLTNLRELDLSGNSL 289
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 33.3 bits (76), Expect = 0.082
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 59 LDLSSNNINVLQKEIFLQMG-ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
LDL NN L I +G + N+Q L+L + KL + + + LDLSDN LS
Sbjct: 241 LDLVYNN---LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297
Query: 118 -TVPSLIYIPYLKSINLAH 135
+P L+ L+++ + H
Sbjct: 298 GEIPELVI--QLQNLEILH 314
Score = 32.9 bits (75), Expect = 0.12
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q+L L+ N + F G ++ L L + + R ++ + +L LS+N L
Sbjct: 455 QMLSLARNKFFGGLPDSF---GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511
Query: 117 S-TVPS-LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
S +P L L S++L+HN + SF P + +D+S Q+
Sbjct: 512 SGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559
Score = 31.7 bits (72), Expect = 0.28
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 109 LDLS-DNLLSTVPSLIY-IPYLKSINLAHNPIH-QISSYSFQSTPGIRYIDMSN 159
+DLS N+ + S I+ +PY+++INL++N + I F ++ +RY+++SN
Sbjct: 74 IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN 127
>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine
Kinase, Activated Cdc42-associated kinase. Protein
Tyrosine Kinase (PTK) family; Activated Cdc42-associated
kinase (Ack) subfamily; catalytic (c) domain. Ack
subfamily members include Ack1, thirty-eight-negative
kinase 1 (Tnk1), and similar proteins. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ack
subfamily members are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal catalytic domain, an
SH3 domain, a Cdc42-binding CRIB domain, and a
proline-rich region. They are mainly expressed in brain
and skeletal tissues and are involved in the regulation
of cell adhesion and growth, receptor degradation, and
axonal guidance. Ack1 is also associated with
androgen-independent prostate cancer progression. Tnk1
regulates TNFalpha signaling and may play an important
role in cell death.
Length = 257
Score = 30.4 bits (69), Expect = 0.55
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 128 LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
L+ L H I + Y+ Q G+RY++ IH
Sbjct: 86 LRKDALGHFLISTLCDYAVQIANGMRYLESKRF-IH 120
>gnl|CDD|214470 smart00013, LRRNT, Leucine rich repeat N-terminal domain.
Length = 33
Score = 26.5 bits (59), Expect = 1.3
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQ 57
CP C+C V+C R +P + DT
Sbjct: 2 CPAPCNC----SGTAVDCSGRGLTEVPLDLPPDTT 32
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 26.2 bits (59), Expect = 1.5
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 57 QVLDLSSNNINVLQKEIF 74
+ LDLS+N ++ L F
Sbjct: 5 RELDLSNNQLSSLPPGAF 22
Score = 25.0 bits (56), Expect = 3.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 104 TNMDELDLSDNLLSTVPS 121
N+ ELDLS+N LS++P
Sbjct: 2 PNLRELDLSNNQLSSLPP 19
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most
populated) subfamily.
Length = 24
Score = 26.2 bits (59), Expect = 1.5
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 57 QVLDLSSNNINVLQKEIF 74
+ LDLS+N ++ L F
Sbjct: 5 RELDLSNNQLSSLPPGAF 22
Score = 25.0 bits (56), Expect = 3.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 104 TNMDELDLSDNLLSTVPS 121
N+ ELDLS+N LS++P
Sbjct: 2 PNLRELDLSNNQLSSLPP 19
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 29.0 bits (65), Expect = 2.2
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 105 NMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMS 158
+D L + + + L +L+SINL+ N I S S + +D+S
Sbjct: 424 GLDNQGLRGFIPNDISKL---RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS 474
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 28.5 bits (64), Expect = 2.5
Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 34/129 (26%)
Query: 57 QVLDLSSNNINVLQKEIF---LQMGITNIQKLYLRKCKLEFVDDRAFRGVT--------N 105
Q LDLS N + + L+ +++Q+L L L DR R +
Sbjct: 84 QELDLSDNALGPDGCGVLESLLR--SSSLQELKLNNNGLG---DRGLRLLAKGLKDLPPA 138
Query: 106 MDELDLSDNLLSTVPS------LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYI--DM 157
+++L L N L L LK +NLA+N I GIR + +
Sbjct: 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD---------AGIRALAEGL 189
Query: 158 -SNCQIHTI 165
+NC + +
Sbjct: 190 KANCNLEVL 198
>gnl|CDD|223927 COG0858, RbfA, Ribosome-binding factor A [Translation, ribosomal
structure and biogenesis].
Length = 118
Score = 27.6 bits (62), Expect = 2.6
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 82 IQKLYLRKC-KLEFVDDRAFRGVTNMDEL 109
++L LRK +L FV D + +D L
Sbjct: 81 GKRLRLRKTPELHFVYDDSIENGNKIDAL 109
>gnl|CDD|188515 TIGR04000, thiol_BshB2, bacillithiol biosynthesis deacetylase
BshB2. Members of this protein family are BshB2 (YojG),
an enzyme of bacillithiol biosynthesis; either BshB1
(YpjG) or BshB2 must be present, and often both are
present. Bacillithiol is a low-molecular-weight thiol,
an analog of glutathione and mycothiol, and is found
largely in the Firmicutes [Biosynthesis of cofactors,
prosthetic groups, and carriers, Glutathione and
analogs].
Length = 217
Score = 27.4 bits (61), Expect = 4.7
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 77 MGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI 123
MGIT+++ L LR +EF DD + ++ + + PSLI
Sbjct: 71 MGITDLRMLGLRDKTIEFEDD------EELADM-VKGIIEELNPSLI 110
>gnl|CDD|132518 TIGR03478, DMSO_red_II_bet, DMSO reductase family type II enzyme,
iron-sulfur subunit. This model represents the
iron-sulfur subunit, typically called the beta subunit,
of various proteins that also contain a molybdopterin
subunit and a heme b subunit. The group includes two
distinct but very closely related periplasmic proteins
of anaerobic respiration, selenate reductase and
chlorate reductase. Other members of this family include
dimethyl sulphide dehydrogenase and ethylbenzene
dehydrogenase [Energy metabolism, Anaerobic, Energy
metabolism, Electron transport].
Length = 321
Score = 27.4 bits (61), Expect = 5.3
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 166 YSEAFY-GSDQIRRPTITGQWKPRQNEDSDA 195
+ E Y G D+ RP T W P +ED A
Sbjct: 86 HEEVLYEGKDETVRPHPTPTWGPNWDEDQGA 116
>gnl|CDD|173305 PRK14844, PRK14844, bifunctional DNA-directed RNA polymerase
subunit beta/beta'; Provisional.
Length = 2836
Score = 27.7 bits (61), Expect = 6.6
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 34 GKRTVECIDRNFYTIP--EGIDLDTQVL 59
G+++ +C D + YT P EG +D QV
Sbjct: 927 GEKSFDCADSSLYTSPDVEGTVIDVQVF 954
>gnl|CDD|220795 pfam10520, Kua-UEV1_localn, Kua-ubiquitin conjugating enzyme hybrid
localisation domain. This domain is part of the
transcript of the fusion of two genes, the UEV1, an
enzymatically inactive variant of the E2
ubiquitin-conjugating enzymes that regulate
non-canonical elongation of ubiquitin chains, and Kua,
an otherwise unknown gene. UEV1A is a nuclear protein,
whereas both Kua and Kua-UEV localise to cytoplasmic
structures, indicating that the addition of a Kua domain
to UEV confers new biological properties. UEV1-Kua
carries the B domain with its characteristic double
histidine motif, and it is probably this domain which
determines the cytoplasmic localisation. It is
postulated that this hybrid transcript could
preferentially direct the variant polyubiquitination of
substrates closely associated with the cytoplasmic face
of the endoplasmic reticulum, possibly, although not
necessarily, in conjunction with membrane-bound
ubiquitin-conjugating enzymes.
Length = 178
Score = 26.5 bits (59), Expect = 7.4
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 98 RAFRG-------VTNMDELDL-SDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQST 149
R FR +T D ++ DN L+++P L + + N + + F T
Sbjct: 31 RPFREHHVDPTAITRHDFIETNGDNCLASIPVLAILAATLATNAPSALTYWYGWHVFLLT 90
Query: 150 PGIRYIDMSNCQIH 163
I ++ ++N QIH
Sbjct: 91 FAI-FVALTN-QIH 102
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.414
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,204,327
Number of extensions: 916282
Number of successful extensions: 711
Number of sequences better than 10.0: 1
Number of HSP's gapped: 689
Number of HSP's successfully gapped: 37
Length of query: 207
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 115
Effective length of database: 6,857,034
Effective search space: 788558910
Effective search space used: 788558910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.4 bits)