RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14766
(207 letters)
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 140 bits (355), Expect = 1e-40
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 7/167 (4%)
Query: 14 LLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEI 73
L + + SCP C C + C + +P+ + T +LDLS NN++ L+ E
Sbjct: 3 LASGRSVVSCPANCLC----ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEW 58
Query: 74 FLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSI 131
+TN+ L L L F+ AF V N+ LDLS N L T+ + L+ +
Sbjct: 59 TPT-RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117
Query: 132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRR 178
L +N I + +F+ ++ + +S QI E +++ +
Sbjct: 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK 164
Score = 58.7 bits (142), Expect = 1e-10
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM---DELDLSD 113
+VL L +N+I V+ + F + +QKLYL + ++ + + LDLS
Sbjct: 115 EVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172
Query: 114 NLLSTVP--SLIYIPYLK--SINLAHNPIH 139
N L +P L +P + L +NP+
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 132 bits (334), Expect = 6e-37
Identities = 49/175 (28%), Positives = 88/175 (50%), Gaps = 7/175 (4%)
Query: 1 MCHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLD 60
+ + + + AS +CP CSC + V C R +P+GI +T+ L+
Sbjct: 24 LTAQVWILCAAIAAAASAGPQNCPSVCSCSNQF--SKVVCTRRGLSEVPQGIPSNTRYLN 81
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
L NNI ++Q + F + +++ L L + + ++ AF G+ +++ L+L DN L+ +P
Sbjct: 82 LMENNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 121 S--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNC-QIHTIYSEAFYG 172
S Y+ L+ + L +NPI I SY+F P + +D+ ++ I AF G
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194
Score = 96.4 bits (240), Expect = 1e-23
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDDRAFRGVTNMDELDLSDNL 115
+ L L +N I + F + ++ +L L + KLE++ + AF G+ N+ L+L
Sbjct: 150 RELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207
Query: 116 LSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQ 175
+ +P+L + L+ + ++ N +I SF ++ + + N Q+ I AF G
Sbjct: 208 IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267
Query: 176 IRR 178
+
Sbjct: 268 LVE 270
Score = 77.5 bits (191), Expect = 5e-17
Identities = 19/130 (14%), Positives = 54/130 (41%), Gaps = 7/130 (5%)
Query: 57 QVLDLSSNN-INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
LDL + + + F G+ N++ L L C ++ + + + ++EL++S N
Sbjct: 174 MRLDLGELKKLEYISEGAFE--GLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNH 229
Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGS 173
+ S + LK + + ++ + I +F + +++++ + ++ + F
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289
Query: 174 DQIRRPTITG 183
+ +
Sbjct: 290 RYLVELHLHH 299
Score = 73.6 bits (181), Expect = 1e-15
Identities = 25/99 (25%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 44 NFYTIPEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102
N +P L + L++S N+ ++ F + ++++KL++ ++ ++ AF G
Sbjct: 207 NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL--SSLKKLWVMNSQVSLIERNAFDG 264
Query: 103 VTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIH 139
+ ++ EL+L+ N LS++P ++ + YL ++L HNP +
Sbjct: 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 130 bits (328), Expect = 4e-36
Identities = 54/172 (31%), Positives = 95/172 (55%), Gaps = 8/172 (4%)
Query: 5 FILSVFLLTLLASVTQA-SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSS 63
+LSV L+ +A A +CP CSC + V C+ +N +P+GI +T++L+L
Sbjct: 16 SLLSVLLMGCVAETGSAQTCPSVCSCSNQF--SKVICVRKNLREVPDGISTNTRLLNLHE 73
Query: 64 NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS-- 121
N I +++ F + +++ L L + + ++ AF G+ N++ L+L DN L+T+P+
Sbjct: 74 NQIQIIKVNSFKHL--RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA 131
Query: 122 LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNC-QIHTIYSEAFYG 172
+Y+ LK + L +NPI I SY+F P +R +D+ ++ I AF G
Sbjct: 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183
Score = 95.2 bits (237), Expect = 3e-23
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDDRAFRGVTNMDELDLSDNL 115
+ L L +N I + F I ++++L L + +L ++ + AF G++N+ L+L+
Sbjct: 139 KELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196
Query: 116 LSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQ 175
L +P+L + L ++L+ N + I SFQ ++ + M QI I AF
Sbjct: 197 LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256
Query: 176 IRR 178
+
Sbjct: 257 LVE 259
Score = 79.4 bits (196), Expect = 1e-17
Identities = 27/130 (20%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Query: 57 QVLDLSSNN-INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
+ LDL ++ + + F G++N++ L L C L + + +DELDLS N
Sbjct: 163 RRLDLGELKRLSYISEGAF--EGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNH 218
Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGS 173
LS + S + +L+ + + + I I +F + + I++++ + + + F
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278
Query: 174 DQIRRPTITG 183
+ R +
Sbjct: 279 HHLERIHLHH 288
Score = 73.6 bits (181), Expect = 1e-15
Identities = 26/99 (26%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 44 NFYTIPEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102
N IP L LDLS N+++ ++ F + ++QKL++ + +++ ++ AF
Sbjct: 196 NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL--MHLQKLWMIQSQIQVIERNAFDN 253
Query: 103 VTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIH 139
+ ++ E++L+ N L+ +P ++ + +L+ I+L HNP +
Sbjct: 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 120 bits (302), Expect = 3e-32
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 6/153 (3%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
CP C C + R V C + F +PEGI +T++LDL N I L ++ F +
Sbjct: 2 GCPPRCECSAQD--RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASF--PH 57
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIH 139
+++L L + + V+ AF + N+ L L N L +P + L ++++ N I
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
+ Y FQ ++ +++ + + I AF G
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Score = 88.6 bits (220), Expect = 6e-21
Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LD+S N I +L +F + N++ L + L ++ RAF G+ ++++L L L
Sbjct: 107 TKLDISENKIVILLDYMF--QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164
Query: 117 STVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMS-NCQIHTIYSEAFYG 172
+++P +L ++ L + L H I+ I YSF+ ++ +++S + T+ YG
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223
Score = 81.7 bits (202), Expect = 2e-18
Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 28/148 (18%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT------------ 104
+ L L N+ + E + + L LR + + D +F+ +
Sbjct: 155 EQLTLEKCNLTSIPTEALSHL--HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Query: 105 ------------NMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTP 150
N+ L ++ L+ VP + ++ YL+ +NL++NPI I
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272
Query: 151 GIRYIDMSNCQIHTIYSEAFYGSDQIRR 178
++ I + Q+ + AF G + +R
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRV 300
Score = 81.7 bits (202), Expect = 2e-18
Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 4/124 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VL++S L N+ L + C L V A R + + L+LS N +
Sbjct: 203 KVLEISHWPYLDTMTPNCLYG--LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260
Query: 117 STVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSD 174
ST+ L + L+ I L + + Y+F+ +R +++S Q+ T+ F+
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320
Query: 175 QIRR 178
+
Sbjct: 321 NLET 324
Score = 75.5 bits (186), Expect = 3e-16
Identities = 15/113 (13%), Positives = 42/113 (37%), Gaps = 4/113 (3%)
Query: 53 DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
L+ L ++ N+ + + ++ L L + ++ + + E+ L
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHL--VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280
Query: 113 DNLLSTVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
L+ V + YL+ +N++ N + + F S + + + + +
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
Score = 49.7 bits (119), Expect = 1e-07
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
+ VP I + ++L N I ++ F S P + ++++ + +
Sbjct: 15 AVLCHRKRFVAVPEGIP-TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP 73
Query: 168 EAFYGSDQIRR 178
AF +R
Sbjct: 74 GAFNNLFNLRT 84
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 115 bits (289), Expect = 3e-31
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 9/154 (5%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
CP C C R V+C D +P+ + DT +LDL +N I ++ F +
Sbjct: 23 PVCPFRCQC----HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK--NLK 76
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQ 140
N+ L L K+ + AF + ++ L LS N L +P + L+ + + N I +
Sbjct: 77 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHENEITK 135
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHT--IYSEAFYG 172
+ F + +++ + + I + AF G
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169
Score = 86.2 bits (214), Expect = 2e-20
Identities = 23/118 (19%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE--FVDDRAFRGVTNMDELDLSDN 114
Q L + N I ++K +F G+ + + L L+ +++ AF+G+ + + ++D
Sbjct: 124 QELRVHENEITKVRKSVFN--GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181
Query: 115 LLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
++T+P + P L ++L N I ++ + S + + + +S I + + +
Sbjct: 182 NITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238
Score = 82.7 bits (205), Expect = 3e-19
Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 11/135 (8%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
TIP+G+ L L N I + G+ N+ KL L + VD+ + ++
Sbjct: 185 TIPQGLPPSLTELHLDGNKITKVDAASLK--GLNNLAKLGLSFNSISAVDNGSLANTPHL 242
Query: 107 DELDLSDNLLSTVPS-LIYIPYLKSINLAHNPIHQISSYSFQST------PGIRYIDMSN 159
EL L++N L VP L Y++ + L +N I I S F + + +
Sbjct: 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302
Query: 160 CQIHT--IYSEAFYG 172
+ I F
Sbjct: 303 NPVQYWEIQPSTFRC 317
Score = 51.2 bits (123), Expect = 4e-08
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 107 DELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
+ SD L VP + P ++L +N I +I F++ + + + N +I I
Sbjct: 34 RVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 92
Query: 167 SEAFYGSDQIRR 178
AF ++ R
Sbjct: 93 PGAFAPLVKLER 104
Score = 43.1 bits (102), Expect = 2e-05
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGI----TNIQKLYLR--KCKLEFVDDRAFRGVTNMDELD 110
QV+ L +NNI+ + F G + + L + + FR V +
Sbjct: 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325
Query: 111 LSDN 114
L +
Sbjct: 326 LGNY 329
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 114 bits (287), Expect = 7e-31
Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 9/163 (5%)
Query: 12 LTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQK 71
L L A CP GC C R V+C D +P+ I DT +LDL +N+I+ L+K
Sbjct: 16 LDSLPPTYSAMCPFGCHCH----LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRK 71
Query: 72 EIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSI 131
+ F G+ ++ L L K+ + ++AF + + +L +S N L +P + L +
Sbjct: 72 DDFK--GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVEL 128
Query: 132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH--TIYSEAFYG 172
+ N I ++ F + I+M + AF G
Sbjct: 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171
Score = 83.5 bits (207), Expect = 2e-19
Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 11/138 (7%)
Query: 44 NFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
IP+ + L L N I ++ E L + + +L L ++ +++ + +
Sbjct: 183 KLTGIPKDLPETLNELHLDHNKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGSLSFL 240
Query: 104 TNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQST------PGIRYID 156
+ EL L +N LS VP+ + + L+ + L N I ++ F I
Sbjct: 241 PTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300
Query: 157 MSNCQI--HTIYSEAFYG 172
+ N + + F
Sbjct: 301 LFNNPVPYWEVQPATFRC 318
Score = 78.1 bits (193), Expect = 2e-17
Identities = 19/130 (14%), Positives = 50/130 (38%), Gaps = 10/130 (7%)
Query: 47 TIPEGI--DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104
G L L +S + + K++ + +L+L K++ ++ +
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLTGIPKDLP-----ETLNELHLDHNKIQAIELEDLLRYS 217
Query: 105 NMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
+ L L N + + SL ++P L+ ++L +N + ++ + ++ + + I
Sbjct: 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNI 276
Query: 163 HTIYSEAFYG 172
+ F
Sbjct: 277 TKVGVNDFCP 286
Score = 70.8 bits (174), Expect = 6e-15
Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 13/115 (11%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L N I +++ + +++L+L KL V + + + L N +
Sbjct: 220 YRLGLGHNQIRMIENGSL--SFLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNI 276
Query: 117 STVPS--------LIYIPYLKSINLAHNPI--HQISSYSFQSTPGIRYIDMSNCQ 161
+ V + Y I+L +NP+ ++ +F+ I N +
Sbjct: 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
Score = 49.6 bits (119), Expect = 1e-07
Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 105 NMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT 164
++ + SD L VP I P ++L +N I ++ F+ + + + N +I
Sbjct: 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92
Query: 165 IYSEAFYGSDQIRR 178
I+ +AF ++++
Sbjct: 93 IHEKAFSPLRKLQK 106
Score = 41.9 bits (99), Expect = 5e-05
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 47 TIPEGI-DLDT-QVLDLSSNNINVLQKEIFLQMGI----TNIQKLYLRKCKLEF--VDDR 98
+P G+ DL QV+ L +NNI + F +G + L + + V
Sbjct: 255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314
Query: 99 AFRGVTNMDELDLSDN 114
FR VT+ + +
Sbjct: 315 TFRCVTDRLAIQFGNY 330
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 113 bits (284), Expect = 7e-31
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 6/153 (3%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C K T C + +P GI +Q + L N I+ + F N+
Sbjct: 2 CPGACVCY-NEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASF--RACRNL 58
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL-LSTVPS--LIYIPYLKSINLAHNPIH 139
L+L L +D AF G+ +++LDLSDN L +V + L +++L +
Sbjct: 59 TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
++ F+ ++Y+ + + + + + F
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Score = 85.8 bits (213), Expect = 1e-20
Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 4/124 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L + L +F + +Q LYL+ L+ + D FR + N+ L L N +
Sbjct: 108 HTLHLDRCGLQELGPGLFRGL--AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165
Query: 117 STVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSD 174
S+VP + + L + L N + + ++F+ + + + + + +EA
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225
Query: 175 QIRR 178
++
Sbjct: 226 ALQY 229
Score = 71.2 bits (175), Expect = 3e-15
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L N I+ + + F G+ ++ +L L + ++ V AFR + + L L N L
Sbjct: 156 THLFLHGNRISSVPERAF--RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 117 STVPSLIY--IPYLKSINLAHNPIH 139
S +P+ + L+ + L NP
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWV 238
Score = 68.9 bits (169), Expect = 3e-14
Identities = 27/127 (21%), Positives = 56/127 (44%), Gaps = 13/127 (10%)
Query: 47 TIPEGI--DLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
+ G+ L Q L L N + L + F + N+ L+L ++ V +RAFRG+
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFR--DLGNLTHLFLHGNRISSVPERAFRGL 176
Query: 104 TNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN-- 159
++D L L N ++ V + L ++ L N + + + + ++Y+ +++
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236
Query: 160 ----CQI 162
C+
Sbjct: 237 WVCDCRA 243
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 110 bits (278), Expect = 8e-30
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 10/154 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP CSC + C + ++P GI L+L SN + L +F +T +
Sbjct: 1 CPSRCSCS----GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFD--KLTQL 54
Query: 83 QKLYLRKCKLEFVD--DRAFRGVTNMDELDLSDNLLSTVPS-LIYIPYLKSINLAHNPIH 139
KL L L F ++ G T++ LDLS N + T+ S + + L+ ++ H+ +
Sbjct: 55 TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 114
Query: 140 QISSYS-FQSTPGIRYIDMSNCQIHTIYSEAFYG 172
Q+S +S F S + Y+D+S+ ++ F G
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148
Score = 85.8 bits (213), Expect = 2e-20
Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRAFRGVTNMDELDLSDNL 115
LD+S + V IF G+++++ L + E F + N+ LDLS
Sbjct: 129 IYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186
Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
L + + + L+ +N++HN + ++ ++ ++ +D S I T +
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245
Score = 78.1 bits (193), Expect = 1e-17
Identities = 17/119 (14%), Positives = 49/119 (41%), Gaps = 4/119 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN-L 115
+ LD +N+ + + + N+ L + + F G+++++ L ++ N
Sbjct: 104 EHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162
Query: 116 LSTVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
+ L ++L+ + Q+S +F S ++ ++MS+ ++ + +
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221
Score = 70.0 bits (172), Expect = 1e-14
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LDLS + L F ++++Q L + +D ++ + ++ LD S N +
Sbjct: 178 TFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
Query: 117 STVPSLIYIP---YLKSINLAHNPIH 139
T L +NL N
Sbjct: 236 MTSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 68.9 bits (169), Expect = 3e-14
Identities = 22/107 (20%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 57 QVLDLSSNN-INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
+VL ++ N+ +IF + N+ L L +C+LE + AF ++++ L++S N
Sbjct: 153 EVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210
Query: 116 LSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPG-IRYIDMSN 159
++ + Y + L+ ++ + N I Q P + +++++
Sbjct: 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 110 bits (276), Expect = 3e-28
Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 6/159 (3%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
S C K +T C + IP + T+ L+ S N + +Q F ++
Sbjct: 2 TSSDQKCIEKEVN--KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRL--I 57
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPI 138
N+ L L +C++ ++ + F+ +D L L+ N L + +L LK + I
Sbjct: 58 NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117
Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIR 177
I + + + + + I +I + +++++
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLK 156
Score = 85.5 bits (212), Expect = 1e-19
Identities = 23/136 (16%), Positives = 54/136 (39%), Gaps = 6/136 (4%)
Query: 43 RNFYTIPEGIDLDT----QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR 98
+N I +G+ T + + + +F + +++ + L+K +
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272
Query: 99 AFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDM 157
F + + ELDL+ LS +PS + + LK + L+ N + S + P + ++ +
Sbjct: 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332
Query: 158 S-NCQIHTIYSEAFYG 172
N + + +
Sbjct: 333 KGNTKRLELGTGCLEN 348
Score = 84.3 bits (209), Expect = 3e-19
Identities = 23/127 (18%), Positives = 57/127 (44%), Gaps = 8/127 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q LDL++ +++ L + G++ ++KL L K E + + ++ L + N
Sbjct: 281 QELDLTATHLSELPSGLV---GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337
Query: 117 STVP---SLIYIPYLKSINLAHNPIHQI--SSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
L + L+ ++L+H+ I + ++ ++ +++S + ++ +EAF
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397
Query: 172 GSDQIRR 178
Q+
Sbjct: 398 ECPQLEL 404
Score = 82.8 bits (205), Expect = 1e-18
Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
++LDL+ + V + Q + ++ L L L+ ++ F G+ + L+L N
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQ-NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461
Query: 117 STVP-----SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
SL + L+ + L+ + I ++F S + ++D+S+ ++ + EA
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520
Score = 80.4 bits (199), Expect = 5e-18
Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ LDLS ++I ++++Q L L + + AF+ ++ LDL+ L
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412
Query: 117 STVPS---LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + LK +NL+H+ + S F P ++++++
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464
Score = 78.5 bits (194), Expect = 3e-17
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 8/128 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR-AFRGVTNMDELDLSDNL 115
Q L+LS N L+ E F ++ L L +L+ D + F+ + + L+LS +L
Sbjct: 379 QSLNLSYNEPLSLKTEAF--KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436
Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQI---SSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
L +P L+ +NL N + + S Q+ + + +S C + +I AF
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496
Query: 171 YGSDQIRR 178
+
Sbjct: 497 TSLKMMNH 504
Score = 77.4 bits (191), Expect = 6e-17
Identities = 23/122 (18%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVTNMDELDLSDNL 115
+ L LS+N L + ++ L ++ K + + N+ ELDLS +
Sbjct: 304 KKLVLSANKFENLCQISASNF--PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361
Query: 116 LSTVP----SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
+ T L + +L+S+NL++N + + +F+ P + +D++ ++ +++ +
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421
Query: 172 GS 173
+
Sbjct: 422 QN 423
Score = 73.1 bits (180), Expect = 2e-15
Identities = 14/135 (10%), Positives = 41/135 (30%), Gaps = 7/135 (5%)
Query: 44 NFYTIPEGIDLDT--QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101
+ I G Q L+ ++ + I ++ E + F
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249
Query: 102 GVTNMD--ELDLSDNLLSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDM 157
G+ M ++L + + + L+ ++L + ++ S ++ + +
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVL 308
Query: 158 SNCQIHTIYSEAFYG 172
S + + +
Sbjct: 309 SANKFENLCQISASN 323
Score = 72.0 bits (177), Expect = 4e-15
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 8/112 (7%)
Query: 57 QVLDLSSNNI---NVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113
Q L+L N+ N+ + + ++ L L C L +D AF + M+ +DLS
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSL--QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509
Query: 114 NLLSTVPSLIYIPYLKS--INLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
N L++ + +LK +NLA N I I R I++ +
Sbjct: 510 NRLTSSSIEA-LSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560
Score = 65.4 bits (160), Expect = 7e-13
Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 7/121 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L I+ + ++ LYL + + + LD +N +
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQ--KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165
Query: 117 STVP--SLIYIPYLK--SINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
+ + + S+NL N I I +F S + ++ Q + +
Sbjct: 166 HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKN 224
Query: 173 S 173
S
Sbjct: 225 S 225
Score = 51.9 bits (125), Expect = 3e-08
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 5/94 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+DLS N + E + L L + + ++ ++L N L
Sbjct: 503 NHVDLSHNRLTSSSIEALSHL---KGIYLNLASNHISIILPSLLPILSQQRTINLRQNPL 559
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTP 150
S I +L+ + ++ P
Sbjct: 560 DCTCSN--IYFLEWYKENMQKLEDTEDTLCENPP 591
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 101 bits (254), Expect = 5e-27
Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 7/152 (4%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
+CP C C+ TV+C ++ IPE I T L L++N VL+ + +
Sbjct: 3 LACPEKCRCEGT----TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFK-KLP 57
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPI 138
++K+ K+ +++ AF G + ++E+ L+ N L V ++ + LK++ L N I
Sbjct: 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117
Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ + SF +R + + + QI T+ AF
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 100 bits (252), Expect = 9e-26
Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 9/172 (5%)
Query: 5 FILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSN 64
+++ V + + S ++S SC + + +IP G+ + LDLS+N
Sbjct: 6 WMVWVLGVIISLSKEESSNQASLSC---DRNGICKGSSGSLNSIPSGLTEAVKSLDLSNN 62
Query: 65 NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--L 122
I + N+Q L L + +++ +F + +++ LDLS N LS + S
Sbjct: 63 RITYISNSDLQ--RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWF 120
Query: 123 IYIPYLKSINLAHNPIHQISSYS-FQSTPGIRYIDMSNC-QIHTIYSEAFYG 172
+ L +NL NP + S F ++ + + N I + F G
Sbjct: 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172
Score = 72.1 bits (177), Expect = 3e-15
Identities = 18/132 (13%), Positives = 51/132 (38%), Gaps = 13/132 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L++ ++++ + + I N+ L L + + + ++++ L+L D L
Sbjct: 177 EELEIDASDLQSYEPKSL--KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234
Query: 117 STVP----------SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
T SLI +++ + + Q+ G+ ++ S Q+ ++
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQLKSVP 293
Query: 167 SEAFYGSDQIRR 178
F +++
Sbjct: 294 DGIFDRLTSLQK 305
Score = 64.4 bits (157), Expect = 1e-12
Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 4/112 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDDRAFRGVTNMDELDLSDNL 115
L+L N L + +T +Q L + + + F G+T ++EL++ +
Sbjct: 127 TFLNLLGNPYKTLGETSLFS-HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185
Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
L + SL I + + L + T + +++ + + T
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237
Score = 53.2 bits (128), Expect = 9e-09
Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 11/112 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK--------CKLEFVDDRAFRGVTNMDE 108
L L +L + ++++ L LR +L + +
Sbjct: 201 SHLILHMKQHILLLEIFVD--VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258
Query: 109 LDLSDNLLSTVPSLI-YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN 159
+ ++D L V L+ I L + + N + + F ++ I +
Sbjct: 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310
Score = 46.3 bits (110), Expect = 2e-06
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 54 LDTQVLDLSSNNINVLQKEIFLQ-MGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
L+ + DL + + + L + + + + L F + ++ + EL+ S
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL-FQVMKLLNQISGLLELEFS 285
Query: 113 DNLLSTVPSLIY--IPYLKSINLAHNPIH 139
N L +VP I+ + L+ I L NP
Sbjct: 286 RNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 102 bits (255), Expect = 2e-25
Identities = 29/145 (20%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
P T +C+D+ +P+ I T+ +DLS N + +L+ F + +
Sbjct: 5 NPCIEVVP----NITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNF--SEL 58
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPIHQ 140
Q L L +C++E ++D+A+ G+ ++ L L+ N + + S + L+++ +
Sbjct: 59 QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTI 165
+ S+ ++ +++++ IH+
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSC 143
Score = 81.2 bits (201), Expect = 3e-18
Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 5/120 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LDLS N ++ + +G +++ L L + F G+ + LD + L
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA-NFMGLEELQHLDFQHSTL 411
Query: 117 STVPSLIYI---PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT-IYSEAFYG 172
V L +++++ F + + M+ S F
Sbjct: 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471
Score = 79.7 bits (197), Expect = 9e-18
Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 9/121 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L+ N I F + T+++ L + KL ++ + + +L+++ N +
Sbjct: 83 SNLILTGNPIQSFSPGSFSGL--TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140
Query: 117 STVPSLIYI---PYLKSINLAHNPIHQISSYSFQS----TPGIRYIDMSNCQIHTIYSEA 169
+ Y L ++L++N I I+ Q +DMS I I +A
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200
Query: 170 F 170
F
Sbjct: 201 F 201
Score = 78.2 bits (193), Expect = 3e-17
Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 5/125 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFVDDRAFRGVTNMDELDLSDNL 115
LD+S N + IFL + T++ L + + F TN+ LDLS
Sbjct: 427 LYLDISYTNTKIDFDGIFLGL--TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484
Query: 116 LSTVPSLI--YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGS 173
L + + + L+ +N++HN + + S + + +D S +I T +
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 544
Query: 174 DQIRR 178
+
Sbjct: 545 KSLAF 549
Score = 77.4 bits (191), Expect = 7e-17
Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Query: 57 QVLDLSSNNI-NVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
L ++ N+ + +F TN+ L L KC+LE + F + + L++S N
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANT--TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508
Query: 116 LSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
L + S Y + L +++ + N I + + +++N + I
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560
Score = 75.1 bits (185), Expect = 4e-16
Identities = 19/124 (15%), Positives = 47/124 (37%), Gaps = 4/124 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q LD + + + + + + L + + D F G+T+++ L ++ N
Sbjct: 402 QHLDFQHSTLKRVTEFSAFL-SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460
Query: 117 STVP---SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGS 173
L ++L+ + QIS F + ++ ++MS+ + + S +
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520
Query: 174 DQIR 177
+
Sbjct: 521 YSLS 524
Score = 74.7 bits (184), Expect = 6e-16
Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 10/124 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L+ +I L+ Q L + +C+L+ + + L L+ N
Sbjct: 288 SAMSLAGVSIKYLEDVPKH----FKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKG 340
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQ--STPGIRYIDMSNCQIHTIYSEAFYGSD 174
S + +P L ++L+ N + S+ T +R++D+S + S F G +
Sbjct: 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLE 399
Query: 175 QIRR 178
+++
Sbjct: 400 ELQH 403
Score = 66.2 bits (162), Expect = 5e-13
Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 10/115 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD-DRAFRGVTNMDELDLSDNL 115
+ L + L+ Q+ ++KL + + F +TN+ +DLS N
Sbjct: 107 ENLVAVETKLASLESFPIGQL--ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164
Query: 116 LSTVPS-----LIYIPY-LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT 164
+ T+ L P S++++ NPI I +FQ + + + +
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSS 218
Score = 65.1 bits (159), Expect = 1e-12
Identities = 13/121 (10%), Positives = 39/121 (32%), Gaps = 9/121 (7%)
Query: 56 TQVLDLSSN------NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDEL 109
V L N+ + + I + I + L D F + N+ +
Sbjct: 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290
Query: 110 DLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
L+ + + + +S+++ Q+ + P ++ + ++ + + +
Sbjct: 291 SLAGVSIKYLEDVPKHFKWQSLSIIRC---QLKQFPTLDLPFLKSLTLTMNKGSISFKKV 347
Query: 170 F 170
Sbjct: 348 A 348
Score = 60.8 bits (148), Expect = 3e-11
Identities = 15/128 (11%), Positives = 35/128 (27%), Gaps = 14/128 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFVDDRAFRGVTNMDELDLSDNL 115
LD+S N I+ +Q + F + + +L LR + + + + L
Sbjct: 184 LSLDMSLNPIDFIQDQAFQGI---KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240
Query: 116 LSTVPSLIYIP----------YLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+L + L + F + + ++ I +
Sbjct: 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL 300
Query: 166 YSEAFYGS 173
+
Sbjct: 301 EDVPKHFK 308
Score = 57.7 bits (140), Expect = 4e-10
Identities = 14/111 (12%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q+L++S NN+ L + Q+ ++ L ++E ++ +L++N +
Sbjct: 500 QLLNMSHNNLLFLDSSHYNQL--YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPG-----IRYIDMSNCQI 162
+ + +L+ + + + + + + + S C +
Sbjct: 558 ACICEH--QKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFNNSTCYM 606
Score = 54.3 bits (131), Expect = 5e-09
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 109 LDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
D LS VP I K+I+L+ NP+ + SYSF + ++++D+S C+I TI +
Sbjct: 16 YQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK 74
Query: 169 AFYG 172
A++G
Sbjct: 75 AWHG 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 97.7 bits (244), Expect = 5e-25
Identities = 26/141 (18%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
T +C++ NFY IP+ + T+ LDLS N + L F +Q L
Sbjct: 5 EVV----PNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLD 58
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNPIHQISSY 144
L +C+++ ++D A++ ++++ L L+ N + ++ + L+ + + + ++
Sbjct: 59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118
Query: 145 SFQSTPGIRYIDMSNCQIHTI 165
++ +++++ I +
Sbjct: 119 PIGHLKTLKELNVAHNLIQSF 139
Score = 51.9 bits (125), Expect = 2e-08
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 57 QVLDLSSNNINVLQKEIF--LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
+ LDLSSN I + L L L + F+ AF+ + EL L N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTN 210
Query: 115 LLSTVPSLIY--IPYLKSINLAHNPIH 139
L +VP I+ + L+ I L NP
Sbjct: 211 QLKSVPDGIFDRLTSLQKIWLHTNPWD 237
Score = 37.3 bits (87), Expect = 0.002
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 116 LSTVPSLIYIPY-LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
+P +P+ K+++L+ NP+ + SYSF S P ++ +D+S C+I TI A+
Sbjct: 19 FYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 99.3 bits (248), Expect = 2e-24
Identities = 22/144 (15%), Positives = 57/144 (39%), Gaps = 4/144 (2%)
Query: 36 RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFV 95
+C +P+ + + VL+L+ N + L F + + + L + + +
Sbjct: 7 EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRY--SQLTSLDVGFNTISKL 64
Query: 96 DDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIR 153
+ + + + L+L N LS + + + L ++L N I +I + F +
Sbjct: 65 EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124
Query: 154 YIDMSNCQIHTIYSEAFYGSDQIR 177
+D+S+ + + + ++
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQ 148
Score = 83.1 bits (206), Expect = 7e-19
Identities = 23/114 (20%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 57 QVLDLSSNNINV--LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
+ L LS++ ++ L E F+ + + + L L K K+ ++ AF + +++ LDL N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415
Query: 115 LLSTVP---SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + + I L++N Q++ SF P ++ + + + +
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469
Score = 83.1 bits (206), Expect = 7e-19
Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 10/132 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q L L + + + N+ L L + ++D G+ ++ LDL N L
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516
Query: 117 STVPSLIYI----------PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
+ + +L +NL N +I F+ ++ ID+ ++T+
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576
Query: 167 SEAFYGSDQIRR 178
+ F ++
Sbjct: 577 ASVFNNQVSLKS 588
Score = 82.7 bits (205), Expect = 8e-19
Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 11/127 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L LS++ ++ FL + TN+ L L L V + +F + ++ L N +
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284
Query: 117 STVP--SLIYIPYLKSINLAHN---------PIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ SL + ++ +NL + + +I +SFQ + +++M + I I
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344
Query: 166 YSEAFYG 172
S F G
Sbjct: 345 KSNMFTG 351
Score = 80.4 bits (199), Expect = 6e-18
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Query: 57 QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
+VLDL N I L + + + NI ++YL K + +F V ++ L L
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGL--ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465
Query: 116 LSTVPS----LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
L V S + L ++L++N I I+ + + +D+ + + ++ A
Sbjct: 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 525
Query: 172 GS 173
G
Sbjct: 526 GG 527
Score = 80.0 bits (198), Expect = 8e-18
Identities = 28/125 (22%), Positives = 60/125 (48%), Gaps = 6/125 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VL+L N ++ L + F TN+ +L+L ++ + + F N+ LDLS N L
Sbjct: 76 KVLNLQHNELSQLSDKTFAFC--TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133
Query: 117 STVP--SLIYIPYLKSINLAHNPIHQISSYSFQ--STPGIRYIDMSNCQIHTIYSEAFYG 172
S+ + + + L+ + L++N I + S + ++ +++S+ QI F+
Sbjct: 134 SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193
Query: 173 SDQIR 177
++
Sbjct: 194 IGRLF 198
Score = 78.9 bits (195), Expect = 2e-17
Identities = 22/128 (17%), Positives = 57/128 (44%), Gaps = 7/128 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q L LS+N I L+ E ++++KL L +++ F + + L L++ L
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207
Query: 117 STVP-----SLIYIPYLKSINLAHNPIHQISSYSFQS--TPGIRYIDMSNCQIHTIYSEA 169
+ +++++L+++ + S+ +F + +D+S ++ + +++
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267
Query: 170 FYGSDQIR 177
F Q+
Sbjct: 268 FAWLPQLE 275
Score = 78.1 bits (193), Expect = 4e-17
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR---GVTNMDELDLSD 113
+ L+LSSN I F I + L+L +L T++ L LS+
Sbjct: 174 KKLELSSNQIKEFSPGCFH--AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231
Query: 114 NLLSTVPSLIY----IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
+ LST + + L ++L++N ++ + + SF P + Y + I ++S +
Sbjct: 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291
Query: 170 FYGSDQIR 177
+G +R
Sbjct: 292 LHGLFNVR 299
Score = 74.3 bits (183), Expect = 9e-16
Identities = 24/124 (19%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA--------FRGVTNMDE 108
+LDLS+NNI + ++ + ++ L L+ L + A +G++++
Sbjct: 483 TILDLSNNNIANINDDMLEGL--EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540
Query: 109 LDLSDNLLSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
L+L N +P + LK I+L N ++ + + F + ++ +++ I ++
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600
Query: 167 SEAF 170
+ F
Sbjct: 601 KKVF 604
Score = 72.0 bits (177), Expect = 5e-15
Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 8/115 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+S ++ + F + ++ L + + + F G+ N+ L LS++
Sbjct: 308 TKQSISLASLPKIDDFSFQWL--KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365
Query: 117 STVP------SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
S + L +NL N I +I S +F + +D+ +I
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420
Score = 71.6 bits (176), Expect = 6e-15
Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQM------GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110
++LDL NN+ L K G++++ L L + + F+ + + +D
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566
Query: 111 LSDNLLSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQST-PGIRYIDMSNCQIH 163
L N L+T+P LKS+NL N I + F + +DM
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622
Score = 56.2 bits (136), Expect = 1e-09
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
+ + D S L+ VP + + +NL HN + ++ + +F + +D+ I
Sbjct: 4 VSHEVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62
Query: 164 TIYSEAFYG 172
+ E
Sbjct: 63 KLEPELCQK 71
Score = 55.4 bits (134), Expect = 2e-09
Identities = 17/101 (16%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNP 137
+ + KL V D +T L+L+ N L +P + L S+++ N
Sbjct: 4 VSHEVADCSHLKLTQVPDDLPTNIT---VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 138 IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRR 178
I ++ Q P ++ +++ + ++ + + F +
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 96.7 bits (241), Expect = 1e-23
Identities = 27/141 (19%), Positives = 66/141 (46%), Gaps = 6/141 (4%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C T +C++ NFY IP+ + T+ LDLS N + L F +Q L
Sbjct: 3 CVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSF--PELQVLD 58
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIHQISSY 144
L +C+++ ++D A++ ++++ L L+ N + ++ + L+ + + + ++
Sbjct: 59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118
Query: 145 SFQSTPGIRYIDMSNCQIHTI 165
++ +++++ I +
Sbjct: 119 PIGHLKTLKELNVAHNLIQSF 139
Score = 82.5 bits (204), Expect = 1e-18
Identities = 33/141 (23%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 36 RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFV 95
+ +E ++ F P + L +SN E+ L +++ L L + L F
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL----PSLEFLDLSRNGLSFK 362
Query: 96 D--DRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYS-FQSTPG 151
++ G T++ LDLS N + T+ S + L+ ++ H+ + Q+S +S F S
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422
Query: 152 IRYIDMSNCQIHTIYSEAFYG 172
+ Y+D+S+ ++ F G
Sbjct: 423 LIYLDISHTHTRVAFNGIFNG 443
Score = 80.1 bits (198), Expect = 6e-18
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L+ N I L F G++++QKL + L +++ + + EL+++ NL+
Sbjct: 79 STLILTGNPIQSLALGAFS--GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 117 STVP---SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRY----IDMSNCQIHTIYSEA 169
+ + L+ ++L+ N I I + + +D+S ++ I A
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 170 F 170
F
Sbjct: 197 F 197
Score = 75.9 bits (187), Expect = 2e-16
Identities = 18/117 (15%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ LD +N+ + + + N+ L + + F G+++++ L ++ N
Sbjct: 399 EHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 117 STVPS---LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ L ++L+ + Q+S +F S ++ ++M++ Q+ ++ F
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514
Score = 75.5 bits (186), Expect = 2e-16
Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFVDDRAFRGVTNMDELDLSDNL 115
LD+S + V IF + ++++ L + E F + N+ LDLS
Sbjct: 424 IYLDISHTHTRVAFNGIFNGL--SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
L + + + L+ +N+A N + + F ++ I +
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
Score = 65.5 bits (160), Expect = 7e-13
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 10/126 (7%)
Query: 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
+ L S I ++ + Q L L CK + ++ L + N
Sbjct: 283 NVSSFSLVSVTIERVKDFSYN----FGWQHLELVNCKFGQFPTLKLK---SLKRLTFTSN 335
Query: 115 LLSTVPSLIYIPYLKSINLAHNPIHQIS--SYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
S + +P L+ ++L+ N + S S T ++Y+D+S + T+ S F G
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLG 394
Query: 173 SDQIRR 178
+Q+
Sbjct: 395 LEQLEH 400
Score = 61.7 bits (150), Expect = 2e-11
Identities = 21/115 (18%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD-RAFRGVTNMDELDLSDNL 115
Q L N+ L+ + +++L + ++ F +TN++ LDLS N
Sbjct: 103 QKLVAVETNLASLENFPIGHL--KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 116 LSTVP--SLIYIPYLK----SINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT 164
+ ++ L + + S++L+ NP++ I +F+ + + + N
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSL 214
Score = 53.6 bits (129), Expect = 8e-09
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LDLS + L F ++++Q L + +L+ V D F +T++ ++ L N
Sbjct: 473 TFLDLSQCQLEQLSPTAF--NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
Query: 117 STVPSLI 123
I
Sbjct: 531 DCSCPRI 537
Score = 50.5 bits (121), Expect = 1e-07
Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 15/124 (12%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF-VDDRAFRGVTNMDELDLSDNLLS 117
LDLS N +N +Q F ++ + KL LR V +G+ ++ L
Sbjct: 182 LDLSLNPMNFIQPGAFKEI---RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238
Query: 118 TVPSLIYIPY-----LKSINLAHNPIHQISSYS------FQSTPGIRYIDMSNCQIHTIY 166
+L L ++ + + + Y F + + + I +
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298
Query: 167 SEAF 170
++
Sbjct: 299 DFSY 302
Score = 46.6 bits (111), Expect = 2e-06
Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 14/131 (10%)
Query: 47 TIPEGI--DLDTQVLDLSSNNINV-LQKEIFLQMGITNIQKLYLRK----CKLEFVDDRA 99
I G ++ L L +N ++ + K + + +L L + LE D A
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250
Query: 100 FRGVTNMDELDLSDNLLSTVPSLIY-----IPYLKSINLAHNPIHQISSYSFQSTPGIRY 154
G+ N+ + L I + + S +L I ++ +S+ G ++
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--GWQH 308
Query: 155 IDMSNCQIHTI 165
+++ NC+
Sbjct: 309 LELVNCKFGQF 319
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 92.8 bits (231), Expect = 1e-23
Identities = 30/152 (19%), Positives = 65/152 (42%), Gaps = 8/152 (5%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
CP C+C V+C + IP + + L N I V+ F
Sbjct: 3 LHCPAACTCS----NNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAF--SPYK 56
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPI 138
++++ L ++ + AF+G+ +++ L L N ++ +P ++ + L+ + L N I
Sbjct: 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI 116
Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ + +FQ + + + + ++ TI F
Sbjct: 117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148
Score = 38.5 bits (90), Expect = 6e-04
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
Q+L L++N IN L+ + F + N+ L L KL+ + F + + + L+ N
Sbjct: 107 QLLLLNANKINCLRVDAFQ--DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 35.8 bits (83), Expect = 0.004
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 112 SDNLLSTVPSLIYIP-YLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
L+ +P+ +P + I L N I I +F +R ID+SN QI + +AF
Sbjct: 19 RGKGLTEIPT--NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76
Query: 171 YG 172
G
Sbjct: 77 QG 78
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 94.5 bits (235), Expect = 3e-23
Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 12/156 (7%)
Query: 23 CPLG-CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
C C C R C + IP + + L + V+QK F G +
Sbjct: 2 CHHRICHCS----NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAF--SGFGD 55
Query: 82 IQKLYLRKCK-LEFVDDRAFRGVTNMDELDLSD-NLLSTVPS--LIYIPYLKSINLAHNP 137
++K+ + + LE ++ F + + E+ + N L + +P L+ + +++
Sbjct: 56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115
Query: 138 IHQISSYSFQSTPGIRYIDMS-NCQIHTIYSEAFYG 172
I + + +D+ N IHTI +F G
Sbjct: 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151
Score = 62.9 bits (153), Expect = 5e-12
Identities = 19/120 (15%), Positives = 45/120 (37%), Gaps = 6/120 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVT-NMDELDLSDN 114
Q L +S+ I L + L ++ + ++ +F G++ L L+ N
Sbjct: 107 QYLLISNTGIKHLPDVHKIHS--LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164
Query: 115 LLSTVPSLI--YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
+ + + + +N + ++ + F G +D+S +IH++ S
Sbjct: 165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224
Score = 53.3 bits (128), Expect = 8e-09
Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)
Query: 51 GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110
G+ ++ +L L+ N I + F G + LE + + F G + LD
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAF--NGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208
Query: 111 LSDNLLSTVPS--LIYIPYLKSINLAHNPIHQISSY-SFQSTPGIRYIDMSN 159
+S + ++PS L + L++ + + + + + + ++
Sbjct: 209 ISRTRIHSLPSYGLENLKKLRARST-----YNLKKLPTLEKLVALMEASLTY 255
Score = 52.5 bits (126), Expect = 2e-08
Identities = 11/81 (13%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Query: 56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
++ +NN+ L ++F G + L + + ++ + + +
Sbjct: 180 DELNLSDNNNLEELPNDVF--HGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YN 235
Query: 116 LSTVPSLIYIPYLKSINLAHN 136
L +P+L + L +L +
Sbjct: 236 LKKLPTLEKLVALMEASLTYP 256
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 95.2 bits (237), Expect = 5e-23
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 9/150 (6%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
SC + R+F +IP G+ + LDLS N I + N+Q L
Sbjct: 2 LSC---DASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRAC--ANLQVLI 56
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIHQIS-S 143
L+ ++ ++ AF + +++ LDLSDN LS++ S + LK +NL NP + +
Sbjct: 57 LKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116
Query: 144 YSFQSTPGIRYIDMSNC-QIHTIYSEAFYG 172
F + ++ + + N I F G
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146
Score = 72.8 bits (179), Expect = 2e-15
Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 11/122 (9%)
Query: 44 NFYTIPEGIDLDT--QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101
F+ +P+ + L+LSS I V++ I ++ L + L+
Sbjct: 398 TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP-----QTLEVLDVSNNNLDSFS----L 448
Query: 102 GVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQ 161
+ + EL +S N L T+P P L + ++ N + + F ++ I +
Sbjct: 449 FLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508
Query: 162 IH 163
Sbjct: 509 WD 510
Score = 71.7 bits (176), Expect = 6e-15
Identities = 20/114 (17%), Positives = 45/114 (39%), Gaps = 10/114 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LD+S N + + ++ L L + V + + LD+S+N L
Sbjct: 390 TSLDISRNTFHPMPDSCQ---WPEKMRFLNLSSTGIRVVKTCIPQTLE---VLDVSNNNL 443
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ ++P L+ + ++ N + + S P + + +S Q+ ++ F
Sbjct: 444 DSFSL--FLPRLQELYISRNKLKTLPDASLF--PVLLVMKISRNQLKSVPDGIF 493
Score = 69.8 bits (171), Expect = 3e-14
Identities = 17/121 (14%), Positives = 49/121 (40%), Gaps = 10/121 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE---FVDDRAFRGVTNMDELDLSD 113
+ + + ++ + ++ + +++ L L + + + ++ L LS
Sbjct: 313 KRITVENSKVFLVPCSFSQHL--KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370
Query: 114 NLLSTVPSLIYI----PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
N L ++ I L S++++ N H + S Q +R++++S+ I + +
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTCI 429
Query: 170 F 170
Sbjct: 430 P 430
Score = 56.7 bits (137), Expect = 9e-10
Identities = 14/109 (12%), Positives = 37/109 (33%), Gaps = 4/109 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L++ + ++ Q + I +I L L + F+ + ++++ L+L D L
Sbjct: 151 NELEIKALSLRNYQSQSL--KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208
Query: 117 STVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
+ L + ++ SF + + ++
Sbjct: 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257
Score = 54.0 bits (130), Expect = 7e-09
Identities = 16/116 (13%), Positives = 37/116 (31%), Gaps = 4/116 (3%)
Query: 53 DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
D L I L + F + + + + V + + L +
Sbjct: 237 DESFNELLKLLRYILELSEVEFDDCTLNGL--GDFNPSESDVVSELGKVETVTIRRLHIP 294
Query: 113 DNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
L S +Y + +K I + ++ + + Q + ++D+S + Y
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350
Score = 49.3 bits (118), Expect = 2e-07
Identities = 12/112 (10%), Positives = 42/112 (37%), Gaps = 6/112 (5%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
+ + +VL E F + + + L ++EF D + + + + S++ + +
Sbjct: 225 MKKLAFRGSVLTDESF--NELLKLLRYILELSEVEFDDCT----LNGLGDFNPSESDVVS 278
Query: 119 VPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ ++ +++ + S + ++ I + N ++ +
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 92.7 bits (230), Expect = 3e-22
Identities = 26/144 (18%), Positives = 60/144 (41%), Gaps = 5/144 (3%)
Query: 38 VECIDRNFYTIPEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
++ ++ Y E I L+ +++ ++ + L + ++ L L ++E +D
Sbjct: 34 IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF--RQVELLNLNDLQIEEID 91
Query: 97 DRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRY 154
AF + +L + N + +P +P L + L N + + F +TP +
Sbjct: 92 TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151
Query: 155 IDMSNCQIHTIYSEAFYGSDQIRR 178
+ MSN + I + F + ++
Sbjct: 152 LSMSNNNLERIEDDTFQATTSLQN 175
Score = 78.4 bits (193), Expect = 3e-17
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
VL L N+++ L + IF + L + LE ++D F+ T++ L LS N L
Sbjct: 126 TVLVLERNDLSSLPRGIF--HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ V L IP L N+++N + ++ + +D S+ I+ +
Sbjct: 184 THVD-LSLIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPVN 231
Score = 78.0 bits (192), Expect = 4e-17
Identities = 16/137 (11%), Positives = 49/137 (35%), Gaps = 2/137 (1%)
Query: 38 VECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97
V+ + I + D D+ + F + + N + + + + +
Sbjct: 9 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 68
Query: 98 RAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYI 155
++ L+L+D + + + Y ++ + + N I + + FQ+ P + +
Sbjct: 69 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128
Query: 156 DMSNCQIHTIYSEAFYG 172
+ + ++ F+
Sbjct: 129 VLERNDLSSLPRGIFHN 145
Score = 76.1 bits (187), Expect = 2e-16
Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 21/138 (15%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT------------ 104
L +S+NN+ ++ + F T++Q L L +L VD +
Sbjct: 150 TTLSMSNNNLERIEDDTF--QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 207
Query: 105 ----NMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNC 160
++ELD S N ++ V + L + L HN + + + PG+ +D+S
Sbjct: 208 AIPIAVEELDASHNSINVVRGPVN-VELTILKLQHNNLTDTAW--LLNYPGLVEVDLSYN 264
Query: 161 QIHTIYSEAFYGSDQIRR 178
++ I F ++ R
Sbjct: 265 ELEKIMYHPFVKMQRLER 282
Score = 76.1 bits (187), Expect = 2e-16
Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 6/127 (4%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
+ ++++ +L L NN+ L + ++ L +LE + F + +
Sbjct: 225 VVRGPVNVELTILKLQHNNLTDT--AWLLNY--PGLVEVDLSYNELEKIMYHPFVKMQRL 280
Query: 107 DELDLSDNLLSTVPSLI-YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ L +S+N L + IP LK ++L+HN + + Q + + + + I T+
Sbjct: 281 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ-FDRLENLYLDHNSIVTL 339
Query: 166 YSEAFYG 172
+
Sbjct: 340 KLSTHHT 346
Score = 73.0 bits (179), Expect = 2e-15
Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
++S N ++ L I ++ +L + V +T L L N L
Sbjct: 195 FHANVSYNLLSTLAIPIAVE-------ELDASHNSINVVRGPVNVELT---ILKLQHNNL 244
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ L+ P L ++L++N + +I + F + + +SN ++ +
Sbjct: 245 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 293
Score = 66.5 bits (162), Expect = 3e-13
Identities = 22/104 (21%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+DLS N + + F++M +++LY+ +L ++ + + + LDLS N L
Sbjct: 257 VEVDLSYNELEKIMYHPFVKM--QRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHL 313
Query: 117 STVP-SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN 159
V + L+++ L HN I + + ++ + +S+
Sbjct: 314 LHVERNQPQFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSH 354
Score = 52.6 bits (126), Expect = 2e-08
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 6/92 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VLDLS N++ +++ ++ LYL + + + L LS N
Sbjct: 304 KVLDLSHNHLLHVERNQP---QFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDW 357
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQS 148
+ + H Y +
Sbjct: 358 DCNSLRALFRNVARPAVDDADQHCKIDYQLEH 389
Score = 46.1 bits (109), Expect = 3e-06
Identities = 10/71 (14%), Positives = 31/71 (43%)
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
+D+ + I + K + ++ + ++ + S + +++++ QI I +
Sbjct: 33 HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT 92
Query: 168 EAFYGSDQIRR 178
AF + I++
Sbjct: 93 YAFAYAHTIQK 103
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 92.4 bits (230), Expect = 4e-22
Identities = 27/141 (19%), Positives = 67/141 (47%), Gaps = 6/141 (4%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C T +C++ NFY IP+ + T+ LDLS N + L F +Q L
Sbjct: 3 CVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSF--PELQVLD 58
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPIHQISSY 144
L +C+++ ++D A++ ++++ L L+ N + ++ + + L+ + + + ++
Sbjct: 59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118
Query: 145 SFQSTPGIRYIDMSNCQIHTI 165
++ +++++ I +
Sbjct: 119 PIGHLKTLKELNVAHNLIQSF 139
Score = 75.5 bits (186), Expect = 3e-16
Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFVDDRAFRGVTNMDELDLSDNL 115
LD+S + V IF G+++++ L + E F + N+ LDLS
Sbjct: 424 IYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
L + + + L+ +N++HN + ++ ++ ++ +D S I T +
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
Score = 72.0 bits (177), Expect = 4e-15
Identities = 19/126 (15%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 57 QVLDLSSNNINVL-QKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN- 114
+ LD +N+ + + +FL + N+ L + + F G+++++ L ++ N
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSL--RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 115 LLSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
+ L ++L+ + Q+S +F S ++ ++MS+ ++ + +
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516
Query: 173 SDQIRR 178
+ ++
Sbjct: 517 LNSLQV 522
Score = 71.6 bits (176), Expect = 6e-15
Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L+ N I L F + +++QKL + L +++ + + EL+++ NL+
Sbjct: 79 STLILTGNPIQSLALGAFSGL--SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 117 STVPSLIYI---PYLKSINLAHNPIHQISSYSFQSTPGIRY----IDMSNCQIHTIYSEA 169
+ Y L+ ++L+ N I I + + +D+S ++ I A
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 170 F 170
F
Sbjct: 197 F 197
Score = 68.9 bits (169), Expect = 5e-14
Identities = 19/106 (17%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VL ++ N+ + N+ L L +C+LE + AF ++++ L++S N
Sbjct: 448 EVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Query: 117 STVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPG-IRYIDMSN 159
++ + L+ ++ + N I Q P + +++++
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552
Score = 68.1 bits (167), Expect = 1e-13
Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 10/124 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L S I ++ + Q L L CK + ++ L + N
Sbjct: 285 SSFSLVSVTIERVKDFSYN----FGWQHLELVNCKFGQFPTLKLK---SLKRLTFTSNKG 337
Query: 117 STVPSLIYIPYLKSINLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSD 174
S + +P L+ ++L+ N + S S T ++Y+D+S + T+ S F G +
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLE 396
Query: 175 QIRR 178
Q+
Sbjct: 397 QLEH 400
Score = 62.0 bits (151), Expect = 1e-11
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LDLS + L F ++++Q L + +D ++ + ++ LD S N +
Sbjct: 473 TFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
Query: 117 STVP--SLIYIPY-LKSINLAHNPIH 139
T L + P L +NL N
Sbjct: 531 MTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 59.7 bits (145), Expect = 7e-11
Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 11/124 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD-DRAFRGVTNMDELDLSDNL 115
Q L N+ L+ + +++L + ++ F +TN++ LDLS N
Sbjct: 103 QKLVAVETNLASLENFPIGHL--KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 116 LSTVP--SLIYIPYLK----SINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH-TIYSE 168
+ ++ L + + S++L+ NP++ I +F+ + + + N +
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKT 219
Query: 169 AFYG 172
G
Sbjct: 220 CIQG 223
Score = 51.6 bits (124), Expect = 4e-08
Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 15/124 (12%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF-VDDRAFRGVTNMDELDLSDNLLS 117
LDLS N +N +Q F ++ + KL LR V +G+ ++ L
Sbjct: 182 LDLSLNPMNFIQPGAFKEI---RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238
Query: 118 TVPSLIYIPY-----LKSINLAHNPIHQISSY------SFQSTPGIRYIDMSNCQIHTIY 166
+L L ++ + + + Y F + + + I +
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298
Query: 167 SEAF 170
++
Sbjct: 299 DFSY 302
Score = 50.4 bits (121), Expect = 1e-07
Identities = 16/122 (13%), Positives = 39/122 (31%), Gaps = 10/122 (8%)
Query: 56 TQVLDLSSNNINVLQKEIFLQMG-ITNIQKLYLRKCKLEFVDD------RAFRGVTNMDE 108
+V L + + L + + +L ++D F +TN+
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286
Query: 109 LDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
L + V Y + + L + Q + +S ++ + ++ + +SE
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGGNAFSE 343
Query: 169 AF 170
Sbjct: 344 VD 345
Score = 47.7 bits (114), Expect = 8e-07
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
+ +P + K+++L+ NP+ + SYSF S P ++ +D+S C+I TI
Sbjct: 11 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69
Query: 168 EAFYG 172
A+
Sbjct: 70 GAYQS 74
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 91.6 bits (228), Expect = 4e-22
Identities = 26/144 (18%), Positives = 60/144 (41%), Gaps = 5/144 (3%)
Query: 38 VECIDRNFYTIPEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
++ ++ Y E I L+ +++ ++ + L + ++ L L ++E +D
Sbjct: 28 IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF--RQVELLNLNDLQIEEID 85
Query: 97 DRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRY 154
AF + +L + N + +P +P L + L N + + F +TP +
Sbjct: 86 TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145
Query: 155 IDMSNCQIHTIYSEAFYGSDQIRR 178
+ MSN + I + F + ++
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQN 169
Score = 79.3 bits (196), Expect = 1e-17
Identities = 16/137 (11%), Positives = 49/137 (35%), Gaps = 2/137 (1%)
Query: 38 VECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97
V+ + I + D D+ + F + + N + + + + +
Sbjct: 3 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 62
Query: 98 RAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYI 155
++ L+L+D + + + Y ++ + + N I + + FQ+ P + +
Sbjct: 63 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122
Query: 156 DMSNCQIHTIYSEAFYG 172
+ + ++ F+
Sbjct: 123 VLERNDLSSLPRGIFHN 139
Score = 77.8 bits (192), Expect = 4e-17
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
VL L N+++ L + IF + L + LE ++D F+ T++ L LS N L
Sbjct: 120 TVLVLERNDLSSLPRGIF--HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ V + IP L N+++N + + + +D S+ I+ +
Sbjct: 178 THVDLSL-IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVN 225
Score = 77.0 bits (190), Expect = 6e-17
Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 21/138 (15%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV------------- 103
L +S+NN+ ++ + F T++Q L L +L VD +
Sbjct: 144 TTLSMSNNNLERIEDDTF--QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 201
Query: 104 ---TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNC 160
++ELD S N ++ V + L + L HN + + + PG+ +D+S
Sbjct: 202 AIPIAVEELDASHNSINVVRGPVN-VELTILKLQHNNLTDTAW--LLNYPGLVEVDLSYN 258
Query: 161 QIHTIYSEAFYGSDQIRR 178
++ I F ++ R
Sbjct: 259 ELEKIMYHPFVKMQRLER 276
Score = 73.9 bits (182), Expect = 8e-16
Identities = 25/126 (19%), Positives = 54/126 (42%), Gaps = 12/126 (9%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
T+ I + + LD S N+INV++ + + L L+ L +
Sbjct: 200 TLAIPIAV--EELDASHNSINVVRGPVN-----VELTILKLQHNNLTDTA--WLLNYPGL 250
Query: 107 DELDLSDNLLSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT 164
E+DLS N L + + + L+ + +++N + ++ Y Q P ++ +D+S+ +
Sbjct: 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLH 309
Query: 165 IYSEAF 170
+
Sbjct: 310 VERNQP 315
Score = 72.4 bits (178), Expect = 3e-15
Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
++S N ++ L I ++ +L + V +T L L N L
Sbjct: 189 FHANVSYNLLSTLAIPIAVE-------ELDASHNSINVVRGPVNVELT---ILKLQHNNL 238
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ L+ P L ++L++N + +I + F + + +SN ++ +
Sbjct: 239 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 287
Score = 66.6 bits (163), Expect = 2e-13
Identities = 22/104 (21%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+DLS N + + F++M +++LY+ +L ++ + + + LDLS N L
Sbjct: 251 VEVDLSYNELEKIMYHPFVKM--QRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHL 307
Query: 117 STVP-SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN 159
V + L+++ L HN I + + ++ + +S+
Sbjct: 308 LHVERNQPQFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSH 348
Score = 53.1 bits (128), Expect = 1e-08
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 6/92 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VLDLS N++ +++ ++ LYL + + + L LS N
Sbjct: 298 KVLDLSHNHLLHVERNQP---QFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDW 351
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQS 148
+ + H Y +
Sbjct: 352 DCNSLRALFRNVARPAVDDADQHCKIDYQLEH 383
Score = 31.2 bits (71), Expect = 0.25
Identities = 5/64 (7%), Positives = 17/64 (26%), Gaps = 1/64 (1%)
Query: 116 LSTVPS-LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSD 174
+ S L Y +++ + + + + N + + +
Sbjct: 10 YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 69
Query: 175 QIRR 178
Q+
Sbjct: 70 QVEL 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 89.7 bits (223), Expect = 5e-22
Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 19 TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMG 78
CSC K +V+C + IP I DT+ LDL SN ++ L + F
Sbjct: 4 LCKKDGGVCSCN--NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAF--HR 59
Query: 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHN 136
+T ++ LYL KL+ + F+ + N++ L ++DN L +P + + L + L N
Sbjct: 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119
Query: 137 PIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ + F S + Y+ + ++ ++ F
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153
Score = 65.0 bits (159), Expect = 5e-13
Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 36 RTVECIDRNFYTIPEGI--DL-DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL 92
T+ D +P G+ L + L L N + L +F +T + L L +L
Sbjct: 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSLTKLTYLSLGYNEL 145
Query: 93 EFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTP 150
+ + F +T++ EL L +N L VP + + LK++ L +N + ++ +F S
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205
Query: 151 GIRYIDMSN 159
++ + +
Sbjct: 206 KLKMLQLQE 214
Score = 36.5 bits (85), Expect = 0.003
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
+ L L +N + + + F +T ++ L L +L+ V + AF + + L L +N
Sbjct: 160 KELRLYNNQLKRVPEGAF--DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 88.4 bits (219), Expect = 1e-20
Identities = 24/137 (17%), Positives = 58/137 (42%), Gaps = 4/137 (2%)
Query: 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF 94
+ V+ +P+ + T +L++S N I+ L L ++ ++ L + ++++
Sbjct: 2 EFLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDIL--SLSKLRILIISHNRIQY 59
Query: 95 VDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYS-FQSTPGIR 153
+D F+ ++ LDLS N L + LK ++L+ N + F + ++
Sbjct: 60 LDISVFKFNQELEYLDLSHNKLVKISC-HPTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118
Query: 154 YIDMSNCQIHTIYSEAF 170
++ +S +
Sbjct: 119 FLGLSTTHLEKSSVLPI 135
Score = 57.6 bits (139), Expect = 4e-10
Identities = 19/117 (16%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Query: 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD-DRAFRGVTNMDELDLSD 113
+ + L L N + L K + + ++Q+L + + + + + ++ L++S
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408
Query: 114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
N+L+ P +K ++L N I I + ++ +++++ Q+ ++ F
Sbjct: 409 NILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLE-ALQELNVASNQLKSVPDGIF 464
Score = 54.5 bits (131), Expect = 5e-09
Identities = 14/136 (10%), Positives = 40/136 (29%), Gaps = 10/136 (7%)
Query: 43 RNFYTIPEGIDLD---TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA 99
F I + + + + ++ ++ + L L
Sbjct: 286 DVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI--SPFLHLDFSNNLLTDTVFEN 343
Query: 100 FRGVTNMDELDLSDNLLSTVPSLIYI----PYLKSINLAHNPIHQISSY-SFQSTPGIRY 154
+T ++ L L N L + + + L+ ++++ N + T +
Sbjct: 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403
Query: 155 IDMSNCQIHTIYSEAF 170
++MS+ +
Sbjct: 404 LNMSSNILTDTIFRCL 419
Score = 49.9 bits (119), Expect = 1e-07
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 8/107 (7%)
Query: 56 TQVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT-NMDELDLSD 113
Q LD+S N+++ +K ++ L + L D FR + + LDL
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWT--KSLLSLNMSSNILT---DTIFRCLPPRIKVLDLHS 430
Query: 114 NLLSTVPSLIYI-PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN 159
N + ++P + L+ +N+A N + + F ++ I +
Sbjct: 431 NKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477
Score = 48.3 bits (115), Expect = 4e-07
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 48 IPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
I + +VLDL SN I + K++ + +Q+L + +L+ V D F +T++
Sbjct: 415 IFRCLPPRIKVLDLHSNKIKSIPKQVV---KLEALQELNVASNQLKSVPDGIFDRLTSLQ 471
Query: 108 ELDLSDN 114
++ L N
Sbjct: 472 KIWLHTN 478
Score = 44.9 bits (106), Expect = 7e-06
Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 5/117 (4%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKC---KLEFVDDRAFRGVTNMDELDLSDNL 115
+S+ + T+++ L + + F + +NM+ + + +
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311
Query: 116 LSTVPSLI--YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
V L I ++ ++N + + + + + Q+ + A
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE 368
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 87.1 bits (215), Expect = 1e-20
Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 9/121 (7%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQV--LDLSSNN-INVLQKEIFLQMGI 79
CP C G + C + + L + + + L+ +
Sbjct: 1 CPDACCPH---GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGL-- 55
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP-SLIYIPYLKSINLAHNPI 138
++ L + K L FV AF + L+LS N L ++ + L+ + L+ NP+
Sbjct: 56 GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115
Query: 139 H 139
H
Sbjct: 116 H 116
Score = 49.0 bits (116), Expect = 3e-07
Identities = 8/69 (11%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 111 LSDNLLSTVPSLIYIPYLKSINLAHNP-IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
D L ++ L L + + + + + + +R + + + + +A
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 170 FYGSDQIRR 178
F+ + ++ R
Sbjct: 76 FHFTPRLSR 84
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 87.9 bits (218), Expect = 2e-20
Identities = 23/118 (19%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+NI + F + ++++ L L + ++ R F + ++ L+L+ N +
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302
Query: 117 STVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
+ + + + L+ +NL++N + ++ S +F P + YID+ I I + F
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360
Score = 79.1 bits (195), Expect = 2e-17
Identities = 30/140 (21%), Positives = 63/140 (45%), Gaps = 14/140 (10%)
Query: 53 DLDTQVLDLSSNNINVLQKEIFLQ----------MGITNIQKLYLRKCKLEFVDDRAFRG 102
++ ++LD+S N V F + +I ++ D F G
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262
Query: 103 V--TNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMS 158
+ +++ LDLS + ++ S + + LK +NLA+N I++I+ +F ++ +++S
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322
Query: 159 NCQIHTIYSEAFYGSDQIRR 178
+ +YS FYG ++
Sbjct: 323 YNLLGELYSSNFYGLPKVAY 342
Score = 77.9 bits (192), Expect = 5e-17
Identities = 37/175 (21%), Positives = 62/175 (35%), Gaps = 35/175 (20%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGI------DLDT-----------------QVLDLSS 63
CS R N +P+ + L Q+L+L S
Sbjct: 2 CSFD----GRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGS 57
Query: 64 NNINV-LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP-- 120
+ + KE F + N++ L L K+ F+ AF+G+ ++ EL L LS
Sbjct: 58 QYTPLTIDKEAF--RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK 115
Query: 121 --SLIYIPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
+ L ++L+ N I + SF ++ ID S+ QI +
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170
Score = 75.2 bits (185), Expect = 4e-16
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
QVL+LS N + L F G+ + + L+K + + D+ F+ + + LDL DN L
Sbjct: 317 QVLNLSYNLLGELYSSNF--YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+T+ + P + I L+ N + + + + I +S ++ + F
Sbjct: 375 TTIHFI---PSIPDIFLSGNKLVTLPKINLTAN----LIHLSENRLENLDILYF 421
Score = 71.0 bits (174), Expect = 1e-14
Identities = 22/138 (15%), Positives = 53/138 (38%), Gaps = 9/138 (6%)
Query: 44 NFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA-FRG 102
N I+L ++ LS N + L FL + ++Q L L + +
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLL-RVPHLQILILNQNRFSSCSGDQTPSE 449
Query: 103 VTNMDELDLSDNLLSTVP-------SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYI 155
++++L L +N+L + +L+ + L HN ++ + F +R +
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509
Query: 156 DMSNCQIHTIYSEAFYGS 173
+++ ++ + +
Sbjct: 510 SLNSNRLTVLSHNDLPAN 527
Score = 69.8 bits (171), Expect = 3e-14
Identities = 20/111 (18%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQ---MGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113
+ L L N + + + G++++Q LYL L + F +T + L L+
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513
Query: 114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT 164
N L+ + L+ ++++ N + + F S + +D+++ +
Sbjct: 514 NRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVS---LSVLDITHNKFIC 561
Score = 67.1 bits (164), Expect = 2e-13
Identities = 22/144 (15%), Positives = 48/144 (33%), Gaps = 22/144 (15%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN------MDELD 110
+ +D SSN I ++ + + + L L + N ++ LD
Sbjct: 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210
Query: 111 LSDNLLSTVP--------------SLIYIPYLKSINLAHNPIHQISSYSFQS--TPGIRY 154
+S N + SLI ++ + I +F +R+
Sbjct: 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270
Query: 155 IDMSNCQIHTIYSEAFYGSDQIRR 178
+D+S+ + ++ S F ++
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKV 294
Score = 61.0 bits (148), Expect = 3e-11
Identities = 26/143 (18%), Positives = 57/143 (39%), Gaps = 22/143 (15%)
Query: 57 QVLDLSSNNINVLQ-----KEIFL-QMGITNIQK-------LYLRKCKLEFVDDRAF-RG 102
Q LDL N + + +IFL + + K ++L + +LE +D F
Sbjct: 365 QTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR 424
Query: 103 VTNMDELDLSDNLLSTVPS---LIYIPYLKSINLAHNPIH-----QISSYSFQSTPGIRY 154
V ++ L L+ N S+ P L+ + L N + ++ F+ ++
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484
Query: 155 IDMSNCQIHTIYSEAFYGSDQIR 177
+ +++ ++++ F +R
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALR 507
Score = 56.7 bits (137), Expect = 8e-10
Identities = 19/138 (13%), Positives = 40/138 (28%), Gaps = 23/138 (16%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD--ELDLSDN 114
LDLS N I L + +++ + ++ V + + L+ N
Sbjct: 126 TRLDLSKNQIRSLYLHPSFG-KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184
Query: 115 LLSTVPSLIYI--------PYLKSINLAHNPIHQISSYSFQST------------PGIRY 154
L + S+ + L+ ++++ N + +F + I
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244
Query: 155 IDMSNCQIHTIYSEAFYG 172
I F G
Sbjct: 245 AGFGFHNIKDPDQNTFAG 262
Score = 46.3 bits (110), Expect = 3e-06
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 109 LDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMS-NCQIHTIYS 167
L+ VP ++ + + L+ N I +++ SF ++ +++ TI
Sbjct: 9 AFYRFCNLTQVPQVL--NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK 66
Query: 168 EAFYGSDQIRR 178
EAF +R
Sbjct: 67 EAFRNLPNLRI 77
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 85.3 bits (211), Expect = 1e-19
Identities = 30/167 (17%), Positives = 70/167 (41%), Gaps = 9/167 (5%)
Query: 5 FILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSN 64
+ S + LA + + P S + + V+ +RN +P+ + T+ L LS N
Sbjct: 8 IVGSFHFVCALALIVGSMTP--FSNE---LESMVDYSNRNLTHVPKDLPPRTKALSLSQN 62
Query: 65 NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY 124
+I+ L+ ++ ++ L L ++ +D F +++ LD+S N L +
Sbjct: 63 SISELRMPDIS--FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCP- 119
Query: 125 IPYLKSINLAHNPIHQISSYS-FQSTPGIRYIDMSNCQIHTIYSEAF 170
+ L+ ++L+ N + F + + ++ +S + +
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166
Score = 53.3 bits (128), Expect = 1e-08
Identities = 13/127 (10%), Positives = 41/127 (32%), Gaps = 10/127 (7%)
Query: 45 FYTIPEGI---DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101
F E + + + LS ++ + ++ L + +
Sbjct: 317 FLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP--SSFTFLNFTQNVFTDSVFQGCS 374
Query: 102 GVTNMDELDLSDNLLSTVPSLIYIP-YLKSINLAHNPIHQISSYSF----QSTPGIRYID 156
+ + L L N L + + + S+ ++ ++S+++ I ++
Sbjct: 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434
Query: 157 MSNCQIH 163
+S+ +
Sbjct: 435 LSSNMLT 441
Score = 50.6 bits (121), Expect = 7e-08
Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 13/128 (10%)
Query: 45 FYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104
+ + L+ + N + + +Q L L++ L+ A
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL--KRLQTLILQRNGLKNFFKVALM-TK 400
Query: 105 NMDELDLSDNLLSTVPSLIY------IPYLKSINLAHNPIHQISSYSFQS-TPGIRYIDM 157
NM L+ D L+++ S Y + +NL+ N ++ F+ P ++ +D+
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN---MLTGSVFRCLPPKVKVLDL 457
Query: 158 SNCQIHTI 165
N +I +I
Sbjct: 458 HNNRIMSI 465
Score = 44.5 bits (105), Expect = 9e-06
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
VL+LSSN L +F + ++ L L ++ + + + EL+++ N
Sbjct: 430 ILVLNLSSNM---LTGSVFRCLP-PKVKVLDLHNNRIMSIPK-DVTHLQALQELNVASNQ 484
Query: 116 LSTVP--SLIYIPYLKSINLAHNP 137
L +VP + L+ I L NP
Sbjct: 485 LKSVPDGVFDRLTSLQYIWLHDNP 508
Score = 41.0 bits (96), Expect = 1e-04
Identities = 8/116 (6%), Positives = 35/116 (30%), Gaps = 2/116 (1%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ +L+ ++ + + + ++ +++ F + + M+ LS +
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341
Query: 117 STVPSLI--YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ + +N N + ++ + + + + A
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 82.4 bits (204), Expect = 1e-19
Identities = 26/182 (14%), Positives = 57/182 (31%), Gaps = 33/182 (18%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM--- 77
C C + ++ IP + TQ L L ++ + F +
Sbjct: 2 GCSSPPCEC---HQEEDFRVTCKDIQRIP-SLPPSTQTLKLIETHLRTIPSHAFSNLPNI 57
Query: 78 --------------------GITNIQKLYLRKCK-LEFVDDRAFRGVTNMDELDLSDNLL 116
++ + + +R + L ++D A + + + L + + L
Sbjct: 58 SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL 117
Query: 117 STVPSLIYI---PYLKSINLAHNP-IHQISSYSFQS-TPGIRYIDMSNCQIHTIYSEAFY 171
P L + + + NP + I +FQ + + N ++ AF
Sbjct: 118 KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177
Query: 172 GS 173
G+
Sbjct: 178 GT 179
Score = 57.3 bits (139), Expect = 2e-10
Identities = 19/121 (15%), Positives = 43/121 (35%), Gaps = 6/121 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVTNM-DELDLSDN 114
+ L + + + + + L + + + AF+G+ N L L +N
Sbjct: 108 KFLGIFNTGLKMFPDLTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166
Query: 115 LLSTVPSLIYI-PYLKSINLAHNP-IHQISSYSFQSTP-GIRYIDMSNCQIHTIYSEAFY 171
++V + L ++ L N + I +F G +D+S + + S+
Sbjct: 167 GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE 226
Query: 172 G 172
Sbjct: 227 H 227
Score = 53.1 bits (128), Expect = 7e-09
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRAFRG-VTNMDELDLSD 113
T L L +N +Q F T + +YL K K L +D AF G + LD+S
Sbjct: 158 TLTLKLYNNGFTSVQGYAFNG---TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214
Query: 114 NLLSTVPS--LIYIPYLKSINL 133
++ +PS L ++ L + N
Sbjct: 215 TSVTALPSKGLEHLKELIARNT 236
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 79.3 bits (196), Expect = 6e-18
Identities = 18/114 (15%), Positives = 46/114 (40%), Gaps = 7/114 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
++ ++ +++ + N+++L L L + T ++ L+LS N+L
Sbjct: 13 KIEKVTDSSLKQALASLR--QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
L + L++++L +N + ++ P I + +N I +
Sbjct: 71 YETLDLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSRG 119
Score = 74.6 bits (184), Expect = 3e-16
Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 13/135 (9%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
+ G + + L ++NNI+ + + +YL K+ + D + +
Sbjct: 94 ELLVGPSI--ETLHAANNNISRVSCSRG-----QGKKNIYLANNKITMLRDLDEGCRSRV 146
Query: 107 DELDLSDNLLSTVPSLIYI---PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
LDL N + TV L+ +NL +N I+ + ++ +D+S+ ++
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA 204
Query: 164 TIYSEAFYGSDQIRR 178
+ F + +
Sbjct: 205 FM-GPEFQSAAGVTW 218
Score = 67.7 bits (166), Expect = 8e-14
Identities = 21/115 (18%), Positives = 45/115 (39%), Gaps = 15/115 (13%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L+L N I ++ ++ ++ L L KL F+ F+ + + L +N L
Sbjct: 172 EHLNLQYNFIYDVKGQVVF----AKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKL 226
Query: 117 STVP-SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ +L + L+ +L N H + +R N ++ T+ +
Sbjct: 227 VLIEKALRFSQNLEHFDLRGNGFHCGT---------LRDFFSKNQRVQTVAKQTV 272
Score = 59.2 bits (144), Expect = 8e-11
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 71 KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYL 128
EI + + L+ + N+ ELDLS N LS + L L
Sbjct: 3 HEIKQNG--NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ +NL+ N +++ +S +R +D++N + +
Sbjct: 61 ELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQEL 95
Score = 37.7 bits (88), Expect = 0.002
Identities = 7/45 (15%), Positives = 17/45 (37%)
Query: 128 LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
K + + + Q + QS ++ +D+S + I +
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP 56
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 78.6 bits (194), Expect = 2e-17
Identities = 31/118 (26%), Positives = 65/118 (55%), Gaps = 4/118 (3%)
Query: 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
+ DLS + I L K +F T++++L L + ++ +DD AF G+T++ +L+LS N
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHF--TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333
Query: 115 LLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
L ++ S ++ + L+ ++L++N I + SF P ++ + + Q+ ++ F
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391
Score = 78.2 bits (193), Expect = 3e-17
Identities = 29/153 (18%), Positives = 61/153 (39%), Gaps = 12/153 (7%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CS CI+R + +PE + +DLS N+I L + F + ++
Sbjct: 4 GTSECSV----IGYNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFS--RLQDL 56
Query: 83 QKLYLRKCKLEF-VDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIH 139
Q L + + + + FRG++++ L L N + + + + L+ + L +
Sbjct: 57 QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD 116
Query: 140 --QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+S F+ + + + + I I +F
Sbjct: 117 GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Score = 67.5 bits (165), Expect = 1e-13
Identities = 22/115 (19%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 60 DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
N F + + ++ L K K+ + F T++++L L+ N ++ +
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314
Query: 120 PSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
+ + +L +NL+ N + I S F++ + +D+S I + ++F G
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369
Score = 62.5 bits (152), Expect = 8e-12
Identities = 25/137 (18%), Positives = 51/137 (37%), Gaps = 15/137 (10%)
Query: 57 QVLDLSSNNINVLQKEIF-----------LQMGITNIQKLYLRKCKLEFVDDRAFRG--V 103
LDLS N + F L + + + D+ F+G
Sbjct: 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274
Query: 104 TNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQ 161
+ + DLS + + + + + L+ + LA N I++I +F + +++S
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334
Query: 162 IHTIYSEAFYGSDQIRR 178
+ +I S F D++
Sbjct: 335 LGSIDSRMFENLDKLEV 351
Score = 61.7 bits (150), Expect = 1e-11
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L+LS N + + +F + ++ L L + + D++F G+ N+ EL L N L
Sbjct: 326 LKLNLSQNFLGSIDSRMF--ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383
Query: 117 STVPSLIY--IPYLKSINLAHNPIH 139
+VP I+ + L+ I L NP
Sbjct: 384 KSVPDGIFDRLTSLQKIWLHTNPWD 408
Score = 60.9 bits (148), Expect = 3e-11
Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 13/115 (11%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE--FVDDRAFRGVTNMDELDLSDN 114
+L L N L+ F G+ N++ L L +C L+ + F+ +T+++ L L DN
Sbjct: 82 IILKLDYNQFLQLETGAF--NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139
Query: 115 LLSTVP------SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
+ + ++ ++L N + I + G + + I
Sbjct: 140 NIKKIQPASFFLNM---RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191
Score = 52.1 bits (125), Expect = 3e-08
Identities = 25/165 (15%), Positives = 49/165 (29%), Gaps = 49/165 (29%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYL--------RKCKLEFVDDRAFRGVTNMDE 108
VLDL+ N + + +E L + L L + L + T++
Sbjct: 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT 216
Query: 109 LDLSDNLLSTVPSLIY-----------------------------------------IPY 127
LDLS N + +
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276
Query: 128 LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
+K+ +L+ + I + F + + ++ +I+ I AF+G
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 78.4 bits (193), Expect = 3e-17
Identities = 25/123 (20%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG-VTNMDELDLSDNL 115
+ + L++N I +L+ + +Q L L+ +++ V+ ++ L+L N
Sbjct: 123 KNIYLANNKITMLRDLDEGCR--SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180
Query: 116 LSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQ 175
+ V + LK+++L+ N + + FQS G+ +I + N ++ I +A S
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQN 238
Query: 176 IRR 178
+
Sbjct: 239 LEH 241
Score = 78.0 bits (192), Expect = 4e-17
Identities = 19/117 (16%), Positives = 47/117 (40%), Gaps = 7/117 (5%)
Query: 56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
++ ++ +++ + N+++L L L + T ++ L+LS N+
Sbjct: 12 YKIEKVTDSSLKQALASLR--QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 116 LSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
L L + L++++L +N + ++ P I + +N I + G
Sbjct: 70 LYETLDLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSRGQG 121
Score = 73.3 bits (180), Expect = 2e-15
Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 13/135 (9%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
+ G + + L ++NNI+ + + +YL K+ + D + +
Sbjct: 94 ELLVGPSI--ETLHAANNNISRVSCSRG-----QGKKNIYLANNKITMLRDLDEGCRSRV 146
Query: 107 DELDLSDNLLSTVPSLIYI---PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
LDL N + TV L+ +NL +N I+ + ++ +D+S+ ++
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA 204
Query: 164 TIYSEAFYGSDQIRR 178
+ F + +
Sbjct: 205 FM-GPEFQSAAGVTW 218
Score = 60.2 bits (146), Expect = 5e-11
Identities = 18/126 (14%), Positives = 41/126 (32%), Gaps = 6/126 (4%)
Query: 47 TIPEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN 105
+ + + LDLSSN + + E + + LR KL ++ A R N
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLAFMGPEF---QSAAGVTWISLRNNKLVLIEK-ALRFSQN 238
Query: 106 MDELDLSDNLLSTVPSLIYIPYLKSI-NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT 164
++ DL N + + + +A + +++ + +
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298
Query: 165 IYSEAF 170
+ +
Sbjct: 299 LPAPFA 304
Score = 58.7 bits (142), Expect = 2e-10
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 71 KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYL 128
EI + + L+ + N+ ELDLS N LS + L L
Sbjct: 3 HEIKQNG--NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ +NL+ N +++ +S +R +D++N + +
Sbjct: 61 ELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQEL 95
Score = 40.6 bits (95), Expect = 2e-04
Identities = 12/157 (7%), Positives = 39/157 (24%), Gaps = 12/157 (7%)
Query: 8 SVFLLTLLASVTQASCPLGCSC--KWKAGKRTVECIDRNFYTIPEGIDLDT----QVLDL 61
++ L C + + + V+ + + G + + +
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291
Query: 62 SSNNINVLQKEIF---LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
+ L + + L + + E ++ E+D T
Sbjct: 292 GAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQ-ARQREIDALKEQYRT 350
Query: 119 VPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIR 153
V + ++ + + S ++ +
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387
Score = 38.7 bits (90), Expect = 9e-04
Identities = 12/99 (12%), Positives = 27/99 (27%), Gaps = 5/99 (5%)
Query: 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113
+ +L + L+ E Q +++ K + V D+ L+
Sbjct: 313 KEHALLSGQGSETERLECERENQ---ARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369
Query: 114 NLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTP 150
L S L ++ + + +P
Sbjct: 370 KALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSP 408
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 77.6 bits (191), Expect = 6e-17
Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 10/129 (7%)
Query: 47 TIPEGI-DLDT-QVLDLSSNNINVLQKEIFLQMGI-------TNIQKLYLRKCKL-EFVD 96
+P+ + DL Q L+++ N + + IQ Y+ L EF
Sbjct: 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565
Query: 97 DRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYID 156
+ + + + LD N + + + L + L +N I +I T + +
Sbjct: 566 SASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLG 625
Query: 157 MSNCQIHTI 165
S+ ++ I
Sbjct: 626 FSHNKLKYI 634
Score = 76.1 bits (187), Expect = 2e-16
Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 17/144 (11%)
Query: 44 NFYTIPEGIDLDT----QVLDLSSNNINVLQKEIFLQMGI---TNIQKLYLRKCKLEFVD 96
IP + + +D S N I + I M N + L +++
Sbjct: 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689
Query: 97 DRAFRGVTNMDELDLSDNLLSTVP---------SLIYIPYLKSINLAHNPIHQIS-SYSF 146
F + + + LS+NL++++P + L +I+L N + +S +
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749
Query: 147 QSTPGIRYIDMSNCQIHTIYSEAF 170
+ P + +D+S + ++
Sbjct: 750 TTLPYLSNMDVSYNCFSSFPTQPL 773
Score = 75.7 bits (186), Expect = 3e-16
Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 10/126 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFVDDRAFRGVTNMDELDLSDNL 115
L L N I + ++ ++ L KL + + V M +D S N
Sbjct: 598 TDLKLDYNQIEEIPEDFCAFT--DQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655
Query: 116 LSTVPSLIYIPY-------LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
+ + I ++ L++N I + + F + I I +SN + +I
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715
Query: 169 AFYGSD 174
+ D
Sbjct: 716 SLKPKD 721
Score = 70.3 bits (172), Expect = 2e-14
Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 16/139 (11%)
Query: 44 NFYTIPEGIDLDT----QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA 99
N P L +LD N + L E F + L L ++E + +
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTN--VKLTDLKLDYNQIEEIPEDF 614
Query: 100 FRGVTNMDELDLSDNLLSTVPSLIYI---PYLKSINLAHNPIHQISSYSFQSTPGIR--- 153
++ L S N L +P++ + S++ ++N I S +
Sbjct: 615 CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674
Query: 154 --YIDMSNCQIHTIYSEAF 170
+ +S +I +E F
Sbjct: 675 ASTVTLSYNEIQKFPTELF 693
Score = 58.7 bits (142), Expect = 2e-10
Identities = 16/129 (12%), Positives = 40/129 (31%), Gaps = 14/129 (10%)
Query: 47 TIPEGIDLDT----QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD----- 97
++ + T +D+S N + + + ++ +R + +
Sbjct: 742 SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL---NSSQLKAFGIRHQRDAEGNRILRQW 798
Query: 98 -RAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYID 156
++ +L + N + V + P L +++A NP I S
Sbjct: 799 PTGITTCPSLIQLQIGSNDIRKVDEKL-TPQLYILDIADNPNISIDVTSVCPYIEAGMYV 857
Query: 157 MSNCQIHTI 165
+ + I
Sbjct: 858 LLYDKTQDI 866
Score = 53.7 bits (129), Expect = 9e-09
Identities = 16/116 (13%), Positives = 40/116 (34%), Gaps = 9/116 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VL +++ V + + ++ + + ++ + ++ DL + +
Sbjct: 350 KVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY-KKMFLDYDQRLNLSDLLQDAI 408
Query: 117 STVPSLIYIPYLKSINLAH-------NPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ P + I I+L N I IS + Q ++ I +N
Sbjct: 409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK-AIQRLTKLQIIYFANSPFTYD 463
Score = 44.1 bits (104), Expect = 2e-05
Identities = 13/122 (10%), Positives = 45/122 (36%), Gaps = 13/122 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD------DRAFRGVTNMDELD 110
+ DL + IN + ++ ++ L+ ++ + +A + +T + +
Sbjct: 399 NLSDLLQDAINRNPEMKPIK----KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIY 454
Query: 111 LSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+++ + + + N + ++ S+ + + +++ NC T +
Sbjct: 455 FANSPFTYDNIAV---DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511
Query: 171 YG 172
Y
Sbjct: 512 YD 513
Score = 42.6 bits (100), Expect = 5e-05
Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 6/116 (5%)
Query: 50 EGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDEL 109
I L + +N I + K I +T +Q +Y + + N D
Sbjct: 421 SRISLKDTQIGNLTNRITFISKAIQ---RLTKLQIIYFANSPFTYDNIAVDWEDANSDYA 477
Query: 110 DLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+N + +L L + L + P P ++ ++++ + +
Sbjct: 478 KQYENEELSWSNL---KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA 530
Score = 35.2 bits (81), Expect = 0.011
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIH 139
+ L L + A +T + L + + L L + +++ H
Sbjct: 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL-TPDMSEERKH 381
Query: 140 QISSYSFQST 149
+I + +
Sbjct: 382 RIRMHYKKMF 391
Score = 31.8 bits (72), Expect = 0.17
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 2/70 (2%)
Query: 108 ELDLSDN-LLSTVPSLI-YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
L L+ VP I + LK ++ + + +I
Sbjct: 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMH 386
Query: 166 YSEAFYGSDQ 175
Y + F DQ
Sbjct: 387 YKKMFLDYDQ 396
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 72.0 bits (177), Expect = 1e-15
Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 4/150 (2%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
C C GK+ V+C ++ ++P GI DT+ LDL S + L F G+T +
Sbjct: 4 CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATF--RGLTKL 61
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQ 140
L L +L+ + F +T + L L++N L+++P ++ + L + L N +
Sbjct: 62 TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS 121
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ S F ++ + ++ Q+ +I + AF
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151
Score = 47.0 bits (112), Expect = 1e-06
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 37 TVECIDRNFYTIPEGI-DLDT--QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE 93
T+ + ++P G+ D T L L N + L +F +T +++L L +L+
Sbjct: 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF--DRLTKLKELRLNTNQLQ 144
Query: 94 FVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+ AF +TN+ L LS N L +VP + + L++I L N
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 71.3 bits (175), Expect = 4e-15
Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 31/150 (20%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
C + V C RN +P + DT +L LS N +
Sbjct: 4 CEVSKVAS----HLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLA---------- 49
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQIS 142
T + +L+L L+ + +P L +++L+HN + +
Sbjct: 50 ----------------TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP 93
Query: 143 SYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
Q+ P + +D+S ++ ++ A G
Sbjct: 94 L-LGQTLPALTVLDVSFNRLTSLPLGALRG 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 69.3 bits (170), Expect = 5e-15
Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 35/143 (24%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKE-IFLQM---- 77
CP C C+ TV+C R IP I L T L L+ N + + + +F ++
Sbjct: 2 CPAMCHCE----GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLV 57
Query: 78 ------------------GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
G ++IQ+L L + K++ + ++ F G+ + L+L DN +S V
Sbjct: 58 KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117
Query: 120 P-----SLIYIPYLKSINLAHNP 137
L L S+NLA NP
Sbjct: 118 MPGSFEHL---NSLTSLNLASNP 137
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 67.4 bits (165), Expect = 2e-13
Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 19/146 (13%)
Query: 44 NFYTIPEGIDLDT----QVLDLSSNNINVLQKEIFLQM-----GITNIQKLYLRKCKLEF 94
IP D + +D S N I + + F + N+ + L ++
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447
Query: 95 VDDRAFRGVTNMDELDLSDNLLSTVP---------SLIYIPYLKSINLAHNPIHQI-SSY 144
F + + ++L N+L+ +P + L SI+L N + ++ +
Sbjct: 448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507
Query: 145 SFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ P + ID+S ++
Sbjct: 508 RATTLPYLVGIDLSYNSFSKFPTQPL 533
Score = 67.0 bits (164), Expect = 3e-13
Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 13/124 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+L+ N + + L L ++ + ++ L + N L
Sbjct: 333 GMLECLYNQLEGKLPAFG---SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389
Query: 117 STVPSLIYI---PYLKSINLAHNPIHQISSYSFQSTPG-------IRYIDMSNCQIHTIY 166
+P++ + +I+ ++N I + +F + I++SN QI
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449
Query: 167 SEAF 170
E F
Sbjct: 450 KELF 453
Score = 64.3 bits (157), Expect = 2e-12
Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 12/126 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF-RGVTNMDELDLSDNL 115
L+L+ N I + ++ L KL+++ + + V+ M +D S N
Sbjct: 356 ASLNLAYNQITEIPANFCGFT--EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE 413
Query: 116 LSTVP--SLIYIPY-------LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
+ +V + + + SINL++N I + F + + I++ + I
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473
Query: 167 SEAFYG 172
+
Sbjct: 474 KNSLKD 479
Score = 62.4 bits (152), Expect = 9e-12
Identities = 21/117 (17%), Positives = 48/117 (41%), Gaps = 8/117 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGIT------NIQKLYLRKCKL-EFVDDRAFRGVTNMDEL 109
Q+++++ N ++ + IQ +Y+ L F + + + + + L
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335
Query: 110 DLSDNLLSTV-PSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ N L P+ L S+NLA+N I +I + T + + ++ ++ I
Sbjct: 336 ECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI 392
Score = 58.1 bits (141), Expect = 2e-10
Identities = 19/122 (15%), Positives = 37/122 (30%), Gaps = 13/122 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQM-----GITNIQKLYLRKCKL-EFVDDRAFRGVTNMDELD 110
++L N + + K + + LR KL + DD + + +D
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519
Query: 111 LSDNLLSTVP-------SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
LS N S P +L + N + P + + + + I
Sbjct: 520 LSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579
Query: 164 TI 165
+
Sbjct: 580 KV 581
Score = 48.1 bits (115), Expect = 5e-07
Identities = 19/150 (12%), Positives = 51/150 (34%), Gaps = 34/150 (22%)
Query: 47 TIPEGIDLDT--QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE----------- 93
+I + + + SNNI + K + +T +++ Y+
Sbjct: 174 SIKKSSRITLKDTQIGQLSNNITFVSKAVM---RLTKLRQFYMGNSPFVAENICEAWENE 230
Query: 94 --------FVDDRAFRGVTNMDELDLSD-NLLSTVPSLIY-IPYLKSINLAHNPIHQISS 143
+D + + ++ ++++ + L+ +P+ + +P ++ IN+A N
Sbjct: 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290
Query: 144 Y--------SFQSTPGIRYIDMSNCQIHTI 165
I+ I + + T
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTF 320
Score = 45.8 bits (109), Expect = 4e-06
Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 9/113 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VL L S+ V ++ + GI+ ++ D DL + +
Sbjct: 108 EVLALGSHGEKVNERLFGPK-GISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166
Query: 117 STVPSLIYIP-------YLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
++ P I I N I +S + +R M N
Sbjct: 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNSPF 218
Score = 44.6 bits (106), Expect = 8e-06
Identities = 15/140 (10%), Positives = 37/140 (26%), Gaps = 36/140 (25%)
Query: 44 NFYTIPEGIDLDT----QVLDLSSNNINVLQKEIF----LQM------------------ 77
+ + T +DLS N+ + + L+
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558
Query: 78 -----GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKS 130
++ +L + + V+++ N+ LD+ DN ++ +
Sbjct: 559 PEGITLCPSLTQLQIGSNDIRKVNEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAGM 615
Query: 131 INLAHNPIHQISSYSFQSTP 150
L ++ I
Sbjct: 616 YMLFYDKTQDIRGCDALDIK 635
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 64.2 bits (157), Expect = 3e-13
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP CSC TV+C ++ ++P GI TQVL L N I L+ +F ++ T +
Sbjct: 3 CPSQCSC----SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRL--TQL 56
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+L L +L + F +T + +L L+DN L ++P + + L I L +NP
Sbjct: 57 TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 63.8 bits (156), Expect = 3e-13
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP CSC + V C + ++P GI D Q L L++N I L+ +F + N+
Sbjct: 6 CPSQCSC----DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHL--VNL 59
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
Q+LY KL + F +T + +LDL+DN L ++P + + L I L +NP
Sbjct: 60 QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 63.1 bits (154), Expect = 7e-13
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP CSC + C + ++P GI L+L SN + L +F ++ T +
Sbjct: 1 CPSRCSC----SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKL--TQL 54
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS 121
KL L + +++ + D F +T + L L +N L ++P+
Sbjct: 55 TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN 93
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 62.8 bits (153), Expect = 2e-12
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP CSC TV+C + ++P GI + Q+L L N I L+ +F + N+
Sbjct: 13 CPSQCSC----SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVF--DSLINL 66
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS 121
++LYL +L + F +T + LDL N L+ +PS
Sbjct: 67 KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS 105
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 60.8 bits (148), Expect = 6e-12
Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 33/143 (23%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVL--------------------- 59
+ CP C+C V C ++ +P+GI D L
Sbjct: 2 SRCPTECTCLDT----VVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLT 57
Query: 60 --DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
DLS+N I+ L + F M T + L L +L + R F G+ ++ L L N +S
Sbjct: 58 LIDLSNNRISTLSNQSFSNM--TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 118 TVPSLIYIPYLKS---INLAHNP 137
VP + L + + + NP
Sbjct: 116 VVPEGAFND-LSALSHLAIGANP 137
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 62.7 bits (153), Expect = 6e-12
Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L ++N I+ + L +TN+ +L L +L+ + +TN+ +LDL++N +
Sbjct: 202 ESLIATNNQISDI---TPLG-ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI 255
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
S + L + L + L N I IS + ++++ Q+ I
Sbjct: 256 SNLAPLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI 302
Score = 60.7 bits (148), Expect = 3e-11
Identities = 17/114 (14%), Positives = 40/114 (35%), Gaps = 8/114 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L+L+ N + + + N+ L L + + +T + L +N +
Sbjct: 290 TNLELNENQLEDI--SPISNL--KNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKV 343
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
S V SL + + ++ HN I ++ + I + +++
Sbjct: 344 SDVSSLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQAWTNAPVNYK 395
Score = 59.2 bits (144), Expect = 9e-11
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LDL++N I+ L L G+T + +L L ++ + G+T + L+L++N L
Sbjct: 246 TDLDLANNQISNL---APLS-GLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQL 299
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + + L + L N I IS S ++ + N ++ +
Sbjct: 300 EDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKVSDV 346
Score = 58.8 bits (143), Expect = 1e-10
Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L N+ + Q + + L + ++ +D + N+ +++ S+N L
Sbjct: 27 MKTVLGKTNV----TDTVSQTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQL 80
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + L + L I + +N I I+ + + + + N QI I
Sbjct: 81 TDITPLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDI 127
Score = 58.1 bits (141), Expect = 3e-10
Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 21/126 (16%)
Query: 57 QVLDLSSNNINVLQ--------KEIFLQMGI---------TNIQKLYLRKCKLEFVDDRA 99
L+LSSN I+ + +++ + T +++L + K+ +
Sbjct: 137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS--V 194
Query: 100 FRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN 159
+TN++ L ++N +S + L + L ++L N + I + S + +D++N
Sbjct: 195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLAN 252
Query: 160 CQIHTI 165
QI +
Sbjct: 253 NQISNL 258
Score = 56.9 bits (138), Expect = 5e-10
Identities = 16/109 (14%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L I + ++ + N+ ++ +L D + +T + ++ +++N +
Sbjct: 49 TTLQADRLGIKSID---GVE-YLNNLTQINFSNNQLT--DITPLKNLTKLVDILMNNNQI 102
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + L + L + L +N I I ++ + +++S+ I I
Sbjct: 103 ADITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDI 149
Score = 55.4 bits (134), Expect = 2e-09
Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 10/128 (7%)
Query: 40 CIDRNFYTIPEGIDLDT--QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97
DR +G++ ++ S+N + + L+ +T + + + ++ D
Sbjct: 52 QADRLGIKSIDGVEYLNNLTQINFSNNQLTDI---TPLK-NLTKLVDILMNNNQIA--DI 105
Query: 98 RAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDM 157
+TN+ L L +N ++ + L + L + L+ N I IS + ++ +
Sbjct: 106 TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSF 163
Query: 158 SNCQIHTI 165
N
Sbjct: 164 GNQVTDLK 171
Score = 54.2 bits (131), Expect = 5e-09
Identities = 21/109 (19%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ +++N I + L +TN+ L L ++ +D + +TN++ L+LS N +
Sbjct: 93 VDILMNNNQIADI---TPLA-NLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTI 146
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
S + +L + L+ ++ N + + + + +D+S+ ++ I
Sbjct: 147 SDISALSGLTSLQQLSF-GNQVTDLK--PLANLTTLERLDISSNKVSDI 192
Score = 53.4 bits (129), Expect = 8e-09
Identities = 17/109 (15%), Positives = 37/109 (33%), Gaps = 6/109 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L NNI+ + + +T +Q+L+ K+ V + +TN++ L N +
Sbjct: 312 TYLTLYFNNISDI---SPVS-SLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQI 365
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
S + L + + + L + + +
Sbjct: 366 SDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAP 414
Score = 53.4 bits (129), Expect = 1e-08
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 8/105 (7%)
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
IN +IF + K L K + D + + + L + ++
Sbjct: 9 TQDTPIN----QIFTDTALAEKMKTVLGKTNVT--DTVSQTDLDQVTTLQADRLGIKSID 62
Query: 121 SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ Y+ L IN ++N + I+ ++ + I M+N QI I
Sbjct: 63 GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI 105
Score = 31.1 bits (71), Expect = 0.25
Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 4/68 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L+ + I N ++ + + E D++ NL
Sbjct: 378 TQLGLNDQAWTNAPVNYKANVSIPNT----VKNVTGALIAPATISDGGSYTEPDITWNLP 433
Query: 117 STVPSLIY 124
S + Y
Sbjct: 434 SYTNEVSY 441
Score = 29.9 bits (68), Expect = 0.49
Identities = 5/58 (8%), Positives = 14/58 (24%), Gaps = 2/58 (3%)
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
D ++ + + + L + S + + I +I
Sbjct: 6 ATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI 61
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 61.2 bits (149), Expect = 6e-12
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP CSC TVEC + ++P GI T LDL +N++ L +F +T++
Sbjct: 1 CPSRCSC----SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVF--DELTSL 54
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS 121
+LYL KL+ + + F +T++ L+LS N L ++P+
Sbjct: 55 TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN 93
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 61.4 bits (150), Expect = 1e-11
Identities = 17/109 (15%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L+ N I + L +T++ ++ + +T ++ L + +N +
Sbjct: 180 YSLSLNYNQIEDI---SPLA-SLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKI 233
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + L + L + + N I I+ + + ++ +++ + QI I
Sbjct: 234 TDLSPLANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDI 280
Score = 59.9 bits (146), Expect = 4e-11
Identities = 18/114 (15%), Positives = 43/114 (37%), Gaps = 8/114 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
N I + + +T + L + K+ + ++ + L++ N +
Sbjct: 202 HYFTAYVNQITDI---TPVA-NMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQI 255
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
S + ++ + LK +N+ N I IS + + + ++N Q+ E
Sbjct: 256 SDINAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVI 307
Score = 59.9 bits (146), Expect = 4e-11
Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 6/109 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L + +N I L L ++ + L + ++ ++ A + +T + L++ N +
Sbjct: 224 NSLKIGNNKITDL---SPLA-NLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQI 277
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
S + L + L S+ L +N + + + +S I I
Sbjct: 278 SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326
Score = 59.5 bits (145), Expect = 7e-11
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
++L++ SN I+ + + + + + L+L +L D G+TN+ L LS N +
Sbjct: 268 KMLNVGSNQISDI--SVLNNL--SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323
Query: 117 STVPSLIYIPYLKSINLAHNPI 138
+ + L + + S + A+ I
Sbjct: 324 TDIRPLASLSKMDSADFANQVI 345
Score = 58.3 bits (142), Expect = 2e-10
Identities = 21/109 (19%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L ++ ++ Q + +I KL + K+ + +TN++ L+L+ N +
Sbjct: 25 IRAVLQKASV----TDVVTQEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQI 78
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + L + L ++ + N I IS + Q+ +R + ++ I I
Sbjct: 79 TDISPLSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNISDI 125
Score = 58.3 bits (142), Expect = 2e-10
Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 7/109 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L+L +N+ + +T + L + + K++ V +T++ L L+ N +
Sbjct: 135 YSLNLGANHNLSDLSPLS---NMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQI 189
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ L + L N I I+ + + + + N +I +
Sbjct: 190 EDISPLASLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDL 236
Score = 55.2 bits (134), Expect = 2e-09
Identities = 16/112 (14%), Positives = 43/112 (38%), Gaps = 8/112 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L ++ + +Q +L TN++ L L ++ + + + L + N +
Sbjct: 47 TKLVVAGEKVASIQGIEYL----TNLEYLNLNGNQITDIS--PLSNLVKLTNLYIGTNKI 100
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
+ + +L + L+ + L + I IS + + +++ + S
Sbjct: 101 TDISALQNLTNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSDLSP 150
Score = 54.5 bits (132), Expect = 3e-09
Identities = 18/108 (16%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L++ +N I+ + + T ++ L + ++ + ++ ++ L L++N L
Sbjct: 246 TWLEIGTNQISDI--NAVKDL--TKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQL 299
Query: 117 STVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
+ + L ++ L+ N I I S + D +N I
Sbjct: 300 GNEDMEVIGGLTNLTTLFLSQNHITDIR--PLASLSKMDSADFANQVI 345
Score = 52.2 bits (126), Expect = 2e-08
Identities = 18/110 (16%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L + +N I + + TN+++LYL + + + +T M L+L N
Sbjct: 91 TNLYIGTNKITDI--SALQNL--TNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHN 144
Query: 117 STVPSLI-YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ S + + L + + + + ++ + + + ++ QI I
Sbjct: 145 LSDLSPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIEDI 192
Score = 42.1 bits (100), Expect = 4e-05
Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
L ++ V + + + + +A + I + + Y++++ QI
Sbjct: 22 AEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQIT 79
Query: 164 TI 165
I
Sbjct: 80 DI 81
Score = 38.7 bits (91), Expect = 6e-04
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L++N + E+ + TN+ L+L + + D R ++ MD D ++ ++
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGL--TNLTTLFLSQNHIT--DIRPLASLSKMDSADFANQVI 345
Query: 117 S 117
Sbjct: 346 K 346
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 61.3 bits (148), Expect = 2e-11
Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L+ N + +I + N+ L+L + K++ D + + + + L L N +
Sbjct: 68 TKLFLNGNKL----TDIKPLTNLKNLGWLFLDENKIK--DLSSLKDLKKLKSLSLEHNGI 121
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
S + L+++P L+S+ L +N I I+ + + + + QI I
Sbjct: 122 SDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI 168
Score = 59.0 bits (142), Expect = 1e-10
Identities = 18/109 (16%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+L ++ + Q + +I ++ ++ V + + N+ +L L+ N L
Sbjct: 24 IKDNLKKKSV----TDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKL 77
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + L + L + L N I +S S + ++ + + + I I
Sbjct: 78 TDIKPLTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDI 124
Score = 58.6 bits (141), Expect = 2e-10
Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 9/133 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L L +N I + L +T + L L ++ D G+T + L LS N +
Sbjct: 134 ESLYLGNNKITDIT---VLS-RLTKLDTLSLEDNQIS--DIVPLAGLTKLQNLYLSKNHI 187
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQ---STPGIRYIDMSNCQIHTIYSEAFYGS 173
S + +L + L + L ++ D S I + Y
Sbjct: 188 SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEK 247
Query: 174 DQIRRPTITGQWK 186
++ +
Sbjct: 248 PNVKWHLPEFTNE 260
Score = 57.8 bits (139), Expect = 3e-10
Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L N I K++ + ++ L L + ++ + ++ L L +N +
Sbjct: 90 GWLFLDENKI----KDLSSLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKI 143
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + L + L +++L N I I ++ + +S I +
Sbjct: 144 TDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL 190
Score = 57.4 bits (138), Expect = 4e-10
Identities = 17/107 (15%), Positives = 42/107 (39%), Gaps = 8/107 (7%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
S I K+IF K L+K + D + ++D++ +++ + +
Sbjct: 4 TITVSTPI----KQIFPDDAFAETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKS 57
Query: 119 VPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
V + Y+P + + L N + I + + ++ + +I +
Sbjct: 58 VQGIQYLPNVTKLFLNGNKLTDIK--PLTNLKNLGWLFLDENKIKDL 102
Score = 33.5 bits (76), Expect = 0.037
Identities = 8/60 (13%), Positives = 15/60 (25%), Gaps = 2/60 (3%)
Query: 106 MDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
M E + + NL + + I I +N I ++
Sbjct: 1 MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV 58
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 60.1 bits (146), Expect = 4e-11
Identities = 18/109 (16%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ +N+ + Q + I L + ++ + + N+ L+L DN +
Sbjct: 22 IKIAAGKSNVT----DTVTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQI 75
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + L + + + L+ NP+ +S + I+ +D+++ QI +
Sbjct: 76 TDLAPLKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDV 122
Score = 59.7 bits (145), Expect = 4e-11
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
QVL L N I + L G+TN+Q L + ++ + ++ + L DN +
Sbjct: 132 QVLYLDLNQITNIS---PLA-GLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKI 185
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
S + L +P L ++L +N I +S +T + + ++N I
Sbjct: 186 SDISPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232
Score = 57.0 bits (138), Expect = 4e-10
Identities = 19/109 (17%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L + ++ +Q + N+ L L+ ++ + + +T + EL+LS N L
Sbjct: 44 TTLSAFGTGVTTIE---GVQ-YLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPL 97
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
V ++ + +K+++L I ++ ++ + + QI I
Sbjct: 98 KNVSAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNI 144
Score = 56.2 bits (136), Expect = 7e-10
Identities = 19/109 (17%), Positives = 47/109 (43%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L+LS N + K + G+ +I+ L L ++ V G++N+ L L N +
Sbjct: 88 TELELSGNPL----KNVSAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQI 141
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + L + L+ +++ + + ++ + + + + +I I
Sbjct: 142 TNISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI 188
Score = 50.8 bits (122), Expect = 5e-08
Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 9/123 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q L + + ++ L L ++ + L K+ + + N+ E+ L +N +
Sbjct: 154 QYLSIGNAQVSDLT---PLA-NLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQI 207
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQST---PGIRYIDMSNCQIHTIYSEAFYGS 173
S V L L + L + I + + ++ + TI Y S
Sbjct: 208 SDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYAS 267
Query: 174 DQI 176
+
Sbjct: 268 PNL 270
Score = 40.1 bits (94), Expect = 2e-04
Identities = 5/62 (8%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
N ++ + ++ + + + +++ + I Q + +++ + QI
Sbjct: 19 ANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQIT 76
Query: 164 TI 165
+
Sbjct: 77 DL 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 59.9 bits (145), Expect = 6e-11
Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 16/119 (13%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
T+P+ + L + NN+ L ++ L + +L + G+ +
Sbjct: 54 TLPDCLPAHITTLVIPDNNLTSLPAL------PPELRTLEVSGNQLTSLPV-LPPGLLEL 106
Query: 107 DELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
L +PS L + + N + + PG++ + +S+ Q+ ++
Sbjct: 107 SIFSNPLTHLPALPS-----GLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL 156
Score = 52.6 bits (126), Expect = 2e-08
Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 16/109 (14%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q L +S N + L + + KL+ +L + + + EL +S N L
Sbjct: 184 QELSVSDNQLASLPTLP------SELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRL 233
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+++P L LK + ++ N + + G+ + + Q+ +
Sbjct: 234 TSLPVL--PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRL 276
Score = 52.6 bits (126), Expect = 2e-08
Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 17/122 (13%)
Query: 44 NFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
++P Q L +S N + L + + KL+ +L +
Sbjct: 132 QLTSLPVLPP-GLQELSVSDNQLASLPALP------SELCKLWAYNNQLTSLPM----LP 180
Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
+ + EL +SDN L+++P+L L + +N + + + G++ + +S ++
Sbjct: 181 SGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLT 234
Query: 164 TI 165
++
Sbjct: 235 SL 236
Score = 52.2 bits (125), Expect = 2e-08
Identities = 17/93 (18%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L +S N + L + +++L + +L + + + L + N L
Sbjct: 224 KELIVSGNRLTSLPVLP------SELKELMVSGNRLTSLPML----PSGLLSLSVYRNQL 273
Query: 117 STVP-SLIYIPYLKSINLAHNPIHQISSYSFQS 148
+ +P SLI++ ++NL NP+ + + + +
Sbjct: 274 TRLPESLIHLSSETTVNLEGNPLSERTLQALRE 306
Score = 36.4 bits (84), Expect = 0.005
Identities = 9/62 (14%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
L++ ++ L+T+P + ++ ++ + N + + + P +R +++S Q+
Sbjct: 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT 94
Query: 164 TI 165
++
Sbjct: 95 SL 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 60.0 bits (145), Expect = 7e-11
Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 15/118 (12%)
Query: 48 IPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
+ E + L L+ N++ L + I L + + L + + +++
Sbjct: 53 LKECLINQFSELQLNRLNLSSLPDNLP-----PQITVLEITQNALISLPEL----PASLE 103
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
LD DN LST+P L LK +++ +N + + + YI+ N Q+ +
Sbjct: 104 YLDACDNRLSTLPEL--PASLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTML 155
Score = 56.1 bits (135), Expect = 1e-09
Identities = 19/119 (15%), Positives = 49/119 (41%), Gaps = 16/119 (13%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
++P+ + VL+++ N + L + +++ L +L + + ++
Sbjct: 73 SLPDNLPPQITVLEITQNALISLPEL------PASLEYLDACDNRLSTLPEL----PASL 122
Query: 107 DELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
LD+ +N L+ +P L L+ IN +N + + + + + N Q+ +
Sbjct: 123 KHLDVDNNQLTMLPEL--PALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFL 175
Score = 47.7 bits (113), Expect = 8e-07
Identities = 15/115 (13%), Positives = 35/115 (30%), Gaps = 10/115 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV---TNMDELDLSD 113
+VL + +N + L + +++ L + LE + R +
Sbjct: 163 EVLSVRNNQLTFLPELP------ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRE 216
Query: 114 NLLSTVP-SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
N ++ +P +++ + +I L NP+ S
Sbjct: 217 NRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271
Score = 46.5 bits (110), Expect = 2e-06
Identities = 19/111 (17%), Positives = 45/111 (40%), Gaps = 16/111 (14%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ ++ +N + +L + T+++ L +R +L F+ + +++ LD+S NLL
Sbjct: 143 EYINADNNQLTMLPELP------TSLEVLSVRNNQLTFLPE----LPESLEALDVSTNLL 192
Query: 117 STVPSLIY-----IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
++P++ N I I + S I + + +
Sbjct: 193 ESLPAVPVRNHHSEETEIFFRCRENRITHIPE-NILSLDPTCTIILEDNPL 242
Score = 38.0 bits (88), Expect = 0.001
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 47 TIPEGID-LDTQVLDLSSNNINVLQKEIF-LQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104
+PE + L + LD+S+N + L R+ ++ + + +
Sbjct: 174 FLPELPESL--EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPE-NILSLD 230
Query: 105 NMDELDLSDNLLSTVP 120
+ L DN LS+
Sbjct: 231 PTCTIILEDNPLSSRI 246
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 57.7 bits (140), Expect = 7e-11
Identities = 19/108 (17%), Positives = 47/108 (43%), Gaps = 5/108 (4%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
++ L++ I + ++L LR K+ +++ + D +D SDN +
Sbjct: 1 MVKLTAELIEQAAQYTNA----VRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIR 55
Query: 118 TVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + LK++ + +N I +I Q+ P + + ++N + +
Sbjct: 56 KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103
Score = 49.3 bits (118), Expect = 7e-08
Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 10/106 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+D S N I L L ++ L + ++ + + + + ++ EL L++N L
Sbjct: 45 DAIDFSDNEIRKLDGFPLL----RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100
Query: 117 STVPSLIYI---PYLKSINLAHNPIHQISSYS---FQSTPGIRYID 156
+ L + L + + NP+ Y P +R +D
Sbjct: 101 VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 59.8 bits (144), Expect = 7e-11
Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 13/136 (9%)
Query: 29 CKWKAGKRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
K + V + T+ ++ L LDLS N + L + + ++ L
Sbjct: 436 LKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPAL---AALRCLEVLQ 492
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYI---PYLKSINLAHNPIHQISS 143
LE VD + + EL L +N L ++ + P L +NL N + Q
Sbjct: 493 ASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550
Query: 144 YS---FQSTPGIRYID 156
+ P + I
Sbjct: 551 IQERLAEMLPSVSSIL 566
Score = 49.4 bits (117), Expect = 3e-07
Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 6/131 (4%)
Query: 30 KWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK 89
A + ++ + D +VL L+ ++ VL L+ + + L L
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL---CHLEQ-LLLVTHLDLSH 472
Query: 90 CKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSY-SFQS 148
+L + A + ++ L SDN L V + +P L+ + L +N + Q ++ S
Sbjct: 473 NRLRALPP-ALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVS 531
Query: 149 TPGIRYIDMSN 159
P + +++
Sbjct: 532 CPRLVLLNLQG 542
Score = 42.1 bits (98), Expect = 6e-05
Identities = 11/109 (10%), Positives = 34/109 (31%), Gaps = 3/109 (2%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L + + L + K + ++ L L+ L
Sbjct: 396 DPLLYEKETLQYFST--LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL 453
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + L + + ++L+HN + + + + + + S+ + +
Sbjct: 454 TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 501
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 58.8 bits (142), Expect = 1e-10
Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 11/117 (9%)
Query: 57 QVLDLSSNNINVLQ--KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD---ELDL 111
LDLS N + + +Q L LR +E LDL
Sbjct: 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235
Query: 112 SDNLLSTVPSLI---YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
S N L + L S+NL+ + Q+ + +D+S ++
Sbjct: 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLDRN 289
Score = 57.2 bits (138), Expect = 4e-10
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q LDLS N++ + + L L L+ V ++ LDLS N L
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDW-PSQLNSLNLSFTGLKQVPKGLPAKLS---VLDLSYNRL 286
Query: 117 STVPSLIYIPYLKSINLAHNPI 138
PS +P + +++L NP
Sbjct: 287 DRNPSPDELPQVGNLSLKGNPF 308
Score = 52.2 bits (125), Expect = 2e-08
Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 11/130 (8%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEI--FLQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104
+ E D +L+L + + + Q ++ L + + R
Sbjct: 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173
Query: 105 NMDELDLSDNLLSTVPSLI------YIPYLKSINLAHNPIHQISSYSFQST---PGIRYI 155
+ LDLSDN LI P L+ + L + + S ++ +
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233
Query: 156 DMSNCQIHTI 165
D+S+ +
Sbjct: 234 DLSHNSLRDA 243
Score = 41.8 bits (98), Expect = 7e-05
Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 10/119 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL----EFVDDRAFRGVTNMDELDLS 112
Q L L + + L+ ++ L LR ++ + + L ++
Sbjct: 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157
Query: 113 DNLLSTVP--SLIYIPYLKSINLAHNPI----HQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ P L +++L+ NP IS+ P ++ + + N + T
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 58.1 bits (141), Expect = 2e-10
Identities = 17/109 (15%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+L ++ + Q + +I ++ ++ V + + N+ +L L+ N L
Sbjct: 27 IKDNLKKKSV----TDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKL 80
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + L + L + L N + +S S + ++ + + + I I
Sbjct: 81 TDIKPLANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGISDI 127
Score = 57.8 bits (140), Expect = 2e-10
Identities = 23/109 (21%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L+ N + +I + N+ L+L + K++ + + + + + L L N +
Sbjct: 71 TKLFLNGNKL----TDIKPLANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGI 124
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
S + L+++P L+S+ L +N I I+ + + + + QI I
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI 171
Score = 55.8 bits (135), Expect = 1e-09
Identities = 17/109 (15%), Positives = 42/109 (38%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L N + K++ + ++ L L + ++ + ++ L L +N +
Sbjct: 93 GWLFLDENKV----KDLSSLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKI 146
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + L + L +++L N I I ++ + +S I +
Sbjct: 147 TDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL 193
Score = 54.7 bits (132), Expect = 3e-09
Identities = 14/105 (13%), Positives = 40/105 (38%), Gaps = 8/105 (7%)
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
I +IF K L+K + D + ++D++ +++ + +V
Sbjct: 9 TVPTPIK----QIFSDDAFAETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKSVQ 62
Query: 121 SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ Y+P + + L N + I + + ++ + ++ +
Sbjct: 63 GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL 105
Score = 53.5 bits (129), Expect = 6e-09
Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 9/123 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L L +N I + L +T + L L ++ + G+T + L LS N +
Sbjct: 137 ESLYLGNNKITDIT---VLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQ---STPGIRYIDMSNCQIHTIYSEAFYGS 173
S + +L + L + L ++ D S I + Y
Sbjct: 191 SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEK 250
Query: 174 DQI 176
+
Sbjct: 251 PNV 253
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 56.6 bits (137), Expect = 4e-10
Identities = 18/106 (16%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L ++ N + L + +L+L +L D + N++ L + +N L
Sbjct: 88 EELSVNRNRLKNLNGIPSA-----CLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKL 140
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
++ L ++ L+ ++L N I + +ID++ +
Sbjct: 141 KSIVMLGFLSKLEVLDLHGNEITNTG--GLTRLKKVNWIDLTGQKC 184
Score = 51.9 bits (125), Expect = 2e-08
Identities = 16/105 (15%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
IN ++F G+ N K L K + D + + ++ + + ++ + ++
Sbjct: 4 QRPTPIN----QVFPDPGLANAVKQNLGKQSVT--DLVSQKELSGVQNFNGDNSNIQSLA 57
Query: 121 SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + LK ++L+HN I +S + + + ++ ++ +
Sbjct: 58 GMQFFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNRLKNL 100
Score = 51.6 bits (124), Expect = 3e-08
Identities = 15/109 (13%), Positives = 43/109 (39%), Gaps = 9/109 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+L ++ ++ Q ++ +Q ++ + + TN+ EL LS N +
Sbjct: 22 VKQNLGKQSV----TDLVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQI 75
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
S + L + L+ +++ N + ++ + + + N ++
Sbjct: 76 SDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC---LSRLFLDNNELRDT 121
Score = 48.5 bits (116), Expect = 3e-07
Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 9/123 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L +N + L + N++ L +R KL+ ++ ++ LDL N +
Sbjct: 109 SRLFLDNNELRDTD---SLI-HLKNLEILSIRNNKLK--SIVMLGFLSKLEVLDLHGNEI 162
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQS---TPGIRYIDMSNCQIHTIYSEAFYGS 173
+ L + + I+L T ++ D + I + Y
Sbjct: 163 TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVD 222
Query: 174 DQI 176
+
Sbjct: 223 GCV 225
Score = 30.8 bits (70), Expect = 0.25
Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
E ++ V + NL + + S + G++ + N I ++
Sbjct: 1 ESIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL 56
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 55.4 bits (134), Expect = 2e-09
Identities = 15/109 (13%), Positives = 44/109 (40%), Gaps = 12/109 (11%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ + +N + L + L + +Y L+ + D +++ + +N+L
Sbjct: 176 EFIAAGNNQLEELPELQNL----PFLTAIYADNNSLKKLPD----LPLSLESIVAGNNIL 227
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+P L +P+L +I +N + + P + +++ + + +
Sbjct: 228 EELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDL 272
Score = 54.6 bits (132), Expect = 3e-09
Identities = 16/118 (13%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Query: 48 IPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
+ + +D L+L++ ++ L + +++ L L + + + + ++
Sbjct: 65 LRDCLDRQAHELELNNLGLSSLPEL------PPHLESLVASCNSLTELPE-LPQSLKSLL 117
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + LS +P P L+ + +++N + ++ Q++ ++ ID+ N + +
Sbjct: 118 VDNNNLKALSDLP-----PLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKL 168
Score = 54.6 bits (132), Expect = 4e-09
Identities = 18/109 (16%), Positives = 44/109 (40%), Gaps = 16/109 (14%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LD+S N + L + N+ L ++ + D +++EL++S+N L
Sbjct: 280 TFLDVSENIFSGLSELP------PNLYYLNASSNEIRSLCDL----PPSLEELNVSNNKL 329
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+P+L P L+ + + N + ++ ++ + + +
Sbjct: 330 IELPAL--PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREF 372
Score = 53.8 bits (130), Expect = 7e-09
Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 15/122 (12%)
Query: 44 NFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
++PE + L S N++ L + + ++ L +
Sbjct: 82 GLSSLPELPP-HLESLVASCNSLTELPELPQ---SLKSLLVDNNNLKALSDL-------P 130
Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
++ L +S+N L +P L +LK I++ +N + ++ P + +I N Q+
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLE 186
Query: 164 TI 165
+
Sbjct: 187 EL 188
Score = 53.5 bits (129), Expect = 9e-09
Identities = 14/122 (11%), Positives = 39/122 (31%), Gaps = 23/122 (18%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD---------------RAFR 101
+ L S N++ + + N+++L++ L D
Sbjct: 340 ERLIASFNHLAEVPELP------QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393
Query: 102 GVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQ 161
N+ +L + N L P + ++ + + + ++ ++T + +
Sbjct: 394 LPQNLKQLHVETNPLREFPDIP--ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451
Query: 162 IH 163
H
Sbjct: 452 HH 453
Score = 52.3 bits (126), Expect = 2e-08
Identities = 19/109 (17%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ + +N + L E+ + + +Y L+ + D +++ L++ DN L
Sbjct: 218 ESIVAGNNILEEL-PELQ---NLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYL 269
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ +P L L ++++ N +S P + Y++ S+ +I ++
Sbjct: 270 TDLPEL--PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL 312
Score = 42.7 bits (101), Expect = 3e-05
Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 35/147 (23%)
Query: 49 PEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
P + Q S+N+ + E + + + Y + E M
Sbjct: 5 PRNVSNTFLQEPLRHSSNLTEMPVEAE---NVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 108 -------------ELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQ------- 147
EL+L++ LS++P L P+L+S+ + N + ++
Sbjct: 62 VSRLRDCLDRQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPELPQSLKSLLVD 119
Query: 148 ---------STPGIRYIDMSNCQIHTI 165
P + Y+ +SN Q+ +
Sbjct: 120 NNNLKALSDLPPLLEYLGVSNNQLEKL 146
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 54.7 bits (132), Expect = 4e-09
Identities = 16/109 (14%), Positives = 33/109 (30%), Gaps = 12/109 (11%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LD S N I L + +L + +D + LD S N L
Sbjct: 173 TTLDCSFNKITELDVS-----QNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKL 224
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + + + L + + N ++ + + + + I
Sbjct: 225 TEID-VTPLTQLTYFDCSVN---PLTELDVSTLSKLTTLHCIQTDLLEI 269
Score = 53.9 bits (130), Expect = 7e-09
Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 11/109 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L+ +N + L + L + L +D T + ELD N
Sbjct: 109 TYLNCDTNKLTKLDVS-----QNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKK 160
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
T + L +++ + N +I+ + ++ I +
Sbjct: 161 ITKLDVTPQTQLTTLDCSFN---KITELDVSQNKLLNRLNCDTNNITKL 206
Score = 52.8 bits (127), Expect = 1e-08
Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 11/109 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LD +++I + I +T + KL + +D TN+ L N L
Sbjct: 45 TSLDCHNSSITDM-TGIE---KLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKL 97
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + + + L +N N +++ P + Y++ + + I
Sbjct: 98 TNLD-VTPLTKLTYLNCDTN---KLTKLDVSQNPLLTYLNCARNTLTEI 142
Score = 51.2 bits (123), Expect = 4e-08
Identities = 13/109 (11%), Positives = 32/109 (29%), Gaps = 11/109 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
D S N + L + + L+ + L +D T +
Sbjct: 236 TYFDCSVNPLTELDVSTL-----SKLTTLHCIQTDLLEID---LTHNTQLIYFQAEGCRK 287
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + L ++ I+ P + Y+ ++N ++ +
Sbjct: 288 IKELDVTHNTQLYLLDCQAA---GITELDLSQNPKLVYLYLNNTELTEL 333
Score = 47.8 bits (114), Expect = 7e-07
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 8/93 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+LD + I E+ L + LYL +L +D T + L + +
Sbjct: 300 YLLDCQAAGI----TELDLS-QNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHI 351
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQST 149
S+ IP L + A + + +
Sbjct: 352 QDFSSVGKIPALNNNFEAEGQTITMPKETLTNN 384
Score = 45.4 bits (108), Expect = 4e-06
Identities = 8/85 (9%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQ 140
N +++ D + + + LD ++ ++ + + + L + N
Sbjct: 19 NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSN---N 75
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTI 165
I++ + Y+ + ++ +
Sbjct: 76 ITTLDLSQNTNLTYLACDSNKLTNL 100
Score = 37.0 bits (86), Expect = 0.003
Identities = 11/89 (12%), Positives = 28/89 (31%), Gaps = 14/89 (15%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L++ + L T ++ L ++ + + ++ ++
Sbjct: 321 VYLYLNNTELTELDVS-----HNTKLKSLSCVNAHIQDFS--SVGKIPALNNNFEAEGQT 373
Query: 117 STVP-------SLIYIPYLKSINLAHNPI 138
T+P SL ++ NP+
Sbjct: 374 ITMPKETLTNNSLTIAVSPDLLDQFGNPM 402
Score = 27.3 bits (61), Expect = 4.3
Identities = 13/104 (12%), Positives = 34/104 (32%), Gaps = 12/104 (11%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-----EFVDDRAFRGVTNMDELDL 111
+ L + +I + I + + + + E + + + + D LD
Sbjct: 342 KSLSCVNAHIQ----DFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQ 397
Query: 112 SDNLLSTVPSLIYIPYLKSINLAHNPI---HQISSYSFQSTPGI 152
N ++ P + + + + + +Y+F S G
Sbjct: 398 FGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGA 441
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 52.7 bits (127), Expect = 5e-09
Identities = 17/112 (15%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L +++ + + G++N+++L + + G+T++ LD+S +
Sbjct: 69 KDLTINNIHATNYN---PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124
Query: 117 S--TVPSLIYIPYLKSINLAHNPIHQISSYS-FQSTPGIRYIDMSNCQIHTI 165
+ + +P + SI+L++N I+ ++ P ++ +++ +H
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNG--AITDIMPLKTLPELKSLNIQFDGVHDY 174
Score = 51.5 bits (124), Expect = 2e-08
Identities = 16/107 (14%), Positives = 42/107 (39%), Gaps = 5/107 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN-L 115
+ L + ++ + + T++ L + + + ++ +DLS N
Sbjct: 91 ERLRIMGKDVTSDKIPNLSGL--TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148
Query: 116 LSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
++ + L +P LKS+N+ + +H + P + + + I
Sbjct: 149 ITDIMPLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193
Score = 40.7 bits (96), Expect = 1e-04
Identities = 9/125 (7%), Positives = 38/125 (30%), Gaps = 29/125 (23%)
Query: 39 ECIDRNFYTIPEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97
+ ++ +++ + L++ N+ +T I+
Sbjct: 28 GLLGQSSTANITEAQMNSLTYITLANINVT----------DLTGIEYA------------ 65
Query: 98 RAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDM 157
N+ +L +++ + + + L+ + + + + + +D+
Sbjct: 66 ------HNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119
Query: 158 SNCQI 162
S+
Sbjct: 120 SHSAH 124
Score = 29.5 bits (67), Expect = 0.48
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 13/65 (20%)
Query: 57 QVLDLSSNN----INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
+DLS N I L+ + ++ L ++ + D R +++L
Sbjct: 139 NSIDLSYNGAITDIMPLK-------TLPELKSLNIQFDGVH--DYRGIEDFPKLNQLYAF 189
Query: 113 DNLLS 117
+
Sbjct: 190 SQTIG 194
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 52.0 bits (125), Expect = 6e-09
Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 15/127 (11%)
Query: 41 IDRNFYTIPEGIDLDT-----QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFV 95
+D + + L + L + + + ++ ++KL L ++
Sbjct: 24 LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKL--NKLKKLELSDNRVSGG 79
Query: 96 DDRAFRGVTNMDELDLSDNL---LSTVPSLIYIPYLKSINLAHNPIHQISSYS---FQST 149
+ N+ L+LS N LST+ L + LKS++L + + ++ Y F+
Sbjct: 80 LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL 139
Query: 150 PGIRYID 156
P + Y+D
Sbjct: 140 PQLTYLD 146
Score = 47.7 bits (114), Expect = 2e-07
Identities = 12/86 (13%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 81 NIQKLYLRKCKLEFVDDRA-FRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIH 139
++++L L + ++ L + L+++ +L + LK + L+ N +
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVS 77
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTI 165
+ P + ++++S +I +
Sbjct: 78 GGLEVLAEKCPNLTHLNLSGNKIKDL 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 52.1 bits (125), Expect = 8e-09
Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 15/127 (11%)
Query: 41 IDRNFYTIPEGIDLDT-----QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFV 95
+D + L + L L + + + ++ ++KL L + ++
Sbjct: 31 LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKL--PKLKKLELSENRIFGG 86
Query: 96 DDRAFRGVTNMDELDLSDNLLSTVPSLIYI---PYLKSINLAHNPIHQISSYS---FQST 149
D + N+ L+LS N L + +L + LKS++L + + ++ Y F+
Sbjct: 87 LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146
Query: 150 PGIRYID 156
P + Y+D
Sbjct: 147 PQLTYLD 153
Score = 49.7 bits (119), Expect = 5e-08
Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 69 LQKEIFLQMG---ITNIQKLYLRKCKLEFVDDRAFRGV-TNMDELDLSDNLLSTVPSLIY 124
+++ I L++ +++L L CK N++ L L + L +V +L
Sbjct: 10 MKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPK 69
Query: 125 IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+P LK + L+ N I + P + ++++S ++ I
Sbjct: 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens}
PDB: 3rez_A*
Length = 130
Score = 49.0 bits (117), Expect = 4e-08
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 23 CPLGCSCKWKAGKRTVECIDRN--FYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
CP CSC V+C R + ++P +DT L L+ NN+ L + +
Sbjct: 2 CPAPCSCA----GTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDAL--P 55
Query: 81 NIQKLYLR 88
++ +L
Sbjct: 56 ALRTAHLG 63
Score = 29.8 bits (67), Expect = 0.29
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 104 TNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNP 137
+ EL L+ N L+ +P L +P L++ +L NP
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 50.3 bits (121), Expect = 1e-07
Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 19/125 (15%)
Query: 48 IPEGIDLDT-QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV-- 103
+ G+ L++ +VLDLS+N+I+ L G ++ L + K+ G
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS--------GDVD 195
Query: 104 ----TNMDELDLSDNLLS-TVPSLIYIPYLKSINLAHNPIH-QISSYSFQSTPGIRYIDM 157
N++ LD+S N S +P L L+ ++++ N + S + + ++ +++
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNI 254
Query: 158 SNCQI 162
S+ Q
Sbjct: 255 SSNQF 259
Score = 46.4 bits (111), Expect = 2e-06
Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 13/127 (10%)
Query: 47 TIPEGIDLDT---QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLE-FVDDRAFR 101
IP+ + LDLS N+ + + ++ L L +
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG---SCSLLESLALSSNNFSGELPMDTLL 340
Query: 102 GVTNMDELDLSDNLLS-TVPSLIY--IPYLKSINLAHNPIH-QISSYSFQST-PGIRYID 156
+ + LDLS N S +P + L +++L+ N I Q+ ++ +
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 157 MSNCQIH 163
+ N
Sbjct: 401 LQNNGFT 407
Score = 46.1 bits (110), Expect = 3e-06
Identities = 18/112 (16%), Positives = 46/112 (41%), Gaps = 9/112 (8%)
Query: 57 QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLE---FVDDRAFRGVTNMDELDLS 112
+ L++SSN ++ + L++ +++ L L + V G + L +S
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKL--NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 186
Query: 113 DNLLSTVPSLIYIPYLKSINLAHNPIH-QISSYSFQSTPGIRYIDMSNCQIH 163
N +S + L+ ++++ N I ++++D+S ++
Sbjct: 187 GNKISGDVDVSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLS 236
Score = 44.9 bits (107), Expect = 8e-06
Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 6/110 (5%)
Query: 57 QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
LDLSSNN + + + Q +Q+LYL+ + + L LS N
Sbjct: 371 LTLDLSSNNFSGPILPNLC-QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 116 LS-TVP-SLIYIPYLKSINLAHNPIH-QISSYSFQSTPGIRYIDMSNCQI 162
LS T+P SL + L+ + L N + +I + + + +
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ-ELMYVKTLETLILDFNDL 478
Score = 42.2 bits (100), Expect = 5e-05
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ LD+SSNN + + + +Q L + KL RA T + L++S N
Sbjct: 203 EFLDVSSNNFSTGIPFLG---DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 117 S-TVPSLIYIPYLKSINLAHNPIH-QISSYSFQSTPGIRYIDMSNCQIH 163
+P L + L+ ++LA N +I + + + +D+S +
Sbjct: 260 VGPIPPLP-LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307
Score = 39.1 bits (92), Expect = 6e-04
Identities = 17/115 (14%), Positives = 44/115 (38%), Gaps = 11/115 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL--EFVDDRAFRGVTNMDELDLSDN 114
+ L LS+++ + + ++ L L + L + + + L++S N
Sbjct: 80 ESLFLSNSH---INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN 136
Query: 115 LLS---TVPSLIYIPYLKSINLAHNPIHQ---ISSYSFQSTPGIRYIDMSNCQIH 163
L V + + L+ ++L+ N I + ++++ +S +I
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191
Score = 37.2 bits (87), Expect = 0.003
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 47 TIPEGIDLDTQVLDLS-SNNINVLQKEIFLQMG-ITNIQKLYLRKCKLEFVDDRAFRGVT 104
I D + + N+ Q Q+ ++ + F
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 105 NMDELDLSDNLLS-TVP-SLIYIPYLKSINLAHN 136
+M LD+S N+LS +P + +PYL +NL HN
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666
Score = 33.7 bits (78), Expect = 0.033
Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 28/121 (23%)
Query: 57 QVLDLSSNNINVLQKEIFLQMG-ITNIQKLYLRKCKLEFVDDRAFRGV--------TNMD 107
L LS N L I +G ++ ++ L L LE G ++
Sbjct: 421 VSLHLSFNY---LSGTIPSSLGSLSKLRDLKLWLNMLE--------GEIPQELMYVKTLE 469
Query: 108 ELDLSDNLLS-TVP-SLIYIPYLKSINLAHNPIHQIS---SYSFQSTPGIRYIDMSNCQI 162
L L N L+ +P L L I+L++N +++ + + +SN
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNN---RLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 163 H 163
Sbjct: 527 S 527
Score = 33.7 bits (78), Expect = 0.036
Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 12/108 (11%)
Query: 57 QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
LDL++N N + +F Q + + + E + NL
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQS-------GKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593
Query: 116 LSTV----PSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN 159
L L + N+ +S +F + + ++DMS
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641
Score = 33.0 bits (76), Expect = 0.058
Identities = 13/63 (20%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 104 TNMDELDLSDNLLS-TVPSLIYIPYLKSINLAHNPIH-QISS-YSFQSTPGIRYIDMSNC 160
T ++ L LS++ ++ +V L S++L+ N + +++ S S G++++++S+
Sbjct: 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN 136
Query: 161 QIH 163
+
Sbjct: 137 TLD 139
Score = 30.3 bits (69), Expect = 0.43
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 104 TNMDELDLSDNLLS-TVP-SLIYIPYLKSINLAHN 136
++ LDLS N L +P ++ + L I+L++N
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
Score = 29.5 bits (67), Expect = 0.73
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 22/93 (23%)
Query: 57 QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV--------TNMD 107
+ LS+N + + K I + N+ L L G ++
Sbjct: 493 NWISLSNNRLTGEIPKWIG---RLENLAILKLSNNSFS--------GNIPAELGDCRSLI 541
Query: 108 ELDLSDNLLS-TVPS-LIYIPYLKSINLAHNPI 138
LDL+ NL + T+P+ + + N
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Score = 29.5 bits (67), Expect = 0.81
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 108 ELDLSDNLLSTV-----PSLIYIPYLKSINLAHNPIH-QISSYSFQSTPGIRYIDMSNCQ 161
+DLS L+ SL+ + L+S+ L+++ I+ +S F+ + + +D+S
Sbjct: 54 SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS--GFKCSASLTSLDLSRNS 111
Query: 162 IH 163
+
Sbjct: 112 LS 113
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 46.7 bits (112), Expect = 5e-07
Identities = 10/98 (10%), Positives = 29/98 (29%), Gaps = 7/98 (7%)
Query: 47 TIPEGI-DLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104
+ + +L L + L+ + + KL +L + A +
Sbjct: 64 RLKAAVGELPEKSKLQEIYQELTRLKAAVG---ELPEKSKLQEIYQELTELKA-AVGELP 119
Query: 105 NMDELDLSDNLLSTVPSLI-YIPYLKSINLAHNPIHQI 141
+L L+ + + + +P + + +
Sbjct: 120 EKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDL 157
Score = 45.1 bits (108), Expect = 2e-06
Identities = 9/86 (10%), Positives = 27/86 (31%), Gaps = 5/86 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L + L+ + + KL +L + A + +L L
Sbjct: 30 SKLQEIYQELTRLKAAVG---ELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQEL 85
Query: 117 STVPSLI-YIPYLKSINLAHNPIHQI 141
+ + + + +P + + + ++
Sbjct: 86 TRLKAAVGELPEKSKLQEIYQELTEL 111
Score = 45.1 bits (108), Expect = 2e-06
Identities = 10/110 (9%), Positives = 34/110 (30%), Gaps = 6/110 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L + L+ + + KL +L + A + +L L
Sbjct: 7 SKLQEIYQELTRLKAAVG---ELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQEL 62
Query: 117 STVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + + + +P + + + ++ + + P + ++ +
Sbjct: 63 TRLKAAVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTEL 111
Score = 37.8 bits (89), Expect = 6e-04
Identities = 10/92 (10%), Positives = 26/92 (28%), Gaps = 13/92 (14%)
Query: 47 TIPEGI-DLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104
+ + +L L + L+ + + KL +L + A +
Sbjct: 87 RLKAAVGELPEKSKLQEIYQELTELKAAVG---ELPEKSKLQEIYQELTQLKA-AVGELP 142
Query: 105 NMDELDLSDNLLSTVPSLIYIPYLKSINLAHN 136
+ + L+ + + L H+
Sbjct: 143 DQSKQQQIYQELTDLKTAF-------ERLGHH 167
Score = 33.2 bits (77), Expect = 0.026
Identities = 4/63 (6%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 104 TNMDELDLSDNLLSTVPSLI-YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
+L L+ + + + +P + + + ++ + + P + ++
Sbjct: 4 PEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQEL 62
Query: 163 HTI 165
+
Sbjct: 63 TRL 65
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 45.0 bits (107), Expect = 4e-06
Identities = 17/130 (13%), Positives = 47/130 (36%), Gaps = 6/130 (4%)
Query: 36 RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFV 95
T+ P+ +T +L ++ + + +I ++ ++ V
Sbjct: 1 ETITVSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQN----ELNSIDQIIANNSDIKSV 56
Query: 96 DDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYI 155
+ + N+ L L N L + +L + L + L N + + + F ++ +
Sbjct: 57 Q--GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114
Query: 156 DMSNCQIHTI 165
+ Q+ ++
Sbjct: 115 VLVENQLQSL 124
Score = 44.2 bits (105), Expect = 8e-06
Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 36/148 (24%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDL-----------------------DTQ 57
P + ++ +L + +
Sbjct: 11 QIFPDDAFAE----TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVR 66
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
L L N ++ + +TN+ L L +L+ + + F +TN+ EL L +N L
Sbjct: 67 YLALGGNKLHDI--SAL--KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122
Query: 118 TVPSLIY--IPYLKSINLAHNPIHQISS 143
++P ++ + L +NLAHN Q+ S
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHN---QLQS 147
Score = 41.5 bits (98), Expect = 8e-05
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 37 TVECIDRNFYTIPEGI-DL--DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE 93
+ ++ ++P+G+ D + L+L+ N + L K +F ++ TN+ +L L +L+
Sbjct: 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL--TNLTELDLSYNQLQ 170
Query: 94 FVDDRAFRGVTNMDELDLSDNLLSTVP-----SLIYIPYLKSINLAHNP 137
+ + F +T + +L L N L +VP L L+ I L NP
Sbjct: 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL---TSLQYIWLHDNP 216
Score = 39.2 bits (92), Expect = 4e-04
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
+ L L+ N + L +F +TN+++L L + +L+ + D F +TN+ L+L+ N
Sbjct: 86 NLTYLILTGNQLQSLPNGVF--DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 115 LLSTVPS 121
L ++P
Sbjct: 144 QLQSLPK 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 43.1 bits (102), Expect = 2e-05
Identities = 18/87 (20%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L LS+NNI + L G+ N++ L L + ++ +++ ++EL +S N +
Sbjct: 51 KHLALSTNNIEKIS---SLS-GMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQI 105
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISS 143
+++ + + L+ + +++N I
Sbjct: 106 ASLSGIEKLVNLRVLYMSNNKITNWGE 132
Score = 42.7 bits (101), Expect = 2e-05
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 12/95 (12%)
Query: 71 KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKS 130
+++ L I I+K+ D + L LS N + + SL + L+
Sbjct: 26 EKVELHGMIPPIEKM-----------DATLSTLKACKHLALSTNNIEKISSLSGMENLRI 74
Query: 131 INLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
++L N I +I + + + +S QI ++
Sbjct: 75 LSLGRNLIKKIENLD-AVADTLEELWISYNQIASL 108
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 42.2 bits (100), Expect = 5e-05
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 59 LDLSSNNINVLQK--EIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ + L+ ++ L LR L D ++++ + + L
Sbjct: 58 PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGL 116
Query: 117 STVPSLI-YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNC 160
+P + L+++ LA NP+ + + S S +R + + C
Sbjct: 117 MELPDTMQQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRAC 160
Score = 41.5 bits (98), Expect = 8e-05
Identities = 22/114 (19%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLE--------FVDDRAFRGVTNMD 107
+ L L+ N + L I + +++L +R C +L +G+ N+
Sbjct: 130 ETLTLARNPLRALPASIA---SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186
Query: 108 ELDLSDNLLSTVPSLI-YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNC 160
L L + ++P+ I + LKS+ + ++P+ + + P + +D+ C
Sbjct: 187 SLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGC 239
Score = 26.8 bits (60), Expect = 4.5
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 57 QVLDLSS-NNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDDRAFRGVTNMDELDLSDN 114
+ L L +N+ L +I +T ++KL LR C L + + + + +
Sbjct: 256 KRLILKDCSNLLTLPLDIH---RLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILVPPH 311
Query: 115 LLSTVPS 121
L + +
Sbjct: 312 LQAQLDQ 318
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 41.4 bits (98), Expect = 9e-05
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 47 TIPEGI-DLDTQVLDLSSNNINVLQKEIFLQMG-ITNIQKLYLRKCKLEFV--DDRAFRG 102
IP +L+ +DLS N L+ + + G N QK++L K L F
Sbjct: 189 KIPPTFANLNLAFVDLSRNM---LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---VGL 242
Query: 103 VTNMDELDLSDNLLS-TVP-SLIYIPYLKSINLAHN 136
N++ LDL +N + T+P L + +L S+N++ N
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Score = 36.4 bits (85), Expect = 0.004
Identities = 17/114 (14%), Positives = 36/114 (31%), Gaps = 23/114 (20%)
Query: 57 QVLDLSSNNIN-VLQKEIFLQMGITN-IQKLYLRKCKL------EFVDDRAFRGVTNMDE 108
+ N I+ + + + + + +L F N+
Sbjct: 152 VGITFDGNRISGAIPDSYG---SFSKLFTSMTISRNRLTGKIPPTF-------ANLNLAF 201
Query: 109 LDLSDNLLS-TVPSLIY-IPYLKSINLAHNPIH-QISSYSFQSTPGIRYIDMSN 159
+DLS N+L L + I+LA N + + + + +D+ N
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRN 253
Score = 29.8 bits (68), Expect = 0.52
Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 40/137 (29%)
Query: 47 TIPEGI----DLDTQVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101
IP I L L ++ N++ + + I + L L
Sbjct: 92 PIPPAIAKLTQL--HYLYITHTNVSGAIPDFL---SQIKTLVTLDFSYNALS-------- 138
Query: 102 GV--------TNMDELDLSDNLLS-TVP-SLIYIPYL-KSINLAHN----PI-HQISSYS 145
G N+ + N +S +P S L S+ ++ N I ++ +
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198
Query: 146 FQSTPGIRYIDMSNCQI 162
++D+S +
Sbjct: 199 LA------FVDLSRNML 209
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 39.9 bits (94), Expect = 3e-04
Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 18/122 (14%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD----DRAFRGVTNMDELDLS 112
Q LD+ ++ + L + Q + L C L A R + EL+L
Sbjct: 6 QSLDIQCEELSDARWAELLP-LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64
Query: 113 DNLL--STVPSLIYI-----PYLKSINLAHNPI-----HQISSYSFQSTPGIRYIDMSNC 160
N L V ++ ++ ++L + + +SS + ++ P ++ + +S+
Sbjct: 65 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDN 123
Query: 161 QI 162
+
Sbjct: 124 LL 125
Score = 36.5 bits (85), Expect = 0.005
Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 26/128 (20%)
Query: 57 QVLDLSSNNIN-----VLQKEIFLQMGITNIQKLYLRKCKLEFVDDR----AFRGVTNMD 107
L+L SN + + + LQ IQKL L+ C L R + +
Sbjct: 59 AELNLRSNELGDVGVHCVLQG--LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116
Query: 108 ELDLSDNLLSTVPSLIYI--------PYLKSINLAHNPI-----HQISSYSFQSTPGIRY 154
EL LSDNLL L + L+ + L + + ++S ++ P +
Sbjct: 117 ELHLSDNLLGD-AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS-VLRAKPDFKE 174
Query: 155 IDMSNCQI 162
+ +SN I
Sbjct: 175 LTVSNNDI 182
Score = 34.6 bits (80), Expect = 0.017
Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 18/125 (14%)
Query: 57 QVLDLSSNNIN---VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF----RGVTNMDEL 109
Q L LS N + + L ++KL L C L R + EL
Sbjct: 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 175
Query: 110 DLSDNLLSTV------PSLIYIPY-LKSINLAHNPIHQIS----SYSFQSTPGIRYIDMS 158
+S+N ++ L P L+++ L + + S +R + +
Sbjct: 176 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235
Query: 159 NCQIH 163
+ ++
Sbjct: 236 SNKLG 240
Score = 32.2 bits (74), Expect = 0.11
Identities = 8/66 (12%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 104 TNMDELDLSDNLLS--TVPSLI-YIPYLKSINLAHNPIHQIS----SYSFQSTPGIRYID 156
++ LD+ LS L+ + + + L + + S + + P + ++
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 157 MSNCQI 162
+ + ++
Sbjct: 63 LRSNEL 68
Score = 30.7 bits (70), Expect = 0.36
Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 34/132 (25%)
Query: 57 QVLDLSSNNI-----NVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV----TNMD 107
+ L L+ N + +L + L ++ L+++ C F V +
Sbjct: 287 KELSLAGNELGDEGARLLCET--LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL 344
Query: 108 ELDLSDN------------LLSTVPSLIYIPYLKSINLAHNPI-----HQISSYSFQSTP 150
EL +S+N L S+ L+ + LA + +++ + +
Sbjct: 345 ELQISNNRLEDAGVRELCQGLGQPGSV-----LRVLWLADCDVSDSSCSSLAA-TLLANH 398
Query: 151 GIRYIDMSNCQI 162
+R +D+SN +
Sbjct: 399 SLRELDLSNNCL 410
Score = 28.4 bits (64), Expect = 1.7
Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 22/126 (17%)
Query: 57 QVLDLSSNNI-----NVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV----TNMD 107
+ L L SN + L L + ++ L++ +C + V ++
Sbjct: 230 RELALGSNKLGDVGMAELCPG--LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287
Query: 108 ELDLSDNLL--STVPSLI-----YIPYLKSINLAHNPIHQISSYSF----QSTPGIRYID 156
EL L+ N L L L+S+ + F + +
Sbjct: 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347
Query: 157 MSNCQI 162
+SN ++
Sbjct: 348 ISNNRL 353
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 37.4 bits (87), Expect = 0.002
Identities = 20/137 (14%), Positives = 38/137 (27%), Gaps = 31/137 (22%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGI--------TNIQKLYLRKCKLEFVDDRAF----RGVT 104
++ + S ++ EI + + + + L T
Sbjct: 63 EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122
Query: 105 NMDELDLSDNLLS---------------TVPSLIYIPYLKSINLAHNPIHQIS----SYS 145
++ L L +N L P L+SI N + S + +
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182
Query: 146 FQSTPGIRYIDMSNCQI 162
FQS + + M I
Sbjct: 183 FQSHRLLHTVKMVQNGI 199
Score = 33.9 bits (78), Expect = 0.025
Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 24/128 (18%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGI---TNIQKLYLRKCKLEFVDD------RAFRGVTNMD 107
+ + N I E L G+ ++ L L+ A + N+
Sbjct: 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT--HLGSSALAIALKSWPNLR 247
Query: 108 ELDLSDNL--------LSTVPSLIYIPYLKSINLAHNPIHQ-----ISSYSFQSTPGIRY 154
EL L+D L + S + L+++ L +N I + + + P + +
Sbjct: 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307
Query: 155 IDMSNCQI 162
++++ +
Sbjct: 308 LELNGNRF 315
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 35.0 bits (80), Expect = 0.010
Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 15/122 (12%)
Query: 53 DLDTQVLDLSS--NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110
D Q LDL ++ +++ + I + + + LR + + L+
Sbjct: 126 DGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENI---------PELLSLN 176
Query: 111 LSDNLLSTVPSLIYI----PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
LS+N L + + I P LK +NL+ N + + + + + +
Sbjct: 177 LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTF 236
Query: 167 SE 168
+
Sbjct: 237 RD 238
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 33.9 bits (78), Expect = 0.025
Identities = 15/121 (12%), Positives = 42/121 (34%), Gaps = 19/121 (15%)
Query: 59 LDLSSNNINVLQ-KEIF--LQMGITNIQKLYLRKCKLEFVDDRAF-RGVTNMDELDLSDN 114
L+L+ + ++ + L G + ++ L C+L+ R +L L N
Sbjct: 77 LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136
Query: 115 LLSTVPSLIYI--------PYLKSINLAHNPI-----HQISSYSFQSTPGIRYIDMSNCQ 161
L + + + ++ L++NP+ + + ++ + +
Sbjct: 137 SLG-PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTG 194
Query: 162 I 162
+
Sbjct: 195 L 195
Score = 33.5 bits (77), Expect = 0.034
Identities = 16/122 (13%), Positives = 42/122 (34%), Gaps = 18/122 (14%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV-----TNMDELDL 111
++L+S ++ L + +KL L+ L + R + + L L
Sbjct: 104 DEVNLASCQLDPAGLRTLLPV-FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRL 162
Query: 112 SDNLLSTV------PSLIYIPYLKSINLAHNPI-----HQISSYSFQSTPGIRYIDMSNC 160
S+N L+ L + ++L H + +++ ++ ++++
Sbjct: 163 SNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYN 221
Query: 161 QI 162
Sbjct: 222 GA 223
Score = 27.0 bits (60), Expect = 5.3
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 30/103 (29%)
Query: 57 QVLDLSSNNI---------NVLQKEIFLQMGITNIQKLYLRKCKLEFVDD------RAFR 101
L LS+N + L T++ L L L D+
Sbjct: 158 TTLRLSNNPLTAAGVAVLMEGLAGN-------TSVTHLSLLHTGLG--DEGLELLAAQLD 208
Query: 102 GVTNMDELDLSDNLLSTV------PSLIYIPYLKSINLAHNPI 138
+ EL+++ N + P L+ ++L N +
Sbjct: 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 33.1 bits (76), Expect = 0.046
Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 20/126 (15%)
Query: 57 QVLDLSSNNINVLQ-KEIF--LQMGITNIQKLYLRKCKLEFVDDRAFRGV-----TNMDE 108
LDLS NN+ + E+ ++ L L L F + + N+
Sbjct: 25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84
Query: 109 LDLSDNLLST------VPSLIYIPY-LKSINLAHNPI-----HQISSYSFQSTPGIRYID 156
L+LS N LS V +L IP+ + ++L N + I ++
Sbjct: 85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLN 144
Query: 157 MSNCQI 162
+ +
Sbjct: 145 LRGNDL 150
Score = 30.1 bits (68), Expect = 0.49
Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 20/126 (15%)
Query: 57 QVLDLSSNNINVLQKEIF---LQMGITNIQKLYLRKCKLEFVDDRAFRGV-----TNMDE 108
L+LS N++ + L N+ L L L + +
Sbjct: 54 TSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITV 113
Query: 109 LDLSDNLLSTV------PSLIYIP-YLKSINLAHNPIHQIS----SYSFQSTP-GIRYID 156
LDL N S+ + +P + S+NL N + S + P + ++
Sbjct: 114 LDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173
Query: 157 MSNCQI 162
+ +
Sbjct: 174 LRGNNL 179
Score = 28.9 bits (65), Expect = 1.3
Identities = 17/121 (14%), Positives = 37/121 (30%), Gaps = 36/121 (29%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNI-QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
LDLS+N + + + + L+L N
Sbjct: 199 TSLDLSANLLGL--------KSYAELAYIFSSIPNHVV--------------SLNLCLNC 236
Query: 116 LSTV------PSLIYIPYLKSINLAHNPIHQIS-------SYSFQSTPGIRYIDMSNCQI 162
L + +L+++ L ++ + +S +F + I +D + +I
Sbjct: 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296
Query: 163 H 163
H
Sbjct: 297 H 297
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 33.4 bits (76), Expect = 0.047
Identities = 15/124 (12%), Positives = 40/124 (32%), Gaps = 14/124 (11%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD---RAFRGVTNMDELDLSD 113
+ + ++ L + + +++ L L KC F D + L + +
Sbjct: 115 KSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS-GFTTDGLLSIVTHCRKIKTLLMEE 173
Query: 114 NLLST--VPSLIYI----PYLKSINLAHNPIHQISSYS----FQSTPGIRYIDMSNCQIH 163
+ S L + L+ +N +IS ++ + + + + +I
Sbjct: 174 SSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233
Query: 164 TIYS 167
+
Sbjct: 234 ELVG 237
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 32.5 bits (74), Expect = 0.053
Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 14/91 (15%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM-------DEL 109
Q +D + + I G+ ++K+ L KC +++D ++ + E+
Sbjct: 64 QAIDATDSCIM--SIGFDHMEGLQYVEKIRLCKCH--YIEDGCLERLSQLENLQKSMLEM 119
Query: 110 DLSDNLLSTVPSLIYI---PYLKSINLAHNP 137
++ T +I + LK + L+ P
Sbjct: 120 EIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 31.0 bits (70), Expect = 0.25
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGV----TNMDELDLSD-NLLSTVPSLIYI----PYLKS 130
N+++L LR+ ++ V T++ L++S + +L + P LKS
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215
Query: 131 INLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT 164
+ L + + Q P + +
Sbjct: 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEV 249
Score = 27.2 bits (60), Expect = 5.2
Identities = 13/97 (13%), Positives = 36/97 (37%), Gaps = 14/97 (14%)
Query: 75 LQMGITNIQKLYLRKCKLEFVDDRAF----RGVTNMDELDLSDNLLSTVPSLIYI----P 126
+ ++++L L + D+ F M+ L ++ + + ++
Sbjct: 427 IVEHCKDLRRLSLSGL----LTDKVFEYIGTYAKKMEMLSVAFAGD-SDLGMHHVLSGCD 481
Query: 127 YLKSINLAHNPIHQISSYSFQST-PGIRYIDMSNCQI 162
L+ + + P + + S +R + MS+C +
Sbjct: 482 SLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 1.0
Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 27/125 (21%)
Query: 53 DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA---FRGVTNMDEL 109
+L ++L + K++ + + L + D +
Sbjct: 263 NLSCKILLTTRF------KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 110 DLSDNLLSTVP---SLI---------YIPYLKSINLAHNPIHQI--SSYSFQSTPGIR-- 153
DL +L+T P S+I K +N + + I SS + R
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN--CDKLTTIIESSLNVLEPAEYRKM 374
Query: 154 YIDMS 158
+ +S
Sbjct: 375 FDRLS 379
Score = 28.7 bits (63), Expect = 1.6
Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 20/106 (18%)
Query: 53 DLDTQ-VLDLSSNNINVLQKEIF---LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDE 108
+ D + V D+ + +L KE + + + + V E
Sbjct: 32 NFDCKDVQDMPKS---ILSKEEIDHIIMSK-DAVSGTLRL---FWTLLSKQEEMVQKFVE 84
Query: 109 LDLSDN---LLSTV------PSLIYIPYLKSINLAHNPIHQISSYS 145
L N L+S + PS++ Y++ + +N + Y+
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 28.7 bits (64), Expect = 1.5
Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 18/118 (15%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV----TNMDELDLS 112
Q L L ++ + +N+ +L L C + A + + + +DEL+LS
Sbjct: 121 QNLSLEGLRLSDPIVNTLAKN--SNLVRLNLSGCS--GFSEFALQTLLSSCSRLDELNLS 176
Query: 113 DNLLSTVPSLIYI-----PYLKSINLAHNPIHQISSYSF----QSTPGIRYIDMSNCQ 161
T + + +NL+ + + P + ++D+S+
Sbjct: 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYR-KNLQKSDLSTLVRRCPNLVHLDLSDSV 233
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 28.6 bits (64), Expect = 1.6
Identities = 18/128 (14%), Positives = 42/128 (32%), Gaps = 23/128 (17%)
Query: 60 DLSSNNINVLQKEIF------LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113
N ++ ++ ++ + N+ L + K + D F + ++ L
Sbjct: 200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH 259
Query: 114 NLLSTVPSLIYIPY---------LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT 164
+L I ++ L + + I +F +RY+ + +I T
Sbjct: 260 -------NLKTIGQRVFSNCGRLAGTLELPAS-VTAIEFGAFMGCDNLRYVLATGDKITT 311
Query: 165 IYSEAFYG 172
+ E F
Sbjct: 312 LGDELFGN 319
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 27.2 bits (59), Expect = 3.7
Identities = 8/66 (12%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
Query: 57 QVLDLSSNNI-NVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF----RGVTNMDELDL 111
+ L + NV+ + + ++ + + L R + ++ +++
Sbjct: 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314
Query: 112 SDNLLS 117
N LS
Sbjct: 315 KYNYLS 320
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein,
BIG3 domain, LRR domain, STRU genomics; 2.05A
{Bacteroides ovatus} PDB: 4fd0_A
Length = 401
Score = 27.0 bits (60), Expect = 4.9
Identities = 12/93 (12%), Positives = 32/93 (34%), Gaps = 20/93 (21%)
Query: 92 LEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPY-------LKSINLAHNPIHQISSY 144
L+ + +AF + + +++ + ++ I + ++ L N + I+S
Sbjct: 214 LKEIGSQAFLKTSQLKTIEIPE-------NVSTIGQEAFRESGITTVKL-PNGVTNIASR 265
Query: 145 SFQSTPGIRYIDMSN-----CQIHTIYSEAFYG 172
+F P + + I+ G
Sbjct: 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG 298
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
hypothetical protein; 2.05A {Sinorhizobium meliloti}
Length = 218
Score = 26.6 bits (59), Expect = 5.8
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 24 PLGCSCKWKAGK 35
+GC+ KW AG
Sbjct: 198 SIGCNIKWTAGN 209
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.414
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,062,882
Number of extensions: 167994
Number of successful extensions: 2065
Number of sequences better than 10.0: 1
Number of HSP's gapped: 711
Number of HSP's successfully gapped: 414
Length of query: 207
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 118
Effective length of database: 4,216,824
Effective search space: 497585232
Effective search space used: 497585232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.8 bits)