RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14766
(207 letters)
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 81.6 bits (200), Expect = 3e-19
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 7/144 (4%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
CP C C R V+C D +P+ + DT +LDL +N I ++ F + N
Sbjct: 3 VCPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNL--KN 56
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQI 141
+ L L K+ + AF + ++ L LS N L +P + + + + N I ++
Sbjct: 57 LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL-QELRVHENEITKV 115
Query: 142 SSYSFQSTPGIRYIDMSNCQIHTI 165
F + +++ + +
Sbjct: 116 RKSVFNGLNQMIVVELGTNPLKSS 139
Score = 33.1 bits (74), Expect = 0.020
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGI----TNIQKLYLRKCKLEF--VDDRAFRGVTNMDELD 110
QV+ L +NNI+ + F G + + L +++ + FR V +
Sbjct: 245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 304
Query: 111 L 111
L
Sbjct: 305 L 305
Score = 31.5 bits (70), Expect = 0.055
Identities = 21/147 (14%), Positives = 39/147 (26%), Gaps = 31/147 (21%)
Query: 42 DRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR--- 98
D N TIP+G+ L L N I + + L
Sbjct: 159 DTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 218
Query: 99 ------------------AFRGVTNMDELDLSDNLLSTVPSLIYIPY--------LKSIN 132
+ + L +N +S + S + P ++
Sbjct: 219 PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 278
Query: 133 LAHNPIH--QISSYSFQSTPGIRYIDM 157
L NP+ +I +F+ + +
Sbjct: 279 LFSNPVQYWEIQPSTFRCVYVRAAVQL 305
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 62.9 bits (151), Expect = 1e-12
Identities = 34/208 (16%), Positives = 65/208 (31%), Gaps = 26/208 (12%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIF-------- 74
CP C C + K T C + +P GI +Q + L N I+ + F
Sbjct: 2 CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTI 60
Query: 75 ---------------LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
Q +L VD F G+ + L L L +
Sbjct: 61 LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120
Query: 120 PSLIYIPY--LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIR 177
++ L+ + L N + + +F+ + ++ + +I ++ AF G +
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180
Query: 178 RPTITGQWKPRQNEDSDAQLAKGRAHDF 205
R + + + L +
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYL 208
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 56.6 bits (135), Expect = 2e-10
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C A V C RN +P + DT +L LS N + + T + +L
Sbjct: 4 CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPY--TRLTQLN 61
Query: 87 LRKCK 91
L + +
Sbjct: 62 LDRAE 66
Score = 39.7 bits (91), Expect = 9e-05
Identities = 7/64 (10%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 103 VTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
V + E++ L+ +P + ++L+ N ++ S + + +++ ++
Sbjct: 9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67
Query: 163 HTIY 166
+
Sbjct: 68 TKLQ 71
Score = 33.9 bits (76), Expect = 0.009
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 75 LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINL 133
L ++KL L L + G+ N+D L L +N L T+P + L L
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202
Query: 134 AHNPIH 139
NP
Sbjct: 203 HGNPWL 208
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 54.8 bits (130), Expect = 4e-10
Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 5/146 (3%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C+ TV+C R IP I L T L L+ N + + + +
Sbjct: 2 CPAMCHCEG----TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLV 57
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP-SLIYIPYLKSINLAHNPIHQI 141
+ R + + + + + + LK++NL N I +
Sbjct: 58 KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117
Query: 142 SSYSFQSTPGIRYIDMSNCQIHTIYS 167
SF+ + +++++ +
Sbjct: 118 MPGSFEHLNSLTSLNLASNPFNCNCH 143
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 48.8 bits (115), Expect = 1e-07
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L NNI+ + + +T +Q+L+ K+ V + +TN++ L N +
Sbjct: 310 TYLTLYFNNISDI---SPVS-SLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQI 363
Query: 117 STVPSLIYIPYLKSINLAHN 136
S + L + + + L
Sbjct: 364 SDLTPLANLTRITQLGLNDQ 383
Score = 43.5 bits (101), Expect = 7e-06
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 76 QMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAH 135
+ N+ L L + D +T + L ++N +S V SL + + ++ H
Sbjct: 303 ISNLKNLTYLTLYFNNIS--DISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGH 360
Query: 136 NPIHQISSYSFQSTPGIRYIDMSN 159
N I ++ + I + +++
Sbjct: 361 NQISDLT--PLANLTRITQLGLND 382
Score = 41.9 bits (97), Expect = 2e-05
Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 8/109 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L +N I+ + L + + D + N+ L L N +
Sbjct: 266 TELKLGANQISNISPLAGLTALTNLEL------NENQLEDISPISNLKNLTYLTLYFNNI 319
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
S + + + L+ + A+N + +SS + I ++ + QI +
Sbjct: 320 SDISPVSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDL 366
Score = 39.2 bits (90), Expect = 2e-04
Identities = 23/110 (20%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L ++N I+ +I +TN+ +L L +L+ + +TN+ +LDL++N +
Sbjct: 200 ESLIATNNQIS----DITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI 253
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
S + L + L + L N I IS + + ++ + + +
Sbjct: 254 SNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 303
Score = 34.6 bits (78), Expect = 0.006
Identities = 15/108 (13%), Positives = 39/108 (36%), Gaps = 6/108 (5%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
L N+ + Q + + L + ++ +D + N+ +++ S+N L+
Sbjct: 27 TVLGKTNVT----DTVSQTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTD 80
Query: 119 VPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
+ L + L I + +N I I+ + + + +
Sbjct: 81 ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 128
Score = 33.4 bits (75), Expect = 0.016
Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 4/115 (3%)
Query: 71 KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKS 130
+IF + K L K + D + + + L + ++ + Y+ L
Sbjct: 13 NQIFTDTALAEKMKTVLGKTNVT--DTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQ 70
Query: 131 INLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQW 185
IN ++N + I+ ++ + I M+N QI I A +
Sbjct: 71 INFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 123
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 44.5 bits (103), Expect = 2e-06
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 4/64 (6%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C C R C + IP + + L + V+QK F G ++
Sbjct: 6 CHCSN----RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEIS 61
Query: 87 LRKC 90
Sbjct: 62 QNDV 65
Score = 30.3 bits (66), Expect = 0.14
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 126 PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQ 161
++++ IH + SY ++ +R N +
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 30.3 bits (66), Expect = 0.15
Identities = 5/45 (11%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSL 122
G + L + + ++ + + + L +P+L
Sbjct: 199 GASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTL 241
Score = 29.9 bits (65), Expect = 0.19
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 90 CKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHN 136
LE + + F G + LD+S + ++PS L + L++ + +
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235
Score = 26.0 bits (55), Expect = 3.6
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK 91
+LD+S I+ L + ++ K
Sbjct: 204 VILDISRTRIHSLPSYGL--ENLKKLRARSTYNLK 236
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 41.2 bits (96), Expect = 1e-05
Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VL L+ ++ VL Q+ + L L +L + A + ++ L SDN L
Sbjct: 1 RVLHLAHKDLTVL--CHLEQL--LLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNAL 55
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTI 165
V + +P L+ + L +N + Q ++ S P + +++ +
Sbjct: 56 ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
Score = 38.9 bits (90), Expect = 6e-05
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 8/91 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LDLS N + L + + +Q ++ + + EL L +N L
Sbjct: 23 THLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-----GVANLPRLQELLLCNNRL 77
Query: 117 STVPSLIYI---PYLKSINLAHNPIHQISSY 144
++ + P L +NL N + Q
Sbjct: 78 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108
Score = 34.3 bits (78), Expect = 0.003
Identities = 9/63 (14%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 109 LDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
L L+ L+ + L + + ++L+HN + + + + + + S+ + +
Sbjct: 3 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGV 61
Query: 169 AFY 171
A
Sbjct: 62 ANL 64
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 42.1 bits (97), Expect = 2e-05
Identities = 10/80 (12%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Query: 86 YLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYS 145
+++EL++S+N L +P+L P L+ + + N + ++
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVPE-- 321
Query: 146 FQSTPGIRYIDMSNCQIHTI 165
++ + + +
Sbjct: 322 --LPQNLKQLHVEYNPLREF 339
Score = 40.6 bits (93), Expect = 7e-05
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 10/67 (14%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L++S+N + L +++L L V + N+ +L + N L
Sbjct: 287 EELNVSNNKLIELPALP------PRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPL 336
Query: 117 STVPSLI 123
P +
Sbjct: 337 REFPDIP 343
Score = 38.7 bits (88), Expect = 3e-04
Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
EL+L++ LS++P L P+L+S+ + N + ++ ++ + + N +
Sbjct: 38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPELPQS----LKSLLVDNNNLK 91
Query: 164 TIY 166
+
Sbjct: 92 ALS 94
Score = 33.6 bits (75), Expect = 0.011
Identities = 24/143 (16%), Positives = 48/143 (33%), Gaps = 47/143 (32%)
Query: 24 PLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQ 83
P + A R +C+DR L+L++ ++ L +
Sbjct: 19 PGNGEQREMAVSRLRDCLDRQ-----------AHELELNNLGLSSLPELP---------- 57
Query: 84 KLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISS 143
+++ L S N L+ +P L LKS+ + +N + +
Sbjct: 58 --------------------PHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKAL-- 93
Query: 144 YSFQSTPGIRYIDMSNCQIHTIY 166
P + Y+ +SN Q+ +
Sbjct: 94 --SDLPPLLEYLGVSNNQLEKLP 114
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 40.2 bits (92), Expect = 4e-05
Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 9/121 (7%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVL--DLSSNN-INVLQKEIFLQMGI 79
CP C G + C + + + + + L+ +
Sbjct: 1 CPDACCP---HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGL-- 55
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIP-YLKSINLAHNPI 138
++ L + K L FV AF + L+LS N L ++ L+ + L+ NP+
Sbjct: 56 GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115
Query: 139 H 139
H
Sbjct: 116 H 116
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 38.0 bits (87), Expect = 2e-04
Identities = 18/113 (15%), Positives = 44/113 (38%), Gaps = 1/113 (0%)
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIH 139
++L LR K+ +++ + D +D SDN + + + LK++ + +N I
Sbjct: 18 VRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRIC 76
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQNED 192
+I Q+ P + + ++N + + S + + +
Sbjct: 77 RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129
Score = 36.5 bits (83), Expect = 9e-04
Identities = 8/65 (12%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 100 FRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMS 158
+ ELDL + + +L + +I+ + N I ++ + ++ +
Sbjct: 14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN 73
Query: 159 NCQIH 163
Sbjct: 74 RICRI 78
Score = 33.4 bits (75), Expect = 0.009
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 111 LSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
L+ L+ + ++L I I + + ID S+ +I +
Sbjct: 3 LTAELIEQAAQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL 56
Score = 28.8 bits (63), Expect = 0.36
Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 10/108 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+D S N I L L ++ L + ++ + + + + ++ EL L++N L
Sbjct: 44 DAIDFSDNEIRKLDGFPLL----RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 99
Query: 117 STVPSLIYIPYLKSI------NLAHNPIHQISSYSFQSTPGIRYIDMS 158
+ L + LKS+ Y P +R +D
Sbjct: 100 VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 37.3 bits (84), Expect = 0.001
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR----AFRGVTNMDEL 109
LD Q LD+ ++ + L + Q + L C L + A R + EL
Sbjct: 2 LDIQSLDIQCEELSDARWAELLP-LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 110 DLSDNLLSTVPSLIYIPYLKSINL 133
+L N L V + L++ +
Sbjct: 61 NLRSNELGDVGVHCVLQGLQTPSC 84
Score = 34.6 bits (77), Expect = 0.008
Identities = 8/65 (12%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 105 NMDELDLSDNLLS--TVPSLI-YIPYLKSINLAHNPIHQIS----SYSFQSTPGIRYIDM 157
++ LD+ LS L+ + + + L + + S + + P + +++
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 158 SNCQI 162
+ ++
Sbjct: 63 RSNEL 67
Score = 27.6 bits (59), Expect = 1.1
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQM--GITNIQKLYLRKCKLEFVDDRAFRGV-----TNMDEL 109
+VL L+ +++ ++++L L L +++L
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431
Query: 110 DLSDNLLS 117
L D S
Sbjct: 432 VLYDIYWS 439
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 35.8 bits (81), Expect = 0.002
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 100 FRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN 159
++ + L DN +S + L +P L ++L +N I +S +T + + ++N
Sbjct: 169 LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN 226
Score = 35.4 bits (80), Expect = 0.003
Identities = 13/96 (13%), Positives = 31/96 (32%), Gaps = 2/96 (2%)
Query: 71 KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKS 130
IF + N K+ K + D + + L ++T+ + Y+ L
Sbjct: 10 NVIFPDPALANAIKIAAGKSNVT--DTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIG 67
Query: 131 INLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
+ L N I ++ + + + + +
Sbjct: 68 LELKDNQITDLAPLKNLTKITELELSGNPLKNVSAI 103
Score = 32.7 bits (73), Expect = 0.023
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 99 AFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAH 135
+ N+ E+ L +N +S V L L + L +
Sbjct: 190 PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 34.3 bits (77), Expect = 0.007
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 76 QMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS-TVPSLIYIPYLKSINLA 134
N+ L LR ++ + + + L++S N L +P + A
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299
Query: 135 HNP 137
+N
Sbjct: 300 NNK 302
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 33.1 bits (74), Expect = 0.014
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 99 AFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINL 133
G+T + L LS N +S + +L + L + L
Sbjct: 173 PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207
Score = 33.1 bits (74), Expect = 0.015
Identities = 16/96 (16%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 71 KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKS 130
K+IF K L+K + D + ++D++ +++ + +V + Y+P +
Sbjct: 15 KQIFSDDAFAETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTK 72
Query: 131 INLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
+ L N + I + G ++D + + +
Sbjct: 73 LFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSL 108
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 32.5 bits (73), Expect = 0.016
Identities = 15/65 (23%), Positives = 26/65 (40%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L+LS+N + L + N++ L L +L+ + ++EL L N L
Sbjct: 68 LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127
Query: 117 STVPS 121
S
Sbjct: 128 SDTFR 132
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 31.2 bits (69), Expect = 0.070
Identities = 18/137 (13%), Positives = 50/137 (36%), Gaps = 7/137 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q LDL+ N L ++ ++ + + ++ F + +DLS++++
Sbjct: 3 QTLDLTGKN---LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSP-FRVQHMDLSNSVI 58
Query: 117 S--TVPSLI-YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGS 173
T+ ++ L++++L + + + +++S C + ++ S
Sbjct: 59 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118
Query: 174 DQIRRPTITGQWKPRQN 190
R + W
Sbjct: 119 SCSRLDELNLSWCFDFT 135
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 30.4 bits (67), Expect = 0.12
Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 15/120 (12%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
TI + I + + + + +++ L I I+K+ D +
Sbjct: 6 TIKDAIRIFEERKSVVATEA----EKVELHGMIPPIEKM-----------DATLSTLKAC 50
Query: 107 DELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
L LS N + + SL + L+ ++L N I +I + + N
Sbjct: 51 KHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG 110
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 28.9 bits (63), Expect = 0.30
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 93 EFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSI 131
+ D + +T ++ LD+S N +S + L + L+S+
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 199
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 29.1 bits (63), Expect = 0.35
Identities = 11/93 (11%), Positives = 29/93 (31%), Gaps = 6/93 (6%)
Query: 104 TNMDELDLSDNLLSTV------PSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDM 157
++ E+ LS N + T ++ L+ + ++ ++ + +
Sbjct: 31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 90
Query: 158 SNCQIHTIYSEAFYGSDQIRRPTITGQWKPRQN 190
++HT+ + P I K
Sbjct: 91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123
Score = 25.2 bits (53), Expect = 7.4
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 109 LDLSDNLLSTVPS-LIYIPYLKSINLAHNPIH----QISSYSFQSTPGIRYIDMSNCQIH 163
++ +V + L+ +K I L+ N I + S + S + + S+
Sbjct: 13 DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG 72
Query: 164 TIYSEAF 170
+ E
Sbjct: 73 RVKDEIP 79
Score = 24.8 bits (52), Expect = 8.0
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 11/65 (16%)
Query: 57 QVLDLSSNNINVLQKEIF---LQMGITNIQKLYLRKCKLEFVDD--------RAFRGVTN 105
Q L L N I + + + ++ L L + DD + RG
Sbjct: 276 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGE 335
Query: 106 MDELD 110
+DELD
Sbjct: 336 LDELD 340
>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide
isomerase/thioredoxin TTHA0593 {Thermus thermophilus
[TaxId: 274]}
Length = 187
Score = 26.4 bits (57), Expect = 1.8
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 24 PLGCSCKWKAGK 35
+GC+ KW+ G
Sbjct: 169 AIGCTIKWRPGN 180
>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia
coli [TaxId: 562]}
Length = 391
Score = 25.4 bits (54), Expect = 6.4
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 137 PIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
I + SS F S ++ + Y
Sbjct: 23 VIQRASSLVFDSVEAKKHATRNRANGELFYG 53
>d1fx5a_ b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus), UEA-I
[TaxId: 3902]}
Length = 240
Score = 24.7 bits (53), Expect = 8.1
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQST 149
+L +P + + + S + H++ ++ F ST
Sbjct: 201 DLKEILPEWVSVGFSGSTYIGRQATHEVLNWYFTST 236
>d1v6ia_ b.29.1.1 (A:) Legume lectin {Peanut (Arachis hypogaea)
[TaxId: 3818]}
Length = 232
Score = 24.7 bits (53), Expect = 8.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 109 LDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQST 149
+ +L + +P + + S +L IH I S+SF ST
Sbjct: 188 IAQVVDLKAKLPERVKFGFSASGSLGGRQIHLIRSWSFTST 228
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.414
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 758,820
Number of extensions: 33239
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 67
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.2 bits)