BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14767
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 103/195 (52%), Gaps = 29/195 (14%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
+CP CSC + K V C+ +N +P+GI +T++L+L N I +++ F + +
Sbjct: 34 TCPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHL--RH 89
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPIH 139
++ L L + + ++ AF G+ N++ L+L DN L+T+P + +Y+ LK + L +NPI
Sbjct: 90 LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSE-AFYGID----------------------KI 176
I SY+F P +R +D+ + + SE AF G+ K+
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKL 209
Query: 177 DTLKLNGNKLASLKP 191
D L L+GN L++++P
Sbjct: 210 DELDLSGNHLSAIRP 224
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%)
Query: 33 AGKRTVECIDRNFYTIPEGIDL---DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK 89
A T+E D TIP G + + L L +N I + F + I ++++L L +
Sbjct: 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR--IPSLRRLDLGE 169
Query: 90 CK-LEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQS 148
K L ++ + AF G++N+ L+L+ L +P+L + L ++L+ N + I SFQ
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQG 229
Query: 149 TPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
++ + M QI I AF + + + L N L L
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 101/198 (51%), Gaps = 29/198 (14%)
Query: 19 TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMG 78
T SCP CSC +A + V C R +P I ++T+ L+L N+I V++ + F +
Sbjct: 2 TGTSCPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHL- 58
Query: 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHN 136
+++ L L K + ++ AF G+ +++ L+L DN L+TVP + Y+ L+ + L +N
Sbjct: 59 -RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 137 PIHQISSYSFQSTPGIRYIDMSNC-QIHTIYSEAFYG----------------------I 173
PI I SY+F P +R +D+ ++ I AF G +
Sbjct: 118 PIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTAL 177
Query: 174 DKIDTLKLNGNKLASLKP 191
+++ L+L+GN+L ++P
Sbjct: 178 VRLEELELSGNRLDLIRP 195
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 2/155 (1%)
Query: 37 TVECIDRNFYTIP-EGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEF 94
T+E D T+P + + +++ +L N + + + ++++L L + K LE+
Sbjct: 87 TLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEY 146
Query: 95 VDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRY 154
+ + AF G+ N+ L+L L +P+L + L+ + L+ N + I SFQ +R
Sbjct: 147 ISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 155 IDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
+ + + Q+ TI AF + ++ L L+ N L SL
Sbjct: 207 LWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSL 241
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 54/85 (63%), Gaps = 4/85 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L+LS N +++++ F G+T+++KL+L ++ ++ AF + +++EL+LS N L
Sbjct: 181 EELELSGNRLDLIRPGSF--QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Query: 117 STVPSLIYIPY--LKSINLAHNPIH 139
++P ++ P L+ ++L HNP H
Sbjct: 239 MSLPHDLFTPLHRLERVHLNHNPWH 263
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 101/198 (51%), Gaps = 29/198 (14%)
Query: 19 TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMG 78
T SCP CSC +A + V C R +P I ++T+ L+L N+I V++ + F +
Sbjct: 2 TGTSCPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHL- 58
Query: 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHN 136
+++ L L K + ++ AF G+ +++ L+L DN L+TVP + Y+ L+ + L +N
Sbjct: 59 -RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 137 PIHQISSYSFQSTPGIRYIDMSNC-QIHTIYSEAFYG----------------------I 173
PI I SY+F P +R +D+ ++ I AF G +
Sbjct: 118 PIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTAL 177
Query: 174 DKIDTLKLNGNKLASLKP 191
+++ L+L+GN+L ++P
Sbjct: 178 VRLEELELSGNRLDLIRP 195
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 2/155 (1%)
Query: 37 TVECIDRNFYTIP-EGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEF 94
T+E D T+P + + +++ +L N + + + ++++L L + K LE+
Sbjct: 87 TLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEY 146
Query: 95 VDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRY 154
+ + AF G+ N+ L+L L +P+L + L+ + L+ N + I SFQ +R
Sbjct: 147 ISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 155 IDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
+ + + Q+ TI AF + ++ L L+ N L SL
Sbjct: 207 LWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSL 241
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 54/85 (63%), Gaps = 4/85 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L+LS N +++++ F G+T+++KL+L ++ ++ AF + +++EL+LS N L
Sbjct: 181 EELELSGNRLDLIRPGSF--QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Query: 117 STVPSLIYIPY--LKSINLAHNPIH 139
++P ++ P L+ ++L HNP H
Sbjct: 239 MSLPHDLFTPLHRLERVHLNHNPWH 263
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
+CP CSC + K V C R +P+GI +T+ L+L NNI ++Q + F + +
Sbjct: 45 NCPSVCSCSNQFSK--VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHL--HH 100
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIH 139
++ L L + + ++ AF G+ +++ L+L DN L+ +PS Y+ L+ + L +NPI
Sbjct: 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160
Query: 140 QISSYSFQSTPGIRYIDMSNC-QIHTIYSEAFYGIDKIDTLKL 181
I SY+F P + +D+ ++ I AF G+ + L L
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 2/159 (1%)
Query: 33 AGKRTVECIDRNFYTIPEG-IDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK 91
A T+E D IP G + +++ +L N + + + ++ +L L + K
Sbjct: 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK 182
Query: 92 -LEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTP 150
LE++ + AF G+ N+ L+L + +P+L + L+ + ++ N +I SF
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242
Query: 151 GIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
++ + + N Q+ I AF G+ + L L N L+SL
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 6/176 (3%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
CP C C A R V C + F +PEGI +T++LDL N I L ++ F +
Sbjct: 2 GCPPRCECS--AQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEF--ASFPH 57
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIH 139
+++L L + + V+ AF + N+ L L N L +P ++ + L ++++ N I
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTWS 195
+ Y FQ ++ +++ + + I AF G++ ++ L L L S+ S
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPI 138
N+ L + C L V A R + + L+LS N +ST+ L + L+ I L +
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284
Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLA 187
+ Y+F+ +R +++S Q+ T+ F+ + ++TL L+ N LA
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 105 NMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
N+ L ++ L+ VP L ++ YL+ +NL++NPI I ++ I + Q+
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284
Query: 163 HTIYSEAFYGIDKIDTLKLNGNKLASLK 190
+ AF G++ + L ++GN+L +L+
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLE 312
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+S N I +L +F + N++ L + L ++ RAF G+ ++++L L L++
Sbjct: 109 LDISENKIVILLDYMF--QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166
Query: 119 VP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYGID 174
+P +L ++ L + L H I+ I YSF+ ++ +++S+ + T+ YG++
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 6/166 (3%)
Query: 26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKL 85
GC+C GK+ V+C ++ ++P GI DT+ LDL S + L F G+T + L
Sbjct: 9 GCTCN--EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATF--RGLTKLTWL 64
Query: 86 YLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISS 143
L +L+ + F +T + L L++N L+++P ++ + L + L N + + S
Sbjct: 65 NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124
Query: 144 YSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
F ++ + ++ Q+ +I + AF + + TL L+ N+L S+
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 37 TVECIDRNFYTIPEGI-DLDTQV--LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE 93
T+ + ++P G+ D TQ+ L L N + L +F ++ T +++L L +L+
Sbjct: 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL--TKLKELRLNTNQLQ 144
Query: 94 FVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHN 136
+ AF +TN+ L LS N L +VP + + L++I L N
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 6/166 (3%)
Query: 26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKL 85
GC+C GK+ V+C ++ ++P GI DT+ LDL S + L F G+T + L
Sbjct: 9 GCTCN--EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATF--RGLTKLTWL 64
Query: 86 YLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISS 143
L +L+ + F +T + L L++N L+++P ++ + L + L N + + S
Sbjct: 65 NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124
Query: 144 YSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
F ++ + ++ Q+ +I + AF + + TL L+ N+L S+
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 37 TVECIDRNFYTIPEGI-DLDTQV--LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE 93
T+ + ++P G+ D TQ+ L L N + L +F ++ T +++L L +L+
Sbjct: 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL--TKLKELRLNTNQLQ 144
Query: 94 FVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHN 136
+ AF +TN+ L LS N L +VP + + L++I L N
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 83/175 (47%), Gaps = 6/175 (3%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C + K T C + +P GI +Q + L N I+ + F N+
Sbjct: 1 CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASF--RACRNL 57
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN--LLSTVPSLIY-IPYLKSINLAHNPIH 139
L+L L +D AF G+ +++LDLSDN L S P+ + + L +++L +
Sbjct: 58 TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 117
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW 194
++ F+ ++Y+ + + + + + F + + L L+GN+++S+ R +
Sbjct: 118 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 172
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAH 135
G+ +Q LYL+ L+ + D FR + N+ L L N +S+VP + + L + L
Sbjct: 126 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 185
Query: 136 NPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN 184
N + + ++F+ + + + + + +EA + + L+LN N
Sbjct: 186 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 83/175 (47%), Gaps = 6/175 (3%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C + K T C + +P GI +Q + L N I+ + F N+
Sbjct: 2 CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASF--RACRNL 58
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN--LLSTVPSLIY-IPYLKSINLAHNPIH 139
L+L L +D AF G+ +++LDLSDN L S P+ + + L +++L +
Sbjct: 59 TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW 194
++ F+ ++Y+ + + + + + F + + L L+GN+++S+ R +
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAH 135
G+ +Q LYL+ L+ + D FR + N+ L L N +S+VP + + L + L
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186
Query: 136 NPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN 184
N + + ++F+ + + + + + +EA + + L+LN N
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 10/168 (5%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP CSC + C + ++P GI L+L SN + L +F + +T +
Sbjct: 1 CPSRCSCSGTE----IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDK--LTQL 54
Query: 83 QKLYLRKCKLEFVD--DRAFRGVTNMDELDLSDNLLSTVPS-LIYIPYLKSINLAHNPIH 139
KL L L F ++ G T++ LDLS N + T+ S + + L+ ++ H+ +
Sbjct: 55 TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 114
Query: 140 QISSYS-FQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKL 186
Q+S +S F S + Y+D+S+ ++ F G+ ++ LK+ GN
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 79/170 (46%), Gaps = 6/170 (3%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C + K T C + +P GI +Q + L N I+ + F N+
Sbjct: 1 CPGACVC-YNEPKVTTSCPQQGLQAVPTGIPASSQRIFLHGNRISYVPAASF--QSCRNL 57
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL-LSTVPSLIY--IPYLKSINLAHNPIH 139
L+L L +D AF G+T +++LDLSDN L V + + +L +++L +
Sbjct: 58 TILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQ 117
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
++ F+ ++Y+ + + + + F + + L L+GN++ S+
Sbjct: 118 ELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSV 167
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAH 135
G+ +Q LYL+ L+ + D FR + N+ L L N + +VP + + L + L
Sbjct: 126 GLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQ 185
Query: 136 NPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN 184
N + ++ ++F+ + + + + + +E + + L+LN N
Sbjct: 186 NHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 11/160 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP CSC TVEC + ++P GI T LDL +N++ L +F ++ T++
Sbjct: 1 CPSRCSCS----GTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDEL--TSL 54
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQ 140
+LYL KL+ + + F +T++ L+LS N L ++P+ ++ + LK + L N +
Sbjct: 55 TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS 114
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLK 180
+ F ++ + + Q+ ++ F D++ +L+
Sbjct: 115 LPDGVFDKLTQLKDLRLYQNQLKSVPDGVF---DRLTSLQ 151
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 26/184 (14%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIF------------ 74
CSC K +V+C + IP I DT+ LDL SN ++ L + F
Sbjct: 12 CSCN--NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLN 69
Query: 75 ------LQMGI----TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY 124
L GI N++ L++ KL+ + F + N+ EL L N L ++P ++
Sbjct: 70 DNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF 129
Query: 125 --IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLN 182
+ L ++L +N + + F ++ + + N Q+ + AF + ++ TLKL+
Sbjct: 130 DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189
Query: 183 GNKL 186
N+L
Sbjct: 190 NNQL 193
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 105 NMDELDLSDNLLSTVPSLIYIPY-LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
N + +D S L+ +PS IP K ++L N + + S +F +R + +++ ++
Sbjct: 17 NKNSVDCSSKKLTAIPS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74
Query: 164 TIYSEAFYGIDKIDTLKLNGNKLASL 189
T+ + F + ++TL + NKL +L
Sbjct: 75 TLPAGIFKELKNLETLWVTDNKLQAL 100
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 18/181 (9%)
Query: 15 LASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIF 74
L A CP GC C R V+C D +P+ I DT +LDL +N+I+ L+K+ F
Sbjct: 19 LPPTYSAMCPFGCHCHL----RVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDF 74
Query: 75 LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKS---- 130
G+ ++ L L K+ + ++AF + + +L +S N L +P P L S
Sbjct: 75 --KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP-----PNLPSSLVE 127
Query: 131 INLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE--AFYGIDKIDTLKLNGNKLAS 188
+ + N I ++ F + I+M + E AF G+ K++ L+++ KL
Sbjct: 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186
Query: 189 L 189
+
Sbjct: 187 I 187
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 7/165 (4%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
+CP C C+ TV+C ++ IPE I T L L++N VL+ + +
Sbjct: 4 ACPEKCRCEGT----TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKK-LPQ 58
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIH 139
++K+ K+ +++ AF G + ++E+ L+ N L V ++ + LK++ L N I
Sbjct: 59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN 184
+ + SF +R + + + QI T+ AF + + TL L N
Sbjct: 119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 10/181 (5%)
Query: 14 LLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEI 73
L + + SCP C C + C + +P+ + T +LDLS NN++ L+ E
Sbjct: 3 LASGRSVVSCPANCLC----ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAE- 57
Query: 74 FLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI 131
+ +TN+ L L L F+ AF V N+ LDLS N L T+ ++ + L+ +
Sbjct: 58 WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117
Query: 132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDT---LKLNGNKLAS 188
L +N I + +F+ ++ + +S QI E +K+ L L+ NKL
Sbjct: 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177
Query: 189 L 189
L
Sbjct: 178 L 178
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
A CP CSC + V C + ++P GI D Q L L++N I L+ +F +
Sbjct: 4 AGCPSQCSCD----QTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHL--V 57
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
N+Q+LY KL + F +T + +LDL+DN L ++P + + L I L +NP
Sbjct: 58 NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 9/166 (5%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
A+CP CSC TV+C + ++P GI + Q+L L N I L+ +F +
Sbjct: 11 AACPSQCSCS----GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVF--DSLI 64
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPI 138
N+++LYL +L + F +T + LDL N L+ +PS ++ + +LK + + N +
Sbjct: 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN 184
++ + + ++ + Q+ +I AF + + L GN
Sbjct: 125 TELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 113 DNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
D LS VP I K+I+L+ NP+ + SYSF + ++++D+S C+I TI +A++G
Sbjct: 15 DQKLSKVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG 73
Query: 173 IDKIDTLKLNGNKLASLKPRTWS 195
+ + L L GN + S P ++S
Sbjct: 74 LHHLSNLILTGNPIQSFSPGSFS 96
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 79/157 (50%), Gaps = 31/157 (19%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C+D+ +P+ I T+ +DLS N + +L+ F + +Q L L +C++E ++
Sbjct: 10 TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSF--SNFSELQWLDLSRCEIETIE 67
Query: 97 DRAFRGVTNMDELDLSDNL-----------LSTVPSLIYIP---------------YLKS 130
D+A+ G+ ++ L L+ N L+++ +L+ + LK
Sbjct: 68 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 127
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTI 165
+N+AHN IH ++ +Y F + + ++D+S I TI
Sbjct: 128 LNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 163
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 7/132 (5%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD-RAFRGVTNMDELDLS--DNL 115
LDLS N ++ MG+ +Q L + L+ V + AF + + LD+S +
Sbjct: 376 LDLSFNGAIIMSANF---MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 432
Query: 116 LSTVPSLIYIPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGID 174
+ + + L ++ +A N + S F +T + ++D+S CQ+ I F +
Sbjct: 433 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 492
Query: 175 KIDTLKLNGNKL 186
++ L ++ N L
Sbjct: 493 RLQLLNMSHNNL 504
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 23/104 (22%)
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQ 140
N+ ++ CKL F +TN+ +DLS N + T+ ++ + +L+ NP
Sbjct: 129 NVAHNFIHSCKLP----AYFSNLTNLVHVDLSYNYIQTI-TVNDLQFLR-----ENPQVN 178
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN 184
+S +DMS I I +AF GI K+ L L GN
Sbjct: 179 LS------------LDMSLNPIDFIQDQAFQGI-KLHELTLRGN 209
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 113 DNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
D LS VP I K+I+L+ NP+ + SYSF + ++++D+S C+I TI +A++G
Sbjct: 20 DQKLSKVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG 78
Query: 173 IDKIDTLKLNGNKLASLKPRTWS 195
+ + L L GN + S P ++S
Sbjct: 79 LHHLSNLILTGNPIQSFSPGSFS 101
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 79/157 (50%), Gaps = 31/157 (19%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C+D+ +P+ I T+ +DLS N + +L+ F + +Q L L +C++E ++
Sbjct: 15 TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSF--SNFSELQWLDLSRCEIETIE 72
Query: 97 DRAFRGVTNMDELDLSDNL-----------LSTVPSLIYIP---------------YLKS 130
D+A+ G+ ++ L L+ N L+++ +L+ + LK
Sbjct: 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTI 165
+N+AHN IH ++ +Y F + + ++D+S I TI
Sbjct: 133 LNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 7/132 (5%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD-RAFRGVTNMDELDLS--DNL 115
LDLS N ++ MG+ +Q L + L+ V + AF + + LD+S +
Sbjct: 381 LDLSFNGAIIMSANF---MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437
Query: 116 LSTVPSLIYIPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGID 174
+ + + L ++ +A N + S F +T + ++D+S CQ+ I F +
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497
Query: 175 KIDTLKLNGNKL 186
++ L ++ N L
Sbjct: 498 RLQLLNMSHNNL 509
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 23/104 (22%)
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQ 140
N+ ++ CKL F +TN+ +DLS N + T+ ++ + +L+ NP
Sbjct: 134 NVAHNFIHSCKLP----AYFSNLTNLVHVDLSYNYIQTI-TVNDLQFLR-----ENPQVN 183
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN 184
+S +DMS I I +AF GI K+ L L GN
Sbjct: 184 LS------------LDMSLNPIDFIQDQAFQGI-KLHELTLRGN 214
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 11/150 (7%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C+ TV+C R IP I L T L L+ N + + + + ++
Sbjct: 2 CPAMCHCEGT----TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGR-LPHL 56
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIP--YLKSINLAHNPIHQ 140
KL L++ +L ++ AF G +++ EL L +N + + + +++ LK++NL N I
Sbjct: 57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC 116
Query: 141 ISSYSFQSTPGIRYIDMS----NCQIHTIY 166
+ SF+ + ++++ NC H +
Sbjct: 117 VMPGSFEHLNSLTSLNLASNPFNCNCHLAW 146
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 31/169 (18%)
Query: 26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKL 85
G C T +C++ NFY IP+ + T+ LDLS N + L F +Q L
Sbjct: 1 GSPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFF--SFPELQVL 58
Query: 86 YLRKCKLEFVDDRAFRGVTNMDELDLSDNL-----------LSTVPSLI----------- 123
L +C+++ ++D A++ ++++ L L+ N LS++ L+
Sbjct: 59 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 118
Query: 124 ----YIPYLKSINLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
++ LK +N+AHN I ++ Y F + + ++D+S+ +I +IY
Sbjct: 119 FPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 166
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
K+++L+ NP+ + SYSF S P ++ +D+S C+I TI A+ + + TL L GN + S
Sbjct: 32 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 189 L 189
L
Sbjct: 92 L 92
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 31/158 (19%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C++ NFY IP+ + T+ LDLS N + L F +Q L L +C+++ ++
Sbjct: 13 TYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 70
Query: 97 DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
D A++ ++++ L L+ N LS++ L+ ++ LK
Sbjct: 71 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 130
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
+N+AHN I ++ Y F + + ++D+S+ +I +IY
Sbjct: 131 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 167
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
K+++L+ NP+ + SYSF S P ++ +D+S C+I TI A+ + + TL L GN + S
Sbjct: 33 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 189 L 189
L
Sbjct: 93 L 93
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 31/158 (19%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C++ NFY IP+ + T+ LDLS N + L F +Q L L +C+++ ++
Sbjct: 13 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 70
Query: 97 DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
D A++ ++++ L L+ N LS++ L+ ++ LK
Sbjct: 71 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKE 130
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
+N+AHN I ++ Y F + + ++D+S+ +I +IY
Sbjct: 131 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 167
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
K+++L+ NP+ + SYSF S P ++ +D+S C+I TI A+ + + TL L GN + S
Sbjct: 33 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 189 L 189
L
Sbjct: 93 L 93
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 31/158 (19%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C++ NFY IP+ + T+ LDLS N + L F +Q L L +C+++ ++
Sbjct: 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 68
Query: 97 DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
D A++ ++++ L L+ N LS++ L+ ++ LK
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
+N+AHN I ++ Y F + + ++D+S+ +I +IY
Sbjct: 129 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 165
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
K+++L+ NP+ + SYSF S P ++ +D+S C+I TI A+ + + TL L GN + S
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 189 LKPRTWS 195
L +S
Sbjct: 91 LALGAFS 97
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 57 QVLDLSSNNI--NVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
+VL ++ N+ N L +IF ++ N+ L L +C+LE + AF ++++ L+++ N
Sbjct: 448 EVLKMAGNSFQENFL-PDIFTEL--RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Query: 115 LLSTVPSLIY--IPYLKSINLAHNP 137
L +VP I+ + L+ I L NP
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTNP 529
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD-RAFRGVTNMDELDLSDNL 115
+ LDLS N + + +G+ ++ L + L+ + + F + N+ LD+S
Sbjct: 376 KYLDLSFNGVITMSSNF---LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 116 LSTVPSLIY--IPYLKSINLAHNPIHQ-ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
+ I+ + L+ + +A N + F + ++D+S CQ+ + AF
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 173 IDKIDTLKLNGNKLASL 189
+ + L + N+L S+
Sbjct: 493 LSSLQVLNMASNQLKSV 509
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
++CP CSC TV+C ++ ++P GI TQVL L N I L+ +F ++ T
Sbjct: 9 SACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRL--T 62
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+ +L L +L + F +T + +L L+DN L ++P + + L I L +NP
Sbjct: 63 QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 121
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 31/158 (19%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C++ NFY IP+ + T+ LDLS N + L F +Q L L +C+++ ++
Sbjct: 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 68
Query: 97 DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
D A++ ++++ L L+ N LS++ L+ ++ LK
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
+N+AHN I ++ Y F + + ++D+S+ +I +IY
Sbjct: 129 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 165
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
K+++L+ NP+ + SYSF S P ++ +D+S C+I TI A+ + + TL L GN + S
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 189 L 189
L
Sbjct: 91 L 91
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 31/158 (19%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C++ NFY IP+ + T+ LDLS N + L F +Q L L +C+++ ++
Sbjct: 35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 92
Query: 97 DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
D A++ ++++ L L+ N LS++ L+ ++ LK
Sbjct: 93 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 152
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
+N+AHN I ++ Y F + + ++D+S+ +I +IY
Sbjct: 153 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 189
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
K+++L+ NP+ + SYSF S P ++ +D+S C+I TI A+ + + TL L GN + S
Sbjct: 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114
Query: 189 LKPRTWS 195
L +S
Sbjct: 115 LALGAFS 121
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 64/154 (41%), Gaps = 13/154 (8%)
Query: 40 CIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD-R 98
C +F TI + LDLS N + + +G+ ++ L + L+ + +
Sbjct: 389 CSQSDFGTI------SLKYLDLSFNGVITMSSNF---LGLEQLEHLDFQHSNLKQMSEFS 439
Query: 99 AFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQ-ISSYSFQSTPGIRYI 155
F + N+ LD+S + I+ + L+ + +A N + F + ++
Sbjct: 440 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 499
Query: 156 DMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
D+S CQ+ + AF + + L ++ N SL
Sbjct: 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 533
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 31/158 (19%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C++ NFY IP+ + T+ LDLS N + L F +Q L L +C+++ ++
Sbjct: 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 68
Query: 97 DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
D A++ ++++ L L+ N LS++ L+ ++ LK
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
+N+AHN I ++ Y F + + ++D+S+ +I +IY
Sbjct: 129 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 165
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
K+++L+ NP+ + SYSF S P ++ +D+S C+I TI A+ + + TL L GN + S
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 189 LKPRTWS 195
L +S
Sbjct: 91 LALGAFS 97
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 7/135 (5%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD-RAFRGVTNMDELDLSDNLLS 117
LDLS N + + +G+ ++ L + L+ + + F + N+ LD+S
Sbjct: 378 LDLSFNGVITMSSNF---LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434
Query: 118 TVPSLIY--IPYLKSINLAHNPIHQ-ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGID 174
+ I+ + L+ + +A N + F + ++D+S CQ+ + AF +
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494
Query: 175 KIDTLKLNGNKLASL 189
+ L ++ N SL
Sbjct: 495 SLQVLNMSHNNFFSL 509
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
+CP CSC TV+C ++ ++P GI TQVL L N I L+ +F ++ T
Sbjct: 2 ACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRL--TQ 55
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+ +L L +L + F +T + +L L+DN L ++P + + L I L +NP
Sbjct: 56 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 31/169 (18%)
Query: 26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKL 85
G C T +C + NFY IP+ + T+ LDLS N + L F +Q L
Sbjct: 1 GSPCVEVVPNITYQCEELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVL 58
Query: 86 YLRKCKLEFVDDRAFRGVTNMDELDLSDNL-----------LSTVPSLI----------- 123
L +C+++ ++D A++ ++++ L L+ N LS++ L+
Sbjct: 59 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 118
Query: 124 ----YIPYLKSINLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
++ LK +N+AHN I ++ Y F + + ++D+S+ +I +IY
Sbjct: 119 FPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 166
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
K+++L+ NP+ + SYSF S P ++ +D+S C+I TI A+ + + TL L GN + S
Sbjct: 32 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 189 L 189
L
Sbjct: 92 L 92
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
+CP CSC TV+C ++ ++P GI TQVL L N I L+ +F ++ T
Sbjct: 2 ACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRL--TQ 55
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+ +L L +L + F +T + +L L+DN L ++P + + L I L +NP
Sbjct: 56 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNP 113
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 12/138 (8%)
Query: 43 RNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102
R+F +IP G+ + LDLS N I + N+Q L L+ ++ ++ AF
Sbjct: 41 RSFTSIPSGLTAAMKSLDLSFNKITYIGHGDL--RACANLQVLILKSSRINTIEGDAFYS 98
Query: 103 VTNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNC 160
+ +++ LDLSDN LS++ S + P LK +NL NP + S + +++N
Sbjct: 99 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-------FPNLTNL 151
Query: 161 QIHTIYS-EAFYGIDKID 177
Q I + E F I +ID
Sbjct: 152 QTLRIGNVETFSEIRRID 169
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 24 PLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQ 83
P+ SC+W R + + I +VLD+S+NN++ + + +Q
Sbjct: 427 PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS------FSLFLPRLQ 480
Query: 84 KLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+LY+ + KL+ + D + V + + ++ N L +VP I+ + L+ I L NP
Sbjct: 481 ELYISRNKLKTLPDASLFPV--LLVMKIASNQLKSVPDGIFDRLTSLQKIWLHTNP 534
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 12/138 (8%)
Query: 43 RNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102
R+F +IP G+ + LDLS N I + N+Q L L+ ++ ++ AF
Sbjct: 15 RSFTSIPSGLTAAMKSLDLSFNKITYIGHGDL--RACANLQVLILKSSRINTIEGDAFYS 72
Query: 103 VTNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNC 160
+ +++ LDLSDN LS++ S + P LK +NL NP + S + +++N
Sbjct: 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-------FPNLTNL 125
Query: 161 QIHTIYS-EAFYGIDKID 177
Q I + E F I +ID
Sbjct: 126 QTLRIGNVETFSEIRRID 143
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 24 PLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQ 83
P+ SC+W R + + I +VLD+S+NN++ + + +Q
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS------FSLFLPRLQ 454
Query: 84 KLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+LY+ + KL+ + D + V + + +S N L +VP I+ + L+ I L NP
Sbjct: 455 ELYISRNKLKTLPDASLFPV--LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 60 DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
DLS + I L K +F T++++L L + ++ +DD AF G+T++ +L+LS N L ++
Sbjct: 281 DLSKSKIFALLKSVFSHF--TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI 338
Query: 120 PSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKID 177
S ++ + L+ ++L++N I + SF P ++ + + Q+ ++ F + +
Sbjct: 339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398
Query: 178 TLKLNGNKLASLKPR 192
+ L+ N PR
Sbjct: 399 KIWLHTNPWDCSCPR 413
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
+VLDLS N+I L + FL G+ N+++L L +L+ V D F +T++ ++ L N
Sbjct: 350 EVLDLSYNHIRALGDQSFL--GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
A+CP CSC TV C +R+ ++P GI TQVL L N I L+ +F +T
Sbjct: 11 AACPSQCSCS----GTTVNCQERSLASVPAGIPTTTQVLHLYINQITKLEPGVF--DSLT 64
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+ L L +L + F +T + L L N L ++P ++ + L I L +NP
Sbjct: 65 QLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNP 123
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 9/161 (5%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C R V+C D +P+ + DT +LDL +N I ++ F + N+
Sbjct: 25 CPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDF--KNLKNL 78
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQIS 142
L L K+ + AF + ++ L LS N L +P + L+ + + N I ++
Sbjct: 79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHENEITKVR 137
Query: 143 SYSFQSTPGIRYIDMSNCQIHT--IYSEAFYGIDKIDTLKL 181
F + +++ + + I + AF G+ K+ +++
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 66/142 (46%), Gaps = 1/142 (0%)
Query: 48 IPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
+PE + Q L + N I ++K +F + + +L K +++ AF+G+ +
Sbjct: 115 LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
+ ++D ++T+P + P L ++L N I ++ + S + + + +S I + +
Sbjct: 175 YIRIADTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233
Query: 168 EAFYGIDKIDTLKLNGNKLASL 189
+ + L LN NKL +
Sbjct: 234 GSLANTPHLRELHLNNNKLVKV 255
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Query: 38 VECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97
+ D N TIP+G+ L L N I + G+ N+ KL L + VD+
Sbjct: 176 IRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASL--KGLNNLAKLGLSFNSISAVDN 233
Query: 98 RAFRGVTNMDELDLSDNLLSTVP-SLIYIPYLKSINLAHNPIHQISSYSF 146
+ ++ EL L++N L VP L Y++ + L +N I I S F
Sbjct: 234 GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 9/161 (5%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C R V+C D +P+ + DT +LDL +N I ++ F + N+
Sbjct: 25 CPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDF--KNLKNL 78
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQIS 142
L L K+ + AF + ++ L LS N L +P + L+ + + N I ++
Sbjct: 79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHENEITKVR 137
Query: 143 SYSFQSTPGIRYIDMSNCQIHT--IYSEAFYGIDKIDTLKL 181
F + +++ + + I + AF G+ K+ +++
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 66/142 (46%), Gaps = 1/142 (0%)
Query: 48 IPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
+PE + Q L + N I ++K +F + + +L K +++ AF+G+ +
Sbjct: 115 LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
+ ++D ++T+P + P L ++L N I ++ + S + + + +S I + +
Sbjct: 175 YIRIADTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233
Query: 168 EAFYGIDKIDTLKLNGNKLASL 189
+ + L LN NKL +
Sbjct: 234 GSLANTPHLRELHLNNNKLVKV 255
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Query: 38 VECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97
+ D N TIP+G+ L L N I + G+ N+ KL L + VD+
Sbjct: 176 IRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASL--KGLNNLAKLGLSFNSISAVDN 233
Query: 98 RAFRGVTNMDELDLSDNLLSTVP-SLIYIPYLKSINLAHNPIHQISSYSF 146
+ ++ EL L++N L VP L Y++ + L +N I I S F
Sbjct: 234 GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 30/194 (15%)
Query: 29 CKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLR 88
C K G RT C + IP+ + T+VL+ S N + +Q F ++ N+ L L
Sbjct: 7 CTEKEGNRTYNCENLGLREIPDTLPNTTEVLEFSFNFLPTIQNTTFSRL--INLIFLDLT 64
Query: 89 KCKLEFVDDRAFRGVTNMDELDLSDNLL---------------------STVPSLIYIPY 127
+C++ +V + F+ ++ + L+ N L + + +L +IP
Sbjct: 65 RCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPV 124
Query: 128 -----LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKL- 181
L+S++L N I I+ T ++ +D N IH I + +++ L L
Sbjct: 125 HNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNLSLN 184
Query: 182 -NGNKLASLKPRTW 194
NGN + ++P +
Sbjct: 185 FNGNDIKGIEPGAF 198
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 15/133 (11%)
Query: 55 DTQVLDLSSNNI--NVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
D + L+L N+ + K LQM + +++ L L C L +D +AF G+ N++ LDLS
Sbjct: 449 DLRHLNLQGNSFQDGSISKTNLLQM-VGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLS 507
Query: 113 DNLLSTVPSLIYIPYLKS--INLAHN-----PIHQISSYSFQSTPGIRY--IDMSNCQIH 163
N L T S+ + +LK +N+A N P H + + S QS + + +D + IH
Sbjct: 508 HNSL-TGDSMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTCSNIH 566
Query: 164 --TIYSEAFYGID 174
T Y E + ++
Sbjct: 567 FITWYKENLHKLE 579
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQ 140
++ + L+K + + FR T + ELDL+ L+ +PS I + LK + L N Q
Sbjct: 255 VESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQ 314
Query: 141 ISSYSFQSTPGIR--YI--DMSNCQIHTIYSEAFYGIDKID 177
+ + S P +R YI +M + T E + K+D
Sbjct: 315 LCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLD 355
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 79 ITNIQKLYLRKCKLEFVD--DRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLA 134
+ N+QKL L +E D + + + ++ L+LS N + + P L+ +++A
Sbjct: 348 LENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVA 407
Query: 135 HNPIHQISSYS-FQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN 184
+H + +S FQ+ +R +++S+C + T G+ + L L GN
Sbjct: 408 FTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGN 458
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 15/176 (8%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
SC CK +G + +IP G+ + LDLS+N I + + N
Sbjct: 29 SCDRNGICKGSSG---------SLNSIPSGLTEAVKSLDLSNNRITYISNSDLQR--CVN 77
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIH 139
+Q L L + +++ +F + +++ LDLS N LS + S + P L +NL NP
Sbjct: 78 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137
Query: 140 QISSYS-FQSTPGIRYIDMSNCQIHT-IYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
+ S F ++ + + N T I + F G+ ++ L+++ + L S +P++
Sbjct: 138 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 15/176 (8%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
SC CK +G + +IP G+ + LDLS+N I + LQ + N
Sbjct: 3 SCDRNGICKGSSG---------SLNSIPSGLTEAVKSLDLSNNRITYISNSD-LQRCV-N 51
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIH 139
+Q L L + +++ +F + +++ LDLS N LS + S + P L +NL NP
Sbjct: 52 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 111
Query: 140 QISSYS-FQSTPGIRYIDMSNCQIHT-IYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
+ S F ++ + + N T I + F G+ ++ L+++ + L S +P++
Sbjct: 112 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 167
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 96 DDRAFRGV--TNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPG 151
D F G+ +++ LDLS + ++ S ++ + LK +NLA+N I++I+ +F
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315
Query: 152 IRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW 194
++ +++S + +YS FYG+ K+ + L N +A ++ +T+
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 64 NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI 123
+NI + F + ++++ L L + ++ R F + ++ L+L+ N ++ +
Sbjct: 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA 309
Query: 124 Y--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKL 181
+ + L+ +NL++N + ++ S +F P + YID+ I I + F ++K+ TL L
Sbjct: 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369
Query: 182 NGNKLASL 189
N L ++
Sbjct: 370 RDNALTTI 377
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 17/108 (15%)
Query: 42 DRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101
D FY G+D + QVL+LS N + L F G+ + + L+K + + D+ F+
Sbjct: 307 DEAFY----GLD-NLQVLNLSYNLLGELYSSNF--YGLPKVAYIDLQKNHIAIIQDQTFK 359
Query: 102 GVTNMDELDLSDNLLSTVPSLIYIP----------YLKSINLAHNPIH 139
+ + LDL DN L+T+ + IP L INL N IH
Sbjct: 360 FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH 407
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHN 136
+TN+ L L +L+ + + F +TN+ EL L +N L ++P ++ + L +NLAHN
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 137 PIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
+ + F + +D+S Q+ ++ F + ++ L+L N+L S+
Sbjct: 144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
L+ N + L +F ++ TN+++L L + +L+ + D F +TN+ L+L+ N L ++P
Sbjct: 92 LTGNQLQSLPNGVFDKL--TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149
Query: 121 SLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDT 178
++ + L ++L++N + + F ++ + + Q+ ++ F D++ +
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF---DRLTS 206
Query: 179 LK 180
L+
Sbjct: 207 LQ 208
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 71 KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKS 130
K+IF K L+K + D + ++D++ +++ + +V + Y+P ++
Sbjct: 10 KQIFPDDAFAETIKANLKKKSV--TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRY 67
Query: 131 INLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
+ L N +H IS + + + Y+ ++ Q+ ++ + F + + L L N+L SL
Sbjct: 68 LALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHN 136
+TN+ L L +L+ + + F +TN+ EL L +N L ++P ++ + L + L HN
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN 143
Query: 137 PIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
+ + F + +D+ N Q+ ++ F + ++ L LN N+L S+
Sbjct: 144 QLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
L N + L +F ++ TN+ LYL +L+ + F +TN+ LDL +N L ++P
Sbjct: 116 LVENQLQSLPDGVFDKL--TNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLP 173
Query: 121 SLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYI 155
++ + LK ++L N + + F + +I
Sbjct: 174 EGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHI 210
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
L+ N + L +F ++ TN+++L L + +L+ + D F +TN+ L L N L ++P
Sbjct: 92 LTGNQLQSLPNGVFDKL--TNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLP 149
Query: 121 SLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
++ + L ++L +N + + F ++ + +++ Q+ ++ F
Sbjct: 150 KGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVF 201
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 71 KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKS 130
K+IF K L+K + D + ++D++ +++ + +V + Y+P ++
Sbjct: 10 KQIFPDDAFAETIKANLKKKSV--TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRY 67
Query: 131 INLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
+ L N +H IS + + + Y+ ++ Q+ ++ + F + + L L N+L SL
Sbjct: 68 LALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 28/139 (20%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM----- 77
CP CSC + C + ++P GI L+L SN + L +F ++
Sbjct: 1 CPSRCSC----SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTK 56
Query: 78 -----------------GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
+T + LYL + KL+ + + F +T + EL L N L +VP
Sbjct: 57 LSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116
Query: 121 SLIY--IPYLKSINLAHNP 137
I+ + L+ I L NP
Sbjct: 117 DGIFDRLTSLQKIWLHTNP 135
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 60 DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
DLS + I L K +F T++++L L + ++ +DD AF G+T++ EL L N L +V
Sbjct: 281 DLSKSKIFALLKSVFSHF--TDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSV 338
Query: 120 PSLIY--IPYLKSINLAHNP 137
P I+ + L+ I L NP
Sbjct: 339 PDGIFDRLTSLQKIWLHTNP 358
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 27/165 (16%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C A V C R +P + DT +L LS N + M T + +L
Sbjct: 4 CEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLN 61
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSF 146
L +C+L +L + L P L +++L+HN + +
Sbjct: 62 LDRCELT--------------KLQVDGTL----------PVLGTLDLSHNQLQSLPLLG- 96
Query: 147 QSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
Q+ P + +D+S ++ ++ A G+ ++ L L GN+L +L P
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 27/165 (16%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C A V C R +P + DT +L LS N + M T + +L
Sbjct: 4 CEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLN 61
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSF 146
L +C+L +L + L P L +++L+HN + +
Sbjct: 62 LDRCELT--------------KLQVDGTL----------PVLGTLDLSHNQLQSLPLLG- 96
Query: 147 QSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
Q+ P + +D+S ++ ++ A G+ ++ L L GN+L +L P
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 27/165 (16%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C A V C R +P + DT +L LS N + M T + +L
Sbjct: 4 CEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLN 61
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSF 146
L +C+L + ++D + +P L +++L+HN + +
Sbjct: 62 LDRCELTKL------------QVDGT------------LPVLGTLDLSHNQLQSLPLLG- 96
Query: 147 QSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
Q+ P + +D+S ++ ++ A G+ ++ L L GN+L +L P
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 27/165 (16%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C A V C R +P + DT +L LS N + M T + +L
Sbjct: 4 CEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLN 61
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSF 146
L +C+L + ++D + +P L +++L+HN + +
Sbjct: 62 LDRCELTKL------------QVDGT------------LPVLGTLDLSHNQLQSLPLLG- 96
Query: 147 QSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
Q+ P + +D+S ++ ++ A G+ ++ L L GN+L +L P
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 27/165 (16%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C A V C RN +P + DT +L LS N + + Y
Sbjct: 4 CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMP---------Y 54
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSF 146
R +L DRA +D +P L +++L+HN + +
Sbjct: 55 TRLTQLNL--DRAELTKLQVDG---------------TLPVLGTLDLSHNQLQSLPLLG- 96
Query: 147 QSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
Q+ P + +D+S ++ ++ A G+ ++ L L GN+L +L P
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Score = 33.1 bits (74), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 10/131 (7%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
LDLS N LQ L + + L + +L + A RG+ + EL L N L
Sbjct: 81 TLDLSHNQ---LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 118 TVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS--EAFYGI 173
T+P L P L+ ++LA+N + ++ + G+ +D Q +++Y+ + F+G
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLN---GLENLDTLLLQENSLYTIPKGFFGS 194
Query: 174 DKIDTLKLNGN 184
+ L+GN
Sbjct: 195 HLLPFAFLHGN 205
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 27/165 (16%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C A V C RN +P + DT +L LS N + + Y
Sbjct: 4 CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMP---------Y 54
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSF 146
R +L DRA + +L + L P L +++L+HN + +
Sbjct: 55 TRLTQLNL--DRA-----ELTKLQVDGTL----------PVLGTLDLSHNQLQSLPLLG- 96
Query: 147 QSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
Q+ P + +D+S ++ ++ A G+ ++ L L GN+L +L P
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Score = 33.1 bits (74), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 10/131 (7%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
LDLS N LQ L + + L + +L + A RG+ + EL L N L
Sbjct: 81 TLDLSHNQ---LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 118 TVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS--EAFYGI 173
T+P L P L+ ++LA+N + ++ + G+ +D Q +++Y+ + F+G
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLN---GLENLDTLLLQENSLYTIPKGFFGS 194
Query: 174 DKIDTLKLNGN 184
+ L+GN
Sbjct: 195 HLLPFAFLHGN 205
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 27/165 (16%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C A V C RN +P + DT +L LS N + + Y
Sbjct: 4 CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMP---------Y 54
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSF 146
R +L DRA + +L + L P L +++L+HN + +
Sbjct: 55 TRLTQLNL--DRA-----ELTKLQVDGTL----------PVLGTLDLSHNQLQSLPLLG- 96
Query: 147 QSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
Q+ P + +D+S ++ ++ A G+ ++ L L GN+L +L P
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 10/131 (7%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
LDLS N LQ L + + L + +L + A RG+ + EL L N L
Sbjct: 81 TLDLSHNQ---LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 118 TVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS--EAFYGI 173
T+P L P L+ ++LA+N + ++ + G+ +D Q +++Y+ + F+G
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLN---GLENLDTLLLQENSLYTIPKGFFGS 194
Query: 174 DKIDTLKLNGN 184
+ L+GN
Sbjct: 195 HLLPFAFLHGN 205
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 83/173 (47%), Gaps = 25/173 (14%)
Query: 37 TVECIDRN-FYTIPEGIDLDT---QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL 92
TV ++RN ++P GI +T L +S+NN+ ++ + F T++Q L L +L
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLSSNRL 183
Query: 93 EFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYL----KSINLAHNPIH-QISSYSFQ 147
VD + ++ ++S NLLST+ I + L SIN+ P++ +++ Q
Sbjct: 184 THVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ 240
Query: 148 ST-----------PGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
PG+ +D+S ++ I F + +++ L ++ N+L +L
Sbjct: 241 HNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 293
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 79/188 (42%), Gaps = 25/188 (13%)
Query: 25 LGCSCKWKAGKRTVE--CIDRN------FYTIPEGIDLDTQVL-----DLSSNNINVL-- 69
+G ++ R E CID N FY + ID+ TQ + D++ NN ++
Sbjct: 1 VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDV--HIDMQTQDVYFGFEDITLNNQKIVTF 58
Query: 70 ------QKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI 123
+ L ++ L L ++E +D AF + +L + N + +P +
Sbjct: 59 KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 118
Query: 124 Y--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKL 181
+ +P L + L N + + F +TP + + MSN + I + F + L+L
Sbjct: 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178
Query: 182 NGNKLASL 189
+ N+L +
Sbjct: 179 SSNRLTHV 186
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 83/173 (47%), Gaps = 25/173 (14%)
Query: 37 TVECIDRN-FYTIPEGIDLDT---QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL 92
TV ++RN ++P GI +T L +S+NN+ ++ + F T++Q L L +L
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLSSNRL 177
Query: 93 EFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYL----KSINLAHNPIH-QISSYSFQ 147
VD + ++ ++S NLLST+ I + L SIN+ P++ +++ Q
Sbjct: 178 THVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ 234
Query: 148 ST-----------PGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
PG+ +D+S ++ I F + +++ L ++ N+L +L
Sbjct: 235 HNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 287
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 23/179 (12%)
Query: 32 KAGKRTVECIDRN------FYTIPEGIDLDTQVLDLSSNNINVLQKEIF----------- 74
K + +CID N FY + ID+ TQ + +I + ++I
Sbjct: 4 KPRQPEYKCIDSNLQYDCVFYDV--HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 61
Query: 75 --LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKS 130
L ++ L L ++E +D AF + +L + N + +P ++ +P L
Sbjct: 62 AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121
Query: 131 INLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
+ L N + + F +TP + + MSN + I + F + L+L+ N+L +
Sbjct: 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 128 LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLA 187
+ I L N I I +F +R ID+SN QI + +AF G+ +++L L GNK+
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 188 SL 189
L
Sbjct: 94 EL 95
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 90 CKLEFVDDRAFRGVTNMD--------ELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIH 139
C VD R +G+T + E+ L N + +P + PY L+ I+L++N I
Sbjct: 11 CSNNIVDCRG-KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS 69
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLK 190
+++ +FQ + + + +I + F G+ + L LN NK+ L+
Sbjct: 70 ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR 120
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/173 (19%), Positives = 72/173 (41%), Gaps = 28/173 (16%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C+C V+C + IP + + L N I V+ F +
Sbjct: 5 CPAACTC----SNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAF--SPYKKL 58
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQIS 142
+++ L ++ + AF+G+ +++ L L N ++ +P KS+
Sbjct: 59 RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP--------KSL----------- 99
Query: 143 SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTWS 195
F+ ++ + ++ +I+ + +AF + ++ L L NKL ++ T+S
Sbjct: 100 ---FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 128 LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLA 187
+ I L N I I +F +R ID+SN QI + +AF G+ +++L L GNK+
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 188 SL 189
L
Sbjct: 94 EL 95
Score = 33.9 bits (76), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 90 CKLEFVDDRAFRGVTNMD--------ELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIH 139
C VD R +G+T + E+ L N + +P + PY L+ I+L++N I
Sbjct: 11 CSNNIVDCRG-KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS 69
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLK 190
+++ +FQ + + + +I + F G+ + L LN NK+ L+
Sbjct: 70 ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLR 120
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/173 (19%), Positives = 72/173 (41%), Gaps = 28/173 (16%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C+C V+C + IP + + L N I V+ F +
Sbjct: 5 CPAACTC----SNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAF--SPYKKL 58
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQIS 142
+++ L ++ + AF+G+ +++ L L N ++ +P KS+
Sbjct: 59 RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP--------KSL----------- 99
Query: 143 SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTWS 195
F+ ++ + ++ +I+ + +AF + ++ L L NKL ++ T+S
Sbjct: 100 ---FEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV-PSLIYI-PYLKSINLAHNP 137
+NI L L +L + F + + LD N +S + P L I P LK +NL HN
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 138 IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLK 190
+ QIS +F + +D+ + IH I S F + L L+ N L+S K
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTK 137
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 24/115 (20%)
Query: 69 LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV--TNMDELDLSDNLLSTVPSLIYIP 126
L +++ ++ T+IQ L L +L + F G+ TN+ +LDLS
Sbjct: 211 LTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLS-------------- 256
Query: 127 YLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKL 181
+N +H + + SF P +RY+ + I + +FYG+ + L L
Sbjct: 257 --------YNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 71/152 (46%), Gaps = 17/152 (11%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL--- 115
LDLS NN++ + F + +++ L L ++ + R+F G++N+ L L
Sbjct: 253 LDLSYNNLHDVGNGSF--SYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQ 310
Query: 116 ---LSTVP-----SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN--CQIHTI 165
L++ P S ++ YL+ +N+ N I S +F ++Y+ +S + T+
Sbjct: 311 SVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTL 370
Query: 166 YSEAFYGI--DKIDTLKLNGNKLASLKPRTWS 195
+E F + + TL L N ++ + T+S
Sbjct: 371 TNETFVSLAHSPLLTLNLTKNHISKIANGTFS 402
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA--------FRGVTNMDEL 109
+LDLS+NNI + +++ G+ N++ L + L + RA +G++++ L
Sbjct: 484 ILDLSNNNIANINEDLL--EGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHIL 541
Query: 110 DLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
+L N L +P ++ + LKSINL N ++++ + F +R +++ I ++
Sbjct: 542 NLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEK 601
Query: 168 EAF 170
+ F
Sbjct: 602 DVF 604
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 79 ITNIQKLYLRKCKLEFVD--DRAFRGVTNMDELDLSDNLLSTV 119
+ ++Q+L LR+ L+ VD FR + N+ LDLS+N ++ +
Sbjct: 453 VPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANI 495
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 69 LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV--TNMDELDLSDNLLSTV--PSLIY 124
L +++ L++ T+I+ L L +L + F G+ TN+ LDLS N L+ V S +
Sbjct: 221 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 280
Query: 125 IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKID 177
+P L+ L +N I + S+S +RY+++ + T S + + KID
Sbjct: 281 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK--RSFTKQSISLASLPKID 331
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV-PSLIY-IPYLKSINLAHNP 137
TNI L L +L + F + + LD+ N +S + P L +P LK +NL HN
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 138 IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLK 190
+ Q+S +F + + + + I I + F + TL L+ N L+S K
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK 147
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 73/153 (47%), Gaps = 17/153 (11%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL-- 115
+LDLS NN+NV+ + F + ++ +L ++ + + G+ N+ L+L +
Sbjct: 262 MLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 319
Query: 116 ----LSTVP-----SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN--CQIHT 164
L+++P S ++ L+ +N+ N I I S F ++Y+ +SN + T
Sbjct: 320 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 379
Query: 165 IYSEAFYGI--DKIDTLKLNGNKLASLKPRTWS 195
+ +E F + + L L NK++ ++ +S
Sbjct: 380 LTNETFVSLAHSPLHILNLTKNKISKIESDAFS 412
Score = 33.1 bits (74), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 50 EGIDLDTQVLDLSSNNINVLQKE------IFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
EG++ ++LDL NN+ L K I+ G++++ L L + + F+ +
Sbjct: 511 EGLE-KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 569
Query: 104 TNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIHQISSYSFQSTPGIR 153
+ +DL N L+T+P+ ++ LKS+NL N I + F P R
Sbjct: 570 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF--GPAFR 619
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 69 LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV--TNMDELDLSDNLLSTV--PSLIY 124
L +++ L++ T+I+ L L +L + F G+ TN+ LDLS N L+ V S +
Sbjct: 216 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 275
Query: 125 IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKID 177
+P L+ L +N I + S+S +RY+++ + T S + + KID
Sbjct: 276 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK--RSFTKQSISLASLPKID 326
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV-PSLIY-IPYLKSINLAHNP 137
TNI L L +L + F + + LD+ N +S + P L +P LK +NL HN
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 138 IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLK 190
+ Q+S +F + + + + I I + F + TL L+ N L+S K
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK 142
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 73/153 (47%), Gaps = 17/153 (11%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL-- 115
+LDLS NN+NV+ + F + ++ +L ++ + + G+ N+ L+L +
Sbjct: 257 MLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 314
Query: 116 ----LSTVP-----SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN--CQIHT 164
L+++P S ++ L+ +N+ N I I S F ++Y+ +SN + T
Sbjct: 315 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 374
Query: 165 IYSEAFYGI--DKIDTLKLNGNKLASLKPRTWS 195
+ +E F + + L L NK++ ++ +S
Sbjct: 375 LTNETFVSLAHSPLHILNLTKNKISKIESDAFS 407
Score = 33.1 bits (74), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 50 EGIDLDTQVLDLSSNNINVLQKE------IFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
EG++ ++LDL NN+ L K I+ G++++ L L + + F+ +
Sbjct: 506 EGLE-KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 564
Query: 104 TNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIHQISSYSFQSTPGIR 153
+ +DL N L+T+P+ ++ LKS+NL N I + F P R
Sbjct: 565 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF--GPAFR 614
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 69 LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV--TNMDELDLSDNLLSTV--PSLIY 124
L +++ L++ T+I+ L L +L + F G+ TN+ LDLS N L+ V S +
Sbjct: 211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 270
Query: 125 IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKID 177
+P L+ L +N I + S+S +RY+++ + T S + + KID
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK--RSFTKQSISLASLPKID 321
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV-PSLIY-IPYLKSINLAHNP 137
TNI L L +L + F + + LD+ N +S + P L +P LK +NL HN
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 138 IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLK 190
+ Q+S +F + + + + I I + F + TL L+ N L+S K
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK 137
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 73/153 (47%), Gaps = 17/153 (11%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL-- 115
+LDLS NN+NV+ + F + ++ +L ++ + + G+ N+ L+L +
Sbjct: 252 MLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309
Query: 116 ----LSTVP-----SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN--CQIHT 164
L+++P S ++ L+ +N+ N I I S F ++Y+ +SN + T
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369
Query: 165 IYSEAFYGI--DKIDTLKLNGNKLASLKPRTWS 195
+ +E F + + L L NK++ ++ +S
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402
Score = 33.1 bits (74), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 50 EGIDLDTQVLDLSSNNINVLQKE------IFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
EG++ ++LDL NN+ L K I+ G++++ L L + + F+ +
Sbjct: 501 EGLE-KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559
Query: 104 TNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIHQISSYSFQSTPGIR 153
+ +DL N L+T+P+ ++ LKS+NL N I + F P R
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF--GPAFR 609
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 71/188 (37%), Gaps = 29/188 (15%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C A V C RN +P + DT +L LS N + M T + +L
Sbjct: 5 CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLN 62
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP-----------------SLIYIPY-- 127
L +C+L + V + LDLS N L ++P L +P
Sbjct: 63 LDRCELTKLQVDGTLPV--LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 120
Query: 128 ------LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKL 181
L+ + L N + + TP + + ++N + + + G++ +DTL L
Sbjct: 121 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 180
Query: 182 NGNKLASL 189
N L ++
Sbjct: 181 QENSLYTI 188
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 31/144 (21%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDT-----------------------Q 57
+ CP C+C V C ++ +P+GI D
Sbjct: 2 SRCPTECTCL----DTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLT 57
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
++DLS+N I+ L + F M T + L L +L + R F G+ ++ L L N +S
Sbjct: 58 LIDLSNNRISTLSNQSFSNM--TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 118 TVPSLIY--IPYLKSINLAHNPIH 139
VP + + L + + NP++
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPLY 139
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 155 IDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW 194
ID+SN +I T+ +++F + ++ TL L+ N+L + PRT+
Sbjct: 59 IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF 98
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 27/128 (21%)
Query: 54 LDTQVLDLSSN-NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
L +LD+ N NI+ +++ F+ + ++ L+L K ++ + + AF G T +DEL+LS
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESV-ILWLNKNGIQEIHNSAFNG-TQLDELNLS 185
Query: 113 DNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
DN N + ++ + F G +D+S +IH++ S YG
Sbjct: 186 DN---------------------NNLEELPNDVFHGASGPVILDISRTRIHSLPS---YG 221
Query: 173 IDKIDTLK 180
++ + L+
Sbjct: 222 LENLKKLR 229
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 20/92 (21%)
Query: 91 KLEFVDDRAFRGVTNMDELDLSDN---------LLSTVPSLIYIPYLKSINLAHNPIHQI 141
KL + AF G +++++++S N + S +P L I K+ NL + I
Sbjct: 41 KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-----I 95
Query: 142 SSYSFQSTPGIRYIDMSNCQI------HTIYS 167
+ +FQ+ P ++Y+ +SN I H I+S
Sbjct: 96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+SSN + +I + +TN++ L ++ D +TN+DEL L+ N L
Sbjct: 177 LDISSNKV----SDISVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD 230
Query: 119 VPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDT 178
+ +L + L ++LA+N I ++ S + + + + QI I G+ +
Sbjct: 231 IGTLASLTNLTDLDLANNQISNLAPLSGLT--KLTELKLGANQISNI--SPLAGLTALTN 286
Query: 179 LKLNGNKLASLKP 191
L+LN N+L + P
Sbjct: 287 LELNENQLEDISP 299
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+SSN + +I + +TN++ L ++ D +TN+DEL L+ N L
Sbjct: 181 LDISSNKV----SDISVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD 234
Query: 119 VPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDT 178
+ +L + L ++LA+N I ++ S + + + + QI I G+ +
Sbjct: 235 IGTLASLTNLTDLDLANNQISNLAPLSGLT--KLTELKLGANQISNI--SPLAGLTALTN 290
Query: 179 LKLNGNKLASLKP 191
L+LN N+L + P
Sbjct: 291 LELNENQLEDISP 303
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+SSN + +I + +TN++ L ++ D +TN+DEL L+ N L
Sbjct: 178 LDISSNKV----SDISVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD 231
Query: 119 VPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDT 178
+ +L + L ++LA+N I ++ S + + + + QI I G+ +
Sbjct: 232 IGTLASLTNLTDLDLANNQISNLAPLSGLT--KLTELKLGANQISNI--SPLAGLTALTN 287
Query: 179 LKLNGNKLASLKP 191
L+LN N+L + P
Sbjct: 288 LELNENQLEDISP 300
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+SSN + +I + +TN++ L ++ D +TN+DEL L+ N L
Sbjct: 178 LDISSNKV----SDISVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD 231
Query: 119 VPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDT 178
+ +L + L ++LA+N I ++ S + + + + QI I G+ +
Sbjct: 232 IGTLASLTNLTDLDLANNQISNLAPLSGLT--KLTELKLGANQISNI--SPLAGLTALTN 287
Query: 179 LKLNGNKLASLKP 191
L+LN N+L + P
Sbjct: 288 LELNENQLEDISP 300
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+SSN + +I + +TN++ L ++ D +TN+DEL L+ N L
Sbjct: 178 LDISSNKV----SDISVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD 231
Query: 119 VPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDT 178
+ +L + L ++LA+N I ++ S + + + + QI I G+ +
Sbjct: 232 IGTLASLTNLTDLDLANNQISNLAPLSGLT--KLTELKLGANQISNI--SPLAGLTALTN 287
Query: 179 LKLNGNKLASLKP 191
L+LN N+L + P
Sbjct: 288 LELNENQLEDISP 300
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+SSN + +I + +TN++ L ++ D +TN+DEL L+ N L
Sbjct: 182 LDISSNKV----SDISVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD 235
Query: 119 VPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDT 178
+ +L + L ++LA+N I ++ S + + + + QI I G+ +
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLAPLSGLT--KLTELKLGANQISNI--SPLAGLTALTN 291
Query: 179 LKLNGNKLASLKP 191
L+LN N+L + P
Sbjct: 292 LELNENQLEDISP 304
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+SSN + +I + +TN++ L ++ D +TN+DEL L+ N L
Sbjct: 177 LDISSNKV----SDISVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD 230
Query: 119 VPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDT 178
+ +L + L ++LA+N I ++ S + + + + QI I G+ +
Sbjct: 231 IGTLASLTNLTDLDLANNQISNLAPLSGLT--KLTELKLGANQISNI--SPLAGLTALTN 286
Query: 179 LKLNGNKLASLKP 191
L+LN N+L + P
Sbjct: 287 LELNENQLEDISP 299
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 29/188 (15%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C A V C R+ +P + DT +L LS N + M T + +L
Sbjct: 4 CEVSKVASHLEVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLN 61
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP-----------------SLIYIPY-- 127
L +C+L + V + LDLS N L ++P L +P
Sbjct: 62 LDRCELTKLQVDGTLPV--LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 128 ------LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKL 181
L+ + L N + + TP + + ++N + + + G++ +DTL L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
Query: 182 NGNKLASL 189
N L ++
Sbjct: 180 QENSLYTI 187
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 27/128 (21%)
Query: 54 LDTQVLDLSSN-NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
L +LD+ N NI+ +++ F+ + ++ L+L K ++ + + AF G T +DEL+LS
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESV-ILWLNKNGIQEIHNCAFNG-TQLDELNLS 185
Query: 113 DNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
DN N + ++ + F G +D+S +IH++ S YG
Sbjct: 186 DN---------------------NNLEELPNDVFHGASGPVILDISRTRIHSLPS---YG 221
Query: 173 IDKIDTLK 180
++ + L+
Sbjct: 222 LENLKKLR 229
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 20/92 (21%)
Query: 91 KLEFVDDRAFRGVTNMDELDLSDN---------LLSTVPSLIYIPYLKSINLAHNPIHQI 141
KL + AF G +++++++S N + S +P L I K+ NL + I
Sbjct: 41 KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-----I 95
Query: 142 SSYSFQSTPGIRYIDMSNCQI------HTIYS 167
+ +FQ+ P ++Y+ +SN I H I+S
Sbjct: 96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 71/188 (37%), Gaps = 29/188 (15%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C A V C R+ +P + DT +L LS N + M T + +L
Sbjct: 4 CEVSKVASHLEVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLN 61
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP-------------------------S 121
L +C+L + V + LDLS N L ++P +
Sbjct: 62 LDRCELTKLQVDGTLPV--LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 122 LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKL 181
L + L+ + L N + + TP + + ++N + + + G++ +DTL L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLL 179
Query: 182 NGNKLASL 189
N L ++
Sbjct: 180 QENSLYTI 187
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSI--NLAHN 136
+ +++ L L C L +D +AF + M +DLS N L T S+ + +LK I NLA N
Sbjct: 472 VGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSL-TCDSIDSLSHLKGIYLNLAAN 530
Query: 137 PIHQISS-----YSFQSTPGIRY--IDMSNCQIH--TIYSEAFYGID 174
I+ IS S QST + + +D + IH T Y E + ++
Sbjct: 531 SINIISPRLLPILSQQSTINLSHNPLDCTCSNIHFLTWYKENLHKLE 577
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKL 186
I + +F + ++D++ CQI+ I+ + F ++ TL L GN L
Sbjct: 45 IHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPL 90
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP----SLIYIPYLKSINLAHN 136
N++KL+L LE + N+ LDLS N + L + +L+++NL+HN
Sbjct: 332 NVKKLHLGVGCLE--------KLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHN 383
Query: 137 PIHQISSYSFQSTPGIRYIDMSNCQIH 163
+ S +F+ P + +D++ ++H
Sbjct: 384 EPLGLQSQAFKECPQLELLDLAFTRLH 410
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS-LIYIPYLKSINLAHNPIHQ 140
++ L L++ + + F+ T + ELDL+ L +PS + + LK + L+ N Q
Sbjct: 253 VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQ 312
Query: 141 ISSYSFQSTPGIRYI 155
+ S + P + ++
Sbjct: 313 LCQISAANFPSLTHL 327
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.5 bits (75), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 131 INLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKL 186
+ + N + I + +F + ++D++ CQI+ I+ + F ++DTL L N L
Sbjct: 38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 57 QVLDLSSNNI--NVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
Q L+L N+ +QK LQ + ++ L L C L +D AF + M+ +DLS N
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQT-LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510
Query: 115 LLSTVPSLIYIPYLKSI--NLAHNPI 138
L T S+ + +LK I NLA N I
Sbjct: 511 RL-TSSSIEALSHLKGIYLNLASNHI 535
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 8/138 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA-FRGVTNMDELDLSDNL 115
Q L+LS N L+ E F + ++ L L +L+ D ++ F+ + + L+LS +L
Sbjct: 379 QSLNLSYNEPLSLKTEAFKE--CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436
Query: 116 LSTVPSLIY--IPYLKSINLA--HNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
L ++ +P L+ +NL H P I + S Q+ + + +S C + +I AF
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496
Query: 171 YGIDKIDTLKLNGNKLAS 188
+ ++ + L+ N+L S
Sbjct: 497 TSLKMMNHVDLSHNRLTS 514
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS-LIYIPYLKSINLAHNPIH 139
N+QK Y + F + + ELDL+ LS +PS L+ + LK + L+ N
Sbjct: 260 NLQKHYFFN-----ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFE 314
Query: 140 QISSYSFQSTPGIRYIDM 157
+ S + P + ++ +
Sbjct: 315 NLCQISASNFPSLTHLSI 332
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 105 NMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT 164
+MD+ D+S + + + ++SINL + ISS +F G++ +D++ +
Sbjct: 237 DMDDEDISPAVFEGLCEM----SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE 292
Query: 165 IYSEAFYGIDKIDTLKLNGNKLASL 189
+ S G+ + L L+ NK +L
Sbjct: 293 LPS-GLVGLSTLKKLVLSANKFENL 316
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPI 138
+T I +L L L+ V A G+ ++ LDL+ ++ V L + L+ + L N I
Sbjct: 84 LTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQI 141
Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
IS + + ++Y+ + N Q+ + A + K+ TLK + NK++ + P
Sbjct: 142 TNISPLAGLT--NLQYLSIGNAQVSDLTPLA--NLSKLTTLKADDNKISDISP 190
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 105 NMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYS-FQSTPGIRYIDMSNCQIH 163
N+ L+L DN ++ + L + + + L+ NP+ +S+ + QS I+ +D+++ QI
Sbjct: 64 NLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQS---IKTLDLTSTQIT 120
Query: 164 TIYSEAFYGIDKIDTLKLNGNKLASLKP 191
+ A G+ + L L+ N++ ++ P
Sbjct: 121 DVTPLA--GLSNLQVLYLDLNQITNISP 146
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 26/179 (14%)
Query: 17 SVTQASCP-LGCSCKWKAGKRTVECID--RNFYTIPEGIDL-DTQVLDLSSNNINVLQKE 72
+VTQA + + G T+E I N G++L D Q+ DL+
Sbjct: 40 AVTQADLDGIATLSAFNTGVTTIEGIQYLNNLI----GLELKDNQITDLTP--------- 86
Query: 73 IFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSIN 132
+T I +L L L+ V A G+ ++ LDL+ ++ V L + L+ +
Sbjct: 87 ---LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 141
Query: 133 LAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
L N I IS + + ++Y+ + N Q++ + A + K+ TL+ + NK++ + P
Sbjct: 142 LDLNQITNISPLAGLT--NLQYLSIGNNQVNDLTPLA--NLSKLTTLRADDNKISDISP 196
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 109 LDLSDNLLST-VPSLI-YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
LD+S N+LS +P I +PYL +NL HN I G+ +D+S+ ++
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 167 SEAFYGIDKIDTLKLNGNKLASLKPR 192
+A + + + L+ N L+ P
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPE 722
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 109 LDLSDNLLST-VPSLI-YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
LD+S N+LS +P I +PYL +NL HN I G+ +D+S+ ++
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 167 SEAFYGIDKIDTLKLNGNKLASLKPR 192
+A + + + L+ N L+ P
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPE 719
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQI 141
+ LY+ K+ D A + +TN+ EL L+++ +S + L + S+NL N H +
Sbjct: 90 LTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGAN--HNL 145
Query: 142 SSYS-FQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
S S + G+ Y+ ++ ++ + A + + +L LN N++ + P
Sbjct: 146 SDLSPLSNXTGLNYLTVTESKVKDVTPIA--NLTDLYSLSLNYNQIEDISP 194
>pdb|2RFO|A Chain A, Crystral Structure Of The Nucleoporin Nic96
pdb|2RFO|B Chain B, Crystral Structure Of The Nucleoporin Nic96
Length = 651
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 16/106 (15%)
Query: 63 SNNINVLQKEI-FLQMGITNIQKLYLRK------CKLEFVD-----DRAFRGVTNMDELD 110
S I+V KEI L + I++I++LY K ++E +D D D +
Sbjct: 515 SRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPFSDELSARKKAQDFSN 574
Query: 111 LSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYID 156
L DN++ +P+L+ I +++ N IH ++ +QS+ + ID
Sbjct: 575 LDDNIVKNIPNLLII----TLSCISNMIHILNESKYQSSTKGQQID 616
>pdb|2QX5|A Chain A, Structure Of Nucleoporin Nic96
pdb|2QX5|B Chain B, Structure Of Nucleoporin Nic96
Length = 661
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 16/106 (15%)
Query: 63 SNNINVLQKEI-FLQMGITNIQKLYLRK------CKLEFVD-----DRAFRGVTNMDELD 110
S I+V KEI L + I++I++LY K ++E +D D D +
Sbjct: 525 SRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPFSDELSARKKAQDFSN 584
Query: 111 LSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYID 156
L DN++ +P+L+ I +++ N IH ++ +QS+ + ID
Sbjct: 585 LDDNIVKNIPNLLII----TLSCISNMIHILNESKYQSSTKGQQID 626
>pdb|3RFE|A Chain A, Crystal Structure Of Glycoprotein Gpib Ectodomain
pdb|3RFE|B Chain B, Crystal Structure Of Glycoprotein Gpib Ectodomain
Length = 130
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRN--FYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGI 79
CP CSC AG V+C R + ++P +DT L L+ NN+ L + +
Sbjct: 1 PCPAPCSC---AGT-LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPA 56
Query: 80 TNIQKLYLR--KCKLEFVDDRAF 100
L +C V RA+
Sbjct: 57 LRTAHLGANPWRCDCRLVPLRAW 79
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 24 PLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNIN 67
P C W + ++ +P+G+ +VLDLSSN +N
Sbjct: 242 PSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLN 285
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111
+T +Q LYL K + D RA RG+ N+D L+L
Sbjct: 175 LTKLQNLYLSKNHIS--DLRALRGLKNLDVLEL 205
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 91 KLEFVDDRAFRGVTNMDE--------LDLSDNLLST--VPSLIYIPYLKSINLAHNPIHQ 140
+LE + D + R +T++ + L LS N +S +P + ++ L+ + L+HN I
Sbjct: 31 ELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS 90
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + F + Y+D+S+ ++ I
Sbjct: 91 LDFHVFLFNQDLEYLDVSHNRLQNI 115
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 38 VECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97
V+ +RN +P+ + T+ L LS N+I+ L+ ++ ++ L L ++ +D
Sbjct: 36 VDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDI--SFLSELRVLRLSHNRIRSLDF 93
Query: 98 RAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHN 136
F +++ LD+S N L + S + L+ ++L+ N
Sbjct: 94 HVFLFNQDLEYLDVSHNRLQNI-SCCPMASLRHLDLSFN 131
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 26/86 (30%)
Query: 106 MDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+D++ +++ + +V + Y+P L S+NL++N I IS I+Y
Sbjct: 46 IDQIIANNSDIKSVQGIQYLPNLTSLNLSNNQITDISP--------IQY----------- 86
Query: 166 YSEAFYGIDKIDTLKLNGNKLASLKP 191
+ + L LNGNKL +KP
Sbjct: 87 -------LPNVTKLFLNGNKLTDIKP 105
>pdb|2YRO|A Chain A, Solution Structure Of The C-Terminal Gal-Bind Lectin
Protein From Human Galectin-8
Length = 155
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 12/62 (19%)
Query: 145 SFQSTPG----------IRYIDMSNCQIHTI-YSEAFYGIDKIDTLKLNGNKLASLKPRT 193
SF +PG +R ++ +H++ Y F + IDTL++NG+ + L+ R+
Sbjct: 90 SFPFSPGMYFEMIIYCDVREFKVAVNGVHSLEYKHRFKELSSIDTLEINGD-IHLLEVRS 148
Query: 194 WS 195
WS
Sbjct: 149 WS 150
>pdb|1ZXM|A Chain A, Human Topo Iia Atpase/amp-pnp
pdb|1ZXM|B Chain B, Human Topo Iia Atpase/amp-pnp
pdb|1ZXN|A Chain A, Human Dna Topoisomerase Iia AtpaseADP
pdb|1ZXN|B Chain B, Human Dna Topoisomerase Iia AtpaseADP
pdb|1ZXN|C Chain C, Human Dna Topoisomerase Iia AtpaseADP
pdb|1ZXN|D Chain D, Human Dna Topoisomerase Iia AtpaseADP
Length = 400
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 15/117 (12%)
Query: 60 DLSSNNINVLQKEIFLQM--------GITNIQKLYLRKCKLEFVDDRAFRGVTNM---DE 108
DLS + L K+I M G T K++L KL + FR +M D+
Sbjct: 194 DLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLPV---KGFRSYVDMYLKDK 250
Query: 109 LDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSY-SFQSTPGIRYIDMSNCQIHT 164
LD + N L + + + + ++ QIS S ++ G R++D QI T
Sbjct: 251 LDETGNSLKVIHEQVNHRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVT 307
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 106 MDELDLSDNLLSTVPSLI---YIPYLKSINLAHNPIHQISSYSFQS---TP----GIRYI 155
++ L + N L +P++ + +I+ ++N I + +F TP + I
Sbjct: 379 VENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438
Query: 156 DMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
++SN QI E F + ++ L GN L +
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLXGNXLTEI 472
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,300,346
Number of Sequences: 62578
Number of extensions: 201328
Number of successful extensions: 825
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 421
Number of HSP's gapped (non-prelim): 265
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)