Query psy14767
Match_columns 195
No_of_seqs 151 out of 1824
Neff 10.5
Searched_HMMs 29240
Date Fri Aug 16 20:06:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14767.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14767hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v9t_B SLIT homolog 2 protein 100.0 1.5E-29 5E-34 183.4 16.6 163 19-187 1-165 (220)
2 2v70_A SLIT-2, SLIT homolog 2 100.0 1.8E-28 6.3E-33 177.6 15.6 163 20-188 2-167 (220)
3 3m19_A Variable lymphocyte rec 100.0 1.1E-27 3.9E-32 176.6 15.6 170 21-194 2-175 (251)
4 2xot_A Amphoterin-induced prot 100.0 2.5E-27 8.6E-32 183.4 17.1 171 17-192 6-181 (361)
5 2o6s_A Variable lymphocyte rec 100.0 5.8E-27 2E-31 168.2 17.3 163 23-191 1-165 (208)
6 1ozn_A Reticulon 4 receptor; N 100.0 4.6E-27 1.6E-31 176.3 17.3 170 22-194 1-173 (285)
7 3zyj_A Leucine-rich repeat-con 99.9 1.8E-26 6.2E-31 182.9 18.2 168 19-190 31-201 (440)
8 3zyi_A Leucine-rich repeat-con 99.9 1.9E-26 6.6E-31 183.3 18.2 167 20-190 43-212 (452)
9 4g8a_A TOLL-like receptor 4; l 99.9 3.8E-27 1.3E-31 193.5 14.6 170 21-194 21-193 (635)
10 2o6q_A Variable lymphocyte rec 99.9 1.1E-25 3.6E-30 167.8 17.7 167 24-194 9-177 (270)
11 2id5_A Lingo-1, leucine rich r 99.9 2.2E-26 7.4E-31 184.0 14.7 168 21-192 1-170 (477)
12 2z80_A TOLL-like receptor 2, v 99.9 2E-26 6.8E-31 177.8 12.4 182 8-194 9-194 (353)
13 3e6j_A Variable lymphocyte rec 99.9 4.2E-25 1.5E-29 160.8 16.2 162 21-189 11-174 (229)
14 2xwt_C Thyrotropin receptor; s 99.9 1.1E-25 3.9E-30 164.7 12.6 166 21-194 2-176 (239)
15 1p9a_G Platelet glycoprotein I 99.9 1.8E-24 6.3E-29 162.7 18.2 164 26-193 3-167 (290)
16 2z62_A TOLL-like receptor 4, v 99.9 5.2E-24 1.8E-28 159.0 14.8 164 26-193 2-168 (276)
17 2z66_A Variable lymphocyte rec 99.9 1.6E-24 5.4E-29 164.0 12.0 166 23-194 1-195 (306)
18 1xku_A Decorin; proteoglycan, 99.9 1.5E-23 5.2E-28 160.2 16.6 167 19-192 21-189 (330)
19 2wfh_A SLIT homolog 2 protein 99.9 9.9E-24 3.4E-28 149.8 14.4 137 21-164 2-140 (193)
20 3v47_A TOLL-like receptor 5B a 99.9 8.8E-24 3E-28 167.8 15.7 168 20-194 1-174 (455)
21 2ft3_A Biglycan; proteoglycan, 99.9 1.7E-23 6E-28 160.0 16.1 164 20-191 24-189 (332)
22 3t6q_A CD180 antigen; protein- 99.9 3.5E-24 1.2E-28 175.7 12.3 167 21-191 2-170 (606)
23 3vq2_A TLR4, TOLL-like recepto 99.9 1.6E-23 5.5E-28 171.8 15.9 165 26-194 6-173 (606)
24 1w8a_A SLIT protein; signaling 99.9 2.2E-23 7.4E-28 147.9 13.8 138 22-165 1-141 (192)
25 4ay9_X Follicle-stimulating ho 99.9 2.5E-23 8.7E-28 160.3 13.5 166 22-194 1-198 (350)
26 2o6r_A Variable lymphocyte rec 99.9 6.8E-23 2.3E-27 143.4 14.0 139 23-167 1-141 (177)
27 2z63_A TOLL-like receptor 4, v 99.9 5.4E-23 1.9E-27 167.3 14.5 165 25-193 1-168 (570)
28 2o6q_A Variable lymphocyte rec 99.9 3.1E-22 1.1E-26 149.0 17.1 158 35-194 39-201 (270)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6E-23 2.1E-27 167.2 12.7 164 21-193 22-190 (562)
30 1ziw_A TOLL-like receptor 3; i 99.9 5E-23 1.7E-27 170.9 12.0 161 26-192 1-163 (680)
31 3m19_A Variable lymphocyte rec 99.9 8.6E-22 2.9E-26 145.1 16.3 154 34-189 36-194 (251)
32 1ozn_A Reticulon 4 receptor; N 99.9 3E-21 1E-25 144.7 16.6 157 35-193 34-196 (285)
33 2z80_A TOLL-like receptor 2, v 99.9 6.6E-22 2.2E-26 152.5 10.3 185 3-189 7-213 (353)
34 3rfs_A Internalin B, repeat mo 99.9 9.9E-21 3.4E-25 141.0 16.1 152 36-189 66-220 (272)
35 2z81_A CD282 antigen, TOLL-lik 99.9 1.5E-21 5.2E-26 158.3 12.2 155 38-194 10-168 (549)
36 3rfs_A Internalin B, repeat mo 99.9 1.2E-20 4E-25 140.7 15.7 156 35-194 43-201 (272)
37 3zyj_A Leucine-rich repeat-con 99.9 1.5E-20 5.1E-25 149.0 17.2 158 35-194 90-275 (440)
38 1p9a_G Platelet glycoprotein I 99.9 1.7E-20 5.9E-25 141.0 15.3 156 34-194 32-192 (290)
39 3zyi_A Leucine-rich repeat-con 99.9 2.3E-20 8E-25 148.3 16.8 158 35-194 101-286 (452)
40 2xwt_C Thyrotropin receptor; s 99.9 6.7E-21 2.3E-25 139.3 12.6 158 34-194 32-225 (239)
41 3j0a_A TOLL-like receptor 5; m 99.9 1.1E-20 3.7E-25 160.5 14.7 160 27-193 2-167 (844)
42 2z62_A TOLL-like receptor 4, v 99.8 2.1E-20 7.3E-25 139.4 13.5 136 35-172 30-171 (276)
43 2v9t_B SLIT homolog 2 protein 99.8 3.2E-20 1.1E-24 134.2 13.8 133 57-194 14-148 (220)
44 2z66_A Variable lymphocyte rec 99.8 3.1E-20 1.1E-24 140.4 13.5 158 35-194 80-243 (306)
45 1xku_A Decorin; proteoglycan, 99.8 1.4E-19 4.6E-24 138.3 16.7 152 35-189 102-255 (330)
46 2r9u_A Variable lymphocyte rec 99.8 3.3E-20 1.1E-24 129.4 12.0 117 19-141 2-120 (174)
47 2z7x_B TOLL-like receptor 1, v 99.8 4E-20 1.4E-24 149.1 13.0 154 35-194 2-160 (520)
48 2v70_A SLIT-2, SLIT homolog 2 99.8 7.1E-20 2.4E-24 132.4 12.6 134 57-195 14-150 (220)
49 3g39_A Variable lymphocyte rec 99.8 5.5E-20 1.9E-24 127.9 11.4 113 22-140 2-116 (170)
50 2id5_A Lingo-1, leucine rich r 99.8 6.8E-20 2.3E-24 146.4 13.5 158 35-194 34-196 (477)
51 3o6n_A APL1; leucine-rich repe 99.8 2E-19 6.8E-24 140.3 14.1 135 54-190 45-181 (390)
52 4g8a_A TOLL-like receptor 4; l 99.8 1.5E-19 5.1E-24 148.4 13.6 159 34-194 53-221 (635)
53 2ft3_A Biglycan; proteoglycan, 99.8 2.2E-19 7.6E-24 137.2 13.6 157 35-194 104-284 (332)
54 3oja_B Anopheles plasmodium-re 99.8 2.4E-19 8.3E-24 147.0 14.5 136 54-191 51-188 (597)
55 3t6q_A CD180 antigen; protein- 99.8 3.8E-19 1.3E-23 145.8 15.2 159 34-194 34-199 (606)
56 2xot_A Amphoterin-induced prot 99.8 1.1E-19 3.6E-24 140.7 11.2 151 35-187 41-202 (361)
57 2o6s_A Variable lymphocyte rec 99.8 7.2E-19 2.5E-23 125.9 14.0 133 57-194 10-144 (208)
58 1ogq_A PGIP-2, polygalacturona 99.8 2.9E-19 1E-23 135.7 12.6 155 34-191 51-214 (313)
59 3e6j_A Variable lymphocyte rec 99.8 5.9E-19 2E-23 128.3 13.6 134 55-194 20-155 (229)
60 3o6n_A APL1; leucine-rich repe 99.8 2.8E-19 9.7E-24 139.4 12.5 130 35-166 47-181 (390)
61 1w8a_A SLIT protein; signaling 99.8 4.5E-19 1.5E-23 125.6 12.2 128 57-189 11-141 (192)
62 2z63_A TOLL-like receptor 4, v 99.8 6E-19 2.1E-23 143.5 13.7 158 35-194 30-197 (570)
63 3vq2_A TLR4, TOLL-like recepto 99.8 4.7E-19 1.6E-23 145.3 13.1 159 34-194 33-201 (606)
64 3o53_A Protein LRIM1, AGAP0063 99.8 7.4E-19 2.5E-23 133.6 13.0 148 36-187 102-250 (317)
65 2o6r_A Variable lymphocyte rec 99.8 9.9E-19 3.4E-23 122.1 12.6 130 56-190 9-140 (177)
66 4fcg_A Uncharacterized protein 99.8 4.4E-19 1.5E-23 135.5 11.3 75 35-113 83-159 (328)
67 3oja_B Anopheles plasmodium-re 99.8 5.9E-19 2E-23 144.7 12.4 128 36-165 54-186 (597)
68 2wfh_A SLIT homolog 2 protein 99.8 7.6E-19 2.6E-23 124.5 11.4 125 57-187 13-139 (193)
69 3v47_A TOLL-like receptor 5B a 99.8 1.4E-18 4.8E-23 137.9 13.6 136 54-191 275-412 (455)
70 4fcg_A Uncharacterized protein 99.8 1.1E-18 3.6E-23 133.4 11.7 155 35-193 106-296 (328)
71 1ziw_A TOLL-like receptor 3; i 99.8 1.3E-18 4.4E-23 144.5 13.2 159 34-194 26-191 (680)
72 2z81_A CD282 antigen, TOLL-lik 99.8 7.3E-19 2.5E-23 142.5 10.1 167 21-189 2-211 (549)
73 4ezg_A Putative uncharacterize 99.8 2.6E-18 8.9E-23 122.0 11.7 146 35-189 46-196 (197)
74 1ogq_A PGIP-2, polygalacturona 99.8 1.1E-18 3.8E-23 132.5 10.4 102 36-139 79-187 (313)
75 2ell_A Acidic leucine-rich nuc 99.8 1E-18 3.5E-23 121.0 9.2 141 47-192 17-165 (168)
76 3oja_A Leucine-rich immune mol 99.8 3.3E-18 1.1E-22 137.2 13.0 147 37-187 103-250 (487)
77 1xeu_A Internalin C; cellular 99.8 3.3E-18 1.1E-22 126.9 10.9 147 34-191 42-189 (263)
78 1h6u_A Internalin H; cell adhe 99.8 1E-17 3.5E-22 126.9 13.8 144 36-190 66-211 (308)
79 1h6t_A Internalin B; cell adhe 99.8 1.1E-17 3.8E-22 125.8 13.4 146 35-190 48-194 (291)
80 3rgz_A Protein brassinosteroid 99.8 3.7E-18 1.3E-22 143.7 11.6 80 36-117 469-551 (768)
81 3cvr_A Invasion plasmid antige 99.8 1.4E-17 4.8E-22 135.4 14.3 138 34-191 60-197 (571)
82 1h6u_A Internalin H; cell adhe 99.8 1.7E-17 5.8E-22 125.7 13.8 147 35-191 43-190 (308)
83 3o53_A Protein LRIM1, AGAP0063 99.7 7.2E-18 2.5E-22 128.2 10.9 147 36-192 83-232 (317)
84 1wwl_A Monocyte differentiatio 99.7 4.7E-18 1.6E-22 128.9 9.3 152 36-190 98-269 (312)
85 4ay9_X Follicle-stimulating ho 99.7 2.8E-17 9.5E-22 126.6 12.8 158 34-194 31-222 (350)
86 1xeu_A Internalin C; cellular 99.7 3.1E-17 1.1E-21 121.6 12.4 141 38-189 24-165 (263)
87 3rgz_A Protein brassinosteroid 99.7 1.5E-17 5.1E-22 140.0 11.7 156 35-192 396-556 (768)
88 1wwl_A Monocyte differentiatio 99.7 8.7E-18 3E-22 127.4 9.3 152 35-191 123-291 (312)
89 2z7x_B TOLL-like receptor 1, v 99.7 6.3E-17 2.1E-21 130.5 14.5 134 54-192 324-462 (520)
90 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 9.7E-17 3.3E-21 130.6 15.8 131 54-187 353-510 (562)
91 3oja_A Leucine-rich immune mol 99.7 1.6E-17 5.6E-22 133.1 11.0 150 35-192 60-232 (487)
92 1h6t_A Internalin B; cell adhe 99.7 2.7E-17 9.3E-22 123.6 11.3 148 34-191 69-217 (291)
93 3g06_A SSPH2 (leucine-rich rep 99.7 2.4E-17 8.4E-22 135.3 11.4 153 22-191 30-198 (622)
94 4glp_A Monocyte differentiatio 99.7 1.6E-17 5.6E-22 125.8 8.3 149 36-189 94-287 (310)
95 4fmz_A Internalin; leucine ric 99.7 8.6E-17 2.9E-21 123.4 12.1 148 36-191 180-328 (347)
96 4eco_A Uncharacterized protein 99.7 2.2E-16 7.5E-21 130.4 15.1 135 55-192 434-584 (636)
97 4eco_A Uncharacterized protein 99.7 1.3E-16 4.4E-21 131.8 12.7 157 36-193 380-561 (636)
98 3cvr_A Invasion plasmid antige 99.7 1.6E-16 5.5E-21 129.2 13.0 137 34-191 81-224 (571)
99 1m9s_A Internalin B; cell inva 99.7 1E-16 3.5E-21 131.4 11.9 146 36-191 68-214 (605)
100 4fmz_A Internalin; leucine ric 99.7 1.3E-16 4.4E-21 122.4 11.3 146 35-188 201-347 (347)
101 1a9n_A U2A', U2A'; complex (nu 99.7 7E-17 2.4E-21 112.6 8.7 128 54-186 19-152 (176)
102 4ecn_A Leucine-rich repeat pro 99.7 5.6E-16 1.9E-20 131.4 15.8 135 55-192 674-824 (876)
103 4ezg_A Putative uncharacterize 99.7 2.8E-16 9.5E-21 111.5 11.5 129 54-190 44-175 (197)
104 4glp_A Monocyte differentiatio 99.7 6.5E-17 2.2E-21 122.5 8.6 148 35-189 147-309 (310)
105 3j0a_A TOLL-like receptor 5; m 99.7 2.6E-16 8.7E-21 133.8 12.7 156 34-191 25-191 (844)
106 2ifg_A High affinity nerve gro 99.7 1.4E-16 4.9E-21 122.3 10.0 110 23-139 1-116 (347)
107 2je0_A Acidic leucine-rich nuc 99.7 3.3E-17 1.1E-21 111.2 5.7 126 53-183 16-149 (149)
108 1m9s_A Internalin B; cell inva 99.7 3.8E-16 1.3E-20 128.0 13.0 146 35-190 45-191 (605)
109 3g39_A Variable lymphocyte rec 99.6 1.4E-15 4.7E-20 105.6 11.0 106 56-166 11-118 (170)
110 1o6v_A Internalin A; bacterial 99.6 2E-15 7E-20 120.3 13.5 127 55-191 266-392 (466)
111 4ecn_A Leucine-rich repeat pro 99.6 4.3E-16 1.5E-20 132.1 9.9 151 35-190 450-635 (876)
112 1o6v_A Internalin A; bacterial 99.6 2E-15 6.9E-20 120.3 13.1 127 55-191 244-370 (466)
113 4b8c_D Glucose-repressible alc 99.6 1.1E-16 3.9E-21 133.8 5.5 116 71-191 217-333 (727)
114 3bz5_A Internalin-J, INLJ; leu 99.6 1E-14 3.6E-19 116.0 15.8 148 35-194 87-253 (457)
115 3sb4_A Hypothetical leucine ri 99.6 3.2E-15 1.1E-19 114.1 12.3 91 103-195 225-318 (329)
116 2r9u_A Variable lymphocyte rec 99.6 3.1E-15 1.1E-19 104.1 11.3 105 57-166 15-121 (174)
117 2ell_A Acidic leucine-rich nuc 99.6 1.1E-15 3.8E-20 105.6 8.1 129 35-167 26-164 (168)
118 4b8c_D Glucose-repressible alc 99.6 1.2E-16 3.9E-21 133.8 3.4 134 54-192 224-359 (727)
119 1jl5_A Outer protein YOPM; leu 99.6 2E-14 6.7E-19 114.3 15.1 144 35-190 73-231 (454)
120 1jl5_A Outer protein YOPM; leu 99.6 3.4E-14 1.2E-18 112.9 15.2 140 36-190 114-253 (454)
121 3bz5_A Internalin-J, INLJ; leu 99.6 5.2E-14 1.8E-18 112.0 16.0 143 34-190 65-228 (457)
122 3g06_A SSPH2 (leucine-rich rep 99.6 5.6E-15 1.9E-19 121.4 10.5 81 104-191 221-301 (622)
123 2je0_A Acidic leucine-rich nuc 99.6 3.6E-15 1.2E-19 101.0 7.0 113 79-191 16-130 (149)
124 1a9n_A U2A', U2A'; complex (nu 99.6 7.7E-15 2.6E-19 102.2 8.5 112 78-191 17-130 (176)
125 3sb4_A Hypothetical leucine ri 99.6 1.6E-14 5.4E-19 110.2 10.9 68 126-195 226-294 (329)
126 1dce_A Protein (RAB geranylger 99.6 1.2E-14 4.2E-19 118.4 9.6 108 81-192 442-551 (567)
127 1dce_A Protein (RAB geranylger 99.5 1.7E-14 5.7E-19 117.6 9.6 122 55-181 442-567 (567)
128 3goz_A Leucine-rich repeat-con 99.5 1.8E-14 6.1E-19 111.3 3.2 138 54-191 80-242 (362)
129 1ds9_A Outer arm dynein; leuci 99.5 1.9E-16 6.6E-21 112.4 -7.3 140 44-190 36-188 (198)
130 2ifg_A High affinity nerve gro 99.5 5.4E-13 1.8E-17 102.3 11.1 103 58-165 12-118 (347)
131 3goz_A Leucine-rich repeat-con 99.5 3.1E-14 1.1E-18 110.0 3.9 155 35-189 24-211 (362)
132 1ds9_A Outer arm dynein; leuci 99.4 1.3E-16 4.5E-21 113.3 -9.0 129 55-190 24-156 (198)
133 2ast_B S-phase kinase-associat 99.4 1.2E-14 4.2E-19 110.8 1.1 103 35-139 72-182 (336)
134 2ca6_A RAN GTPase-activating p 99.4 5.5E-14 1.9E-18 109.4 1.7 92 99-190 211-319 (386)
135 4fdw_A Leucine rich hypothetic 99.4 1.1E-11 3.8E-16 96.9 14.5 101 91-194 258-365 (401)
136 2ast_B S-phase kinase-associat 99.4 9.5E-14 3.3E-18 105.9 1.0 148 35-185 95-258 (336)
137 2ca6_A RAN GTPase-activating p 99.4 3.5E-13 1.2E-17 104.8 4.2 153 34-188 95-288 (386)
138 4fdw_A Leucine rich hypothetic 99.3 2.4E-11 8.1E-16 95.1 13.5 145 44-194 167-342 (401)
139 3un9_A NLR family member X1; l 99.2 1.4E-12 4.8E-17 101.1 1.2 153 35-188 74-253 (372)
140 1z7x_W Ribonuclease inhibitor; 99.2 2.7E-12 9.2E-17 101.8 2.6 151 36-188 6-184 (461)
141 3rfe_A Platelet glycoprotein I 99.2 1.7E-11 5.9E-16 81.0 6.1 65 22-92 1-67 (130)
142 1z7x_W Ribonuclease inhibitor; 99.2 1.1E-12 3.8E-17 104.0 -0.3 64 125-188 340-412 (461)
143 3un9_A NLR family member X1; l 99.1 5.5E-12 1.9E-16 97.8 -0.5 137 52-188 70-225 (372)
144 4h09_A Hypothetical leucine ri 98.9 2E-08 6.7E-13 77.8 11.6 133 55-194 218-352 (379)
145 3ogk_B Coronatine-insensitive 98.7 2.6E-09 9E-14 87.1 0.7 66 125-190 462-529 (592)
146 4gt6_A Cell surface protein; l 98.6 4.1E-07 1.4E-11 70.8 11.6 114 65-184 252-367 (394)
147 4h09_A Hypothetical leucine ri 98.6 6.7E-07 2.3E-11 69.1 12.0 116 54-175 240-357 (379)
148 3ogk_B Coronatine-insensitive 98.6 4.3E-08 1.5E-12 79.9 4.6 84 55-140 139-234 (592)
149 1io0_A Tropomodulin; LRR prote 98.6 1.4E-08 4.9E-13 71.0 1.5 110 78-187 34-164 (185)
150 4fs7_A Uncharacterized protein 98.5 1.1E-06 3.8E-11 68.3 11.1 123 55-184 72-195 (394)
151 2p1m_B Transport inhibitor res 98.5 1.4E-08 4.9E-13 82.8 0.1 85 101-186 429-518 (594)
152 4fs7_A Uncharacterized protein 98.5 2.2E-06 7.7E-11 66.6 12.0 101 78-184 274-376 (394)
153 4gt6_A Cell surface protein; l 98.5 1.7E-06 5.7E-11 67.4 11.0 124 54-186 265-390 (394)
154 2ra8_A Uncharacterized protein 98.4 1.9E-07 6.6E-12 72.0 3.7 129 54-187 172-320 (362)
155 2p1m_B Transport inhibitor res 98.3 1.8E-07 6.1E-12 76.3 2.7 127 55-184 106-245 (594)
156 1io0_A Tropomodulin; LRR prote 98.3 7.3E-08 2.5E-12 67.3 -0.9 111 54-164 36-165 (185)
157 3rw6_A Nuclear RNA export fact 98.2 1.4E-07 4.7E-12 69.6 0.1 79 101-180 167-257 (267)
158 3rw6_A Nuclear RNA export fact 98.2 1.7E-06 5.9E-11 63.7 5.2 79 109-188 148-234 (267)
159 2ra8_A Uncharacterized protein 98.0 4.2E-06 1.4E-10 64.5 4.5 149 35-185 174-341 (362)
160 3rfe_A Platelet glycoprotein I 97.9 2.8E-05 9.5E-10 51.0 6.3 56 107-163 11-68 (130)
161 3e4g_A ATP synthase subunit S, 97.8 4.2E-06 1.4E-10 57.7 0.5 85 80-164 61-154 (176)
162 3e4g_A ATP synthase subunit S, 97.7 9.8E-06 3.3E-10 55.8 1.0 82 54-137 61-150 (176)
163 1pgv_A TMD-1, tropomodulin TMD 97.6 4.2E-05 1.4E-09 53.6 3.3 107 79-185 40-168 (197)
164 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00039 1.3E-08 48.7 1.8 86 100-185 37-137 (197)
165 2lz0_A Uncharacterized protein 93.1 0.18 6.2E-06 31.0 4.7 46 114-160 6-53 (100)
166 2lz0_A Uncharacterized protein 91.4 0.31 1E-05 29.9 4.3 46 65-113 7-52 (100)
167 2ljs_A Trypsin inhibitor 3; be 38.2 8.7 0.0003 17.2 0.4 11 21-31 15-25 (30)
168 2hm3_A Nematocyst outer WALL a 22.7 31 0.001 15.2 0.7 10 20-29 5-14 (31)
No 1
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.97 E-value=1.5e-29 Score=183.40 Aligned_cols=163 Identities=21% Similarity=0.431 Sum_probs=153.9
Q ss_pred cCCCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccc
Q psy14767 19 TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR 98 (195)
Q Consensus 19 ~~~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~ 98 (195)
++.+||..|.|. ...++|++++++.+|..++++++.|++++|.|+.+++..|. ++++|+.|++++|.++.+.+.
T Consensus 1 ~~~~CP~~C~C~----~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~--~l~~L~~L~Ls~N~i~~~~~~ 74 (220)
T 2v9t_B 1 GSLHCPAACTCS----NNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFS--PYKKLRRIDLSNNQISELAPD 74 (220)
T ss_dssp CCCCSCTTSEEE----TTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSST--TCTTCCEEECCSSCCCEECTT
T ss_pred CCCCCCCCCEEC----CCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhh--CCCCCCEEECCCCcCCCcCHH
Confidence 357899999998 47899999999999999999999999999999999998887 789999999999999999999
Q ss_pred ccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCC
Q psy14767 99 AFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176 (195)
Q Consensus 99 ~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l 176 (195)
+|.++++|+.|++++|.++.++...+ +++|+.|++++|+++.+++..|..+++|++|++++|+++++++..+..+++|
T Consensus 75 ~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 154 (220)
T 2v9t_B 75 AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154 (220)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC
Confidence 99999999999999999999999876 8999999999999999999899999999999999999999998889999999
Q ss_pred cEEEcCCCCCC
Q psy14767 177 DTLKLNGNKLA 187 (195)
Q Consensus 177 ~~l~l~~n~l~ 187 (195)
+.|++++|++.
T Consensus 155 ~~L~L~~N~~~ 165 (220)
T 2v9t_B 155 QTMHLAQNPFI 165 (220)
T ss_dssp CEEECCSSCEE
T ss_pred CEEEeCCCCcC
Confidence 99999999875
No 2
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.96 E-value=1.8e-28 Score=177.63 Aligned_cols=163 Identities=28% Similarity=0.500 Sum_probs=150.0
Q ss_pred CCCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccch-hhhhccCCCCccEEEeecCCcceeccc
Q psy14767 20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQK-EIFLQMGITNIQKLYLRKCKLEFVDDR 98 (195)
Q Consensus 20 ~~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~-~~~~~~~l~~L~~l~l~~n~i~~~~~~ 98 (195)
..+||..|.|.+ +.++|+++.++.+|..++..++.|++++|.++.+++ ..|. .+++|+.|++++|.++.+++.
T Consensus 2 ~~~CP~~C~C~~----~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~--~l~~L~~L~L~~N~i~~i~~~ 75 (220)
T 2v70_A 2 SLACPEKCRCEG----TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFK--KLPQLRKINFSNNKITDIEEG 75 (220)
T ss_dssp --CCCTTCEEET----TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGG--GCTTCCEEECCSSCCCEECTT
T ss_pred CCCCCCCCEECC----CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhc--cCCCCCEEECCCCcCCEECHH
Confidence 468999999994 689999999999999999999999999999998854 5566 789999999999999999998
Q ss_pred ccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCC
Q psy14767 99 AFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176 (195)
Q Consensus 99 ~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l 176 (195)
+|.++++|+.|++++|.++.++...+ +++|+.|++++|.++.+.+..|..+++|++|++++|+++++.+..+..+++|
T Consensus 76 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 155 (220)
T 2v70_A 76 AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTC
T ss_pred HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCC
Confidence 99999999999999999999988766 8999999999999999988899999999999999999999988899999999
Q ss_pred cEEEcCCCCCCC
Q psy14767 177 DTLKLNGNKLAS 188 (195)
Q Consensus 177 ~~l~l~~n~l~~ 188 (195)
+.|++++|+++.
T Consensus 156 ~~L~L~~N~l~c 167 (220)
T 2v70_A 156 STLNLLANPFNC 167 (220)
T ss_dssp CEEECCSCCEEC
T ss_pred CEEEecCcCCcC
Confidence 999999999864
No 3
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.95 E-value=1.1e-27 Score=176.65 Aligned_cols=170 Identities=26% Similarity=0.511 Sum_probs=154.4
Q ss_pred CCCCCC--CeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccc
Q psy14767 21 ASCPLG--CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR 98 (195)
Q Consensus 21 ~~c~~~--c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~ 98 (195)
.+||.. |.|.. +.+.++|+++.++.+|.++++.++.|++++|.++.+.+..+. ++++|++|++++|.++.+.+.
T Consensus 2 ~~Cp~~~gC~C~~--~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~ 77 (251)
T 3m19_A 2 KTCETVTGCTCNE--GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFR--GLTKLTWLNLDYNQLQTLSAG 77 (251)
T ss_dssp --CHHHHSSEEEG--GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTT
T ss_pred ccCCCCCceEcCC--CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhc--CcccCCEEECCCCcCCccCHh
Confidence 368875 99963 247899999999999999999999999999999999998887 789999999999999999998
Q ss_pred ccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCC
Q psy14767 99 AFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176 (195)
Q Consensus 99 ~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l 176 (195)
.|..+++|+.|++++|.++.++...+ +++|+.|++++|.++.+++..|..+++|++|++++|+++++++..+..+++|
T Consensus 78 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence 89999999999999999999887776 8899999999999999998888899999999999999999988889999999
Q ss_pred cEEEcCCCCCCCCCCCCC
Q psy14767 177 DTLKLNGNKLASLKPRTW 194 (195)
Q Consensus 177 ~~l~l~~n~l~~~~~~~~ 194 (195)
+.|++++|+++++++..|
T Consensus 158 ~~L~L~~N~l~~~~~~~~ 175 (251)
T 3m19_A 158 QTLSLSTNQLQSVPHGAF 175 (251)
T ss_dssp CEEECCSSCCSCCCTTTT
T ss_pred CEEECCCCcCCccCHHHH
Confidence 999999999999998765
No 4
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.95 E-value=2.5e-27 Score=183.44 Aligned_cols=171 Identities=29% Similarity=0.457 Sum_probs=154.8
Q ss_pred hccCCCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceec
Q psy14767 17 SVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96 (195)
Q Consensus 17 ~~~~~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~ 96 (195)
..+..+||..|.|. .+.++|++++++.+|..++..++.|++++|.++.+++..+.. ++++|+.|++++|.|+.++
T Consensus 6 ~~~~~~Cp~~C~C~----~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~-~l~~L~~L~L~~N~i~~i~ 80 (361)
T 2xot_A 6 GRSVVSCPANCLCA----SNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPT-RLTNLHSLLLSHNHLNFIS 80 (361)
T ss_dssp -CCCTTCCTTCEEE----TTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSS-CCTTCCEEECCSSCCCEEC
T ss_pred CCcCCCCCCCCEEC----CCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhh-cccccCEEECCCCcCCccC
Confidence 45567899999998 468999999999999999999999999999999998887631 4789999999999999999
Q ss_pred ccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccc---c
Q psy14767 97 DRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF---Y 171 (195)
Q Consensus 97 ~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~ 171 (195)
+.+|.++++|+.|++++|+++.++...+ +++|+.|++++|.++.+.+..|..+++|+.|++++|++++++...+ .
T Consensus 81 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~ 160 (361)
T 2xot_A 81 SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160 (361)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC---
T ss_pred hhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcc
Confidence 9999999999999999999999988776 8999999999999999998899999999999999999999988777 5
Q ss_pred CCCCCcEEEcCCCCCCCCCCC
Q psy14767 172 GIDKIDTLKLNGNKLASLKPR 192 (195)
Q Consensus 172 ~l~~l~~l~l~~n~l~~~~~~ 192 (195)
.+++|+.|++++|++++++++
T Consensus 161 ~l~~L~~L~L~~N~l~~l~~~ 181 (361)
T 2xot_A 161 KLPKLMLLDLSSNKLKKLPLT 181 (361)
T ss_dssp -CTTCCEEECCSSCCCCCCHH
T ss_pred cCCcCCEEECCCCCCCccCHH
Confidence 689999999999999998753
No 5
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.95 E-value=5.8e-27 Score=168.19 Aligned_cols=163 Identities=26% Similarity=0.498 Sum_probs=151.5
Q ss_pred CCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCC
Q psy14767 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102 (195)
Q Consensus 23 c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~ 102 (195)
||..|.|.| ..++|.+++++.+|.+++++++.|++++|.++.+++..+. .+++|++|++++|.++.+++..|..
T Consensus 1 Cp~~C~C~~----~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (208)
T 2o6s_A 1 CPSRCSCSG----TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFD--ELTSLTQLYLGGNKLQSLPNGVFNK 74 (208)
T ss_dssp CCTTCEEET----TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CcCCCEECC----CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhc--ccccCcEEECCCCccCccChhhcCC
Confidence 899999984 7899999999999999999999999999999999988887 7899999999999999998888999
Q ss_pred CCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEE
Q psy14767 103 VTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLK 180 (195)
Q Consensus 103 l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~ 180 (195)
+++|+.|++++|.++.++...+ +++|+.|++++|.++.+++..+..+++|++|++++|+++++++..+..+++|+.|+
T Consensus 75 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence 9999999999999999888765 88999999999999999988889999999999999999999888899999999999
Q ss_pred cCCCCCCCCCC
Q psy14767 181 LNGNKLASLKP 191 (195)
Q Consensus 181 l~~n~l~~~~~ 191 (195)
+++|++.+..+
T Consensus 155 l~~N~~~~~~~ 165 (208)
T 2o6s_A 155 LHDNPWDCTCP 165 (208)
T ss_dssp CCSCCBCCCTT
T ss_pred ecCCCeecCCC
Confidence 99998876544
No 6
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=4.6e-27 Score=176.34 Aligned_cols=170 Identities=25% Similarity=0.494 Sum_probs=134.4
Q ss_pred CCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccC
Q psy14767 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101 (195)
Q Consensus 22 ~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~ 101 (195)
+||..|.|.... ...++|++.+++.+|.+++++++.|++++|.++.+++..+. .+++|++|++++|.++.+.+.+|.
T Consensus 1 ~CP~~C~C~~~~-~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~ 77 (285)
T 1ozn_A 1 PCPGACVCYNEP-KVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFR--ACRNLTILWLHSNVLARIDAAAFT 77 (285)
T ss_dssp CCCTTCEEECSS-SCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTT
T ss_pred CcCCCceECCCC-CeEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcc--cCCCCCEEECCCCccceeCHhhcC
Confidence 599999998432 47899999999999999999999999999999999888776 788999999999999988888888
Q ss_pred CCCCccEEEcCCCC-CCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcE
Q psy14767 102 GVTNMDELDLSDNL-LSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDT 178 (195)
Q Consensus 102 ~l~~l~~l~l~~n~-l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~ 178 (195)
++++|+.|++++|. ++.++...+ +++|+.|++++|.++.+++..+..+++|++|++++|+++++++..+..+++|+.
T Consensus 78 ~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 157 (285)
T 1ozn_A 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157 (285)
T ss_dssp TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE
Confidence 88888999998886 777755444 677777777777777776666666777777777777777666666666666777
Q ss_pred EEcCCCCCCCCCCCCC
Q psy14767 179 LKLNGNKLASLKPRTW 194 (195)
Q Consensus 179 l~l~~n~l~~~~~~~~ 194 (195)
|++++|+++++++..|
T Consensus 158 L~l~~n~l~~~~~~~~ 173 (285)
T 1ozn_A 158 LFLHGNRISSVPERAF 173 (285)
T ss_dssp EECCSSCCCEECTTTT
T ss_pred EECCCCcccccCHHHh
Confidence 7777776666665443
No 7
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.8e-26 Score=182.89 Aligned_cols=168 Identities=30% Similarity=0.592 Sum_probs=139.9
Q ss_pred cCCCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccc
Q psy14767 19 TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR 98 (195)
Q Consensus 19 ~~~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~ 98 (195)
.+..||..|.|... ...++|.+.+++.+|.+++++++.|++++|.++.+++..|. ++++|+.|++++|.++.+++.
T Consensus 31 ~~~~Cp~~C~C~~~--~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~ 106 (440)
T 3zyj_A 31 SAQTCPSVCSCSNQ--FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFK--HLRHLEILQLSRNHIRTIEIG 106 (440)
T ss_dssp --CCCCSSSEECTT--SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTS--SCSSCCEEECCSSCCCEECGG
T ss_pred ccccCCCCCEeCCC--CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhh--CCCCCCEEECCCCcCCccChh
Confidence 35689999999843 36899999999999999999999999999999999988887 789999999999999999999
Q ss_pred ccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCC-CcceeeccccccCCCC
Q psy14767 99 AFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN-CQIHTIYSEAFYGIDK 175 (195)
Q Consensus 99 ~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~ 175 (195)
+|.++++|+.|++++|.++.++...+ +++|+.|++++|.++.+++..|..+++|+.|++++ |.++.+.+..+..+++
T Consensus 107 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 186 (440)
T 3zyj_A 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186 (440)
T ss_dssp GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS
T ss_pred hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc
Confidence 99999999999999999999888766 88999999999999888877777777777777776 4456665556666666
Q ss_pred CcEEEcCCCCCCCCC
Q psy14767 176 IDTLKLNGNKLASLK 190 (195)
Q Consensus 176 l~~l~l~~n~l~~~~ 190 (195)
|+.|++++|.+++++
T Consensus 187 L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 187 LRYLNLAMCNLREIP 201 (440)
T ss_dssp CCEEECTTSCCSSCC
T ss_pred cCeecCCCCcCcccc
Confidence 666666666555544
No 8
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.9e-26 Score=183.30 Aligned_cols=167 Identities=29% Similarity=0.557 Sum_probs=144.8
Q ss_pred CCCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccc
Q psy14767 20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA 99 (195)
Q Consensus 20 ~~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~ 99 (195)
+..||..|.|... ...++|.+.+++.+|.+++++++.|++++|.++.+.+..|. .+++|+.|++++|.++.+.+.+
T Consensus 43 ~~~Cp~~C~C~~~--~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~ 118 (452)
T 3zyi_A 43 PQNCPSVCSCSNQ--FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEVGA 118 (452)
T ss_dssp -CCCCTTSEECSS--SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTT
T ss_pred cCCCCCCCEECCC--CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcC--CCCCCCEEECCCCccCCcChhh
Confidence 4689999999843 36899999999999999999999999999999999998887 8899999999999999999999
Q ss_pred cCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCC-CcceeeccccccCCCCC
Q psy14767 100 FRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN-CQIHTIYSEAFYGIDKI 176 (195)
Q Consensus 100 ~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~l 176 (195)
|.++++|+.|++++|.++.++...+ +++|+.|++++|.++.+++..|..+++|+.|++++ |.+..+++..+..+++|
T Consensus 119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 198 (452)
T 3zyi_A 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198 (452)
T ss_dssp TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC
T ss_pred ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC
Confidence 9999999999999999999988766 88999999999999988887788888888888877 45667766667777777
Q ss_pred cEEEcCCCCCCCCC
Q psy14767 177 DTLKLNGNKLASLK 190 (195)
Q Consensus 177 ~~l~l~~n~l~~~~ 190 (195)
+.|++++|.+++++
T Consensus 199 ~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 199 KYLNLGMCNIKDMP 212 (452)
T ss_dssp CEEECTTSCCSSCC
T ss_pred CEEECCCCcccccc
Confidence 77777777766654
No 9
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=3.8e-27 Score=193.54 Aligned_cols=170 Identities=20% Similarity=0.400 Sum_probs=152.5
Q ss_pred CCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccccc
Q psy14767 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF 100 (195)
Q Consensus 21 ~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 100 (195)
+.|...|.|... ...++|++.+++++|.+++++++.|+|++|.|+.+++..|. ++++|++|++++|.|+.+++++|
T Consensus 21 p~~~~~c~~~~~--~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~--~l~~L~~L~Ls~N~i~~i~~~~f 96 (635)
T 4g8a_A 21 PESWEPCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAY 96 (635)
T ss_dssp ----CCSEEEET--TTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTT
T ss_pred CCCCCCccccCC--CCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHh--CCCCCCEEECCCCcCCCcChhHh
Confidence 445567877743 46899999999999999999999999999999999999998 89999999999999999999999
Q ss_pred CCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeec-cccccCCCCCc
Q psy14767 101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY-SEAFYGIDKID 177 (195)
Q Consensus 101 ~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~l~ 177 (195)
.++++|++|++++|+++.++...+ +++|++|++++|.++.+++..|+.+++|++|++++|.++++. +..++.+++|+
T Consensus 97 ~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 176 (635)
T 4g8a_A 97 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176 (635)
T ss_dssp TTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred cCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence 999999999999999999998876 899999999999999999988999999999999999998764 56788999999
Q ss_pred EEEcCCCCCCCCCCCCC
Q psy14767 178 TLKLNGNKLASLKPRTW 194 (195)
Q Consensus 178 ~l~l~~n~l~~~~~~~~ 194 (195)
.|++++|+++++++..|
T Consensus 177 ~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 177 HLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp EEECCSSCCCEECGGGG
T ss_pred hhcccCccccccccccc
Confidence 99999999998876543
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.1e-25 Score=167.77 Aligned_cols=167 Identities=25% Similarity=0.485 Sum_probs=127.7
Q ss_pred CCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCC
Q psy14767 24 PLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103 (195)
Q Consensus 24 ~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l 103 (195)
+..|.|.. ..+.++|+++.++.+|..++++++.|++++|.++.+++..|. ++++|++|++++|.++.+++..|..+
T Consensus 9 ~~~C~c~~--~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~i~~~~~~~l 84 (270)
T 2o6q_A 9 GGVCSCNN--NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFH--RLTKLRLLYLNDNKLQTLPAGIFKEL 84 (270)
T ss_dssp TCSBEEET--TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSS--SCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred CCCCEeCC--CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhc--CCCCCCEEECCCCccCeeChhhhcCC
Confidence 35688873 347899999999999999999999999999999998887776 77889999999998888887777888
Q ss_pred CCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEc
Q psy14767 104 TNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKL 181 (195)
Q Consensus 104 ~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l 181 (195)
++|+.|++++|.++.++...+ +++|+.|++++|.++.+++..+..+++|++|++++|.++++++..+..+++|+.|++
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence 888888888888887776654 667777777777777766666666666666666666666665555666666666666
Q ss_pred CCCCCCCCCCCCC
Q psy14767 182 NGNKLASLKPRTW 194 (195)
Q Consensus 182 ~~n~l~~~~~~~~ 194 (195)
++|+++++++..|
T Consensus 165 ~~n~l~~~~~~~~ 177 (270)
T 2o6q_A 165 YNNQLKRVPEGAF 177 (270)
T ss_dssp CSSCCSCCCTTTT
T ss_pred cCCcCcEeChhHh
Confidence 6666666655443
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=2.2e-26 Score=183.99 Aligned_cols=168 Identities=27% Similarity=0.540 Sum_probs=152.3
Q ss_pred CCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccccc
Q psy14767 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF 100 (195)
Q Consensus 21 ~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 100 (195)
.+||..|.|... ...++|.+.+++.+|.+++++++.|++++|.++.+++..|. .+++|++|++++|.++.+.+.+|
T Consensus 1 ~~Cp~~C~C~~~--~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~ 76 (477)
T 2id5_A 1 TGCPPRCECSAQ--DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFA--SFPHLEELELNENIVSAVEPGAF 76 (477)
T ss_dssp CCCSTTCEEETT--TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTT
T ss_pred CcccCCCeECCC--CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHcc--CCCCCCEEECCCCccCEeChhhh
Confidence 379999999842 36899999999999999999999999999999999988887 78999999999999999999999
Q ss_pred CCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcE
Q psy14767 101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDT 178 (195)
Q Consensus 101 ~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~ 178 (195)
.++++|+.|++++|.++.++...+ +++|+.|++++|.++.+.+..+..+++|+.|++++|.++++.+..+..+++|+.
T Consensus 77 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 156 (477)
T 2id5_A 77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156 (477)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCE
T ss_pred hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCE
Confidence 999999999999999999988766 889999999999999988888888999999999999999888888888888888
Q ss_pred EEcCCCCCCCCCCC
Q psy14767 179 LKLNGNKLASLKPR 192 (195)
Q Consensus 179 l~l~~n~l~~~~~~ 192 (195)
|++++|.++++++.
T Consensus 157 L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 157 LTLEKCNLTSIPTE 170 (477)
T ss_dssp EEEESCCCSSCCHH
T ss_pred EECCCCcCcccChh
Confidence 88888888877653
No 12
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=2e-26 Score=177.79 Aligned_cols=182 Identities=23% Similarity=0.378 Sum_probs=149.4
Q ss_pred HHHHHHHhhhccCCCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEe
Q psy14767 8 SVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYL 87 (195)
Q Consensus 8 ~~~~~~~~~~~~~~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l 87 (195)
+++.+++....++..|+..|.|.+. ..++|+++.++.+|.+++++++.|++++|.++.+++..+. ++++|+.|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~C~~~---~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L 83 (353)
T 2z80_A 9 WVLGVIISLSKEESSNQASLSCDRN---GICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQ--RCVNLQALVL 83 (353)
T ss_dssp ------------------CCEECTT---SEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEEC
T ss_pred hhhhheeeccCccCCCccCCCCCCC---eEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhc--cCCCCCEEEC
Confidence 3333343444556678999999963 4599999999999999999999999999999999988887 7899999999
Q ss_pred ecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCC-CcCCCCCCCCEEecCCC-cce
Q psy14767 88 RKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISS-YSFQSTPGIRYIDMSNC-QIH 163 (195)
Q Consensus 88 ~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n-~l~ 163 (195)
++|.++.+.+.+|.++++|+.|++++|.++.++...+ +++|+.|++++|.++.++. ..+..+++|++|++++| .++
T Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~ 163 (353)
T 2z80_A 84 TSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 163 (353)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred CCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc
Confidence 9999999998899999999999999999999887654 8899999999999999887 67889999999999999 588
Q ss_pred eeccccccCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767 164 TIYSEAFYGIDKIDTLKLNGNKLASLKPRTW 194 (195)
Q Consensus 164 ~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~ 194 (195)
++.+..+..+++|+.|++++|+++++.+..|
T Consensus 164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 194 (353)
T 2z80_A 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194 (353)
T ss_dssp EECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred ccCHHHccCCCCCCEEECCCCCcCccCHHHH
Confidence 8888889999999999999999998877665
No 13
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.93 E-value=4.2e-25 Score=160.83 Aligned_cols=162 Identities=27% Similarity=0.486 Sum_probs=148.4
Q ss_pred CCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccccc
Q psy14767 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF 100 (195)
Q Consensus 21 ~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 100 (195)
......|.|.+ ..++|++++++.+|.+++++++.|++++|.++.+.+..|. ++++|+.|++++|.++.+++..|
T Consensus 11 ~~~~~~~~Cs~----~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~N~l~~i~~~~~ 84 (229)
T 3e6j_A 11 AACPSQCSCSG----TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFD--SLINLKELYLGSNQLGALPVGVF 84 (229)
T ss_dssp CCCCTTCEEET----TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCCCCEEeC----CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhh--CccCCcEEECCCCCCCCcChhhc
Confidence 34556899994 6799999999999999999999999999999999888887 78999999999999999998889
Q ss_pred CCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcE
Q psy14767 101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDT 178 (195)
Q Consensus 101 ~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~ 178 (195)
..+++|+.|++++|.++.++...+ +++|+.|++++|+++.++. .+..+++|++|++++|+++++++..+..+++|+.
T Consensus 85 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 85 DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163 (229)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCT-TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCc-ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 999999999999999999988776 8999999999999998865 5678899999999999999998888999999999
Q ss_pred EEcCCCCCCCC
Q psy14767 179 LKLNGNKLASL 189 (195)
Q Consensus 179 l~l~~n~l~~~ 189 (195)
|++++|++...
T Consensus 164 L~l~~N~~~c~ 174 (229)
T 3e6j_A 164 AYLFGNPWDCE 174 (229)
T ss_dssp EECTTSCBCTT
T ss_pred EEeeCCCccCC
Confidence 99999998754
No 14
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.93 E-value=1.1e-25 Score=164.74 Aligned_cols=166 Identities=19% Similarity=0.379 Sum_probs=126.7
Q ss_pred CCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCC-cceecccc
Q psy14767 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRA 99 (195)
Q Consensus 21 ~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~-i~~~~~~~ 99 (195)
+.||..|.|... ....++|.+ ++.+|. ++.+++.|++++|+++.+++..|. ++++|+.|++++|. ++.+++.+
T Consensus 2 ~~cp~~C~C~~~-~~~~v~c~~--l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~ 75 (239)
T 2xwt_C 2 GCSSPPCECHQE-EDFRVTCKD--IQRIPS-LPPSTQTLKLIETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHS 75 (239)
T ss_dssp -CCSSSCSEEEC-STTEEEECS--CSSCCC-CCTTCCEEEEESCCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTT
T ss_pred CCCCCCCeeCCC-CcceeEccC--ccccCC-CCCcccEEEEeCCcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhH
Confidence 579999999841 236788977 788888 778899999999999988887776 77889999999996 88888888
Q ss_pred cCCCCCccEEEcCC-CCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCC---EEecCCC-cceeeccccccC
Q psy14767 100 FRGVTNMDELDLSD-NLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIR---YIDMSNC-QIHTIYSEAFYG 172 (195)
Q Consensus 100 ~~~l~~l~~l~l~~-n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~ 172 (195)
|.++++|+.|++++ |.++.++...+ +++|+.|++++|.++.++. +..+++|+ +|++++| .++++++..+..
T Consensus 76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~ 153 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153 (239)
T ss_dssp EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccc
Confidence 88888999999988 88888877665 7778888888877776653 55556665 6777776 666666666666
Q ss_pred CCCCc-EEEcCCCCCCCCCCCCC
Q psy14767 173 IDKID-TLKLNGNKLASLKPRTW 194 (195)
Q Consensus 173 l~~l~-~l~l~~n~l~~~~~~~~ 194 (195)
+++|+ .|++++|+++.+++..|
T Consensus 154 l~~L~~~L~l~~n~l~~i~~~~~ 176 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFTSVQGYAF 176 (239)
T ss_dssp TBSSEEEEECCSCCCCEECTTTT
T ss_pred hhcceeEEEcCCCCCcccCHhhc
Confidence 66666 67776666666665544
No 15
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.8e-24 Score=162.72 Aligned_cols=164 Identities=21% Similarity=0.334 Sum_probs=117.0
Q ss_pred CCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCC
Q psy14767 26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN 105 (195)
Q Consensus 26 ~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~ 105 (195)
.|.|..-.....++|.+++++.+|.++++.++.|++++|.++.+.+..+. ++++|+.|++++|.++.+++. ..+++
T Consensus 3 ~C~~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~--~~l~~ 78 (290)
T 1p9a_G 3 ICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQVD--GTLPV 78 (290)
T ss_dssp SSEEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEECC--SCCTT
T ss_pred cccccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhh--cCCCCCEEECCCCccCcccCC--CCCCc
Confidence 57776555578999999999999999999999999999999999888887 778888888888888877653 45666
Q ss_pred ccEEEcCCCCCCcccCccc-ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCC
Q psy14767 106 MDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN 184 (195)
Q Consensus 106 l~~l~l~~n~l~~~~~~~~-~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n 184 (195)
|+.|++++|.++.++.... +++|+.|++++|+++.+++..|..+++|++|++++|+++++++..+..+++|+.|++++|
T Consensus 79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 6666666666666655433 556666666666666665555556666666666666666555555555555666666666
Q ss_pred CCCCCCCCC
Q psy14767 185 KLASLKPRT 193 (195)
Q Consensus 185 ~l~~~~~~~ 193 (195)
+++++++..
T Consensus 159 ~l~~l~~~~ 167 (290)
T 1p9a_G 159 NLTELPAGL 167 (290)
T ss_dssp CCSCCCTTT
T ss_pred cCCccCHHH
Confidence 555555544
No 16
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=5.2e-24 Score=159.00 Aligned_cols=164 Identities=21% Similarity=0.431 Sum_probs=145.6
Q ss_pred CCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCC
Q psy14767 26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN 105 (195)
Q Consensus 26 ~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~ 105 (195)
.|.|... ...++|.+..+..+|..++++++.|++++|.++.+++..+. .+++|++|++++|.++.+++.+|..+++
T Consensus 2 ~C~~~~~--~~~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 77 (276)
T 2z62_A 2 PCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSH 77 (276)
T ss_dssp CSEEEET--TTEEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTT--TCTTCSEEECTTCCCCEECTTTTTTCTT
T ss_pred CceeccC--CceEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhc--cccCCcEEECCCCcCCccCHHHccCCcC
Confidence 5777743 36799999999999999999999999999999999887777 7899999999999999999889999999
Q ss_pred ccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeec-cccccCCCCCcEEEcC
Q psy14767 106 MDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY-SEAFYGIDKIDTLKLN 182 (195)
Q Consensus 106 l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~l~~l~l~ 182 (195)
|+.|++++|.++.++...+ +++|+.|++++|.++.+++..+..+++|++|++++|.++++. +..+..+++|+.|+++
T Consensus 78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC
Confidence 9999999999998886655 889999999999999888877888999999999999998854 6778889999999999
Q ss_pred CCCCCCCCCCC
Q psy14767 183 GNKLASLKPRT 193 (195)
Q Consensus 183 ~n~l~~~~~~~ 193 (195)
+|+++++++..
T Consensus 158 ~N~l~~~~~~~ 168 (276)
T 2z62_A 158 SNKIQSIYCTD 168 (276)
T ss_dssp SSCCCEECGGG
T ss_pred CCCCCcCCHHH
Confidence 99998877643
No 17
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=1.6e-24 Score=164.02 Aligned_cols=166 Identities=22% Similarity=0.470 Sum_probs=122.0
Q ss_pred CCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceec--ccc-
Q psy14767 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD--DRA- 99 (195)
Q Consensus 23 c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~--~~~- 99 (195)
||..|.|.+ +.++|++.+++.+|.+++++++.|++++|.++.+++..|. .+++|+.|++++|.++.+. +..
T Consensus 1 CP~~C~C~~----~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~ 74 (306)
T 2z66_A 1 CPSRCSCSG----TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFD--KLTQLTKLSLSSNGLSFKGCCSQSD 74 (306)
T ss_dssp CCTTCEEET----TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCEEEEEEHHH
T ss_pred CcCCCeeCC----CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhh--ccccCCEEECCCCccCcccCccccc
Confidence 899999984 6899999999999999999999999999999999888776 6788888888888776542 222
Q ss_pred ----------------------cCCCCCccEEEcCCCCCCcccC-ccc--ccccCeeecCCCcccccCCCcCCCCCCCCE
Q psy14767 100 ----------------------FRGVTNMDELDLSDNLLSTVPS-LIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRY 154 (195)
Q Consensus 100 ----------------------~~~l~~l~~l~l~~n~l~~~~~-~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~ 154 (195)
+..+++|+.|++++|.++.++. ..+ +++|+.|++++|.++.+.+..+..+++|++
T Consensus 75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 3344455555555555554443 222 566677777777766666666667777777
Q ss_pred EecCCCccee-eccccccCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767 155 IDMSNCQIHT-IYSEAFYGIDKIDTLKLNGNKLASLKPRTW 194 (195)
Q Consensus 155 L~l~~n~l~~-~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~ 194 (195)
|++++|.+++ ..+..+..+++|+.|++++|+++++++..|
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 195 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHh
Confidence 7777777765 445667777888888888888887766554
No 18
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=1.5e-23 Score=160.21 Aligned_cols=167 Identities=23% Similarity=0.472 Sum_probs=146.9
Q ss_pred cCCCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccc
Q psy14767 19 TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR 98 (195)
Q Consensus 19 ~~~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~ 98 (195)
....||..|.|. .+.++|++++++.+|..+++.++.|++++|.++.+++..+. .+++|++|++++|.++.+.+.
T Consensus 21 ~~~~cp~~c~c~----l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~ 94 (330)
T 1xku_A 21 MGPVCPFRCQCH----LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK--NLKNLHTLILINNKISKISPG 94 (330)
T ss_dssp -CCCCCTTCEEE----TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTT
T ss_pred ccCCCCCCCcCC----CeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhc--cCCCCCEEECCCCcCCeeCHH
Confidence 346799999998 47899999999999999999999999999999999988887 789999999999999999888
Q ss_pred ccCCCCCccEEEcCCCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCccee--eccccccCCCCC
Q psy14767 99 AFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT--IYSEAFYGIDKI 176 (195)
Q Consensus 99 ~~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~l 176 (195)
+|..+++|+.|++++|.++.++...+ ++|+.|++++|.++.+++..+..+++|+.|++++|.++. +.+..+..+++|
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 173 (330)
T 1xku_A 95 AFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173 (330)
T ss_dssp TTTTCTTCCEEECCSSCCSBCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred HhcCCCCCCEEECCCCcCCccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence 99999999999999999998877664 789999999999998887778888999999999998864 556678888888
Q ss_pred cEEEcCCCCCCCCCCC
Q psy14767 177 DTLKLNGNKLASLKPR 192 (195)
Q Consensus 177 ~~l~l~~n~l~~~~~~ 192 (195)
+.|++++|.+++++..
T Consensus 174 ~~L~l~~n~l~~l~~~ 189 (330)
T 1xku_A 174 SYIRIADTNITTIPQG 189 (330)
T ss_dssp CEEECCSSCCCSCCSS
T ss_pred CEEECCCCccccCCcc
Confidence 8888888888877654
No 19
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.91 E-value=9.9e-24 Score=149.77 Aligned_cols=137 Identities=20% Similarity=0.417 Sum_probs=125.7
Q ss_pred CCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccccc
Q psy14767 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF 100 (195)
Q Consensus 21 ~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 100 (195)
.+||..|.|. ...++|++++++.+|.+++++++.|++++|.++.++ ..+. ++++|+.|++++|.++.+++.+|
T Consensus 2 ~~CP~~C~C~----~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip-~~~~--~l~~L~~L~Ls~N~i~~i~~~~f 74 (193)
T 2wfh_A 2 SRCPTECTCL----DTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVP-KELS--NYKHLTLIDLSNNRISTLSNQSF 74 (193)
T ss_dssp --CCTTCEEE----TTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCC-GGGG--GCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCCCCEeC----CCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhH-HHhh--cccCCCEEECCCCcCCEeCHhHc
Confidence 5799999998 478999999999999999999999999999999888 4565 78999999999999999999999
Q ss_pred CCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCccee
Q psy14767 101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT 164 (195)
Q Consensus 101 ~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 164 (195)
.++++|+.|++++|+++.++...+ +++|+.|++++|.++.+++..|..+++|+.|++++|.+..
T Consensus 75 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 999999999999999999988776 8999999999999999998889999999999999999874
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=8.8e-24 Score=167.80 Aligned_cols=168 Identities=20% Similarity=0.346 Sum_probs=144.5
Q ss_pred CCCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcc-eeccc
Q psy14767 20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE-FVDDR 98 (195)
Q Consensus 20 ~~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~-~~~~~ 98 (195)
|.+||..|.|. ...++|.+.+++.+|. ++++++.|++++|.++.+.+..+. .+++|++|++++|.+. .+++.
T Consensus 1 a~p~~~~c~~~----~~~~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~n~~~~~i~~~ 73 (455)
T 3v47_A 1 ADPGTSECSVI----GYNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFS--RLQDLQFLKVEQQTPGLVIRNN 73 (455)
T ss_dssp ------CCEEE----TTEEECCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTS--SCTTCCEEECCCCSTTCEECTT
T ss_pred CCCccceeEEE----ccccCcCCCCcccCCC-CCCccCEEEecCCccCcCChhHhc--cCccccEEECcCCcccceECcc
Confidence 46799999998 5789999999999999 889999999999999999888887 7899999999999987 67788
Q ss_pred ccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccc--cCCCcCCCCCCCCEEecCCCcceeecccc-ccCC
Q psy14767 99 AFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQ--ISSYSFQSTPGIRYIDMSNCQIHTIYSEA-FYGI 173 (195)
Q Consensus 99 ~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l 173 (195)
+|.++++|++|++++|.++.++...+ +++|++|++++|.+++ .....+..+++|++|++++|+++++.+.. +..+
T Consensus 74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 153 (455)
T 3v47_A 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153 (455)
T ss_dssp TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC
T ss_pred cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC
Confidence 89999999999999999998766555 8999999999999986 33445888999999999999999986654 8899
Q ss_pred CCCcEEEcCCCCCCCCCCCCC
Q psy14767 174 DKIDTLKLNGNKLASLKPRTW 194 (195)
Q Consensus 174 ~~l~~l~l~~n~l~~~~~~~~ 194 (195)
++|+.|++++|+++++++..+
T Consensus 154 ~~L~~L~L~~n~l~~~~~~~l 174 (455)
T 3v47_A 154 RRFHVLDLTFNKVKSICEEDL 174 (455)
T ss_dssp TTCCEEECTTCCBSCCCTTTS
T ss_pred CcccEEeCCCCcccccChhhh
Confidence 999999999999999887654
No 21
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=1.7e-23 Score=160.05 Aligned_cols=164 Identities=28% Similarity=0.543 Sum_probs=140.7
Q ss_pred CCCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccc
Q psy14767 20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA 99 (195)
Q Consensus 20 ~~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~ 99 (195)
...||..|.|. .+.++|+++.++.+|..+++.++.|++++|.++.+++..+. .+++|++|++++|.++.+.+.+
T Consensus 24 ~~~cp~~c~c~----l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~ 97 (332)
T 2ft3_A 24 SAMCPFGCHCH----LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFK--GLQHLYALVLVNNKISKIHEKA 97 (332)
T ss_dssp -CCCCSSCEEE----TTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECGGG
T ss_pred cCCCCCCCccc----CCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhh--CCCCCcEEECCCCccCccCHhH
Confidence 46799999998 47899999999999999999999999999999999888887 7899999999999999998999
Q ss_pred cCCCCCccEEEcCCCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCccee--eccccccCCCCCc
Q psy14767 100 FRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT--IYSEAFYGIDKID 177 (195)
Q Consensus 100 ~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~l~ 177 (195)
|.++++|+.|++++|.++.+|...+ ++|++|++++|.++.+++..+..+++|+.|++++|.++. +.+..+..+ +|+
T Consensus 98 ~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 98 FSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN 175 (332)
T ss_dssp STTCTTCCEEECCSSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS
T ss_pred hhCcCCCCEEECCCCcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC
Confidence 9999999999999999998887765 789999999999999988888899999999999999864 555556555 555
Q ss_pred EEEcCCCCCCCCCC
Q psy14767 178 TLKLNGNKLASLKP 191 (195)
Q Consensus 178 ~l~l~~n~l~~~~~ 191 (195)
.|++++|++++++.
T Consensus 176 ~L~l~~n~l~~l~~ 189 (332)
T 2ft3_A 176 YLRISEAKLTGIPK 189 (332)
T ss_dssp CCBCCSSBCSSCCS
T ss_pred EEECcCCCCCccCc
Confidence 55555555555443
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=3.5e-24 Score=175.67 Aligned_cols=167 Identities=20% Similarity=0.308 Sum_probs=132.8
Q ss_pred CCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccccc
Q psy14767 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF 100 (195)
Q Consensus 21 ~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 100 (195)
..|+..|.|... ...++|.+.+++.+|..++..++.|++++|.++.+++..|. ++++|++|++++|.++.+.+.+|
T Consensus 2 ~~~~~~C~~~~~--~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~ 77 (606)
T 3t6q_A 2 TSSDQKCIEKEV--NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFS--RLINLTFLDLTRCQIYWIHEDTF 77 (606)
T ss_dssp ----CCCEEEET--TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTST--TCTTCSEEECTTCCCCEECTTTT
T ss_pred ccccCceecccC--CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhc--cCccceEEECCCCccceeChhhc
Confidence 468889999853 46899999999999999999999999999999999888887 78999999999999999988899
Q ss_pred CCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcE
Q psy14767 101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDT 178 (195)
Q Consensus 101 ~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~ 178 (195)
.++++|++|++++|.++.+++..+ +++|++|++++|.++.+.+..+..+++|++|++++|+++++....+..+++|+.
T Consensus 78 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 157 (606)
T 3t6q_A 78 QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157 (606)
T ss_dssp TTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCE
T ss_pred cCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCE
Confidence 999999999999999987765554 778888888888887776666777777777777777777654344444666666
Q ss_pred EEcCCCCCCCCCC
Q psy14767 179 LKLNGNKLASLKP 191 (195)
Q Consensus 179 l~l~~n~l~~~~~ 191 (195)
|++++|+++++++
T Consensus 158 L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 158 LDFQNNAIHYLSK 170 (606)
T ss_dssp EECCSSCCCEECH
T ss_pred EEcccCcccccCh
Confidence 6666666665543
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.6e-23 Score=171.76 Aligned_cols=165 Identities=19% Similarity=0.382 Sum_probs=149.7
Q ss_pred CCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCC
Q psy14767 26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN 105 (195)
Q Consensus 26 ~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~ 105 (195)
.|.|.. ....++|++.+++.+|..++++++.|++++|.++.+++..|. ++++|++|++++|.++.+.+.+|.++++
T Consensus 6 ~c~~~~--~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~i~~~~~~~l~~ 81 (606)
T 3vq2_A 6 PCIEVV--PNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFS--NFSELQWLDLSRCEIETIEDKAWHGLHH 81 (606)
T ss_dssp CCEEEE--TTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CceecC--CCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhcc--CCccCcEEeCCCCcccccCHHHhhchhh
Confidence 477753 246899999999999999999999999999999999998887 8899999999999999999999999999
Q ss_pred ccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeec-cccccCCCCCcEEEcC
Q psy14767 106 MDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY-SEAFYGIDKIDTLKLN 182 (195)
Q Consensus 106 l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~l~~l~l~ 182 (195)
|++|++++|.++.+++..+ +++|++|++++|.++.+++..+..+++|++|++++|.++++. +..++.+++|+.|+++
T Consensus 82 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls 161 (606)
T 3vq2_A 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161 (606)
T ss_dssp CCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred cCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc
Confidence 9999999999998866555 999999999999999999888999999999999999998743 7789999999999999
Q ss_pred CCCCCCCCCCCC
Q psy14767 183 GNKLASLKPRTW 194 (195)
Q Consensus 183 ~n~l~~~~~~~~ 194 (195)
+|.++++++..|
T Consensus 162 ~n~l~~~~~~~~ 173 (606)
T 3vq2_A 162 YNYIQTITVNDL 173 (606)
T ss_dssp SSCCCEECTTTT
T ss_pred CCcceecChhhh
Confidence 999999887755
No 24
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.91 E-value=2.2e-23 Score=147.88 Aligned_cols=138 Identities=26% Similarity=0.517 Sum_probs=126.7
Q ss_pred CCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchh-hhhccCCCCccEEEeecCCcceeccccc
Q psy14767 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKE-IFLQMGITNIQKLYLRKCKLEFVDDRAF 100 (195)
Q Consensus 22 ~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~-~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 100 (195)
+||..|.|.+ +.++|++++++.+|..++.+++.|++++|.++.+++. .+. .+++|+.|++++|.++.+.+.+|
T Consensus 1 ~CP~~C~C~~----~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~ 74 (192)
T 1w8a_A 1 DCPAMCHCEG----TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFG--RLPHLVKLELKRNQLTGIEPNAF 74 (192)
T ss_dssp CCCTTSEEET----TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGG--GCTTCCEEECCSSCCCCBCTTTT
T ss_pred CcCCCCEECC----CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccc--cCCCCCEEECCCCCCCCcCHhHc
Confidence 5999999994 7899999999999999999999999999999998875 465 68899999999999999999999
Q ss_pred CCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceee
Q psy14767 101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165 (195)
Q Consensus 101 ~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 165 (195)
.++++|+.|++++|+++.++...+ +++|+.|++++|.++++.+..+..+++|++|++++|.+++.
T Consensus 75 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 999999999999999998888766 89999999999999999888899999999999999998754
No 25
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.90 E-value=2.5e-23 Score=160.33 Aligned_cols=166 Identities=20% Similarity=0.381 Sum_probs=121.5
Q ss_pred CCCCC-CeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCc-ceecccc
Q psy14767 22 SCPLG-CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFVDDRA 99 (195)
Q Consensus 22 ~c~~~-c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i-~~~~~~~ 99 (195)
+||.+ |.|. .+.++|++++++++|.+++++++.|++++|+|+.+++..|. ++++|++|++++|.+ +.+++++
T Consensus 1 gCp~~~C~C~----~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~Ls~N~i~~~i~~~~ 74 (350)
T 4ay9_X 1 GCHHRICHCS----NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADV 74 (350)
T ss_dssp -CCCSSSEEE----TTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSST--TCTTCCEEEEECCTTCCEECTTS
T ss_pred CCCCCccEee----CCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHc--CCCCCCEEECcCCCCCCccChhH
Confidence 59875 9998 47899999999999999999999999999999999999988 889999999999997 4566778
Q ss_pred cCCCCCccE-EEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCC-------------------------
Q psy14767 100 FRGVTNMDE-LDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPG------------------------- 151 (195)
Q Consensus 100 ~~~l~~l~~-l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~------------------------- 151 (195)
|.+++++.. +.+..|+++.++...+ +++|+.+++++|+++.+++..+....+
T Consensus 75 f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~ 154 (350)
T 4ay9_X 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 154 (350)
T ss_dssp BCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS
T ss_pred hhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcch
Confidence 888887765 5566788888877766 788888888888777665543333333
Q ss_pred -CCEEecCCCcceeeccccccCCCCCcEEEcC-CCCCCCCCCCCC
Q psy14767 152 -IRYIDMSNCQIHTIYSEAFYGIDKIDTLKLN-GNKLASLKPRTW 194 (195)
Q Consensus 152 -L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~-~n~l~~~~~~~~ 194 (195)
++.|++++|+++.+++.++.. .+++.+++. +|.++.+++++|
T Consensus 155 ~l~~L~L~~N~i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f 198 (350)
T 4ay9_X 155 ESVILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVF 198 (350)
T ss_dssp SCEEEECCSSCCCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTT
T ss_pred hhhhhccccccccCCChhhccc-cchhHHhhccCCcccCCCHHHh
Confidence 444555555555554443322 345555554 345555555544
No 26
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.90 E-value=6.8e-23 Score=143.41 Aligned_cols=139 Identities=24% Similarity=0.460 Sum_probs=126.4
Q ss_pred CCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCC
Q psy14767 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102 (195)
Q Consensus 23 c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~ 102 (195)
||..|.|.+ +.++|.+++++.+|..++++++.|++++|.++.+++..+. .+++|++|++++|.++.+++..|..
T Consensus 1 Cp~~C~C~~----~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (177)
T 2o6r_A 1 CPSRCSCSG----TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFD--KLTQLTKLSLSQNQIQSLPDGVFDK 74 (177)
T ss_dssp CCTTCEEET----TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CcCCCEeCC----CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhc--CcccccEEECCCCcceEeChhHccC
Confidence 899999984 7899999999999999999999999999999999988877 7899999999999999998888899
Q ss_pred CCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeecc
Q psy14767 103 VTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167 (195)
Q Consensus 103 l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 167 (195)
+++|+.|++++|.++.++...+ +++|+.|++++|.++.+++..+..+++|++|++++|.+.+..+
T Consensus 75 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999999999999998888765 8899999999999999988778888999999999999886543
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=5.4e-23 Score=167.32 Aligned_cols=165 Identities=21% Similarity=0.423 Sum_probs=148.0
Q ss_pred CCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCC
Q psy14767 25 LGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104 (195)
Q Consensus 25 ~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~ 104 (195)
+.|.|... ...++|.+.+++++|..++++++.|++++|.++.+++..|. ++++|+.|++++|.++.+++.+|.+++
T Consensus 1 ~~c~~~~~--~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~~~~~l~ 76 (570)
T 2z63_A 1 EPCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLS 76 (570)
T ss_dssp CCSEEEET--TTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTT--TCSSCCEEECTTCCCCEECTTTTTTCT
T ss_pred CCccccCC--CcEEEeCCCCccccCCCccccccEEEccCCccCccChhHhh--CCCCceEEECCCCcCCccCcccccCch
Confidence 36888743 47899999999999999999999999999999999988887 889999999999999999999999999
Q ss_pred CccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeec-cccccCCCCCcEEEc
Q psy14767 105 NMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY-SEAFYGIDKIDTLKL 181 (195)
Q Consensus 105 ~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~l~~l~l 181 (195)
+|+.|++++|.++.++...+ +++|++|++++|.++.+++..+..+++|++|++++|.++++. +..++.+++|+.|++
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l 156 (570)
T 2z63_A 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (570)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred hCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeC
Confidence 99999999999998887666 899999999999999988877899999999999999998753 677899999999999
Q ss_pred CCCCCCCCCCCC
Q psy14767 182 NGNKLASLKPRT 193 (195)
Q Consensus 182 ~~n~l~~~~~~~ 193 (195)
++|+++++++..
T Consensus 157 ~~n~l~~~~~~~ 168 (570)
T 2z63_A 157 SSNKIQSIYCTD 168 (570)
T ss_dssp TTSCCCEECGGG
T ss_pred cCCccceecHHH
Confidence 999998876643
No 28
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=3.1e-22 Score=148.97 Aligned_cols=158 Identities=21% Similarity=0.409 Sum_probs=136.1
Q ss_pred ceEEEecCCCceeeCCC-CC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEc
Q psy14767 35 KRTVECIDRNFYTIPEG-ID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~~-~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l 111 (195)
.+.++.+++.+..+|.. +. ++++.|++++|.++.+++..|. .+++|++|++++|.++.+++..|..+++|+.|++
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK--ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTS--SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhc--CCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 57788899988888763 32 6899999999999988888876 6789999999999999888888888999999999
Q ss_pred CCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCC
Q psy14767 112 SDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189 (195)
Q Consensus 112 ~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~ 189 (195)
++|.++.++...+ +++|+.|++++|.++.+++..+..+++|+.|++++|+++++++..+..+++|+.|++++|+++++
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 9999998887765 88899999999999888887788889999999999999988888888888999999999999888
Q ss_pred CCCCC
Q psy14767 190 KPRTW 194 (195)
Q Consensus 190 ~~~~~ 194 (195)
++..|
T Consensus 197 ~~~~~ 201 (270)
T 2o6q_A 197 PEGAF 201 (270)
T ss_dssp CTTTT
T ss_pred CHHHh
Confidence 87655
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=6e-23 Score=167.21 Aligned_cols=164 Identities=16% Similarity=0.262 Sum_probs=137.4
Q ss_pred CCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccccc
Q psy14767 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF 100 (195)
Q Consensus 21 ~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 100 (195)
..++..|.|.. .+.++|++++++.+|..++++++.|++++|.++.+++..+. ++++|++|++++|.++.+.+++|
T Consensus 22 ~~~~~~~~~~~---~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~ 96 (562)
T 3a79_B 22 VGSMTPFSNEL---ESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDIS--FLSELRVLRLSHNRIRSLDFHVF 96 (562)
T ss_dssp --------------CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTT--TCTTCCEEECCSCCCCEECTTTT
T ss_pred hccccccccCC---CcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhc--cCCCccEEECCCCCCCcCCHHHh
Confidence 44555566662 47899999999999999999999999999999999988887 88999999999999999999999
Q ss_pred CCCCCccEEEcCCCCCCcccCcccccccCeeecCCCcccccC-CCcCCCCCCCCEEecCCCcceeeccccccCCCCC--c
Q psy14767 101 RGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI--D 177 (195)
Q Consensus 101 ~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l--~ 177 (195)
.++++|++|++++|.++.+|.. .+++|++|++++|.++.++ +..+..+++|++|++++|++++.. +..++++ +
T Consensus 97 ~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~ 172 (562)
T 3a79_B 97 LFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLS 172 (562)
T ss_dssp TTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEE
T ss_pred CCCCCCCEEECCCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceee
Confidence 9999999999999999999887 7889999999999999876 468889999999999999998743 4444555 9
Q ss_pred EEEcCCCCC--CCCCCCC
Q psy14767 178 TLKLNGNKL--ASLKPRT 193 (195)
Q Consensus 178 ~l~l~~n~l--~~~~~~~ 193 (195)
.|++++|++ ++..+..
T Consensus 173 ~L~L~~n~l~~~~~~~~~ 190 (562)
T 3a79_B 173 CILLDLVSYHIKGGETES 190 (562)
T ss_dssp EEEEEESSCCCCSSSCCE
T ss_pred EEEeecccccccccCccc
Confidence 999999998 7766654
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=5e-23 Score=170.94 Aligned_cols=161 Identities=18% Similarity=0.339 Sum_probs=140.4
Q ss_pred CCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCC
Q psy14767 26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN 105 (195)
Q Consensus 26 ~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~ 105 (195)
.|.|. ...++|++++++++|..++++++.|++++|.++.+++..|. ++++|++|++++|.++.+.+.+|.++++
T Consensus 1 ~C~~~----~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 74 (680)
T 1ziw_A 1 KCTVS----HEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFT--RYSQLTSLDVGFNTISKLEPELCQKLPM 74 (680)
T ss_dssp ---CB----SSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGG--GGTTCSEEECCSSCCCCCCTTHHHHCTT
T ss_pred CceeE----CCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHh--CCCcCcEEECCCCccCccCHHHHhcccC
Confidence 36776 36899999999999999999999999999999999998887 7889999999999999998888999999
Q ss_pred ccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCC
Q psy14767 106 MDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNG 183 (195)
Q Consensus 106 l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~ 183 (195)
|+.|++++|.++.++...+ +++|++|++++|.++.+++..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 75 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS
T ss_pred cCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC
Confidence 9999999999998888655 88999999999999888888888889999999999998888777788888888888888
Q ss_pred CCCCCCCCC
Q psy14767 184 NKLASLKPR 192 (195)
Q Consensus 184 n~l~~~~~~ 192 (195)
|.++++++.
T Consensus 155 n~l~~~~~~ 163 (680)
T 1ziw_A 155 NKIQALKSE 163 (680)
T ss_dssp SCCCCBCHH
T ss_pred CcccccCHH
Confidence 888777653
No 31
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=8.6e-22 Score=145.13 Aligned_cols=154 Identities=22% Similarity=0.372 Sum_probs=141.6
Q ss_pred CceEEEecCCCceeeCCCC-C--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEE
Q psy14767 34 GKRTVECIDRNFYTIPEGI-D--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (195)
Q Consensus 34 ~~~~~~c~~~~l~~~p~~~-~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~ 110 (195)
..+.++.+++.+..++... . ++++.|++++|.++.+++..+. .+++|+.|++++|.++.+++..|..+++|+.|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD--DLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc--cCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 3578999999999887643 3 6899999999999999998887 789999999999999999998999999999999
Q ss_pred cCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCC
Q psy14767 111 LSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188 (195)
Q Consensus 111 l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~ 188 (195)
+++|.++.++...+ +++|+.|++++|.++.+++..+..+++|++|++++|+++++++..+..+++|+.|++++|+++.
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 99999999988776 8999999999999999998889999999999999999999988889999999999999999976
Q ss_pred C
Q psy14767 189 L 189 (195)
Q Consensus 189 ~ 189 (195)
.
T Consensus 194 ~ 194 (251)
T 3m19_A 194 S 194 (251)
T ss_dssp T
T ss_pred C
Confidence 5
No 32
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=3e-21 Score=144.66 Aligned_cols=157 Identities=20% Similarity=0.339 Sum_probs=95.9
Q ss_pred ceEEEecCCCceeeCCCCC---CceeEEEeecCCccccchhhhhccCCCCccEEEeecCC-cceecccccCCCCCccEEE
Q psy14767 35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRAFRGVTNMDELD 110 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~---~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~-i~~~~~~~~~~l~~l~~l~ 110 (195)
.+.++.+++.++.+|.... ++++.|++++|.++.+.+..+. ++++|++|++++|. ++.+.+..|..+++|+.|+
T Consensus 34 l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT--GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred ceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcC--CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 4567777777777664322 4677777777777766666555 56667777777765 6666566666666666666
Q ss_pred cCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCC
Q psy14767 111 LSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188 (195)
Q Consensus 111 l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~ 188 (195)
+++|.++.++...+ +++|+.|++++|.++.+++..+..+++|++|++++|+++++++..+..+++|+.|++++|++++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 66666665544433 5566666666666665555555555566666666666555555555555555555555555555
Q ss_pred CCCCC
Q psy14767 189 LKPRT 193 (195)
Q Consensus 189 ~~~~~ 193 (195)
+++..
T Consensus 192 ~~~~~ 196 (285)
T 1ozn_A 192 VHPHA 196 (285)
T ss_dssp ECTTT
T ss_pred cCHhH
Confidence 54433
No 33
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=6.6e-22 Score=152.49 Aligned_cols=185 Identities=16% Similarity=0.287 Sum_probs=140.0
Q ss_pred hhHHHHHHHHHHh---hhccCCCCCCCCeecccC------------CceEEEecCCCceeeCCC-CC--CceeEEEeecC
Q psy14767 3 HKFILSVFLLTLL---ASVTQASCPLGCSCKWKA------------GKRTVECIDRNFYTIPEG-ID--LDTQVLDLSSN 64 (195)
Q Consensus 3 ~~~~~~~~~~~~~---~~~~~~~c~~~c~c~~~~------------~~~~~~c~~~~l~~~p~~-~~--~~l~~L~l~~n 64 (195)
..+++.+++.... ...+...||..|.|+... ..+.++.+++.++.+|.. +. ++++.|++++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n 86 (353)
T 2z80_A 7 MVWVLGVIISLSKEESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86 (353)
T ss_dssp --------------------CCEECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred HHhhhhheeeccCccCCCccCCCCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC
Confidence 3445555543322 233456789888876421 346799999999999874 33 68999999999
Q ss_pred CccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccC-ccc--ccccCeeecCCC-cccc
Q psy14767 65 NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS-LIY--IPYLKSINLAHN-PIHQ 140 (195)
Q Consensus 65 ~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~-~~~--~~~l~~l~l~~n-~~~~ 140 (195)
.++.+.+..+. ++++|++|++++|.++.+++..|.++++|+.|++++|.++.++. ..+ +++|+.|++++| .++.
T Consensus 87 ~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 87 GINTIEEDSFS--SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp CCCEECTTTTT--TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred ccCccCHhhcC--CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc
Confidence 99999888887 78999999999999999988789999999999999999998887 444 889999999998 5888
Q ss_pred cCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCC
Q psy14767 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189 (195)
Q Consensus 141 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~ 189 (195)
+++..+..+++|++|++++|+++++.+..+..+++|+.|++++|+++.+
T Consensus 165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 213 (353)
T 2z80_A 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213 (353)
T ss_dssp ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTH
T ss_pred cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccc
Confidence 8777888889999999999999888777777777777776666665543
No 34
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=9.9e-21 Score=141.03 Aligned_cols=152 Identities=19% Similarity=0.315 Sum_probs=82.0
Q ss_pred eEEEecCCCceeeCC-CCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCC
Q psy14767 36 RTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114 (195)
Q Consensus 36 ~~~~c~~~~l~~~p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n 114 (195)
+.++.+++.+..++. .-.++++.|++++|.++.+++..+. .+++|++|++++|.++.+++..|..+++|+.|++++|
T Consensus 66 ~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 66 RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFD--KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143 (272)
T ss_dssp CEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhc--CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC
Confidence 445555555544431 1114555555555555555555444 4455555555555555555555555555555555555
Q ss_pred CCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCC
Q psy14767 115 LLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189 (195)
Q Consensus 115 ~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~ 189 (195)
.++.++...+ +++|+.|++++|+++.+++..+..+++|++|++++|+++++++..+..+++|+.|++++|++.+.
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence 5555554433 55555555555555555554455555555555555555555555555555555555555555443
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=1.5e-21 Score=158.26 Aligned_cols=155 Identities=25% Similarity=0.448 Sum_probs=138.7
Q ss_pred EEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCC
Q psy14767 38 VECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117 (195)
Q Consensus 38 ~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~ 117 (195)
++|++++++.+|.++++.++.|++++|.++.+++..+. ++++|++|++++|.++.+++.+|.++++|++|++++|.++
T Consensus 10 c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLR--ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTS--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred EECCCCccccccccCCCCccEEECcCCccCccChhhhh--cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 56788999999999999999999999999999888887 7899999999999999999999999999999999999999
Q ss_pred cccCccc--ccccCeeecCCCcccccC-CCcCCCCCCCCEEecCCCc-ceeeccccccCCCCCcEEEcCCCCCCCCCCCC
Q psy14767 118 TVPSLIY--IPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193 (195)
Q Consensus 118 ~~~~~~~--~~~l~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~ 193 (195)
.++...+ +++|++|++++|.++.++ +..+..+++|++|++++|. ++.+++..+..+++|+.|++++|.+++..+..
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 8887644 899999999999998754 3578889999999999998 67777778999999999999999999877665
Q ss_pred C
Q psy14767 194 W 194 (195)
Q Consensus 194 ~ 194 (195)
|
T Consensus 168 l 168 (549)
T 2z81_A 168 L 168 (549)
T ss_dssp T
T ss_pred h
Confidence 4
No 36
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=1.2e-20 Score=140.65 Aligned_cols=156 Identities=21% Similarity=0.360 Sum_probs=139.9
Q ss_pred ceEEEecCCCceeeCC-CCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCC
Q psy14767 35 KRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~ 113 (195)
.+.+++.++.+..++. .-.++++.|++++|.++.++ .+. .+++|++|++++|.++.+++..|..+++|+.|++++
T Consensus 43 L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 43 IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALK--ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred eeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhc--CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 5778899998887764 22379999999999999864 344 789999999999999999988899999999999999
Q ss_pred CCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767 114 NLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191 (195)
Q Consensus 114 n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~ 191 (195)
|.++.++...+ +++|+.|++++|.++.+++..+..+++|+.|++++|+++++++..+..+++|+.|++++|+++++++
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 99999888765 8999999999999999998888999999999999999999988889999999999999999999998
Q ss_pred CCC
Q psy14767 192 RTW 194 (195)
Q Consensus 192 ~~~ 194 (195)
..|
T Consensus 199 ~~~ 201 (272)
T 3rfs_A 199 GVF 201 (272)
T ss_dssp TTT
T ss_pred HHH
Confidence 765
No 37
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=1.5e-20 Score=148.95 Aligned_cols=158 Identities=23% Similarity=0.360 Sum_probs=119.0
Q ss_pred ceEEEecCCCceeeCCCC-C--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccc------------
Q psy14767 35 KRTVECIDRNFYTIPEGI-D--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA------------ 99 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~-~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~------------ 99 (195)
-+.++.+++.+..++... . ++++.|++++|.++.+++..|. .+++|++|++++|.++.+++..
T Consensus 90 L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l 167 (440)
T 3zyj_A 90 LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV--YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167 (440)
T ss_dssp CCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSC--SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhh--ccccCceeeCCCCcccccCHHHhhhCcccCEeCC
Confidence 356788888887776432 2 5788888888888877777665 6677777777777776665544
Q ss_pred -------------cCCCCCccEEEcCCCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeec
Q psy14767 100 -------------FRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166 (195)
Q Consensus 100 -------------~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 166 (195)
|.++++|+.|++++|.++.++....+++|+.|++++|.++.+.+..|..+++|+.|++++|+++++.
T Consensus 168 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 247 (440)
T 3zyj_A 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247 (440)
T ss_dssp CCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC
Confidence 4445555566666666665554333677888888888888887778888889999999999999888
Q ss_pred cccccCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767 167 SEAFYGIDKIDTLKLNGNKLASLKPRTW 194 (195)
Q Consensus 167 ~~~~~~l~~l~~l~l~~n~l~~~~~~~~ 194 (195)
+.++..+++|+.|++++|++++++++.|
T Consensus 248 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 248 RNAFDNLQSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred hhhhcCCCCCCEEECCCCCCCccChhHh
Confidence 8888899999999999999999888765
No 38
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.7e-20 Score=141.03 Aligned_cols=156 Identities=18% Similarity=0.252 Sum_probs=132.8
Q ss_pred CceEEEecCCCceeeCCC-CC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEE
Q psy14767 34 GKRTVECIDRNFYTIPEG-ID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (195)
Q Consensus 34 ~~~~~~c~~~~l~~~p~~-~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~ 110 (195)
..+.++.+++.+..++.. +. +.++.|++++|.++.++.. . .+++|+.|++++|.++.++. .+..+++|+.|+
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~--~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~ 106 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--G--TLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLD 106 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--S--CCTTCCEEECCSSCCSSCCC-CTTTCTTCCEEE
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--C--CCCcCCEEECCCCcCCcCch-hhccCCCCCEEE
Confidence 357889999999887543 33 6899999999999987765 2 67889999999999987754 678889999999
Q ss_pred cCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCC
Q psy14767 111 LSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188 (195)
Q Consensus 111 l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~ 188 (195)
+++|+++.++...+ +++|+.|++++|+++.+++..|..+++|+.|++++|+++++++..+..+++|+.|++++|+++.
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc
Confidence 99999998887766 8899999999999999988888888999999999999999988888889999999999999998
Q ss_pred CCCCCC
Q psy14767 189 LKPRTW 194 (195)
Q Consensus 189 ~~~~~~ 194 (195)
+|+..|
T Consensus 187 ip~~~~ 192 (290)
T 1p9a_G 187 IPKGFF 192 (290)
T ss_dssp CCTTTT
T ss_pred cChhhc
Confidence 887654
No 39
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=2.3e-20 Score=148.30 Aligned_cols=158 Identities=22% Similarity=0.312 Sum_probs=119.7
Q ss_pred ceEEEecCCCceeeCCCCC---CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCC---------
Q psy14767 35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG--------- 102 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~---~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~--------- 102 (195)
-+.++.+++.+..++.... ++++.|++++|.++.+++..|. ++++|++|++++|.++.+++..|..
T Consensus 101 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 178 (452)
T 3zyi_A 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE--YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178 (452)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS--SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhc--ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeC
Confidence 4678888888888775432 5888899999988888888776 6788888888888887776655544
Q ss_pred ----------------CCCccEEEcCCCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeec
Q psy14767 103 ----------------VTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166 (195)
Q Consensus 103 ----------------l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 166 (195)
+++|+.|++++|.++.++....+++|+.|++++|.++.+.+..|..+++|+.|++++|+++++.
T Consensus 179 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 258 (452)
T 3zyi_A 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258 (452)
T ss_dssp CCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC
T ss_pred CCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC
Confidence 4455555555555555544333667777778888877777777888888888888888888888
Q ss_pred cccccCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767 167 SEAFYGIDKIDTLKLNGNKLASLKPRTW 194 (195)
Q Consensus 167 ~~~~~~l~~l~~l~l~~n~l~~~~~~~~ 194 (195)
+.++..+++|+.|++++|++++++++.|
T Consensus 259 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 259 RNAFDGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred HHHhcCCCCCCEEECCCCcCCccChHHh
Confidence 8888888889999999998888887665
No 40
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=6.7e-21 Score=139.31 Aligned_cols=158 Identities=16% Similarity=0.319 Sum_probs=106.3
Q ss_pred CceEEEecCCCceeeCCCCC---CceeEEEeecCC-ccccchhhhhccCCCCccEEEeec-CCcceecccccCCCCCccE
Q psy14767 34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNN-INVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVTNMDE 108 (195)
Q Consensus 34 ~~~~~~c~~~~l~~~p~~~~---~~l~~L~l~~n~-i~~~~~~~~~~~~l~~L~~l~l~~-n~i~~~~~~~~~~l~~l~~ 108 (195)
..+.++.+++.++.+|.... ++++.|++++|. ++.+++..|. ++++|++|++++ |.++.+++.+|.++++|+.
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~--~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY--NLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEE--SCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcC--CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 35678888888888877433 578888888886 8888877776 678888888887 8888887777777777777
Q ss_pred EEcCCCCCCcccC--------------------------ccc--ccccC-eeecCCCcccccCCCcCCCCCCCCEEecCC
Q psy14767 109 LDLSDNLLSTVPS--------------------------LIY--IPYLK-SINLAHNPIHQISSYSFQSTPGIRYIDMSN 159 (195)
Q Consensus 109 l~l~~n~l~~~~~--------------------------~~~--~~~l~-~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 159 (195)
|++++|.++.+|. ..+ +++|+ .+++++|+++.++...+.. ++|+.|++++
T Consensus 110 L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred EeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 7777776665554 222 44455 5555555555555544444 4555666666
Q ss_pred Cc-ceeeccccccCC-CCCcEEEcCCCCCCCCCCCCC
Q psy14767 160 CQ-IHTIYSEAFYGI-DKIDTLKLNGNKLASLKPRTW 194 (195)
Q Consensus 160 n~-l~~~~~~~~~~l-~~l~~l~l~~n~l~~~~~~~~ 194 (195)
|+ ++++++.++..+ ++|+.|++++|+++++++..|
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~ 225 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChhHh
Confidence 63 666655556666 666666666666666665543
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=160.49 Aligned_cols=160 Identities=21% Similarity=0.261 Sum_probs=140.8
Q ss_pred CeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecC-CcceecccccCCCCC
Q psy14767 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDDRAFRGVTN 105 (195)
Q Consensus 27 c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n-~i~~~~~~~~~~l~~ 105 (195)
|.|. ...++|++++++.+|. ++++++.|++++|.++.+.+..|. ++++|+.|++++| .+..+++.+|.++++
T Consensus 2 C~~~----~~~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~--~l~~L~~LdLs~n~~~~~i~~~~f~~L~~ 74 (844)
T 3j0a_A 2 CSFD----GRIAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFP--FLEQLQLLELGSQYTPLTIDKEAFRNLPN 74 (844)
T ss_dssp CBTT----TEEEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCS--SCCSCSEEEECTTCCCCEECTTTTSSCTT
T ss_pred ceEe----ceEEEccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCc--ccccCeEEeCCCCCCccccCHHHhcCCCC
Confidence 6666 5899999999999999 889999999999999999888887 8899999999999 566777889999999
Q ss_pred ccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccC--CCcCCCCCCCCEEecCCCcceeecc-ccccCCCCCcEEE
Q psy14767 106 MDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQIS--SYSFQSTPGIRYIDMSNCQIHTIYS-EAFYGIDKIDTLK 180 (195)
Q Consensus 106 l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~l~~l~ 180 (195)
|+.|++++|.++.+.+..+ +++|++|++++|.++... ...+..+++|++|++++|.+++..+ ..++.+++|+.|+
T Consensus 75 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 75 LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154 (844)
T ss_dssp CCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE
T ss_pred CCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEE
Confidence 9999999999998866555 899999999999998733 3458899999999999999998754 5789999999999
Q ss_pred cCCCCCCCCCCCC
Q psy14767 181 LNGNKLASLKPRT 193 (195)
Q Consensus 181 l~~n~l~~~~~~~ 193 (195)
+++|.++++.++.
T Consensus 155 Ls~N~i~~~~~~~ 167 (844)
T 3j0a_A 155 FSSNQIFLVCEHE 167 (844)
T ss_dssp EESSCCCCCCSGG
T ss_pred CCCCcCCeeCHHH
Confidence 9999998877654
No 42
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=2.1e-20 Score=139.38 Aligned_cols=136 Identities=20% Similarity=0.322 Sum_probs=112.3
Q ss_pred ceEEEecCCCceeeCCC-CC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEc
Q psy14767 35 KRTVECIDRNFYTIPEG-ID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~~-~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l 111 (195)
.+.++.+++.++.++.. +. ++++.|++++|.++.+++..+. .+++|++|++++|.++.+++..|.++++|+.|++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHcc--CCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 57899999999988763 33 6899999999999988887776 7889999999999999998888999999999999
Q ss_pred CCCCCCcccCccc--ccccCeeecCCCcccccC-CCcCCCCCCCCEEecCCCcceeeccccccC
Q psy14767 112 SDNLLSTVPSLIY--IPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172 (195)
Q Consensus 112 ~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 172 (195)
++|.++.++...+ +++|+.|++++|.++.+. +..+..+++|++|++++|+++++++..+..
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 9999888777555 788999999999888754 557778888888888888888776544433
No 43
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=3.2e-20 Score=134.19 Aligned_cols=133 Identities=19% Similarity=0.355 Sum_probs=122.5
Q ss_pred eEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecC
Q psy14767 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLA 134 (195)
Q Consensus 57 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~ 134 (195)
+.+++++++++.++.... ++++.|++++|.++.+++..|..+++|+.|++++|.++.+....+ +++|+.|+++
T Consensus 14 ~~v~c~~~~l~~iP~~l~-----~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-----ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-----TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcCcCCCccC-----cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 468899999999887542 579999999999999999899999999999999999998876666 8999999999
Q ss_pred CCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767 135 HNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW 194 (195)
Q Consensus 135 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~ 194 (195)
+|.++.+++..|.++++|++|++++|+++++.+..+..+++|+.|++++|+++++++..|
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence 999999999889999999999999999999999999999999999999999999998765
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=3.1e-20 Score=140.37 Aligned_cols=158 Identities=15% Similarity=0.314 Sum_probs=120.8
Q ss_pred ceEEEecCCCceeeCCCCC--CceeEEEeecCCccccch-hhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEc
Q psy14767 35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQK-EIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~--~~l~~L~l~~n~i~~~~~-~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l 111 (195)
-+.++.+++.+..+|..+. ++++.|++++|.++.++. ..+. .+++|+.|++++|.+..+.+..+..+++|+.|++
T Consensus 80 L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 80 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp CCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTT--TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred cCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhh--hccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence 3556667777766665443 577888888888777665 4454 6778888888888888877777888888888888
Q ss_pred CCCCCCc--ccCccc-ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCC
Q psy14767 112 SDNLLST--VPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188 (195)
Q Consensus 112 ~~n~l~~--~~~~~~-~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~ 188 (195)
++|.++. ++.... +++|+.|++++|.++.+++..+..+++|+.|++++|+++++++..+..+++|+.|++++|++++
T Consensus 158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence 8888775 444333 7788888888888888877778888888888888888888877778888888888888888888
Q ss_pred CCCCCC
Q psy14767 189 LKPRTW 194 (195)
Q Consensus 189 ~~~~~~ 194 (195)
.++..+
T Consensus 238 ~~~~~~ 243 (306)
T 2z66_A 238 SKKQEL 243 (306)
T ss_dssp CSSSSC
T ss_pred cCHHHH
Confidence 776544
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=1.4e-19 Score=138.29 Aligned_cols=152 Identities=20% Similarity=0.360 Sum_probs=96.9
Q ss_pred ceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcce--ecccccCCCCCccEEEcC
Q psy14767 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF--VDDRAFRGVTNMDELDLS 112 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~--~~~~~~~~l~~l~~l~l~ 112 (195)
-+.++.+++.++.+|..+.++++.|++++|.++.+++..+. ++++|+.|++++|.++. +.+..+.++++|+.++++
T Consensus 102 L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 102 LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN--GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp CCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHT--TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred CCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhc--CCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 46777788888888877778888888888888888887776 67888888888888864 556677777777777777
Q ss_pred CCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCC
Q psy14767 113 DNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189 (195)
Q Consensus 113 ~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~ 189 (195)
+|.++.++...+ ++|+.|++++|.++.+.+..+..+++|+.|++++|+++++.+..+..+++|+.|++++|+++.+
T Consensus 180 ~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 255 (330)
T 1xku_A 180 DTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 255 (330)
T ss_dssp SSCCCSCCSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC
T ss_pred CCccccCCcccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC
Confidence 777766554332 4455555555555544444444444555555555544444443344444444444444444433
No 46
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.84 E-value=3.3e-20 Score=129.44 Aligned_cols=117 Identities=33% Similarity=0.581 Sum_probs=102.6
Q ss_pred cCCCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccc
Q psy14767 19 TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR 98 (195)
Q Consensus 19 ~~~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~ 98 (195)
++.+||..|.|. ...++|++++++.+|..++++++.|++++|.++.+++..|. ++++|+.|++++|+++.+++.
T Consensus 2 ~~~~CP~~C~C~----~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~i~~~ 75 (174)
T 2r9u_A 2 HSAGCPSQCSCD----QTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFD--HLVNLQQLYFNSNKLTAIPTG 75 (174)
T ss_dssp CCCSSCTTSEEC----SSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCCCCCCEEC----CcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhc--CCcCCCEEECCCCCCCccChh
Confidence 457899999997 58899999999999999999999999999999999888887 788999999999999999888
Q ss_pred ccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCccccc
Q psy14767 99 AFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQI 141 (195)
Q Consensus 99 ~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~ 141 (195)
.|..+++|+.|++++|.++.++...+ +++|+.|++++|.+...
T Consensus 76 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 76 VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 88889999999999998888887655 77888888888877644
No 47
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=4e-20 Score=149.14 Aligned_cols=154 Identities=18% Similarity=0.322 Sum_probs=137.7
Q ss_pred ceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCC
Q psy14767 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n 114 (195)
.+.++|+++.++.+|..++++++.|++++|.++.+++..+. ++++|++|++++|.++.+.+.+|.++++|++|++++|
T Consensus 2 ~~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 2 EFLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDIL--SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CCEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHT--TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred cceEecCCCCcccccccccccccEEECCCCcccccChhhcc--ccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 46899999999999999999999999999999999988887 7899999999999999999999999999999999999
Q ss_pred CCCcccCcccccccCeeecCCCcccccC-CCcCCCCCCCCEEecCCCcceeeccccccCCCCC--cEEEcCCCCC--CCC
Q psy14767 115 LLSTVPSLIYIPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI--DTLKLNGNKL--ASL 189 (195)
Q Consensus 115 ~l~~~~~~~~~~~l~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l--~~l~l~~n~l--~~~ 189 (195)
.++.+|.. .+++|++|++++|.++.++ +..+..+++|++|++++|.+++. .+..++++ +.|++++|.+ ++.
T Consensus 80 ~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 80 KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred ceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeeccccccccc
Confidence 99998887 7889999999999998864 46788999999999999999873 45667777 9999999998 666
Q ss_pred CCCCC
Q psy14767 190 KPRTW 194 (195)
Q Consensus 190 ~~~~~ 194 (195)
.+..|
T Consensus 156 ~~~~l 160 (520)
T 2z7x_B 156 DPEGL 160 (520)
T ss_dssp CTTTT
T ss_pred ccccc
Confidence 55543
No 48
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=7.1e-20 Score=132.41 Aligned_cols=134 Identities=15% Similarity=0.357 Sum_probs=121.1
Q ss_pred eEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecc-cccCCCCCccEEEcCCCCCCcccCccc--ccccCeeec
Q psy14767 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD-RAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL 133 (195)
Q Consensus 57 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~-~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l 133 (195)
+.+++++|.++.++.... ..++.|++++|.++.+.+ ..|..+++|+.|++++|.++.++...+ +++|+.|++
T Consensus 14 ~~l~~s~n~l~~iP~~~~-----~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP-----QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCSSCCSCCC-----TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCcccCccCCC-----CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 478999999999877543 457899999999999954 568899999999999999999988666 899999999
Q ss_pred CCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCCCCCC
Q psy14767 134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTWS 195 (195)
Q Consensus 134 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~ 195 (195)
++|.++.+++..|..+++|++|++++|+++++.+..+..+++|+.|++++|+++++++..|+
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 150 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc
Confidence 99999999998899999999999999999999889999999999999999999999887663
No 49
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.83 E-value=5.5e-20 Score=127.87 Aligned_cols=113 Identities=33% Similarity=0.582 Sum_probs=97.4
Q ss_pred CCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccC
Q psy14767 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101 (195)
Q Consensus 22 ~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~ 101 (195)
+||..|.|. .+.++|+++.++.+|..++++++.|++++|.|+.+++..|. ++++|++|++++|.++.+++..|.
T Consensus 2 ~CP~~C~C~----~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~f~ 75 (170)
T 3g39_A 2 ACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFD--RLTQLTRLDLDNNQLTVLPAGVFD 75 (170)
T ss_dssp CCC-CCEEE----TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTT
T ss_pred cCcCcCCcC----CCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhc--CcccCCEEECCCCCcCccChhhcc
Confidence 699999998 47899999999999999999999999999999999888887 788999999999999999888888
Q ss_pred CCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccc
Q psy14767 102 GVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQ 140 (195)
Q Consensus 102 ~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~ 140 (195)
++++|+.|++++|+++.++...+ +++|+.|++++|.++.
T Consensus 76 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 88888888888888888777655 7778888888887653
No 50
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=6.8e-20 Score=146.38 Aligned_cols=158 Identities=20% Similarity=0.385 Sum_probs=140.8
Q ss_pred ceEEEecCCCceeeCCC-CC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEc
Q psy14767 35 KRTVECIDRNFYTIPEG-ID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~~-~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l 111 (195)
.+.++.+++.++.++.. +. ++++.|++++|.++.+.+..|. ++++|++|++++|.++.+++..|.++++|+.|++
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN--NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh--CCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 57899999999998653 33 6899999999999999888887 7899999999999999999888999999999999
Q ss_pred CCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCC
Q psy14767 112 SDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189 (195)
Q Consensus 112 ~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~ 189 (195)
++|.++.++...+ +++|+.|++++|.++.+.+..|..+++|+.|++++|+++++++..+..+++|+.|++++|.++++
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 9999998877666 88999999999999999888899999999999999999998888888999999999999998888
Q ss_pred CCCCC
Q psy14767 190 KPRTW 194 (195)
Q Consensus 190 ~~~~~ 194 (195)
++..|
T Consensus 192 ~~~~~ 196 (477)
T 2id5_A 192 RDYSF 196 (477)
T ss_dssp CTTCS
T ss_pred Chhhc
Confidence 77654
No 51
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=2e-19 Score=140.30 Aligned_cols=135 Identities=19% Similarity=0.396 Sum_probs=98.4
Q ss_pred CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCee
Q psy14767 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI 131 (195)
Q Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l 131 (195)
.+++.++++++.++.+++..+. .+++|+.|++++|.++.+++.+|..+++|+.|++++|.++.++...+ +++|+.|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHH--HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEecCCchhhCChhHhc--ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 5677777777777777776665 56777777777777777777677777777777777777777666554 6777777
Q ss_pred ecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCC
Q psy14767 132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLK 190 (195)
Q Consensus 132 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~ 190 (195)
++++|.++.+++..|..+++|++|++++|.++++.+..+..+++|+.|++++|++++++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 181 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc
Confidence 77777777777666677777777777777777776666777777777777777776654
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=1.5e-19 Score=148.41 Aligned_cols=159 Identities=19% Similarity=0.318 Sum_probs=139.7
Q ss_pred CceEEEecCCCceeeCCCCC---CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEE
Q psy14767 34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (195)
Q Consensus 34 ~~~~~~c~~~~l~~~p~~~~---~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~ 110 (195)
..+.++.+++.++.+|.... ++++.|+|++|.|+.+++..|. ++++|++|++++|+++.+++++|.++.+|++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~--~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhc--CCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 35789999999999987543 6899999999999999999997 889999999999999999999999999999999
Q ss_pred cCCCCCCcccCccc--ccccCeeecCCCcccccC-CCcCCCCCCCCEEecCCCcceeeccccccCCCC----CcEEEcCC
Q psy14767 111 LSDNLLSTVPSLIY--IPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK----IDTLKLNG 183 (195)
Q Consensus 111 l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~----l~~l~l~~ 183 (195)
+++|.++.++...+ +++|+.|++++|.++.+. +..+..+++|++|++++|+++++.+..+..+.+ ...++++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 99999999988766 899999999999998765 456778899999999999999998777665433 34789999
Q ss_pred CCCCCCCCCCC
Q psy14767 184 NKLASLKPRTW 194 (195)
Q Consensus 184 n~l~~~~~~~~ 194 (195)
|+++.+++..+
T Consensus 211 n~l~~i~~~~~ 221 (635)
T 4g8a_A 211 NPMNFIQPGAF 221 (635)
T ss_dssp CCCCEECTTTT
T ss_pred CcccccCcccc
Confidence 99998887654
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=2.2e-19 Score=137.24 Aligned_cols=157 Identities=19% Similarity=0.318 Sum_probs=105.4
Q ss_pred ceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcce--ecccccCCC---------
Q psy14767 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF--VDDRAFRGV--------- 103 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~--~~~~~~~~l--------- 103 (195)
-+.++.+++.+..+|..+.++++.|++++|.++.+++..+. .+++|+.|++++|.++. +.+..+..+
T Consensus 104 L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~ 181 (332)
T 2ft3_A 104 LQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFS--GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181 (332)
T ss_dssp CCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGS--SCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCS
T ss_pred CCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhC--CCccCCEEECCCCccccCCCCcccccCCccCEEECcC
Confidence 45677777777777777667777778887777777777665 67778888888887753 444455444
Q ss_pred -----------CCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccc
Q psy14767 104 -----------TNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170 (195)
Q Consensus 104 -----------~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 170 (195)
++|+.|++++|.++.++...+ +++|+.|++++|.++.+++..+..+++|+.|++++|+++.++. .+
T Consensus 182 n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-~l 260 (332)
T 2ft3_A 182 AKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA-GL 260 (332)
T ss_dssp SBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT-TG
T ss_pred CCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh-hh
Confidence 234444444444444443333 5667777777777777766666677777777777777776643 46
Q ss_pred cCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767 171 YGIDKIDTLKLNGNKLASLKPRTW 194 (195)
Q Consensus 171 ~~l~~l~~l~l~~n~l~~~~~~~~ 194 (195)
..+++|+.|++++|+++++++..|
T Consensus 261 ~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp GGCTTCCEEECCSSCCCBCCTTSS
T ss_pred hcCccCCEEECCCCCCCccChhHc
Confidence 777778888888888887776654
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=2.4e-19 Score=147.01 Aligned_cols=136 Identities=19% Similarity=0.387 Sum_probs=100.0
Q ss_pred CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCee
Q psy14767 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI 131 (195)
Q Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l 131 (195)
.+++.+++++|.+..+++..+. .+++|+.|++++|.++.+++..|..+++|+.|++++|.++.++...+ +++|+.|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHH--HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCCCCCcCHHHHc--cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 5667777777777777777665 56777777777777777777677777777777777777777666554 6777777
Q ss_pred ecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767 132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191 (195)
Q Consensus 132 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~ 191 (195)
++++|.++.+++..|..+++|++|++++|.++++++..+..+++|+.|++++|.+++++.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 188 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 188 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh
Confidence 777777777776666777777777777777777777677777777777777777776653
No 55
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=3.8e-19 Score=145.79 Aligned_cols=159 Identities=22% Similarity=0.321 Sum_probs=143.0
Q ss_pred CceEEEecCCCceeeCC-CCC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEE
Q psy14767 34 GKRTVECIDRNFYTIPE-GID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (195)
Q Consensus 34 ~~~~~~c~~~~l~~~p~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~ 110 (195)
..+.++.+++.++.++. .+. +++++|++++|.++.+.+..|. ++++|++|++++|.++.+.+.+|.++++|++|+
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ--SQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhcc--CccccCeeeCCCCcccccChhhhcccccccEee
Confidence 35789999999999855 443 6899999999999999898887 889999999999999999999999999999999
Q ss_pred cCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCc--EEEcCCCCC
Q psy14767 111 LSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKID--TLKLNGNKL 186 (195)
Q Consensus 111 l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~--~l~l~~n~l 186 (195)
+++|.++.++...+ +++|++|++++|.++.++...+..+++|++|++++|.++++.+..++.+++++ .+++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 99999998865555 89999999999999988755666699999999999999999888899999999 899999999
Q ss_pred CCCCCCCC
Q psy14767 187 ASLKPRTW 194 (195)
Q Consensus 187 ~~~~~~~~ 194 (195)
+++++..|
T Consensus 192 ~~~~~~~~ 199 (606)
T 3t6q_A 192 AGIEPGAF 199 (606)
T ss_dssp CEECTTTT
T ss_pred CccChhHh
Confidence 99998776
No 56
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.1e-19 Score=140.65 Aligned_cols=151 Identities=19% Similarity=0.295 Sum_probs=134.7
Q ss_pred ceEEEecCCCceeeCCCCC----CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEE
Q psy14767 35 KRTVECIDRNFYTIPEGID----LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~----~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~ 110 (195)
.+.++.+++.++.+|.... ++++.|++++|.|+.+++..|. ++++|+.|++++|.++.+++..|.++++|+.|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV--PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc--CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 4689999999999887542 6899999999999999998887 789999999999999999998999999999999
Q ss_pred cCCCCCCcccCccc--ccccCeeecCCCcccccCCCcC---CCCCCCCEEecCCCcceeeccccccCCCC--CcEEEcCC
Q psy14767 111 LSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSF---QSTPGIRYIDMSNCQIHTIYSEAFYGIDK--IDTLKLNG 183 (195)
Q Consensus 111 l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~l~~--l~~l~l~~ 183 (195)
+++|.++.++...+ +++|+.|++++|.++.++...| ..+++|+.|++++|++++++...+..++. ++.|++++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 99999998877666 8999999999999999988776 56899999999999999998888888876 48899999
Q ss_pred CCCC
Q psy14767 184 NKLA 187 (195)
Q Consensus 184 n~l~ 187 (195)
|++.
T Consensus 199 N~~~ 202 (361)
T 2xot_A 199 NPLE 202 (361)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 9874
No 57
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=7.2e-19 Score=125.88 Aligned_cols=133 Identities=18% Similarity=0.324 Sum_probs=120.6
Q ss_pred eEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecC
Q psy14767 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLA 134 (195)
Q Consensus 57 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~ 134 (195)
+.++.+++.++.++.... +++++|++++|.++.+++..|..+++|+.|++++|.++.++...+ +++|+.|+++
T Consensus 10 ~~v~c~~~~l~~~p~~~~-----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIP-----AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCSSCCSCCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCccCCCCCCC-----CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 457888899988876543 579999999999999998889999999999999999999988766 8999999999
Q ss_pred CCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767 135 HNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW 194 (195)
Q Consensus 135 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~ 194 (195)
+|.++.+++..+..+++|++|++++|+++++++..+..+++|+.|++++|+++++++..|
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 144 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh
Confidence 999999998888999999999999999999988889999999999999999999998765
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=2.9e-19 Score=135.67 Aligned_cols=155 Identities=19% Similarity=0.226 Sum_probs=110.9
Q ss_pred CceEEEecCCCce---eeCCCCC--CceeEEEeec-CCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCcc
Q psy14767 34 GKRTVECIDRNFY---TIPEGID--LDTQVLDLSS-NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107 (195)
Q Consensus 34 ~~~~~~c~~~~l~---~~p~~~~--~~l~~L~l~~-n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~ 107 (195)
..+.++.+++.+. .+|..+. ++++.|++++ |.+....+..+. .+++|++|++++|.++...+..|..+++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA--KLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG--GCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh--cCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 4567888888887 4676654 6899999994 888865566665 678899999999998877777888888888
Q ss_pred EEEcCCCCCC-cccCccc-ccccCeeecCCCcccccCCCcCCCCC-CCCEEecCCCcceeeccccccCCCCCcEEEcCCC
Q psy14767 108 ELDLSDNLLS-TVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTP-GIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN 184 (195)
Q Consensus 108 ~l~l~~n~l~-~~~~~~~-~~~l~~l~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n 184 (195)
+|++++|.++ .+|.... +++|++|++++|.+++..+..+..++ +|++|++++|++++..+..+..+. |+.|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 9999888888 4444444 77888888888887754444555665 677777777777655555555544 555555555
Q ss_pred CCCCCCC
Q psy14767 185 KLASLKP 191 (195)
Q Consensus 185 ~l~~~~~ 191 (195)
++++.++
T Consensus 208 ~l~~~~~ 214 (313)
T 1ogq_A 208 MLEGDAS 214 (313)
T ss_dssp EEEECCG
T ss_pred cccCcCC
Confidence 5554444
No 59
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=5.9e-19 Score=128.30 Aligned_cols=134 Identities=21% Similarity=0.328 Sum_probs=120.9
Q ss_pred ceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeee
Q psy14767 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSIN 132 (195)
Q Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~ 132 (195)
..+.++.+++.++.++.... ++|+.|++++|.++.+.+..|..+++|+.|++++|.++.++...+ +++|+.|+
T Consensus 20 s~~~v~c~~~~l~~ip~~~~-----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP-----TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred eCCEeEccCCCcCccCCCCC-----CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 34568899999999887543 689999999999999999999999999999999999999988776 89999999
Q ss_pred cCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767 133 LAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW 194 (195)
Q Consensus 133 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~ 194 (195)
+++|.++.+++..|..+++|++|++++|+++.++ ..+..+++|+.|++++|+++++++..|
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~ 155 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAF 155 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC-TTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCcccccC-cccccCCCCCEEECCCCcCCccCHHHH
Confidence 9999999999888999999999999999999874 457899999999999999999998765
No 60
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=2.8e-19 Score=139.42 Aligned_cols=130 Identities=22% Similarity=0.399 Sum_probs=114.3
Q ss_pred ceEEEecCCCceeeCCCCC---CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEc
Q psy14767 35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~---~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l 111 (195)
.+.++..++.++.+|.... ++++.|++++|.++.+++..+. .+++|++|++++|.++.+++..|.++++|+.|++
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhcc--CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 3567888888888887652 7899999999999999888887 7899999999999999999888999999999999
Q ss_pred CCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeec
Q psy14767 112 SDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166 (195)
Q Consensus 112 ~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 166 (195)
++|.++.++...+ +++|++|++++|.++.+++..+..+++|++|++++|+++++.
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 181 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc
Confidence 9999999988775 889999999999999988888888899999999999887654
No 61
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.81 E-value=4.5e-19 Score=125.60 Aligned_cols=128 Identities=17% Similarity=0.334 Sum_probs=116.3
Q ss_pred eEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccc-ccCCCCCccEEEcCCCCCCcccCccc--ccccCeeec
Q psy14767 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR-AFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL 133 (195)
Q Consensus 57 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~-~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l 133 (195)
+.+++++|+++.++.... .+++.|++++|.++.+++. .|..+++|+.|++++|.++.++...+ +++|+.|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~-----~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-----LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-----TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCcCccCCC-----CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 678999999999887553 3799999999999999875 58899999999999999998866655 899999999
Q ss_pred CCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCC
Q psy14767 134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189 (195)
Q Consensus 134 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~ 189 (195)
++|+++.+++..|.++++|++|++++|+++++.+..+..+++|+.|++++|++++.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 99999999998899999999999999999999899999999999999999998754
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=6e-19 Score=143.48 Aligned_cols=158 Identities=20% Similarity=0.336 Sum_probs=141.8
Q ss_pred ceEEEecCCCceeeCCC-CC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEc
Q psy14767 35 KRTVECIDRNFYTIPEG-ID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~~-~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l 111 (195)
.+.++.+++.++.++.. +. +++++|++++|.++.+++..|. ++++|++|++++|.++.+++.+|.++++|++|++
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccccc--CchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 57899999999998764 33 6899999999999999988887 7899999999999999999999999999999999
Q ss_pred CCCCCCcccCccc--ccccCeeecCCCcccccC-CCcCCCCCCCCEEecCCCcceeeccccccCCCCC----cEEEcCCC
Q psy14767 112 SDNLLSTVPSLIY--IPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI----DTLKLNGN 184 (195)
Q Consensus 112 ~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l----~~l~l~~n 184 (195)
++|.++.++...+ +++|++|++++|.++.+. +..+..+++|++|++++|+++++.+..++.+.++ ..+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9999999887555 899999999999998754 5678889999999999999999988888888777 89999999
Q ss_pred CCCCCCCCCC
Q psy14767 185 KLASLKPRTW 194 (195)
Q Consensus 185 ~l~~~~~~~~ 194 (195)
.++++++..|
T Consensus 188 ~l~~~~~~~~ 197 (570)
T 2z63_A 188 PMNFIQPGAF 197 (570)
T ss_dssp CCCEECTTTT
T ss_pred CceecCHHHh
Confidence 9999988766
No 63
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.80 E-value=4.7e-19 Score=145.27 Aligned_cols=159 Identities=19% Similarity=0.295 Sum_probs=140.3
Q ss_pred CceEEEecCCCceeeCCCC-C--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEE
Q psy14767 34 GKRTVECIDRNFYTIPEGI-D--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (195)
Q Consensus 34 ~~~~~~c~~~~l~~~p~~~-~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~ 110 (195)
..+.++.+++.++.++... . ++++.|++++|.++.+++..|. ++++|++|++++|.++.+.+.+|.++++|++|+
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH--GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhh--chhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 3578999999999988743 3 6899999999999999988887 789999999999999999999999999999999
Q ss_pred cCCCCCCcccCccc--ccccCeeecCCCcccccC-CCcCCCCCCCCEEecCCCcceeeccccccCCCCCc----EEEcCC
Q psy14767 111 LSDNLLSTVPSLIY--IPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKID----TLKLNG 183 (195)
Q Consensus 111 l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~----~l~l~~ 183 (195)
+++|.++.++...+ +++|++|++++|.++.+. +..+..+++|++|++++|+++++.+..++.+.+++ .+++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 99999998886555 899999999999998754 56788999999999999999999887777665554 899999
Q ss_pred CCCCCCCCCCC
Q psy14767 184 NKLASLKPRTW 194 (195)
Q Consensus 184 n~l~~~~~~~~ 194 (195)
|+++++++..|
T Consensus 191 n~l~~~~~~~~ 201 (606)
T 3vq2_A 191 NPIDFIQDQAF 201 (606)
T ss_dssp CCCCEECTTTT
T ss_pred CCcceeCcccc
Confidence 99999988765
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=7.4e-19 Score=133.61 Aligned_cols=148 Identities=20% Similarity=0.293 Sum_probs=106.5
Q ss_pred eEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccccc-CCCCCccEEEcCCC
Q psy14767 36 RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF-RGVTNMDELDLSDN 114 (195)
Q Consensus 36 ~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~-~~l~~l~~l~l~~n 114 (195)
+.++.+++.+..++....++++.|++++|.++.+++..+. .+++|+.|++++|.++.+.+..+ ..+++|+.|++++|
T Consensus 102 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 102 ETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp CEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTG--GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhh--ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 4455555555555555556677777777777777666665 56778888888888877766555 35677888888888
Q ss_pred CCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCC
Q psy14767 115 LLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLA 187 (195)
Q Consensus 115 ~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~ 187 (195)
.++.++...++++|+.|++++|.++.+++. +..+++|+.|++++|++++++ ..+..+++|+.|++++|+++
T Consensus 180 ~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~-~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 180 FIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEEC-TTCCCCTTCCEEECTTCCCB
T ss_pred cCcccccccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchh-hHhhcCCCCCEEEccCCCcc
Confidence 887776666677788888888888777664 666778888888888887764 34677778888888888776
No 65
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.80 E-value=9.9e-19 Score=122.13 Aligned_cols=130 Identities=16% Similarity=0.289 Sum_probs=117.9
Q ss_pred eeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeec
Q psy14767 56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL 133 (195)
Q Consensus 56 l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l 133 (195)
.+.+++++++++.++.... ++++.|++++|.++.+++..|..+++|+.|++++|.++.++...+ +++|+.|++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~-----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP-----SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCccCCCCCC-----CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 4578899999999876543 589999999999999998889999999999999999999988765 899999999
Q ss_pred CCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCC
Q psy14767 134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLK 190 (195)
Q Consensus 134 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~ 190 (195)
++|.++.+++..+..+++|++|++++|+++++++..+..+++|+.|++++|++++..
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 999999999888899999999999999999998888899999999999999988754
No 66
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=4.4e-19 Score=135.55 Aligned_cols=75 Identities=12% Similarity=0.200 Sum_probs=36.9
Q ss_pred ceEEEecCCCceeeCCCCC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcC
Q psy14767 35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~ 112 (195)
...++++++.++.+|..+. ++++.|++++|.++.++... . .+++|++|++++|.++.+ |..+..+++|+.|+++
T Consensus 83 l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~-~--~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 83 RVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM-Q--QFAGLETLTLARNPLRAL-PASIASLNRLRELSIR 158 (328)
T ss_dssp CCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCG-G--GGTTCSEEEEESCCCCCC-CGGGGGCTTCCEEEEE
T ss_pred eeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHH-h--ccCCCCEEECCCCccccC-cHHHhcCcCCCEEECC
Confidence 4556666666666665443 45555666665555443322 2 344555555555555433 2233344444444444
Q ss_pred C
Q psy14767 113 D 113 (195)
Q Consensus 113 ~ 113 (195)
+
T Consensus 159 ~ 159 (328)
T 4fcg_A 159 A 159 (328)
T ss_dssp E
T ss_pred C
Confidence 3
No 67
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=5.9e-19 Score=144.73 Aligned_cols=128 Identities=22% Similarity=0.408 Sum_probs=103.1
Q ss_pred eEEEecCCCceeeCCCCC---CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcC
Q psy14767 36 RTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (195)
Q Consensus 36 ~~~~c~~~~l~~~p~~~~---~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~ 112 (195)
+.+++.++.+..+|..+. ++++.|++++|.++.+++..|. .+++|+.|++++|.++.+++..|.++++|+.|+++
T Consensus 54 ~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp SEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhc--CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 557777777778887542 6788889999888888887776 77888888888888888888888888888888888
Q ss_pred CCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceee
Q psy14767 113 DNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165 (195)
Q Consensus 113 ~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 165 (195)
+|.++.++...+ +++|+.|++++|.++.+++..+..+++|++|++++|.++++
T Consensus 132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 888888887765 77888888888888888777777777888888877777654
No 68
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.79 E-value=7.6e-19 Score=124.52 Aligned_cols=125 Identities=22% Similarity=0.395 Sum_probs=114.8
Q ss_pred eEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecC
Q psy14767 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLA 134 (195)
Q Consensus 57 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~ 134 (195)
+.+++++|.++.++.... ++++.|++++|.++.++ ..|..+++|+.|++++|.++.++...+ +++|+.|+++
T Consensus 13 ~~l~~~~~~l~~ip~~~~-----~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP-----RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCSSCCSCCC-----TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCCcCCCCCC-----CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 468999999999886543 57999999999999886 689999999999999999999988777 8999999999
Q ss_pred CCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCC
Q psy14767 135 HNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLA 187 (195)
Q Consensus 135 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~ 187 (195)
+|.++.+++..|..+++|++|++++|+++.+++..+..+++|+.|++++|++.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 99999999989999999999999999999998888999999999999999875
No 69
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.79 E-value=1.4e-18 Score=137.85 Aligned_cols=136 Identities=25% Similarity=0.438 Sum_probs=123.9
Q ss_pred CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCee
Q psy14767 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI 131 (195)
Q Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l 131 (195)
++++.+++++|.++.+.+..+. .+++|+.|++++|.++.+.+..|.++++|+.|++++|.++.++...+ +++|+.|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFS--HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred cCceEEEecCccccccchhhcc--cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEE
Confidence 4789999999999988888887 78999999999999999998899999999999999999998876655 8899999
Q ss_pred ecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767 132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191 (195)
Q Consensus 132 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~ 191 (195)
++++|.++.+.+..+..+++|++|++++|+++++++..+..+++|+.|++++|++++..+
T Consensus 353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999988889999999999999999999988888999999999999999987665
No 70
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=1.1e-18 Score=133.40 Aligned_cols=155 Identities=15% Similarity=0.281 Sum_probs=97.2
Q ss_pred ceEEEecCCCceeeCCCCC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecC----------------------
Q psy14767 35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC---------------------- 90 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n---------------------- 90 (195)
-++++.+++.+..+|..+. ++++.|++++|.++.++.. +. .+++|++|++++|
T Consensus 106 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~--~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 106 LQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IA--SLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp CSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GG--GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-Hh--cCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 4678888888887777654 6788888888888766544 33 4455555555554
Q ss_pred -----------CcceecccccCCCCCccEEEcCCCCCCcccCccc-ccccCeeecCCCcccccCCCcCCCCCCCCEEecC
Q psy14767 91 -----------KLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMS 158 (195)
Q Consensus 91 -----------~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~-~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~ 158 (195)
.++.++ ..+..+++|+.|++++|.++.++.... +++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 183 ~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 183 VNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261 (328)
T ss_dssp TTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred CCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence 444332 234555556666666666665554433 5666666666666555555566666677777777
Q ss_pred CCcceeeccccccCCCCCcEEEcCCCCCCCCCCCC
Q psy14767 159 NCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193 (195)
Q Consensus 159 ~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~ 193 (195)
+|.+.+..+..+..+++|+.|++++|++.+..|+.
T Consensus 262 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp TCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred CCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 76666555556667777777777777666555543
No 71
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.79 E-value=1.3e-18 Score=144.46 Aligned_cols=159 Identities=19% Similarity=0.310 Sum_probs=142.0
Q ss_pred CceEEEecCCCceeeCCC-CC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEE
Q psy14767 34 GKRTVECIDRNFYTIPEG-ID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (195)
Q Consensus 34 ~~~~~~c~~~~l~~~p~~-~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~ 110 (195)
..+.++.+++.++.+|.. +. ++++.|++++|.++.+.+..+. ++++|++|++++|.++.+++.+|.++++|+.|+
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ--KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHH--HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHh--cccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 357899999999988864 32 6899999999999999888887 789999999999999999988899999999999
Q ss_pred cCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeecccccc--CCCCCcEEEcCCCCC
Q psy14767 111 LSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY--GIDKIDTLKLNGNKL 186 (195)
Q Consensus 111 l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~l~~l~l~~n~l 186 (195)
+++|.++.++...+ +++|++|++++|.++.+++..+..+++|++|++++|.++++.+..+. .+++|+.|++++|++
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 99999999887666 89999999999999998888889999999999999999998776654 458999999999999
Q ss_pred CCCCCCCC
Q psy14767 187 ASLKPRTW 194 (195)
Q Consensus 187 ~~~~~~~~ 194 (195)
+++++..|
T Consensus 184 ~~~~~~~~ 191 (680)
T 1ziw_A 184 KEFSPGCF 191 (680)
T ss_dssp CCBCTTGG
T ss_pred cccChhhh
Confidence 99888654
No 72
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=7.3e-19 Score=142.51 Aligned_cols=167 Identities=19% Similarity=0.325 Sum_probs=137.0
Q ss_pred CCCCCCCeeccc------------CCceEEEecCCCceeeCC-CCC--CceeEEEeecCCccccchhhhhccCCCCccEE
Q psy14767 21 ASCPLGCSCKWK------------AGKRTVECIDRNFYTIPE-GID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKL 85 (195)
Q Consensus 21 ~~c~~~c~c~~~------------~~~~~~~c~~~~l~~~p~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l 85 (195)
.+||..|.|+.. ...+.++.+++.++.++. .+. ++++.|++++|.++.+++..|. ++++|++|
T Consensus 2 ~~C~~~~~c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L 79 (549)
T 2z81_A 2 LSCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY--SLGSLEHL 79 (549)
T ss_dssp CEECTTSEEECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTT--TCTTCCEE
T ss_pred ccCCCCceEECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcc--ccccCCEE
Confidence 358888877643 135789999999998854 443 6899999999999999988887 78999999
Q ss_pred EeecCCcceecccccCCCCCccEEEcCCCCCCcc--cCccc-ccccCeeecCCCc-ccccCCCcCCCCCCCCEEecCCCc
Q psy14767 86 YLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV--PSLIY-IPYLKSINLAHNP-IHQISSYSFQSTPGIRYIDMSNCQ 161 (195)
Q Consensus 86 ~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~--~~~~~-~~~l~~l~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~ 161 (195)
++++|.++.+++.+|.++++|++|++++|.++.+ +.... +++|+.|++++|. +..+++..+..+++|++|++++|+
T Consensus 80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp ECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 9999999999988899999999999999999865 33333 8899999999998 677777788899999999999999
Q ss_pred ceeeccccccC------------------------CCCCcEEEcCCCCCCCC
Q psy14767 162 IHTIYSEAFYG------------------------IDKIDTLKLNGNKLASL 189 (195)
Q Consensus 162 l~~~~~~~~~~------------------------l~~l~~l~l~~n~l~~~ 189 (195)
+++..+..+.. +++|+.|++++|++++.
T Consensus 160 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 160 LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred ccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence 98876655543 56677777777777765
No 73
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=2.6e-18 Score=122.05 Aligned_cols=146 Identities=16% Similarity=0.260 Sum_probs=120.4
Q ss_pred ceEEEecCCCceeeCCCCC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcC
Q psy14767 35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~ 112 (195)
.+.++++++.+..+| ++. ++++.|++++|.++.++ .+. .+++|++|++++|.++...+..+..+++|+.|+++
T Consensus 46 L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 46 LTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp CCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGT--TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred ccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhh--cCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 578999999999888 443 78999999999887764 344 68899999999999998777789999999999999
Q ss_pred CCCCCcc-cCccc-ccccCeeecCCCc-ccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCC
Q psy14767 113 DNLLSTV-PSLIY-IPYLKSINLAHNP-IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189 (195)
Q Consensus 113 ~n~l~~~-~~~~~-~~~l~~l~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~ 189 (195)
+|.++.. +.... +++|+.|++++|. ++.++ .+..+++|++|++++|+++++. .+..+++|+.|++++|++.+.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~~ 196 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGGK 196 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC-----
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCCc
Confidence 9999863 33223 8899999999998 88775 5788899999999999999875 688899999999999998753
No 74
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=1.1e-18 Score=132.46 Aligned_cols=102 Identities=15% Similarity=0.200 Sum_probs=56.6
Q ss_pred eEEEecC-CCce-eeCCCCC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEc
Q psy14767 36 RTVECID-RNFY-TIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (195)
Q Consensus 36 ~~~~c~~-~~l~-~~p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l 111 (195)
+.++.++ +.+. .+|..+. ++++.|++++|.++...+..+. .+++|++|++++|.++...+..+..+++|+.|++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS--QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG--GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh--CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 4566663 5554 3554443 5667777777777644444444 4566666666666666555555666666666666
Q ss_pred CCCCCC-cccCccc-cc-ccCeeecCCCccc
Q psy14767 112 SDNLLS-TVPSLIY-IP-YLKSINLAHNPIH 139 (195)
Q Consensus 112 ~~n~l~-~~~~~~~-~~-~l~~l~l~~n~~~ 139 (195)
++|.++ .+|.... ++ +|+.|++++|.++
T Consensus 157 ~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp CSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred cCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 666665 3333332 32 4444444444443
No 75
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.78 E-value=1e-18 Score=121.03 Aligned_cols=141 Identities=18% Similarity=0.245 Sum_probs=121.1
Q ss_pred eeCCCCCCceeEEEeecCCcc--ccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCc-ccCcc
Q psy14767 47 TIPEGIDLDTQVLDLSSNNIN--VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST-VPSLI 123 (195)
Q Consensus 47 ~~p~~~~~~l~~L~l~~n~i~--~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~-~~~~~ 123 (195)
.++...++.++.|++++|.++ .++.. +. .+++|+.|++++|.++.+ ..+..+++|+.|++++|.++. ++...
T Consensus 17 ~~~~~~~~~L~~L~l~~n~l~~~~i~~~-~~--~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 17 ELRNRTPAAVRELVLDNCKSNDGKIEGL-TA--EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp HHTTSCTTSCSEEECCSCBCBTTBCSSC-CG--GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred hhccCCcccCCEEECCCCCCChhhHHHH-HH--hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH
Confidence 345566678999999999998 66554 44 678999999999999988 578899999999999999997 44444
Q ss_pred c-ccccCeeecCCCcccccCC-CcCCCCCCCCEEecCCCcceeecc---ccccCCCCCcEEEcCCCCCCCCCCC
Q psy14767 124 Y-IPYLKSINLAHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTIYS---EAFYGIDKIDTLKLNGNKLASLKPR 192 (195)
Q Consensus 124 ~-~~~l~~l~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~l~~l~l~~n~l~~~~~~ 192 (195)
. +++|+.|++++|.++.++. ..+..+++|+.|++++|.++++++ ..+..+++|+.|++++|.+..++..
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 4 8999999999999998764 578889999999999999999876 5789999999999999999988764
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=3.3e-18 Score=137.15 Aligned_cols=147 Identities=20% Similarity=0.291 Sum_probs=87.7
Q ss_pred EEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccC-CCCCccEEEcCCCC
Q psy14767 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR-GVTNMDELDLSDNL 115 (195)
Q Consensus 37 ~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~-~l~~l~~l~l~~n~ 115 (195)
.++.+++.+..+|....++++.|++++|.++.+.+..+. .+++|+.|++++|.++.+.+..+. .+++|+.|++++|.
T Consensus 103 ~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 103 TLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGG--GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhc--CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 344444444444443345566666666666665555554 456666666666666665555554 45666666666666
Q ss_pred CCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCC
Q psy14767 116 LSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLA 187 (195)
Q Consensus 116 l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~ 187 (195)
++.++...++++|+.|++++|.++++++. +..+++|+.|++++|.+++++. .+..+++|+.|++++|++.
T Consensus 181 l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 181 IYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-TCCCCTTCCEEECTTCCBC
T ss_pred cccccccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccch-hhccCCCCCEEEcCCCCCc
Confidence 66665555566666666666666666553 5556666666666666666533 3556666666666666655
No 77
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=3.3e-18 Score=126.87 Aligned_cols=147 Identities=18% Similarity=0.277 Sum_probs=119.5
Q ss_pred CceEEEecCCCceeeCC-CCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcC
Q psy14767 34 GKRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (195)
Q Consensus 34 ~~~~~~c~~~~l~~~p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~ 112 (195)
..+.++++++.+..+|. .-.++++.|++++|.++.+++ +. .+++|+.|++++|.++.+++. .. .+|+.|+++
T Consensus 42 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~--~l~~L~~L~L~~N~l~~l~~~--~~-~~L~~L~L~ 114 (263)
T 1xeu_A 42 GVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LK--DLTKLEELSVNRNRLKNLNGI--PS-ACLSRLFLD 114 (263)
T ss_dssp TCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCSSCCEEECCSSCCSCCTTC--CC-SSCCEEECC
T ss_pred cCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hc--cCCCCCEEECCCCccCCcCcc--cc-CcccEEEcc
Confidence 35778888888888873 113689999999999998877 54 788999999999999887653 33 889999999
Q ss_pred CCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767 113 DNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191 (195)
Q Consensus 113 ~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~ 191 (195)
+|.++.++....+++|+.|++++|+++.++ .+..+++|+.|++++|+++++ ..+..+++|+.|++++|++++.+.
T Consensus 115 ~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 115 NNELRDTDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp SSCCSBSGGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred CCccCCChhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 999988765434888999999999998875 577788999999999999887 568888999999999998877654
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=1e-17 Score=126.86 Aligned_cols=144 Identities=15% Similarity=0.305 Sum_probs=76.5
Q ss_pred eEEEecCCCceeeCCCCC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCC
Q psy14767 36 RTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113 (195)
Q Consensus 36 ~~~~c~~~~l~~~p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~ 113 (195)
+.++.+++.+..++. +. ++++.|++++|.++.++ .+. .+++|+.|++++|.++.+++ +..+++|+.|++++
T Consensus 66 ~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 66 IGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--AIA--GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDL 138 (308)
T ss_dssp CEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG--GGT--TCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch--hhc--CCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCC
Confidence 344444444444433 11 34455555555544432 122 34455555555555554432 44555555555555
Q ss_pred CCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCC
Q psy14767 114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLK 190 (195)
Q Consensus 114 n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~ 190 (195)
|.++.++....+++|+.|++++|.++.+++ +..+++|+.|++++|+++++.+ +..+++|+.|++++|++++++
T Consensus 139 n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 139 NQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp SCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG
T ss_pred CccCcCccccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc
Confidence 555554442225556666666666655543 5556666666666666666543 556666677777777666654
No 79
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=1.1e-17 Score=125.76 Aligned_cols=146 Identities=19% Similarity=0.337 Sum_probs=93.6
Q ss_pred ceEEEecCCCceeeCCC-CCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCC
Q psy14767 35 KRTVECIDRNFYTIPEG-IDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~ 113 (195)
.+.++++++.+..+|.- -.++++.|++++|.++.+++ +. .+++|+.|++++|.++.++ .+..+++|+.|++++
T Consensus 48 L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~--~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LA--NLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEH 121 (291)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECTT
T ss_pred ccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cc--cCCCCCEEECCCCcCCCCh--hhccCCCCCEEECCC
Confidence 45677777777666531 12567777777777777665 43 5667777777777776654 266667777777777
Q ss_pred CCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCC
Q psy14767 114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLK 190 (195)
Q Consensus 114 n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~ 190 (195)
|.++.++....+++|+.|++++|.++.+ ..+..+++|+.|++++|+++++.+ +..+++|+.|++++|++++++
T Consensus 122 n~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~ 194 (291)
T 1h6t_A 122 NGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR 194 (291)
T ss_dssp SCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred CcCCCChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh
Confidence 7776654333366677777777766665 245566666666666666666544 566666666666666666553
No 80
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.76 E-value=3.7e-18 Score=143.70 Aligned_cols=80 Identities=19% Similarity=0.171 Sum_probs=44.9
Q ss_pred eEEEecCCCce-eeCCCCC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcC
Q psy14767 36 RTVECIDRNFY-TIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (195)
Q Consensus 36 ~~~~c~~~~l~-~~p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~ 112 (195)
+.++..++.+. .+|..+. ++++.|++++|.++...+..+. .+++|+.|++++|.++...|..+..+++|+.++++
T Consensus 469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG--RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh--cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 44555555554 2343332 4566666666666644444444 45666666666666665555556666666666666
Q ss_pred CCCCC
Q psy14767 113 DNLLS 117 (195)
Q Consensus 113 ~n~l~ 117 (195)
+|.++
T Consensus 547 ~N~l~ 551 (768)
T 3rgz_A 547 TNLFN 551 (768)
T ss_dssp SSEEE
T ss_pred CCccC
Confidence 65544
No 81
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=1.4e-17 Score=135.39 Aligned_cols=138 Identities=18% Similarity=0.307 Sum_probs=103.5
Q ss_pred CceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCC
Q psy14767 34 GKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113 (195)
Q Consensus 34 ~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~ 113 (195)
..+.++++++.+..+|..+.++++.|++++|.++.++ . .+++|+.|++++|.++.++. +.+ +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip-~-----~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP-E-----LPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC-C-----CCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc-c-----ccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence 4678999999999999988889999999999999877 2 35789999999999888655 543 788888888
Q ss_pred CCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767 114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191 (195)
Q Consensus 114 n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~ 191 (195)
|.++.+|. .+++|+.|++++|.++.++. .+++|+.|++++|++++++. +. ++|+.|++++|+++.+|.
T Consensus 130 N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 130 NQLTMLPE--LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC
T ss_pred CcCCCCCC--cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh
Confidence 88887776 46677777777777776654 34567777777777766543 33 566666666666665554
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=1.7e-17 Score=125.67 Aligned_cols=147 Identities=25% Similarity=0.376 Sum_probs=115.5
Q ss_pred ceEEEecCCCceeeCCC-CCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCC
Q psy14767 35 KRTVECIDRNFYTIPEG-IDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~ 113 (195)
.+.+++.++.+..+|.- -.++++.|++++|.++.+++ +. .+++|++|++++|.++.++ .+..+++|+.|++++
T Consensus 43 L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~--~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 43 ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LK--NLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTS 116 (308)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTT
T ss_pred cCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--Hc--cCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCC
Confidence 56788888888777631 12688888888888888776 44 6788888888888888764 577888888888888
Q ss_pred CCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767 114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191 (195)
Q Consensus 114 n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~ 191 (195)
|.++.++....+++|+.|++++|.++.+++ +..+++|+.|++++|+++++.+ +..+++|+.|++++|+++++++
T Consensus 117 n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 117 TQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp SCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCchhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh
Confidence 888877663337888888888888887765 6677888888888888888754 7788888888888888887764
No 83
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=7.2e-18 Score=128.15 Aligned_cols=147 Identities=20% Similarity=0.227 Sum_probs=111.8
Q ss_pred eEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCC
Q psy14767 36 RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115 (195)
Q Consensus 36 ~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~ 115 (195)
+.++.+++.++.+|.. +.++.|++++|.++.++.. .+++|+.|++++|.++.+.+..+..+++|+.|++++|.
T Consensus 83 ~~L~Ls~n~l~~l~~~--~~L~~L~l~~n~l~~~~~~-----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 83 RTLDLNNNYVQELLVG--PSIETLHAANNNISRVSCS-----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp CEEECCSSEEEEEEEC--TTCCEEECCSSCCSEEEEC-----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC
T ss_pred CEEECcCCccccccCC--CCcCEEECCCCccCCcCcc-----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC
Confidence 3344444444444322 3455555555555554433 24678999999999999888888889999999999999
Q ss_pred CCcccCccc---ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCCC
Q psy14767 116 LSTVPSLIY---IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPR 192 (195)
Q Consensus 116 l~~~~~~~~---~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~ 192 (195)
++.++...+ +++|+.|++++|.++.++.. ..+++|++|++++|+++++++. +..+++|+.|++++|+++++++.
T Consensus 156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~ 232 (317)
T 3o53_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA 232 (317)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT
T ss_pred CCcccHHHHhhccCcCCEEECCCCcCcccccc--cccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhH
Confidence 997665443 68999999999999988643 3478999999999999998765 88889999999999999987653
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=4.7e-18 Score=128.90 Aligned_cols=152 Identities=16% Similarity=0.168 Sum_probs=70.5
Q ss_pred eEEEecCCCce-eeCCCC----CCceeEEEeecCCccccchhhhhccCC-----CCccEEEeecCCcceecccccCCCCC
Q psy14767 36 RTVECIDRNFY-TIPEGI----DLDTQVLDLSSNNINVLQKEIFLQMGI-----TNIQKLYLRKCKLEFVDDRAFRGVTN 105 (195)
Q Consensus 36 ~~~~c~~~~l~-~~p~~~----~~~l~~L~l~~n~i~~~~~~~~~~~~l-----~~L~~l~l~~n~i~~~~~~~~~~l~~ 105 (195)
+.++.+++.+. .+|..+ .++++.|++++|.++.+ +..+. .+ ++|++|++++|.++.+++..|..+++
T Consensus 98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~--~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLA--ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHH--HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHH--HHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 45555555555 345433 24566666666666655 22222 22 55666666666666555555555566
Q ss_pred ccEEEcCCCCCCc---ccCcc--c-ccccCeeecCCCcccccC---CCcCCCCCCCCEEecCCCcceeecc-ccccCCCC
Q psy14767 106 MDELDLSDNLLST---VPSLI--Y-IPYLKSINLAHNPIHQIS---SYSFQSTPGIRYIDMSNCQIHTIYS-EAFYGIDK 175 (195)
Q Consensus 106 l~~l~l~~n~l~~---~~~~~--~-~~~l~~l~l~~n~~~~~~---~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~ 175 (195)
|+.|++++|++.. ++... . +++|+.|++++|+++.++ ...+..+++|++|++++|++++..+ ..+..+++
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 6666666555432 11111 1 444455555555444221 1122233444444444444444321 22333344
Q ss_pred CcEEEcCCCCCCCCC
Q psy14767 176 IDTLKLNGNKLASLK 190 (195)
Q Consensus 176 l~~l~l~~n~l~~~~ 190 (195)
|+.|++++|+++.+|
T Consensus 255 L~~L~Ls~N~l~~ip 269 (312)
T 1wwl_A 255 LNSLNLSFTGLKQVP 269 (312)
T ss_dssp CCEEECTTSCCSSCC
T ss_pred CCEEECCCCccChhh
Confidence 444444444444333
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=2.8e-17 Score=126.56 Aligned_cols=158 Identities=16% Similarity=0.300 Sum_probs=128.8
Q ss_pred CceEEEecCCCceeeCCCCC---CceeEEEeecCCcc-ccchhhhhccCCCCccE-EEeecCCcceecccccCCCCCccE
Q psy14767 34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNIN-VLQKEIFLQMGITNIQK-LYLRKCKLEFVDDRAFRGVTNMDE 108 (195)
Q Consensus 34 ~~~~~~c~~~~l~~~p~~~~---~~l~~L~l~~n~i~-~~~~~~~~~~~l~~L~~-l~l~~n~i~~~~~~~~~~l~~l~~ 108 (195)
..+.++.+++.++.+|.+.. ++++.|++++|.+. .+++..|. +++++.+ +.+.+|+++.+++++|..+++|+.
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~--~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS--NLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC--SCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh--cchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 35789999999999998653 68999999999985 47777776 6777665 556678999999889999999999
Q ss_pred EEcCCCCCCcccCcc-------------------------c---ccccCeeecCCCcccccCCCcCCCCCCCCEEecC-C
Q psy14767 109 LDLSDNLLSTVPSLI-------------------------Y---IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMS-N 159 (195)
Q Consensus 109 l~l~~n~l~~~~~~~-------------------------~---~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~-~ 159 (195)
+++++|.++.++... + ...++.|++++|+++.+++..|.. .+++.+++. +
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~-~~L~~l~l~~~ 187 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG-TQLDELNLSDN 187 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT-EEEEEEECTTC
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccc-cchhHHhhccC
Confidence 999888876554322 1 124667889999999998877755 679999997 5
Q ss_pred CcceeeccccccCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767 160 CQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW 194 (195)
Q Consensus 160 n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~ 194 (195)
|.++.+++++|..+++|+.|++++|+++.+|+..|
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~ 222 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred CcccCCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence 78999988899999999999999999999998766
No 86
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=3.1e-17 Score=121.59 Aligned_cols=141 Identities=17% Similarity=0.249 Sum_probs=121.5
Q ss_pred EEecCCCceeeCC-CCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCC
Q psy14767 38 VECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116 (195)
Q Consensus 38 ~~c~~~~l~~~p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l 116 (195)
.++.++.+++++. .-.++++.|++++|.++.++ .+. .+++|+.|++++|.++.+++ +..+++|+.|++++|++
T Consensus 24 l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~--~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 24 QNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQ--FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRL 97 (263)
T ss_dssp HHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGG--GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCC
T ss_pred HHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHh--hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCcc
Confidence 4456667766662 11268999999999999887 344 67899999999999999876 88999999999999999
Q ss_pred CcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCC
Q psy14767 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189 (195)
Q Consensus 117 ~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~ 189 (195)
+.++.... ++|+.|++++|.++.++ .+..+++|+.|++++|++++++ .+..+++|+.|++++|+++++
T Consensus 98 ~~l~~~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 98 KNLNGIPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp SCCTTCCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC
T ss_pred CCcCcccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch
Confidence 99887666 89999999999999875 4888999999999999999984 588999999999999999987
No 87
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.73 E-value=1.5e-17 Score=140.03 Aligned_cols=156 Identities=19% Similarity=0.139 Sum_probs=115.5
Q ss_pred ceEEEecCCCcee-eCCCCC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEc
Q psy14767 35 KRTVECIDRNFYT-IPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (195)
Q Consensus 35 ~~~~~c~~~~l~~-~p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l 111 (195)
-+.++..++.+.. +|..+. ++++.|++++|.++...+..+. .+++|+.|++++|.++...+..+..+++|+.|++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG--SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh--cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 4566666666663 454443 5777778888877766566565 5677888888888887766777777888888888
Q ss_pred CCCCCCc-ccCccc-ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCC
Q psy14767 112 SDNLLST-VPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189 (195)
Q Consensus 112 ~~n~l~~-~~~~~~-~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~ 189 (195)
++|.++. +|.... +++|+.|++++|++++..+.++..+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence 8888874 343333 77888888888888876666777888888888888888877777788888888888888888755
Q ss_pred CCC
Q psy14767 190 KPR 192 (195)
Q Consensus 190 ~~~ 192 (195)
.|.
T Consensus 554 ip~ 556 (768)
T 3rgz_A 554 IPA 556 (768)
T ss_dssp CCG
T ss_pred CCh
Confidence 443
No 88
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=8.7e-18 Score=127.42 Aligned_cols=152 Identities=13% Similarity=0.077 Sum_probs=109.7
Q ss_pred ceEEEecCCCceeeCCCC-------CCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCccee---c-ccccCCC
Q psy14767 35 KRTVECIDRNFYTIPEGI-------DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFV---D-DRAFRGV 103 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~-------~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~---~-~~~~~~l 103 (195)
-+.++.+++.+..+|..+ .++++.|++++|.++.+++..+. .+++|++|++++|.+... + ...+..+
T Consensus 123 L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR--VFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC--CCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred ccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc--cCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 577888888887765432 26888999999999888877776 778899999998886542 1 1123677
Q ss_pred CCccEEEcCCCCCCcccC---ccc--ccccCeeecCCCcccccCC-CcCCCCCCCCEEecCCCcceeeccccccCCCCCc
Q psy14767 104 TNMDELDLSDNLLSTVPS---LIY--IPYLKSINLAHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKID 177 (195)
Q Consensus 104 ~~l~~l~l~~n~l~~~~~---~~~--~~~l~~l~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~ 177 (195)
++|+.|++++|.++.++. ..+ +++|+.|++++|.+++..+ ..+..+++|++|++++|+++.++... . ++|+
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~-~--~~L~ 277 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL-P--AKLS 277 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSC-C--SEEE
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhc-c--CCce
Confidence 888888888888874433 222 5788888888888877653 44556678888888888888665433 2 6778
Q ss_pred EEEcCCCCCCCCCC
Q psy14767 178 TLKLNGNKLASLKP 191 (195)
Q Consensus 178 ~l~l~~n~l~~~~~ 191 (195)
.|++++|+++++|.
T Consensus 278 ~L~Ls~N~l~~~p~ 291 (312)
T 1wwl_A 278 VLDLSYNRLDRNPS 291 (312)
T ss_dssp EEECCSSCCCSCCC
T ss_pred EEECCCCCCCCChh
Confidence 88888888887743
No 89
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.73 E-value=6.3e-17 Score=130.47 Aligned_cols=134 Identities=20% Similarity=0.235 Sum_probs=69.6
Q ss_pred CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceec--ccccCCCCCccEEEcCCCCCCc-ccCccc--cccc
Q psy14767 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD--DRAFRGVTNMDELDLSDNLLST-VPSLIY--IPYL 128 (195)
Q Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~--~~~~~~l~~l~~l~l~~n~l~~-~~~~~~--~~~l 128 (195)
++++.|++++|.++...+..+. .+++|+.|++++|.++.++ +..+..+++|+.|++++|.++. ++...+ +++|
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCG--HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCC--CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred CcccEEEeECCccChhhhhhhc--cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 4566666666666654444443 4556666666666665432 2345555666666666666654 554433 4555
Q ss_pred CeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCCC
Q psy14767 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPR 192 (195)
Q Consensus 129 ~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~ 192 (195)
+.|++++|++++..+..+. ++|+.|++++|+++.++.. +..+++|+.|++++|+++++|+.
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~L~~N~l~~l~~~ 462 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQ-VVKLEALQELNVASNQLKSVPDG 462 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCCTT
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchh-hhcCCCCCEEECCCCcCCccCHH
Confidence 5555555555433222221 3455555555555544332 22555555555555555555543
No 90
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.73 E-value=9.7e-17 Score=130.65 Aligned_cols=131 Identities=15% Similarity=0.179 Sum_probs=62.0
Q ss_pred CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceec--ccccCCCCCccEEEcCCCCCCc-ccCccc--cc--
Q psy14767 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD--DRAFRGVTNMDELDLSDNLLST-VPSLIY--IP-- 126 (195)
Q Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~--~~~~~~l~~l~~l~l~~n~l~~-~~~~~~--~~-- 126 (195)
++++.|++++|.+++..+..+. .+++|+.|++++|.++.++ +..+..+++|+.|++++|.++. ++...+ ++
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCS--TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCC--SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCceEEECCCCccccchhhhhc--ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 3445555555555443333333 3444555555555544432 2234444455555555555443 443322 34
Q ss_pred --------------------ccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCC
Q psy14767 127 --------------------YLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKL 186 (195)
Q Consensus 127 --------------------~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l 186 (195)
+|+.|++++|+++.++...+ .+++|++|++++|+++++++..+..+++|+.+++++|++
T Consensus 431 ~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred CEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 45555555555554444333 445555555555555554444444555555555555554
Q ss_pred C
Q psy14767 187 A 187 (195)
Q Consensus 187 ~ 187 (195)
.
T Consensus 510 ~ 510 (562)
T 3a79_B 510 D 510 (562)
T ss_dssp C
T ss_pred C
Confidence 4
No 91
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=1.6e-17 Score=133.14 Aligned_cols=150 Identities=19% Similarity=0.193 Sum_probs=113.7
Q ss_pred ceEEEecCCCceeeCC-CCCCceeEEEeecCCcc-------------------ccchhhhhccCCCCccEEEeecCCcce
Q psy14767 35 KRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNIN-------------------VLQKEIFLQMGITNIQKLYLRKCKLEF 94 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~-~~~~~l~~L~l~~n~i~-------------------~~~~~~~~~~~l~~L~~l~l~~n~i~~ 94 (195)
-+.++.+++.+...++ .-.++++.|++++|.++ .++.. .+++|+.|++++|.++.
T Consensus 60 L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~-----~l~~L~~L~L~~N~l~~ 134 (487)
T 3oja_A 60 LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS-----RGQGKKNIYLANNKITM 134 (487)
T ss_dssp CCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEEC-----CCSSCEEEECCSSCCCS
T ss_pred CCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCcc-----ccCCCCEEECCCCCCCC
Confidence 3556666666554332 11245555555555544 43332 34678999999999999
Q ss_pred ecccccCCCCCccEEEcCCCCCCcccCccc---ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeecccccc
Q psy14767 95 VDDRAFRGVTNMDELDLSDNLLSTVPSLIY---IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171 (195)
Q Consensus 95 ~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~---~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 171 (195)
+.+..+..+++|+.|++++|.++.++...+ +++|+.|++++|.++.+++ ...+++|+.|++++|.++++++. +.
T Consensus 135 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~ 211 (487)
T 3oja_A 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQ 211 (487)
T ss_dssp GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GG
T ss_pred CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-Hc
Confidence 888888889999999999999997554433 6899999999999998865 33578999999999999998766 88
Q ss_pred CCCCCcEEEcCCCCCCCCCCC
Q psy14767 172 GIDKIDTLKLNGNKLASLKPR 192 (195)
Q Consensus 172 ~l~~l~~l~l~~n~l~~~~~~ 192 (195)
.+++|+.|++++|.++++|+.
T Consensus 212 ~l~~L~~L~Ls~N~l~~lp~~ 232 (487)
T 3oja_A 212 SAAGVTWISLRNNKLVLIEKA 232 (487)
T ss_dssp GGTTCSEEECTTSCCCEECTT
T ss_pred CCCCccEEEecCCcCcccchh
Confidence 889999999999999988764
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=2.7e-17 Score=123.62 Aligned_cols=148 Identities=16% Similarity=0.228 Sum_probs=127.4
Q ss_pred CceEEEecCCCceeeCC-CCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcC
Q psy14767 34 GKRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112 (195)
Q Consensus 34 ~~~~~~c~~~~l~~~p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~ 112 (195)
.-+.++++++.++.++. .-.++++.|++++|.++.++. +. .+++|+.|++++|.++.++ .+..+++|+.|+++
T Consensus 69 ~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~--~l~~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l~ 142 (291)
T 1h6t_A 69 NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LK--DLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLG 142 (291)
T ss_dssp TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GT--TCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECC
T ss_pred CCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hc--cCCCCCEEECCCCcCCCCh--hhcCCCCCCEEEcc
Confidence 35789999999998876 223789999999999998765 44 7899999999999999874 58889999999999
Q ss_pred CCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767 113 DNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191 (195)
Q Consensus 113 ~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~ 191 (195)
+|.++.++....+++|+.|++++|.++.+++ +..+++|+.|++++|.++++. .+..+++|+.|++++|+++..+.
T Consensus 143 ~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 143 NNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp SSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEECCCE
T ss_pred CCcCCcchhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccCCcc
Confidence 9999988443338999999999999998876 788999999999999999974 38899999999999999877654
No 93
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=2.4e-17 Score=135.35 Aligned_cols=153 Identities=17% Similarity=0.221 Sum_probs=106.6
Q ss_pred CCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccC
Q psy14767 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101 (195)
Q Consensus 22 ~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~ 101 (195)
.||..|.|.... ...++|+++.++.+|..++++++.|++++|.++.++. .+++|+.|++++|.++.++.
T Consensus 30 ~~~~~~~c~~~~-l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l~~lp~---- 98 (622)
T 3g06_A 30 VVQKMRACLNNG-NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSLPV---- 98 (622)
T ss_dssp HHHHHHHHHHHC-CCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC------CCTTCCEEEECSCCCSCCCC----
T ss_pred cCcccccccCCC-CcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC------cCCCCCEEEcCCCcCCcCCC----
Confidence 355667776432 5789999999999999999999999999999998776 24689999999999988765
Q ss_pred CCCCccEEEcCCCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccc--cc---------
Q psy14767 102 GVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE--AF--------- 170 (195)
Q Consensus 102 ~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~--------- 170 (195)
.+++|+.|++++|.++.++. .+++|+.|++++|.++.++. .+++|++|++++|++++++.. .+
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~ 172 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQ 172 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcCCccCCCCEEECCCCC
Confidence 56788888888888887766 34556666666666665543 124555555555555543210 01
Q ss_pred -----cCCCCCcEEEcCCCCCCCCCC
Q psy14767 171 -----YGIDKIDTLKLNGNKLASLKP 191 (195)
Q Consensus 171 -----~~l~~l~~l~l~~n~l~~~~~ 191 (195)
..+++|+.|++++|.+++++.
T Consensus 173 l~~l~~~~~~L~~L~Ls~N~l~~l~~ 198 (622)
T 3g06_A 173 LTSLPMLPSGLQELSVSDNQLASLPT 198 (622)
T ss_dssp CSCCCCCCTTCCEEECCSSCCSCCCC
T ss_pred CCCCcccCCCCcEEECCCCCCCCCCC
Confidence 112556666666666666543
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=125.79 Aligned_cols=149 Identities=17% Similarity=0.151 Sum_probs=73.9
Q ss_pred eEEEecCCCcee-eCCCC----CCceeEEEeecCCccccch----hhhhccCCCCccEEEeecCCcceecccccCCCCCc
Q psy14767 36 RTVECIDRNFYT-IPEGI----DLDTQVLDLSSNNINVLQK----EIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106 (195)
Q Consensus 36 ~~~~c~~~~l~~-~p~~~----~~~l~~L~l~~n~i~~~~~----~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l 106 (195)
+.++.+++.+.. .|..+ .++++.|++++|.++...+ ..+. .+++|++|++++|.++.+++..|..+++|
T Consensus 94 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 94 KELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW--LKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT--BCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred eEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh--hccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 445555555543 23332 2355555666655553211 1121 34555666666666555555555555555
Q ss_pred cEEEcCCCCC----------------------------CcccCc---cc--ccccCeeecCCCcccccCCCcCCCC---C
Q psy14767 107 DELDLSDNLL----------------------------STVPSL---IY--IPYLKSINLAHNPIHQISSYSFQST---P 150 (195)
Q Consensus 107 ~~l~l~~n~l----------------------------~~~~~~---~~--~~~l~~l~l~~n~~~~~~~~~~~~~---~ 150 (195)
+.|++++|++ +.++.. .+ +++|++|++++|.++...+..+..+ +
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 5555555554 322221 11 3455555555555555433233333 4
Q ss_pred CCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCC
Q psy14767 151 GIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189 (195)
Q Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~ 189 (195)
+|++|++++|+++.++... . ++|+.|++++|+++++
T Consensus 252 ~L~~L~Ls~N~l~~lp~~~-~--~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 252 ALNSLNLSFAGLEQVPKGL-P--AKLRVLDLSSNRLNRA 287 (310)
T ss_dssp TCCCEECCSSCCCSCCSCC-C--SCCSCEECCSCCCCSC
T ss_pred cCCEEECCCCCCCchhhhh-c--CCCCEEECCCCcCCCC
Confidence 5666666666666553322 1 4566666666666654
No 95
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.71 E-value=8.6e-17 Score=123.39 Aligned_cols=148 Identities=17% Similarity=0.244 Sum_probs=103.6
Q ss_pred eEEEecCCCceeeCC-CCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCC
Q psy14767 36 RTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114 (195)
Q Consensus 36 ~~~~c~~~~l~~~p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n 114 (195)
+.++.+++.+..++. ...+.++.+++++|.+..+.+ +. .+++|+.|++++|.++.+++ +..+++|+.+++++|
T Consensus 180 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~--~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 180 YSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VA--NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN 253 (347)
T ss_dssp SEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GG--GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEccCCcccccccccCCCccceeecccCCCCCCch--hh--cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCC
Confidence 445555555544443 112455556666665555444 33 45678888888887777655 677788888888888
Q ss_pred CCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767 115 LLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191 (195)
Q Consensus 115 ~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~ 191 (195)
.++.++....+++|+.|++++|.++.++ .+..+++|+.|++++|++++..+..+..+++|+.|++++|+++++++
T Consensus 254 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 254 QISDINAVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CCCCCGGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred ccCCChhHhcCCCcCEEEccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 8777654333778888888888887763 46677888888888888888777778888888888888888888765
No 96
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.71 E-value=2.2e-16 Score=130.41 Aligned_cols=135 Identities=16% Similarity=0.287 Sum_probs=79.7
Q ss_pred ceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCC-------CccEEEcCCCCCCcccCccc---
Q psy14767 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT-------NMDELDLSDNLLSTVPSLIY--- 124 (195)
Q Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~-------~l~~l~l~~n~l~~~~~~~~--- 124 (195)
+++.|++++|.++.++...+. .+++|+.|++++|.++.++...+.... +|+.|++++|.++.+|...+
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~--~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~ 511 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFS--TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHH--TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTT
T ss_pred CCCEEECcCCccCcCCHHHHc--cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhcc
Confidence 556666666666665555554 455666666666666655554443332 56666666666666555442
Q ss_pred ccccCeeecCCCcccccCCCcCCCCCCCCEEec------CCCcceeeccccccCCCCCcEEEcCCCCCCCCCCC
Q psy14767 125 IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDM------SNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPR 192 (195)
Q Consensus 125 ~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l------~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~ 192 (195)
+++|+.|++++|+++.++. .+..+++|+.|++ ++|++.+..+..+..+++|+.|++++|+++.+|..
T Consensus 512 l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~ 584 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSKFPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK 584 (636)
T ss_dssp CTTCCEEECCSSCCSSCCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC
T ss_pred CCCcCEEECCCCCCCCcCh-hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHh
Confidence 5566666666666666433 4445666666666 33455555555666666777777777777655543
No 97
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.70 E-value=1.3e-16 Score=131.76 Aligned_cols=157 Identities=18% Similarity=0.239 Sum_probs=87.5
Q ss_pred eEEEecCCCceeeCCCCC----CceeEEEeecCCccccchhhhh-----ccCCCCccEEEeecCCcceecccccCCCCCc
Q psy14767 36 RTVECIDRNFYTIPEGID----LDTQVLDLSSNNINVLQKEIFL-----QMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106 (195)
Q Consensus 36 ~~~~c~~~~l~~~p~~~~----~~l~~L~l~~n~i~~~~~~~~~-----~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l 106 (195)
+.++.+++.++.+|..+. ++++.|++++|.++...+..+. .+.+++|+.|++++|.++.+++..+..+++|
T Consensus 380 ~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L 459 (636)
T 4eco_A 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459 (636)
T ss_dssp CEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCC
T ss_pred cEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCC
Confidence 444555555555554332 1455555555555443332221 0023456666666666666555555556666
Q ss_pred cEEEcCCCCCCcccCccc--cc-------ccCeeecCCCcccccCCCcC-CCCCCCCEEecCCCcceeeccccccCCCCC
Q psy14767 107 DELDLSDNLLSTVPSLIY--IP-------YLKSINLAHNPIHQISSYSF-QSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176 (195)
Q Consensus 107 ~~l~l~~n~l~~~~~~~~--~~-------~l~~l~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l 176 (195)
+.|++++|.++.+|...+ .. +|+.|++++|.++.++...+ ..+++|+.|++++|+++++ +..+..+++|
T Consensus 460 ~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L 538 (636)
T 4eco_A 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF-PTQPLNSSTL 538 (636)
T ss_dssp SEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSC-CCGGGGCSSC
T ss_pred CEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCc-ChhhhcCCCC
Confidence 666666666666665554 21 66677777777666554322 2566777777777777664 4445566777
Q ss_pred cEEEc------CCCCCCCCCCCC
Q psy14767 177 DTLKL------NGNKLASLKPRT 193 (195)
Q Consensus 177 ~~l~l------~~n~l~~~~~~~ 193 (195)
+.|++ ++|++.+..|..
T Consensus 539 ~~L~Ls~N~~ls~N~l~~~~p~~ 561 (636)
T 4eco_A 539 KGFGIRNQRDAQGNRTLREWPEG 561 (636)
T ss_dssp CEEECCSCBCTTCCBCCCCCCTT
T ss_pred CEEECCCCcccccCcccccChHH
Confidence 77777 345555555543
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.70 E-value=1.6e-16 Score=129.23 Aligned_cols=137 Identities=12% Similarity=0.251 Sum_probs=86.4
Q ss_pred CceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCC
Q psy14767 34 GKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113 (195)
Q Consensus 34 ~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~ 113 (195)
..+.++++++.++.+| ...++++.|++++|.++.++. +. + +|+.|++++|.++.+++ .+++|+.|++++
T Consensus 81 ~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~--l~--~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 81 QITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE--LP--A--SLKHLDVDNNQLTMLPE----LPALLEYINADN 149 (571)
T ss_dssp TCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC--CC--T--TCCEEECCSSCCSCCCC----CCTTCCEEECCS
T ss_pred CCCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch--hh--c--CCCEEECCCCcCCCCCC----cCccccEEeCCC
Confidence 3577888888888888 667888888888888888766 43 2 67777777777777654 356667777777
Q ss_pred CCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCC-------cEEEcCCCCC
Q psy14767 114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI-------DTLKLNGNKL 186 (195)
Q Consensus 114 n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l-------~~l~l~~n~l 186 (195)
|.++.+|. .+++|+.|++++|.++.++. +. ++|+.|++++|+|+.++. +.. +| +.|++++|++
T Consensus 150 N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 150 NQLTMLPE--LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC--CC----------CCEEEECCSSCC
T ss_pred CccCcCCC--cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecCCCcc
Confidence 77666555 34556666666666655544 32 455555555555554433 222 33 5555555555
Q ss_pred CCCCC
Q psy14767 187 ASLKP 191 (195)
Q Consensus 187 ~~~~~ 191 (195)
+.+|+
T Consensus 220 ~~lp~ 224 (571)
T 3cvr_A 220 THIPE 224 (571)
T ss_dssp CCCCG
T ss_pred eecCH
Confidence 55443
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1e-16 Score=131.35 Aligned_cols=146 Identities=16% Similarity=0.228 Sum_probs=74.6
Q ss_pred eEEEecCCCceeeCC-CCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCC
Q psy14767 36 RTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114 (195)
Q Consensus 36 ~~~~c~~~~l~~~p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n 114 (195)
+.++++++.+..+|. .-.++++.|+|++|.++.++ .+. .+++|+.|++++|.+..++ .+..+++|+.|++++|
T Consensus 68 ~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~--~l~--~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 68 TKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS--SLK--DLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNN 141 (605)
T ss_dssp CEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT--TST--TCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSS
T ss_pred CEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh--hhc--cCCCCCEEEecCCCCCCCc--cccCCCccCEEECCCC
Confidence 344444444444433 11134555555555554433 122 3455555555555555442 2445555555555555
Q ss_pred CCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767 115 LLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191 (195)
Q Consensus 115 ~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~ 191 (195)
.++.++....+++|+.|++++|.++.+++ +..+++|+.|+|++|++++++ .+..+++|+.|++++|++++.|.
T Consensus 142 ~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 142 KITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CCCCCGGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCC
T ss_pred ccCCchhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCcc
Confidence 55554222225555666666665555544 555566666666666665542 35556666666666666555443
No 100
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.70 E-value=1.3e-16 Score=122.38 Aligned_cols=146 Identities=14% Similarity=0.206 Sum_probs=124.2
Q ss_pred ceEEEecCCCceeeCC-CCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCC
Q psy14767 35 KRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~ 113 (195)
-+.+++.++.+..++. ...++++.|++++|.++.+++ +. .+++|+.|++++|.++.++ .+..+++|+.+++++
T Consensus 201 L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~ 274 (347)
T 4fmz_A 201 LHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LA--NLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGS 274 (347)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCS
T ss_pred cceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hh--cCCCCCEEECCCCccCCCh--hHhcCCCcCEEEccC
Confidence 5678888888887664 233789999999999998877 44 7899999999999999873 588899999999999
Q ss_pred CCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCC
Q psy14767 114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188 (195)
Q Consensus 114 n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~ 188 (195)
|.++.++....+++|+.|++++|.++...+..+..+++|++|++++|+++++.+ +..+++|+.|++++|+++.
T Consensus 275 n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 275 NQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347 (347)
T ss_dssp SCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC----
T ss_pred CccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcccC
Confidence 999988654448999999999999998888788889999999999999999866 7889999999999999863
No 101
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.69 E-value=7e-17 Score=112.64 Aligned_cols=128 Identities=14% Similarity=0.265 Sum_probs=105.6
Q ss_pred CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCee
Q psy14767 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI 131 (195)
Q Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l 131 (195)
.+++.|++++|.++.++. ... ..++|+.|++++|.++.+ ..+..+++|+.|++++|.++.++...+ +++|+.|
T Consensus 19 ~~L~~L~l~~n~l~~i~~-~~~--~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN-LGA--TLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TSCEEEECTTSCCCSCCC-GGG--GTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCceEEEeeCCCCchhHH-hhh--cCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 578999999999998743 222 234899999999999988 468889999999999999998887664 8899999
Q ss_pred ecCCCcccccCC-CcCCCCCCCCEEecCCCcceeeccc---cccCCCCCcEEEcCCCCC
Q psy14767 132 NLAHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTIYSE---AFYGIDKIDTLKLNGNKL 186 (195)
Q Consensus 132 ~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~l~~l~l~~n~l 186 (195)
++++|.++.++. ..+..+++|+.|++++|.++.++.. .+..+++|+.|++++|..
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 999999988765 4677889999999999999877543 578889999999988864
No 102
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=5.6e-16 Score=131.40 Aligned_cols=135 Identities=14% Similarity=0.273 Sum_probs=85.0
Q ss_pred ceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCC-------CCccEEEcCCCCCCcccCccc---
Q psy14767 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV-------TNMDELDLSDNLLSTVPSLIY--- 124 (195)
Q Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l-------~~l~~l~l~~n~l~~~~~~~~--- 124 (195)
+++.|++++|.++.++...+. .+++|+.|++++|.++.++...+... ++|+.|++++|.++.+|...+
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~--~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~ 751 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFA--TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHH--TTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTT
T ss_pred CcCEEEccCCcCCccCHHHHc--cCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhcc
Confidence 566666666666666665554 45667777777777666655444332 266777777777766665542
Q ss_pred ccccCeeecCCCcccccCCCcCCCCCCCCEEecCC------CcceeeccccccCCCCCcEEEcCCCCCCCCCCC
Q psy14767 125 IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN------CQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPR 192 (195)
Q Consensus 125 ~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~------n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~ 192 (195)
+++|+.|++++|.++.++. .+..+++|+.|++++ |++.+..+..+..+++|+.|++++|+++.+|..
T Consensus 752 l~~L~~L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~ 824 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSSFPT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK 824 (876)
T ss_dssp CTTCCEEECCSSCCSSCCC-GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC
T ss_pred CCCcCEEEeCCCCCCccch-hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHh
Confidence 5667777777777666533 445666777777755 555555566666777777777777777655553
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=2.8e-16 Score=111.54 Aligned_cols=129 Identities=14% Similarity=0.227 Sum_probs=111.0
Q ss_pred CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcc-cCccc-ccccCee
Q psy14767 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV-PSLIY-IPYLKSI 131 (195)
Q Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~-~~~~~-~~~l~~l 131 (195)
++++.|++++|.++.++. +. .+++|+.|++++|.++.++ .+..+++|+.|++++|.++.. +.... +++|+.|
T Consensus 44 ~~L~~L~l~~n~i~~l~~--l~--~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTG--IE--YAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HTCCEEEEESSCCSCCTT--GG--GCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred CCccEEeccCCCccChHH--Hh--cCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 579999999999998773 44 6789999999999887764 688899999999999999863 33333 8999999
Q ss_pred ecCCCcccccCCCcCCCCCCCCEEecCCCc-ceeeccccccCCCCCcEEEcCCCCCCCCC
Q psy14767 132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYGIDKIDTLKLNGNKLASLK 190 (195)
Q Consensus 132 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~l~~l~l~~n~l~~~~ 190 (195)
++++|.++...+..+..+++|++|++++|. ++.++ .+..+++|+.|++++|++++++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH
Confidence 999999998666678899999999999998 88874 5889999999999999999875
No 104
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=6.5e-17 Score=122.50 Aligned_cols=148 Identities=21% Similarity=0.155 Sum_probs=107.2
Q ss_pred ceEEEecCCCceeeCCCC---CCceeEEEeecCCccc---cchhh-hhccCCCCccEEEeecCCcceeccc---ccCCCC
Q psy14767 35 KRTVECIDRNFYTIPEGI---DLDTQVLDLSSNNINV---LQKEI-FLQMGITNIQKLYLRKCKLEFVDDR---AFRGVT 104 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~---~~~l~~L~l~~n~i~~---~~~~~-~~~~~l~~L~~l~l~~n~i~~~~~~---~~~~l~ 104 (195)
-+.++.+++.+..+|... .++++.|++++|.+.. ++... +. .+++|++|++++|.++.+++. .+..++
T Consensus 147 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 147 LKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH--KFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp CCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT--SSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred CCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh--cCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 355666666666655432 2567777777776653 22222 12 456777777777777655432 245678
Q ss_pred CccEEEcCCCCCCcc-cCccc----ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEE
Q psy14767 105 NMDELDLSDNLLSTV-PSLIY----IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTL 179 (195)
Q Consensus 105 ~l~~l~l~~n~l~~~-~~~~~----~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l 179 (195)
+|+.|++++|+++.. |.... .++|+.|++++|+++.++...+ ++|++|++++|++++++. +..+++|+.|
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L 299 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNRAPQ--PDELPEVDNL 299 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCSCCC--TTSCCCCSCE
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCCCch--hhhCCCccEE
Confidence 999999999999976 54443 3799999999999998876432 799999999999998743 6788999999
Q ss_pred EcCCCCCCCC
Q psy14767 180 KLNGNKLASL 189 (195)
Q Consensus 180 ~l~~n~l~~~ 189 (195)
++++|++++.
T Consensus 300 ~L~~N~l~~~ 309 (310)
T 4glp_A 300 TLDGNPFLVP 309 (310)
T ss_dssp ECSSTTTSCC
T ss_pred ECcCCCCCCC
Confidence 9999999863
No 105
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.68 E-value=2.6e-16 Score=133.76 Aligned_cols=156 Identities=24% Similarity=0.279 Sum_probs=128.0
Q ss_pred CceEEEecCCCceeeCC-CCC--CceeEEEeecC-CccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEE
Q psy14767 34 GKRTVECIDRNFYTIPE-GID--LDTQVLDLSSN-NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDEL 109 (195)
Q Consensus 34 ~~~~~~c~~~~l~~~p~-~~~--~~l~~L~l~~n-~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l 109 (195)
..+.++.+++.++.++. .+. ++++.|++++| .+..+++..|. ++++|+.|++++|.++.+.+.+|.++++|+.|
T Consensus 25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~--~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR--NLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS--SCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc--CCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 35789999999998754 443 68999999999 45567788887 88999999999999999999999999999999
Q ss_pred EcCCCCCCc-ccCc-cc--ccccCeeecCCCcccccCC-CcCCCCCCCCEEecCCCcceeeccccccCC--CCCcEEEcC
Q psy14767 110 DLSDNLLST-VPSL-IY--IPYLKSINLAHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTIYSEAFYGI--DKIDTLKLN 182 (195)
Q Consensus 110 ~l~~n~l~~-~~~~-~~--~~~l~~l~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~l~~l~l~ 182 (195)
++++|.++. ++.. .+ +++|++|++++|.++.+.+ ..+..+++|++|++++|.++++.+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 999999985 3443 23 8999999999999988764 468899999999999999988776666655 566667777
Q ss_pred CCCCCCCCC
Q psy14767 183 GNKLASLKP 191 (195)
Q Consensus 183 ~n~l~~~~~ 191 (195)
+|.+++..+
T Consensus 183 ~n~l~~~~~ 191 (844)
T 3j0a_A 183 ANSLYSRVS 191 (844)
T ss_dssp CSBSCCCCC
T ss_pred CCccccccc
Confidence 666665444
No 106
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.68 E-value=1.4e-16 Score=122.29 Aligned_cols=110 Identities=22% Similarity=0.366 Sum_probs=99.5
Q ss_pred CCCCC-eecccCCceEEEecCC-CceeeCCCCC--CceeEEEeec-CCccccchhhhhccCCCCccEEEeecCCcceecc
Q psy14767 23 CPLGC-SCKWKAGKRTVECIDR-NFYTIPEGID--LDTQVLDLSS-NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97 (195)
Q Consensus 23 c~~~c-~c~~~~~~~~~~c~~~-~l~~~p~~~~--~~l~~L~l~~-n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~ 97 (195)
||..| .|. ...++|+++ +++.+|. ++ .+++.|+|++ |.++.+++..|. ++++|+.|++++|.|+.+++
T Consensus 1 cp~~c~~C~----~~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~ 73 (347)
T 2ifg_A 1 CPDACCPHG----SSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLR--GLGELRNLTIVKSGLRFVAP 73 (347)
T ss_dssp CCSSSCCSS----SSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSC--SCCCCSEEECCSSCCCEECT
T ss_pred CCCcCcccc----CCEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhc--cccCCCEEECCCCccceeCH
Confidence 89999 998 367899998 9999999 76 4699999996 999999998887 88999999999999999999
Q ss_pred cccCCCCCccEEEcCCCCCCcccCccc-ccccCeeecCCCccc
Q psy14767 98 RAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIH 139 (195)
Q Consensus 98 ~~~~~l~~l~~l~l~~n~l~~~~~~~~-~~~l~~l~l~~n~~~ 139 (195)
.+|.++++|+.|+|++|.++.++...+ ...|+.|++.+|.+.
T Consensus 74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp TGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred HHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence 999999999999999999999998877 444999999999876
No 107
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=3.3e-17 Score=111.17 Aligned_cols=126 Identities=21% Similarity=0.303 Sum_probs=105.3
Q ss_pred CCceeEEEeecCCcc--ccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCc-ccCccc-cccc
Q psy14767 53 DLDTQVLDLSSNNIN--VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST-VPSLIY-IPYL 128 (195)
Q Consensus 53 ~~~l~~L~l~~n~i~--~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~-~~~~~~-~~~l 128 (195)
+++++.|++++|.++ .++. .+. .+++|+.|++++|.++.+ ..+..+++|+.|++++|.++. ++.... +++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~-~~~--~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEG-LTD--EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCS-CCT--TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CccCeEEEccCCcCChhHHHH-HHh--hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 357899999999998 5554 444 678999999999999988 578889999999999999997 555444 8899
Q ss_pred CeeecCCCcccccC-CCcCCCCCCCCEEecCCCcceeecc---ccccCCCCCcEEEcCC
Q psy14767 129 KSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYS---EAFYGIDKIDTLKLNG 183 (195)
Q Consensus 129 ~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~l~~l~l~~ 183 (195)
+.|++++|.++.++ +..+..+++|++|++++|.++++++ ..+..+++|+.|++++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999998875 2567888999999999999998876 5788899999998864
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=3.8e-16 Score=128.02 Aligned_cols=146 Identities=19% Similarity=0.347 Sum_probs=127.4
Q ss_pred ceEEEecCCCceeeCC-CCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCC
Q psy14767 35 KRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~ 113 (195)
.+.+++.++.+..+|. .-.++++.|+|++|.++.+++ +. .+++|+.|++++|.++.++ .+..+++|+.|++++
T Consensus 45 L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~--~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 45 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LT--NLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEH 118 (605)
T ss_dssp CCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GG--GCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTT
T ss_pred CCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hc--cCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecC
Confidence 4678888888888774 223799999999999999877 44 7899999999999999875 688999999999999
Q ss_pred CCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCC
Q psy14767 114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLK 190 (195)
Q Consensus 114 n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~ 190 (195)
|.++.++....+++|+.|++++|.++.+ ..+..+++|+.|+|++|.++++.+ +..+++|+.|++++|++++++
T Consensus 119 N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 119 NGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp SCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred CCCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh
Confidence 9999876544489999999999999988 367889999999999999999866 889999999999999999874
No 109
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.65 E-value=1.4e-15 Score=105.56 Aligned_cols=106 Identities=22% Similarity=0.346 Sum_probs=92.1
Q ss_pred eeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeec
Q psy14767 56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL 133 (195)
Q Consensus 56 l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l 133 (195)
.+.+++++|.++.++.... ++++.|++++|.++.+++..|.++++|+.|++++|+++.++...+ +++|+.|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~-----~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP-----TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCccCccCC-----CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 4578999999999876542 578999999999999988889999999999999999998888776 889999999
Q ss_pred CCCcccccCCCcCCCCCCCCEEecCCCcceeec
Q psy14767 134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166 (195)
Q Consensus 134 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 166 (195)
++|+++.+++..|..+++|++|++++|.++...
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999999988888888899999999999887553
No 110
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.65 E-value=2e-15 Score=120.27 Aligned_cols=127 Identities=20% Similarity=0.321 Sum_probs=70.8
Q ss_pred ceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCcccccccCeeecC
Q psy14767 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLA 134 (195)
Q Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~ 134 (195)
+++.|++++|.++.+++ +. .+++|+.|++++|.++.+++ +..+++|+.|++++|.++.++....+++|+.|+++
T Consensus 266 ~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 266 KLTELKLGANQISNISP--LA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY 339 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GT--TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCccCcccc--cc--CCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECC
Confidence 44444444444444433 22 34455555555555554433 44455555555555555544442225566666666
Q ss_pred CCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767 135 HNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191 (195)
Q Consensus 135 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~ 191 (195)
+|.+++++ .+..+++|+.|++++|++++..+ +..+++|+.|++++|+++++|.
T Consensus 340 ~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p~ 392 (466)
T 1o6v_A 340 NNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPV 392 (466)
T ss_dssp SSCCCCCG--GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCCB
T ss_pred CCccCCch--hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCch
Confidence 66665552 45566667777777777666654 5666677777777777666543
No 111
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=4.3e-16 Score=132.12 Aligned_cols=151 Identities=15% Similarity=0.216 Sum_probs=106.1
Q ss_pred ceEEEecCCCcee------------------eCCCCC----CceeEEEeecCCccccchhhhhccCCCCccEEEeecCC-
Q psy14767 35 KRTVECIDRNFYT------------------IPEGID----LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK- 91 (195)
Q Consensus 35 ~~~~~c~~~~l~~------------------~p~~~~----~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~- 91 (195)
-+.++.+++.+.. +|..+. ++++.|++++|.+....+..+. .+++|+.|++++|.
T Consensus 450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~--~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY--DLPELQSLNIACNRG 527 (876)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG--GCSSCCEEECTTCTT
T ss_pred CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh--CCCCCCEEECcCCCC
Confidence 5678888888887 888764 6889999999887765555555 67788888888887
Q ss_pred cce-eccccc-------CCCCCccEEEcCCCCCCcccC--ccc-ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCC
Q psy14767 92 LEF-VDDRAF-------RGVTNMDELDLSDNLLSTVPS--LIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNC 160 (195)
Q Consensus 92 i~~-~~~~~~-------~~l~~l~~l~l~~n~l~~~~~--~~~-~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 160 (195)
++. ..|..+ ..+++|+.|++++|.++.+|. ... +++|+.|++++|.++.++ .+..+++|+.|++++|
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYN 605 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSS
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCC
Confidence 665 223323 334477788888887777776 333 777777777777777555 5667777777777777
Q ss_pred cceeeccccccCCCC-CcEEEcCCCCCCCCC
Q psy14767 161 QIHTIYSEAFYGIDK-IDTLKLNGNKLASLK 190 (195)
Q Consensus 161 ~l~~~~~~~~~~l~~-l~~l~l~~n~l~~~~ 190 (195)
+++.+ +..+..+++ |+.|++++|+++.+|
T Consensus 606 ~l~~l-p~~l~~l~~~L~~L~Ls~N~L~~lp 635 (876)
T 4ecn_A 606 QIEEI-PEDFCAFTDQVEGLGFSHNKLKYIP 635 (876)
T ss_dssp CCSCC-CTTSCEECTTCCEEECCSSCCCSCC
T ss_pred ccccc-hHHHhhccccCCEEECcCCCCCcCc
Confidence 77744 334666666 777777777776554
No 112
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.65 E-value=2e-15 Score=120.31 Aligned_cols=127 Identities=23% Similarity=0.395 Sum_probs=74.9
Q ss_pred ceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCcccccccCeeecC
Q psy14767 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLA 134 (195)
Q Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~ 134 (195)
+++.|++++|.++.+++ +. .+++|+.|++++|.++.+++ +..+++|+.|++++|.++.++....+++|+.|+++
T Consensus 244 ~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAP--LS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 317 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GT--TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECC
T ss_pred CCCEEECCCCccccchh--hh--cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECc
Confidence 44444455444444433 22 34555555555555555443 45555666666666665555442225666666666
Q ss_pred CCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767 135 HNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191 (195)
Q Consensus 135 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~ 191 (195)
+|.++++.+ +..+++|+.|++++|+++++ ..+..+++|+.|++++|++++++|
T Consensus 318 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 318 FNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp SSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred CCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 666665544 45566777777777777665 246677777777777777776654
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=1.1e-16 Score=133.79 Aligned_cols=116 Identities=20% Similarity=0.259 Sum_probs=78.1
Q ss_pred hhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc-ccccCeeecCCCcccccCCCcCCCC
Q psy14767 71 KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQST 149 (195)
Q Consensus 71 ~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~-~~~l~~l~l~~n~~~~~~~~~~~~~ 149 (195)
+..+. .++.|+.|++++|.+..+++..+ .+++|+.|+|++|.++.+|.... +++|+.|++++|.++.++. .+..+
T Consensus 217 ~~~~~--~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l 292 (727)
T 4b8c_D 217 KDSKY--DDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA-ELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCS-SGGGG
T ss_pred hhhhc--cCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccCh-hhcCC
Confidence 44444 56677777777777776655433 67777777777777777765544 7777777777777776643 56667
Q ss_pred CCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767 150 PGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191 (195)
Q Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~ 191 (195)
++|++|+|++|.++.++.. ++.+++|+.|++++|++++.++
T Consensus 293 ~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp TTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHHH
T ss_pred CCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCCCh
Confidence 7777777777777766443 7777777777777777776554
No 114
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.63 E-value=1e-14 Score=116.01 Aligned_cols=148 Identities=16% Similarity=0.172 Sum_probs=98.0
Q ss_pred ceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccc----------------
Q psy14767 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR---------------- 98 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~---------------- 98 (195)
-+.++++++.++.+|-.-.++++.|++++|.++.++ +. .+++|++|++++|.++.++-.
T Consensus 87 L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~---~~--~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~ 161 (457)
T 3bz5_A 87 LTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLD---VS--QNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKI 161 (457)
T ss_dssp CSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCCC---CT--TCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCC
T ss_pred CCEEECcCCCCceeecCCCCcCCEEECCCCcCCeec---CC--CCCcCCEEECCCCccceeccccCCcCCEEECCCCCcc
Confidence 466777777777766433467777777777777653 33 556777777777776654210
Q ss_pred ---ccCCCCCccEEEcCCCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCC
Q psy14767 99 ---AFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK 175 (195)
Q Consensus 99 ---~~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 175 (195)
.+..+++|+.|++++|.++.++ ...+++|+.|++++|.++.++ +..+++|+.|++++|++++++ +..+++
T Consensus 162 ~~~~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~ip---~~~l~~ 234 (457)
T 3bz5_A 162 TKLDVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID---VTPLTQ 234 (457)
T ss_dssp CCCCCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTT
T ss_pred cccccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCcccccC---ccccCC
Confidence 2344455666666666666554 112566777777777776652 566778888888888888864 667788
Q ss_pred CcEEEcCCCCCCCCCCCCC
Q psy14767 176 IDTLKLNGNKLASLKPRTW 194 (195)
Q Consensus 176 l~~l~l~~n~l~~~~~~~~ 194 (195)
|+.|++++|+++++++..+
T Consensus 235 L~~L~l~~N~l~~~~~~~l 253 (457)
T 3bz5_A 235 LTYFDCSVNPLTELDVSTL 253 (457)
T ss_dssp CSEEECCSSCCSCCCCTTC
T ss_pred CCEEEeeCCcCCCcCHHHC
Confidence 8888888888888776543
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=3.2e-15 Score=114.10 Aligned_cols=91 Identities=24% Similarity=0.462 Sum_probs=79.2
Q ss_pred CCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCC-EEecCCCcceeeccccccCCCCCcEE
Q psy14767 103 VTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIR-YIDMSNCQIHTIYSEAFYGIDKIDTL 179 (195)
Q Consensus 103 l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~l~~l 179 (195)
+++|+.+++++|.++.++..+| +.+|+.+.+.+| ++.++..+|.++++|+ .+++.+ .++.+.+.+|.++.+|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 4678888888888888888888 778999999887 8888888999999998 999988 7888888899999999999
Q ss_pred EcCCCCCCCCCCCCCC
Q psy14767 180 KLNGNKLASLKPRTWS 195 (195)
Q Consensus 180 ~l~~n~l~~~~~~~~~ 195 (195)
++++|.++.+++.+|.
T Consensus 303 ~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 303 LATGDKITTLGDELFG 318 (329)
T ss_dssp EECSSCCCEECTTTTC
T ss_pred EeCCCccCccchhhhc
Confidence 9999999999888774
No 116
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.63 E-value=3.1e-15 Score=104.12 Aligned_cols=105 Identities=17% Similarity=0.324 Sum_probs=93.1
Q ss_pred eEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecC
Q psy14767 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLA 134 (195)
Q Consensus 57 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~ 134 (195)
+.+++++|.++.++.... ++|+.|++++|.++.+++..|.++++|+.|++++|+++.++...+ +++|+.|+++
T Consensus 15 ~~l~~~~n~l~~iP~~~~-----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-----TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCCccCCCcC-----CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 578999999998887542 679999999999999998899999999999999999999988775 8899999999
Q ss_pred CCcccccCCCcCCCCCCCCEEecCCCcceeec
Q psy14767 135 HNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166 (195)
Q Consensus 135 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 166 (195)
+|.++.+++..+..+++|++|++++|.+....
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 99999998877888999999999999987554
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.1e-15 Score=105.63 Aligned_cols=129 Identities=17% Similarity=0.194 Sum_probs=111.0
Q ss_pred ceEEEecCCCce--eeCCCCC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEE
Q psy14767 35 KRTVECIDRNFY--TIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110 (195)
Q Consensus 35 ~~~~~c~~~~l~--~~p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~ 110 (195)
.+.++.+++.+. .+|..+. ++++.|++++|.++.+ ..+. .+++|+.|++++|.++...+..+..+++|+.|+
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLP--KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCC--CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhc--cCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 578999999998 7887654 6899999999999988 4455 789999999999999986666777799999999
Q ss_pred cCCCCCCcccC--ccc-ccccCeeecCCCcccccCC---CcCCCCCCCCEEecCCCcceeecc
Q psy14767 111 LSDNLLSTVPS--LIY-IPYLKSINLAHNPIHQISS---YSFQSTPGIRYIDMSNCQIHTIYS 167 (195)
Q Consensus 111 l~~n~l~~~~~--~~~-~~~l~~l~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~ 167 (195)
+++|.++.++. ... +++|+.|++++|.++.+++ ..+..+++|++|++++|.+..++.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 99999998764 333 8999999999999998876 578889999999999999887754
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=1.2e-16 Score=133.75 Aligned_cols=134 Identities=19% Similarity=0.237 Sum_probs=110.2
Q ss_pred CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc-ccccCeee
Q psy14767 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSIN 132 (195)
Q Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~-~~~l~~l~ 132 (195)
..++.|+|++|.+..++...+ .+++|+.|++++|.++.++ ..|..+++|+.|+|++|.++.+|.... +++|+.|+
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~---~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIF---KYDFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGG---GCCSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred CCCcEEECCCCCCCCCChhhc---CCCCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 579999999999999988887 6899999999999999765 578999999999999999999988766 89999999
Q ss_pred cCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCC-CCcEEEcCCCCCCCCCCC
Q psy14767 133 LAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGID-KIDTLKLNGNKLASLKPR 192 (195)
Q Consensus 133 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~l~~l~l~~n~l~~~~~~ 192 (195)
+++|.++.++.. |..+++|+.|+|++|.+++..+..+.... ....+++++|.+++..|.
T Consensus 300 L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 300 FFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCCCCCccChh-hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 999999988764 89999999999999999987666553321 112245555555555444
No 119
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.61 E-value=2e-14 Score=114.34 Aligned_cols=144 Identities=18% Similarity=0.240 Sum_probs=74.0
Q ss_pred ceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhcc---------------CCCCccEEEeecCCcceecccc
Q psy14767 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM---------------GITNIQKLYLRKCKLEFVDDRA 99 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~---------------~l~~L~~l~l~~n~i~~~~~~~ 99 (195)
.+.+++++++++.+|. ++++++.|++++|.+++++... ..+ ..++|++|++++|.++.++ .
T Consensus 73 l~~L~l~~~~l~~lp~-~~~~L~~L~l~~n~l~~lp~~~-~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp--~ 148 (454)
T 1jl5_A 73 AHELELNNLGLSSLPE-LPPHLESLVASCNSLTELPELP-QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP--E 148 (454)
T ss_dssp CSEEECTTSCCSCCCS-CCTTCSEEECCSSCCSSCCCCC-TTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC--C
T ss_pred CCEEEecCCccccCCC-CcCCCCEEEccCCcCCcccccc-CCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc--c
Confidence 3667777777777766 4566777777777776654311 000 0024445555555544433 2
Q ss_pred cCCCCCccEEEcCCCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEE
Q psy14767 100 FRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTL 179 (195)
Q Consensus 100 ~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l 179 (195)
|.++++|+.+++++|.++.+|.. ..+|+.|++++|.++.++ .+..+++|++|++++|++++++.. ..+|+.|
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L 220 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDL----PLSLESI 220 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEE
T ss_pred cCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCC----cCcccEE
Confidence 44555555555555555444332 234555555555555443 244555555555555555544221 1355555
Q ss_pred EcCCCCCCCCC
Q psy14767 180 KLNGNKLASLK 190 (195)
Q Consensus 180 ~l~~n~l~~~~ 190 (195)
++++|.++++|
T Consensus 221 ~l~~n~l~~lp 231 (454)
T 1jl5_A 221 VAGNNILEELP 231 (454)
T ss_dssp ECCSSCCSSCC
T ss_pred ECcCCcCCccc
Confidence 55555555444
No 120
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.60 E-value=3.4e-14 Score=112.94 Aligned_cols=140 Identities=15% Similarity=0.256 Sum_probs=83.3
Q ss_pred eEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCC
Q psy14767 36 RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115 (195)
Q Consensus 36 ~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~ 115 (195)
+.++++++.+..+|. .+++++.|++++|.++.++ .+. .+++|++|++++|.++.++.. ..+|+.|++++|.
T Consensus 114 ~~L~l~~n~l~~l~~-~~~~L~~L~L~~n~l~~lp--~~~--~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~ 184 (454)
T 1jl5_A 114 KSLLVDNNNLKALSD-LPPLLEYLGVSNNQLEKLP--ELQ--NSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQ 184 (454)
T ss_dssp CEEECCSSCCSCCCS-CCTTCCEEECCSSCCSSCC--CCT--TCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSC
T ss_pred cEEECCCCccCcccC-CCCCCCEEECcCCCCCCCc--ccC--CCCCCCEEECCCCcCcccCCC----cccccEEECcCCc
Confidence 445555555554443 2357788888888888766 254 678888888888888776432 2467777777777
Q ss_pred CCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCC
Q psy14767 116 LSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLK 190 (195)
Q Consensus 116 l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~ 190 (195)
++.++....+++|+.|++++|.+++++.. .++|++|++++|.++.++ .+..+++|+.|++++|++++++
T Consensus 185 l~~l~~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 185 LEELPELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp CSSCCCCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCC
T ss_pred CCcCccccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCccc
Confidence 77766322266666666666666554431 134555555555555443 1445555555555555555443
No 121
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.59 E-value=5.2e-14 Score=112.00 Aligned_cols=143 Identities=17% Similarity=0.216 Sum_probs=107.2
Q ss_pred CceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCC
Q psy14767 34 GKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113 (195)
Q Consensus 34 ~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~ 113 (195)
.-+.++++++.++.+|-.-.++++.|++++|.++.++ +. .+++|++|++++|.++.++ +..+++|+.|++++
T Consensus 65 ~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~---~~--~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~ 136 (457)
T 3bz5_A 65 GLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD---VT--PLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCAR 136 (457)
T ss_dssp TCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC---CT--TCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTT
T ss_pred CCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee---cC--CCCcCCEEECCCCcCCeec---CCCCCcCCEEECCC
Confidence 3578999999999987555589999999999999874 44 7889999999999999873 78889999999999
Q ss_pred CCCCcccCcc-------------------c--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccC
Q psy14767 114 NLLSTVPSLI-------------------Y--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172 (195)
Q Consensus 114 n~l~~~~~~~-------------------~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 172 (195)
|.++.++... + +++|+.|++++|.++.++ +..+++|+.|++++|+++++ .++.
T Consensus 137 N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~ 210 (457)
T 3bz5_A 137 NTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL---DLNQ 210 (457)
T ss_dssp SCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC---CCTT
T ss_pred CccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCee---cccc
Confidence 9988754110 1 345555555555555543 45556666777777766665 2566
Q ss_pred CCCCcEEEcCCCCCCCCC
Q psy14767 173 IDKIDTLKLNGNKLASLK 190 (195)
Q Consensus 173 l~~l~~l~l~~n~l~~~~ 190 (195)
+++|+.|++++|+++++|
T Consensus 211 l~~L~~L~Ls~N~l~~ip 228 (457)
T 3bz5_A 211 NIQLTFLDCSSNKLTEID 228 (457)
T ss_dssp CTTCSEEECCSSCCSCCC
T ss_pred CCCCCEEECcCCcccccC
Confidence 777888888888887765
No 122
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.59 E-value=5.6e-15 Score=121.39 Aligned_cols=81 Identities=21% Similarity=0.339 Sum_probs=62.2
Q ss_pred CCccEEEcCCCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCC
Q psy14767 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNG 183 (195)
Q Consensus 104 ~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~ 183 (195)
++|+.|++++|.++.+| ..+++|+.|++++|.++.++. .+++|+.|++++|+++.++ ..+..+++|+.|++++
T Consensus 221 ~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp-~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLP-ESLIHLSSETTVNLEG 293 (622)
T ss_dssp TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCC-GGGGGSCTTCEEECCS
T ss_pred CCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCC-HHHhhccccCEEEecC
Confidence 56777777777777766 225778888888888887765 4578888999999888774 5588888999999999
Q ss_pred CCCCCCCC
Q psy14767 184 NKLASLKP 191 (195)
Q Consensus 184 n~l~~~~~ 191 (195)
|++++.++
T Consensus 294 N~l~~~~~ 301 (622)
T 3g06_A 294 NPLSERTL 301 (622)
T ss_dssp CCCCHHHH
T ss_pred CCCCCcCH
Confidence 98876543
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=3.6e-15 Score=101.03 Aligned_cols=113 Identities=14% Similarity=0.212 Sum_probs=95.8
Q ss_pred CCCccEEEeecCCcc-eecccccCCCCCccEEEcCCCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEec
Q psy14767 79 ITNIQKLYLRKCKLE-FVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDM 157 (195)
Q Consensus 79 l~~L~~l~l~~n~i~-~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l 157 (195)
.++++.|++++|.++ ...+..+..+++|+.|++++|.++.+.....+++|+.|++++|.++...+..+..+++|++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 467999999999998 3334578889999999999999998822222899999999999999855556666899999999
Q ss_pred CCCcceeec-cccccCCCCCcEEEcCCCCCCCCCC
Q psy14767 158 SNCQIHTIY-SEAFYGIDKIDTLKLNGNKLASLKP 191 (195)
Q Consensus 158 ~~n~l~~~~-~~~~~~l~~l~~l~l~~n~l~~~~~ 191 (195)
++|++++++ +..+..+++|+.|++++|+++++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 999999874 3678999999999999999998876
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=7.7e-15 Score=102.22 Aligned_cols=112 Identities=18% Similarity=0.265 Sum_probs=96.0
Q ss_pred CCCCccEEEeecCCcceecccccCCCC-CccEEEcCCCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEe
Q psy14767 78 GITNIQKLYLRKCKLEFVDDRAFRGVT-NMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYID 156 (195)
Q Consensus 78 ~l~~L~~l~l~~n~i~~~~~~~~~~l~-~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~ 156 (195)
...+|+.|++++|.++.++ .+..+. +|+.|++++|.++.++....+++|+.|++++|.++.+++..+..+++|++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~--~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp CTTSCEEEECTTSCCCSCC--CGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CcCCceEEEeeCCCCchhH--HhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 5678999999999999874 344554 9999999999999884333389999999999999999877678899999999
Q ss_pred cCCCcceeecc-ccccCCCCCcEEEcCCCCCCCCCC
Q psy14767 157 MSNCQIHTIYS-EAFYGIDKIDTLKLNGNKLASLKP 191 (195)
Q Consensus 157 l~~n~l~~~~~-~~~~~l~~l~~l~l~~n~l~~~~~ 191 (195)
+++|+++.++. ..+..+++|+.|++++|+++.++.
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~ 130 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHh
Confidence 99999988764 468899999999999999988765
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=1.6e-14 Score=110.22 Aligned_cols=68 Identities=18% Similarity=0.352 Sum_probs=59.4
Q ss_pred cccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCc-EEEcCCCCCCCCCCCCCC
Q psy14767 126 PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKID-TLKLNGNKLASLKPRTWS 195 (195)
Q Consensus 126 ~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~-~l~l~~n~l~~~~~~~~~ 195 (195)
++|+.+++.+|+++.++..+|.++++|+.+++.+| ++.+...+|.++.+|+ .+++.+ .++.+++.+|.
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~ 294 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFM 294 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTT
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhh
Confidence 46888888888899999999999999999999988 8888888999999998 999988 78888887773
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=1.2e-14 Score=118.37 Aligned_cols=108 Identities=18% Similarity=0.302 Sum_probs=98.5
Q ss_pred CccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc-ccccCeeecCCCcccccCCCcCCCCCCCCEEecCC
Q psy14767 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN 159 (195)
Q Consensus 81 ~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~-~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 159 (195)
.|+.|++++|.++.++. +..+++|+.|++++|.++.+|.... +++|+.|++++|.+++++ .+..+++|+.|++++
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCC
Confidence 57889999999999853 8899999999999999999987666 899999999999999976 688999999999999
Q ss_pred Ccceeec-cccccCCCCCcEEEcCCCCCCCCCCC
Q psy14767 160 CQIHTIY-SEAFYGIDKIDTLKLNGNKLASLKPR 192 (195)
Q Consensus 160 n~l~~~~-~~~~~~l~~l~~l~l~~n~l~~~~~~ 192 (195)
|+++++. +..++.+++|+.|++++|+++++++.
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 9999997 78899999999999999999998874
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=1.7e-14 Score=117.57 Aligned_cols=122 Identities=19% Similarity=0.278 Sum_probs=105.1
Q ss_pred ceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCcccccccCeeecC
Q psy14767 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLA 134 (195)
Q Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~ 134 (195)
.++.|++++|.++.++. +. .+++|+.|++++|.++.++ ..+..+++|+.|++++|.++.+|....+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~--~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LE--QLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVDGVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GG--GGTTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCCCcC--cc--ccccCcEeecCcccccccc-hhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECC
Confidence 57889999999999875 55 6889999999999999774 5799999999999999999998832239999999999
Q ss_pred CCcccccC-CCcCCCCCCCCEEecCCCcceeeccc---cccCCCCCcEEEc
Q psy14767 135 HNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSE---AFYGIDKIDTLKL 181 (195)
Q Consensus 135 ~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~l~~l~l 181 (195)
+|.++++. +..+..+++|+.|++++|.+++.++. .+..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999996 77889999999999999999988653 2445788998864
No 128
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=1.8e-14 Score=111.34 Aligned_cols=138 Identities=20% Similarity=0.184 Sum_probs=72.6
Q ss_pred CceeEEEeecCCccccchhhhhcc--CC-CCccEEEeecCCcceeccccc----CC-CCCccEEEcCCCCCCcccCccc-
Q psy14767 54 LDTQVLDLSSNNINVLQKEIFLQM--GI-TNIQKLYLRKCKLEFVDDRAF----RG-VTNMDELDLSDNLLSTVPSLIY- 124 (195)
Q Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~~--~l-~~L~~l~l~~n~i~~~~~~~~----~~-l~~l~~l~l~~n~l~~~~~~~~- 124 (195)
++++.|++++|.++......+... .+ ++|+.|++++|.++...+..+ .. ..+|+.|++++|.++.......
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 345555555555554443322200 12 455666666665555443322 22 1356666666666553221111
Q ss_pred -----c-cccCeeecCCCcccccCCCc----CCCC-CCCCEEecCCCcceeec----cccccC-CCCCcEEEcCCCCCCC
Q psy14767 125 -----I-PYLKSINLAHNPIHQISSYS----FQST-PGIRYIDMSNCQIHTIY----SEAFYG-IDKIDTLKLNGNKLAS 188 (195)
Q Consensus 125 -----~-~~l~~l~l~~n~~~~~~~~~----~~~~-~~L~~L~l~~n~l~~~~----~~~~~~-l~~l~~l~l~~n~l~~ 188 (195)
. ++|+.|++++|.++...+.. +... ++|++|++++|.+++.. +..+.. .++|+.|++++|++++
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 2 26677777777666554322 2223 47777777777777632 223333 3578888888888777
Q ss_pred CCC
Q psy14767 189 LKP 191 (195)
Q Consensus 189 ~~~ 191 (195)
.+.
T Consensus 240 ~~~ 242 (362)
T 3goz_A 240 PSL 242 (362)
T ss_dssp CCH
T ss_pred HHH
Confidence 654
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=1.9e-16 Score=112.44 Aligned_cols=140 Identities=15% Similarity=0.224 Sum_probs=108.2
Q ss_pred CceeeCCCCC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccC
Q psy14767 44 NFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS 121 (195)
Q Consensus 44 ~l~~~p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~ 121 (195)
.++.+|..+. ++++.|++++|.++.++ .+. .+++|+.|++++|.++.++. .+..+++|+.|++++|.++.++.
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~--~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l~~ 110 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKIS--SLS--GMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLSG 110 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCC--CHH--HHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCHHH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcccc--ccc--cCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcCCc
Confidence 4555554433 68999999999999876 444 67899999999999987753 55667889999999999998873
Q ss_pred cccccccCeeecCCCcccccCC-CcCCCCCCCCEEecCCCcceeeccc----------cccCCCCCcEEEcCCCCCCCCC
Q psy14767 122 LIYIPYLKSINLAHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTIYSE----------AFYGIDKIDTLKLNGNKLASLK 190 (195)
Q Consensus 122 ~~~~~~l~~l~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~----------~~~~l~~l~~l~l~~n~l~~~~ 190 (195)
...+++|+.|++++|.++.++. ..+..+++|++|++++|.+++..+. .+..+++|+.|| +|+++...
T Consensus 111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~e 188 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVDE 188 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTTT
T ss_pred cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHHH
Confidence 2228899999999999887654 4677889999999999998766443 367888999876 77776543
No 130
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.46 E-value=5.4e-13 Score=102.32 Aligned_cols=103 Identities=21% Similarity=0.389 Sum_probs=92.0
Q ss_pred EEEeecC-CccccchhhhhccCCCCccEEEeec-CCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeec
Q psy14767 58 VLDLSSN-NINVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL 133 (195)
Q Consensus 58 ~L~l~~n-~i~~~~~~~~~~~~l~~L~~l~l~~-n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l 133 (195)
.++.+++ +++.+|. +. .+++|+.|++++ |.++.+++..|.++.+|+.|+|++|+++.++...+ +++|+.|++
T Consensus 12 ~v~~~~~n~l~~ip~--l~--~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LP--GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCCTTTTT--SC--SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred EEEcCCCCCCCccCC--CC--CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 4688888 8999888 55 678999999996 99999999999999999999999999999988776 899999999
Q ss_pred CCCcccccCCCcCCCCCCCCEEecCCCcceee
Q psy14767 134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165 (195)
Q Consensus 134 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 165 (195)
++|+++.+++..+..++ |+.|++++|.+...
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 99999999988887765 99999999998753
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=3.1e-14 Score=109.98 Aligned_cols=155 Identities=19% Similarity=0.263 Sum_probs=106.2
Q ss_pred ceEEEecCCCceeeCC--------CCCCceeEEEeecCCccccchhhhhcc--C-CCCccEEEeecCCcceecccc----
Q psy14767 35 KRTVECIDRNFYTIPE--------GIDLDTQVLDLSSNNINVLQKEIFLQM--G-ITNIQKLYLRKCKLEFVDDRA---- 99 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~--------~~~~~l~~L~l~~n~i~~~~~~~~~~~--~-l~~L~~l~l~~n~i~~~~~~~---- 99 (195)
-+.++.+++.++..+. ..+.+++.|++++|.++......+... . .++|++|++++|.++...+..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 4678888888777653 122378888888888887766555410 1 167888888888887766543
Q ss_pred cCCC-CCccEEEcCCCCCCcccCccc-------ccccCeeecCCCcccccCCC----cCCCCC-CCCEEecCCCcceeec
Q psy14767 100 FRGV-TNMDELDLSDNLLSTVPSLIY-------IPYLKSINLAHNPIHQISSY----SFQSTP-GIRYIDMSNCQIHTIY 166 (195)
Q Consensus 100 ~~~l-~~l~~l~l~~n~l~~~~~~~~-------~~~l~~l~l~~n~~~~~~~~----~~~~~~-~L~~L~l~~n~l~~~~ 166 (195)
+..+ ++|+.|++++|.++..+...+ ..+|+.|++++|.++..... .+...+ +|++|++++|++++..
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence 3334 788888888888876655432 24788888888888753322 223333 7889999999888765
Q ss_pred cc----cccCC-CCCcEEEcCCCCCCCC
Q psy14767 167 SE----AFYGI-DKIDTLKLNGNKLASL 189 (195)
Q Consensus 167 ~~----~~~~l-~~l~~l~l~~n~l~~~ 189 (195)
+. .+... ++|+.|++++|.+++.
T Consensus 184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~ 211 (362)
T 3goz_A 184 CAELAKFLASIPASVTSLDLSANLLGLK 211 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence 53 33444 5889999999988763
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=1.3e-16 Score=113.31 Aligned_cols=129 Identities=22% Similarity=0.325 Sum_probs=106.1
Q ss_pred ceeEEEeecC--CccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc-ccccCee
Q psy14767 55 DTQVLDLSSN--NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSI 131 (195)
Q Consensus 55 ~l~~L~l~~n--~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~-~~~l~~l 131 (195)
.++...+.+. .++.++. .+. .+++|+.|++++|.++.++ .+..+++|+.|++++|.++.++.... +++|+.|
T Consensus 24 ~l~~~~l~~~~~~l~~l~~-~~~--~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L 98 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDA-TLS--TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEEL 98 (198)
T ss_dssp TCSEEECCBCCTTCCCCHH-HHH--HTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEE
T ss_pred chheeEeccccCcHhhhhH-HHh--cCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEE
Confidence 4445555544 5555555 444 6789999999999999975 78889999999999999998887555 7899999
Q ss_pred ecCCCcccccCCCcCCCCCCCCEEecCCCcceeecc-ccccCCCCCcEEEcCCCCCCCCC
Q psy14767 132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS-EAFYGIDKIDTLKLNGNKLASLK 190 (195)
Q Consensus 132 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~l~~l~l~~n~l~~~~ 190 (195)
++++|.++.++ .+..+++|++|++++|++++++. ..+..+++|+.|++++|++++.+
T Consensus 99 ~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 99 WISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp EEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred ECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 99999999876 46778899999999999998754 56889999999999999886553
No 133
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.44 E-value=1.2e-14 Score=110.85 Aligned_cols=103 Identities=20% Similarity=0.168 Sum_probs=59.0
Q ss_pred ceEEEecCCCceeeCCCCC--CceeEEEeecCCcccc-chhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEc
Q psy14767 35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVL-QKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~--~~l~~L~l~~n~i~~~-~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l 111 (195)
.+.+++.++.+...+.... ++++.|++++|.++.. .+..+. .+++|++|++++|.++...+..+..+++|+.|++
T Consensus 72 l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 72 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS--QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT--TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHh--hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 3556666666655444333 5677777777776642 333343 5667777777777766555555666667777777
Q ss_pred CCC-CCCc--ccCccc-ccccCeeecCCC-ccc
Q psy14767 112 SDN-LLST--VPSLIY-IPYLKSINLAHN-PIH 139 (195)
Q Consensus 112 ~~n-~l~~--~~~~~~-~~~l~~l~l~~n-~~~ 139 (195)
++| .++. ++.... +++|+.|++++| .++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence 666 4542 222222 455555555555 443
No 134
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.39 E-value=5.5e-14 Score=109.38 Aligned_cols=92 Identities=17% Similarity=0.287 Sum_probs=44.6
Q ss_pred ccCCCCCccEEEcCCCCCC-----cccCccc-ccccCeeecCCCcccccC----CCcC--CCCCCCCEEecCCCccee--
Q psy14767 99 AFRGVTNMDELDLSDNLLS-----TVPSLIY-IPYLKSINLAHNPIHQIS----SYSF--QSTPGIRYIDMSNCQIHT-- 164 (195)
Q Consensus 99 ~~~~l~~l~~l~l~~n~l~-----~~~~~~~-~~~l~~l~l~~n~~~~~~----~~~~--~~~~~L~~L~l~~n~l~~-- 164 (195)
.+..+++|+.|++++|.++ .++.... +++|+.|++++|.++... +..+ ..+++|+.|++++|.+++
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g 290 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence 3444455555555555542 2222222 455555555555554331 1122 224556666666666665
Q ss_pred --eccccc-cCCCCCcEEEcCCCCCCCCC
Q psy14767 165 --IYSEAF-YGIDKIDTLKLNGNKLASLK 190 (195)
Q Consensus 165 --~~~~~~-~~l~~l~~l~l~~n~l~~~~ 190 (195)
..+..+ .++++|+.|++++|++++..
T Consensus 291 ~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 291 VRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 122222 44566666666666666543
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.39 E-value=1.1e-11 Score=96.94 Aligned_cols=101 Identities=14% Similarity=0.262 Sum_probs=69.0
Q ss_pred CcceecccccCCCCCccEEEcCCCCCC-----cccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcce
Q psy14767 91 KLEFVDDRAFRGVTNMDELDLSDNLLS-----TVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163 (195)
Q Consensus 91 ~i~~~~~~~~~~l~~l~~l~l~~n~l~-----~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 163 (195)
.++.+...+|.++.+|+.+++.++.+. .++...| +++|+.+.+. +.++.+...+|.++++|+.+++..| ++
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc
Confidence 355555666666666666666665544 4566666 5667777776 3467777777777777777777544 77
Q ss_pred eeccccccCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767 164 TIYSEAFYGIDKIDTLKLNGNKLASLKPRTW 194 (195)
Q Consensus 164 ~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~ 194 (195)
.+...+|.++ +|+.+++.+|.+..+++..|
T Consensus 336 ~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F 365 (401)
T 4fdw_A 336 QINFSAFNNT-GIKEVKVEGTTPPQVFEKVW 365 (401)
T ss_dssp EECTTSSSSS-CCCEEEECCSSCCBCCCSSC
T ss_pred EEcHHhCCCC-CCCEEEEcCCCCcccccccc
Confidence 7777778777 78888888887777766655
No 136
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.36 E-value=9.5e-14 Score=105.88 Aligned_cols=148 Identities=15% Similarity=0.215 Sum_probs=87.0
Q ss_pred ceEEEecCCCcee--eCCCCC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecC-Cccee-cccccCCCCCccE
Q psy14767 35 KRTVECIDRNFYT--IPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFV-DDRAFRGVTNMDE 108 (195)
Q Consensus 35 ~~~~~c~~~~l~~--~p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n-~i~~~-~~~~~~~l~~l~~ 108 (195)
-+.++.+++.+.. +|..+. ++++.|++++|.++...+..+. .+++|++|++++| .++.. .+..+..+++|+.
T Consensus 95 L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~--~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA--KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT--TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh--cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 4667777776653 443222 5788888888877755555555 5677888888877 56542 2334556677777
Q ss_pred EEcCCC-CCCc--ccCccc-cc-ccCeeecCCCc--cc--ccCCCcCCCCCCCCEEecCCCc-ceeeccccccCCCCCcE
Q psy14767 109 LDLSDN-LLST--VPSLIY-IP-YLKSINLAHNP--IH--QISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYGIDKIDT 178 (195)
Q Consensus 109 l~l~~n-~l~~--~~~~~~-~~-~l~~l~l~~n~--~~--~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~l~~ 178 (195)
|++++| .++. ++.... ++ +|+.|++++|. ++ .++ ..+..+++|+.|++++|. +++.....+..+++|+.
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH-HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH-HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 777777 6663 232222 55 66666666663 22 121 123345566666666666 45444445555566666
Q ss_pred EEcCCCC
Q psy14767 179 LKLNGNK 185 (195)
Q Consensus 179 l~l~~n~ 185 (195)
|++++|.
T Consensus 252 L~l~~~~ 258 (336)
T 2ast_B 252 LSLSRCY 258 (336)
T ss_dssp EECTTCT
T ss_pred eeCCCCC
Confidence 6666653
No 137
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.36 E-value=3.5e-13 Score=104.83 Aligned_cols=153 Identities=16% Similarity=0.239 Sum_probs=114.5
Q ss_pred CceEEEecCCCcee-----eCCCCC--CceeEEEeecCCccccc----hhhhhccCC---------CCccEEEeecCCcc
Q psy14767 34 GKRTVECIDRNFYT-----IPEGID--LDTQVLDLSSNNINVLQ----KEIFLQMGI---------TNIQKLYLRKCKLE 93 (195)
Q Consensus 34 ~~~~~~c~~~~l~~-----~p~~~~--~~l~~L~l~~n~i~~~~----~~~~~~~~l---------~~L~~l~l~~n~i~ 93 (195)
.-+.++.+++.+.. +|..+. ++++.|++++|.++... ...+. .+ ++|++|++++|.++
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~--~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ--ELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHH--HHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHH--HHhhhhhcccCCCCcEEECCCCCCC
Confidence 35778888888775 454443 78999999999997322 22232 33 78999999999997
Q ss_pred eec-c---cccCCCCCccEEEcCCCCCCc------ccCccc-ccccCeeecCCCccc----ccCCCcCCCCCCCCEEecC
Q psy14767 94 FVD-D---RAFRGVTNMDELDLSDNLLST------VPSLIY-IPYLKSINLAHNPIH----QISSYSFQSTPGIRYIDMS 158 (195)
Q Consensus 94 ~~~-~---~~~~~l~~l~~l~l~~n~l~~------~~~~~~-~~~l~~l~l~~n~~~----~~~~~~~~~~~~L~~L~l~ 158 (195)
... + ..+..+++|+.|++++|+++. ++.... +++|+.|++++|.++ ...+..+..+++|+.|+++
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 322 2 356678899999999999982 231333 889999999999985 2223356778999999999
Q ss_pred CCcceee----ccccc--cCCCCCcEEEcCCCCCCC
Q psy14767 159 NCQIHTI----YSEAF--YGIDKIDTLKLNGNKLAS 188 (195)
Q Consensus 159 ~n~l~~~----~~~~~--~~l~~l~~l~l~~n~l~~ 188 (195)
+|.+++. .+..+ +.+++|+.|++++|++++
T Consensus 253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 9999876 23445 348999999999999886
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.34 E-value=2.4e-11 Score=95.09 Aligned_cols=145 Identities=17% Similarity=0.334 Sum_probs=73.1
Q ss_pred CceeeCCCCC---CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCC------
Q psy14767 44 NFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN------ 114 (195)
Q Consensus 44 ~l~~~p~~~~---~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n------ 114 (195)
.++.++.... .+++.+++.+|.++.++...|. ..+|+.+.+. +.++.+...+|.++.+|+.+++..+
T Consensus 167 ~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~---~~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~ 242 (401)
T 4fdw_A 167 TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV---YAGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPENVSTIGQ 242 (401)
T ss_dssp TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT---TCCCSEEECC-TTCCEECTTTTTTCTTCCCEECCTTCCEECT
T ss_pred CccEehHHHhhCcccCCeeecCCCcceEechhhEe---ecccCEEEeC-CchheehhhHhhCCCCCCEEecCCCccCccc
Confidence 3444444333 3456666666666655555553 3455555555 2355566666666666666666542
Q ss_pred ---------------CCCcccCccc--ccccCeeecCCCccc-----ccCCCcCCCCCCCCEEecCCCcceeeccccccC
Q psy14767 115 ---------------LLSTVPSLIY--IPYLKSINLAHNPIH-----QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172 (195)
Q Consensus 115 ---------------~l~~~~~~~~--~~~l~~l~l~~n~~~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 172 (195)
.++.++..+| +.+|+.+.+.++.+. .++..+|.++++|+.+++. +.++.+...+|.+
T Consensus 243 ~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~ 321 (401)
T 4fdw_A 243 EAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGG 321 (401)
T ss_dssp TTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTT
T ss_pred cccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcC
Confidence 2233333333 344444444444332 3444455555555555555 2355555555555
Q ss_pred CCCCcEEEcCCCCCCCCCCCCC
Q psy14767 173 IDKIDTLKLNGNKLASLKPRTW 194 (195)
Q Consensus 173 l~~l~~l~l~~n~l~~~~~~~~ 194 (195)
+.+|+.+++..| ++.+...+|
T Consensus 322 c~~L~~l~lp~~-l~~I~~~aF 342 (401)
T 4fdw_A 322 NRKVTQLTIPAN-VTQINFSAF 342 (401)
T ss_dssp CCSCCEEEECTT-CCEECTTSS
T ss_pred CCCccEEEECcc-ccEEcHHhC
Confidence 555555555333 445544444
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=1.4e-12 Score=101.12 Aligned_cols=153 Identities=14% Similarity=0.109 Sum_probs=103.9
Q ss_pred ceEEEecCCCceeeC-----CC---CCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccccc-----C
Q psy14767 35 KRTVECIDRNFYTIP-----EG---IDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF-----R 101 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p-----~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~-----~ 101 (195)
.+.++.+++.+.... .. ....++.|++++|.++......+.. .+++|+.|++++|.++......+ .
T Consensus 74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP-VFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH-HHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred CCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH-HHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 356777777765422 11 1247888999998887543333221 34678899999998876544433 2
Q ss_pred CCCCccEEEcCCCCCCcccCcc-----c-ccccCeeecCCCcccccC----CCcCCCCCCCCEEecCCCcceeecc----
Q psy14767 102 GVTNMDELDLSDNLLSTVPSLI-----Y-IPYLKSINLAHNPIHQIS----SYSFQSTPGIRYIDMSNCQIHTIYS---- 167 (195)
Q Consensus 102 ~l~~l~~l~l~~n~l~~~~~~~-----~-~~~l~~l~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~---- 167 (195)
..+.|+.|++++|.++...... . .++|++|++++|.++... ...+...++|+.|++++|.+++...
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 4578899999999887532221 1 678999999999887543 2344556789999999999986533
Q ss_pred ccccCCCCCcEEEcCCCCCCC
Q psy14767 168 EAFYGIDKIDTLKLNGNKLAS 188 (195)
Q Consensus 168 ~~~~~l~~l~~l~l~~n~l~~ 188 (195)
.++...++|+.|++++|++++
T Consensus 233 ~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHhCCCCCEEeccCCCCCH
Confidence 344566889999999998864
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.22 E-value=2.7e-12 Score=101.81 Aligned_cols=151 Identities=13% Similarity=0.222 Sum_probs=101.2
Q ss_pred eEEEecCCCceeeCCC--C--CCceeEEEeecCCccccc----hhhhhccCCCCccEEEeecCCcceeccccc-CCCC--
Q psy14767 36 RTVECIDRNFYTIPEG--I--DLDTQVLDLSSNNINVLQ----KEIFLQMGITNIQKLYLRKCKLEFVDDRAF-RGVT-- 104 (195)
Q Consensus 36 ~~~~c~~~~l~~~p~~--~--~~~l~~L~l~~n~i~~~~----~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~-~~l~-- 104 (195)
+.++.+++.+...+.. + .++++.|++++|.++... +..+. .+++|++|++++|.++......+ ..+.
T Consensus 6 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 6 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALR--VNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHH--TCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred eehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHH--hCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 4567777776554321 1 257888999998887432 23333 56789999999988876443322 2333
Q ss_pred --CccEEEcCCCCCCcc-----cCccc-ccccCeeecCCCcccccCCCc-----CCCCCCCCEEecCCCcceeec----c
Q psy14767 105 --NMDELDLSDNLLSTV-----PSLIY-IPYLKSINLAHNPIHQISSYS-----FQSTPGIRYIDMSNCQIHTIY----S 167 (195)
Q Consensus 105 --~l~~l~l~~n~l~~~-----~~~~~-~~~l~~l~l~~n~~~~~~~~~-----~~~~~~L~~L~l~~n~l~~~~----~ 167 (195)
+|+.|++++|.++.. +.... +++|+.|++++|.++...... ....++|++|++++|++++.. +
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 688999998888742 22222 778889999988876432211 223457899999999888643 4
Q ss_pred ccccCCCCCcEEEcCCCCCCC
Q psy14767 168 EAFYGIDKIDTLKLNGNKLAS 188 (195)
Q Consensus 168 ~~~~~l~~l~~l~l~~n~l~~ 188 (195)
..+..+++|+.|++++|++++
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHH
T ss_pred HHHhhCCCCCEEECcCCCcch
Confidence 456667889999999998754
No 141
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=99.22 E-value=1.7e-11 Score=80.95 Aligned_cols=65 Identities=26% Similarity=0.521 Sum_probs=58.6
Q ss_pred CCCCCCeecccCCceEEEecCCCce--eeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCc
Q psy14767 22 SCPLGCSCKWKAGKRTVECIDRNFY--TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL 92 (195)
Q Consensus 22 ~c~~~c~c~~~~~~~~~~c~~~~l~--~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i 92 (195)
+||..|.|. ...++|++++++ .+|.+++.+++.|+|++|.|+.+++..|. .+++|+.|++.+|.+
T Consensus 1 ~CP~~C~C~----~~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 1 PCPAPCSCA----GTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLD--ALPALRTAHLGANPW 67 (130)
T ss_dssp CCCTTCEEE----TTEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGG--GCTTCCEEECCSSCC
T ss_pred CcCCCCEEc----CCEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhh--hccccCEEEecCCCe
Confidence 599999998 479999999999 99999999999999999999999998887 678888888888865
No 142
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.21 E-value=1.1e-12 Score=104.00 Aligned_cols=64 Identities=13% Similarity=0.292 Sum_probs=40.5
Q ss_pred ccccCeeecCCCcccccCCCcCC-----CCCCCCEEecCCCccee----eccccccCCCCCcEEEcCCCCCCC
Q psy14767 125 IPYLKSINLAHNPIHQISSYSFQ-----STPGIRYIDMSNCQIHT----IYSEAFYGIDKIDTLKLNGNKLAS 188 (195)
Q Consensus 125 ~~~l~~l~l~~n~~~~~~~~~~~-----~~~~L~~L~l~~n~l~~----~~~~~~~~l~~l~~l~l~~n~l~~ 188 (195)
+++|+.|++++|.++......+. ..++|++|++++|.+++ ..+..+..+++|+.|++++|++++
T Consensus 340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 46677777777766544322111 14577777777777774 334556667778888888887764
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.11 E-value=5.5e-12 Score=97.79 Aligned_cols=137 Identities=12% Similarity=0.163 Sum_probs=102.0
Q ss_pred CCCceeEEEeecCCccccchhhhhcc---CCCCccEEEeecCCcceeccccc-CCCCCccEEEcCCCCCCcccCccc---
Q psy14767 52 IDLDTQVLDLSSNNINVLQKEIFLQM---GITNIQKLYLRKCKLEFVDDRAF-RGVTNMDELDLSDNLLSTVPSLIY--- 124 (195)
Q Consensus 52 ~~~~l~~L~l~~n~i~~~~~~~~~~~---~l~~L~~l~l~~n~i~~~~~~~~-~~l~~l~~l~l~~n~l~~~~~~~~--- 124 (195)
+.+.++.|++++|.++......+... ..++|+.|++++|.++......+ ..+.+++.|++++|.++......+
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 34678999999999986555544321 23689999999999876443333 235689999999999975433222
Q ss_pred ----ccccCeeecCCCcccccCC----CcCCCCCCCCEEecCCCcceeec----cccccCCCCCcEEEcCCCCCCC
Q psy14767 125 ----IPYLKSINLAHNPIHQISS----YSFQSTPGIRYIDMSNCQIHTIY----SEAFYGIDKIDTLKLNGNKLAS 188 (195)
Q Consensus 125 ----~~~l~~l~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~l~~l~l~~n~l~~ 188 (195)
.++|+.|++++|.++.... ..+...++|++|+|++|.+++.. .+++...++|+.|++++|.+++
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 4679999999999876332 23356788999999999998653 3556777899999999999875
No 144
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.89 E-value=2e-08 Score=77.80 Aligned_cols=133 Identities=14% Similarity=0.311 Sum_probs=100.9
Q ss_pred ceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeee
Q psy14767 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSIN 132 (195)
Q Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~ 132 (195)
.++.+.+.. .++.+....|. ++..|+.+.+..+ ++.+...+|.++..++.+++.. .++.++...| +.+|+.+.
T Consensus 218 ~l~~i~~~~-~~~~i~~~~f~--~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 218 NLKKITITS-GVTTLGDGAFY--GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp SCSEEECCT-TCCEECTTTTT--TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEE
T ss_pred ccceeeecc-ceeEEcccccc--CCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccccccc
Confidence 445555543 35556666665 6778888888765 7788888888888888888854 4777777777 77888888
Q ss_pred cCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767 133 LAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW 194 (195)
Q Consensus 133 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~ 194 (195)
+.++.++.++..+|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|
T Consensus 293 l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF 352 (379)
T 4h09_A 293 MDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAF 352 (379)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred ccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHh
Confidence 8888888888888988889999988754 78888888888888888888654 666666555
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.68 E-value=2.6e-09 Score=87.13 Aligned_cols=66 Identities=12% Similarity=0.137 Sum_probs=48.4
Q ss_pred ccccCeeecCCCcccccC-CCcCCCCCCCCEEecCCCcceeec-cccccCCCCCcEEEcCCCCCCCCC
Q psy14767 125 IPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIY-SEAFYGIDKIDTLKLNGNKLASLK 190 (195)
Q Consensus 125 ~~~l~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~l~~l~l~~n~l~~~~ 190 (195)
+++|+.|++++|+++... +..+.++++|+.|++++|.+++.. +.....+++|+.|++++|++++..
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTG 529 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTC
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHH
Confidence 567888888888876532 223466788999999999987542 334467889999999999987653
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.63 E-value=4.1e-07 Score=70.83 Aligned_cols=114 Identities=16% Similarity=0.345 Sum_probs=87.3
Q ss_pred CccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccC
Q psy14767 65 NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQIS 142 (195)
Q Consensus 65 ~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~ 142 (195)
.++.+....|. ++..|+.+.+..+ +..+...+|.++..|+.+.+. +.++.++..+| +.+|+.+.+..+ ++.+.
T Consensus 252 ~v~~i~~~aF~--~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~ 326 (394)
T 4gt6_A 252 GVARIETHAFD--SCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQIL 326 (394)
T ss_dssp TEEEECTTTTT--TCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred cceEcccceee--ecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEeh
Confidence 34455556665 6777888888654 456777788888888888885 56778888887 678888888754 77888
Q ss_pred CCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCC
Q psy14767 143 SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN 184 (195)
Q Consensus 143 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n 184 (195)
..+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+++.++
T Consensus 327 ~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 327 DDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred HhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 888888888888888654 77787888888888888888876
No 147
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.60 E-value=6.7e-07 Score=69.15 Aligned_cols=116 Identities=18% Similarity=0.300 Sum_probs=99.1
Q ss_pred CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCee
Q psy14767 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI 131 (195)
Q Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l 131 (195)
..++.+.+..+ ++.+....|. ++.+++.+.+.. .++.+...+|.++.+|+.+.+..+.++.++..+| +.+|+.+
T Consensus 240 ~~L~~i~lp~~-v~~I~~~aF~--~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 240 KALDEIAIPKN-VTSIGSFLLQ--NCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp SSCCEEEECTT-CCEECTTTTT--TCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred ccceEEEcCCC-ccEeCccccc--eeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 46788888765 7888888887 788999999974 5888888999999999999999999999999998 7899999
Q ss_pred ecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCC
Q psy14767 132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK 175 (195)
Q Consensus 132 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 175 (195)
.+..+ ++.|...+|.++.+|+.+.+..+ ++.+...+|.++..
T Consensus 316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 316 TLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred EcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 99754 88999999999999999999765 88888888887653
No 148
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.56 E-value=4.3e-08 Score=79.95 Aligned_cols=84 Identities=14% Similarity=0.137 Sum_probs=45.7
Q ss_pred ceeEEEeecCC-ccccc-hhhhhccCCCCccEEEeecCCcceecc----cccCCCCCccEEEcCCCCCCcccCcc-----
Q psy14767 55 DTQVLDLSSNN-INVLQ-KEIFLQMGITNIQKLYLRKCKLEFVDD----RAFRGVTNMDELDLSDNLLSTVPSLI----- 123 (195)
Q Consensus 55 ~l~~L~l~~n~-i~~~~-~~~~~~~~l~~L~~l~l~~n~i~~~~~----~~~~~l~~l~~l~l~~n~l~~~~~~~----- 123 (195)
+++.|+++++. ++... ..... .+++|++|++++|.++.... ..+..+++|+.|++++|.++.+....
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~ 216 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVT--HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA 216 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHH--HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHh--hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH
Confidence 47778877765 22110 11111 45677777777776654321 12334567777777777665322111
Q ss_pred c-ccccCeeecCCCcccc
Q psy14767 124 Y-IPYLKSINLAHNPIHQ 140 (195)
Q Consensus 124 ~-~~~l~~l~l~~n~~~~ 140 (195)
. +++|+.|++++|.+..
T Consensus 217 ~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HHCTTCCEEECSSCBGGG
T ss_pred hhCCCCcEEeccCccHHH
Confidence 1 5667777776665544
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=1.4e-08 Score=70.97 Aligned_cols=110 Identities=10% Similarity=0.094 Sum_probs=69.8
Q ss_pred CCCCccEEEeecC-Ccceec----ccccCCCCCccEEEcCCCCCCcccCccc------ccccCeeecCCCcccccC----
Q psy14767 78 GITNIQKLYLRKC-KLEFVD----DRAFRGVTNMDELDLSDNLLSTVPSLIY------IPYLKSINLAHNPIHQIS---- 142 (195)
Q Consensus 78 ~l~~L~~l~l~~n-~i~~~~----~~~~~~l~~l~~l~l~~n~l~~~~~~~~------~~~l~~l~l~~n~~~~~~---- 142 (195)
..++|++|++++| .+.... ..++...++++.|++++|.+..-..... .++|++|++++|.++...
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 4566777777777 665322 2334555677778887777764222111 457788888888776422
Q ss_pred CCcCCCCCCCCEEec--CCCcceeec----cccccCCCCCcEEEcCCCCCC
Q psy14767 143 SYSFQSTPGIRYIDM--SNCQIHTIY----SEAFYGIDKIDTLKLNGNKLA 187 (195)
Q Consensus 143 ~~~~~~~~~L~~L~l--~~n~l~~~~----~~~~~~l~~l~~l~l~~n~l~ 187 (195)
...+...++|++|++ ++|.+++.. .+++...++|+.|++++|.+.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 123455567888888 778887542 244556678888888888753
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.51 E-value=1.1e-06 Score=68.34 Aligned_cols=123 Identities=15% Similarity=0.309 Sum_probs=55.1
Q ss_pred ceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc-ccccCeeec
Q psy14767 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINL 133 (195)
Q Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~-~~~l~~l~l 133 (195)
+++.+.+.. .++.+....|. ++++|+.+++..+ ++.+...+|.++..|+.+.+..+ ++.+...+| ...+.....
T Consensus 72 ~L~~i~lp~-~i~~I~~~aF~--~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~ 146 (394)
T 4fs7_A 72 KVTEIKIPS-TVREIGEFAFE--NCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITI 146 (394)
T ss_dssp TEEEEECCT-TCCEECTTTTT--TCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEEC
T ss_pred CceEEEeCC-CccCcchhHhh--CCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccccccc
Confidence 344444432 24445444444 4445555555432 44444445554444444433221 222222222 111111111
Q ss_pred CCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCC
Q psy14767 134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN 184 (195)
Q Consensus 134 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n 184 (195)
......+...+|.++++|+.+.+.++ +..+...+|.++.+|+.+++..+
T Consensus 147 -~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 147 -PEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp -CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred -CccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC
Confidence 11223344455666666666666543 34455556666666666666544
No 151
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.50 E-value=1.4e-08 Score=82.77 Aligned_cols=85 Identities=11% Similarity=0.142 Sum_probs=47.7
Q ss_pred CCCCCccEEEcCCCCCCcccCc--cc-ccccCeeecCCCcccccCCCcC-CCCCCCCEEecCCCcceeeccc-cccCCCC
Q psy14767 101 RGVTNMDELDLSDNLLSTVPSL--IY-IPYLKSINLAHNPIHQISSYSF-QSTPGIRYIDMSNCQIHTIYSE-AFYGIDK 175 (195)
Q Consensus 101 ~~l~~l~~l~l~~n~l~~~~~~--~~-~~~l~~l~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~ 175 (195)
..+++|+.|++++ .++..... .. .++|+.|++++|.++......+ ..+++|+.|++++|.+++.... ....+++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 3445666666654 33321111 11 5567777777776654332222 3467777777777777543322 3345677
Q ss_pred CcEEEcCCCCC
Q psy14767 176 IDTLKLNGNKL 186 (195)
Q Consensus 176 l~~l~l~~n~l 186 (195)
|+.|++++|++
T Consensus 508 L~~L~l~~~~~ 518 (594)
T 2p1m_B 508 MRSLWMSSCSV 518 (594)
T ss_dssp SSEEEEESSCC
T ss_pred CCEEeeeCCCC
Confidence 77777777765
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.47 E-value=2.2e-06 Score=66.64 Aligned_cols=101 Identities=20% Similarity=0.360 Sum_probs=70.0
Q ss_pred CCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEE
Q psy14767 78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYI 155 (195)
Q Consensus 78 ~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L 155 (195)
.+..++.+....+ .++..+|.++.+|+.+.+..+ ++.++..+| +.+|+.+.+..+ ++.+...+|.++.+|+.+
T Consensus 274 ~~~~l~~~~~~~~---~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i 348 (394)
T 4fs7_A 274 NCSGLKKVIYGSV---IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNI 348 (394)
T ss_dssp TCTTCCEEEECSS---EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEE
T ss_pred cccccceeccCce---eeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEE
Confidence 3344444444332 244556667777777777543 667777777 677888888643 777888888888888888
Q ss_pred ecCCCcceeeccccccCCCCCcEEEcCCC
Q psy14767 156 DMSNCQIHTIYSEAFYGIDKIDTLKLNGN 184 (195)
Q Consensus 156 ~l~~n~l~~~~~~~~~~l~~l~~l~l~~n 184 (195)
++..+ ++.+...+|.++.+|+.+++..+
T Consensus 349 ~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 349 NFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 88766 77777788888888888887654
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.46 E-value=1.7e-06 Score=67.38 Aligned_cols=124 Identities=10% Similarity=0.272 Sum_probs=93.2
Q ss_pred CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCee
Q psy14767 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI 131 (195)
Q Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l 131 (195)
..++.+.+..+ +..+....|. +++.|+.+.+. +.++.++..+|.++.+|+.+++..+ ++.+...+| +.+|+.+
T Consensus 265 ~~L~~i~lp~~-~~~I~~~aF~--~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 265 AYLASVKMPDS-VVSIGTGAFM--NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI 339 (394)
T ss_dssp SSCCEEECCTT-CCEECTTTTT--TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccEEecccc-cceecCcccc--cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence 35677777654 4557777776 78899999996 6788999999999999999999754 888999888 7899999
Q ss_pred ecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCC
Q psy14767 132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKL 186 (195)
Q Consensus 132 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l 186 (195)
.+..+ ++.+...+|.++++|+.+++.++.... .++....+|+.+.+..+.+
T Consensus 340 ~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 340 AIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred EECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 99654 889999999999999999999886432 3566777888888876643
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.37 E-value=1.9e-07 Score=71.95 Aligned_cols=129 Identities=15% Similarity=0.119 Sum_probs=73.4
Q ss_pred CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccccc--CCCCCccEEEcCC--CC------CCcccCcc
Q psy14767 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF--RGVTNMDELDLSD--NL------LSTVPSLI 123 (195)
Q Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~--~~l~~l~~l~l~~--n~------l~~~~~~~ 123 (195)
+.++.|.++++.--.+++ + .+++|+.|++..+.+..-....+ ..+++|+.|+|+. +. +..+....
T Consensus 172 P~L~~L~L~g~~~l~l~~--~---~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLSIGK--K---PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp TTCCEEEEECCBTCBCCS--C---BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred CCCcEEEEeCCCCceecc--c---cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 467777777762112222 1 35677777777776643322222 2567788887743 11 11111111
Q ss_pred ---cccccCeeecCCCcccccCCCc---CCCCCCCCEEecCCCcceeecc----ccccCCCCCcEEEcCCCCCC
Q psy14767 124 ---YIPYLKSINLAHNPIHQISSYS---FQSTPGIRYIDMSNCQIHTIYS----EAFYGIDKIDTLKLNGNKLA 187 (195)
Q Consensus 124 ---~~~~l~~l~l~~n~~~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~l~~l~l~~n~l~ 187 (195)
.+++|+.|.+.+|.+....... ...+++|++|+|+.|.+++... ..+..+++|+.|++++|.++
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 1577888888877765321101 1245778888888888876422 22345678888888888765
No 155
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.33 E-value=1.8e-07 Score=76.30 Aligned_cols=127 Identities=15% Similarity=0.214 Sum_probs=58.8
Q ss_pred ceeEEEeecCCccccchhhhhccCCCCccEEEeecC-Ccceec-ccccCCCCCccEEEcCCCCCCcccC-----ccc-cc
Q psy14767 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVD-DRAFRGVTNMDELDLSDNLLSTVPS-----LIY-IP 126 (195)
Q Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n-~i~~~~-~~~~~~l~~l~~l~l~~n~l~~~~~-----~~~-~~ 126 (195)
+++.|+++++.++......+.. .+++|+.|++.+| .++... +..+..+++|+.|++++|.++.... ... ++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAK-SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHH-HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHH-hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 5566666666555333322210 2456666666655 333211 1122245566666666665443211 111 44
Q ss_pred ccCeeecCCCcccccCCCc----CCCCCCCCEEecCCC-cceeeccccccCCCCCcEEEcCCC
Q psy14767 127 YLKSINLAHNPIHQISSYS----FQSTPGIRYIDMSNC-QIHTIYSEAFYGIDKIDTLKLNGN 184 (195)
Q Consensus 127 ~l~~l~l~~n~~~~~~~~~----~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~l~~l~l~~n 184 (195)
+|+.|++++|. ..+.... ...+++|+.|++++| .+++ .+..+..+++|+.|+++++
T Consensus 185 ~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 185 SLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBC
T ss_pred cCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccc
Confidence 56666666554 1111111 122456666666665 3334 2344555566666665544
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.27 E-value=7.3e-08 Score=67.33 Aligned_cols=111 Identities=12% Similarity=0.097 Sum_probs=78.8
Q ss_pred CceeEEEeecC-Cccccchhhhhc--cCCCCccEEEeecCCcceec----ccccCCCCCccEEEcCCCCCCcccC-----
Q psy14767 54 LDTQVLDLSSN-NINVLQKEIFLQ--MGITNIQKLYLRKCKLEFVD----DRAFRGVTNMDELDLSDNLLSTVPS----- 121 (195)
Q Consensus 54 ~~l~~L~l~~n-~i~~~~~~~~~~--~~l~~L~~l~l~~n~i~~~~----~~~~~~l~~l~~l~l~~n~l~~~~~----- 121 (195)
+.++.|++++| .+..-....+.. ...++|++|++++|.+.... ..++...+.|+.|++++|.++.-..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 57999999999 887533222211 04578999999999987533 2344556789999999999985321
Q ss_pred ccc-ccccCeeec--CCCcccccCC----CcCCCCCCCCEEecCCCccee
Q psy14767 122 LIY-IPYLKSINL--AHNPIHQISS----YSFQSTPGIRYIDMSNCQIHT 164 (195)
Q Consensus 122 ~~~-~~~l~~l~l--~~n~~~~~~~----~~~~~~~~L~~L~l~~n~l~~ 164 (195)
... .++|+.|++ ++|.++.... ..+...++|++|++++|.+..
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 112 678999999 8898875321 234445789999999999864
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.24 E-value=1.4e-07 Score=69.62 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=53.6
Q ss_pred CCCCCccEEEcCCCCCCcccCcc---c-ccccCeeecCCCcccccCC-CcCCCCCCCCEEecCCCcceeec-------cc
Q psy14767 101 RGVTNMDELDLSDNLLSTVPSLI---Y-IPYLKSINLAHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTIY-------SE 168 (195)
Q Consensus 101 ~~l~~l~~l~l~~n~l~~~~~~~---~-~~~l~~l~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~-------~~ 168 (195)
..++.|+.|++++|+++.++... . +++|+.|++++|.++.+.. ..+..+ +|+.|++++|.+++-. ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 34678888888888888765422 2 7788888888888877632 233344 7888888888887521 13
Q ss_pred cccCCCCCcEEE
Q psy14767 169 AFYGIDKIDTLK 180 (195)
Q Consensus 169 ~~~~l~~l~~l~ 180 (195)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 456677777765
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.20 E-value=1.7e-06 Score=63.72 Aligned_cols=79 Identities=25% Similarity=0.446 Sum_probs=53.2
Q ss_pred EEcCCCCCCcccCccc-----ccccCeeecCCCcccccCC--CcCCCCCCCCEEecCCCcceeec-cccccCCCCCcEEE
Q psy14767 109 LDLSDNLLSTVPSLIY-----IPYLKSINLAHNPIHQISS--YSFQSTPGIRYIDMSNCQIHTIY-SEAFYGIDKIDTLK 180 (195)
Q Consensus 109 l~l~~n~l~~~~~~~~-----~~~l~~l~l~~n~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~l~~l~ 180 (195)
++++.|+...++.... +++|+.|++++|.++.+.. ..+..+++|+.|+|++|+++++. ...+..+ +|+.|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence 5566665444433221 6788888888888887653 33446788888888888888762 2223333 788888
Q ss_pred cCCCCCCC
Q psy14767 181 LNGNKLAS 188 (195)
Q Consensus 181 l~~n~l~~ 188 (195)
+++|++++
T Consensus 227 L~~Npl~~ 234 (267)
T 3rw6_A 227 LDGNSLCD 234 (267)
T ss_dssp CTTSTTGG
T ss_pred ccCCcCcc
Confidence 88888875
No 159
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.03 E-value=4.2e-06 Score=64.51 Aligned_cols=149 Identities=13% Similarity=0.167 Sum_probs=93.4
Q ss_pred ceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecC--C------cceeccccc--CCCC
Q psy14767 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC--K------LEFVDDRAF--RGVT 104 (195)
Q Consensus 35 ~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n--~------i~~~~~~~~--~~l~ 104 (195)
-+.+.+.++.-..+|.-..++++.|.+..+.++.-....+....+++|+.|+++.+ . +..+.+ .+ ..++
T Consensus 174 L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p 252 (362)
T 2ra8_A 174 LNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFP 252 (362)
T ss_dssp CCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCT
T ss_pred CcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCC
Confidence 45566655421233332246899999999988743333332225789999998632 1 212211 22 2478
Q ss_pred CccEEEcCCCCCCccc-Cc---c-cccccCeeecCCCcccccCC----CcCCCCCCCCEEecCCCcceeeccccccCCCC
Q psy14767 105 NMDELDLSDNLLSTVP-SL---I-YIPYLKSINLAHNPIHQISS----YSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK 175 (195)
Q Consensus 105 ~l~~l~l~~n~l~~~~-~~---~-~~~~l~~l~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 175 (195)
+|+.|++..|.+.... .. . .+++|+.|+++.|.++.... ..+..+++|+.|++++|.+++....++...-
T Consensus 253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al- 331 (362)
T 2ra8_A 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL- 331 (362)
T ss_dssp TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-
T ss_pred CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-
Confidence 9999999998876311 11 1 27899999999998876321 1223468999999999998865444444311
Q ss_pred CcEEEcCCCC
Q psy14767 176 IDTLKLNGNK 185 (195)
Q Consensus 176 l~~l~l~~n~ 185 (195)
-..++++.++
T Consensus 332 g~~~~~~~~~ 341 (362)
T 2ra8_A 332 PMKIDVSDSQ 341 (362)
T ss_dssp CSEEECCSBC
T ss_pred CCEEEecCCc
Confidence 3467888876
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.92 E-value=2.8e-05 Score=50.95 Aligned_cols=56 Identities=13% Similarity=0.180 Sum_probs=45.2
Q ss_pred cEEEcCCCCCC--cccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcce
Q psy14767 107 DELDLSDNLLS--TVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163 (195)
Q Consensus 107 ~~l~l~~n~l~--~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 163 (195)
..++.+++.++ .+|... ..+++.|++++|.++.++...|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36788888888 777653 446888899999998888888888888999999988875
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.77 E-value=4.2e-06 Score=57.68 Aligned_cols=85 Identities=8% Similarity=0.127 Sum_probs=58.3
Q ss_pred CCccEEEeecCCcceecccccCCCCCccEEEcCCCC-CCccc--Cccc----ccccCeeecCCCc-ccccCCCcCCCCCC
Q psy14767 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL-LSTVP--SLIY----IPYLKSINLAHNP-IHQISSYSFQSTPG 151 (195)
Q Consensus 80 ~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~-l~~~~--~~~~----~~~l~~l~l~~n~-~~~~~~~~~~~~~~ 151 (195)
.+|+.|+++++.++...-..+.++++|+.|+++++. ++.-. .... .++|+.|++++|. ++.-.-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 369999999999877666667788899999998873 55311 1111 2368888888874 66543334556788
Q ss_pred CCEEecCCCc-cee
Q psy14767 152 IRYIDMSNCQ-IHT 164 (195)
Q Consensus 152 L~~L~l~~n~-l~~ 164 (195)
|+.|+++++. +++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 8888888775 554
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.66 E-value=9.8e-06 Score=55.83 Aligned_cols=82 Identities=20% Similarity=0.254 Sum_probs=53.7
Q ss_pred CceeEEEeecCCccccchhhhhccCCCCccEEEeecCC-cceecccccCCC----CCccEEEcCCC-CCCc--ccCcccc
Q psy14767 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRAFRGV----TNMDELDLSDN-LLST--VPSLIYI 125 (195)
Q Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~-i~~~~~~~~~~l----~~l~~l~l~~n-~l~~--~~~~~~~ 125 (195)
..++.|+++++.|+...-..+. ++++|+.|++++|. ++...-..+..+ ++|+.|+++++ +++. +.....+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~--~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHME--GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGT--TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHHhc--CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 3688888888887755444454 67888888888885 554333334433 36888888876 4663 2222227
Q ss_pred cccCeeecCCCc
Q psy14767 126 PYLKSINLAHNP 137 (195)
Q Consensus 126 ~~l~~l~l~~n~ 137 (195)
++|+.|+++++.
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 788888888774
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.58 E-value=4.2e-05 Score=53.64 Aligned_cols=107 Identities=12% Similarity=0.076 Sum_probs=68.1
Q ss_pred CCCccEEEeecC-Ccceec----ccccCCCCCccEEEcCCCCCCcccCccc------ccccCeeecCCCcccccCC----
Q psy14767 79 ITNIQKLYLRKC-KLEFVD----DRAFRGVTNMDELDLSDNLLSTVPSLIY------IPYLKSINLAHNPIHQISS---- 143 (195)
Q Consensus 79 l~~L~~l~l~~n-~i~~~~----~~~~~~l~~l~~l~l~~n~l~~~~~~~~------~~~l~~l~l~~n~~~~~~~---- 143 (195)
-++|++|++++| .|.... ..++..-..|+.|++++|.+........ ...|++|++++|.|+.-..
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 356788888774 664321 2345556778888888888774333222 5678888888888764321
Q ss_pred CcCCCCCCCCEEecCCC---cceee----ccccccCCCCCcEEEcCCCC
Q psy14767 144 YSFQSTPGIRYIDMSNC---QIHTI----YSEAFYGIDKIDTLKLNGNK 185 (195)
Q Consensus 144 ~~~~~~~~L~~L~l~~n---~l~~~----~~~~~~~l~~l~~l~l~~n~ 185 (195)
.++..-+.|+.|+|++| .+... ..+++...+.|..|+++.|.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 23444567888988765 34432 23456677788888887764
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.84 E-value=0.00039 Score=48.71 Aligned_cols=86 Identities=12% Similarity=0.187 Sum_probs=62.0
Q ss_pred cCCCCCccEEEcCCC-CCCcccCcc-----c-ccccCeeecCCCcccccCCCc----CCCCCCCCEEecCCCcceeec--
Q psy14767 100 FRGVTNMDELDLSDN-LLSTVPSLI-----Y-IPYLKSINLAHNPIHQISSYS----FQSTPGIRYIDMSNCQIHTIY-- 166 (195)
Q Consensus 100 ~~~l~~l~~l~l~~n-~l~~~~~~~-----~-~~~l~~l~l~~n~~~~~~~~~----~~~~~~L~~L~l~~n~l~~~~-- 166 (195)
+..-+.|+.|+++++ .+..-.... . ...|+.|++++|.+......+ +..-+.|+.|+|++|.|++..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345578999999985 776422111 1 678999999999987544322 333478999999999998643
Q ss_pred --cccccCCCCCcEEEcCCCC
Q psy14767 167 --SEAFYGIDKIDTLKLNGNK 185 (195)
Q Consensus 167 --~~~~~~l~~l~~l~l~~n~ 185 (195)
.+++.....|+.|++++|.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHhhCCceeEEECCCCc
Confidence 3566777889999998653
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=93.06 E-value=0.18 Score=30.98 Aligned_cols=46 Identities=9% Similarity=0.164 Sum_probs=27.5
Q ss_pred CCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCC
Q psy14767 114 NLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNC 160 (195)
Q Consensus 114 n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 160 (195)
..++.+...+| +.+|+.+.+-.+ ++.|...+|.++.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34555666666 556666666543 55666666666666666666543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=91.41 E-value=0.31 Score=29.92 Aligned_cols=46 Identities=24% Similarity=0.448 Sum_probs=26.6
Q ss_pred CccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCC
Q psy14767 65 NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113 (195)
Q Consensus 65 ~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~ 113 (195)
.++.+....|. ++.+|+.+.+.. .++.|...+|.++.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~--~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFA--GNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTT--TCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhc--CCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcC
Confidence 45555555555 566666666654 34555556666666666665544
No 167
>2ljs_A Trypsin inhibitor 3; beta strand, helix, cyclic backbone, hydrolase inhibitor; HET: PCA; NMR {Momordica cochinchinensis}
Probab=38.17 E-value=8.7 Score=17.15 Aligned_cols=11 Identities=45% Similarity=1.087 Sum_probs=8.3
Q ss_pred CCCCCCCeecc
Q psy14767 21 ASCPLGCSCKW 31 (195)
Q Consensus 21 ~~c~~~c~c~~ 31 (195)
+.||..|.|..
T Consensus 15 sdcpgecic~~ 25 (30)
T 2ljs_A 15 SDCPGECICKG 25 (30)
T ss_dssp GGSSTTCCBCT
T ss_pred cCCchhheecc
Confidence 46888888874
No 168
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=22.66 E-value=31 Score=15.21 Aligned_cols=10 Identities=50% Similarity=1.242 Sum_probs=6.0
Q ss_pred CCCCCCCCee
Q psy14767 20 QASCPLGCSC 29 (195)
Q Consensus 20 ~~~c~~~c~c 29 (195)
..+||.+|+-
T Consensus 5 tgtcpsgcsg 14 (31)
T 2hm3_A 5 TGTCPSGCSG 14 (31)
T ss_dssp --CCCTTCCG
T ss_pred cccCCCCcCc
Confidence 3678888853
Done!