RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14767
(195 letters)
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 147 bits (372), Expect = 2e-43
Identities = 50/187 (26%), Positives = 80/187 (42%), Gaps = 10/187 (5%)
Query: 14 LLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEI 73
L + + SCP C C + C + +P+ + T +LDLS NN++ L+ E
Sbjct: 3 LASGRSVVSCPANCLC----ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEW 58
Query: 74 FLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSI 131
+TN+ L L L F+ AF V N+ LDLS N L T+ + L+ +
Sbjct: 59 TPT-RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117
Query: 132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK---IDTLKLNGNKLAS 188
L +N I + +F+ ++ + +S QI E +K + L L+ NKL
Sbjct: 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177
Query: 189 LKPRTWS 195
L
Sbjct: 178 LPLTDLQ 184
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 136 bits (343), Expect = 2e-38
Identities = 56/194 (28%), Positives = 102/194 (52%), Gaps = 13/194 (6%)
Query: 5 FILSVFLLTLL------ASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQV 58
+L V LL++L + + +CP CSC + V C+ +N +P+GI +T++
Sbjct: 11 ALLLVSLLSVLLMGCVAETGSAQTCPSVCSCSNQF--SKVICVRKNLREVPDGISTNTRL 68
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
L+L N I +++ F + +++ L L + + ++ AF G+ N++ L+L DN L+T
Sbjct: 69 LNLHENQIQIIKVNSFKHL--RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT 126
Query: 119 VPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNC-QIHTIYSEAFYGIDK 175
+P+ +Y+ LK + L +NPI I SY+F P +R +D+ ++ I AF G+
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186
Query: 176 IDTLKLNGNKLASL 189
+ L L L +
Sbjct: 187 LRYLNLAMCNLREI 200
Score = 112 bits (283), Expect = 7e-30
Identities = 47/191 (24%), Positives = 88/191 (46%), Gaps = 28/191 (14%)
Query: 5 FILSVFLLTLLASVTQA-SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSS 63
+LSV L+ +A A +CP CSC + V C+ +N +P+GI +T++L+L
Sbjct: 16 SLLSVLLMGCVAETGSAQTCPSVCSCSNQF--SKVICVRKNLREVPDGISTNTRLLNLHE 73
Query: 64 NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI 123
N I +++ F + +++ L L + + ++ AF G+ N++ L+L DN L+T+P+
Sbjct: 74 NQIQIIKVNSFKHL--RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN-- 129
Query: 124 YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKL-N 182
+F ++ + + N I +I S AF I + L L
Sbjct: 130 --------------------GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169
Query: 183 GNKLASLKPRT 193
+L+ +
Sbjct: 170 LKRLSYISEGA 180
Score = 105 bits (265), Expect = 2e-27
Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDDRAFRGVTNMDELDLSDNL 115
+ L L +N I + F I ++++L L + +L ++ + AF G++N+ L+L+
Sbjct: 139 KELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196
Query: 116 LSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK 175
L +P+L + L ++L+ N + I SFQ ++ + M QI I AF +
Sbjct: 197 LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256
Query: 176 IDTLKLNGNKLASLKPRT 193
+ + L N L L
Sbjct: 257 LVEINLAHNNLTLLPHDL 274
Score = 86.3 bits (214), Expect = 3e-20
Identities = 28/131 (21%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
Query: 57 QVLDLSSNN-INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
+ LDL ++ + + F G++N++ L L C L + + +DELDLS N
Sbjct: 163 RRLDLGELKRLSYISEGAF--EGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNH 218
Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGI 173
LS + S + +L+ + + + I I +F + + I++++ + + + F +
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278
Query: 174 DKIDTLKLNGN 184
++ + L+ N
Sbjct: 279 HHLERIHLHHN 289
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 122 bits (309), Expect = 1e-34
Identities = 42/174 (24%), Positives = 79/174 (45%), Gaps = 6/174 (3%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C K T C + +P GI +Q + L N I+ + F N+
Sbjct: 2 CPGACVCY-NEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASF--RACRNL 58
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL-LSTVPS--LIYIPYLKSINLAHNPIH 139
L+L L +D AF G+ +++LDLSDN L +V + L +++L +
Sbjct: 59 TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
++ F+ ++Y+ + + + + + F + + L L+GN+++S+ R
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172
Score = 92.4 bits (230), Expect = 4e-23
Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 4/130 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L + L +F + +Q LYL+ L+ + D FR + N+ L L N +
Sbjct: 108 HTLHLDRCGLQELGPGLFRGL--AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165
Query: 117 STVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGID 174
S+VP + + L + L N + + ++F+ + + + + + +EA +
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225
Query: 175 KIDTLKLNGN 184
+ L+LN N
Sbjct: 226 ALQYLRLNDN 235
Score = 69.3 bits (170), Expect = 1e-14
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L N I+ + + F G+ ++ +L L + ++ V AFR + + L L N L
Sbjct: 156 THLFLHGNRISSVPERAF--RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 117 STVPSLIY--IPYLKSINLAHNPIH 139
S +P+ + L+ + L NP
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWV 238
Score = 56.2 bits (136), Expect = 6e-10
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
L VP I + I L N I + + SF++ + + + + + I +
Sbjct: 15 TTSCPQQGLQAVPVGIP-AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73
Query: 168 EAFYGIDKIDTLKLNGN-KLASLKPRTWS 195
AF G+ ++ L L+ N +L S+ P T+
Sbjct: 74 AAFTGLALLEQLDLSDNAQLRSVDPATFH 102
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 122 bits (307), Expect = 5e-34
Identities = 38/173 (21%), Positives = 75/173 (43%), Gaps = 9/173 (5%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
CP C C R V+C D +P+ + DT +LDL +N I ++ F +
Sbjct: 23 PVCPFRCQC----HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK--NLK 76
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQ 140
N+ L L K+ + AF + ++ L LS N L +P + L+ + + N I +
Sbjct: 77 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHENEITK 135
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHT--IYSEAFYGIDKIDTLKLNGNKLASLKP 191
+ F + +++ + + I + AF G+ K+ +++ + ++
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188
Score = 94.3 bits (235), Expect = 2e-23
Identities = 29/135 (21%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE--FVDDRAFRGVTNMDELDLSDN 114
Q L + N I ++K +F G+ + + L L+ +++ AF+G+ + + ++D
Sbjct: 124 QELRVHENEITKVRKSVFN--GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181
Query: 115 LLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGID 174
++T+P + P L ++L N I ++ + S + + + +S I + + +
Sbjct: 182 NITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240
Query: 175 KIDTLKLNGNKLASL 189
+ L LN NKL +
Sbjct: 241 HLRELHLNNNKLVKV 255
Score = 90.1 bits (224), Expect = 6e-22
Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 11/148 (7%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
TIP+G+ L L N I + G+ N+ KL L + VD+ + ++
Sbjct: 185 TIPQGLPPSLTELHLDGNKITKVDAASLK--GLNNLAKLGLSFNSISAVDNGSLANTPHL 242
Query: 107 DELDLSDNLLSTVPS-LIYIPYLKSINLAHNPIHQISSYSFQST------PGIRYIDMSN 159
EL L++N L VP L Y++ + L +N I I S F + + +
Sbjct: 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302
Query: 160 CQIHT--IYSEAFYGIDKIDTLKLNGNK 185
+ I F + ++L K
Sbjct: 303 NPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
Score = 62.3 bits (152), Expect = 4e-12
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 107 DELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
+ SD L VP + P ++L +N I +I F++ + + + N +I I
Sbjct: 34 RVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 92
Query: 167 SEAFYGIDKIDTLKLNGNKLASLKPRT 193
AF + K++ L L+ N+L L +
Sbjct: 93 PGAFAPLVKLERLYLSKNQLKELPEKM 119
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 117 bits (296), Expect = 2e-32
Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 10/182 (5%)
Query: 12 LTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQK 71
L L A CP GC C R V+C D +P+ I DT +LDL +N+I+ L+K
Sbjct: 16 LDSLPPTYSAMCPFGCHCH----LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRK 71
Query: 72 EIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSI 131
+ F G+ ++ L L K+ + ++AF + + +L +S N L +P + L +
Sbjct: 72 DDFK--GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVEL 128
Query: 132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH--TIYSEAFYGIDKIDTLKLNGNKLASL 189
+ N I ++ F + I+M + AF G+ K++ L+++ KL +
Sbjct: 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187
Query: 190 KP 191
Sbjct: 188 PK 189
Score = 89.7 bits (223), Expect = 8e-22
Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 6/147 (4%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE--FVDDRAFRGVT 104
IP + L + N I + K +F G+ N+ + + LE + AF G+
Sbjct: 116 EIPPNLPSSLVELRIHDNRIRKVPKGVF--SGLRNMNCIEMGGNPLENSGFEPGAFDGL- 172
Query: 105 NMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT 164
++ L +S+ L+ +P + L ++L HN I I + + + + QI
Sbjct: 173 KLNYLRISEAKLTGIPKDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231
Query: 165 IYSEAFYGIDKIDTLKLNGNKLASLKP 191
I + + + + L L+ NKL+ +
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSRVPA 258
Score = 87.4 bits (217), Expect = 5e-21
Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 11/151 (7%)
Query: 44 NFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
IP+ + L L N I ++ E L + + +L L ++ +++ + +
Sbjct: 183 KLTGIPKDLPETLNELHLDHNKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGSLSFL 240
Query: 104 TNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQST------PGIRYID 156
+ EL L +N LS VP+ + + L+ + L N I ++ F I
Sbjct: 241 PTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300
Query: 157 MSNCQI--HTIYSEAFYGIDKIDTLKLNGNK 185
+ N + + F + ++ K
Sbjct: 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
Score = 62.0 bits (151), Expect = 8e-12
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 105 NMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT 164
++ + SD L VP I P ++L +N I ++ F+ + + + N +I
Sbjct: 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92
Query: 165 IYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
I+ +AF + K+ L ++ N L + P
Sbjct: 93 IHEKAFSPLRKLQKLYISKNHLVEIPPNL 121
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 116 bits (292), Expect = 5e-32
Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 11/178 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP CSC + C + ++P GI L+L SN + L +F +T +
Sbjct: 1 CPSRCSCS----GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFD--KLTQL 54
Query: 83 QKLYLRKCKLEFVD--DRAFRGVTNMDELDLSDNLLSTVPS-LIYIPYLKSINLAHNPIH 139
KL L L F ++ G T++ LDLS N + T+ S + + L+ ++ H+ +
Sbjct: 55 TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 114
Query: 140 QISSYS-FQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNK-LASLKPRTWS 195
Q+S +S F S + Y+D+S+ ++ F G+ ++ LK+ GN + P ++
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172
Score = 88.1 bits (219), Expect = 2e-21
Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 6/135 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRAFRGVTNMDELDLSDNL 115
LD+S + V IF G+++++ L + E F + N+ LDLS
Sbjct: 129 IYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186
Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGI 173
L + + + L+ +N++HN + ++ ++ ++ +D S I T +
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246
Query: 174 -DKIDTLKLNGNKLA 187
+ L L N A
Sbjct: 247 PSSLAFLNLTQNDFA 261
Score = 86.6 bits (215), Expect = 8e-21
Identities = 20/140 (14%), Positives = 59/140 (42%), Gaps = 4/140 (2%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN-L 115
+ LD +N+ + + + N+ L + + F G+++++ L ++ N
Sbjct: 104 EHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162
Query: 116 LSTVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGI 173
+ L ++L+ + Q+S +F S ++ ++MS+ ++ + + +
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222
Query: 174 DKIDTLKLNGNKLASLKPRT 193
+ + L + N + + K +
Sbjct: 223 NSLQVLDYSLNHIMTSKKQE 242
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 117 bits (295), Expect = 1e-31
Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 27/196 (13%)
Query: 1 MCHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLD 60
+ + + + AS +CP CSC + V C R +P+GI +T+ L+
Sbjct: 24 LTAQVWILCAAIAAAASAGPQNCPSVCSCSNQF--SKVVCTRRGLSEVPQGIPSNTRYLN 81
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
L NNI ++Q + F + +++ L L + + ++ AF G+ +++ L+L DN L+ +P
Sbjct: 82 LMENNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 121 SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLK 180
S +F+ +R + + N I +I S AF + + L
Sbjct: 140 S----------------------GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177
Query: 181 L-NGNKLASLKPRTWS 195
L KL + +
Sbjct: 178 LGELKKLEYISEGAFE 193
Score = 107 bits (270), Expect = 6e-28
Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDDRAFRGVTNMDELDLSDNL 115
+ L L +N I + F + ++ +L L + KLE++ + AF G+ N+ L+L
Sbjct: 150 RELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207
Query: 116 LSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK 175
+ +P+L + L+ + ++ N +I SF ++ + + N Q+ I AF G+
Sbjct: 208 IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267
Query: 176 IDTLKLNGNKLASLKPRTWS 195
+ L L N L+SL ++
Sbjct: 268 LVELNLAHNNLSSLPHDLFT 287
Score = 84.0 bits (208), Expect = 2e-19
Identities = 22/131 (16%), Positives = 58/131 (44%), Gaps = 7/131 (5%)
Query: 57 QVLDLSSNN-INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
LDL + + + F G+ N++ L L C ++ + + + ++EL++S N
Sbjct: 174 MRLDLGELKKLEYISEGAFE--GLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNH 229
Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGI 173
+ S + LK + + ++ + I +F + +++++ + ++ + F +
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289
Query: 174 DKIDTLKLNGN 184
+ L L+ N
Sbjct: 290 RYLVELHLHHN 300
Score = 71.7 bits (176), Expect = 4e-15
Identities = 25/99 (25%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 44 NFYTIPEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102
N +P L + L++S N+ ++ F + ++++KL++ ++ ++ AF G
Sbjct: 207 NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL--SSLKKLWVMNSQVSLIERNAFDG 264
Query: 103 VTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIH 139
+ ++ EL+L+ N LS++P ++ + YL ++L HNP +
Sbjct: 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 115 bits (290), Expect = 1e-30
Identities = 43/200 (21%), Positives = 88/200 (44%), Gaps = 30/200 (15%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLD--------------------- 60
CP C C + R V C + F +PEGI +T++LD
Sbjct: 2 GCPPRCECSAQD--RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLE 59
Query: 61 ---LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
L+ N ++ ++ F + N++ L LR +L+ + F G++N+ +LD+S+N +
Sbjct: 60 ELELNENIVSAVEPGAFN--NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 118 TVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK 175
+ + LKS+ + N + IS +F + + + C + +I +EA +
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177
Query: 176 IDTLKLNGNKLASLKPRTWS 195
+ L+L + +++ ++
Sbjct: 178 LIVLRLRHLNINAIRDYSFK 197
Score = 99.0 bits (247), Expect = 1e-24
Identities = 26/139 (18%), Positives = 62/139 (44%), Gaps = 4/139 (2%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L L N+ + E + + L LR + + D +F+ + + L++S
Sbjct: 155 EQLTLEKCNLTSIPTEALSHL--HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Query: 117 STV--PSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGID 174
P+ +Y L S+++ H + + + + +R++++S I TI + +
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272
Query: 175 KIDTLKLNGNKLASLKPRT 193
++ ++L G +LA ++P
Sbjct: 273 RLQEIQLVGGQLAVVEPYA 291
Score = 94.4 bits (235), Expect = 5e-23
Identities = 33/142 (23%), Positives = 69/142 (48%), Gaps = 6/142 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LD+S N I +L +F + N++ L + L ++ RAF G+ ++++L L L
Sbjct: 107 TKLDISENKIVILLDYMF--QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164
Query: 117 STVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMS-NCQIHTIYSEAFYGI 173
+++P +L ++ L + L H I+ I YSF+ ++ +++S + T+ YG+
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224
Query: 174 DKIDTLKLNGNKLASLKPRTWS 195
+ +L + L ++
Sbjct: 225 -NLTSLSITHCNLTAVPYLAVR 245
Score = 88.6 bits (220), Expect = 5e-21
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 4/132 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VL++S L N+ L + C L V A R + + L+LS N +
Sbjct: 203 KVLEISHWPYLDTMTPNCLYG--LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260
Query: 117 STVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGID 174
ST+ L + L+ I L + + Y+F+ +R +++S Q+ T+ F+ +
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320
Query: 175 KIDTLKLNGNKL 186
++TL L+ N L
Sbjct: 321 NLETLILDSNPL 332
Score = 73.2 bits (180), Expect = 1e-15
Identities = 15/113 (13%), Positives = 42/113 (37%), Gaps = 4/113 (3%)
Query: 53 DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
L+ L ++ N+ + + ++ L L + ++ + + E+ L
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHL--VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280
Query: 113 DNLLSTVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
L+ V + YL+ +N++ N + + F S + + + + +
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 116 bits (292), Expect = 1e-30
Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 6/175 (3%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
S C K +T C + IP + T+ L+ S N + +Q F ++
Sbjct: 2 TSSDQKCIEKEVN--KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRL--I 57
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPI 138
N+ L L +C++ ++ + F+ +D L L+ N L + +L LK + I
Sbjct: 58 NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117
Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
I + + + + + I +I + +K+ L N + L
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172
Score = 90.1 bits (224), Expect = 2e-21
Identities = 25/153 (16%), Positives = 63/153 (41%), Gaps = 6/153 (3%)
Query: 43 RNFYTIPEGIDLDT----QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR 98
+N I +G+ T + + + +F + +++ + L+K +
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272
Query: 99 AFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDM 157
F + + ELDL+ LS +PS + + LK + L+ N + S + P + ++ +
Sbjct: 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332
Query: 158 S-NCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
N + + + ++ + L L+ + + +
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETS 365
Score = 86.6 bits (215), Expect = 3e-20
Identities = 26/143 (18%), Positives = 60/143 (41%), Gaps = 6/143 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ LDLS ++I ++++Q L L + + AF+ ++ LDL+ L
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412
Query: 117 STVPS---LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI---YSEAF 170
+ + LK +NL+H+ + S F P ++++++ + +
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472
Query: 171 YGIDKIDTLKLNGNKLASLKPRT 193
+ +++ L L+ L+S+
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQHA 495
Score = 86.6 bits (215), Expect = 3e-20
Identities = 29/142 (20%), Positives = 62/142 (43%), Gaps = 7/142 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
++LDL+ + V + Q + ++ L L L+ ++ F G+ + L+L N
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQ-NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461
Query: 117 STVP-----SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
SL + L+ + L+ + I ++F S + ++D+S+ ++ + EA
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521
Query: 172 GIDKIDTLKLNGNKLASLKPRT 193
+ I L L N ++ + P
Sbjct: 522 HLKGI-YLNLASNHISIILPSL 542
Score = 85.5 bits (212), Expect = 7e-20
Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 8/145 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR-AFRGVTNMDELDLSDNL 115
Q L+LS N L+ E F ++ L L +L+ D + F+ + + L+LS +L
Sbjct: 379 QSLNLSYNEPLSLKTEAF--KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436
Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQI---SSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
L +P L+ +NL N + + S Q+ + + +S C + +I AF
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496
Query: 171 YGIDKIDTLKLNGNKLASLKPRTWS 195
+ ++ + L+ N+L S S
Sbjct: 497 TSLKMMNHVDLSHNRLTSSSIEALS 521
Score = 83.5 bits (207), Expect = 3e-19
Identities = 27/145 (18%), Positives = 63/145 (43%), Gaps = 8/145 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVTNMDELDLSDNL 115
+ L LS+N L + ++ L ++ K + + N+ ELDLS +
Sbjct: 304 KKLVLSANKFENLCQISASNF--PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361
Query: 116 LSTVP----SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE-AF 170
+ T L + +L+S+NL++N + + +F+ P + +D++ ++ ++ F
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421
Query: 171 YGIDKIDTLKLNGNKLASLKPRTWS 195
+ + L L+ + L + +
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFD 446
Score = 78.5 bits (194), Expect = 2e-17
Identities = 23/140 (16%), Positives = 51/140 (36%), Gaps = 7/140 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L++N + + + G ++ L+ + + +D ++ L L N +
Sbjct: 84 DTLVLTANPLIFMAETALS--GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141
Query: 117 STVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIR--YIDMSNCQIHTIYSEAFYG 172
S++ LK ++ +N IH +S S ++++ I I AF
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201
Query: 173 IDKIDTLKLNGNKLASLKPR 192
+L G + + +
Sbjct: 202 A-VFQSLNFGGTQNLLVIFK 220
Score = 77.4 bits (191), Expect = 4e-17
Identities = 27/135 (20%), Positives = 64/135 (47%), Gaps = 8/135 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR---AFRGVTNMDELDLSD 113
+VL+LS + +++ +++F G+ +Q L L+ + + + + + ++ L LS
Sbjct: 428 KVLNLSHSLLDISSEQLFD--GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485
Query: 114 NLLSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
LS++ + + + ++L+HN + S + GI Y+++++ I I
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP 544
Query: 172 GIDKIDTLKLNGNKL 186
+ + T+ L N L
Sbjct: 545 ILSQQRTINLRQNPL 559
Score = 70.8 bits (174), Expect = 9e-15
Identities = 27/139 (19%), Positives = 42/139 (30%), Gaps = 7/139 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VLD +N I+ L KE + L L + ++ AF L+
Sbjct: 156 KVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN 214
Query: 117 STVP----SLIYIPYLKSINLAHNPIHQISSYSFQSTPG--IRYIDMSNCQIHTIYSEAF 170
V I L IS F+ + I++ I S F
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF 274
Query: 171 YGIDKIDTLKLNGNKLASL 189
+ + L L L+ L
Sbjct: 275 HCFSGLQELDLTATHLSEL 293
Score = 70.8 bits (174), Expect = 9e-15
Identities = 18/160 (11%), Positives = 47/160 (29%), Gaps = 28/160 (17%)
Query: 54 LDTQVLDLSSNNINVLQKEIFLQM-----------------------GITNIQKLYLRKC 90
L+L+ N+I ++ F I ++
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238
Query: 91 KLEFVDDRAFRGVTNMD--ELDLSDNLLSTVP--SLIYIPYLKSINLAHNPIHQISSYSF 146
E + F G+ M ++L + + + L+ ++L + ++ S
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GL 297
Query: 147 QSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKL 186
++ + +S + + + + L + GN
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337
Score = 67.7 bits (166), Expect = 9e-14
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 4/110 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQ-MGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
Q L+L N+ + + ++ L L C L +D AF + M+ +DLS N
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511
Query: 116 LSTVPSLIYIPYLKS--INLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
L++ + +LK +NLA N I I R I++ +
Sbjct: 512 LTSSSIEA-LSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560
Score = 48.9 bits (117), Expect = 2e-07
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 5/94 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+DLS N + E + L L + + ++ ++L N L
Sbjct: 503 NHVDLSHNRLTSSSIEALSHL---KGIYLNLASNHISIILPSLLPILSQQRTINLRQNPL 559
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTP 150
S I +L+ + ++ P
Sbjct: 560 DCTCSN--IYFLEWYKENMQKLEDTEDTLCENPP 591
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 107 bits (269), Expect = 2e-29
Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 7/166 (4%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
+CP C C+ TV+C ++ IPE I T L L++N VL+ + +
Sbjct: 3 LACPEKCRCEGT----TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFK-KLP 57
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPI 138
++K+ K+ +++ AF G + ++E+ L+ N L V ++ + LK++ L N I
Sbjct: 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117
Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN 184
+ + SF +R + + + QI T+ AF + + TL L N
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 109 bits (275), Expect = 3e-29
Identities = 42/195 (21%), Positives = 85/195 (43%), Gaps = 9/195 (4%)
Query: 5 FILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSN 64
+++ V + + S ++S SC + + +IP G+ + LDLS+N
Sbjct: 6 WMVWVLGVIISLSKEESSNQASLSC---DRNGICKGSSGSLNSIPSGLTEAVKSLDLSNN 62
Query: 65 NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--L 122
I + N+Q L L + +++ +F + +++ LDLS N LS + S
Sbjct: 63 RITYISNSDLQ--RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWF 120
Query: 123 IYIPYLKSINLAHNPIHQISSYS-FQSTPGIRYIDMSNC-QIHTIYSEAFYGIDKIDTLK 180
+ L +NL NP + S F ++ + + N I + F G+ ++ L+
Sbjct: 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180
Query: 181 LNGNKLASLKPRTWS 195
++ + L S +P++
Sbjct: 181 IDASDLQSYEPKSLK 195
Score = 77.9 bits (192), Expect = 2e-17
Identities = 20/140 (14%), Positives = 54/140 (38%), Gaps = 13/140 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L++ ++++ + + I N+ L L + + + ++++ L+L D L
Sbjct: 177 EELEIDASDLQSYEPKSL--KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234
Query: 117 STVP----------SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
T SLI +++ + + Q+ G+ ++ S Q+ ++
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQLKSVP 293
Query: 167 SEAFYGIDKIDTLKLNGNKL 186
F + + + L+ N
Sbjct: 294 DGIFDRLTSLQKIWLHTNPW 313
Score = 64.8 bits (158), Expect = 7e-13
Identities = 21/144 (14%), Positives = 50/144 (34%), Gaps = 12/144 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDDRAFRGVTNMDELDLSDNL 115
L+L N L + +T +Q L + + + F G+T ++EL++ +
Sbjct: 127 TFLNLLGNPYKTLGETSLFS-HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185
Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN--------CQIHTI 165
L + SL I + + L + T + +++ + ++ T
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245
Query: 166 YSEAFYGIDKIDTLKLNGNKLASL 189
+ + +K+ L +
Sbjct: 246 ETNSLIKKFTFRNVKITDESLFQV 269
Score = 44.3 bits (105), Expect = 8e-06
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 54 LDTQVLDLSSNNINVLQKEIFLQ-MGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
L+ + DL + + + L + + + + L F + ++ + EL+ S
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL-FQVMKLLNQISGLLELEFS 285
Query: 113 DNLLSTVPSLIY--IPYLKSINLAHNPIH 139
N L +VP I+ + L+ I L NP
Sbjct: 286 RNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 105 bits (265), Expect = 2e-28
Identities = 33/170 (19%), Positives = 78/170 (45%), Gaps = 9/170 (5%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
T +C++ NFY IP+ + T+ LDLS N + L F +Q L
Sbjct: 5 EVV----PNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLD 58
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNPIHQISSY 144
L +C+++ ++D A++ ++++ L L+ N + ++ + L+ + + + ++
Sbjct: 59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118
Query: 145 SFQSTPGIRYIDMSNCQIHTI-YSEAFYGIDKIDTLKLNGNKLASLKPRT 193
++ +++++ I + E F + ++ L L+ NK+ S+
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
Score = 60.4 bits (147), Expect = 2e-11
Identities = 28/148 (18%), Positives = 64/148 (43%), Gaps = 13/148 (8%)
Query: 47 TIPEGI--DL-DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFV-DDRAFRG 102
++ G L Q L N+ L+ + +++L + ++ F
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 103 VTNMDELDLSDNLLSTVP-----SLIYIPYLK-SINLAHNPIHQISSYSFQSTPGIRYID 156
+TN++ LDLS N + ++ L +P L S++L+ NP++ I +F+ ++ +
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELA 206
Query: 157 MSNCQIHTIYSEAFYGIDKIDTLKLNGN 184
+ Q+ ++ F + + + L+ N
Sbjct: 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 50.0 bits (120), Expect = 8e-08
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 57 QVLDLSSNNINVLQKEIF--LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
+ LDLSSN I + L L L + F+ AF+ + EL L N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTN 210
Query: 115 LLSTVPSLIY--IPYLKSINLAHNPIH 139
L +VP I+ + L+ I L NP
Sbjct: 211 QLKSVPDGIFDRLTSLQKIWLHTNPWD 237
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 100 bits (250), Expect = 1e-26
Identities = 34/166 (20%), Positives = 71/166 (42%), Gaps = 8/166 (4%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
CP C+C V+C + IP + + L N I V+ F
Sbjct: 3 LHCPAACTCS----NNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFS--PYK 56
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPI 138
++++ L ++ + AF+G+ +++ L L N ++ +P ++ + L+ + L N I
Sbjct: 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI 116
Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN 184
+ + +FQ + + + + ++ TI F + I T+ L N
Sbjct: 117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 50.0 bits (120), Expect = 6e-08
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 112 SDNLLSTVPSLIYIP-YLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
L+ +P+ +P + I L N I I +F +R ID+SN QI + +AF
Sbjct: 19 RGKGLTEIPT--NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76
Query: 171 YGIDKIDTLKLNGNKLASLKPRT 193
G+ +++L L GNK+ L
Sbjct: 77 QGLRSLNSLVLYGNKITELPKSL 99
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 104 bits (262), Expect = 2e-26
Identities = 28/160 (17%), Positives = 66/160 (41%), Gaps = 4/160 (2%)
Query: 36 RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFV 95
+C +P+ + + VL+L+ N + L F + + + L + + +
Sbjct: 7 EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRY--SQLTSLDVGFNTISKL 64
Query: 96 DDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIR 153
+ + + + L+L N LS + + + L ++L N I +I + F +
Sbjct: 65 EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124
Query: 154 YIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
+D+S+ + + ++ + L L+ NK+ +LK
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164
Score = 89.3 bits (222), Expect = 3e-21
Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 10/147 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q L L + + + N+ L L + ++D G+ ++ LDL N L
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516
Query: 117 STVPSLIYI----------PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
+ + +L +NL N +I F+ ++ ID+ ++T+
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576
Query: 167 SEAFYGIDKIDTLKLNGNKLASLKPRT 193
+ F + +L L N + S++ +
Sbjct: 577 ASVFNNQVSLKSLNLQKNLITSVEKKV 603
Score = 88.1 bits (219), Expect = 9e-21
Identities = 24/146 (16%), Positives = 64/146 (43%), Gaps = 7/146 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q L LS+N I L+ E ++++KL L +++ F + + L L++ L
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207
Query: 117 STVP-----SLIYIPYLKSINLAHNPIHQISSYSFQS--TPGIRYIDMSNCQIHTIYSEA 169
+ +++++L+++ + S+ +F + +D+S ++ + +++
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267
Query: 170 FYGIDKIDTLKLNGNKLASLKPRTWS 195
F + +++ L N + L +
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLH 293
Score = 87.7 bits (218), Expect = 1e-20
Identities = 28/144 (19%), Positives = 63/144 (43%), Gaps = 7/144 (4%)
Query: 57 QVLDLSSNNINV--LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
+ L LS++ ++ L E F+ + + + L L K K+ ++ AF + +++ LDL N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415
Query: 115 LLSTVP---SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI--YSEA 169
+ + + I L++N Q++ SF P ++ + + + +
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475
Query: 170 FYGIDKIDTLKLNGNKLASLKPRT 193
F + + L L+ N +A++
Sbjct: 476 FQPLRNLTILDLSNNNIANINDDM 499
Score = 86.6 bits (215), Expect = 3e-20
Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF-VDDRAFRGVTNMDELDLSDNL 115
+L+L+ N I+ ++ + F + +++ L L ++ + + +RG+ N+ E+ LS N
Sbjct: 384 HILNLTKNKISKIESDAF--SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441
Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQISSY--SFQSTPGIRYIDMSNCQIHTIYSEAFY 171
+ S +P L+ + L + + S FQ + +D+SN I I +
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501
Query: 172 GIDKIDTLKLNGNKLASLKPRTWS 195
G++K++ L L N LA L
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANP 525
Score = 86.6 bits (215), Expect = 3e-20
Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 6/141 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VL+L N ++ L + F TN+ +L+L ++ + + F N+ LDLS N L
Sbjct: 76 KVLNLQHNELSQLSDKTFAFC--TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133
Query: 117 STVP--SLIYIPYLKSINLAHNPIHQISSYSFQ--STPGIRYIDMSNCQIHTIYSEAFYG 172
S+ + + + L+ + L++N I + S + ++ +++S+ QI F+
Sbjct: 134 SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193
Query: 173 IDKIDTLKLNGNKLASLKPRT 193
I ++ L LN +L
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEK 214
Score = 86.2 bits (214), Expect = 5e-20
Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 11/141 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L LS++ ++ FL + TN+ L L L V + +F + ++ L N +
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284
Query: 117 STVP--SLIYIPYLKSINLAHN---------PIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ SL + ++ +NL + + +I +SFQ + +++M + I I
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344
Query: 166 YSEAFYGIDKIDTLKLNGNKL 186
S F G+ + L L+ +
Sbjct: 345 KSNMFTGLINLKYLSLSNSFT 365
Score = 82.4 bits (204), Expect = 9e-19
Identities = 32/151 (21%), Positives = 67/151 (44%), Gaps = 14/151 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR--AFRGVTNMDELDLSDN 114
+ LS N L + F + ++Q+L LR+ L+ VD F+ + N+ LDLS+N
Sbjct: 433 FEIYLSYNKYLQLTRNSFALV--PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490
Query: 115 LLSTVPS--LIYIPYLKSINLAHNPIHQISS--------YSFQSTPGIRYIDMSNCQIHT 164
++ + L + L+ ++L HN + ++ Y + + +++ +
Sbjct: 491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550
Query: 165 IYSEAFYGIDKIDTLKLNGNKLASLKPRTWS 195
I E F + ++ + L N L +L ++
Sbjct: 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581
Score = 79.3 bits (196), Expect = 1e-17
Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 9/146 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+S ++ + F + ++ L + + + F G+ N+ L LS++
Sbjct: 308 TKQSISLASLPKIDDFSFQWL--KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365
Query: 117 STVP------SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT-IYSEA 169
S + L +NL N I +I S +F + +D+ +I + +
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425
Query: 170 FYGIDKIDTLKLNGNKLASLKPRTWS 195
+ G++ I + L+ NK L +++
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFA 451
Score = 73.9 bits (182), Expect = 8e-16
Identities = 26/141 (18%), Positives = 61/141 (43%), Gaps = 13/141 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA--------FRGVTNMDE 108
+LDLS+NNI + ++ + ++ L L+ L + A +G++++
Sbjct: 483 TILDLSNNNIANINDDMLEGL--EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540
Query: 109 LDLSDNLLSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
L+L N +P + LK I+L N ++ + + F + ++ +++ I ++
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600
Query: 167 SEAFYGIDK-IDTLKLNGNKL 186
+ F + + L + N
Sbjct: 601 KKVFGPAFRNLTELDMRFNPF 621
Score = 65.0 bits (159), Expect = 9e-13
Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
+ + D S L+ VP + + +NL HN + ++ + +F + +D+ I
Sbjct: 4 VSHEVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62
Query: 164 TIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
+ E + + L L N+L+ L +T
Sbjct: 63 KLEPELCQKLPMLKVLNLQHNELSQLSDKT 92
Score = 59.2 bits (144), Expect = 7e-11
Identities = 17/86 (19%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+L+L SN + + E+F + ++ + L L + F ++ L+L NL+
Sbjct: 539 HILNLESNGFDEIPVEVFKDL--FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596
Query: 117 STVPSLIYIPYLKS---INLAHNPIH 139
++V ++ P ++ +++ NP
Sbjct: 597 TSVEKKVFGPAFRNLTELDMRFNPFD 622
Score = 38.4 bits (90), Expect = 8e-04
Identities = 8/69 (11%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 127 YLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKL 186
+ + +H + Q+ + +++++ Q+ + + F ++ +L + N +
Sbjct: 5 SHEVADCSHLKLTQVPDDLPTNI---TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 187 ASLKPRTWS 195
+ L+P
Sbjct: 62 SKLEPELCQ 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 99.3 bits (248), Expect = 8e-26
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 6/173 (3%)
Query: 19 TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMG 78
CSC K +V+C + IP I DT+ LDL SN ++ L + F
Sbjct: 4 LCKKDGGVCSCN--NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAF--HR 59
Query: 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHN 136
+T ++ LYL KL+ + F+ + N++ L ++DN L +P + + L + L N
Sbjct: 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119
Query: 137 PIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
+ + F S + Y+ + ++ ++ F + + L+L N+L +
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172
Score = 62.7 bits (153), Expect = 2e-12
Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 36 RTVECIDRNFYTIPEGI--DL-DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL 92
T+ D +P G+ L + L L N + L +F +T + L L +L
Sbjct: 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSLTKLTYLSLGYNEL 145
Query: 93 EFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTP 150
+ + F +T++ EL L +N L VP + + LK++ L +N + ++ +F S
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205
Query: 151 GIRYIDMSN 159
++ + +
Sbjct: 206 KLKMLQLQE 214
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 102 bits (255), Expect = 1e-25
Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 9/171 (5%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
SC + R+F +IP G+ + LDLS N I + N+Q L
Sbjct: 2 LSC---DASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRAC--ANLQVLI 56
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIHQIS-S 143
L+ ++ ++ AF + +++ LDLSDN LS++ S + LK +NL NP + +
Sbjct: 57 LKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116
Query: 144 YSFQSTPGIRYIDMSNC-QIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
F + ++ + + N I F G+ ++ L++ L + + ++
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167
Score = 76.3 bits (188), Expect = 1e-16
Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 10/130 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LD+S N + + ++ L L + V + + LD+S+N L
Sbjct: 390 TSLDISRNTFHPMPDSCQ---WPEKMRFLNLSSTGIRVVKTCIPQTLE---VLDVSNNNL 443
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
+ ++P L+ + ++ N + + S P + + +S Q+ ++ F + +
Sbjct: 444 DSFSL--FLPRLQELYISRNKLKTLPDASLF--PVLLVMKISRNQLKSVPDGIFDRLTSL 499
Query: 177 DTLKLNGNKL 186
+ L+ N
Sbjct: 500 QKIWLHTNPW 509
Score = 72.1 bits (177), Expect = 3e-15
Identities = 21/140 (15%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE---FVDDRAFRGVTNMDELDLSD 113
+ + + ++ + ++ + +++ L L + + + ++ L LS
Sbjct: 313 KRITVENSKVFLVPCSFSQHL--KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370
Query: 114 NLLSTVPSLIYI----PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
N L ++ I L S++++ N H + S Q +R++++S+ I + +
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTCI 429
Query: 170 FYGIDKIDTLKLNGNKLASL 189
++ L ++ N L S
Sbjct: 430 P---QTLEVLDVSNNNLDSF 446
Score = 68.6 bits (168), Expect = 5e-14
Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 11/122 (9%)
Query: 44 NFYTIPEGIDLDT--QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101
F+ +P+ + L+LSS I V++ I ++ L + L+
Sbjct: 398 TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP-----QTLEVLDVSNNNLDSFS----L 448
Query: 102 GVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQ 161
+ + EL +S N L T+P P L + ++ N + + F ++ I +
Sbjct: 449 FLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508
Query: 162 IH 163
Sbjct: 509 WD 510
Score = 59.7 bits (145), Expect = 6e-11
Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 7/142 (4%)
Query: 53 DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
D L I L + F + + + + V + + L +
Sbjct: 237 DESFNELLKLLRYILELSEVEFDDCTLNGL--GDFNPSESDVVSELGKVETVTIRRLHIP 294
Query: 113 DNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY---S 167
L S +Y + +K I + ++ + + Q + ++D+S + Y S
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354
Query: 168 EAFYGIDKIDTLKLNGNKLASL 189
+ TL L+ N L S+
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSM 376
Score = 56.7 bits (137), Expect = 6e-10
Identities = 15/137 (10%), Positives = 52/137 (37%), Gaps = 6/137 (4%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
+ + +VL E F + + + L ++EF D + + + + S++ + +
Sbjct: 225 MKKLAFRGSVLTDESF--NELLKLLRYILELSEVEFDDCT----LNGLGDFNPSESDVVS 278
Query: 119 VPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDT 178
+ ++ +++ + S + ++ I + N ++ + + ++
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338
Query: 179 LKLNGNKLASLKPRTWS 195
L L+ N + + +
Sbjct: 339 LDLSENLMVEEYLKNSA 355
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 99.5 bits (248), Expect = 2e-25
Identities = 35/178 (19%), Positives = 68/178 (38%), Gaps = 13/178 (7%)
Query: 23 CPLG-CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
C C C R C + IP + + L + V+QK F G +
Sbjct: 2 CHHRICHCS----NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAF--SGFGD 55
Query: 82 IQKLYLRKCK-LEFVDDRAFRGVTNMDELDLSD-NLLSTVPS--LIYIPYLKSINLAHNP 137
++K+ + + LE ++ F + + E+ + N L + +P L+ + +++
Sbjct: 56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115
Query: 138 IHQISSYSFQSTPGIRYIDMS-NCQIHTIYSEAFYGI-DKIDTLKLNGNKLASLKPRT 193
I + + +D+ N IHTI +F G+ + L LN N + +
Sbjct: 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA 173
Score = 67.2 bits (164), Expect = 1e-13
Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 6/133 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVT-NMDELDLSDN 114
Q L +S+ I L + L ++ + ++ +F G++ L L+ N
Sbjct: 107 QYLLISNTGIKHLPDVHKIHS--LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164
Query: 115 LLSTVPSLI--YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
+ + + + +N + ++ + F G +D+S +IH++ S
Sbjct: 165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224
Query: 173 IDKIDTLKLNGNK 185
+ K+ K
Sbjct: 225 LKKLRARSTYNLK 237
Score = 51.4 bits (123), Expect = 3e-08
Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)
Query: 51 GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110
G+ ++ +L L+ N I + F G + LE + + F G + LD
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAF--NGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208
Query: 111 LSDNLLSTVPS--LIYIPYLKSINLAHNPIHQISSY-SFQSTPGIRYIDMSN 159
+S + ++PS L + L++ + + + + + + ++
Sbjct: 209 ISRTRIHSLPSYGLENLKKLRARST-----YNLKKLPTLEKLVALMEASLTY 255
Score = 50.6 bits (121), Expect = 6e-08
Identities = 11/81 (13%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Query: 56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
++ +NN+ L ++F G + L + + ++ + + +
Sbjct: 180 DELNLSDNNNLEELPNDVF--HGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YN 235
Query: 116 LSTVPSLIYIPYLKSINLAHN 136
L +P+L + L +L +
Sbjct: 236 LKKLPTLEKLVALMEASLTYP 256
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 96.2 bits (240), Expect = 6e-25
Identities = 32/180 (17%), Positives = 71/180 (39%), Gaps = 13/180 (7%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
C C + ++ IP + TQ L L ++ + F +
Sbjct: 2 GCSSPPCEC---HQEEDFRVTCKDIQRIP-SLPPSTQTLKLIETHLRTIPSHAF--SNLP 55
Query: 81 NIQKLYLRK-CKLEFVDDRAFRGVTNMDELDLSDN-LLSTVPS--LIYIPYLKSINLAHN 136
NI ++Y+ L+ ++ +F ++ + +++ + L+ + L +P LK + + +
Sbjct: 56 NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115
Query: 137 PIHQISSYSF-QSTPGIRYIDMS-NCQIHTIYSEAFYGIDK-IDTLKLNGNKLASLKPRT 193
+ + ST ++++ N + +I AF G+ TLKL N S++
Sbjct: 116 GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA 175
Score = 54.6 bits (132), Expect = 1e-09
Identities = 19/124 (15%), Positives = 45/124 (36%), Gaps = 6/124 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVTNM-DELDLSDN 114
+ L + + + + + L + + + AF+G+ N L L +N
Sbjct: 108 KFLGIFNTGLKMFPDLTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166
Query: 115 LLSTVPSLIYI-PYLKSINLAHNP-IHQISSYSFQSTP-GIRYIDMSNCQIHTIYSEAFY 171
++V + L ++ L N + I +F G +D+S + + S+
Sbjct: 167 GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE 226
Query: 172 GIDK 175
+ +
Sbjct: 227 HLKE 230
Score = 50.4 bits (121), Expect = 4e-08
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRAFRG-VTNMDELDLSD 113
T L L +N +Q F T + +YL K K L +D AF G + LD+S
Sbjct: 158 TLTLKLYNNGFTSVQGYAFNG---TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214
Query: 114 NLLSTVPS--LIYIPYLKSINL 133
++ +PS L ++ L + N
Sbjct: 215 TSVTALPSKGLEHLKELIARNT 236
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 99.6 bits (248), Expect = 9e-25
Identities = 30/159 (18%), Positives = 66/159 (41%), Gaps = 5/159 (3%)
Query: 38 VECIDRNFYTIPEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
++ ++ Y E I L+ +++ ++ + L + ++ L L ++E +D
Sbjct: 34 IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF--RQVELLNLNDLQIEEID 91
Query: 97 DRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRY 154
AF + +L + N + +P +P L + L N + + F +TP +
Sbjct: 92 TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151
Query: 155 IDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
+ MSN + I + F + L+L+ N+L +
Sbjct: 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL 190
Score = 90.0 bits (223), Expect = 2e-21
Identities = 28/137 (20%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
++L+L+ I + F IQKLY+ + ++ F+ V + L L N L
Sbjct: 78 ELLNLNDLQIEEIDTYAFAYA--HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135
Query: 117 STVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGID 174
S++P P L ++++++N + +I +FQ+T ++ + +S+ ++ +
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI---P 192
Query: 175 KIDTLKLNGNKLASLKP 191
+ ++ N L++L
Sbjct: 193 SLFHANVSYNLLSTLAI 209
Score = 81.9 bits (202), Expect = 1e-18
Identities = 32/152 (21%), Positives = 65/152 (42%), Gaps = 27/152 (17%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L +S+NN+ ++ + F T++Q L L +L VD + ++S NLL
Sbjct: 150 TTLSMSNNNLERIEDDTF--QATTSLQNLQLSSNRLTHVDLSLIPSLF---HANVSYNLL 204
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQS-------------------TPGIRYIDM 157
ST+ I ++ ++ +HN I+ + PG+ +D+
Sbjct: 205 STLAIPI---AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDL 261
Query: 158 SNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
S ++ I F + +++ L ++ N+L +L
Sbjct: 262 SYNELEKIMYHPFVKMQRLERLYISNNRLVAL 293
Score = 81.1 bits (200), Expect = 2e-18
Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 11/135 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
++S N ++ L I ++ +L + V +T L L N L
Sbjct: 195 FHANVSYNLLSTLAIPIAVE-------ELDASHNSINVVRGPVNVELT---ILKLQHNNL 244
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
+ L+ P L ++L++N + +I + F + + +SN ++ + + I +
Sbjct: 245 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTL 303
Query: 177 DTLKLNGNKLASLKP 191
L L+ N L ++
Sbjct: 304 KVLDLSHNHLLHVER 318
Score = 79.2 bits (195), Expect = 1e-17
Identities = 30/166 (18%), Positives = 65/166 (39%), Gaps = 24/166 (14%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQM-----------------GITNIQKLYLRK 89
T+ I + + LD S N+INV++ + +++ + ++ L
Sbjct: 206 TLAIPIAV--EELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSY 263
Query: 90 CKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI-YIPYLKSINLAHNPIHQISSYSFQS 148
+LE + F + ++ L +S+N L + IP LK ++L+HN + + Q
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ- 322
Query: 149 TPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW 194
+ + + + I T+ + + + L+ N R
Sbjct: 323 FDRLENLYLDHNSIVTLKLSTHHTLKNLT---LSHNDWDCNSLRAL 365
Score = 67.3 bits (164), Expect = 2e-13
Identities = 22/156 (14%), Positives = 46/156 (29%), Gaps = 22/156 (14%)
Query: 38 VECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97
V+ + I + D D+ + F + + N + + + + +
Sbjct: 9 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 68
Query: 98 RAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDM 157
++ +NL I +I +Y+F I+ + M
Sbjct: 69 ALLDSFRQ----------------------VELLNLNDLQIEEIDTYAFAYAHTIQKLYM 106
Query: 158 SNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
I + F + + L L N L+SL
Sbjct: 107 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 142
Score = 50.3 bits (120), Expect = 9e-08
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 6/92 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VLDLS N++ +++ ++ LYL + + + L LS N
Sbjct: 304 KVLDLSHNHLLHVERNQP---QFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDW 357
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQS 148
+ + H Y +
Sbjct: 358 DCNSLRALFRNVARPAVDDADQHCKIDYQLEH 389
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 98.2 bits (245), Expect = 1e-24
Identities = 30/159 (18%), Positives = 66/159 (41%), Gaps = 5/159 (3%)
Query: 38 VECIDRNFYTIPEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
++ ++ Y E I L+ +++ ++ + L + ++ L L ++E +D
Sbjct: 28 IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF--RQVELLNLNDLQIEEID 85
Query: 97 DRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRY 154
AF + +L + N + +P +P L + L N + + F +TP +
Sbjct: 86 TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145
Query: 155 IDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
+ MSN + I + F + L+L+ N+L +
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL 184
Score = 91.3 bits (227), Expect = 3e-22
Identities = 28/137 (20%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
++L+L+ I + F IQKLY+ + ++ F+ V + L L N L
Sbjct: 72 ELLNLNDLQIEEIDTYAFAYA--HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129
Query: 117 STVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGID 174
S++P P L ++++++N + +I +FQ+T ++ + +S+ ++ +
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI---P 186
Query: 175 KIDTLKLNGNKLASLKP 191
+ ++ N L++L
Sbjct: 187 SLFHANVSYNLLSTLAI 203
Score = 81.2 bits (201), Expect = 1e-18
Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 25/151 (16%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L +S+NN+ ++ + F T++Q L L +L VD + ++S NLL
Sbjct: 144 TTLSMSNNNLERIEDDTF--QATTSLQNLQLSSNRLTHVDLSLIPSLF---HANVSYNLL 198
Query: 117 STVPSLIYI------------------PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMS 158
ST+ I + L + L HN + + + PG+ +D+S
Sbjct: 199 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLS 256
Query: 159 NCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
++ I F + +++ L ++ N+L +L
Sbjct: 257 YNELEKIMYHPFVKMQRLERLYISNNRLVAL 287
Score = 79.3 bits (196), Expect = 6e-18
Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 11/135 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
++S N ++ L I ++ +L + V +T L L N L
Sbjct: 189 FHANVSYNLLSTLAIPIAVE-------ELDASHNSINVVRGPVNVELT---ILKLQHNNL 238
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
+ L+ P L ++L++N + +I + F + + +SN ++ + + I +
Sbjct: 239 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTL 297
Query: 177 DTLKLNGNKLASLKP 191
L L+ N L ++
Sbjct: 298 KVLDLSHNHLLHVER 312
Score = 78.2 bits (193), Expect = 2e-17
Identities = 30/166 (18%), Positives = 65/166 (39%), Gaps = 24/166 (14%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQ-----------------MGITNIQKLYLRK 89
T+ I + + LD S N+INV++ + ++ + + ++ L
Sbjct: 200 TLAIPIAV--EELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSY 257
Query: 90 CKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQS 148
+LE + F + ++ L +S+N L + IP LK ++L+HN + + Q
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ- 316
Query: 149 TPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW 194
+ + + + I T+ + + + L+ N R
Sbjct: 317 FDRLENLYLDHNSIVTLKLSTHHTLKNLT---LSHNDWDCNSLRAL 359
Score = 68.5 bits (168), Expect = 4e-14
Identities = 22/156 (14%), Positives = 46/156 (29%), Gaps = 22/156 (14%)
Query: 38 VECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97
V+ + I + D D+ + F + + N + + + + +
Sbjct: 3 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 62
Query: 98 RAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDM 157
++ +NL I +I +Y+F I+ + M
Sbjct: 63 ALLDSFRQ----------------------VELLNLNDLQIEEIDTYAFAYAHTIQKLYM 100
Query: 158 SNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
I + F + + L L N L+SL
Sbjct: 101 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 136
Score = 50.4 bits (121), Expect = 6e-08
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 6/92 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VLDLS N++ +++ ++ LYL + + + L LS N
Sbjct: 298 KVLDLSHNHLLHVERNQP---QFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDW 351
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQS 148
+ + H Y +
Sbjct: 352 DCNSLRALFRNVARPAVDDADQHCKIDYQLEH 383
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 96.3 bits (240), Expect = 1e-23
Identities = 34/168 (20%), Positives = 80/168 (47%), Gaps = 7/168 (4%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C T +C++ NFY IP+ + T+ LDLS N + L F +Q L
Sbjct: 3 CVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSF--PELQVLD 58
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPIHQISSY 144
L +C+++ ++D A++ ++++ L L+ N + ++ + + L+ + + + ++
Sbjct: 59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118
Query: 145 SFQSTPGIRYIDMSNCQIHTI-YSEAFYGIDKIDTLKLNGNKLASLKP 191
++ +++++ I + E F + ++ L L+ NK+ S+
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166
Score = 78.9 bits (195), Expect = 1e-17
Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 7/143 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR-AFRGVTNMDELDLSDNL 115
+ LDLS N + + +G+ ++ L + L+ + + F + N+ LD+S
Sbjct: 376 KYLDLSFNGVITMSSNF---LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 116 LSTVP--SLIYIPYLKSINLAHNPIH-QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
+ L+ + +A N F + ++D+S CQ+ + AF
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 173 IDKIDTLKLNGNKLASLKPRTWS 195
+ + L ++ N SL +
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYK 515
Score = 77.0 bits (190), Expect = 7e-17
Identities = 22/141 (15%), Positives = 62/141 (43%), Gaps = 6/141 (4%)
Query: 57 QVLDLSSNNINVL-QKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
+ LD +N+ + + +FL + N+ L + + F G+++++ L ++ N
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSL--RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 116 LSTVP---SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
+ L ++L+ + Q+S +F S ++ ++MS+ ++ + +
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516
Query: 173 IDKIDTLKLNGNKLASLKPRT 193
++ + L + N + + K +
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQE 537
Score = 75.5 bits (186), Expect = 2e-16
Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 6/134 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFVDDRAFRGVTNMDELDLSDNL 115
LD+S + V IF G+++++ L + E F + N+ LDLS
Sbjct: 424 IYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGI 173
L + + + L+ +N++HN + ++ ++ ++ +D S I T +
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541
Query: 174 -DKIDTLKLNGNKL 186
+ L L N
Sbjct: 542 PSSLAFLNLTQNDF 555
Score = 72.0 bits (177), Expect = 3e-15
Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 10/137 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L S I ++ + Q L L CK + ++ L + N
Sbjct: 285 SSFSLVSVTIERVKDFSYN----FGWQHLELVNCKFGQFPTLKLK---SLKRLTFTSNKG 337
Query: 117 STVPSLIYIPYLKSINLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGID 174
S + +P L+ ++L+ N + S S T ++Y+D+S + T+ S F G++
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLE 396
Query: 175 KIDTLKLNGNKLASLKP 191
+++ L + L +
Sbjct: 397 QLEHLDFQHSNLKQMSE 413
Score = 71.6 bits (176), Expect = 4e-15
Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 10/137 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L+ N I L F + +++QKL + L +++ + + EL+++ NL+
Sbjct: 79 STLILTGNPIQSLALGAFSGL--SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 117 STVPSLIYI---PYLKSINLAHNPIHQISSYSFQSTPGIRY----IDMSNCQIHTIYSEA 169
+ Y L+ ++L+ N I I + + +D+S ++ I A
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 170 FYGIDKIDTLKLNGNKL 186
F I ++ L L N
Sbjct: 197 FKEI-RLHKLTLRNNFD 212
Score = 57.7 bits (140), Expect = 2e-10
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LDLS + L F ++++Q L + +D ++ + ++ LD S N +
Sbjct: 473 TFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
Query: 117 STVP--SLIYIPY-LKSINLAHNPIH 139
T L + P L +NL N
Sbjct: 531 MTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 56.6 bits (137), Expect = 7e-10
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
+ +P + K+++L+ NP+ + SYSF S P ++ +D+S C+I TI
Sbjct: 11 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69
Query: 168 EAFYGIDKIDTLKLNGNKLASLKPRT 193
A+ + + TL L GN + SL
Sbjct: 70 GAYQSLSHLSTLILTGNPIQSLALGA 95
Score = 55.4 bits (134), Expect = 2e-09
Identities = 25/158 (15%), Positives = 55/158 (34%), Gaps = 14/158 (8%)
Query: 44 NFYTIPEGI--DLDTQVLDLSSNNINV-LQKEIFLQMGITNIQKLYLRK----CKLEFVD 96
I G ++ L L +N ++ + K + + +L L + LE D
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247
Query: 97 DRAFRGVTNMDELDLSDNLLSTVPSLI-----YIPYLKSINLAHNPIHQISSYSFQSTPG 151
A G+ N+ + L I + + S +L I ++ +S+ G
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--G 305
Query: 152 IRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
+++++ NC+ + + ++ G S
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343
Score = 51.6 bits (124), Expect = 4e-08
Identities = 22/162 (13%), Positives = 51/162 (31%), Gaps = 28/162 (17%)
Query: 56 TQVLDLSSNNINVLQKEIFLQMG-ITNIQKLYLRKCKLEFVDD------RAFRGVTNMDE 108
+V L + + L + + +L ++D F +TN+
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286
Query: 109 LDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISS-------------------YSFQST 149
L + V Y + + L + Q + +S
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346
Query: 150 PGIRYIDMSNCQIHTIY--SEAFYGIDKIDTLKLNGNKLASL 189
P + ++D+S + S++ +G + L L+ N + ++
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 95.5 bits (238), Expect = 3e-23
Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 28/169 (16%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
P T +C+D+ +P+ I T+ +DLS N + +L+ F + +
Sbjct: 5 NPCIEVVP----NITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNF--SEL 58
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQIS 142
Q L L +C++E ++D+A+ G+ + L ++ L NPI S
Sbjct: 59 QWLDLSRCEIETIEDKAWHGLHH----------------------LSNLILTGNPIQSFS 96
Query: 143 SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
SF + + ++ ++ S + + L + N + S K
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL 145
Score = 82.8 bits (205), Expect = 5e-19
Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 5/133 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFVDDRAFRGVTNMDELDLSDNL 115
LD+S N + IFL + T++ L + + F TN+ LDLS
Sbjct: 427 LYLDISYTNTKIDFDGIFLGL--TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484
Query: 116 LSTVPSLI--YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGI 173
L + + + L+ +N++HN + + S + + +D S +I T +
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 544
Query: 174 DKIDTLKLNGNKL 186
+ L N +
Sbjct: 545 KSLAFFNLTNNSV 557
Score = 82.0 bits (203), Expect = 1e-18
Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 10/144 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L+ N I F + T+++ L + KL ++ + + +L+++ N +
Sbjct: 83 SNLILTGNPIQSFSPGSFSGL--TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140
Query: 117 STVPSLIYI---PYLKSINLAHNPIHQISSYSFQS----TPGIRYIDMSNCQIHTIYSEA 169
+ Y L ++L++N I I+ Q +DMS I I +A
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200
Query: 170 FYGIDKIDTLKLNGNKLASLKPRT 193
F GI K+ L L GN +S +T
Sbjct: 201 FQGI-KLHELTLRGNFNSSNIMKT 223
Score = 81.6 bits (202), Expect = 1e-18
Identities = 23/140 (16%), Positives = 56/140 (40%), Gaps = 4/140 (2%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q LD + + + + + + L + + D F G+T+++ L ++ N
Sbjct: 402 QHLDFQHSTLKRVTEFSAFL-SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460
Query: 117 STVP---SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGI 173
L ++L+ + QIS F + ++ ++MS+ + + S + +
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520
Query: 174 DKIDTLKLNGNKLASLKPRT 193
+ TL + N++ + K
Sbjct: 521 YSLSTLDCSFNRIETSKGIL 540
Score = 80.8 bits (200), Expect = 3e-18
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 7/143 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR-AFRGVTNMDELDLSDNL 115
+ LDLS N ++ MG+ +Q L + L+ V + AF + + LD+S
Sbjct: 379 RHLDLSFNGAIIMSANF---MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435
Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQ-ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
+ + L ++ +A N S F +T + ++D+S CQ+ I F
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495
Query: 173 IDKIDTLKLNGNKLASLKPRTWS 195
+ ++ L ++ N L L ++
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYN 518
Score = 80.1 bits (198), Expect = 6e-18
Identities = 25/138 (18%), Positives = 54/138 (39%), Gaps = 10/138 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L+ +I L+ Q L + +C+L+ + + L L+ N
Sbjct: 288 SAMSLAGVSIKYLEDVPKH----FKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKG 340
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQ--STPGIRYIDMSNCQIHTIYSEAFYGID 174
S + +P L ++L+ N + S+ T +R++D+S + S F G++
Sbjct: 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLE 399
Query: 175 KIDTLKLNGNKLASLKPR 192
++ L + L +
Sbjct: 400 ELQHLDFQHSTLKRVTEF 417
Score = 73.1 bits (180), Expect = 1e-15
Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 3/111 (2%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L ++ N+ TN+ L L KC+LE + F + + L++S N L
Sbjct: 451 NTLKMAGNSFKDNTLSNVFA-NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509
Query: 117 STVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ S Y + L +++ + N I + + +++N + I
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560
Score = 68.9 bits (169), Expect = 4e-14
Identities = 18/146 (12%), Positives = 49/146 (33%), Gaps = 11/146 (7%)
Query: 56 TQVLDLSSN------NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDEL 109
V L N+ + + I + I + L D F + N+ +
Sbjct: 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290
Query: 110 DLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
L+ + + + +S+++ Q+ + P ++ + ++ + +
Sbjct: 291 SLAGVSIKYLEDVPKHFKWQSLSIIRC---QLKQFPTLDLPFLKSLTLTMNKGSISFK-- 345
Query: 170 FYGIDKIDTLKLNGNKLASLKPRTWS 195
+ + L L+ N L+ ++S
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYS 371
Score = 63.9 bits (156), Expect = 2e-12
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 109 LDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
D LS VP I K+I+L+ NP+ + SYSF + ++++D+S C+I TI +
Sbjct: 16 YQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK 74
Query: 169 AFYGIDKIDTLKLNGNKLASLKPRT 193
A++G+ + L L GN + S P +
Sbjct: 75 AWHGLHHLSNLILTGNPIQSFSPGS 99
Score = 62.7 bits (153), Expect = 5e-12
Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 14/148 (9%)
Query: 57 QVLDLSSNNINVLQKEIF--LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
+DLS N I + L+ L + ++F+ D+AF+G + EL L N
Sbjct: 156 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGN 214
Query: 115 LLSTVP---SLIYIPYLKSINLAHN------PIHQISSYSFQSTPGIRY--IDMSNCQIH 163
S+ L + L L + + + ++
Sbjct: 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF 274
Query: 164 TIYSEAFYGIDKIDTLKLNGNKLASLKP 191
+ F+ + + + L G + L+
Sbjct: 275 SDDIVKFHCLANVSAMSLAGVSIKYLED 302
Score = 53.9 bits (130), Expect = 5e-09
Identities = 14/111 (12%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q+L++S NN+ L + Q+ ++ L ++E ++ +L++N +
Sbjct: 500 QLLNMSHNNLLFLDSSHYNQL--YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPG-----IRYIDMSNCQI 162
+ + +L+ + + + + + + + S C +
Sbjct: 558 ACICEH--QKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFNNSTCYM 606
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 93.7 bits (233), Expect = 1e-22
Identities = 29/135 (21%), Positives = 65/135 (48%), Gaps = 2/135 (1%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+NI + F + ++++ L L + ++ R F + ++ L+L+ N +
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302
Query: 117 STVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGID 174
+ + + + L+ +NL++N + ++ S +F P + YID+ I I + F ++
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362
Query: 175 KIDTLKLNGNKLASL 189
K+ TL L N L ++
Sbjct: 363 KLQTLDLRDNALTTI 377
Score = 88.7 bits (220), Expect = 6e-21
Identities = 41/199 (20%), Positives = 67/199 (33%), Gaps = 35/199 (17%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM--------- 77
CS R N +P+ ++ T+ L LS N I + F +
Sbjct: 2 CSFD----GRIAFYRFCNLTQVPQVLN-TTERLLLSFNYIRTVTASSFPFLEQLQLLELG 56
Query: 78 --------------GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--- 120
+ N++ L L K+ F+ AF+G+ ++ EL L LS
Sbjct: 57 SQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116
Query: 121 -SLIYIPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKID- 177
+ L ++L+ N I + SF ++ ID S+ QI + +
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176
Query: 178 -TLKLNGNKLASLKPRTWS 195
L N L S W
Sbjct: 177 SFFSLAANSLYSRVSVDWG 195
Score = 87.6 bits (217), Expect = 1e-20
Identities = 35/157 (22%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 53 DLDTQVLDLSSNNINVLQKEIFLQ----------MGITNIQKLYLRKCKLEFVDDRAFRG 102
++ ++LD+S N V F + +I ++ D F G
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262
Query: 103 V--TNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMS 158
+ +++ LDLS + ++ S + + LK +NLA+N I++I+ +F ++ +++S
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322
Query: 159 NCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTWS 195
+ +YS FYG+ K+ + L N +A ++ +T+
Sbjct: 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359
Score = 77.9 bits (192), Expect = 3e-17
Identities = 31/154 (20%), Positives = 61/154 (39%), Gaps = 21/154 (13%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
QVL+LS N + L F G+ + + L+K + + D+ F+ + + LDL DN L
Sbjct: 317 QVLNLSYNLLGELYSSNF--YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374
Query: 117 STVPSLIYIPYL-----------------KSINLAHNPIHQISSYSF-QSTPGIRYIDMS 158
+T+ + IP + I+L+ N + + F P ++ + ++
Sbjct: 375 TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434
Query: 159 NCQIHTIYSEA-FYGIDKIDTLKLNGNKLASLKP 191
+ + + ++ L L N L
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468
Score = 74.8 bits (184), Expect = 3e-16
Identities = 26/161 (16%), Positives = 55/161 (34%), Gaps = 22/161 (13%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN------MDELD 110
+ +D SSN I ++ + + + L L + N ++ LD
Sbjct: 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210
Query: 111 LSDNLLSTVP--------------SLIYIPYLKSINLAHNPIHQISSYSFQS--TPGIRY 154
+S N + SLI ++ + I +F +R+
Sbjct: 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270
Query: 155 IDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTWS 195
+D+S+ + ++ S F + + L L NK+ + +
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY 311
Score = 73.7 bits (181), Expect = 9e-16
Identities = 26/160 (16%), Positives = 63/160 (39%), Gaps = 11/160 (6%)
Query: 44 NFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA-FRG 102
N I+L ++ LS N + L FL + ++Q L L + +
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLL-RVPHLQILILNQNRFSSCSGDQTPSE 449
Query: 103 VTNMDELDLSDNLLSTVP-------SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYI 155
++++L L +N+L + +L+ + L HN ++ + F +R +
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509
Query: 156 DMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTWS 195
+++ ++ + ++ L ++ N+L + P +
Sbjct: 510 SLNSNRLTVLSHNDLPA--NLEILDISRNQLLAPNPDVFV 547
Score = 68.3 bits (167), Expect = 7e-14
Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 22/161 (13%)
Query: 57 QVLDLSSNNINVLQ-----KEIFL-QMGITNIQK-------LYLRKCKLEFVDDRAF-RG 102
Q LDL N + + +IFL + + K ++L + +LE +D F
Sbjct: 365 QTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR 424
Query: 103 VTNMDELDLSDNLLSTVPS---LIYIPYLKSINLAHNPIH-----QISSYSFQSTPGIRY 154
V ++ L L+ N S+ P L+ + L N + ++ F+ ++
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484
Query: 155 IDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTWS 195
+ +++ ++++ F + + L LN N+L L
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525
Score = 66.8 bits (163), Expect = 2e-13
Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQ---MGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113
+ L L N + + + G++++Q LYL L + F +T + L L+
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513
Query: 114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQS 148
N L+ + L+ ++++ N + + F S
Sbjct: 514 NRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVS 548
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 90.9 bits (226), Expect = 9e-22
Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 26/165 (15%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C T +C++ NFY IP+ + T+ LDLS N + L F +Q L
Sbjct: 3 CVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSF--PELQVLD 58
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSF 146
L +C+++ ++D A++ +++ L ++ L NPI ++ +F
Sbjct: 59 LSRCEIQTIEDGAYQSLSH----------------------LSTLILTGNPIQSLALGAF 96
Query: 147 QSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
++ + + ++ + + + L + N + S K
Sbjct: 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141
Score = 88.6 bits (220), Expect = 6e-21
Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 8/161 (4%)
Query: 36 RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFV 95
+ +E ++ F P + L +SN E+ L +++ L L + L F
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL----PSLEFLDLSRNGLSFK 362
Query: 96 D--DRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYS-FQSTPG 151
++ G T++ LDLS N + T+ S + L+ ++ H+ + Q+S +S F S
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422
Query: 152 IRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPR 192
+ Y+D+S+ ++ F G+ ++ LK+ GN
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Score = 81.7 bits (202), Expect = 2e-18
Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 7/139 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR-AFRGVTNMDELDLSDNL 115
+ LDLS N + + G+ ++ L + L+ + + F + N+ LD+S
Sbjct: 376 KYLDLSFNGVITMSSNFL---GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 116 LSTVPS--LIYIPYLKSINLAHNPIHQ-ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
+ + L+ + +A N + F + ++D+S CQ+ + AF
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 173 IDKIDTLKLNGNKLASLKP 191
+ + L + N+L S+
Sbjct: 493 LSSLQVLNMASNQLKSVPD 511
Score = 81.7 bits (202), Expect = 2e-18
Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 10/144 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L+ N I L F G++++QKL + L +++ + + EL+++ NL+
Sbjct: 79 STLILTGNPIQSLALGAFS--GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 117 STVP---SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRY----IDMSNCQIHTIYSEA 169
+ + L+ ++L+ N I I + + +D+S ++ I A
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 170 FYGIDKIDTLKLNGNKLASLKPRT 193
F I ++ L L N + +T
Sbjct: 197 FKEI-RLHKLTLRNNFDSLNVMKT 219
Score = 79.4 bits (196), Expect = 1e-17
Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 6/154 (3%)
Query: 47 TIPEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN 105
+DL + + LDLS N ++ G T+++ L L + + F G+
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQ 397
Query: 106 MDELDLSDNLLSTVPSLIYI---PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
++ LD + L + L ++++H + F + + M+
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 163 H-TIYSEAFYGIDKIDTLKLNGNKLASLKPRTWS 195
+ F + + L L+ +L L P ++
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491
Score = 79.0 bits (195), Expect = 1e-17
Identities = 20/133 (15%), Positives = 56/133 (42%), Gaps = 4/133 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ LD +N+ + + + N+ L + + F G+++++ L ++ N
Sbjct: 399 EHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 117 STVPS---LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGI 173
+ L ++L+ + Q+S +F S ++ ++M++ Q+ ++ F +
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517
Query: 174 DKIDTLKLNGNKL 186
+ + L+ N
Sbjct: 518 TSLQKIWLHTNPW 530
Score = 72.4 bits (178), Expect = 2e-15
Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 10/137 (7%)
Query: 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
+ L S I ++ + Q L L CK + ++ L + N
Sbjct: 283 NVSSFSLVSVTIERVKDFSYN----FGWQHLELVNCKFGQFPTLKLK---SLKRLTFTSN 335
Query: 115 LLSTVPSLIYIPYLKSINLAHNPIHQIS--SYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
S + +P L+ ++L+ N + S S T ++Y+D+S + T+ S F G
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLG 394
Query: 173 IDKIDTLKLNGNKLASL 189
+++++ L + L +
Sbjct: 395 LEQLEHLDFQHSNLKQM 411
Score = 71.7 bits (176), Expect = 5e-15
Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFVDDRAFRGVTNMDELDLSDNL 115
LD+S + V IF + ++++ L + E F + N+ LDLS
Sbjct: 424 IYLDISHTHTRVAFNGIFNGL--SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
L + + + L+ +N+A N + + F ++ I +
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
Score = 59.0 bits (143), Expect = 1e-10
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 110 DLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
+ +P + K+++L+ NP+ + SYSF S P ++ +D+S C+I TI A
Sbjct: 13 QCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71
Query: 170 FYGIDKIDTLKLNGNKLASLKPRT 193
+ + + TL L GN + SL
Sbjct: 72 YQSLSHLSTLILTGNPIQSLALGA 95
Score = 51.6 bits (124), Expect = 3e-08
Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 15/149 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQ--KLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
+ LDLSSN I + + + L L + F+ AF+ + +L L +N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNN 210
Query: 115 LLSTVPS---LIYIPYLKSINLA------HNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
S + + L+ L + + + + + + +
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270
Query: 166 YSE---AFYGIDKIDTLKLNGNKLASLKP 191
+ F + + + L + +K
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKD 299
Score = 51.3 bits (123), Expect = 5e-08
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LDLS + L F ++++Q L + +L+ V D F +T++ ++ L N
Sbjct: 473 TFLDLSQCQLEQLSPTAF--NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
Query: 117 STVPSLI 123
I
Sbjct: 531 DCSCPRI 537
Score = 47.4 bits (113), Expect = 9e-07
Identities = 25/155 (16%), Positives = 56/155 (36%), Gaps = 17/155 (10%)
Query: 47 TIPEGI--DLDTQVLDLSSNNINV-LQKEIFLQMGITNIQKLYLRK----CKLEFVDDRA 99
I G ++ L L +N ++ + K + + +L L + LE D A
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250
Query: 100 FRGVTNMDELDLSDNLLSTVPSLIY-----IPYLKSINLAHNPIHQISSYSFQSTPGIRY 154
G+ N+ + L I + + S +L I ++ +S+ G ++
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--GWQH 308
Query: 155 IDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
+++ NC+ + + ++ NK +
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLT---FTSNKGGNA 340
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 86.2 bits (214), Expect = 1e-20
Identities = 28/149 (18%), Positives = 62/149 (41%), Gaps = 5/149 (3%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG-VTN 105
+ + + L++N I +L+ + +Q L L+ +++ V+
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCR--SRVQYLDLKLNEIDTVNFAELAASSDT 170
Query: 106 MDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
++ L+L N + V + LK+++L+ N + + FQS G+ +I + N ++ I
Sbjct: 171 LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI 229
Query: 166 YSEAFYGIDKIDTLKLNGNKLASLKPRTW 194
+A ++ L GN R +
Sbjct: 230 -EKALRFSQNLEHFDLRGNGFHCGTLRDF 257
Score = 83.9 bits (208), Expect = 9e-20
Identities = 24/153 (15%), Positives = 58/153 (37%), Gaps = 18/153 (11%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
++ ++ +++ + N+++L L L + T ++ L+LS N+L
Sbjct: 13 KIEKVTDSSLKQALASLR--QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70
Query: 117 STVPSLIYIPYLKSINLAHNPIH----------------QISSYSFQSTPGIRYIDMSNC 160
L + L++++L +N + IS S G + I ++N
Sbjct: 71 YETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN 130
Query: 161 QIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
+I + ++ L L N++ ++
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163
Score = 82.3 bits (204), Expect = 4e-19
Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 13/146 (8%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
+ G + + L ++NNI+ + + +YL K+ + D + +
Sbjct: 94 ELLVGPSI--ETLHAANNNISRVSCSRG-----QGKKNIYLANNKITMLRDLDEGCRSRV 146
Query: 107 DELDLSDNLLSTVPSLIYI---PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
LDL N + TV L+ +NL +N I+ + ++ +D+S+ ++
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA 204
Query: 164 TIYSEAFYGIDKIDTLKLNGNKLASL 189
+ F + + L NKL +
Sbjct: 205 FM-GPEFQSAAGVTWISLRNNKLVLI 229
Score = 65.4 bits (160), Expect = 4e-13
Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 15/135 (11%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L+L N I ++ ++ ++ L L KL F+ F+ + + L +N L
Sbjct: 172 EHLNLQYNFIYDVKGQVVF----AKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKL 226
Query: 117 STVP-SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK 175
+ +L + L+ +L N H + +R N ++ T+ + +
Sbjct: 227 VLIEKALRFSQNLEHFDLRGNGFHCGT---------LRDFFSKNQRVQTVAKQTVKKLTG 277
Query: 176 IDTLKLNGNKLASLK 190
+ + L
Sbjct: 278 QNEEECTVPTLGHYG 292
Score = 60.4 bits (147), Expect = 2e-11
Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 11/127 (8%)
Query: 71 KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYL 128
EI + + L+ + N+ ELDLS N LS + L L
Sbjct: 3 HEIKQNG--NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
+ +NL+ N +++ +S +R +D++N + + I+TL N ++
Sbjct: 61 ELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELLVGP-----SIETLHAANNNISR 113
Query: 189 LKPRTWS 195
+
Sbjct: 114 VSCSRGQ 120
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 86.7 bits (215), Expect = 2e-20
Identities = 34/178 (19%), Positives = 69/178 (38%), Gaps = 13/178 (7%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CS CI+R + +PE + +DLS N+I L + F + ++
Sbjct: 4 GTSECSV----IGYNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFS--RLQDL 56
Query: 83 QKLYLRKCKLEF-VDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIH 139
Q L + + + + FRG++++ L L N + + + + L+ + L +
Sbjct: 57 QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD 116
Query: 140 --QISSYSFQSTPGIRYIDMSNCQIHTIYSE-AFYGIDKIDTLKLNGNKLASLKPRTW 194
+S F+ + + + + I I F + + L L NK+ S+
Sbjct: 117 GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174
Score = 84.4 bits (209), Expect = 2e-19
Identities = 33/132 (25%), Positives = 71/132 (53%), Gaps = 4/132 (3%)
Query: 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
+ DLS + I L K +F T++++L L + ++ +DD AF G+T++ +L+LS N
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHF--TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333
Query: 115 LLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
L ++ S ++ + L+ ++L++N I + SF P ++ + + Q+ ++ F
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393
Query: 173 IDKIDTLKLNGN 184
+ + + L+ N
Sbjct: 394 LTSLQKIWLHTN 405
Score = 76.3 bits (188), Expect = 1e-16
Identities = 27/132 (20%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 60 DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
N F + + ++ L K K+ + F T++++L L+ N ++ +
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314
Query: 120 PSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKID 177
+ + +L +NL+ N + I S F++ + +D+S I + ++F G+ +
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374
Query: 178 TLKLNGNKLASL 189
L L+ N+L S+
Sbjct: 375 ELALDTNQLKSV 386
Score = 73.2 bits (180), Expect = 1e-15
Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 15/152 (9%)
Query: 57 QVLDLSSNNINVLQKEIF-----------LQMGITNIQKLYLRKCKLEFVDDRAFRG--V 103
LDLS N + F L + + + D+ F+G
Sbjct: 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274
Query: 104 TNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQ 161
+ + DLS + + + + + L+ + LA N I++I +F + +++S
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334
Query: 162 IHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
+ +I S F +DK++ L L+ N + +L ++
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366
Score = 63.6 bits (155), Expect = 2e-12
Identities = 31/186 (16%), Positives = 59/186 (31%), Gaps = 49/186 (26%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYL--------RKCKLEFVDDRAFRGVTNMDE 108
VLDL+ N + + +E L + L L + L + T++
Sbjct: 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT 216
Query: 109 LDLSDNLLSTVPSLIY-----------------------------------------IPY 127
LDLS N + +
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276
Query: 128 LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLA 187
+K+ +L+ + I + F + + ++ +I+ I AF+G+ + L L+ N L
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 188 SLKPRT 193
S+ R
Sbjct: 337 SIDSRM 342
Score = 59.4 bits (144), Expect = 6e-11
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L+LS N + + +F + ++ L L + + D++F G+ N+ EL L N L
Sbjct: 326 LKLNLSQNFLGSIDSRMF--ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383
Query: 117 STVPSLIY--IPYLKSINLAHNPIH 139
+VP I+ + L+ I L NP
Sbjct: 384 KSVPDGIFDRLTSLQKIWLHTNPWD 408
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 86.5 bits (214), Expect = 4e-20
Identities = 26/155 (16%), Positives = 63/155 (40%), Gaps = 4/155 (2%)
Query: 35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF 94
+ V+ +P+ + T +L++S N I+ L L ++ ++ L + ++++
Sbjct: 2 EFLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDIL--SLSKLRILIISHNRIQY 59
Query: 95 VDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYS-FQSTPGIR 153
+D F+ ++ LDLS N L + LK ++L+ N + F + ++
Sbjct: 60 LDISVFKFNQELEYLDLSHNKLVKISC-HPTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118
Query: 154 YIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
++ +S + ++ L + G
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGE 153
Score = 60.6 bits (147), Expect = 2e-11
Identities = 21/131 (16%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD-DRAFRGVTNMDELDLSD 113
+ + L L N + L K + + ++Q+L + + + + + ++ L++S
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408
Query: 114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGI 173
N+L+ P +K ++L N I I + ++ +++++ Q+ ++ F +
Sbjct: 409 NILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLE-ALQELNVASNQLKSVPDGIFDRL 467
Query: 174 DKIDTLKLNGN 184
+ + L+ N
Sbjct: 468 TSLQKIWLHTN 478
Score = 58.7 bits (142), Expect = 1e-10
Identities = 20/137 (14%), Positives = 48/137 (35%), Gaps = 7/137 (5%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
+ + S+ Q I+ +N+ V ++ LD S+NLL+
Sbjct: 280 IHQVVSDVFGFPQSYIYEIF--SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337
Query: 118 TVPSLIY--IPYLKSINLAHNPIHQISSYS--FQSTPGIRYIDMSNCQI-HTIYSEAFYG 172
+ L+++ L N + ++S + ++ +D+S + +
Sbjct: 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397
Query: 173 IDKIDTLKLNGNKLASL 189
+ +L ++ N L
Sbjct: 398 TKSLLSLNMSSNILTDT 414
Score = 50.2 bits (120), Expect = 9e-08
Identities = 14/140 (10%), Positives = 47/140 (33%), Gaps = 7/140 (5%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKC---KLEFVDDRAFRGVTNMDELDLSDNL 115
+S+ + T+++ L + + F + +NM+ + + +
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311
Query: 116 LSTVPSLI--YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI--YSEAFY 171
V L I ++ ++N + + + + + Q+ + +E
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371
Query: 172 GIDKIDTLKLNGNKLASLKP 191
+ + L ++ N ++ +
Sbjct: 372 QMKSLQQLDISQNSVSYDEK 391
Score = 50.2 bits (120), Expect = 9e-08
Identities = 25/165 (15%), Positives = 54/165 (32%), Gaps = 10/165 (6%)
Query: 39 ECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQK---EIFLQMGITNIQKLYLRKCKLEFV 95
+ F +I + + ++ +L+ NNI I + T + + KL+
Sbjct: 203 DNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262
Query: 96 D-----DRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQS 148
D + + + + ++ S IY + N + +
Sbjct: 263 LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322
Query: 149 TPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
++D SN + E + +++TL L N+L L
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA 367
Score = 48.3 bits (115), Expect = 4e-07
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 109 LDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
+D S N L VP + +N++ N I ++ + S +R + +S+ +I +
Sbjct: 5 VDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS 63
Query: 169 AFYGIDKIDTLKLNGNKLASL 189
F +++ L L+ NKL +
Sbjct: 64 VFKFNQELEYLDLSHNKLVKI 84
Score = 46.0 bits (109), Expect = 2e-06
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 48 IPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
I + +VLDL SN I + K++ + +Q+L + +L+ V D F +T++
Sbjct: 415 IFRCLPPRIKVLDLHSNKIKSIPKQVV---KLEALQELNVASNQLKSVPDGIFDRLTSLQ 471
Query: 108 ELDLSDN 114
++ L N
Sbjct: 472 KIWLHTN 478
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 85.2 bits (210), Expect = 4e-20
Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 9/121 (7%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQV--LDLSSNN-INVLQKEIFLQMGI 79
CP C G + C + + L + + + L+ +
Sbjct: 1 CPDACCPH---GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGL-- 55
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP-SLIYIPYLKSINLAHNPI 138
++ L + K L FV AF + L+LS N L ++ + L+ + L+ NP+
Sbjct: 56 GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115
Query: 139 H 139
H
Sbjct: 116 H 116
Score = 63.2 bits (153), Expect = 3e-12
Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 111 LSDNLLSTVPSLIYIPYLKSINLAHNP-IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
D L ++ L L + + + + + + +R + + + + +A
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 170 FYGIDKIDTLKLNGNKLASLKPRT 193
F+ ++ L L+ N L SL +T
Sbjct: 76 FHFTPRLSRLNLSFNALESLSWKT 99
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 84.0 bits (208), Expect = 7e-20
Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 31/171 (18%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
C + V C RN +P + DT +L LS N +
Sbjct: 4 CEVSKVAS----HLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLA---------- 49
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQIS 142
T + +L+L L+ + +P L +++L+HN + +
Sbjct: 50 ----------------TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP 93
Query: 143 SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
Q+ P + +D+S ++ ++ A G+ ++ L L GN+L +L P
Sbjct: 94 L-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Score = 53.2 bits (128), Expect = 7e-09
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q L L N + L + ++KL L L + G+ N+D L L +N L
Sbjct: 127 QELYLKGNELKTLPPGLL--TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Query: 117 STVPSLIY-IPYLKSINLAHNP 137
T+P + L L NP
Sbjct: 185 YTIPKGFFGSHLLPFAFLHGNP 206
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 84.9 bits (210), Expect = 1e-19
Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 5/139 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG-VTNMDELDLSDNL 115
+ + L++N I +L+ + +Q L L+ +++ V+ ++ L+L N
Sbjct: 123 KNIYLANNKITMLRDLDEGCR--SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180
Query: 116 LSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK 175
+ V + LK+++L+ N + + FQS G+ +I + N ++ I +A
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQN 238
Query: 176 IDTLKLNGNKLASLKPRTW 194
++ L GN R +
Sbjct: 239 LEHFDLRGNGFHCGTLRDF 257
Score = 83.0 bits (205), Expect = 4e-19
Identities = 24/154 (15%), Positives = 58/154 (37%), Gaps = 18/154 (11%)
Query: 56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
++ ++ +++ + N+++L L L + T ++ L+LS N+
Sbjct: 12 YKIEKVTDSSLKQALASLR--QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 116 LSTVPSLIYIPYLKSINLAHNPIH----------------QISSYSFQSTPGIRYIDMSN 159
L L + L++++L +N + IS S G + I ++N
Sbjct: 70 LYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLAN 129
Query: 160 CQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
+I + ++ L L N++ ++
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163
Score = 80.3 bits (198), Expect = 4e-18
Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 13/146 (8%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
+ G + + L ++NNI+ + + +YL K+ + D + +
Sbjct: 94 ELLVGPSI--ETLHAANNNISRVSCSRG-----QGKKNIYLANNKITMLRDLDEGCRSRV 146
Query: 107 DELDLSDNLLSTVPSLIYI---PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
LDL N + TV L+ +NL +N I+ + ++ +D+S+ ++
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA 204
Query: 164 TIYSEAFYGIDKIDTLKLNGNKLASL 189
+ F + + L NKL +
Sbjct: 205 FM-GPEFQSAAGVTWISLRNNKLVLI 229
Score = 59.9 bits (145), Expect = 4e-11
Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 11/127 (8%)
Query: 71 KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYL 128
EI + + L+ + N+ ELDLS N LS + L L
Sbjct: 3 HEIKQNG--NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
+ +NL+ N +++ +S +R +D++N + + I+TL N ++
Sbjct: 61 ELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELLVGP-----SIETLHAANNNISR 113
Query: 189 LKPRTWS 195
+
Sbjct: 114 VSCSRGQ 120
Score = 52.2 bits (125), Expect = 2e-08
Identities = 16/156 (10%), Positives = 38/156 (24%), Gaps = 13/156 (8%)
Query: 47 TIPEGIDLDT--QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104
I + + + DL N + F +Q + + ++ + + T
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQT--VKKLTGQNEEECT 284
Query: 105 NMDELDLSDNLLSTVPS-------LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDM 157
+P+ + ++ + ++ R ID
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQAR-QREIDA 343
Query: 158 SNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
Q T+ + TL+ L
Sbjct: 344 LKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379
Score = 36.4 bits (84), Expect = 0.004
Identities = 12/99 (12%), Positives = 27/99 (27%), Gaps = 5/99 (5%)
Query: 54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113
+ +L + L+ E Q +++ K + V D+ L+
Sbjct: 313 KEHALLSGQGSETERLECERENQ---ARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369
Query: 114 NLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTP 150
L S L ++ + + +P
Sbjct: 370 KALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSP 408
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 82.6 bits (204), Expect = 7e-19
Identities = 32/192 (16%), Positives = 76/192 (39%), Gaps = 10/192 (5%)
Query: 5 FILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSN 64
+ S + LA + + P S + + V+ +RN +P+ + T+ L LS N
Sbjct: 8 IVGSFHFVCALALIVGSMTP--FSNE---LESMVDYSNRNLTHVPKDLPPRTKALSLSQN 62
Query: 65 NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY 124
+I+ L+ ++ ++ L L ++ +D F +++ LD+S N L +
Sbjct: 63 SISELRMPDIS--FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCP- 119
Query: 125 IPYLKSINLAHNPIHQISSYS-FQSTPGIRYIDMSNCQIHTIYSEAFYGID-KIDTLKLN 182
+ L+ ++L+ N + F + + ++ +S + + + L L
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLV 179
Query: 183 GNKLASLKPRTW 194
+ + +
Sbjct: 180 SYHIKGGETESL 191
Score = 56.0 bits (135), Expect = 1e-09
Identities = 19/154 (12%), Positives = 53/154 (34%), Gaps = 14/154 (9%)
Query: 45 FYTIPEGI---DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101
F E + + + LS ++ + ++ L + +
Sbjct: 317 FLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP--SSFTFLNFTQNVFTDSVFQGCS 374
Query: 102 GVTNMDELDLSDNLLSTVPSLIYIP-YLKSINLAHNPIHQISSYSF----QSTPGIRYID 156
+ + L L N L + + + S+ ++ ++S+++ I ++
Sbjct: 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434
Query: 157 MSNCQIHTIYSEAFYGI-DKIDTLKLNGNKLASL 189
+S+ + F + K+ L L+ N++ S+
Sbjct: 435 LSSNMLT---GSVFRCLPPKVKVLDLHNNRIMSI 465
Score = 44.9 bits (106), Expect = 6e-06
Identities = 17/157 (10%), Positives = 48/157 (30%), Gaps = 10/157 (6%)
Query: 45 FYTIPEGIDLDTQVLDLSSNNINVLQK---EIFLQMGITNIQKLYLRKCKLEFVDDRAF- 100
T + +L+++ +I K ++F ++ L + + DR
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297
Query: 101 ----RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRY 154
+ ++ + + + +Y + L+ + I S +
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357
Query: 155 IDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
++ + + + ++ TL L N L +
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK 394
Score = 42.2 bits (99), Expect = 5e-05
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
VL+LSSN L +F + ++ L L ++ + + + EL+++ N
Sbjct: 430 ILVLNLSSNM---LTGSVFRCLP-PKVKVLDLHNNRIMSIPK-DVTHLQALQELNVASNQ 484
Query: 116 LSTVP--SLIYIPYLKSINLAHNP 137
L +VP + L+ I L NP
Sbjct: 485 LKSVPDGVFDRLTSLQYIWLHDNP 508
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 79.0 bits (195), Expect = 3e-18
Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 4/168 (2%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
C C GK+ V+C ++ ++P GI DT+ LDL S + L F G+T +
Sbjct: 4 CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATF--RGLTKL 61
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQ 140
L L +L+ + F +T + L L++N L+++P ++ + L + L N +
Sbjct: 62 TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS 121
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
+ S F ++ + ++ Q+ +I + AF + + TL L+ N+L S
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169
Score = 45.5 bits (108), Expect = 2e-06
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 37 TVECIDRNFYTIPEGI-DLDT--QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE 93
T+ + ++P G+ D T L L N + L +F +T +++L L +L+
Sbjct: 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF--DRLTKLKELRLNTNQLQ 144
Query: 94 FVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+ AF +TN+ L LS N L +VP + + L++I L N
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 78.8 bits (194), Expect = 2e-17
Identities = 23/148 (15%), Positives = 51/148 (34%), Gaps = 9/148 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGI-------TNIQKLYLRKCKL-EFVDDRAFRGVTNMDE 108
Q L+++ N + + IQ Y+ L EF + + + +
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577
Query: 109 LDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
LD N + + + L + L +N I +I T + + S+ ++ I +
Sbjct: 578 LDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNI 637
Query: 169 AFYG-IDKIDTLKLNGNKLASLKPRTWS 195
+ + ++ + NK+ S
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGSEGRNISC 665
Score = 75.7 bits (186), Expect = 2e-16
Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 16/158 (10%)
Query: 44 NFYTIPEGIDLDT----QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA 99
N P L +LD N + L E F + L L ++E + +
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTN--VKLTDLKLDYNQIEEIPEDF 614
Query: 100 FRGVTNMDELDLSDNLLSTVPSLIYI---PYLKSINLAHNPIHQISSYSFQSTPGIR--- 153
++ L S N L +P++ + S++ ++N I S +
Sbjct: 615 CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674
Query: 154 --YIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
+ +S +I +E F I T+ L+ N + S+
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712
Score = 73.4 bits (180), Expect = 1e-15
Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 18/162 (11%)
Query: 44 NFYTIPEGIDLDT----QVLDLSSNNINVLQKEIFLQMGI---TNIQKLYLRKCKLEFVD 96
IP + + +D S N I + I M N + L +++
Sbjct: 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689
Query: 97 DRAFRGVTNMDELDLSDNLLSTVP---------SLIYIPYLKSINLAHNPIHQIS-SYSF 146
F + + + LS+NL++++P + L +I+L N + +S +
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749
Query: 147 QSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
+ P + +D+S + ++ ++ + + A
Sbjct: 750 TTLPYLSNMDVSYNCFSSFPTQPL-NSSQLKAFGIRHQRDAE 790
Score = 56.4 bits (136), Expect = 9e-10
Identities = 18/139 (12%), Positives = 44/139 (31%), Gaps = 14/139 (10%)
Query: 47 TIPEGIDLDT----QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD----- 97
++ + T +D+S N + + + ++ +R + +
Sbjct: 742 SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL---NSSQLKAFGIRHQRDAEGNRILRQW 798
Query: 98 -RAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYID 156
++ +L + N + V + P L +++A NP I S
Sbjct: 799 PTGITTCPSLIQLQIGSNDIRKVDEKL-TPQLYILDIADNPNISIDVTSVCPYIEAGMYV 857
Query: 157 MSNCQIHTIYSEAFYGIDK 175
+ + I GI++
Sbjct: 858 LLYDKTQDIRGCDALGIER 876
Score = 52.2 bits (125), Expect = 2e-08
Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 9/140 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VL +++ V + + ++ + + ++ + ++ DL + +
Sbjct: 350 KVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY-KKMFLDYDQRLNLSDLLQDAI 408
Query: 117 STVPSLIYIPYLKSINLAH-------NPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
+ P + I I+L N I IS + Q ++ I +N
Sbjct: 409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK-AIQRLTKLQIIYFANSPFTYDNIAV 467
Query: 170 FYGIDKIDTLKLNGNKLASL 189
+ D K N+ S
Sbjct: 468 DWEDANSDYAKQYENEELSW 487
Score = 51.0 bits (122), Expect = 6e-08
Identities = 16/141 (11%), Positives = 54/141 (38%), Gaps = 13/141 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD------DRAFRGVTNMDELD 110
+ DL + IN + ++ ++ L+ ++ + +A + +T + +
Sbjct: 399 NLSDLLQDAINRNPEMKPIK----KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIY 454
Query: 111 LSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+++ + + + N + ++ S+ + + +++ NC T +
Sbjct: 455 FANSPFTYDNIAVD---WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511
Query: 171 YGIDKIDTLKLNGNKLASLKP 191
Y + ++ +L + N+ S
Sbjct: 512 YDLPELQSLNIACNRGISAAQ 532
Score = 47.2 bits (112), Expect = 1e-06
Identities = 18/146 (12%), Positives = 43/146 (29%), Gaps = 13/146 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L+ + Q+ T ++ L D + + +
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQL--TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383
Query: 117 STVPSLIYIPYLKSINL---------AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
+++ Y + +NL + + I S S + +++N +I I S
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RITFI-S 441
Query: 168 EAFYGIDKIDTLKLNGNKLASLKPRT 193
+A + K+ + +
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIAV 467
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 71.2 bits (175), Expect = 5e-15
Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 13/143 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+L+ N + + L L ++ + ++ L + N L
Sbjct: 333 GMLECLYNQLEGKLPAFG---SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389
Query: 117 STVPSLIYI---PYLKSINLAHNPIHQISSYSFQSTPG-------IRYIDMSNCQIHTIY 166
+P++ + +I+ ++N I + +F + I++SN QI
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449
Query: 167 SEAFYGIDKIDTLKLNGNKLASL 189
E F + ++ L GN L +
Sbjct: 450 KELFSTGSPLSSINLMGNMLTEI 472
Score = 63.9 bits (156), Expect = 2e-12
Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 24/167 (14%)
Query: 44 NFYTIPEGIDLDT----QVLDLSSNNINVLQKEIFLQM-----GITNIQKLYLRKCKLEF 94
IP D + +D S N I + + F + N+ + L ++
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447
Query: 95 VDDRAFRGVTNMDELDLSDNLLSTVP---------SLIYIPYLKSINLAHNPIHQI-SSY 144
F + + ++L N+L+ +P + L SI+L N + ++ +
Sbjct: 448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507
Query: 145 SFQSTPGIRYIDMSNCQIHTIYSEAF-----YGIDKIDTLKLNGNKL 186
+ P + ID+S ++ G + GN+
Sbjct: 508 RATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT 554
Score = 61.2 bits (149), Expect = 2e-11
Identities = 23/148 (15%), Positives = 60/148 (40%), Gaps = 9/148 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGIT------NIQKLYLRKCKL-EFVDDRAFRGVTNMDEL 109
Q+++++ N ++ + IQ +Y+ L F + + + + + L
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335
Query: 110 DLSDNLLSTV-PSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
+ N L P+ L S+NLA+N I +I + T + + ++ ++ I +
Sbjct: 336 ECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNI 395
Query: 169 AFYG-IDKIDTLKLNGNKLASLKPRTWS 195
+ + + + N++ S+ + +
Sbjct: 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFD 423
Score = 59.3 bits (144), Expect = 7e-11
Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 16/148 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQM-----GITNIQKLYLRKCKL-EFVDDRAFRGVTNMDELD 110
++L N + + K + + LR KL + DD + + +D
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519
Query: 111 LSDNLLSTVP-------SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
LS N S P +L + N + P + + + + I
Sbjct: 520 LSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579
Query: 164 TIYSEAFYGIDKIDTLKLNGNKLASLKP 191
+ + I L + N S+
Sbjct: 580 KVNEKIT---PNISVLDIKDNPNISIDL 604
Score = 48.1 bits (115), Expect = 5e-07
Identities = 16/142 (11%), Positives = 39/142 (27%), Gaps = 14/142 (9%)
Query: 44 NFYTIPEGIDLDT----QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC------KLE 93
+ + T +DLS N+ + + + ++ +R +
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL---NSSTLKGFGIRNQRDAQGNRTL 555
Query: 94 FVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIR 153
++ +L + N + V I P + +++ NP I
Sbjct: 556 REWPEGITLCPSLTQLQIGSNDIRKVNEKIT-PNISVLDIKDNPNISIDLSYVCPYIEAG 614
Query: 154 YIDMSNCQIHTIYSEAFYGIDK 175
+ + I I +
Sbjct: 615 MYMLFYDKTQDIRGCDALDIKR 636
Score = 46.2 bits (110), Expect = 2e-06
Identities = 25/171 (14%), Positives = 59/171 (34%), Gaps = 33/171 (19%)
Query: 51 GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE----------------- 93
I L + SNNI + K + +T +++ Y+
Sbjct: 180 RITLKDTQIGQLSNNITFVSKAVM---RLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236
Query: 94 --FVDDRAFRGVTNMDELDLSD-NLLSTVPSLIY-IPYLKSINLAHNPIHQISSY----- 144
+D + + ++ ++++ + L+ +P+ + +P ++ IN+A N
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296
Query: 145 ---SFQSTPGIRYIDMSNCQIHTI-YSEAFYGIDKIDTLKLNGNKLASLKP 191
I+ I + + T + + K+ L+ N+L P
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347
Score = 43.9 bits (104), Expect = 1e-05
Identities = 19/135 (14%), Positives = 38/135 (28%), Gaps = 9/135 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+VL L S+ V ++ + GI+ ++ D DL + +
Sbjct: 108 EVLALGSHGEKVNERLFGPK-GISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166
Query: 117 STVPSLIYIP-------YLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
++ P I I N I +S + +R M N
Sbjct: 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNSPFVAENICE 225
Query: 170 FYGIDKIDTLKLNGN 184
+ + + +
Sbjct: 226 AWENENSEYAQQYKT 240
Score = 34.2 bits (79), Expect = 0.019
Identities = 23/191 (12%), Positives = 54/191 (28%), Gaps = 27/191 (14%)
Query: 17 SVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDT----QVLDLSSNNIN-VLQK 71
S G + W K + + + G+ L++ L L + +
Sbjct: 48 SQQGFGTQPGAN--WNFNK------ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD 99
Query: 72 EIFLQMGITNIQKLYLRKCKLEFVDD----RAFRGVTNMDELDLSDNLLSTVPSLIYIPY 127
I +T ++ L L + + + + ++ + Y P
Sbjct: 100 AIG---QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQK-TFVDYDPR 155
Query: 128 LKSINLAHNPIHQISSY-----SFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLN 182
+L + I+ S + T I + I + S+A + K+ +
Sbjct: 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV-SKAVMRLTKLRQFYMG 214
Query: 183 GNKLASLKPRT 193
+ +
Sbjct: 215 NSPFVAENICE 225
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 67.3 bits (165), Expect = 2e-14
Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 35/143 (24%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKE-IFLQM---- 77
CP C C+ TV+C R IP I L T L L+ N + + + +F ++
Sbjct: 2 CPAMCHCE----GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLV 57
Query: 78 ------------------GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
G ++IQ+L L + K++ + ++ F G+ + L+L DN +S V
Sbjct: 58 KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117
Query: 120 P-----SLIYIPYLKSINLAHNP 137
L L S+NLA NP
Sbjct: 118 MPGSFEHL---NSLTSLNLASNP 137
Score = 37.7 bits (88), Expect = 8e-04
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 116 LSTVPSLIYIP-YLKSINLAHNPIHQISSY-SFQSTPGIRYIDMSNCQIHTIYSEAFYGI 173
L +P IP + + L N + +ISS F P + +++ Q+ I AF G
Sbjct: 20 LKEIPR--DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77
Query: 174 DKIDTLKLNGNKLASL 189
I L+L NK+ +
Sbjct: 78 SHIQELQLGENKIKEI 93
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 68.3 bits (168), Expect = 5e-14
Identities = 24/135 (17%), Positives = 55/135 (40%), Gaps = 8/135 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
N I + + +T + L + K+ + ++ + L++ N +
Sbjct: 202 HYFTAYVNQITDI---TPVA-NMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQI 255
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
S + ++ + LK +N+ N I IS + + + ++N Q+ E G+ +
Sbjct: 256 SDINAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313
Query: 177 DTLKLNGNKLASLKP 191
TL L+ N + ++P
Sbjct: 314 TTLFLSQNHITDIRP 328
Score = 65.3 bits (160), Expect = 5e-13
Identities = 22/137 (16%), Positives = 57/137 (41%), Gaps = 10/137 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L+ N I + L +T++ ++ + +T ++ L + +N +
Sbjct: 180 YSLSLNYNQIEDI---SPLA-SLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKI 233
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
+ + L + L + + N I I+ + + ++ +++ + QI I + ++
Sbjct: 234 TDLSPLANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDI--SVLNNLSQL 289
Query: 177 DTLKLNGNKLASLKPRT 193
++L LN N+L +
Sbjct: 290 NSLFLNNNQLGNEDMEV 306
Score = 63.7 bits (156), Expect = 2e-12
Identities = 21/130 (16%), Positives = 49/130 (37%), Gaps = 8/130 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L + +N I L L ++ + L + ++ ++ A + +T + L++ N +
Sbjct: 224 NSLKIGNNKITDL---SPLA-NLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQI 277
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
S + L + L S+ L +N + + + +S I I + K+
Sbjct: 278 SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI--RPLASLSKM 335
Query: 177 DTLKLNGNKL 186
D+ +
Sbjct: 336 DSADFANQVI 345
Score = 60.6 bits (148), Expect = 2e-11
Identities = 20/135 (14%), Positives = 53/135 (39%), Gaps = 9/135 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L+L +N+ + +T + L + + K++ V +T++ L L+ N +
Sbjct: 135 YSLNLGANHNLSDLSPLS---NMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQI 189
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
+ L + L N I I+ + + + + N +I + + ++
Sbjct: 190 EDISPLASLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDL--SPLANLSQL 245
Query: 177 DTLKLNGNKLASLKP 191
L++ N+++ +
Sbjct: 246 TWLEIGTNQISDINA 260
Score = 59.9 bits (146), Expect = 4e-11
Identities = 26/133 (19%), Positives = 56/133 (42%), Gaps = 10/133 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L ++ ++ Q + +I KL + K+ + +TN++ L+L+ N +
Sbjct: 25 IRAVLQKASV----TDVVTQEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQI 78
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
+ + L + L ++ + N I IS + Q+ +R + ++ I I + K+
Sbjct: 79 TDISPLSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNISDI--SPLANLTKM 134
Query: 177 DTLKLNGNKLASL 189
+L L N S
Sbjct: 135 YSLNLGANHNLSD 147
Score = 57.9 bits (141), Expect = 2e-10
Identities = 20/136 (14%), Positives = 51/136 (37%), Gaps = 11/136 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L + +N I + + TN+++LYL + + + +T M L+L N
Sbjct: 91 TNLYIGTNKITDI--SALQNL--TNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHN 144
Query: 117 STVPSLI-YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK 175
+ S + + L + + + + ++ + + + ++ QI I +
Sbjct: 145 LSDLSPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIEDI--SPLASLTS 200
Query: 176 IDTLKLNGNKLASLKP 191
+ N++ + P
Sbjct: 201 LHYFTAYVNQITDITP 216
Score = 47.5 bits (114), Expect = 6e-07
Identities = 12/88 (13%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
L ++ V + + + + +A + I + + Y++++ QI
Sbjct: 22 AEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQIT 79
Query: 164 TIYSEAFYGIDKIDTLKLNGNKLASLKP 191
I + K+ L + NK+ +
Sbjct: 80 DI--SPLSNLVKLTNLYIGTNKITDISA 105
Score = 36.0 bits (84), Expect = 0.004
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L++N + E+ + TN+ L+L + + D R ++ MD D ++ ++
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGL--TNLTTLFLSQNHIT--DIRPLASLSKMDSADFANQVI 345
Query: 117 S 117
Sbjct: 346 K 346
Score = 31.4 bits (72), Expect = 0.16
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 128 LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLA 187
++ PI+QI + + + ++ I L + G K+A
Sbjct: 2 AATLATLPAPINQIF--PDADLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKVA 57
Query: 188 SLKP 191
S++
Sbjct: 58 SIQG 61
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 67.4 bits (164), Expect = 1e-13
Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L+ N + +I + N+ L+L + K++ D + + + + L L N +
Sbjct: 68 TKLFLNGNKL----TDIKPLTNLKNLGWLFLDENKIK--DLSSLKDLKKLKSLSLEHNGI 121
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
S + L+++P L+S+ L +N I I+ + + + + QI I G+ K+
Sbjct: 122 SDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI--VPLAGLTKL 177
Query: 177 DTLKLNGNKLASLKP 191
L L+ N ++ L+
Sbjct: 178 QNLYLSKNHISDLRA 192
Score = 63.6 bits (154), Expect = 3e-12
Identities = 21/133 (15%), Positives = 53/133 (39%), Gaps = 10/133 (7%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
S I K+IF K L+K + D + ++D++ +++ + +
Sbjct: 4 TITVSTPI----KQIFPDDAFAETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKS 57
Query: 119 VPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDT 178
V + Y+P + + L N + I + + ++ + +I + + + K+ +
Sbjct: 58 VQGIQYLPNVTKLFLNGNKLTDIK--PLTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS 113
Query: 179 LKLNGNKLASLKP 191
L L N ++ +
Sbjct: 114 LSLEHNGISDING 126
Score = 62.4 bits (151), Expect = 7e-12
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ ++++I +Q +Q + N+ KL+L KL + + N+ L L +N +
Sbjct: 46 DQIIANNSDIKSVQ---GIQ-YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
+ SL + LKS++L HN I I+ P + + + N +I I + K+
Sbjct: 100 KDLSSLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKL 155
Query: 177 DTLKLNGNKLASLKP 191
DTL L N+++ + P
Sbjct: 156 DTLSLEDNQISDIVP 170
Score = 54.3 bits (130), Expect = 4e-09
Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 9/123 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L L +N I + L +T + L L ++ D G+T + L LS N +
Sbjct: 134 ESLYLGNNKITDIT---VLS-RLTKLDTLSLEDNQIS--DIVPLAGLTKLQNLYLSKNHI 187
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQ---STPGIRYIDMSNCQIHTIYSEAFYGI 173
S + +L + L + L ++ D S I + Y
Sbjct: 188 SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEK 247
Query: 174 DKI 176
+
Sbjct: 248 PNV 250
Score = 41.2 bits (96), Expect = 1e-04
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 4/86 (4%)
Query: 106 MDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
M E + + NL + + I I +N I ++
Sbjct: 1 MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV 58
Query: 166 YSEAFYGIDKIDTLKLNGNKLASLKP 191
+ + + L LNGNKL +KP
Sbjct: 59 --QGIQYLPNVTKLFLNGNKLTDIKP 82
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 67.2 bits (164), Expect = 1e-13
Identities = 23/143 (16%), Positives = 52/143 (36%), Gaps = 20/143 (13%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
T+P+ + L + NN+ L ++ L + +L + G+ +
Sbjct: 54 TLPDCLPAHITTLVIPDNNLTSLPAL------PPELRTLEVSGNQLTSLPV-LPPGLLEL 106
Query: 107 DELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
L +PS L + + N + + PG++ + +S+ Q+ ++
Sbjct: 107 SIFSNPLTHLPALPS-----GLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLP 157
Query: 167 SEAFYGIDKIDTLKLNGNKLASL 189
+ ++ L N+L SL
Sbjct: 158 AL----PSELCKLWAYNNQLTSL 176
Score = 57.2 bits (138), Expect = 4e-10
Identities = 27/146 (18%), Positives = 61/146 (41%), Gaps = 21/146 (14%)
Query: 44 NFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
++P Q L +S N + L + + KL+ +L +
Sbjct: 132 QLTSLPVLPP-GLQELSVSDNQLASLPALP------SELCKLWAYNNQLTSLPM----LP 180
Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
+ + EL +SDN L+++P+L L + +N + + + G++ + +S ++
Sbjct: 181 SGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLT 234
Query: 164 TIYSEAFYGIDKIDTLKLNGNKLASL 189
++ ++ L ++GN+L SL
Sbjct: 235 SLPVL----PSELKELMVSGNRLTSL 256
Score = 51.8 bits (124), Expect = 3e-08
Identities = 18/120 (15%), Positives = 46/120 (38%), Gaps = 16/120 (13%)
Query: 47 TIPEGI-DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN 105
++P +L L +N + L + +++L + +L + +
Sbjct: 195 SLPTLPSEL--YKLWAYNNRLTSLPALP------SGLKELIVSGNRLTSLPV----LPSE 242
Query: 106 MDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ EL +S N L+++P L L S+++ N + ++ S +++ +
Sbjct: 243 LKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPE-SLIHLSSETTVNLEGNPLSER 299
Score = 42.2 bits (99), Expect = 5e-05
Identities = 12/86 (13%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
L++ ++ L+T+P + ++ ++ + N + + + P +R +++S Q+
Sbjct: 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT 94
Query: 164 TIYSEAFYGIDKIDTLKLNGNKLASL 189
++ G+ ++ L +L
Sbjct: 95 SL-PVLPPGLLELSIFSNPLTHLPAL 119
Score = 41.0 bits (96), Expect = 1e-04
Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L +S N + L + + L + + +L + + + +++ ++L N L
Sbjct: 244 KELMVSGNRLTSLPMLP------SGLLSLSVYRNQLTRLPE-SLIHLSSETTVNLEGNPL 296
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQST 149
S + S PI + +
Sbjct: 297 SERTLQAL-REITSAPGYSGPIIRFDMAGASAP 328
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 65.5 bits (160), Expect = 2e-13
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 13/166 (7%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP CSC TV+C + ++P GI + Q+L L N I L+ +F + N+
Sbjct: 13 CPSQCSC----SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVF--DSLINL 66
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQ 140
++LYL +L + F +T + LDL N L+ +PS ++ + +LK + + N +
Sbjct: 67 KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN---K 123
Query: 141 ISS--YSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN 184
++ + + ++ + Q+ +I AF + + L GN
Sbjct: 124 LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 64.3 bits (157), Expect = 4e-13
Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 8/164 (4%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP CSC TVEC + ++P GI T LDL +N++ L +F +T++
Sbjct: 1 CPSRCSC----SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVF--DELTSL 54
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQ 140
+LYL KL+ + + F +T++ L+LS N L ++P+ ++ + LK + L N +
Sbjct: 55 TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS 114
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN 184
+ F ++ + + Q+ ++ F + + + L+ N
Sbjct: 115 LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 65.8 bits (161), Expect = 5e-13
Identities = 29/135 (21%), Positives = 60/135 (44%), Gaps = 10/135 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L ++N I+ + L +TN+ +L L +L+ + +TN+ +LDL++N +
Sbjct: 202 ESLIATNNQISDI---TPLG-ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI 255
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
S + L + L + L N I IS + ++++ Q+ I + +
Sbjct: 256 SNLAPLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNL 311
Query: 177 DTLKLNGNKLASLKP 191
L L N ++ + P
Sbjct: 312 TYLTLYFNNISDISP 326
Score = 63.1 bits (154), Expect = 3e-12
Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 10/135 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LDL++N I+ L L G+T + +L L ++ + G+T + L+L++N L
Sbjct: 246 TDLDLANNQISNL---APLS-GLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQL 299
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
+ + + L + L N I IS S ++ + N ++ + + + I
Sbjct: 300 EDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKVSDV--SSLANLTNI 355
Query: 177 DTLKLNGNKLASLKP 191
+ L N+++ L P
Sbjct: 356 NWLSAGHNQISDLTP 370
Score = 61.5 bits (150), Expect = 1e-11
Identities = 22/135 (16%), Positives = 55/135 (40%), Gaps = 10/135 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L N+ + Q + + L + ++ +D + N+ +++ S+N L
Sbjct: 27 MKTVLGKTNV----TDTVSQTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQL 80
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
+ + L + L I + +N I I+ + + + + N QI I + + +
Sbjct: 81 TDITPLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDI--DPLKNLTNL 136
Query: 177 DTLKLNGNKLASLKP 191
+ L+L+ N ++ +
Sbjct: 137 NRLELSSNTISDISA 151
Score = 60.4 bits (147), Expect = 3e-11
Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L+LSSN I+ + L T++Q+L + +T ++ LD+S N +
Sbjct: 137 NRLELSSNTISDISALSGL----TSLQQLSFGNQVTDLK---PLANLTTLERLDISSNKV 189
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
S + L + L+S+ +N I I+ + + ++ Q+ I + +
Sbjct: 190 SDISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDI--GTLASLTNL 245
Query: 177 DTLKLNGNKLASLKP 191
L L N++++L P
Sbjct: 246 TDLDLANNQISNLAP 260
Score = 57.3 bits (139), Expect = 3e-10
Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 8/130 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L+L+ N + + + N+ L L + + +T + L +N +
Sbjct: 290 TNLELNENQLEDI--SPISNL--KNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKV 343
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
S V SL + + ++ HN I ++ + I + +++ +
Sbjct: 344 SDVSSLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQAWTNAPVNYKANVSIP 401
Query: 177 DTLKLNGNKL 186
+T+K L
Sbjct: 402 NTVKNVTGAL 411
Score = 57.3 bits (139), Expect = 4e-10
Identities = 24/135 (17%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ +++N I + L +TN+ L L ++ +D + +TN++ L+LS N +
Sbjct: 93 VDILMNNNQIADI---TPLA-NLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTI 146
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
S + +L + L+ ++ N + + + + +D+S+ ++ I + +
Sbjct: 147 SDISALSGLTSLQQLSF-GNQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNL 201
Query: 177 DTLKLNGNKLASLKP 191
++L N+++ + P
Sbjct: 202 ESLIATNNQISDITP 216
Score = 56.9 bits (138), Expect = 4e-10
Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 10/131 (7%)
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
IN +IF + K L K + D + + + L + ++
Sbjct: 9 TQDTPIN----QIFTDTALAEKMKTVLGKTNVT--DTVSQTDLDQVTTLQADRLGIKSID 62
Query: 121 SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLK 180
+ Y+ L IN ++N + I+ ++ + I M+N QI I + + L
Sbjct: 63 GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLT 118
Query: 181 LNGNKLASLKP 191
L N++ + P
Sbjct: 119 LFNNQITDIDP 129
Score = 51.9 bits (125), Expect = 2e-08
Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 8/133 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L NNI+ + + +T +Q+L+ K+ V + +TN++ L N +
Sbjct: 312 TYLTLYFNNISDI---SPVS-SLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQI 365
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
S + L + + + L + + +
Sbjct: 366 SDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAP--ATISDGGSY 423
Query: 177 DTLKLNGNKLASL 189
+ N +
Sbjct: 424 TEPDITWNLPSYT 436
Score = 36.5 bits (85), Expect = 0.003
Identities = 8/84 (9%), Positives = 25/84 (29%), Gaps = 4/84 (4%)
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
D ++ + + + L + S + + I +I
Sbjct: 6 ATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI-- 61
Query: 168 EAFYGIDKIDTLKLNGNKLASLKP 191
+ ++ + + + N+L + P
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDITP 85
Score = 28.8 bits (65), Expect = 1.1
Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 4/68 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L+ + I N ++ + + E D++ NL
Sbjct: 378 TQLGLNDQAWTNAPVNYKANVSIPNT----VKNVTGALIAPATISDGGSYTEPDITWNLP 433
Query: 117 STVPSLIY 124
S + Y
Sbjct: 434 SYTNEVSY 441
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 63.0 bits (154), Expect = 6e-13
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP CSC TV+C ++ ++P GI TQVL L N I L+ +F ++ T +
Sbjct: 3 CPSQCSC----SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRL--TQL 56
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+L L +L + F +T + +L L+DN L ++P + + L I L +NP
Sbjct: 57 TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 63.0 bits (154), Expect = 6e-13
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP CSC + V C + ++P GI D Q L L++N I L+ +F + N+
Sbjct: 6 CPSQCSC----DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHL--VNL 59
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
Q+LY KL + F +T + +LDL+DN L ++P + + L I L +NP
Sbjct: 60 QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 61.9 bits (151), Expect = 1e-12
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP CSC + C + ++P GI L+L SN + L +F ++ T +
Sbjct: 1 CPSRCSC----SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKL--TQL 54
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS 121
KL L + +++ + D F +T + L L +N L ++P+
Sbjct: 55 TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 63.6 bits (155), Expect = 2e-12
Identities = 23/135 (17%), Positives = 58/135 (42%), Gaps = 10/135 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ +N+ + Q + I L + ++ + + N+ L+L DN +
Sbjct: 22 IKIAAGKSNVT----DTVTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQI 75
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
+ + L + + + L+ NP+ +S + I+ +D+++ QI + G+ +
Sbjct: 76 TDLAPLKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDV--TPLAGLSNL 131
Query: 177 DTLKLNGNKLASLKP 191
L L+ N++ ++ P
Sbjct: 132 QVLYLDLNQITNISP 146
Score = 59.3 bits (144), Expect = 5e-11
Identities = 22/135 (16%), Positives = 57/135 (42%), Gaps = 10/135 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L+LS N + K + G+ +I+ L L ++ V G++N+ L L N +
Sbjct: 88 TELELSGNPL----KNVSAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQI 141
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
+ + L + L+ +++ + + ++ + + + + +I I + +
Sbjct: 142 TNISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI--SPLASLPNL 197
Query: 177 DTLKLNGNKLASLKP 191
+ L N+++ + P
Sbjct: 198 IEVHLKNNQISDVSP 212
Score = 58.9 bits (143), Expect = 7e-11
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 10/139 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
QVL L N I + G+TN+Q L + ++ + ++ + L DN +
Sbjct: 132 QVLYLDLNQITNISP----LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKI 185
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
S + L +P L ++L +N I +S +T + + ++N I FY + +
Sbjct: 186 SDISPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ--PVFYNNNLV 241
Query: 177 DTLKLNGNKLASLKPRTWS 195
+ G A + P T S
Sbjct: 242 VPNVVKGPSGAPIAPATIS 260
Score = 45.4 bits (108), Expect = 3e-06
Identities = 12/88 (13%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
N ++ + ++ + + + +++ + I Q + +++ + QI
Sbjct: 19 ANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQIT 76
Query: 164 TIYSEAFYGIDKIDTLKLNGNKLASLKP 191
+ + KI L+L+GN L ++
Sbjct: 77 DL--APLKNLTKITELELSGNPLKNVSA 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 64.2 bits (156), Expect = 2e-12
Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 19/142 (13%)
Query: 48 IPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
+ E + L L+ N++ L + I L + + L + + +++
Sbjct: 53 LKECLINQFSELQLNRLNLSSLPDNLP-----PQITVLEITQNALISLPEL----PASLE 103
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
LD DN LST+P L LK +++ +N + + + YI+ N Q+ +
Sbjct: 104 YLDACDNRLSTLPEL--PASLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTMLPE 157
Query: 168 EAFYGIDKIDTLKLNGNKLASL 189
++ L + N+L L
Sbjct: 158 L----PTSLEVLSVRNNQLTFL 175
Score = 59.2 bits (143), Expect = 8e-11
Identities = 24/143 (16%), Positives = 59/143 (41%), Gaps = 20/143 (13%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
++P+ + VL+++ N + L + +++ L +L + + ++
Sbjct: 73 SLPDNLPPQITVLEITQNALISLPEL------PASLEYLDACDNRLSTLPEL----PASL 122
Query: 107 DELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
LD+ +N L+ +P L L+ IN +N + + + + + N Q+ +
Sbjct: 123 KHLDVDNNQLTMLPEL--PALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLP 176
Query: 167 SEAFYGIDKIDTLKLNGNKLASL 189
+ ++ L ++ N L SL
Sbjct: 177 EL----PESLEALDVSTNLLESL 195
Score = 49.2 bits (117), Expect = 2e-07
Identities = 23/133 (17%), Positives = 54/133 (40%), Gaps = 30/133 (22%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ ++ +N + +L + T+++ L +R +L F+ + +++ LD+S NLL
Sbjct: 143 EYINADNNQLTMLPELP------TSLEVLSVRNNQLTFLPE----LPESLEALDVSTNLL 192
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
++P++ +++ + + +I I E +D
Sbjct: 193 ESLPAVP----VRNHHS---------------EETEIFFRCRENRITHI-PENILSLDPT 232
Query: 177 DTLKLNGNKLASL 189
T+ L N L+S
Sbjct: 233 CTIILEDNPLSSR 245
Score = 46.9 bits (111), Expect = 1e-06
Identities = 15/115 (13%), Positives = 35/115 (30%), Gaps = 10/115 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV---TNMDELDLSD 113
+VL + +N + L + +++ L + LE + R +
Sbjct: 163 EVLSVRNNQLTFLPELP------ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRE 216
Query: 114 NLLSTVP-SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
N ++ +P +++ + +I L NP+ S
Sbjct: 217 NRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271
Score = 37.3 bits (86), Expect = 0.002
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 47 TIPEGID-LDTQVLDLSSNNINVLQKEIF-LQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104
+PE + L + LD+S+N + L R+ ++ + + +
Sbjct: 174 FLPELPESL--EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPE-NILSLD 230
Query: 105 NMDELDLSDNLLSTVP 120
+ L DN LS+
Sbjct: 231 PTCTIILEDNPLSSRI 246
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 61.6 bits (150), Expect = 8e-12
Identities = 29/135 (21%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L+ N + +I + N+ L+L + K++ + + + + + L L N +
Sbjct: 71 TKLFLNGNKL----TDIKPLANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGI 124
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
S + L+++P L+S+ L +N I I+ + + + + QI I G+ K+
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI--VPLAGLTKL 180
Query: 177 DTLKLNGNKLASLKP 191
L L+ N ++ L+
Sbjct: 181 QNLYLSKNHISDLRA 195
Score = 59.7 bits (145), Expect = 4e-11
Identities = 18/131 (13%), Positives = 51/131 (38%), Gaps = 10/131 (7%)
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
I +IF K L+K + D + ++D++ +++ + +V
Sbjct: 9 TVPTPIK----QIFSDDAFAETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKSVQ 62
Query: 121 SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLK 180
+ Y+P + + L N + I + + ++ + ++ + + + K+ +L
Sbjct: 63 GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLS 118
Query: 181 LNGNKLASLKP 191
L N ++ +
Sbjct: 119 LEHNGISDING 129
Score = 56.6 bits (137), Expect = 4e-10
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ ++++I +Q +Q + N+ KL+L KL + + N+ L L +N +
Sbjct: 49 DQIIANNSDIKSVQ---GIQ-YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
+ SL + LKS++L HN I I+ P + + + N +I I + K+
Sbjct: 103 KDLSSLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKL 158
Query: 177 DTLKLNGNKLASLKP 191
DTL L N+++ + P
Sbjct: 159 DTLSLEDNQISDIVP 173
Score = 49.7 bits (119), Expect = 1e-07
Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 6/134 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L L +N I + L +T + L L ++ + G+T + L LS N +
Sbjct: 137 ESLYLGNNKITDIT---VLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
S + +L + L + L + + ++ + T + G +
Sbjct: 191 SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEK 250
Query: 177 DTLKLNGNKLASLK 190
+K + + +
Sbjct: 251 PNVKWHLPEFTNEV 264
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 59.6 bits (145), Expect = 1e-11
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 29/123 (23%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVL--------------------- 59
+ CP C+C V C ++ +P+GI D L
Sbjct: 2 SRCPTECTCLDT----VVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLT 57
Query: 60 --DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
DLS+N I+ L + F M T + L L +L + R F G+ ++ L L N +S
Sbjct: 58 LIDLSNNRISTLSNQSFSNM--TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 118 TVP 120
VP
Sbjct: 116 VVP 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 57.4 bits (139), Expect = 7e-11
Identities = 22/134 (16%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
++ L++ I + ++L LR K+ +++ + D +D SDN +
Sbjct: 1 MVKLTAELIEQAAQYTNA----VRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIR 55
Query: 118 TVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS-EAFYGIDKI 176
+ + LK++ + +N I +I Q+ P + + ++N + + + + +
Sbjct: 56 KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115
Query: 177 DTLKLNGNKLASLK 190
L + N + + K
Sbjct: 116 TYLCILRNPVTNKK 129
Score = 47.3 bits (113), Expect = 3e-07
Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 10/106 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+D S N I L L ++ L + ++ + + + + ++ EL L++N L
Sbjct: 45 DAIDFSDNEIRKLDGFPLL----RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100
Query: 117 STVPSLIYI---PYLKSINLAHNPIHQISSYS---FQSTPGIRYID 156
+ L + L + + NP+ Y P +R +D
Sbjct: 101 VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 58.4 bits (141), Expect = 1e-10
Identities = 28/138 (20%), Positives = 44/138 (31%), Gaps = 13/138 (9%)
Query: 57 QVLDLSSNNINVLQ--KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD---ELDL 111
LDLS N + + +Q L LR +E LDL
Sbjct: 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235
Query: 112 SDNLLSTVPSLI---YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
S N L + L S+NL+ + Q+ + +D+S ++ S
Sbjct: 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLDRNPSP 292
Query: 169 AFYGIDKIDTLKLNGNKL 186
++ L L GN
Sbjct: 293 DELP--QVGNLSLKGNPF 308
Score = 56.1 bits (135), Expect = 8e-10
Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 12/155 (7%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEI--FLQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104
+ E D +L+L + + + Q ++ L + + R
Sbjct: 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173
Query: 105 NMDELDLSDNLLSTVPSLI------YIPYLKSINLAHNPIHQISSYSFQST---PGIRYI 155
+ LDLSDN LI P L+ + L + + S ++ +
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233
Query: 156 DMSNCQIHTI-YSEAFYGIDKIDTLKLNGNKLASL 189
D+S+ + + + ++++L L+ L +
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 57.7 bits (140), Expect = 2e-10
Identities = 24/157 (15%), Positives = 57/157 (36%), Gaps = 6/157 (3%)
Query: 36 RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFV 95
T+ P+ +T +L ++ + + +I ++ ++ V
Sbjct: 1 ETITVSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQN----ELNSIDQIIANNSDIKSV 56
Query: 96 DDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYI 155
+ + N+ L L N L + +L + L + L N + + + F ++ +
Sbjct: 57 Q--GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114
Query: 156 DMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPR 192
+ Q+ ++ F + + L L N+L SL
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151
Score = 48.1 bits (115), Expect = 3e-07
Identities = 35/193 (18%), Positives = 72/193 (37%), Gaps = 33/193 (17%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDL-----------------------DTQ 57
P + ++ +L + +
Sbjct: 11 QIFPDDAFAE----TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVR 66
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
L L N ++ + +TN+ L L +L+ + + F +TN+ EL L +N L
Sbjct: 67 YLALGGNKLHDI--SAL--KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122
Query: 118 TVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK 175
++P ++ + L +NLAHN + + F + +D+S Q+ ++ F + +
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182
Query: 176 IDTLKLNGNKLAS 188
+ L+L N+L S
Sbjct: 183 LKDLRLYQNQLKS 195
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 56.5 bits (137), Expect = 2e-10
Identities = 20/137 (14%), Positives = 57/137 (41%), Gaps = 11/137 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L +++ + + G++N+++L + + G+T++ LD+S +
Sbjct: 69 KDLTINNIHATNYN---PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124
Query: 117 S--TVPSLIYIPYLKSINLAHNPIHQISSYS-FQSTPGIRYIDMSNCQIHTIYSEAFYGI 173
+ + +P + SI+L++N I+ ++ P ++ +++ +H
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNG--AITDIMPLKTLPELKSLNIQFDGVHDY--RGIEDF 180
Query: 174 DKIDTLKLNGNKLASLK 190
K++ L + K
Sbjct: 181 PKLNQLYAFSQTIGGKK 197
Score = 44.2 bits (105), Expect = 5e-06
Identities = 11/128 (8%), Positives = 43/128 (33%), Gaps = 7/128 (5%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
L ++ + + + ++ + L + D N+ +L +++ +
Sbjct: 28 GLLGQSSTANITEA-----QMNSLTYITLANINVT--DLTGIEYAHNIKDLTINNIHATN 80
Query: 119 VPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDT 178
+ + L+ + + + + + +D+S+ + K+++
Sbjct: 81 YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140
Query: 179 LKLNGNKL 186
+ L+ N
Sbjct: 141 IDLSYNGA 148
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 57.8 bits (139), Expect = 3e-10
Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 13/136 (9%)
Query: 29 CKWKAGKRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
K + V + T+ ++ L LDLS N + L + + ++ L
Sbjct: 436 LKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPAL---AALRCLEVLQ 492
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYI---PYLKSINLAHNPIHQISS 143
LE VD + + EL L +N L ++ + P L +NL N + Q
Sbjct: 493 ASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550
Query: 144 YS---FQSTPGIRYID 156
+ P + I
Sbjct: 551 IQERLAEMLPSVSSIL 566
Score = 48.2 bits (114), Expect = 5e-07
Identities = 15/134 (11%), Positives = 43/134 (32%), Gaps = 5/134 (3%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L + + L + K + ++ L L+ L
Sbjct: 396 DPLLYEKETLQYFST--LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL 453
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
+ + L + + ++L+HN + + + + + + S+ + + + + ++
Sbjct: 454 TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV--DGVANLPRL 510
Query: 177 DTLKLNGNKLASLK 190
L L N+L
Sbjct: 511 QELLLCNNRLQQSA 524
Score = 47.8 bits (113), Expect = 7e-07
Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 6/131 (4%)
Query: 30 KWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK 89
A + ++ + D +VL L+ ++ VL L+ + + L L
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL---CHLEQ-LLLVTHLDLSH 472
Query: 90 CKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSY-SFQS 148
+L + A + ++ L SDN L V + +P L+ + L +N + Q ++ S
Sbjct: 473 NRLRALPP-ALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVS 531
Query: 149 TPGIRYIDMSN 159
P + +++
Sbjct: 532 CPRLVLLNLQG 542
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 56.2 bits (136), Expect = 1e-09
Identities = 19/142 (13%), Positives = 59/142 (41%), Gaps = 18/142 (12%)
Query: 48 IPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
+ + +D L+L++ ++ L + +++ L L + + + + ++
Sbjct: 65 LRDCLDRQAHELELNNLGLSSLPEL------PPHLESLVASCNSLTELPE-LPQSLKSLL 117
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
+ + LS +P P L+ + +++N + ++ Q++ ++ ID+ N + +
Sbjct: 118 VDNNNLKALSDLP-----PLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKL-- 168
Query: 168 EAFYGIDKIDTLKLNGNKLASL 189
++ + N+L L
Sbjct: 169 --PDLPPSLEFIAAGNNQLEEL 188
Score = 55.8 bits (135), Expect = 1e-09
Identities = 19/133 (14%), Positives = 53/133 (39%), Gaps = 13/133 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ + +N + L + L + +Y L+ + D +++ + +N+L
Sbjct: 176 EFIAAGNNQLEELPELQNL----PFLTAIYADNNSLKKLPD----LPLSLESIVAGNNIL 227
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
+P L +P+L +I +N + + P + +++ + + + E + +
Sbjct: 228 EELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDL-PELPQSLTFL 282
Query: 177 DTLKLNGNKLASL 189
D + + L+ L
Sbjct: 283 DVSENIFSGLSEL 295
Score = 52.7 bits (127), Expect = 1e-08
Identities = 23/133 (17%), Positives = 54/133 (40%), Gaps = 20/133 (15%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ +N + L +++ L +R L + + ++ LD+S+N+
Sbjct: 240 TTIYADNNLLKTLPDLP------PSLEALNVRDNYLTDLPE----LPQSLTFLDVSENIF 289
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
S + L P L +N + N I + P + +++SN ++ + + ++
Sbjct: 290 SGLSEL--PPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIELPAL----PPRL 339
Query: 177 DTLKLNGNKLASL 189
+ L + N LA +
Sbjct: 340 ERLIASFNHLAEV 352
Score = 52.7 bits (127), Expect = 1e-08
Identities = 24/146 (16%), Positives = 54/146 (36%), Gaps = 17/146 (11%)
Query: 44 NFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
++PE + L S N++ L + + ++ L +
Sbjct: 82 GLSSLPELPP-HLESLVASCNSLTELPELPQ---SLKSLLVDNNNLKALSDL-------P 130
Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
++ L +S+N L +P L +LK I++ +N + ++ P + +I N Q+
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLE 186
Query: 164 TIYSEAFYGIDKIDTLKLNGNKLASL 189
+ + + + + N L L
Sbjct: 187 ELPE--LQNLPFLTAIYADNNSLKKL 210
Score = 51.5 bits (124), Expect = 3e-08
Identities = 22/133 (16%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LD+S N + L + N+ L ++ + D +++EL++S+N L
Sbjct: 280 TFLDVSENIFSGLSELP------PNLYYLNASSNEIRSLCDL----PPSLEELNVSNNKL 329
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
+P+L P L+ + + N + ++ ++ + + + + +
Sbjct: 330 IELPAL--PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDI----PESV 379
Query: 177 DTLKLNGNKLASL 189
+ L++N + LA +
Sbjct: 380 EDLRMN-SHLAEV 391
Score = 50.8 bits (122), Expect = 5e-08
Identities = 23/150 (15%), Positives = 51/150 (34%), Gaps = 31/150 (20%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L+ SSN I L ++++L + KL + ++ L S N L
Sbjct: 300 YYLNASSNEIRSLCDLP------PSLEELNVSNNKLIELPA----LPPRLERLIASFNHL 349
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISS--------------YSFQSTPG-IRYIDMSNCQ 161
+ VP L LK +++ +NP+ + P ++ + +
Sbjct: 350 AEVPELP--QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407
Query: 162 IHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
+ + ++ L++N ++
Sbjct: 408 LREFPDI----PESVEDLRMNSERVVDPYE 433
Score = 48.8 bits (117), Expect = 2e-07
Identities = 14/122 (11%), Positives = 39/122 (31%), Gaps = 23/122 (18%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD---------------RAFR 101
+ L S N++ + + N+++L++ L D
Sbjct: 340 ERLIASFNHLAEVPELP------QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393
Query: 102 GVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQ 161
N+ +L + N L P + ++ + + + ++ ++T + +
Sbjct: 394 LPQNLKQLHVETNPLREFPDIP--ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451
Query: 162 IH 163
H
Sbjct: 452 HH 453
Score = 43.8 bits (104), Expect = 1e-05
Identities = 24/146 (16%), Positives = 53/146 (36%), Gaps = 26/146 (17%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD--------- 107
Q S+N+ + E + + + Y + E M
Sbjct: 14 QEPLRHSSNLTEMPVEAE---NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70
Query: 108 ----ELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
EL+L++ LS++P L P+L+S+ + N + ++ QS + + + +
Sbjct: 71 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPE-LPQSLKSLLVDNNNLKALS 127
Query: 164 TIYSEAFYGIDKIDTLKLNGNKLASL 189
+ ++ L ++ N+L L
Sbjct: 128 DL-------PPLLEYLGVSNNQLEKL 146
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 54.6 bits (132), Expect = 2e-09
Identities = 20/130 (15%), Positives = 50/130 (38%), Gaps = 9/130 (6%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L ++ N + L + +L+L +L D + N++ L + +N L
Sbjct: 88 EELSVNRNRLKNLNGIPSA-----CLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKL 140
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
++ L ++ L+ ++L N I + +ID++ + + +
Sbjct: 141 KSIVMLGFLSKLEVLDLHGNEITNTG--GLTRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198
Query: 177 DTLKLNGNKL 186
+T+K +
Sbjct: 199 NTVKDPDGRW 208
Score = 52.7 bits (127), Expect = 9e-09
Identities = 25/135 (18%), Positives = 60/135 (44%), Gaps = 11/135 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
Q + ++NI L +Q TN+++L+L ++ + + +T ++EL ++ N L
Sbjct: 44 QNFNGDNSNIQSLA---GMQ-FFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNRL 97
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
+ + L + L +N + S + + + N ++ +I + K+
Sbjct: 98 KNLNGI-PSACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSI--VMLGFLSKL 152
Query: 177 DTLKLNGNKLASLKP 191
+ L L+GN++ +
Sbjct: 153 EVLDLHGNEITNTGG 167
Score = 51.9 bits (125), Expect = 2e-08
Identities = 20/131 (15%), Positives = 52/131 (39%), Gaps = 11/131 (8%)
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
IN ++F G+ N K L K + D + + ++ + + ++ + ++
Sbjct: 4 QRPTPIN----QVFPDPGLANAVKQNLGKQSVT--DLVSQKELSGVQNFNGDNSNIQSLA 57
Query: 121 SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLK 180
+ + LK ++L+HN I +S + + + ++ ++ + + L
Sbjct: 58 GMQFFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNRLKNLNGIPS---ACLSRLF 112
Query: 181 LNGNKLASLKP 191
L+ N+L
Sbjct: 113 LDNNELRDTDS 123
Score = 35.4 bits (82), Expect = 0.006
Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
E ++ V + NL + + S + G++ + N I ++
Sbjct: 1 ESIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-- 56
Query: 168 EAFYGIDKIDTLKLNGNKLASLKP 191
+ L L+ N+++ L P
Sbjct: 57 AGMQFFTNLKELHLSHNQISDLSP 80
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 52.4 bits (126), Expect = 2e-08
Identities = 20/133 (15%), Positives = 42/133 (31%), Gaps = 14/133 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L+ +N + L + L + L +D T + ELD N
Sbjct: 109 TYLNCDTNKLTKLDVS-----QNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKK 160
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
T + L +++ + N +I+ + ++ I + ++
Sbjct: 161 ITKLDVTPQTQLTTLDCSFN---KITELDVSQNKLLNRLNCDTNNITKL---DLNQNIQL 214
Query: 177 DTLKLNGNKLASL 189
L + NKL +
Sbjct: 215 TFLDCSSNKLTEI 227
Score = 50.5 bits (121), Expect = 8e-08
Identities = 15/135 (11%), Positives = 37/135 (27%), Gaps = 14/135 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
D S N + L + + L+ + L +D T +
Sbjct: 236 TYFDCSVNPLTELDVSTL-----SKLTTLHCIQTDLLEID---LTHNTQLIYFQAEGCRK 287
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
+ + L ++ I+ P + Y+ ++N ++ + K+
Sbjct: 288 IKELDVTHNTQLYLLDCQAA---GITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKL 341
Query: 177 DTLKLNGNKLASLKP 191
+L +
Sbjct: 342 KSLSCVNAHIQDFSS 356
Score = 48.9 bits (117), Expect = 2e-07
Identities = 16/109 (14%), Positives = 33/109 (30%), Gaps = 12/109 (11%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LD S N I L + +L + +D + LD S N L
Sbjct: 173 TTLDCSFNKITELDVS-----QNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKL 224
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + + + L + + N ++ + + + + I
Sbjct: 225 TEID-VTPLTQLTYFDCSVN---PLTELDVSTLSKLTTLHCIQTDLLEI 269
Score = 48.5 bits (116), Expect = 4e-07
Identities = 22/135 (16%), Positives = 48/135 (35%), Gaps = 14/135 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
LD +++I + I +T + KL + +D TN+ L N L
Sbjct: 45 TSLDCHNSSITDM-TGIE---KLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKL 97
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
+ + + + L +N N +++ P + Y++ + + I ++
Sbjct: 98 TNLD-VTPLTKLTYLNCDTN---KLTKLDVSQNPLLTYLNCARNTLTEI---DVSHNTQL 150
Query: 177 DTLKLNGNKLASLKP 191
L + NK +
Sbjct: 151 TELDCHLNKKITKLD 165
Score = 48.1 bits (115), Expect = 5e-07
Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 14/133 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L +SNNI L Q TN+ L KL +D +T + L+ N L
Sbjct: 67 TKLICTSNNITTLD---LSQN--TNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKL 118
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
+ + P L +N A N ++ + +D + I ++
Sbjct: 119 TKLDVSQ-NPLLTYLNCARN---TLTEIDVSHNTQLTELDCHLNKK--ITKLDVTPQTQL 172
Query: 177 DTLKLNGNKLASL 189
TL + NK+ L
Sbjct: 173 TTLDCSFNKITEL 185
Score = 47.8 bits (114), Expect = 6e-07
Identities = 14/109 (12%), Positives = 39/109 (35%), Gaps = 6/109 (5%)
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQ 140
N +++ D + + + LD ++ ++ + + + L + N
Sbjct: 19 NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSN---N 75
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
I++ + Y+ + ++ + + K+ L + NKL L
Sbjct: 76 ITTLDLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKL 121
Score = 43.1 bits (102), Expect = 2e-05
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 8/93 (8%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+LD + I E+ L + LYL +L +D T + L + +
Sbjct: 300 YLLDCQAAGI----TELDLS-QNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHI 351
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQST 149
S+ IP L + A + + +
Sbjct: 352 QDFSSVGKIPALNNNFEAEGQTITMPKETLTNN 384
Score = 33.1 bits (76), Expect = 0.052
Identities = 11/89 (12%), Positives = 28/89 (31%), Gaps = 14/89 (15%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L L++ + L T ++ L ++ + + ++ ++
Sbjct: 321 VYLYLNNTELTELDVS-----HNTKLKSLSCVNAHIQDFS--SVGKIPALNNNFEAEGQT 373
Query: 117 STVP-------SLIYIPYLKSINLAHNPI 138
T+P SL ++ NP+
Sbjct: 374 ITMPKETLTNNSLTIAVSPDLLDQFGNPM 402
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 50.5 bits (121), Expect = 2e-08
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
N++ L L + L +V +L +P LK + L+ N I + P + ++++S ++
Sbjct: 49 VNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108
Query: 164 TIYS-EAFYGIDKIDTLKLNGNKLASLK 190
I + E ++ + +L L ++ +L
Sbjct: 109 DISTLEPLKKLECLKSLDLFNCEVTNLN 136
Score = 49.0 bits (117), Expect = 6e-08
Identities = 22/106 (20%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L L + + + ++ ++KL L + ++ D + N+ L+LS N L
Sbjct: 52 EFLSLINVGLISV--SNLPKL--PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107
Query: 117 STVPSLIYI---PYLKSINLAHNPIHQISSYS---FQSTPGIRYID 156
+ +L + LKS++L + + ++ Y F+ P + Y+D
Sbjct: 108 KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens}
PDB: 3rez_A*
Length = 130
Score = 48.6 bits (116), Expect = 6e-08
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 23 CPLGCSCKWKAGKRTVECIDRN--FYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
CP CSC V+C R + ++P +DT L L+ NN+ L + +
Sbjct: 2 CPAPCSCA----GTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDAL--P 55
Query: 81 NIQKLYLR 88
++ +L
Sbjct: 56 ALRTAHLG 63
Score = 29.4 bits (66), Expect = 0.35
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 104 TNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNP 137
+ EL L+ N L+ +P L +P L++ +L NP
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 48.5 bits (116), Expect = 8e-08
Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL- 115
+ L + + + ++ ++KL L ++ + N+ L+LS N
Sbjct: 45 EFLSTINVGLTSI--ANLPKL--NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100
Query: 116 --LSTVPSLIYIPYLKSINLAHNPIHQISSYS---FQSTPGIRYID 156
LST+ L + LKS++L + + ++ Y F+ P + Y+D
Sbjct: 101 KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146
Score = 47.7 bits (114), Expect = 2e-07
Identities = 16/112 (14%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 81 NIQKLYLRKCKLEFVDDRA-FRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIH 139
++++L L + ++ L + L+++ +L + LK + L+ N +
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVS 77
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYS-EAFYGIDKIDTLKLNGNKLASLK 190
+ P + ++++S +I + + E ++ + +L L ++ +L
Sbjct: 78 GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 48.6 bits (117), Expect = 9e-08
Identities = 15/136 (11%), Positives = 43/136 (31%), Gaps = 7/136 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L + L+ + + KL +L + A + +L L
Sbjct: 7 SKLQEIYQELTRLKAAVG---ELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQEL 62
Query: 117 STVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK 175
+ + + + +P + + + ++ + + P + ++ + A + +
Sbjct: 63 TRLKAAVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTEL-KAAVGELPE 120
Query: 176 IDTLKLNGNKLASLKP 191
L+ +L LK
Sbjct: 121 KSKLQEIYQELTQLKA 136
Score = 48.6 bits (117), Expect = 1e-07
Identities = 14/136 (10%), Positives = 41/136 (30%), Gaps = 7/136 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L + L+ + + KL +L + A + +L L
Sbjct: 30 SKLQEIYQELTRLKAAVG---ELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQEL 85
Query: 117 STVPSLI-YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK 175
+ + + + +P + + + ++ + + P + ++ + A +
Sbjct: 86 TRLKAAVGELPEKSKLQEIYQELTELKA-AVGELPEKSKLQEIYQELTQL-KAAVGELPD 143
Query: 176 IDTLKLNGNKLASLKP 191
+ +L LK
Sbjct: 144 QSKQQQIYQELTDLKT 159
Score = 40.5 bits (96), Expect = 8e-05
Identities = 9/89 (10%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 104 TNMDELDLSDNLLSTVPSLI-YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
+L L+ + + + +P + + + ++ + + P + ++
Sbjct: 4 PEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQEL 62
Query: 163 HTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
+ A + + L+ +L LK
Sbjct: 63 TRL-KAAVGELPEKSKLQEIYQELTRLKA 90
Score = 35.5 bits (83), Expect = 0.004
Identities = 7/67 (10%), Positives = 19/67 (28%), Gaps = 4/67 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
L + L+ + + KL +L + A + + + L
Sbjct: 99 SKLQEIYQELTELKAAVG---ELPEKSKLQEIYQELTQLKA-AVGELPDQSKQQQIYQEL 154
Query: 117 STVPSLI 123
+ + +
Sbjct: 155 TDLKTAF 161
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 46.2 bits (110), Expect = 1e-06
Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 14/120 (11%)
Query: 71 KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKS 130
+++ L I I+K+ D + L LS N + + SL + L+
Sbjct: 26 EKVELHGMIPPIEKM-----------DATLSTLKACKHLALSTNNIEKISSLSGMENLRI 74
Query: 131 INLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLK 190
++L N I +I + + + +S QI ++ + + L ++ NK+ +
Sbjct: 75 LSLGRNLIKKIENLD-AVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWG 131
Score = 45.1 bits (107), Expect = 3e-06
Identities = 17/113 (15%), Positives = 47/113 (41%), Gaps = 18/113 (15%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
++L L N I ++ L +++L++ ++ + + N+ L +S+N +
Sbjct: 73 RILSLGRNLIKKIEN---LDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKI 127
Query: 117 STVPSLIYI---PYLKSINLAHNPIHQISSYSFQST----------PGIRYID 156
+ + + L+ + LA NP++ + ++ P ++ +D
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
Score = 40.4 bits (95), Expect = 9e-05
Identities = 18/87 (20%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L LS+NNI + L G+ N++ L L + ++ +++ ++EL +S N +
Sbjct: 51 KHLALSTNNIEKIS---SLS-GMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQI 105
Query: 117 STVPSLIYIPYLKSINLAHNPIHQISS 143
+++ + + L+ + +++N I
Sbjct: 106 ASLSGIEKLVNLRVLYMSNNKITNWGE 132
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 46.8 bits (112), Expect = 1e-06
Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 22/140 (15%)
Query: 57 QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV------TNMDEL 109
+VLDLS+N+I+ L G ++ L + K+ G N++ L
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS--------GDVDVSRCVNLEFL 205
Query: 110 DLSDNLLS-TVPSLIYIPYLKSINLAHNPIH-QISSYSFQSTPGIRYIDMSNCQIH-TIY 166
D+S N S +P L L+ ++++ N + S + + ++ +++S+ Q I
Sbjct: 206 DVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIP 264
Query: 167 SEAFYGIDKIDTLKLNGNKL 186
+ L L NK
Sbjct: 265 PLPLK---SLQYLSLAENKF 281
Score = 44.9 bits (107), Expect = 7e-06
Identities = 21/134 (15%), Positives = 56/134 (41%), Gaps = 7/134 (5%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE---FVDDRAFRGVTNMDELDLSD 113
+ L++SSN ++ ++ + + +++ L L + V G + L +S
Sbjct: 129 KFLNVSSNTLD-FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187
Query: 114 NLLSTVPSLIYIPYLKSINLAHNPIH-QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
N +S + L+ ++++ N I ++++D+S ++ +S A
Sbjct: 188 NKISGDVDVSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAIST 245
Query: 173 IDKIDTLKLNGNKL 186
++ L ++ N+
Sbjct: 246 CTELKLLNISSNQF 259
Score = 43.0 bits (102), Expect = 3e-05
Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 10/114 (8%)
Query: 57 QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLE-FVDDRAFRGVTNMDELDLSDN 114
LDLS N+ + + ++ L L + + + LDLS N
Sbjct: 297 TGLDLSGNHFYGAVPPFFG---SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 115 LLS-TVPSLIY--IPYLKSINLAHNPIH-QISSYSFQST-PGIRYIDMSNCQIH 163
S +P + L +++L+ N I Q+ ++ + + N
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Score = 42.2 bits (100), Expect = 5e-05
Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 6/132 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ LD+SSNN + + + +Q L + KL RA T + L++S N
Sbjct: 203 EFLDVSSNNFSTGIPFLG---DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 117 S-TVPSLIYIPYLKSINLAHNPIH-QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGID 174
+P L + L+ ++LA N +I + + + +D+S + F
Sbjct: 260 VGPIPPLP-LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 175 KIDTLKLNGNKL 186
+++L L+ N
Sbjct: 319 LLESLALSSNNF 330
Score = 41.8 bits (99), Expect = 7e-05
Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 6/110 (5%)
Query: 57 QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
LDLSSNN + + + Q +Q+LYL+ + + L LS N
Sbjct: 371 LTLDLSSNNFSGPILPNLC-QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 116 LS-TVP-SLIYIPYLKSINLAHNPIH-QISSYSFQSTPGIRYIDMSNCQI 162
LS T+P SL + L+ + L N + +I + + + +
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ-ELMYVKTLETLILDFNDL 478
Score = 36.8 bits (86), Expect = 0.003
Identities = 17/115 (14%), Positives = 44/115 (38%), Gaps = 11/115 (9%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL--EFVDDRAFRGVTNMDELDLSDN 114
+ L LS+++ + + ++ L L + L + + + L++S N
Sbjct: 80 ESLFLSNSH---INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN 136
Query: 115 LLS---TVPSLIYIPYLKSINLAHNPIHQ---ISSYSFQSTPGIRYIDMSNCQIH 163
L V + + L+ ++L+ N I + ++++ +S +I
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191
Score = 36.4 bits (85), Expect = 0.004
Identities = 17/96 (17%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 104 TNMDELDLSDNLLS-TVPSLIYIPYLKSINLAHNPIH-QISS-YSFQSTPGIRYIDMSNC 160
T ++ L LS++ ++ +V L S++L+ N + +++ S S G++++++S+
Sbjct: 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN 136
Query: 161 QIH-TIYSEAFYGIDKIDTLKLNGNKLASLKPRTWS 195
+ ++ ++ L L+ N ++ W
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172
Score = 34.9 bits (81), Expect = 0.014
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 47 TIPEGIDLDTQVLDLS-SNNINVLQKEIFLQMG-ITNIQKLYLRKCKLEFVDDRAFRGVT 104
I D + + N+ Q Q+ ++ + F
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 105 NMDELDLSDNLLS-TVP-SLIYIPYLKSINLAHN 136
+M LD+S N+LS +P + +PYL +NL HN
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666
Score = 31.4 bits (72), Expect = 0.16
Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 12/108 (11%)
Query: 57 QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
LDL++N N + +F Q + + + E + NL
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQS-------GKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593
Query: 116 LSTV----PSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN 159
L L + N+ +S +F + + ++DMS
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641
Score = 31.0 bits (71), Expect = 0.21
Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 24/141 (17%)
Query: 57 QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV--------TNMD 107
+ LS+N + + K I + N+ L L G ++
Sbjct: 493 NWISLSNNRLTGEIPKWIG---RLENLAILKLSNNSFS--------GNIPAELGDCRSLI 541
Query: 108 ELDLSDNLLS-TVPS-LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
LDL+ NL + T+P+ + + N + + + I
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR--YVYIKNDGMKKECHGAGNLLEFQGI 599
Query: 166 YSEAFYGIDKIDTLKLNGNKL 186
SE + + +
Sbjct: 600 RSEQLNRLSTRNPCNITSRVY 620
Score = 30.6 bits (70), Expect = 0.36
Identities = 8/92 (8%), Positives = 30/92 (32%), Gaps = 4/92 (4%)
Query: 47 TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
TIP + Q +++N I + G+ + + + ++
Sbjct: 553 TIPAAMFK--QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610
Query: 107 DELDLSDNLLS-TVPSLIYI-PYLKSINLAHN 136
+ +++ + + +++++N
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642
Score = 28.7 bits (65), Expect = 1.3
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 104 TNMDELDLSDNLLS-TVP-SLIYIPYLKSINLAHN 136
++ LDLS N L +P ++ + L I+L++N
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
Score = 27.6 bits (62), Expect = 2.9
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 108 ELDLSDNLLSTV-----PSLIYIPYLKSINLAHNPIH-QISSYSFQSTPGIRYIDMSNCQ 161
+DLS L+ SL+ + L+S+ L+++ I+ +S F+ + + +D+S
Sbjct: 54 SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS--GFKCSASLTSLDLSRNS 111
Query: 162 IH 163
+
Sbjct: 112 LS 113
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 42.6 bits (101), Expect = 3e-05
Identities = 23/143 (16%), Positives = 53/143 (37%), Gaps = 14/143 (9%)
Query: 59 LDLSSNNINVLQK--EIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ + L+ ++ L LR L D ++++ + + L
Sbjct: 58 PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGL 116
Query: 117 STVPSLI-YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNC-QIHTI--------Y 166
+P + L+++ LA NP+ + + S S +R + + C ++ +
Sbjct: 117 MELPDTMQQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDA 175
Query: 167 SEAFYGIDKIDTLKLNGNKLASL 189
S G+ + +L+L + SL
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRSL 198
Score = 39.5 bits (93), Expect = 3e-04
Identities = 29/144 (20%), Positives = 60/144 (41%), Gaps = 15/144 (10%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLE--------FVDDRAFRGVTNMD 107
+ L L+ N + L I + +++L +R C +L +G+ N+
Sbjct: 130 ETLTLARNPLRALPASIA---SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186
Query: 108 ELDLSDNLLSTVPSLI-YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
L L + ++P+ I + LKS+ + ++P+ + + P + +D+ C Y
Sbjct: 187 SLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNY 245
Query: 167 SEAFYGIDKIDTLKL-NGNKLASL 189
F G + L L + + L +L
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTL 269
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 38.3 bits (90), Expect = 7e-04
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 47 TIPEGI-DLDTQVLDLSSNNINVLQKEIFLQMG-ITNIQKLYLRKCKLEFVDDRAFRGVT 104
IP +L+ +DLS N L+ + + G N QK++L K L F D
Sbjct: 189 KIPPTFANLNLAFVDLSRNM---LEGDASVLFGSDKNTQKIHLAKNSLAF-DLGKVGLSK 244
Query: 105 NMDELDLSDNLLS-TVP-SLIYIPYLKSINLAHN 136
N++ LDL +N + T+P L + +L S+N++ N
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Score = 32.9 bits (76), Expect = 0.045
Identities = 17/114 (14%), Positives = 36/114 (31%), Gaps = 23/114 (20%)
Query: 57 QVLDLSSNNIN-VLQKEIFLQMGITN-IQKLYLRKCKL------EFVDDRAFRGVTNMDE 108
+ N I+ + + + + + +L F N+
Sbjct: 152 VGITFDGNRISGAIPDSYG---SFSKLFTSMTISRNRLTGKIPPTF-------ANLNLAF 201
Query: 109 LDLSDNLLS-TVPSLIY-IPYLKSINLAHNPIH-QISSYSFQSTPGIRYIDMSN 159
+DLS N+L L + I+LA N + + + + +D+ N
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRN 253
Score = 27.9 bits (63), Expect = 1.9
Identities = 22/148 (14%), Positives = 44/148 (29%), Gaps = 36/148 (24%)
Query: 57 QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV--------TNMD 107
L ++ N++ + + I + L L G N+
Sbjct: 104 HYLYITHTNVSGAIPDFL---SQIKTLVTLDFSYNALS--------GTLPPSISSLPNLV 152
Query: 108 ELDLSDNLLS-TVP-SLIYIPYL-KSINLAHN----PI-HQISSYSFQSTPGIRYIDMSN 159
+ N +S +P S L S+ ++ N I ++ + ++D+S
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA------FVDLSR 206
Query: 160 CQIH-TIYSEAFYGIDKIDTLKLNGNKL 186
+ S F + L N L
Sbjct: 207 NMLEGDA-SVLFGSDKNTQKIHLAKNSL 233
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 36.9 bits (86), Expect = 0.003
Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 18/122 (14%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD----DRAFRGVTNMDELDLS 112
Q LD+ ++ + L + Q + L C L A R + EL+L
Sbjct: 6 QSLDIQCEELSDARWAELLP-LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64
Query: 113 DNLL--STVPSLIYI-----PYLKSINLAHNPI-----HQISSYSFQSTPGIRYIDMSNC 160
N L V ++ ++ ++L + + +SS + ++ P ++ + +S+
Sbjct: 65 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDN 123
Query: 161 QI 162
+
Sbjct: 124 LL 125
Score = 33.0 bits (76), Expect = 0.048
Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 24/127 (18%)
Query: 57 QVLDLSSNNIN-----VLQKEIFLQMGITNIQKLYLRKCKLEFVDDR----AFRGVTNMD 107
L+L SN + + + LQ IQKL L+ C L R + +
Sbjct: 59 AELNLRSNELGDVGVHCVLQG--LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116
Query: 108 ELDLSDNLLSTVPSLIYI--------PYLKSINLAHNPIHQIS----SYSFQSTPGIRYI 155
EL LSDNLL L + L+ + L + + S + ++ P + +
Sbjct: 117 ELHLSDNLLGD-AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 175
Query: 156 DMSNCQI 162
+SN I
Sbjct: 176 TVSNNDI 182
Score = 31.9 bits (73), Expect = 0.12
Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 18/125 (14%)
Query: 57 QVLDLSSNNIN---VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF----RGVTNMDEL 109
Q L LS N + + L ++KL L C L R + EL
Sbjct: 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 175
Query: 110 DLSDNLLSTV------PSLIYIPY-LKSINLAHNPIHQIS----SYSFQSTPGIRYIDMS 158
+S+N ++ L P L+++ L + + S +R + +
Sbjct: 176 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235
Query: 159 NCQIH 163
+ ++
Sbjct: 236 SNKLG 240
Score = 30.3 bits (69), Expect = 0.42
Identities = 8/66 (12%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 104 TNMDELDLSDNLLS--TVPSLI-YIPYLKSINLAHNPIHQIS----SYSFQSTPGIRYID 156
++ LD+ LS L+ + + + L + + S + + P + ++
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 157 MSNCQI 162
+ + ++
Sbjct: 63 LRSNEL 68
Score = 28.0 bits (63), Expect = 2.1
Identities = 28/155 (18%), Positives = 59/155 (38%), Gaps = 31/155 (20%)
Query: 57 QVLDLSSNNI-----NVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV----TNMD 107
+ L L+ N + +L + L ++ L+++ C F V +
Sbjct: 287 KELSLAGNELGDEGARLLCET--LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL 344
Query: 108 ELDLSDNLLST--VPSL-----IYIPYLKSINLAHNPI-----HQISSYSFQSTPGIRYI 155
EL +S+N L V L L+ + LA + +++ + + +R +
Sbjct: 345 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA-TLLANHSLREL 403
Query: 156 DMSNCQIHTIYSEAFYGIDKI-DTLKLNGNKLASL 189
D+SN + GI ++ ++++ G L L
Sbjct: 404 DLSNNCLGDA------GILQLVESVRQPGCLLEQL 432
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 36.6 bits (85), Expect = 0.003
Identities = 24/166 (14%), Positives = 45/166 (27%), Gaps = 36/166 (21%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGI--------TNIQKLYLRKCKLEFVDDRAF----RGVT 104
++ + S ++ EI + + + + L T
Sbjct: 63 EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122
Query: 105 NMDELDLSDNLLS---------------TVPSLIYIPYLKSINLAHNPIHQIS----SYS 145
++ L L +N L P L+SI N + S + +
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182
Query: 146 FQSTPGIRYIDMSNCQIH-----TIYSEAFYGIDKIDTLKLNGNKL 186
FQS + + M I + E ++ L L N
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228
Score = 32.8 bits (75), Expect = 0.054
Identities = 25/151 (16%), Positives = 53/151 (35%), Gaps = 29/151 (19%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGI---TNIQKLYLRKCKLEFVDD------RAFRGVTNMD 107
+ + N I E L G+ ++ L L+ A + N+
Sbjct: 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT--HLGSSALAIALKSWPNLR 247
Query: 108 ELDLSDNL--------LSTVPSLIYIPYLKSINLAHNPIHQ-----ISSYSFQSTPGIRY 154
EL L+D L + S + L+++ L +N I + + + P + +
Sbjct: 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307
Query: 155 IDMSNCQIHTIYSEAFYGIDKI-DTLKLNGN 184
++++ + SE +D+I + G
Sbjct: 308 LELNGNRF----SEEDDVVDEIREVFSTRGR 334
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 33.8 bits (77), Expect = 0.023
Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 15/122 (12%)
Query: 53 DLDTQVLDLSS--NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110
D Q LDL ++ +++ + I + + + LR + + L+
Sbjct: 126 DGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENI---------PELLSLN 176
Query: 111 LSDNLLSTVPSLIYI----PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
LS+N L + + I P LK +NL+ N + + + + + +
Sbjct: 177 LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTF 236
Query: 167 SE 168
+
Sbjct: 237 RD 238
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 33.2 bits (76), Expect = 0.038
Identities = 21/150 (14%), Positives = 51/150 (34%), Gaps = 22/150 (14%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV-----TNMDELDL 111
++L+S ++ L + +KL L+ L + R + + L L
Sbjct: 104 DEVNLASCQLDPAGLRTLLPV-FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRL 162
Query: 112 SDNLLSTV------PSLIYIPYLKSINLAHNPI-----HQISSYSFQSTPGIRYIDMSNC 160
S+N L+ L + ++L H + +++ ++ ++++
Sbjct: 163 SNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYN 221
Query: 161 QIHTIYSEAFYGI----DKIDTLKLNGNKL 186
+ A ++ L L N+L
Sbjct: 222 GAGDTAALALARAAREHPSLELLHLYFNEL 251
Score = 31.6 bits (72), Expect = 0.12
Identities = 15/120 (12%), Positives = 41/120 (34%), Gaps = 17/120 (14%)
Query: 59 LDLSSNNINVLQKEIF---LQMGITNIQKLYLRKCKLEFVDDRAF-RGVTNMDELDLSDN 114
L+L+ + ++ + L G + ++ L C+L+ R +L L N
Sbjct: 77 LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136
Query: 115 LLSTVPSLIYI--------PYLKSINLAHNPIHQIS----SYSFQSTPGIRYIDMSNCQI 162
L + + + ++ L++NP+ + ++ + + +
Sbjct: 137 SLG-PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL 195
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 31.3 bits (71), Expect = 0.12
Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 14/91 (15%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM-------DEL 109
Q +D + + I G+ ++K+ L KC +++D ++ + E+
Sbjct: 64 QAIDATDSCIM--SIGFDHMEGLQYVEKIRLCKCH--YIEDGCLERLSQLENLQKSMLEM 119
Query: 110 DLSDNLLSTVPSLIYI---PYLKSINLAHNP 137
++ T +I + LK + L+ P
Sbjct: 120 EIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150
Score = 25.6 bits (56), Expect = 8.7
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 151 GIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNK 185
I+ ID ++ I +I + G+ ++ ++L
Sbjct: 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 31.1 bits (70), Expect = 0.20
Identities = 15/124 (12%), Positives = 40/124 (32%), Gaps = 14/124 (11%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD---RAFRGVTNMDELDLSD 113
+ + ++ L + + +++ L L KC F D + L + +
Sbjct: 115 KSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS-GFTTDGLLSIVTHCRKIKTLLMEE 173
Query: 114 NLLST--VPSLIYI----PYLKSINLAHNPIHQISSYS----FQSTPGIRYIDMSNCQIH 163
+ S L + L+ +N +IS ++ + + + + +I
Sbjct: 174 SSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233
Query: 164 TIYS 167
+
Sbjct: 234 ELVG 237
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 30.4 bits (69), Expect = 0.37
Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 20/126 (15%)
Query: 57 QVLDLSSNNINVLQ-KEIF--LQMGITNIQKLYLRKCKLEFVDDRAFRGV-----TNMDE 108
LDLS NN+ + E+ ++ L L L F + + N+
Sbjct: 25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84
Query: 109 LDLSDNLLST------VPSLIYIPY-LKSINLAHNPI-----HQISSYSFQSTPGIRYID 156
L+LS N LS V +L IP+ + ++L N + I ++
Sbjct: 85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLN 144
Query: 157 MSNCQI 162
+ +
Sbjct: 145 LRGNDL 150
Score = 27.4 bits (61), Expect = 3.6
Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 20/126 (15%)
Query: 57 QVLDLSSNNINVLQKEIF---LQMGITNIQKLYLRKCKLEFVDDRAFRGV-----TNMDE 108
L+LS N++ + L N+ L L L + +
Sbjct: 54 TSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITV 113
Query: 109 LDLSDNLLSTV------PSLIYIP-YLKSINLAHNPIHQIS----SYSFQSTP-GIRYID 156
LDL N S+ + +P + S+NL N + S + P + ++
Sbjct: 114 LDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173
Query: 157 MSNCQI 162
+ +
Sbjct: 174 LRGNNL 179
Score = 25.8 bits (57), Expect = 9.2
Identities = 17/121 (14%), Positives = 37/121 (30%), Gaps = 36/121 (29%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNI-QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
LDLS+N + + + + L+L N
Sbjct: 199 TSLDLSANLLGL--------KSYAELAYIFSSIPNHVV--------------SLNLCLNC 236
Query: 116 LSTV------PSLIYIPYLKSINLAHNPIHQIS-------SYSFQSTPGIRYIDMSNCQI 162
L + +L+++ L ++ + +S +F + I +D + +I
Sbjct: 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296
Query: 163 H 163
H
Sbjct: 297 H 297
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.53
Identities = 22/155 (14%), Positives = 44/155 (28%), Gaps = 47/155 (30%)
Query: 53 DLDTQ-VLDLSSNNINVLQKEIF---LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDE 108
+ D + V D+ + +L KE + + + + V E
Sbjct: 32 NFDCKDVQDMPKS---ILSKEEIDHIIMSK-DAVSGTLRL---FWTLLSKQEEMVQKFVE 84
Query: 109 LDLSDN---LLSTV------PSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN 159
L N L+S + PS++ Y++ + +N + Y+ R
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-----R------ 133
Query: 160 CQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW 194
+ L+ L L+P
Sbjct: 134 -------------LQPYLKLR---QALLELRPAKN 152
Score = 29.4 bits (65), Expect = 0.97
Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 27/125 (21%)
Query: 53 DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA---FRGVTNMDEL 109
+L ++L + K++ + + L + D +
Sbjct: 263 NLSCKILLTTRF------KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 110 DLSDNLLSTVP---SLI---------YIPYLKSINLAHNPIHQI--SSYSFQSTPGIR-- 153
DL +L+T P S+I K +N + + I SS + R
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN--CDKLTTIIESSLNVLEPAEYRKM 374
Query: 154 YIDMS 158
+ +S
Sbjct: 375 FDRLS 379
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 29.5 bits (66), Expect = 0.74
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGV----TNMDELDLSD-NLLSTVPSLIYI----PYLKS 130
N+++L LR+ ++ V T++ L++S + +L + P LKS
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215
Query: 131 INLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT 164
+ L + + Q P + +
Sbjct: 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEV 249
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 26.8 bits (58), Expect = 5.1
Identities = 8/66 (12%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
Query: 57 QVLDLSSNNI-NVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF----RGVTNMDELDL 111
+ L + NV+ + + ++ + + L R + ++ +++
Sbjct: 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314
Query: 112 SDNLLS 117
N LS
Sbjct: 315 KYNYLS 320
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
hypothetical protein; 2.05A {Sinorhizobium meliloti}
Length = 218
Score = 26.2 bits (58), Expect = 5.7
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 24 PLGCSCKWKAGK 35
+GC+ KW AG
Sbjct: 198 SIGCNIKWTAGN 209
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 26.4 bits (58), Expect = 6.0
Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 18/118 (15%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV----TNMDELDLS 112
Q L L ++ + +N+ +L L C + A + + + +DEL+LS
Sbjct: 121 QNLSLEGLRLSDPIVNTLAKN--SNLVRLNLSGCS--GFSEFALQTLLSSCSRLDELNLS 176
Query: 113 DNLLSTVPSLIYI-----PYLKSINLAHNPIHQISSYSF----QSTPGIRYIDMSNCQ 161
T + + +NL+ + + P + ++D+S+
Sbjct: 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYR-KNLQKSDLSTLVRRCPNLVHLDLSDSV 233
>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome
condensation, condensin, non-SMC subunit, kleisin,
calcium, cell cycle, cell division; 2.90A {Escherichia
coli} PDB: 3rpu_A
Length = 440
Score = 26.2 bits (57), Expect = 7.6
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 50 EGIDLDTQVLDLSSNNINVLQKEIF-----LQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104
I +L +S + LQ + LQ + IQ + L FVD F +
Sbjct: 199 AAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQS 258
Query: 105 NMD 107
+D
Sbjct: 259 KLD 261
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 26.3 bits (58), Expect = 8.3
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 17/104 (16%)
Query: 78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPY---------L 128
+ N+ L + K + D F + ++ L +L I
Sbjct: 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH-------NLKTIGQRVFSNCGRLA 276
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
++ L + + I +F +RY+ + +I T+ E F
Sbjct: 277 GTLELPAS-VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGN 319
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate,
gamma-elimination, direct sulfhydrylation, CY
metabolism, protein thiocarboxylate, TR; 2.20A
{Wolinella succinogenes}
Length = 430
Score = 26.0 bits (58), Expect = 9.9
Identities = 2/13 (15%), Positives = 10/13 (76%)
Query: 137 PIHQISSYSFQST 149
P++ +++ F+++
Sbjct: 48 PVYDNAAFEFENS 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.415
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,861,581
Number of extensions: 157480
Number of successful extensions: 2215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 690
Number of HSP's successfully gapped: 399
Length of query: 195
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 106
Effective length of database: 4,216,824
Effective search space: 446983344
Effective search space used: 446983344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (24.8 bits)