BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14768
(452 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|390355996|ref|XP_786497.2| PREDICTED: ras-related protein Rab-7L1-like [Strongylocentrotus
purpuratus]
Length = 278
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 101/259 (38%), Positives = 157/259 (60%), Gaps = 17/259 (6%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG---VDFSTKLLS-HKKYGG 219
+ ++ + ++I GDS VGKT++V +V KF +K TVG T +L+ H G
Sbjct: 5 TEVKEKLFKVIIVGDSLVGKTTFVHRYVSGKFDPGFKTTVGGYRTYLDTLVLALHSGVGM 64
Query: 220 RPVKLQIWDIYCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 279
+ ++ + ++I GDS VGKT++V +V KF +K TVGVDF+
Sbjct: 65 DGA-----------TEVKEKLFKVIIVGDSLVGKTTFVHRYVSGKFDPGFKTTVGVDFAL 113
Query: 280 KLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKH 339
K + K V+LQ+WDIAGQ+R ++RVYY+++ C+IMFD+T RK+F +V+ WK+
Sbjct: 114 KKIERSKQD--IVRLQLWDIAGQERVSSLTRVYYKDASACVIMFDVTQRKTFNNVMNWKN 171
Query: 340 DLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
D++ K L NG+ +PCLLLA+K DLP V+ EI+ +C+ NF+ W ++S K++ IE
Sbjct: 172 DVEKKVALSNGSPVPCLLLANKIDLPSPNVKEEEIKELCNNNNFIGWNKISVKDNTNIEQ 231
Query: 400 SMNFLVDRIICSKRMEEEA 418
SMNFLV+ ++ M E+
Sbjct: 232 SMNFLVEEMLVQTSMARES 250
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 73/126 (57%), Gaps = 5/126 (3%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL--LSHKKYGGRPYGTF 163
E + K++++GDS VGKT++V +V KF +K TVG + T L L + G
Sbjct: 9 EKLFKVIIVGDSLVGKTTFVHRYVSGKFDPGFKTTVG-GYRTYLDTLVLALHSGVGMDGA 67
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
+ ++ + ++I GDS VGKT++V +V KF +K TVGVDF+ K + K V+
Sbjct: 68 TEVKEKLFKVIIVGDSLVGKTTFVHRYVSGKFDPGFKTTVGVDFALKKIERSKQD--IVR 125
Query: 224 LQIWDI 229
LQ+WDI
Sbjct: 126 LQLWDI 131
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 94 SVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 153
S +G + E + K++++GDS VGKT++V +V KF +K TVGVDF+ K +
Sbjct: 60 SGVGMDGATEVKEKLFKVIIVGDSLVGKTTFVHRYVSGKFDPGFKTTVGVDFALKKIERS 119
Query: 154 K 154
K
Sbjct: 120 K 120
>gi|321478953|gb|EFX89909.1| hypothetical protein DAPPUDRAFT_39774 [Daphnia pulex]
Length = 175
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 83/161 (51%), Positives = 124/161 (77%), Gaps = 2/161 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ++I GD VGKTS+++ +VQN F +YK T+GVDF+ K++ + + +KLQ+WDIA
Sbjct: 16 FKVIIIGDPGVGKTSFIRRYVQNAFRGDYKATIGVDFALKIVRWSE--NQTIKLQLWDIA 73
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + GCIIMFDLT+R SFE+ V+WK D+DSKC+L++GA +PC+LLA+
Sbjct: 74 GQERFTWMTRVYYKEAQGCIIMFDLTSRNSFENAVKWKKDVDSKCVLEDGAPVPCMLLAN 133
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
KCDL R+V+ EIE +C +++F+ W E S+K+ LM+ D M
Sbjct: 134 KCDLRQREVDQWEIETLCREHSFIGWTETSAKDDLMVGDCM 174
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ ++I GD VGKTS+++ +VQN F +YK T+GVDF+ K++ + + +KLQ+WDI
Sbjct: 16 FKVIIIGDPGVGKTSFIRRYVQNAFRGDYKATIGVDFALKIVRWSE--NQTIKLQLWDI 72
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 35/45 (77%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+++IGD VGKTS+++ +VQN F +YK T+GVDF+ K++
Sbjct: 13 EKLFKVIIIGDPGVGKTSFIRRYVQNAFRGDYKATIGVDFALKIV 57
>gi|405965375|gb|EKC30753.1| WD repeat-containing protein 82 [Crassostrea gigas]
Length = 517
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 84/169 (49%), Positives = 128/169 (75%), Gaps = 2/169 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ++I GD TVGKTS+VQ +V + + +YK T+GVDF+ K++ K + +KLQ+WDIA
Sbjct: 311 FKVIIIGDPTVGKTSFVQRYVNDAYRRDYKMTIGVDFALKVV--KWSESQTIKLQLWDIA 368
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+++ CIIMFDLT + +F++ V+WK DLD+KC L +G+ +PCLLLA+
Sbjct: 369 GQERFTSMTRVYYKDAHACIIMFDLTQQSTFQNAVKWKKDLDTKCSLADGSPIPCLLLAN 428
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL R+V+ ++IE +C +++F+ W E S KE LMIE+SM FL + ++
Sbjct: 429 KCDLSHREVQQSDIEDMCKEHDFVGWTETSVKEGLMIEESMRFLCEEMM 477
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ ++I GD TVGKTS+VQ +V + + +YK T+GVDF+ K++ K + +KLQ+WDI
Sbjct: 311 FKVIIIGDPTVGKTSFVQRYVNDAYRRDYKMTIGVDFALKVV--KWSESQTIKLQLWDI 367
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 35/45 (77%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+++IGD TVGKTS+VQ +V + + +YK T+GVDF+ K++
Sbjct: 308 EILFKVIIIGDPTVGKTSFVQRYVNDAYRRDYKMTIGVDFALKVV 352
>gi|443693582|gb|ELT94920.1| hypothetical protein CAPTEDRAFT_101663 [Capitella teleta]
Length = 174
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 122/167 (73%), Gaps = 2/167 (1%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
T+ +L GD VGKTS VQ +V + +YK T+GVDF+ KL+ K +KLQ+WDI
Sbjct: 4 TFKLLTIGDPGVGKTSLVQRYVHGYYTKDYKATLGVDFALKLV--KWSDNVTIKLQLWDI 61
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+++ CIIMFDLT R SF++ ++WK DLDSKC ++G+ +PC+LLA
Sbjct: 62 AGQERFTSMTRVYYRDAHACIIMFDLTQRSSFQNALKWKADLDSKCCQEDGSSVPCILLA 121
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVD 406
+KCDL R+V +EIE+ C + NF+ W EVS KE LM+E+SM +LV+
Sbjct: 122 NKCDLSRREVNQDEIESFCREQNFIGWTEVSVKEGLMVEESMRYLVN 168
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
++ +L GD VGKTS VQ +V + +YK T+GVDF+ KL+ K +KLQ+WDI
Sbjct: 4 TFKLLTIGDPGVGKTSLVQRYVHGYYTKDYKATLGVDFALKLV--KWSDNVTIKLQLWDI 61
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
K+L IGD VGKTS VQ +V + +YK T+GVDF+ KL+
Sbjct: 5 FKLLTIGDPGVGKTSLVQRYVHGYYTKDYKATLGVDFALKLV 46
>gi|193631807|ref|XP_001951808.1| PREDICTED: ras-related protein Rab-7L1-like isoform 1
[Acyrthosiphon pisum]
Length = 201
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 123/169 (72%), Gaps = 2/169 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ++I GD TVGKT++V+ +VQ F YK TVGVDF+ K++ K +KLQ+WDIA
Sbjct: 6 FKVIIIGDPTVGKTAFVKRYVQKSFSREYKGTVGVDFALKII--KVSETETIKLQLWDIA 63
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+++ GC+IMFDL+N+ SF + ++WK D+D+KC +G +PC+LL +
Sbjct: 64 GQERFTWMTRVYYKDAHGCVIMFDLSNKNSFLNTLKWKKDVDAKCTQLDGGPIPCMLLGN 123
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDLP RQ++ +IEA + NF+ W E S+K+ LM+ DSM FL++ ++
Sbjct: 124 KCDLPQRQIDQLDIEAFYKENNFIGWTETSAKDGLMVNDSMQFLINSMM 172
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ ++I GD TVGKT++V+ +VQ F YK TVGVDF+ K++ K +KLQ+WDI
Sbjct: 6 FKVIIIGDPTVGKTAFVKRYVQKSFSREYKGTVGVDFALKII--KVSETETIKLQLWDI 62
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 34/45 (75%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+++IGD TVGKT++V+ +VQ F YK TVGVDF+ K++
Sbjct: 3 EKLFKVIIIGDPTVGKTAFVKRYVQKSFSREYKGTVGVDFALKII 47
>gi|328716362|ref|XP_003245910.1| PREDICTED: ras-related protein Rab-7L1-like isoform 2
[Acyrthosiphon pisum]
Length = 260
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 123/169 (72%), Gaps = 2/169 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ++I GD TVGKT++V+ +VQ F YK TVGVDF+ K++ K +KLQ+WDIA
Sbjct: 65 FKVIIIGDPTVGKTAFVKRYVQKSFSREYKGTVGVDFALKII--KVSETETIKLQLWDIA 122
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+++ GC+IMFDL+N+ SF + ++WK D+D+KC +G +PC+LL +
Sbjct: 123 GQERFTWMTRVYYKDAHGCVIMFDLSNKNSFLNTLKWKKDVDAKCTQLDGGPIPCMLLGN 182
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDLP RQ++ +IEA + NF+ W E S+K+ LM+ DSM FL++ ++
Sbjct: 183 KCDLPQRQIDQLDIEAFYKENNFIGWTETSAKDGLMVNDSMQFLINSMM 231
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ ++I GD TVGKT++V+ +VQ F YK TVGVDF+ K++ K +KLQ+WDI
Sbjct: 65 FKVIIIGDPTVGKTAFVKRYVQKSFSREYKGTVGVDFALKII--KVSETETIKLQLWDI 121
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 34/45 (75%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+++IGD TVGKT++V+ +VQ F YK TVGVDF+ K++
Sbjct: 62 EKLFKVIIIGDPTVGKTAFVKRYVQKSFSREYKGTVGVDFALKII 106
>gi|242013254|ref|XP_002427327.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus
corporis]
gi|212511676|gb|EEB14589.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus
corporis]
Length = 202
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/166 (51%), Positives = 120/166 (72%), Gaps = 2/166 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ++I GD TVGKTS+VQ +V+N + +YK TVGVDF+ K+L K + +KLQ+WDIA
Sbjct: 19 FKVIIIGDPTVGKTSFVQRYVENTYKRDYKGTVGVDFALKIL--KWSDTQTIKLQLWDIA 76
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+++ GC+IMFDLTN+ SF + ++WK D+DSKC L +G +PC+LLA+
Sbjct: 77 GQERFTWMTRVYYKDAHGCVIMFDLTNKNSFVNTLKWKRDVDSKCSLPDGRPIPCMLLAN 136
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVD 406
KCDL R VE EIE + NF W E S+KE M+ DSMN + +
Sbjct: 137 KCDLSRRSVEQVEIEEFHKENNFCGWTETSAKEGDMVNDSMNAITN 182
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ ++I GD TVGKTS+VQ +V+N + +YK TVGVDF+ K+L K + +KLQ+WDI
Sbjct: 19 FKVIIIGDPTVGKTSFVQRYVENTYKRDYKGTVGVDFALKIL--KWSDTQTIKLQLWDI 75
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 36/45 (80%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+++IGD TVGKTS+VQ +V+N + +YK TVGVDF+ K+L
Sbjct: 16 EKLFKVIIIGDPTVGKTSFVQRYVENTYKRDYKGTVGVDFALKIL 60
>gi|166157852|ref|NP_001107338.1| uncharacterized protein LOC100135159 [Xenopus (Silurana)
tropicalis]
gi|163916398|gb|AAI57147.1| LOC100135159 protein [Xenopus (Silurana) tropicalis]
Length = 204
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 117/172 (68%), Gaps = 2/172 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDSTVGKTS +Q +V + F +YK T+GVDF+ K++ V+LQ+WDIA
Sbjct: 8 FKVLVVGDSTVGKTSLLQRYVHDVFGKDYKMTMGVDFALKVVQWSD--TETVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+ + C+IMFDLTN +SF + WK DLD+K IL NG +PC+LLA+
Sbjct: 66 GQERFASMTRLYYKQASACVIMFDLTNSESFRNCQMWKDDLDNKVILPNGDFVPCILLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCDL V +I+ + NF+ W E S KE++ I +SM L++R++ S+
Sbjct: 126 KCDLSPWAVSRQQIDQFSKENNFIGWTETSVKENININESMRVLIERMMASR 177
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GDSTVGKTS +Q +V + F +YK T+GVDF+ K++ V+LQ+WDI
Sbjct: 8 FKVLVVGDSTVGKTSLLQRYVHDVFGKDYKMTMGVDFALKVVQWSD--TETVRLQLWDI 64
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 36/48 (75%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
S + + K+LV+GDSTVGKTS +Q +V + F +YK T+GVDF+ K++
Sbjct: 2 SSFDHLFKVLVVGDSTVGKTSLLQRYVHDVFGKDYKMTMGVDFALKVV 49
>gi|148233848|ref|NP_001085684.1| MGC80435 protein [Xenopus laevis]
gi|49118197|gb|AAH73193.1| MGC80435 protein [Xenopus laevis]
Length = 204
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 116/173 (67%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDSTVGKTS +Q +V + F +YK T+GVDF+ K++ V+LQ+WDIA
Sbjct: 8 FKVLVVGDSTVGKTSLLQRYVHDVFGKDYKMTMGVDFALKVVQWSD--AETVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+ + C+IMFDLTN +SF + WK DLD+K L NG +PC+LLA+
Sbjct: 66 GQERFASMTRLYYKQASACVIMFDLTNAESFRNCQMWKDDLDNKVTLPNGDFVPCILLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V +I+ + NF+ W E S KE++ I +SM L+ R++ SK+
Sbjct: 126 KCDLSPWAVSREQIDQFSKENNFIGWTETSVKENININESMRVLIGRMMASKQ 178
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GDSTVGKTS +Q +V + F +YK T+GVDF+ K++ V+LQ+WDI
Sbjct: 8 FKVLVVGDSTVGKTSLLQRYVHDVFGKDYKMTMGVDFALKVVQWSD--AETVRLQLWDI 64
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 36/48 (75%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
S + + K+LV+GDSTVGKTS +Q +V + F +YK T+GVDF+ K++
Sbjct: 2 SSFDHLFKVLVVGDSTVGKTSLLQRYVHDVFGKDYKMTMGVDFALKVV 49
>gi|291402521|ref|XP_002717602.1| PREDICTED: RAB7, member RAS oncogene family-like 1 isoform 1
[Oryctolagus cuniculus]
Length = 204
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 119/179 (66%), Gaps = 4/179 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEVVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL V ++I+ + F W E S KE+ I ++M L+++++ + + EEAV
Sbjct: 126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMSNSK--EEAV 182
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEVVRLQLWDI 64
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVL 49
>gi|320167316|gb|EFW44215.1| small GTPase rabE [Capsaspora owczarzaki ATCC 30864]
Length = 265
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 115/169 (68%), Gaps = 2/169 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ++I G+ T GKT+ ++ +V N + YK+T+GVDF+ K++ K V+LQ+WDIA
Sbjct: 46 FKVIIIGEGTTGKTALIRRYVDNTWDRTYKSTLGVDFALKVIDISKQ--EHVRLQLWDIA 103
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+++ +++FDLT R SF+ V WK D+DSK L N ++PC+L+A+
Sbjct: 104 GQERFQHMTRVYYRSAAAAVVVFDLTQRWSFQKVRGWKADVDSKVRLPNNEVIPCMLIAN 163
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDLPDRQV EI+ + F+ W E S+KE++ IE ++ LV I+
Sbjct: 164 KCDLPDRQVSREEIDEFAREMGFLCWFETSAKENINIEKAIKTLVSHIL 212
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ ++I G+ T GKT+ ++ +V N + YK+T+GVDF+ K++ K V+LQ+WDI
Sbjct: 46 FKVIIIGEGTTGKTALIRRYVDNTWDRTYKSTLGVDFALKVIDISKQ--EHVRLQLWDI 102
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 154
E V K+++IG+ T GKT+ ++ +V N + YK+T+GVDF+ K++ K
Sbjct: 43 EHVFKVIIIGEGTTGKTALIRRYVDNTWDRTYKSTLGVDFALKVIDISK 91
>gi|386781459|ref|NP_001247882.1| ras-related protein Rab-7L1 [Macaca mulatta]
gi|402857442|ref|XP_003893264.1| PREDICTED: ras-related protein Rab-7L1 [Papio anubis]
gi|402857444|ref|XP_003893265.1| PREDICTED: ras-related protein Rab-7L1 [Papio anubis]
gi|355558842|gb|EHH15622.1| hypothetical protein EGK_01737 [Macaca mulatta]
gi|355745985|gb|EHH50610.1| hypothetical protein EGM_01467 [Macaca fascicularis]
gi|380786041|gb|AFE64896.1| ras-related protein Rab-7L1 isoform 1 [Macaca mulatta]
gi|383411345|gb|AFH28886.1| ras-related protein Rab-7L1 isoform 1 [Macaca mulatta]
Length = 203
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 116/173 (67%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEIVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG ++PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGELVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V ++I+ + F W E S KE+ I ++M L+++++ + R
Sbjct: 126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSR 178
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEIVRLQLWDI 64
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVL 49
>gi|156403879|ref|XP_001640135.1| predicted protein [Nematostella vectensis]
gi|156227268|gb|EDO48072.1| predicted protein [Nematostella vectensis]
Length = 165
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 112/161 (69%), Gaps = 2/161 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GD+TVGKTS+VQ +V YK T+GVDF+ K++ + V+LQ+WDIA
Sbjct: 6 FKVLIVGDATVGKTSFVQRYVHGNTRREYKPTIGVDFALKVIPWAQDA--TVRLQLWDIA 63
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + C+IMFDLT++++F S ++WK+DLDSKC L NG +PC+L+ +
Sbjct: 64 GQERFTSMTRVYYKGAAACVIMFDLTSQQTFNSTIKWKNDLDSKCKLPNGKPIPCILVGN 123
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL R V I+ +C ++F+ W E+S KE + + ++M
Sbjct: 124 KSDLSARPVPKETIDKLCRDHSFLGWTEMSVKEEVNVSETM 164
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +LI GD+TVGKTS+VQ +V YK T+GVDF+ K++ + V+LQ+WDI
Sbjct: 6 FKVLIVGDATVGKTSFVQRYVHGNTRREYKPTIGVDFALKVIPWAQ--DATVRLQLWDI 62
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 34/46 (73%)
Query: 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+E + K+L++GD+TVGKTS+VQ +V YK T+GVDF+ K++
Sbjct: 2 SEILFKVLIVGDATVGKTSFVQRYVHGNTRREYKPTIGVDFALKVI 47
>gi|4506375|ref|NP_003920.1| ras-related protein Rab-7L1 isoform 1 [Homo sapiens]
gi|197101399|ref|NP_001126387.1| ras-related protein Rab-7L1 [Pongo abelii]
gi|208609962|ref|NP_001129134.1| ras-related protein Rab-7L1 isoform 1 [Homo sapiens]
gi|114572136|ref|XP_001162514.1| PREDICTED: uncharacterized protein LOC469654 isoform 4 [Pan
troglodytes]
gi|332248154|ref|XP_003273227.1| PREDICTED: ras-related protein Rab-7L1 isoform 1 [Nomascus
leucogenys]
gi|332248156|ref|XP_003273228.1| PREDICTED: ras-related protein Rab-7L1 isoform 2 [Nomascus
leucogenys]
gi|332811507|ref|XP_001162387.2| PREDICTED: uncharacterized protein LOC469654 isoform 1 [Pan
troglodytes]
gi|397504834|ref|XP_003822985.1| PREDICTED: ras-related protein Rab-7L1 [Pan paniscus]
gi|397504836|ref|XP_003822986.1| PREDICTED: ras-related protein Rab-7L1 [Pan paniscus]
gi|13633364|sp|O14966.1|RAB7L_HUMAN RecName: Full=Ras-related protein Rab-7L1; AltName: Full=Rab-7-like
protein 1
gi|75054849|sp|Q5R7A4.1|RAB7L_PONAB RecName: Full=Ras-related protein Rab-7L1; AltName: Full=Rab-7-like
protein 1
gi|2388544|dbj|BAA22160.1| small GTP-binding protein [Homo sapiens]
gi|12803517|gb|AAH02585.1| RAB7, member RAS oncogene family-like 1 [Homo sapiens]
gi|49456973|emb|CAG46807.1| RAB7L1 [Homo sapiens]
gi|54695950|gb|AAV38347.1| RAB7, member RAS oncogene family-like 1 [Homo sapiens]
gi|55731284|emb|CAH92356.1| hypothetical protein [Pongo abelii]
gi|61357258|gb|AAX41360.1| RAB7 member RAS oncogene family-like 1 [synthetic construct]
gi|119611986|gb|EAW91580.1| RAB7, member RAS oncogene family-like 1, isoform CRA_a [Homo
sapiens]
gi|119611987|gb|EAW91581.1| RAB7, member RAS oncogene family-like 1, isoform CRA_a [Homo
sapiens]
gi|123982028|gb|ABM82843.1| RAB7, member RAS oncogene family-like 1 [synthetic construct]
gi|124000657|gb|ABM87837.1| RAB7, member RAS oncogene family-like 1 [synthetic construct]
gi|157928318|gb|ABW03455.1| RAB7, member RAS oncogene family-like 1 [synthetic construct]
gi|261859934|dbj|BAI46489.1| RAB7, member RAS oncogene family-like 1 [synthetic construct]
gi|410211350|gb|JAA02894.1| RAB7, member RAS oncogene family-like 1 [Pan troglodytes]
gi|410211352|gb|JAA02895.1| RAB7, member RAS oncogene family-like 1 [Pan troglodytes]
gi|410211354|gb|JAA02896.1| RAB7, member RAS oncogene family-like 1 [Pan troglodytes]
gi|410211356|gb|JAA02897.1| RAB7, member RAS oncogene family-like 1 [Pan troglodytes]
gi|410211358|gb|JAA02898.1| RAB7, member RAS oncogene family-like 1 [Pan troglodytes]
gi|410211360|gb|JAA02899.1| RAB7, member RAS oncogene family-like 1 [Pan troglodytes]
gi|410211362|gb|JAA02900.1| RAB7, member RAS oncogene family-like 1 [Pan troglodytes]
gi|410256832|gb|JAA16383.1| RAB7, member RAS oncogene family-like 1 [Pan troglodytes]
gi|410256834|gb|JAA16384.1| RAB7, member RAS oncogene family-like 1 [Pan troglodytes]
gi|410256836|gb|JAA16385.1| RAB7, member RAS oncogene family-like 1 [Pan troglodytes]
gi|410256838|gb|JAA16386.1| RAB7, member RAS oncogene family-like 1 [Pan troglodytes]
gi|410287094|gb|JAA22147.1| RAB7, member RAS oncogene family-like 1 [Pan troglodytes]
gi|410287096|gb|JAA22148.1| RAB7, member RAS oncogene family-like 1 [Pan troglodytes]
gi|410287098|gb|JAA22149.1| RAB7, member RAS oncogene family-like 1 [Pan troglodytes]
gi|410287100|gb|JAA22150.1| RAB7, member RAS oncogene family-like 1 [Pan troglodytes]
gi|410287102|gb|JAA22151.1| RAB7, member RAS oncogene family-like 1 [Pan troglodytes]
gi|410329207|gb|JAA33550.1| RAB7, member RAS oncogene family-like 1 [Pan troglodytes]
gi|410329209|gb|JAA33551.1| RAB7, member RAS oncogene family-like 1 [Pan troglodytes]
gi|410329211|gb|JAA33552.1| RAB7, member RAS oncogene family-like 1 [Pan troglodytes]
Length = 203
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 114/169 (67%), Gaps = 2/169 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L Y V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDY--EIVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL V ++I+ + F W E S KE+ I ++M L+++++
Sbjct: 126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMM 174
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L Y V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDY--EIVRLQLWDI 64
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L Y
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDY 54
>gi|55731507|emb|CAH92465.1| hypothetical protein [Pongo abelii]
Length = 203
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 114/169 (67%), Gaps = 2/169 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L Y V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDY--EIVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL V ++I+ + F W E S KE+ I ++M L+++++
Sbjct: 126 KCDLSPWAVNRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMM 174
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L Y V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDY--EIVRLQLWDI 64
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L Y
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDY 54
>gi|60834171|gb|AAX37082.1| RAB7 member RAS oncogene family-like 1 [synthetic construct]
Length = 204
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 114/169 (67%), Gaps = 2/169 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L Y V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDY--EIVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL V ++I+ + F W E S KE+ I ++M L+++++
Sbjct: 126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMM 174
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L Y V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDY--EIVRLQLWDI 64
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L Y
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDY 54
>gi|74005894|ref|XP_536104.2| PREDICTED: ras-related protein Rab-7L1 isoform 1 [Canis lupus
familiaris]
Length = 203
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFQQHYKSTVGVDFALKVLQWSD--SEMVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ CIIMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACIIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V ++++ + F W E S KE+ I ++M L+++++ + R
Sbjct: 126 KCDLSPWAVSRDQVDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMSNSR 178
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFQQHYKSTVGVDFALKVLQWSD--SEMVRLQLWDI 64
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFQQHYKSTVGVDFALKVL 49
>gi|440893578|gb|ELR46289.1| Ras-related protein Rab-7L1, partial [Bos grunniens mutus]
Length = 209
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 14 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWS--DSEMVRLQLWDIA 71
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 72 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQKWKQDLDSKLTLPNGEPVPCLLLAN 131
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V ++++ + F W E S KE+ I ++M L+++++ + R
Sbjct: 132 KCDLSPWAVSRDQVDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMSNSR 184
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 14 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWS--DSEMVRLQLWDI 70
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 36/48 (75%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
S + + K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 8 SSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVL 55
>gi|444706397|gb|ELW47739.1| Ras-related protein Rab-7L1 [Tupaia chinensis]
Length = 204
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWS--DSEMVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V ++I+ + F W E S KE+ I ++M L+++++ + R
Sbjct: 126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMSNSR 178
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWS--DSEMVRLQLWDI 64
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 36/48 (75%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
S + + K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 2 SSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVL 49
>gi|189066586|dbj|BAG35836.1| unnamed protein product [Homo sapiens]
Length = 203
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 114/169 (67%), Gaps = 2/169 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L Y V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSRHYKSTVGVDFALKVLQWSDY--EIVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL V ++I+ + F W E S KE+ I ++M L+++++
Sbjct: 126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMM 174
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L Y V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSRHYKSTVGVDFALKVLQWSDY--EIVRLQLWDI 64
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L Y
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSRHYKSTVGVDFALKVLQWSDY 54
>gi|355714977|gb|AES05183.1| RAB7, member RAS oncoprotein family-like 1 [Mustela putorius furo]
Length = 202
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V ++++ + F W E S KE+ I ++M L+++++ + R
Sbjct: 126 KCDLSPWAVSRDQVDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMSNSR 178
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDI 64
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVL 49
>gi|335295264|ref|XP_003357447.1| PREDICTED: ras-related protein Rab-7L1-like isoform 1 [Sus scrofa]
gi|335295266|ref|XP_003357448.1| PREDICTED: ras-related protein Rab-7L1-like isoform 2 [Sus scrofa]
gi|335295268|ref|XP_003357449.1| PREDICTED: ras-related protein Rab-7L1-like isoform 3 [Sus scrofa]
Length = 203
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 116/175 (66%), Gaps = 2/175 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEVVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGGPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCDL V ++++ + F W E S KE+ I ++M L+++++ + + E
Sbjct: 126 KCDLSPWAVSRDQVDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMSNSKEE 180
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEVVRLQLWDI 64
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 36/48 (75%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
S + + K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 2 SSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVL 49
>gi|149707806|ref|XP_001490786.1| PREDICTED: ras-related protein Rab-7L1-like isoform 1 [Equus
caballus]
Length = 203
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V ++++ + F W E S KE+ I ++M L+++++ + R
Sbjct: 126 KCDLSPWAVSRDQVDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMSNSR 178
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDI 64
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVL 49
>gi|395838749|ref|XP_003792270.1| PREDICTED: ras-related protein Rab-7L1 [Otolemur garnettii]
Length = 204
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWS--DSEMVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYKDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V ++I+ + F W E S KE+ I ++M L+++++ + R
Sbjct: 126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMSNTR 178
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWS--DSEMVRLQLWDI 64
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 36/48 (75%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
S + + K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 2 SSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVL 49
>gi|149944729|ref|NP_001092564.1| ras-related protein Rab-7L1 [Bos taurus]
gi|426239399|ref|XP_004013609.1| PREDICTED: ras-related protein Rab-7L1 isoform 1 [Ovis aries]
gi|148745251|gb|AAI42253.1| RAB7L1 protein [Bos taurus]
gi|296479392|tpg|DAA21507.1| TPA: RAB7, member RAS oncogene family-like 1 [Bos taurus]
Length = 203
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWS--DSEMVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQKWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V ++++ + F W E S KE+ I ++M L+++++ + R
Sbjct: 126 KCDLSPWAVSRDQVDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMSNSR 178
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWS--DSEMVRLQLWDI 64
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 36/48 (75%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
S + + K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 2 SSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVL 49
>gi|118102410|ref|XP_417967.2| PREDICTED: ras-related protein Rab-7L1 [Gallus gallus]
Length = 205
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 115/171 (67%), Gaps = 2/171 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+TVGKTS VQ + + F +YK+TVGVDF+ K++ + V+LQ+WDIA
Sbjct: 8 FKVLVVGDATVGKTSLVQRYANDSFNRHYKSTVGVDFALKVVQWSE--SETVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+ + C+IMFD+TN +F + +WK DLDSK L +G+ +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYREASACVIMFDVTNVSTFSNSQKWKQDLDSKLTLPDGSPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
KCDL V E++ + F W+E S KE+ I +SM L+++++ S
Sbjct: 126 KCDLSPWAVTREEVDRFSKENGFSGWVETSVKENKNINESMRVLIEKMMSS 176
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+TVGKTS VQ + + F +YK+TVGVDF+ K++ + V+LQ+WDI
Sbjct: 8 FKVLVVGDATVGKTSLVQRYANDSFNRHYKSTVGVDFALKVVQWSE--SETVRLQLWDI 64
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD+TVGKTS VQ + + F +YK+TVGVDF+ K++
Sbjct: 7 MFKVLVVGDATVGKTSLVQRYANDSFNRHYKSTVGVDFALKVV 49
>gi|62898760|dbj|BAD97234.1| RAB7, member RAS oncogene family-like 1 variant [Homo sapiens]
Length = 203
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 114/169 (67%), Gaps = 2/169 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L Y V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSPVQRYSQDSFSKHYKSTVGVDFALKVLQWSDY--EIVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL V ++I+ + F W E S KE+ I ++M L+++++
Sbjct: 126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMM 174
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L Y V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSPVQRYSQDSFSKHYKSTVGVDFALKVLQWSDY--EIVRLQLWDI 64
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L Y
Sbjct: 7 LFKVLVVGDAAVGKTSPVQRYSQDSFSKHYKSTVGVDFALKVLQWSDY 54
>gi|431892885|gb|ELK03313.1| Ras-related protein Rab-7L1 [Pteropus alecto]
Length = 203
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 116/173 (67%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWS--DSEMVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V ++++ + F+ W E S KE+ I ++M L+++++ + R
Sbjct: 126 KCDLSPWAVSRDQVDRFSKENGFIGWTETSVKENKNINEAMRVLIEKMMNNSR 178
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWS--DSEMVRLQLWDI 64
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 36/48 (75%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
S + + K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 2 SSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVL 49
>gi|403294870|ref|XP_003938385.1| PREDICTED: ras-related protein Rab-7L1 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 203
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 120/182 (65%), Gaps = 2/182 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYCQDSFSKHYKSTVGVDFALKVLQWSD--SEIVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
KCDL V ++I+ + F W E S KE+ I ++M+ L+++++ + R + ++
Sbjct: 126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMSVLIEKMMRNSREDTLSLS 185
Query: 421 RK 422
K
Sbjct: 186 TK 187
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYCQDSFSKHYKSTVGVDFALKVLQWSD--SEIVRLQLWDI 64
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYCQDSFSKHYKSTVGVDFALKVL 49
>gi|417397029|gb|JAA45548.1| Putative gtp-binding protein-like ras superfamily [Desmodus
rotundus]
Length = 203
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 116/173 (67%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQKWKQDLDSKLTLPNGKPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V ++++ + F+ W E S KE+ I ++M L+++++ + R
Sbjct: 126 KCDLSPWAVSRDQVDRFSKENGFIGWTETSVKENKNINEAMRVLIEKMMSNFR 178
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDI 64
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVL 49
>gi|296230574|ref|XP_002760764.1| PREDICTED: ras-related protein Rab-7L1 isoform 1 [Callithrix
jacchus]
Length = 203
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 116/173 (67%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEIVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V ++I+ + F W E S KE+ I ++M+ L+++++ + R
Sbjct: 126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMSVLIEKMMRNSR 178
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEIVRLQLWDI 64
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVL 49
>gi|410986335|ref|XP_003999466.1| PREDICTED: ras-related protein Rab-7L1 isoform 1 [Felis catus]
Length = 203
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFNKHYKSTVGVDFALKVLQWSD--SEVVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFTNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V ++++ + F W E S KE+ I ++M L+++++ + R
Sbjct: 126 KCDLSPWAVSRDQVDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMSNSR 178
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFNKHYKSTVGVDFALKVLQWSD--SEVVRLQLWDI 64
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFNKHYKSTVGVDFALKVL 49
>gi|301786128|ref|XP_002928478.1| PREDICTED: ras-related protein Rab-7L1-like isoform 1 [Ailuropoda
melanoleuca]
gi|281339455|gb|EFB15039.1| hypothetical protein PANDA_018438 [Ailuropoda melanoleuca]
Length = 203
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNAMTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V ++++ + F W E S KE+ I ++M L+++++ + R
Sbjct: 126 KCDLSPWAVSRDQVDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMSNSR 178
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDI 64
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVL 49
>gi|432116090|gb|ELK37217.1| Ras-related protein Rab-7L1 [Myotis davidii]
Length = 203
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V ++++ + F W E S KE+ + ++M LV++++ + +
Sbjct: 126 KCDLSPWAVSRDQVDRFSKENGFTGWTETSVKENKNVNEAMRVLVEKMMSNSK 178
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDI 64
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVL 49
>gi|54696028|gb|AAV38386.1| RAB7, member RAS oncogene family-like 1 [synthetic construct]
gi|61367282|gb|AAX42976.1| RAB7 member RAS oncogene family-like 1 [synthetic construct]
Length = 204
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 113/169 (66%), Gaps = 2/169 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVG DF+ K+L Y V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGGDFALKVLQWSDY--EIVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL V ++I+ + F W E S KE+ I ++M L+++++
Sbjct: 126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMM 174
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVG DF+ K+L Y V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGGDFALKVLQWSDY--EIVRLQLWDI 64
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVG DF+ K+L Y
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGGDFALKVLQWSDY 54
>gi|344277036|ref|XP_003410311.1| PREDICTED: ras-related protein Rab-7L1-like isoform 1 [Loxodonta
africana]
Length = 204
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L +G +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V ++I+ + F W E S KE+ I ++M L+++++ + R
Sbjct: 126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMNNSR 178
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDI 64
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVL 49
>gi|351710940|gb|EHB13859.1| Ras-related protein Rab-7L1 [Heterocephalus glaber]
Length = 204
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L +G +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V ++I+ + F W E S KE+ I ++M LV++++ + R
Sbjct: 126 KCDLSPWAVSRDQIDRFSKENGFAGWTETSVKENKNINEAMRVLVEKMMSNCR 178
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDI 64
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVL 49
>gi|348578125|ref|XP_003474834.1| PREDICTED: ras-related protein Rab-7L1-like isoform 1 [Cavia
porcellus]
Length = 204
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS V+ + Q+ F +YK+TVGVDF+ K++ V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVRRYSQDCFSKHYKSTVGVDFALKVIQWSD--SEMVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V ++I+ + F W E S KE+ I ++M LV++++ + R
Sbjct: 126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLVEKMMSNSR 178
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS V+ + Q+ F +YK+TVGVDF+ K++ V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVRRYSQDCFSKHYKSTVGVDFALKVIQWSD--SEMVRLQLWDI 64
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD+ VGKTS V+ + Q+ F +YK+TVGVDF+ K++
Sbjct: 7 LFKVLVVGDAAVGKTSLVRRYSQDCFSKHYKSTVGVDFALKVI 49
>gi|260809841|ref|XP_002599713.1| hypothetical protein BRAFLDRAFT_287780 [Branchiostoma floridae]
gi|229284994|gb|EEN55725.1| hypothetical protein BRAFLDRAFT_287780 [Branchiostoma floridae]
Length = 168
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 115/164 (70%), Gaps = 5/164 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI GD+TVGKTS+VQ +V + F YK TVGVDF+ K++ + V+ Q+WD+A
Sbjct: 6 FKILIIGDATVGKTSFVQRYVNDSFKREYKATVGVDFALKVIQISEED--TVRFQLWDVA 63
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+++ C+I+FD+T +++F + ++WK DLDSK L +G +PC+LLA+
Sbjct: 64 GQERFTSMTRVYYKDASACVIIFDVTAKQTFHNCIKWKKDLDSKVSLPDGRCVPCMLLAN 123
Query: 361 KC---DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL ++ V E+ C ++NF+ W E+S K+++ +++SM
Sbjct: 124 KASAIDLQEKAVTEEEVNEFCKEHNFIGWTEISVKDNVNVKESM 167
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ ILI GD+TVGKTS+VQ +V + F YK TVGVDF+ K++ + V+ Q+WD+
Sbjct: 6 FKILIIGDATVGKTSFVQRYVNDSFKREYKATVGVDFALKVIQISEED--TVRFQLWDV 62
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 35/45 (77%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KIL+IGD+TVGKTS+VQ +V + F YK TVGVDF+ K++
Sbjct: 3 ERLFKILIIGDATVGKTSFVQRYVNDSFKREYKATVGVDFALKVI 47
>gi|348517128|ref|XP_003446087.1| PREDICTED: ras-related protein Rab-7L1-like [Oreochromis niloticus]
Length = 207
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 112/167 (67%), Gaps = 2/167 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
ILI GD VGK+S+V +V +F YK TVGVDFS KLL + V+LQ+WDIAGQ
Sbjct: 8 ILIVGDGNVGKSSFVHRYVSGQFNKTYKMTVGVDFSVKLL--RWSDKEKVRLQLWDIAGQ 65
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+I M+R+YY+ + GC++MFD+T+ SF S WK DLD+K +L NG +PC+L+A+KC
Sbjct: 66 ERFISMTRIYYKGALGCVVMFDVTSSSSFSSCRHWKQDLDNKAMLPNGDSIPCILVANKC 125
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
DL R V + I+ + F++W+E S K++ +E++M L I+
Sbjct: 126 DLAHRAVSADTIDKFSKAHGFITWMETSVKDNKNVEEAMRMLAQEIL 172
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
ILI GD VGK+S+V +V +F YK TVGVDFS KLL + V+LQ+WDI
Sbjct: 8 ILIVGDGNVGKSSFVHRYVSGQFNKTYKMTVGVDFSVKLL--RWSDKEKVRLQLWDI 62
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E +LKIL++GD VGK+S+V +V +F YK TVGVDFS KLL
Sbjct: 3 EHLLKILIVGDGNVGKSSFVHRYVSGQFNKTYKMTVGVDFSVKLL 47
>gi|397480709|ref|XP_003811617.1| PREDICTED: uncharacterized protein LOC100988764 [Pan paniscus]
Length = 561
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 133/200 (66%), Gaps = 11/200 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 362 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 418
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +FE+V++WK DLDSK L NG+ +P +LLA
Sbjct: 419 AGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLA 478
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM---E 415
+KCD D ++++ C ++ F W E S+K+++ IE++ FLV++I+ + + E
Sbjct: 479 NKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILVNHQSFPNE 538
Query: 416 EEAVERKSSIRLSEETLRDD 435
E V++ I+L +ETLR +
Sbjct: 539 ENDVDK---IKLDQETLRAE 555
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 355 PETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 404
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 362 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 418
>gi|19424290|ref|NP_598274.1| ras-related protein Rab-7L1 [Rattus norvegicus]
gi|81910561|sp|Q63481.1|RAB7L_RAT RecName: Full=Ras-related protein Rab-7L1; AltName: Full=Rab-7-like
protein 1; AltName: Full=Ras-related protein Rab-29
gi|1235593|emb|CAA65444.1| GTPase [Rattus norvegicus]
gi|149058655|gb|EDM09812.1| RAB7, member RAS oncogene family-like 1, isoform CRA_a [Rattus
norvegicus]
gi|149058656|gb|EDM09813.1| RAB7, member RAS oncogene family-like 1, isoform CRA_a [Rattus
norvegicus]
Length = 204
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 114/173 (65%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L +G +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K DL V ++I+ + F W E S KE+ I ++M LV++++ + R
Sbjct: 126 KSDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLVEKMMNNSR 178
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDI 64
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVL 49
>gi|229608951|ref|NP_659124.2| ras-related protein Rab-7L1 [Mus musculus]
Length = 204
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 114/173 (65%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L +G +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K DL V ++I+ + F W E S KE+ I ++M LV++++ + R
Sbjct: 126 KSDLSPWAVSRDQIDQFSKENGFTGWTETSVKENKNINEAMRVLVEKMMNNSR 178
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDI 64
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVL 49
>gi|354478103|ref|XP_003501255.1| PREDICTED: ras-related protein Rab-7L1-like [Cricetulus griseus]
Length = 204
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L +G +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGDPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K DL V ++I+ + F+ W E S KE+ I ++M LV++++ + R
Sbjct: 126 KSDLSPWAVSRDQIDRFSKENGFIGWTETSVKENRNINEAMRVLVEKMMNNSR 178
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDI 64
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVL 49
>gi|51316505|sp|Q91YQ1.1|RAB7L_MOUSE RecName: Full=Ras-related protein Rab-7L1; AltName: Full=Rab-7-like
protein 1
gi|16359355|gb|AAH16133.1| RAB7, member RAS oncogene family-like 1 [Mus musculus]
gi|20809768|gb|AAH29056.1| RAB7, member RAS oncogene family-like 1 [Mus musculus]
gi|112293019|dbj|BAF02887.1| Rab29 [Mus musculus]
gi|148707749|gb|EDL39696.1| RAB7, member RAS oncogene family-like 1, isoform CRA_a [Mus
musculus]
Length = 204
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 114/173 (65%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L +G +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K DL V ++I+ + F W E S KE+ I ++M LV++++ + R
Sbjct: 126 KSDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLVEKMMNNSR 178
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDI 64
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVL 49
>gi|432959688|ref|XP_004086364.1| PREDICTED: ras-related protein Rab-7L1-like [Oryzias latipes]
Length = 204
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 108/167 (64%), Gaps = 2/167 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
ILI GD VGK+S+V ++ F YK TVGVDF+ KLL V+LQ+WDIAGQ
Sbjct: 8 ILIVGDGNVGKSSFVNRYISGNFNRTYKMTVGVDFAVKLLHWSDE--EKVRLQLWDIAGQ 65
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+I M+R+YY+ + GCI+MFD+++ SF S WK DLD K +L NG +PCLLLA+KC
Sbjct: 66 ERFISMTRIYYKGAVGCIVMFDISSSSSFLSCRLWKQDLDHKAMLPNGDTIPCLLLANKC 125
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
DL +R V + I+ F +W+E S KE+ + ++M LV I+
Sbjct: 126 DLAERAVSADTIDQFSGANGFFTWMEASVKENKNVGEAMRRLVQEIL 172
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
ILI GD VGK+S+V ++ F YK TVGVDF+ KLL V+LQ+WDI
Sbjct: 8 ILIVGDGNVGKSSFVNRYISGNFNRTYKMTVGVDFAVKLLHWSDE--EKVRLQLWDI 62
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E +LKIL++GD VGK+S+V ++ F YK TVGVDF+ KLL
Sbjct: 3 EHLLKILIVGDGNVGKSSFVNRYISGNFNRTYKMTVGVDFAVKLL 47
>gi|327278637|ref|XP_003224067.1| PREDICTED: ras-related protein Rab-7L1-like isoform 1 [Anolis
carolinensis]
Length = 202
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 111/169 (65%), Gaps = 2/169 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GD+TVGKTS VQ + + F +YK+TVGVDF+ K++ V+LQ+WDIA
Sbjct: 2 FKVLIIGDATVGKTSLVQRYANDSFNKHYKSTVGVDFALKVVQWSD--SETVRLQLWDIA 59
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+ + C+IMFD+T+ +F S +WK DLDSK L +G +PCLLLA+
Sbjct: 60 GQERFTSMTRLYYKEASACVIMFDVTSVSTFTSCQKWKQDLDSKLRLPDGNPVPCLLLAN 119
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL V EI+ + F W E S KE+ I +SM L+++++
Sbjct: 120 KCDLYPWSVTREEIDRFSKENGFTGWTETSVKENKNINESMRVLIEKMM 168
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +LI GD+TVGKTS VQ + + F +YK+TVGVDF+ K++ V+LQ+WDI
Sbjct: 2 FKVLIIGDATVGKTSLVQRYANDSFNKHYKSTVGVDFALKVVQWSD--SETVRLQLWDI 58
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGD+TVGKTS VQ + + F +YK+TVGVDF+ K++
Sbjct: 1 MFKVLIIGDATVGKTSLVQRYANDSFNKHYKSTVGVDFALKVV 43
>gi|449280941|gb|EMC88156.1| Ras-related protein Rab-7L1, partial [Columba livia]
Length = 169
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 115/171 (67%), Gaps = 12/171 (7%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+TVGKTS VQ + + F +YK+TVGVDF+ K++ + V+LQ+WDIA
Sbjct: 8 FKVLVVGDATVGKTSLVQRYANDSFNRHYKSTVGVDFALKVVQWSE--SETVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK +L +G+ +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNVSTFSNSQKWKQDLDSKLVLPDGSPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
KCDL V +E+ W+E S KE+ I +SM L+++++ S
Sbjct: 126 KCDLSPWAVTRDEV----------GWVETSVKENKNINESMRVLIEKMMSS 166
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+TVGKTS VQ + + F +YK+TVGVDF+ K++ + V+LQ+WDI
Sbjct: 8 FKVLVVGDATVGKTSLVQRYANDSFNRHYKSTVGVDFALKVVQWSE--SETVRLQLWDI 64
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 35/45 (77%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ + K+LV+GD+TVGKTS VQ + + F +YK+TVGVDF+ K++
Sbjct: 5 DRMFKVLVVGDATVGKTSLVQRYANDSFNRHYKSTVGVDFALKVV 49
>gi|340726280|ref|XP_003401488.1| PREDICTED: hypothetical protein LOC100644037 [Bombus terrestris]
Length = 678
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 120/177 (67%), Gaps = 6/177 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+ + ++LQ+WDIA
Sbjct: 475 YKILVIGELGAGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDPHT--IIRLQLWDIA 532
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T + ++VV+WK DLDSK L +G+ +PC+LLA+
Sbjct: 533 GQERFGNMTRVYYKEAVGAFIVFDVTRSATLDAVVKWKQDLDSKVQLPDGSQIPCVLLAN 592
Query: 361 KCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD ++ +N +++ C + NF W E S+KE++ IE++ FLV++I+ + +M
Sbjct: 593 KCDQ-QKEGLVNSPAKMDEYCKEKNFAGWFETSAKENINIEEAARFLVNKILQNDQM 648
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+ + ++LQ+WDI
Sbjct: 475 YKILVIGELGAGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDPHT--IIRLQLWDI 531
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILVIG+ GKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 472 EHLYKILVIGELGAGKTSIIKRYVHQFFSQHYRATIGVDFALKVLN 517
>gi|332825172|ref|XP_001161467.2| PREDICTED: ras-related protein Rab-32 [Pan troglodytes]
gi|410212486|gb|JAA03462.1| RAB32, member RAS oncogene family [Pan troglodytes]
gi|410251312|gb|JAA13623.1| RAB32, member RAS oncogene family [Pan troglodytes]
gi|410295694|gb|JAA26447.1| RAB32, member RAS oncogene family [Pan troglodytes]
gi|410331643|gb|JAA34768.1| RAB32, member RAS oncogene family [Pan troglodytes]
Length = 225
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 132/198 (66%), Gaps = 11/198 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 26 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 82
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +FE+V++WK DLDSK L NG+ +P +LLA
Sbjct: 83 AGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLA 142
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM---E 415
+KCD D ++++ C ++ F W E S+K+++ IE++ FLV++I+ + + E
Sbjct: 143 NKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILVNHQSFPNE 202
Query: 416 EEAVERKSSIRLSEETLR 433
E V++ I+L +ETLR
Sbjct: 203 ENDVDK---IKLDQETLR 217
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P P E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 17 PAPETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 68
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 26 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 82
>gi|326671255|ref|XP_003199402.1| PREDICTED: ras-related protein Rab-38-like [Danio rerio]
Length = 210
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 115/175 (65%), Gaps = 7/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ GD VGKTS ++ +V + NY+ T+GVDF+ K+L+ + V+LQ+WDIA
Sbjct: 10 YKILVIGDLGVGKTSIIKRYVHQTYSTNYRATIGVDFALKVLN---WDSETVRLQLWDIA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK DLDSK IL NG + +LLA+
Sbjct: 67 GQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVSKWKEDLDSKLILSNGQSIATVLLAN 126
Query: 361 KCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCD +R N +++ C + F+ W E S+KE++ I D+ NFLV II S+
Sbjct: 127 KCD-QNRDFLTNNGLKMDQYCRENGFVGWFETSAKENVNINDAANFLVKHIIASE 180
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ GD VGKTS ++ +V + NY+ T+GVDF+ K+L+ + V+LQ+WDI
Sbjct: 10 YKILVIGDLGVGKTSIIKRYVHQTYSTNYRATIGVDFALKVLN---WDSETVRLQLWDI 65
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILVIGD VGKTS ++ +V + NY+ T+GVDF+ K+L+
Sbjct: 7 EHLYKILVIGDLGVGKTSIIKRYVHQTYSTNYRATIGVDFALKVLN 52
>gi|350405324|ref|XP_003487400.1| PREDICTED: hypothetical protein LOC100750072 [Bombus impatiens]
Length = 678
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 120/177 (67%), Gaps = 6/177 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+ + ++LQ+WDIA
Sbjct: 475 YKILVIGELGAGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDPHT--IIRLQLWDIA 532
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T + ++VV+WK DLDSK L +G+ +PC+LLA+
Sbjct: 533 GQERFGNMTRVYYKEAVGAFIVFDVTRSATLDAVVKWKQDLDSKVQLPDGSQIPCVLLAN 592
Query: 361 KCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD ++ +N +++ C + NF W E S+KE++ IE++ FLV++I+ + +M
Sbjct: 593 KCDQ-QKEGLVNSPAKMDEYCKEKNFAGWFETSAKENINIEEAARFLVNKILQNDQM 648
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+ + ++LQ+WDI
Sbjct: 475 YKILVIGELGAGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDPHT--IIRLQLWDI 531
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILVIG+ GKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 472 EHLYKILVIGELGAGKTSIIKRYVHQFFSQHYRATIGVDFALKVLN 517
>gi|1388197|gb|AAB02833.1| low-Mr GTP-binding protein Rab32 [Homo sapiens]
Length = 210
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 132/198 (66%), Gaps = 11/198 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 11 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 67
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +FE+V++WK DLDSK L NG+ +P +LLA
Sbjct: 68 AGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLA 127
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM---E 415
+KCD D ++++ C ++ F W E S+K+++ IE++ FLV++I+ + + E
Sbjct: 128 NKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILVNHQSFPNE 187
Query: 416 EEAVERKSSIRLSEETLR 433
E V++ I+L +ETLR
Sbjct: 188 ENDVDK---IKLDQETLR 202
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P P E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 2 PAPETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 53
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 11 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 67
>gi|410295692|gb|JAA26446.1| RAB32, member RAS oncogene family [Pan troglodytes]
Length = 225
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 132/198 (66%), Gaps = 11/198 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 26 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 82
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +FE+V++WK DLDSK L NG+ +P +LLA
Sbjct: 83 AGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLA 142
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM---E 415
+KCD D ++++ C ++ F W E S+K+++ IE++ FLV++I+ + + E
Sbjct: 143 NKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILVNHQSFPNE 202
Query: 416 EEAVERKSSIRLSEETLR 433
E V++ I+L +ETLR
Sbjct: 203 ENDVDK---IKLDQETLR 217
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P P E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 17 PAPETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 68
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 26 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 82
>gi|54696892|gb|AAV38818.1| RAB32, member RAS oncogene family [synthetic construct]
gi|61366667|gb|AAX42890.1| RAB32 member RAS oncogene family [synthetic construct]
Length = 226
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 132/198 (66%), Gaps = 11/198 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 26 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 82
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +FE+V++WK DLDSK L NG+ +P +LLA
Sbjct: 83 AGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLA 142
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM---E 415
+KCD D ++++ C ++ F W E S+K+++ IE++ FLV++I+ + + E
Sbjct: 143 NKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILVNHQSFPNE 202
Query: 416 EEAVERKSSIRLSEETLR 433
E V++ I+L +ETLR
Sbjct: 203 ENDVDK---IKLDQETLR 217
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 26 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 82
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 23 EHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 68
>gi|189053349|dbj|BAG35135.1| unnamed protein product [Homo sapiens]
Length = 225
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 132/196 (67%), Gaps = 11/196 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDIAG 301
+L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDIAG
Sbjct: 28 VLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDIAG 84
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
Q+R+ M+RVYY+ + G ++FD++ +FE+V++WK DLDSK L NG+ +P +LLA+K
Sbjct: 85 QERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLANK 144
Query: 362 CDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM---EEE 417
CD D ++++ C ++ F W E S+K+++ IE++ FLV++I+ +++ EE
Sbjct: 145 CDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILVNRQSFPNEEN 204
Query: 418 AVERKSSIRLSEETLR 433
V++ I+L +ETLR
Sbjct: 205 DVDK---IKLDQETLR 217
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 4/58 (6%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 28 VLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 82
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 23 EHLSKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 68
>gi|5803133|ref|NP_006825.1| ras-related protein Rab-32 [Homo sapiens]
gi|2833245|sp|Q13637.3|RAB32_HUMAN RecName: Full=Ras-related protein Rab-32
gi|20379092|gb|AAM21106.1|AF498958_1 small GTP binding protein RAB32 [Homo sapiens]
gi|1575792|gb|AAB09599.1| low Mr GTP-binding protein Rab32 [Homo sapiens]
gi|15929226|gb|AAH15061.1| RAB32, member RAS oncogene family [Homo sapiens]
gi|54696894|gb|AAV38819.1| RAB32, member RAS oncogene family [Homo sapiens]
gi|61356867|gb|AAX41298.1| RAB32 member RAS oncogene family [synthetic construct]
gi|119568218|gb|EAW47833.1| RAB32, member RAS oncogene family [Homo sapiens]
gi|123987477|gb|ABM83808.1| RAB32, member RAS oncogene family [synthetic construct]
gi|123999094|gb|ABM87130.1| RAB32, member RAS oncogene family [synthetic construct]
gi|261861624|dbj|BAI47334.1| RAB32, member RAS oncogene family [synthetic construct]
Length = 225
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 132/198 (66%), Gaps = 11/198 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 26 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 82
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +FE+V++WK DLDSK L NG+ +P +LLA
Sbjct: 83 AGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLA 142
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM---E 415
+KCD D ++++ C ++ F W E S+K+++ IE++ FLV++I+ + + E
Sbjct: 143 NKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILVNHQSFPNE 202
Query: 416 EEAVERKSSIRLSEETLR 433
E V++ I+L +ETLR
Sbjct: 203 ENDVDK---IKLDQETLR 217
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 26 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 82
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 23 EHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 68
>gi|348508308|ref|XP_003441696.1| PREDICTED: ras-related protein Rab-38-like [Oreochromis niloticus]
Length = 212
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 79/176 (44%), Positives = 116/176 (65%), Gaps = 7/176 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ GD VGKTS ++ +V + F NY+ T+GVDF+ K+L+ + V+LQ+WDIA
Sbjct: 11 YKILVIGDLGVGKTSIIKRYVHHNFSPNYRATIGVDFALKVLN---WDQETVRLQLWDIA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T SFE+V +WK DLDSK L NG + +LLA+
Sbjct: 68 GQERFGNMTRVYYREAMGAFIVFDVTRPASFEAVTKWKEDLDSKLTLANGKHVATVLLAN 127
Query: 361 KCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCD R V N ++E C + F+ W E S+KE++ I+++ N LV II S++
Sbjct: 128 KCD-QGRDVLTNNGIKMEQFCQENGFVGWYETSAKENINIDEAANCLVKHIIASEK 182
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ GD VGKTS ++ +V + F NY+ T+GVDF+ K+L+ + V+LQ+WDI
Sbjct: 11 YKILVIGDLGVGKTSIIKRYVHHNFSPNYRATIGVDFALKVLN---WDQETVRLQLWDI 66
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILVIGD VGKTS ++ +V + F NY+ T+GVDF+ K+L+
Sbjct: 8 EHLYKILVIGDLGVGKTSIIKRYVHHNFSPNYRATIGVDFALKVLN 53
>gi|348518836|ref|XP_003446937.1| PREDICTED: ras-related protein Rab-38-like [Oreochromis niloticus]
Length = 208
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 117/174 (67%), Gaps = 6/174 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ GD VGKTS ++ +V + + NY+ T+GVDF+ K+L+ + V+LQ+WDIA
Sbjct: 10 YKVLVIGDLGVGKTSIIRRYVHHTYSTNYRATIGVDFALKVLN---WDSETVRLQLWDIA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FE+VV+WK DLDSK +L NG + +LLA+
Sbjct: 67 GQERFGNMTRVYYREAMGAFIVFDVTRPTTFEAVVKWKEDLDSKLMLANGKSIATVLLAN 126
Query: 361 KCDLPDRQVEINEI--EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCD R++ N I + C + F+ W E S+K++L I ++ NFLV I+ ++
Sbjct: 127 KCD-QGRELTNNGIKMDQFCKDHGFVGWFETSAKDNLNISEAANFLVKHIMATE 179
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ GD VGKTS ++ +V + + NY+ T+GVDF+ K+L+ + V+LQ+WDI
Sbjct: 10 YKVLVIGDLGVGKTSIIRRYVHHTYSTNYRATIGVDFALKVLN---WDSETVRLQLWDI 65
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 34/46 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIGD VGKTS ++ +V + + NY+ T+GVDF+ K+L+
Sbjct: 7 EHLYKVLVIGDLGVGKTSIIRRYVHHTYSTNYRATIGVDFALKVLN 52
>gi|410915796|ref|XP_003971373.1| PREDICTED: ras-related protein Rab-38-like [Takifugu rubripes]
Length = 208
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 116/174 (66%), Gaps = 6/174 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ GD VGKTS ++ +V + +NY+ T+GVDF+ K+L+ + V+LQ+WDIA
Sbjct: 10 YKVLVIGDLGVGKTSIIRRYVHQTYSNNYRATIGVDFALKVLN---WDSETVRLQLWDIA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK DLDSK +L +G + +LLA+
Sbjct: 67 GQERFGNMTRVYYREAMGAFIVFDVTRHTTFEAVAKWKEDLDSKLMLADGQSIATVLLAN 126
Query: 361 KCDLPDRQVEINEI--EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCD R++ N I + C + F+ W E S+K++L I D+ NFLV ++ ++
Sbjct: 127 KCD-QGRELANNAIKMDQFCKDHGFVGWFETSAKDNLNISDAANFLVKHMMAAE 179
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ GD VGKTS ++ +V + +NY+ T+GVDF+ K+L+ + V+LQ+WDI
Sbjct: 10 YKVLVIGDLGVGKTSIIRRYVHQTYSNNYRATIGVDFALKVLN---WDSETVRLQLWDI 65
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 34/46 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIGD VGKTS ++ +V + +NY+ T+GVDF+ K+L+
Sbjct: 7 EHLYKVLVIGDLGVGKTSIIRRYVHQTYSNNYRATIGVDFALKVLN 52
>gi|307202148|gb|EFN81648.1| Ras-related protein Rab-32 [Harpegnathos saltator]
Length = 657
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 118/176 (67%), Gaps = 4/176 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+ + ++LQ+WDIA
Sbjct: 454 YKILVIGELGAGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDPHT--IIRLQLWDIA 511
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T + ++VV+WK DLDSK L +G+ +PC+LLA+
Sbjct: 512 GQERFGNMTRVYYKEAVGAFIVFDVTRSATLDAVVKWKQDLDSKVQLPDGSPIPCVLLAN 571
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD + N+++ C + NF W E S+KE++ IE++ FLV++I+ + ++
Sbjct: 572 KCDQHKEGLVNSPNKMDEYCKEKNFSGWFETSAKENINIEEAARFLVNKILQNDQL 627
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+ + ++LQ+WDI
Sbjct: 454 YKILVIGELGAGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDPHT--IIRLQLWDI 510
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 5/67 (7%)
Query: 85 KSNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD 144
KS++ +P +G E R E + KILVIG+ GKTS ++ +V F +Y+ T+GVD
Sbjct: 435 KSSNNAPNLGGVG-EKR----EHLYKILVIGELGAGKTSIIKRYVHQFFSQHYRATIGVD 489
Query: 145 FSTKLLS 151
F+ K+L+
Sbjct: 490 FALKVLN 496
>gi|61366674|gb|AAX42891.1| RAB32 member RAS oncogene family [synthetic construct]
Length = 226
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 132/198 (66%), Gaps = 11/198 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 26 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 82
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +FE+V++WK DLDSK L NG+ +P +LLA
Sbjct: 83 AGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLA 142
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM---E 415
+KCD D ++++ C ++ F W E S+K+++ IE++ FLV++I+ + + E
Sbjct: 143 NKCDQNKDSSQSPSQVDQSCKEHGFAGWFETSAKDNINIEEAARFLVEKILVNHQSFPNE 202
Query: 416 EEAVERKSSIRLSEETLR 433
E V++ I+L +ETLR
Sbjct: 203 ENDVDK---IKLDQETLR 217
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 26 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 82
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 23 EHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 68
>gi|410909794|ref|XP_003968375.1| PREDICTED: ras-related protein Rab-38-like [Takifugu rubripes]
Length = 212
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/176 (44%), Positives = 115/176 (65%), Gaps = 7/176 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ GD VGKTS ++ +V + F NY+ T+GVDF+ K+L+ + V+LQ+WDIA
Sbjct: 11 YKILVIGDLGVGKTSIIKRYVHHNFSPNYRATIGVDFALKVLN---WDQETVRLQLWDIA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T SFE+V +WK DLDSK L NG + LLLA+
Sbjct: 68 GQERFGNMTRVYYREAMGAFIVFDVTRPASFEAVTKWKEDLDSKVTLANGKHIATLLLAN 127
Query: 361 KCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCD D V N +++ C F+ W E S+KE++ I+++ N LV II S++
Sbjct: 128 KCD-QDNDVLTNNGIKMDQFCQDNGFVGWYETSAKENINIDEAANCLVKHIIASEK 182
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ GD VGKTS ++ +V + F NY+ T+GVDF+ K+L+ + V+LQ+WDI
Sbjct: 11 YKILVIGDLGVGKTSIIKRYVHHNFSPNYRATIGVDFALKVLN---WDQETVRLQLWDI 66
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILVIGD VGKTS ++ +V + F NY+ T+GVDF+ K+L+
Sbjct: 8 EHLYKILVIGDLGVGKTSIIKRYVHHNFSPNYRATIGVDFALKVLN 53
>gi|395531196|ref|XP_003767668.1| PREDICTED: ras-related protein Rab-7L1 isoform 1 [Sarcophilus
harrisii]
Length = 204
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 113/173 (65%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K++ V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVVQWSD--SEMVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLD K L +G +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDAAACVIMFDVTNATTFSNSQRWKQDLDCKLTLPSGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K DL V ++I+ + F W E S KE+ I ++M L+++++ + R
Sbjct: 126 KSDLSPWAVTRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEQMMANTR 178
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K++ V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVVQWSD--SEMVRLQLWDI 64
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K++
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVV 49
>gi|297679366|ref|XP_002817507.1| PREDICTED: ras-related protein Rab-32 [Pongo abelii]
Length = 225
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 132/198 (66%), Gaps = 11/198 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 26 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 82
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +FE+V++WK DLDSK L NG+ +P +LLA
Sbjct: 83 AGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLA 142
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM---E 415
+KCD D ++++ C ++ F W E S+K+++ IE++ FLV++I+ + + E
Sbjct: 143 NKCDQNKDSSQSPSQMDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILANHQSFPNE 202
Query: 416 EEAVERKSSIRLSEETLR 433
E V++ I+L +ET+R
Sbjct: 203 ENDVDK---IKLDQETMR 217
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 26 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 82
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 23 EHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 68
>gi|383866195|ref|XP_003708556.1| PREDICTED: uncharacterized protein LOC100874872 [Megachile
rotundata]
Length = 665
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 119/177 (67%), Gaps = 6/177 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+ + ++LQ+WDIA
Sbjct: 462 YKILVIGELGAGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDPH--TIIRLQLWDIA 519
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T + ++VV+WK DLDSK L +G+ +PC+LLA+
Sbjct: 520 GQERFGNMTRVYYKEAVGAFIVFDVTRSATLDAVVKWKQDLDSKVQLPDGSPIPCVLLAN 579
Query: 361 KCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD + +N +++ C + NF W E S+KE++ IE++ FLV++I+ + ++
Sbjct: 580 KCDQQKEGL-VNSPAKMDEYCKEKNFAGWFETSAKENINIEEAARFLVNKILQNDQL 635
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+ + ++LQ+WDI
Sbjct: 462 YKILVIGELGAGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDPH--TIIRLQLWDI 518
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 78 LPARELCKSNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNY 137
+ ++E S + +P A V E R E + KILVIG+ GKTS ++ +V F +Y
Sbjct: 437 IASQESMSSQNNAPNAGV--GEKR----EHLYKILVIGELGAGKTSIIKRYVHQFFSQHY 490
Query: 138 KNTVGVDFSTKLLS 151
+ T+GVDF+ K+L+
Sbjct: 491 RATIGVDFALKVLN 504
>gi|405967886|gb|EKC33005.1| Ras-related protein Rab-32 [Crassostrea gigas]
Length = 270
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 113/169 (66%), Gaps = 4/169 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+ V+LQ+WDIA
Sbjct: 19 YKILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWD--ADTIVRLQLWDIA 76
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + GC I+FD+T +F++VV+WK DLDSK L +G+ +PC+LLA+
Sbjct: 77 GQERFGNMTRVYYKEAVGCFIVFDVTRASTFDAVVKWKTDLDSKVQLADGSPVPCVLLAN 136
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
KCD V N+++ C + F+ W E S+KE++ I+DS FLV R
Sbjct: 137 KCDQTKEGVVNNSNQMDDFCKEKGFIGWFETSAKENINIDDSARFLVQR 185
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+ V+LQ+WDI
Sbjct: 19 YKILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWD--ADTIVRLQLWDI 75
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILVIG+ GKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 16 EHLYKILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLN 61
>gi|410960188|ref|XP_003986676.1| PREDICTED: ras-related protein Rab-32 [Felis catus]
Length = 225
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 127/195 (65%), Gaps = 5/195 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 26 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 82
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +FE+V++WK DLDSK L NG+ +P +LLA
Sbjct: 83 AGQERFGNMTRVYYKEAVGAFVVFDISRGSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLA 142
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
+KCD D ++++ C ++ F W E S+K+++ I+++ FLV+ I+ + +
Sbjct: 143 NKCDQKKDGGQNPSQLDQFCKEHGFTGWFETSAKDNINIDEAARFLVENILANHQSFPSE 202
Query: 419 VERKSSIRLSEETLR 433
+ I+L +ETLR
Sbjct: 203 ENNEDKIKLDQETLR 217
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 19 PETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 68
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 26 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 82
>gi|302564755|ref|NP_001180823.1| ras-related protein Rab-32 [Macaca mulatta]
gi|402868027|ref|XP_003898124.1| PREDICTED: ras-related protein Rab-32 [Papio anubis]
gi|380809090|gb|AFE76420.1| ras-related protein Rab-32 [Macaca mulatta]
Length = 225
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 127/195 (65%), Gaps = 5/195 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 26 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 82
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +FE+V++WK DLDSK L NG+ +P +LLA
Sbjct: 83 AGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLA 142
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
+KCD D ++++ C ++ F W E S+K+++ IE++ FLV++I+ + +
Sbjct: 143 NKCDQNKDSSQTPSQMDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILANHQSFPNE 202
Query: 419 VERKSSIRLSEETLR 433
I+L +ETLR
Sbjct: 203 ENDVGKIKLDQETLR 217
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 26 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 82
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 23 EHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 68
>gi|47227097|emb|CAG00459.1| unnamed protein product [Tetraodon nigroviridis]
Length = 218
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 116/174 (66%), Gaps = 6/174 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD VGKTS ++ +V + +NY+ T+GVDF+ K+L+ + V+LQ+WDIA
Sbjct: 20 FKVLVIGDLGVGKTSIIRRYVHQAYSNNYRATIGVDFAMKVLN---WDSETVRLQLWDIA 76
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK DLDSK +L +G + +LLA+
Sbjct: 77 GQERFGNMTRVYYREAMGAFIVFDVTRHTTFEAVTKWKEDLDSKLMLADGQSIAMVLLAN 136
Query: 361 KCDLPDRQVEINEI--EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCD R++ N I + C + F+ W E S+K++L I D+ NFLV ++ ++
Sbjct: 137 KCD-QGRELTNNAIKMDQFCKDHGFLGWFETSAKDNLNINDAANFLVKHMMATE 189
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 158 RPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 217
P G + + +L+ GD VGKTS ++ +V + +NY+ T+GVDF+ K+L+ +
Sbjct: 7 HPVGMQGLRKEHLFKVLVIGDLGVGKTSIIRRYVHQAYSNNYRATIGVDFAMKVLN---W 63
Query: 218 GGRPVKLQIWDI 229
V+LQ+WDI
Sbjct: 64 DSETVRLQLWDI 75
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 34/46 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIGD VGKTS ++ +V + +NY+ T+GVDF+ K+L+
Sbjct: 17 EHLFKVLVIGDLGVGKTSIIRRYVHQAYSNNYRATIGVDFAMKVLN 62
>gi|126306731|ref|XP_001365593.1| PREDICTED: ras-related protein Rab-7L1-like isoform 1 [Monodelphis
domestica]
Length = 204
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 113/173 (65%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYCQDSFSRHYKSTVGVDFALKVLQWSD--SEMVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLD K L +G +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNCQKWKQDLDCKLTLPSGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K DL + ++I+ + F W E S KE+ + ++M L+++++ + R
Sbjct: 126 KSDLSPWAMTRDQIDRFSKENGFTGWTETSVKENKNVNEAMRVLIEQMMANTR 178
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYCQDSFSRHYKSTVGVDFALKVLQWSD--SEMVRLQLWDI 64
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYCQDSFSRHYKSTVGVDFALKVL 49
>gi|328778015|ref|XP_001122603.2| PREDICTED: hypothetical protein LOC726887 [Apis mellifera]
Length = 637
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 119/177 (67%), Gaps = 6/177 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+ + ++LQ+WDIA
Sbjct: 434 YKILVIGELGAGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDPHT--IIRLQLWDIA 491
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T + ++VV+WK DLDSK L +G+ +PC+LLA+
Sbjct: 492 GQERFGNMTRVYYKEAVGAFIVFDVTRSATLDAVVKWKQDLDSKVQLPDGSPIPCVLLAN 551
Query: 361 KCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD + +N +++ C + NF W E S+KE++ IE++ FLV++I+ + ++
Sbjct: 552 KCDQQKEGL-VNSPAKMDEYCKEKNFAGWFETSAKENINIEEAARFLVNKILQNDQL 607
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+ + ++LQ+WDI
Sbjct: 434 YKILVIGELGAGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDPHT--IIRLQLWDI 490
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 8/76 (10%)
Query: 76 NALPARELCKSNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLD 135
NA+ + ++NSP+ + +G E R E + KILVIG+ GKTS ++ +V F
Sbjct: 409 NAMEKSKSSQNNSPN---AGLG-EKR----EHLYKILVIGELGAGKTSIIKRYVHQFFSQ 460
Query: 136 NYKNTVGVDFSTKLLS 151
+Y+ T+GVDF+ K+L+
Sbjct: 461 HYRATIGVDFALKVLN 476
>gi|157114529|ref|XP_001652315.1| rab32 [Aedes aegypti]
gi|157114533|ref|XP_001652317.1| rab32 [Aedes aegypti]
gi|108877258|gb|EAT41483.1| AAEL006880-PB [Aedes aegypti]
gi|108877260|gb|EAT41485.1| AAEL006880-PA [Aedes aegypti]
Length = 294
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 116/175 (66%), Gaps = 4/175 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L+ + ++LQ+WDIA
Sbjct: 92 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLNWDQ--NTIIRLQLWDIA 149
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FE+V++WK DLDSK L NG +PC+LLA+
Sbjct: 150 GQERFGNMTRVYYKEAVGAFIVFDVTRNATFEAVIKWKQDLDSKVQLPNGKPIPCILLAN 209
Query: 361 KCDLPDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K D P + + +++ ++ F W E S+KE++ IE++ LV++I+ + +
Sbjct: 210 KSDQPKQGIVTTPAKLDEYVKEHGFAGWFETSAKENVNIEEAAKSLVNKILMNDK 264
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L+ + ++LQ+WDI
Sbjct: 92 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLNWDQ--NTIIRLQLWDI 148
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 11/119 (9%)
Query: 34 LNTQAVDLAEDAGDGSKSNSPSPARARRSRKNCAETYAHKHINALPARELCKSN-SPSPR 92
L+ +V A+ +G + +S +R ++ + H+ + R + KSN S +P
Sbjct: 26 LDLGSVKSADISGTLRRRSSILRGWIKRGAESRGGSVTHQRQHLQQGRTMTKSNMSTAPT 85
Query: 93 ASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E R E + KILVIG+ GKTS+++ +V F NY+ T+GVDF+ K+L+
Sbjct: 86 ------EKR----EHLYKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLN 134
>gi|321466231|gb|EFX77228.1| hypothetical protein DAPPUDRAFT_305892 [Daphnia pulex]
Length = 668
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 112/171 (65%), Gaps = 4/171 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ G+ GKTS ++ +V F +Y+ T+GVDF+ K++ + ++LQ+WDIA
Sbjct: 465 YKVLVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVVHWDQ--STVIRLQLWDIA 522
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FESV +WK DLD+K L +G+ +PC+LLA+
Sbjct: 523 GQERFGNMTRVYYKEAVGAFIVFDVTRSSTFESVAKWKQDLDTKVQLPDGSPIPCVLLAN 582
Query: 361 KCDLPDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCD P + + +++ C + F W E S+K+++ I+D+ FLV I+
Sbjct: 583 KCDQPKEGIAASPAKMDEYCREKGFAGWFETSAKDNINIDDAAKFLVGTIL 633
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ G+ GKTS ++ +V F +Y+ T+GVDF+ K++ + ++LQ+WDI
Sbjct: 465 YKVLVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVVHWDQ--STVIRLQLWDI 521
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIG+ GKTS ++ +V F +Y+ T+GVDF+ K++
Sbjct: 462 EHLYKVLVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVV 506
>gi|332213568|ref|XP_003255895.1| PREDICTED: ras-related protein Rab-32 [Nomascus leucogenys]
Length = 225
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 131/198 (66%), Gaps = 11/198 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 26 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 82
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +FE+V++WK DLDSK L NG+ +P +LLA
Sbjct: 83 AGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLA 142
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM---E 415
+KCD D ++++ C ++ F W E S+K+++ IE++ FLV++I+ + + E
Sbjct: 143 NKCDQNKDSSQSPSQMDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILANHQSFPNE 202
Query: 416 EEAVERKSSIRLSEETLR 433
E V++ I+L +E LR
Sbjct: 203 ENDVDK---IKLDQENLR 217
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 26 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 82
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 23 EHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 68
>gi|403269920|ref|XP_003926953.1| PREDICTED: ras-related protein Rab-32, partial [Saimiri boliviensis
boliviensis]
Length = 212
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 126/195 (64%), Gaps = 5/195 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 13 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 69
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G I+FD++ +FE+V++WK DLDSK L NG+ +P +LLA
Sbjct: 70 AGQERFGNMTRVYYKEAVGAFIVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLA 129
Query: 360 SKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
+KCD D ++++ C ++ F W E S+K+++ I+++ FLV+ I+ + +
Sbjct: 130 NKCDQNRDTSQSPSQMDQFCKEHGFTGWFETSAKDNINIDEASRFLVENILANHQSFSNE 189
Query: 419 VERKSSIRLSEETLR 433
I+L +ETLR
Sbjct: 190 DNDAGKIKLDQETLR 204
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 166 IQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKL 224
I+ + +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+L
Sbjct: 8 IREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRL 64
Query: 225 QIWDI 229
Q+WDI
Sbjct: 65 QLWDI 69
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 6 PEIREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 55
>gi|355748839|gb|EHH53322.1| hypothetical protein EGM_13940, partial [Macaca fascicularis]
Length = 198
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 126/193 (65%), Gaps = 5/193 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDIAG 301
+L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDIAG
Sbjct: 1 VLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDIAG 57
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
Q+R+ M+RVYY+ + G ++FD++ +FE+V++WK DLDSK L NG+ +P +LLA+K
Sbjct: 58 QERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLANK 117
Query: 362 CDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
CD D ++++ C ++ F W E S+K+++ IE++ FLV++I+ + +
Sbjct: 118 CDQNKDSSQTPSQMDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILANHQSFPNEEN 177
Query: 421 RKSSIRLSEETLR 433
I+L +ETLR
Sbjct: 178 DVGKIKLDQETLR 190
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 4/58 (6%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 1 VLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 55
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 111 ILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 1 VLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 41
>gi|307182735|gb|EFN69859.1| Ras-related protein Rab-32 [Camponotus floridanus]
Length = 658
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 117/172 (68%), Gaps = 6/172 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+ + ++LQ+WDIA
Sbjct: 455 YKILVIGELGAGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDPHT--IIRLQLWDIA 512
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T + ++VV+WK DLDSK L +G+ +PC+LLA+
Sbjct: 513 GQERFGNMTRVYYKEAVGAFIVFDVTRSATLDAVVKWKQDLDSKVQLPDGSPIPCVLLAN 572
Query: 361 KCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCD ++ +N +++ C + NF W E S+KE++ IE++ FLV++I+
Sbjct: 573 KCD-QQKEGLVNSPAKMDEYCKEKNFSGWFETSAKENINIEEAAKFLVNKIL 623
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+ + ++LQ+WDI
Sbjct: 455 YKILVIGELGAGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDPHT--IIRLQLWDI 511
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 88 SPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147
S S AS +G + + E + KILVIG+ GKTS ++ +V F +Y+ T+GVDF+
Sbjct: 437 SSSSNASNLGVDEK---REHLYKILVIGELGAGKTSIIKRYVHQFFSQHYRATIGVDFAL 493
Query: 148 KLLS 151
K+L+
Sbjct: 494 KVLN 497
>gi|432892465|ref|XP_004075794.1| PREDICTED: ras-related protein Rab-38-like [Oryzias latipes]
Length = 212
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 114/174 (65%), Gaps = 5/174 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ GD VGKTS ++ +V + F NY+ T+GVDF+ K+L+ ++ V+LQ+WDIA
Sbjct: 11 YKILVIGDLGVGKTSIIKRYVHHNFSPNYRATIGVDFALKVLNWEQ---ETVRLQLWDIA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T SFE+V +WK DLDSK L NG + +LLA+
Sbjct: 68 GQERFGNMTRVYYREAMGAFIVFDVTRPASFEAVTKWKEDLDSKVTLSNGKHVATVLLAN 127
Query: 361 KCDLPDRQVEINEI--EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCD + N I + C + F+ W E S+KE++ I+++ N LV II S+
Sbjct: 128 KCDQGQDVLTNNGIKMDQFCQENGFVGWFETSAKENINIDEAANCLVKHIISSE 181
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ GD VGKTS ++ +V + F NY+ T+GVDF+ K+L+ ++ V+LQ+WDI
Sbjct: 11 YKILVIGDLGVGKTSIIKRYVHHNFSPNYRATIGVDFALKVLNWEQ---ETVRLQLWDI 66
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILVIGD VGKTS ++ +V + F NY+ T+GVDF+ K+L+
Sbjct: 8 ERLYKILVIGDLGVGKTSIIKRYVHHNFSPNYRATIGVDFALKVLN 53
>gi|51859426|gb|AAH81732.1| Rab7l1 protein [Rattus norvegicus]
Length = 167
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 106/161 (65%), Gaps = 2/161 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L +G +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL V ++I+ + F W E S KE+ I ++M
Sbjct: 126 KSDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAM 166
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDI 64
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVL 49
>gi|242005923|ref|XP_002423809.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus
corporis]
gi|212507025|gb|EEB11071.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus
corporis]
Length = 218
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 121/184 (65%), Gaps = 4/184 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+ ++LQ+WDIA
Sbjct: 16 YKILVVGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWD--SNTIIRLQLWDIA 73
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +F++VV+WK DLDSK L +G+ +PC+LLA+
Sbjct: 74 GQERFGNMTRVYYKEAVGAFIVFDVTRSATFDAVVKWKEDLDSKVQLSDGSPIPCILLAN 133
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
KCD P + N+++ C + F +W E S+KE++ IE++ LV++I+ + +M E
Sbjct: 134 KCDQPKEGLVNNKNKMDEYCKEKGFSTWYETSAKENINIEEASRSLVNKILQNDKMMESG 193
Query: 419 VERK 422
+ K
Sbjct: 194 DQSK 197
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+ ++LQ+WDI
Sbjct: 16 YKILVVGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWD--SNTIIRLQLWDI 72
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P E + KILV+G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 7 PVEGQREHLYKILVVGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLN 58
>gi|91082557|ref|XP_974043.1| PREDICTED: similar to lightoid CG8024-PB [Tribolium castaneum]
gi|270007568|gb|EFA04016.1| hypothetical protein TcasGA2_TC014165 [Tribolium castaneum]
Length = 371
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 113/171 (66%), Gaps = 4/171 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ GD GKTS ++ +V F +Y+ T+GVDF+ K+L+ ++LQ+WDIA
Sbjct: 169 YKILVIGDLGAGKTSIIKRYVHRFFTQHYRATIGVDFALKVLNWD--DNTLIRLQLWDIA 226
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY M+RVYY+ + G I+FD+T +FESV +WK DLDSK L +G+ +PC+LLA+
Sbjct: 227 GQERYGNMTRVYYKEAVGAFIVFDVTRTNTFESVAKWKSDLDSKVQLSDGSPIPCVLLAN 286
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCD + N+++ C + F +W E S+K+++ I+++ N LV +I+
Sbjct: 287 KCDQQKEGLVNHPNKMDEYCKENGFTTWFETSAKDNINIDEAANALVAKIL 337
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ GD GKTS ++ +V F +Y+ T+GVDF+ K+L+ ++LQ+WDI
Sbjct: 169 YKILVIGDLGAGKTSIIKRYVHRFFTQHYRATIGVDFALKVLNWD--DNTLIRLQLWDI 225
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 91 PRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P A+V + + KILVIGD GKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 151 PAATVSYANKTTERKDHLYKILVIGDLGAGKTSIIKRYVHRFFTQHYRATIGVDFALKVL 210
Query: 151 S 151
+
Sbjct: 211 N 211
>gi|395834788|ref|XP_003790374.1| PREDICTED: uncharacterized protein LOC100955231 [Otolemur
garnettii]
Length = 518
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 128/197 (64%), Gaps = 5/197 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 319 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 375
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +FE+V++WK+DLDSK L NG+ +P +LLA
Sbjct: 376 AGQERFGNMTRVYYKEAVGAFVVFDISRGSTFEAVLKWKNDLDSKVHLPNGSPIPAVLLA 435
Query: 360 SKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
+KCD D ++++ C ++ F W E S+K+++ I+++ FLV+ I+ + +
Sbjct: 436 NKCDQKRDGGQSPSQMDQFCSEHGFTGWFETSAKDNINIDEAARFLVENILANHQSFPSE 495
Query: 419 VERKSSIRLSEETLRDD 435
I+L +ETL+ +
Sbjct: 496 ENDVGKIKLDQETLKAE 512
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 312 PETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 361
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 319 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 375
>gi|355561998|gb|EHH18630.1| hypothetical protein EGK_15275, partial [Macaca mulatta]
Length = 197
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 126/192 (65%), Gaps = 5/192 (2%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDIAGQ 302
L+ G+ VGKTS ++ +V F +Y++T+GVDF+ K+L+ + R V+LQ+WDIAGQ
Sbjct: 1 LVIGELGVGKTSIIKRYVHQLFSQHYRSTIGVDFALKVLN---WDSRTLVRLQLWDIAGQ 57
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ M+RVYY+ + G ++FD++ +FE+V++WK DLDSK L NG+ +P +LLA+KC
Sbjct: 58 ERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLANKC 117
Query: 363 DL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
D D ++++ C ++ F W E S+K+++ IE++ FLV++I+ + +
Sbjct: 118 DQNKDSSQTPSQMDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILANHQSFPNEEND 177
Query: 422 KSSIRLSEETLR 433
I+L +ETLR
Sbjct: 178 VGKIKLDQETLR 189
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 4/57 (7%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
L+ G+ VGKTS ++ +V F +Y++T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 1 LVIGELGVGKTSIIKRYVHQLFSQHYRSTIGVDFALKVLN---WDSRTLVRLQLWDI 54
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 112 LVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
LVIG+ VGKTS ++ +V F +Y++T+GVDF+ K+L+
Sbjct: 1 LVIGELGVGKTSIIKRYVHQLFSQHYRSTIGVDFALKVLN 40
>gi|291397122|ref|XP_002714910.1| PREDICTED: low-Mr GTP-binding protein Rab32-like [Oryctolagus
cuniculus]
Length = 230
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 127/196 (64%), Gaps = 7/196 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 31 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 87
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +FE+V++WK DLDSK L NG+ +P +LLA
Sbjct: 88 AGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSAIPAVLLA 147
Query: 360 SKCDLPDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
+KCD R+ N +++ C ++ F W E S+K+++ I+++ FLV+ I+ + +
Sbjct: 148 NKCD-QKREGGQNPPQMDQFCKEHGFTGWFETSAKDNINIDEAARFLVENILANHQSLPN 206
Query: 418 AVERKSSIRLSEETLR 433
I+L +ETLR
Sbjct: 207 EENDVGKIKLDQETLR 222
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 31 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 87
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 28 EHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 73
>gi|390369193|ref|XP_782400.2| PREDICTED: ras-related protein Rab-32-like [Strongylocentrotus
purpuratus]
Length = 214
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 126/202 (62%), Gaps = 15/202 (7%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+++ ++LQ+WDIA
Sbjct: 12 YKVLVIGDLGVGKTSVIKRYVHQFFSQHYRATIGVDFALKVINWD--ADTLIRLQLWDIA 69
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FE+V +WKHDLDSK L NG +P +LLA+
Sbjct: 70 GQERFGNMTRVYYKEAVGAFIVFDVTRVSTFEAVAKWKHDLDSKVQLPNGTAIPAVLLAN 129
Query: 361 KCDLPDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
KCD + N +++ C F++W E S+K+++ I+++ FLV I+ + ++A
Sbjct: 130 KCDQTKEGLVNNSSQMDEYCKDKGFINWFETSAKDNINIDEAARFLVTSILAN----DKA 185
Query: 419 VERKSSIRLSEETLRDDQPKKL 440
+ EET +D+ P KL
Sbjct: 186 IHH-------EETEQDNDPFKL 200
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+++ ++LQ+WDI
Sbjct: 12 YKVLVIGDLGVGKTSVIKRYVHQFFSQHYRATIGVDFALKVINWD--ADTLIRLQLWDI 68
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+++
Sbjct: 9 EHLYKVLVIGDLGVGKTSVIKRYVHQFFSQHYRATIGVDFALKVIN 54
>gi|296199411|ref|XP_002747112.1| PREDICTED: ras-related protein Rab-32 [Callithrix jacchus]
Length = 225
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 126/195 (64%), Gaps = 5/195 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 26 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 82
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +FE+V++WK DLDSK L NG+ +P +LLA
Sbjct: 83 AGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLA 142
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
+KCD D ++++ C ++ F W E S+K+++ I+++ FLV+ I+ + +
Sbjct: 143 NKCDQNRDTSQSPSQMDQFCKEHGFTGWFETSAKDNINIDEASRFLVENILANHQSFPNE 202
Query: 419 VERKSSIRLSEETLR 433
I+L +ETLR
Sbjct: 203 DNDAGKIKLDQETLR 217
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 166 IQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKL 224
I+ + +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+L
Sbjct: 21 IREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRL 77
Query: 225 QIWDI 229
Q+WDI
Sbjct: 78 QLWDI 82
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 19 PEIREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 68
>gi|198460156|ref|XP_001361630.2| GA20772 [Drosophila pseudoobscura pseudoobscura]
gi|198136921|gb|EAL26209.2| GA20772 [Drosophila pseudoobscura pseudoobscura]
Length = 936
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 115/176 (65%), Gaps = 4/176 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L G V+LQ+WDIA
Sbjct: 733 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLQWD--GNTIVRLQLWDIA 790
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +F+ V +WK DLDSK L +G+ +PC+LLA+
Sbjct: 791 GQERFGNMTRVYYKEAVGAFIVFDVTRSGTFDCVSKWKEDLDSKVQLPDGSPIPCILLAN 850
Query: 361 KCDLPDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD + + N +++ + F W E S+KE++ I+++ LV++I+ + ++
Sbjct: 851 KCDQEKQGIITNPEKMDEYVRENGFAGWFETSAKENINIDEASRALVNKILINDKL 906
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KILVIG+ GKTS+++ +V F NY+ T+GVDF+ K+L
Sbjct: 730 EHLYKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVL 774
>gi|195154130|ref|XP_002017975.1| GL17459 [Drosophila persimilis]
gi|194113771|gb|EDW35814.1| GL17459 [Drosophila persimilis]
Length = 931
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 115/176 (65%), Gaps = 4/176 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L G V+LQ+WDIA
Sbjct: 728 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLQWD--GNTIVRLQLWDIA 785
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +F+ V +WK DLDSK L +G+ +PC+LLA+
Sbjct: 786 GQERFGNMTRVYYKEAVGAFIVFDVTRSGTFDCVSKWKEDLDSKVQLPDGSPIPCILLAN 845
Query: 361 KCDLPDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD + + N +++ + F W E S+KE++ I+++ LV++I+ + ++
Sbjct: 846 KCDQEKQGIITNPEKMDEYVRENGFAGWFETSAKENINIDEASRALVNKILINDKL 901
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KILVIG+ GKTS+++ +V F NY+ T+GVDF+ K+L
Sbjct: 725 EHLYKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVL 769
>gi|157114531|ref|XP_001652316.1| rab32 [Aedes aegypti]
gi|403182835|gb|EJY57660.1| AAEL006880-PC [Aedes aegypti]
Length = 232
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 116/175 (66%), Gaps = 4/175 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L+ + ++LQ+WDIA
Sbjct: 30 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLNWDQ--NTIIRLQLWDIA 87
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FE+V++WK DLDSK L NG +PC+LLA+
Sbjct: 88 GQERFGNMTRVYYKEAVGAFIVFDVTRNATFEAVIKWKQDLDSKVQLPNGKPIPCILLAN 147
Query: 361 KCDLPDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K D P + + +++ ++ F W E S+KE++ IE++ LV++I+ + +
Sbjct: 148 KSDQPKQGIVTTPAKLDEYVKEHGFAGWFETSAKENVNIEEAAKSLVNKILMNDK 202
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L+ + ++LQ+WDI
Sbjct: 30 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLNWDQ--NTIIRLQLWDI 86
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILVIG+ GKTS+++ +V F NY+ T+GVDF+ K+L+
Sbjct: 27 EHLYKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLN 72
>gi|354497825|ref|XP_003511018.1| PREDICTED: ras-related protein Rab-32-like [Cricetulus griseus]
gi|344237517|gb|EGV93620.1| Ras-related protein Rab-32 [Cricetulus griseus]
Length = 223
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 126/194 (64%), Gaps = 5/194 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F NY+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 24 FKVLVIGELGVGKTSIIKRYVHQLFSQNYRATIGVDFALKVLN---WDSRTLVRLQLWDI 80
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FDL+ +FE+V++WK DLDSK L NG+ +P +LLA
Sbjct: 81 AGQERFGNMTRVYYKEALGAFVVFDLSRGSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLA 140
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
+KCD D ++++ C + F+ W E S+K+++ I+++ FLV+ I+ +++
Sbjct: 141 NKCDQKKDGAQSPSQMDQFCKDHGFIGWFETSAKDNINIDEATRFLVENILANQQNFPSE 200
Query: 419 VERKSSIRLSEETL 432
I+L++E L
Sbjct: 201 ENDMDKIKLTDEPL 214
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P P E + K+LVIG+ VGKTS ++ +V F NY+ T+GVDF+ K+L+
Sbjct: 15 PAPETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQNYRATIGVDFALKVLN 66
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F NY+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 24 FKVLVIGELGVGKTSIIKRYVHQLFSQNYRATIGVDFALKVLN---WDSRTLVRLQLWDI 80
>gi|432896027|ref|XP_004076264.1| PREDICTED: ras-related protein Rab-38-like [Oryzias latipes]
Length = 218
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 117/173 (67%), Gaps = 4/173 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ GD VGKTS ++ +V + NY+ T+GVDF+ K+L+ + V+LQ+WDIA
Sbjct: 20 YKVLVIGDLGVGKTSIIRRYVHQTYSTNYRATIGVDFALKVLN---WDSETVRLQLWDIA 76
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FE+V++WK DLDSK +L NG+ + +LLA+
Sbjct: 77 GQERFGNMTRVYYREAMGAFIVFDVTRPTTFEAVLKWKEDLDSKAMLANGSSIATVLLAN 136
Query: 361 KCD-LPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCD + D +++ C + F+ W E S+K++L ++++ NFL+ ++ ++
Sbjct: 137 KCDQIRDLTNNGLKMDQFCKDHGFIGWFETSAKDNLNLKEAANFLIKHMMATE 189
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 158 RPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 217
R G S + Y +L+ GD VGKTS ++ +V + NY+ T+GVDF+ K+L+ +
Sbjct: 7 RTNGMRSLQKEHLYKVLVIGDLGVGKTSIIRRYVHQTYSTNYRATIGVDFALKVLN---W 63
Query: 218 GGRPVKLQIWDI 229
V+LQ+WDI
Sbjct: 64 DSETVRLQLWDI 75
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 101 RPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
R E + K+LVIGD VGKTS ++ +V + NY+ T+GVDF+ K+L+
Sbjct: 12 RSLQKEHLYKVLVIGDLGVGKTSIIRRYVHQTYSTNYRATIGVDFALKVLN 62
>gi|426235199|ref|XP_004011577.1| PREDICTED: uncharacterized protein LOC101102738 [Ovis aries]
Length = 443
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 128/197 (64%), Gaps = 6/197 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 245 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 301
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +F++V++WK DLDSK L NG+ +P +LLA
Sbjct: 302 AGQERFGNMTRVYYKEAVGAFVVFDISRGSTFDAVLKWKSDLDSKVHLPNGSPIPAVLLA 361
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
+KCD D ++++ C ++ F W E S+K+++ I+++ FLV+ I+ + +
Sbjct: 362 NKCDQKKDSGQTPSQMDQFCKEHGFTGWFETSAKDNVNIDEAARFLVENILANHQSFPNE 421
Query: 419 VERKSSIRLSEETLRDD 435
E I+L EET++ +
Sbjct: 422 -ENDGRIKLDEETVKKE 437
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P +E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 238 PETSEHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 287
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 6/68 (8%)
Query: 165 PIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP- 221
P +T +L +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R
Sbjct: 237 PPETSEHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTL 293
Query: 222 VKLQIWDI 229
V+LQ+WDI
Sbjct: 294 VRLQLWDI 301
>gi|50742500|ref|XP_419654.1| PREDICTED: ras-related protein Rab-32 [Gallus gallus]
Length = 218
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 117/172 (68%), Gaps = 3/172 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+++ V+LQ+WDIA
Sbjct: 19 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVINWDSK--TLVRLQLWDIA 76
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G ++FD+T +FE+V +WKHDLDSK +L NG+ +P +LLA+
Sbjct: 77 GQERFGNMTRVYYKEAVGAFVVFDVTRGSTFEAVSKWKHDLDSKVLLPNGSPIPAVLLAN 136
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
KCD D +++++ C + F+ W E S+K+++ I+++ FLV+ I+ +
Sbjct: 137 KCDQKKDGSQNLSQMDQFCREGGFIGWFETSAKDNINIDEAARFLVENILAN 188
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+++ V+LQ+WDI
Sbjct: 19 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVINWDSK--TLVRLQLWDI 75
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+++
Sbjct: 16 EHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVIN 61
>gi|326915700|ref|XP_003204151.1| PREDICTED: ras-related protein Rab-32-like [Meleagris gallopavo]
Length = 218
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 117/172 (68%), Gaps = 3/172 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+++ V+LQ+WDIA
Sbjct: 19 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVINWDSK--TLVRLQLWDIA 76
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G ++FD+T +FE+V +WKHDLDSK +L NG+ +P +LLA+
Sbjct: 77 GQERFGNMTRVYYKEAVGAFVVFDVTRGSTFEAVSKWKHDLDSKVLLPNGSPIPAVLLAN 136
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
KCD D +++++ C + F+ W E S+K+++ I+++ FLV+ I+ +
Sbjct: 137 KCDQKKDGSQNLSQMDQFCREGGFIGWFETSAKDNINIDEAARFLVENILAN 188
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+++ V+LQ+WDI
Sbjct: 19 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVINWDSK--TLVRLQLWDI 75
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+++
Sbjct: 16 EHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVIN 61
>gi|225707160|gb|ACO09426.1| Ras-related protein Rab-7L1 [Osmerus mordax]
Length = 206
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 110/175 (62%), Gaps = 4/175 (2%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKF--LDNYKNTVGVDFSTKLLSHKKYGGRPVKL 294
Q T+ +LI GD VGK+SYV+ +V F YK TVGVDF+ K+L V+L
Sbjct: 4 QEHTHKVLIVGDKNVGKSSYVKRYVNGNFNYKQPYKMTVGVDFAVKVLQWSDT--ETVRL 61
Query: 295 QIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP 354
+WDIAGQ+ +I M+RVYY+ + GC++MFD+T SF QWK D+D+K +L NG +P
Sbjct: 62 HLWDIAGQESFISMTRVYYKGASGCVVMFDMTEPSSFLHARQWKQDVDTKAMLPNGDPIP 121
Query: 355 CLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
C+LLA+KCDL V +I+ F+ W+E S K++ I++ + FLV+ ++
Sbjct: 122 CILLANKCDLGMGCVSSEKIKEFSEANGFIGWMETSVKDNRNIQEPLRFLVENML 176
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKF--LDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
Q ++ +LI GD VGK+SYV+ +V F YK TVGVDF+ K+L V+L
Sbjct: 4 QEHTHKVLIVGDKNVGKSSYVKRYVNGNFNYKQPYKMTVGVDFAVKVLQWSDT--ETVRL 61
Query: 225 QIWDI 229
+WDI
Sbjct: 62 HLWDI 66
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKF--LDNYKNTVGVDFSTKLL 150
E K+L++GD VGK+SYV+ +V F YK TVGVDF+ K+L
Sbjct: 5 EHTHKVLIVGDKNVGKSSYVKRYVNGNFNYKQPYKMTVGVDFAVKVL 51
>gi|178056544|ref|NP_001116648.1| ras-related protein Rab-32 [Sus scrofa]
gi|122131882|sp|Q06AU5.1|RAB32_PIG RecName: Full=Ras-related protein Rab-32
gi|115394762|gb|ABI97175.1| RAB32 [Sus scrofa]
Length = 226
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 130/197 (65%), Gaps = 6/197 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 28 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 84
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G +++FD++ FE+V++WK+DLDSK L NG+ +P +LLA
Sbjct: 85 AGQERFGNMTRVYYKEAVGALVVFDISRGSPFEAVLKWKNDLDSKVHLPNGSPIPAVLLA 144
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
+KCD D ++++ C ++ F W E S+K+++ I+++ FLV+ I+ + + +
Sbjct: 145 NKCDQKKDSGQNPSQMDQFCKEHGFTGWFETSAKDNINIDEAARFLVENILANHQ-SFPS 203
Query: 419 VERKSSIRLSEETLRDD 435
E I+L EET++ +
Sbjct: 204 EENDGRIKLDEETMKKE 220
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 21 PETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 70
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 28 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 84
>gi|332027672|gb|EGI67740.1| Ras-related protein Rab-32 [Acromyrmex echinatior]
Length = 287
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 117/172 (68%), Gaps = 6/172 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+ + ++LQ+WDIA
Sbjct: 84 YKILVIGELGAGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDPHT--IIRLQLWDIA 141
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T + ++VV+WK DLDSK L +G+ +PC+LLA+
Sbjct: 142 GQERFGNMTRVYYKEAVGAFIVFDVTRSATLDAVVKWKQDLDSKVQLPDGSSIPCVLLAN 201
Query: 361 KCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCD ++ IN +++ C + NF W E S+KE++ IE++ FLV++I+
Sbjct: 202 KCD-QQKEGLINSPAKMDEYCKEKNFSGWFETSAKENINIEEAAKFLVNKIL 252
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+ + ++LQ+WDI
Sbjct: 84 YKILVIGELGAGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDPHT--IIRLQLWDI 140
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 80 ARELCKSNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKN 139
AR + KS S AS +G + E + KILVIG+ GKTS ++ +V F +Y+
Sbjct: 61 ARAVRKS---SNNASNLGVSEK---REHLYKILVIGELGAGKTSIIKRYVHQFFSQHYRA 114
Query: 140 TVGVDFSTKLLS 151
T+GVDF+ K+L+
Sbjct: 115 TIGVDFALKVLN 126
>gi|152012618|gb|AAI50366.1| LOC100003274 protein [Danio rerio]
Length = 202
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 114/175 (65%), Gaps = 7/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ GD VGKTS ++ +V F NY+ T+GVDF+ K+L+ + V+LQ+WDIA
Sbjct: 2 YKILVIGDLGVGKTSIIKRYVHQNFSPNYRATIGVDFALKVLNLDQ---ETVRLQLWDIA 58
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK DLD+K L NG + +LLA+
Sbjct: 59 GQERFGNMTRVYYREAMGAFIVFDVTRPSTFEAVTKWKEDLDAKLSLSNGKQVAAVLLAN 118
Query: 361 KCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCD R V N ++E C + F+ W E S+KE++ I+++ + LV II ++
Sbjct: 119 KCD-QGRDVLTNNGIKMEQFCQENGFVGWFETSAKENINIDEAAHCLVKHIIANE 172
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ GD VGKTS ++ +V F NY+ T+GVDF+ K+L+ + V+LQ+WDI
Sbjct: 2 YKILVIGDLGVGKTSIIKRYVHQNFSPNYRATIGVDFALKVLNLDQ---ETVRLQLWDI 57
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
KILVIGD VGKTS ++ +V F NY+ T+GVDF+ K+L+
Sbjct: 3 KILVIGDLGVGKTSIIKRYVHQNFSPNYRATIGVDFALKVLN 44
>gi|357608836|gb|EHJ66182.1| Rab-related protein [Danaus plexippus]
Length = 629
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 118/177 (66%), Gaps = 6/177 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+ ++LQ+WDIA
Sbjct: 422 YKILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWD--ANTIIRLQLWDIA 479
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD++ +F++VV+WK+DLD+K L +G+ +PC+LLA+
Sbjct: 480 GQERFGNMTRVYYKEAVGAFIVFDVSRVATFDAVVKWKNDLDTKVQLPDGSPIPCILLAN 539
Query: 361 KCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD + +N ++E C + F W E S+KE++ IE++ LV++I+ + ++
Sbjct: 540 KCDQQKEGI-VNSPGKMEEYCREKGFAGWFETSAKENINIEEAARSLVNKILLNDKL 595
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+ ++LQ+WDI
Sbjct: 422 YKILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWD--ANTIIRLQLWDI 478
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILVIG+ GKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 419 EHLYKILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLN 464
>gi|17933630|ref|NP_525109.1| lightoid, isoform B [Drosophila melanogaster]
gi|7303926|gb|AAF58970.1| lightoid, isoform B [Drosophila melanogaster]
Length = 686
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 114/176 (64%), Gaps = 4/176 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L V+LQ+WDIA
Sbjct: 484 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLQWD--ANTIVRLQLWDIA 541
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +F+ V +WK DLDSK L +G+ +PC+LLA+
Sbjct: 542 GQERFGNMTRVYYKEAVGAFIVFDVTRSGTFDCVSKWKEDLDSKVQLPDGSPIPCILLAN 601
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD + + + +++ + F W E S+KE++ I+++ LV++I+ + ++
Sbjct: 602 KCDQEKQGIITQPEKMDEYVRENGFAGWFETSAKENINIDEAARALVNKILINDKL 657
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KILVIG+ GKTS+++ +V F NY+ T+GVDF+ K+L
Sbjct: 481 EHLYKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVL 525
>gi|189529263|ref|XP_001342875.2| PREDICTED: ras-related protein Rab-38 [Danio rerio]
Length = 211
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 114/175 (65%), Gaps = 7/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ GD VGKTS ++ +V F NY+ T+GVDF+ K+L+ + V+LQ+WDIA
Sbjct: 11 YKILVIGDLGVGKTSIIKRYVHQNFSPNYRATIGVDFALKVLNLDQ---ETVRLQLWDIA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK DLD+K L NG + +LLA+
Sbjct: 68 GQERFGNMTRVYYREAMGAFIVFDVTRPSTFEAVTKWKEDLDAKLSLSNGKQVAAVLLAN 127
Query: 361 KCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCD R V N ++E C + F+ W E S+KE++ I+++ + LV II ++
Sbjct: 128 KCD-QGRDVLTNNGIKMEQFCQENGFVGWFETSAKENINIDEAAHCLVKHIIANE 181
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ GD VGKTS ++ +V F NY+ T+GVDF+ K+L+ + V+LQ+WDI
Sbjct: 11 YKILVIGDLGVGKTSIIKRYVHQNFSPNYRATIGVDFALKVLNLDQ---ETVRLQLWDI 66
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILVIGD VGKTS ++ +V F NY+ T+GVDF+ K+L+
Sbjct: 8 EHLYKILVIGDLGVGKTSIIKRYVHQNFSPNYRATIGVDFALKVLN 53
>gi|327261967|ref|XP_003215798.1| PREDICTED: ras-related protein Rab-32-like [Anolis carolinensis]
Length = 235
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 124/195 (63%), Gaps = 5/195 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L + R V+LQ+WDI
Sbjct: 36 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLP---WDSRTLVRLQLWDI 92
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD+T +FE+V +WKHDLDSK +L NG+ +P +LLA
Sbjct: 93 AGQERFGNMTRVYYKEAVGAFVVFDVTRGSTFEAVSKWKHDLDSKVLLPNGSPIPAVLLA 152
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
+KCD D ++++ C F+ W E S+K+++ I+++ FLV+ I+ + +
Sbjct: 153 NKCDQKKDSGPNASQMDQFCKDGGFVGWFETSAKDNINIDEAARFLVENILANLKAFPNE 212
Query: 419 VERKSSIRLSEETLR 433
++L +TL+
Sbjct: 213 ENDVGKLKLDSDTLK 227
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L + R V+LQ+WDI
Sbjct: 36 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLP---WDSRTLVRLQLWDI 92
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 33 EHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVL 77
>gi|431904249|gb|ELK09646.1| Ras-related protein Rab-32 [Pteropus alecto]
Length = 215
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 125/194 (64%), Gaps = 5/194 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 16 FNVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 72
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +FE+V++WK DLDSK L NG +P +LLA
Sbjct: 73 AGQERFGNMTRVYYKEAVGAFVVFDISRGSTFEAVLKWKSDLDSKVHLPNGGPIPVVLLA 132
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
+KCD D +++E C ++ F W E S+K+++ I+++ FLV+ I+ + +
Sbjct: 133 NKCDQKKDGGQNPSQMEQFCKEHGFTGWFETSAKDNINIDEAARFLVENILANHQSFPNE 192
Query: 419 VERKSSIRLSEETL 432
SI+L +ETL
Sbjct: 193 DIDADSIKLEQETL 206
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 16 FNVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 72
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 16 FNVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 58
>gi|89258439|gb|ABD65443.1| Rab32 [Suberites domuncula]
Length = 212
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 111/171 (64%), Gaps = 4/171 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ GD GKTS ++ +V F +Y+ T+GVDF+ K+L+ ++LQ+WDIA
Sbjct: 13 YKILVIGDLGTGKTSIIKRYVHQFFSPHYRATIGVDFALKVLNWDN--NTTIRLQLWDIA 70
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G ++FD+T +FE+V WK DLDSK +L NG +P +LLA+
Sbjct: 71 GQERFGNMTRVYYKEAVGAFVVFDVTRLSTFEAVQMWKADLDSKVLLPNGKPIPAVLLAN 130
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL +N+++ C NF +W E S+KE++ I+++ LV +I+
Sbjct: 131 KCDLASEGFLGNVNQLDEYCRDKNFHAWFETSAKENIGIDEAARSLVAKIL 181
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
Q Y IL+ GD GKTS ++ +V F +Y+ T+GVDF+ K+L+ ++LQ+
Sbjct: 9 QEHLYKILVIGDLGTGKTSIIKRYVHQFFSPHYRATIGVDFALKVLNWDN--NTTIRLQL 66
Query: 227 WDI 229
WDI
Sbjct: 67 WDI 69
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILVIGD GKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 10 EHLYKILVIGDLGTGKTSIIKRYVHQFFSPHYRATIGVDFALKVLN 55
>gi|326427102|gb|EGD72672.1| hypothetical protein PTSG_04403 [Salpingoeca sp. ATCC 50818]
Length = 201
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 111/168 (66%), Gaps = 2/168 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +++ GD VGKTS + + F + YK T+GVDF+ KL+ K G + V LQ+WDIA
Sbjct: 11 YKVIVIGDGAVGKTSIISRYALGTFDEGYKKTLGVDFALKLVERK--GKQDVYLQLWDIA 68
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQD++ ++RVY++++ C+ +FDLT R++FE+V +W ++++K +P +LLA+
Sbjct: 69 GQDQFSSLTRVYFRHASACVTVFDLTARQTFENVKKWMDEVEAKVNTSETGPVPAILLAN 128
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
KCDL +V EIE + +YNF++W + S+K++ I+ +M LVD I
Sbjct: 129 KCDLKPHEVSDAEIEEMKERYNFVAWFKTSAKDNTNIDKAMATLVDHI 176
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +++ GD VGKTS + + F + YK T+GVDF+ KL+ K G + V LQ+WDI
Sbjct: 11 YKVIVIGDGAVGKTSIISRYALGTFDEGYKKTLGVDFALKLVERK--GKQDVYLQLWDI 67
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 153
K++VIGD VGKTS + + F + YK T+GVDF+ KL+ K
Sbjct: 12 KVIVIGDGAVGKTSIISRYALGTFDEGYKKTLGVDFALKLVERK 55
>gi|410916645|ref|XP_003971797.1| PREDICTED: ras-related protein Rab-32-like [Takifugu rubripes]
Length = 213
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 129/198 (65%), Gaps = 13/198 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+++ V+LQ+WDIA
Sbjct: 14 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVINWDS--KTLVRLQLWDIA 71
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G ++FD+T +FE+V +WKHDLDSK L NG+ +P +LLA+
Sbjct: 72 GQERFGNMTRVYYKEAVGAFVVFDVTRGSTFEAVSKWKHDLDSKVKLANGSPIPSVLLAN 131
Query: 361 KCDLPDRQVEINE---IEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR---M 414
KCD ++ N +++ C + F+ W E S+K+++ ++++ +FLVD I+ + +
Sbjct: 132 KCD--QKKESFNSKVLMDSFCKETGFLGWFETSAKDNINVDEAAHFLVDNILANDKGLPY 189
Query: 415 EEEAVERKSSIRLSEETL 432
EE +R I+L +ET+
Sbjct: 190 EESNGDR---IKLDQETV 204
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 161 GTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR 220
G+ S + + +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+++
Sbjct: 4 GSVSECKEYLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVINWDS--KT 61
Query: 221 PVKLQIWDI 229
V+LQ+WDI
Sbjct: 62 LVRLQLWDI 70
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+++
Sbjct: 11 EYLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVIN 56
>gi|427778911|gb|JAA54907.1| Putative rab35 member ras oncoprotein family [Rhipicephalus
pulchellus]
Length = 257
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 134/247 (54%), Gaps = 21/247 (8%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIY 230
+ +LI GDS VGK+S + F N F NY T+GVDF + L + G VKLQIWD
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFTGNYITTIGVDFKIRTL---EVDGERVKLQIWDTA 65
Query: 231 CTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR 290
GDS VGK+S + F N F NY T+GVDF + L + G
Sbjct: 66 GQER----------FRGDSGVGKSSLLLRFADNTFTGNYITTIGVDFKIRTL---EVDGE 112
Query: 291 PVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNG 350
VKLQIWD AGQ+R+ ++ YY+ + G ++++D+TN +SF +V +W H+++ C + N
Sbjct: 113 RVKLQIWDTAGQERFRTITSTYYRGTHGVVVVYDVTNGESFANVKRWLHEIEQNCDVVN- 171
Query: 351 AMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
+L+ +K D P R+V + E + E S+KE++ +E+ N + ++
Sbjct: 172 ----RILVGNKNDDPSRKVVLTEDAQRFADQMGIQLFETSAKENINVEEMFNAITRMVLK 227
Query: 411 SKRMEEE 417
SK+ ++E
Sbjct: 228 SKKEQKE 234
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 63/121 (52%), Gaps = 8/121 (6%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ 167
+ K+L+IGDS VGK+S + F N F NY T+GVDF + L G R I
Sbjct: 8 LFKLLIIGDSGVGKSSLLLRFADNTFTGNYITTIGVDFKIRTLEVD--GERVK---LQIW 62
Query: 168 TPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 227
+ GDS VGK+S + F N F NY T+GVDF + L + G VKLQIW
Sbjct: 63 DTAGQERFRGDSGVGKSSLLLRFADNTFTGNYITTIGVDFKIRTL---EVDGERVKLQIW 119
Query: 228 D 228
D
Sbjct: 120 D 120
>gi|290983359|ref|XP_002674396.1| rab family small GTPase [Naegleria gruberi]
gi|284087986|gb|EFC41652.1| rab family small GTPase [Naegleria gruberi]
Length = 221
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 128/228 (56%), Gaps = 17/228 (7%)
Query: 232 TLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 291
T +Q Y IL+ GD GKTS ++ +V N F + YK+T+GVDF+ K+L+
Sbjct: 4 TGGEVQEYLYKILVVGDIGTGKTSIIKRYVHNIFSNTYKSTIGVDFALKVLNWDD--NII 61
Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA 351
++LQ+WDIAGQ+R+ M+RVYY+ + G +++D+T +FE+V +WK D++ K L +
Sbjct: 62 IRLQLWDIAGQERFGSMTRVYYKEAVGAFVVYDITRPPTFEAVQKWKSDIEHKVFLPDER 121
Query: 352 MLPCLLLASKCDLPDR-QVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
+PC+LLA+KCDLP E++ C + F+ W E S+K+ I ++ NFLV +I
Sbjct: 122 PIPCVLLANKCDLPSAVSKSKEEMDQYCQENGFIGWFETSAKDDKNINEAANFLVKKI-- 179
Query: 411 SKRMEEEAVERKSSIRLSEETLRDD------QPKKLVPADKVSTYCWC 452
+E A K EE RDD +P+ P S C C
Sbjct: 180 ---LENHAEMNKQQ---GEEQPRDDVVQFSEKPQSQNPKPSSSGGCQC 221
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 162 TFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 221
T +Q Y IL+ GD GKTS ++ +V N F + YK+T+GVDF+ K+L+
Sbjct: 4 TGGEVQEYLYKILVVGDIGTGKTSIIKRYVHNIFSNTYKSTIGVDFALKVLNWDD--NII 61
Query: 222 VKLQIWDI 229
++LQ+WDI
Sbjct: 62 IRLQLWDI 69
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILV+GD GKTS ++ +V N F + YK+T+GVDF+ K+L+
Sbjct: 10 EYLYKILVVGDIGTGKTSIIKRYVHNIFSNTYKSTIGVDFALKVLN 55
>gi|417408732|gb|JAA50904.1| Putative gtp-binding protein-like ras superfamily, partial
[Desmodus rotundus]
Length = 215
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 135/215 (62%), Gaps = 20/215 (9%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 16 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 72
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +FE+V++WK+DLDSK L +G +P +LLA
Sbjct: 73 AGQERFGNMTRVYYKEAVGAFVVFDISRGSTFEAVLKWKNDLDSKVHLPSGGPIPAVLLA 132
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM---E 415
+KCD D ++I+ C ++ F W E S+K+++ I+++ FLV+ I+ +++ E
Sbjct: 133 NKCDQKKDGGQNPSQIDQFCKEHGFTGWFETSAKDNINIDEAARFLVENILMNQQSFPNE 192
Query: 416 EEAVERKSSIRLSEETLRDDQPKKLVPADKVSTYC 450
E V++ I+L +E L PA+ S C
Sbjct: 193 ENDVDK---IKLEQEAL---------PAESKSQCC 215
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 9 PETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 58
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 16 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 72
>gi|449497012|ref|XP_004176408.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-32
[Taeniopygia guttata]
gi|449277837|gb|EMC85859.1| Ras-related protein Rab-32 [Columba livia]
Length = 218
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 116/172 (67%), Gaps = 3/172 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+++ V+LQ+WDIA
Sbjct: 19 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVINWDSK--TLVRLQLWDIA 76
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G ++FD+T +FE+V +WKHDLDSK +L NG+ +P +LLA+
Sbjct: 77 GQERFGNMTRVYYKEAVGAFVVFDVTRGSTFEAVSKWKHDLDSKVLLPNGSPIPAVLLAN 136
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
KCD D ++++ C + F+ W E S+K+++ I+++ FLV+ I+ +
Sbjct: 137 KCDQKKDGSQNPSQMDQFCREGGFVGWFETSAKDNINIDEAARFLVENILAN 188
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 156 GGRPYGTFSP-IQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 214
GG G+ P + + +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+++
Sbjct: 3 GGEGAGSGVPECREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVINW 62
Query: 215 KKYGGRPVKLQIWDI 229
V+LQ+WDI
Sbjct: 63 DSK--TLVRLQLWDI 75
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+++
Sbjct: 12 PECREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVIN 61
>gi|195581818|ref|XP_002080727.1| GD10095 [Drosophila simulans]
gi|194192736|gb|EDX06312.1| GD10095 [Drosophila simulans]
Length = 382
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 114/176 (64%), Gaps = 4/176 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L V+LQ+WDIA
Sbjct: 180 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLQWD--ANTIVRLQLWDIA 237
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +F+ V +WK DLDSK L +G+ +PC+LLA+
Sbjct: 238 GQERFGNMTRVYYKEAVGAFIVFDVTRSGTFDCVSKWKEDLDSKVQLPDGSPIPCILLAN 297
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD + + + +++ + F W E S+KE++ I+++ LV++I+ + ++
Sbjct: 298 KCDQEKQGIITQPEKMDEYVRENGFAGWFETSAKENINIDEAARALVNKILINDKL 353
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KILVIG+ GKTS+++ +V F NY+ T+GVDF+ K+L
Sbjct: 177 EHLYKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVL 221
>gi|301614231|ref|XP_002936591.1| PREDICTED: ras-related protein Rab-38-like [Xenopus (Silurana)
tropicalis]
Length = 212
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 117/182 (64%), Gaps = 4/182 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+LS V+LQ+WDIA
Sbjct: 10 YKILVIGDLGVGKTSIIKRYVHQNFSPHYRATIGVDFALKVLSWD--SDTVVRLQLWDIA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK DLDSK L NG + +LLA+
Sbjct: 68 GQERFGNMTRVYYREAVGAFIVFDVTRPATFEAVAKWKEDLDSKLTLANGVPVSAVLLAN 127
Query: 361 KCDL--PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
KCD + + +++ C ++ F++W E S+KE++ I+++ LV II S+ + +
Sbjct: 128 KCDQGKDNFKNHFTKMDQFCKEHGFVAWYETSAKENINIDEASRCLVSHIIASESDQMQP 187
Query: 419 VE 420
VE
Sbjct: 188 VE 189
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+LS V+LQ+WDI
Sbjct: 10 YKILVIGDLGVGKTSIIKRYVHQNFSPHYRATIGVDFALKVLSWD--SDTVVRLQLWDI 66
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+LS
Sbjct: 7 EHLYKILVIGDLGVGKTSIIKRYVHQNFSPHYRATIGVDFALKVLS 52
>gi|346472783|gb|AEO36236.1| hypothetical protein [Amblyomma maculatum]
Length = 212
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 123/203 (60%), Gaps = 5/203 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K++ ++LQ+WDIA
Sbjct: 10 YKILVIGELGTGKTSIIKRYVHQFFSHHYRATIGVDFALKVVEWDD--NTLIRLQLWDIA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T ++FE+V +WK DLDSK L G +PC+LLA+
Sbjct: 68 GQERFGNMTRVYYKEAVGAFIVFDVTRSQTFEAVRKWKMDLDSKVQLPEGTPIPCVLLAN 127
Query: 361 KCDLPDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
KCD+ + N E+ C + NF W S+KE+L IE++ FL+ +I+ ++
Sbjct: 128 KCDMSKEGIVNNAAEMNEFCKENNFAGWFLTSAKENLNIEEAARFLITQILHHEKALSLG 187
Query: 419 VERKSSIRLSEET-LRDDQPKKL 440
+ S+ LS T + P+++
Sbjct: 188 DSGQGSVPLSGSTPMAQSVPRRM 210
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K++ ++LQ+WDI
Sbjct: 10 YKILVIGELGTGKTSIIKRYVHQFFSHHYRATIGVDFALKVVEWDD--NTLIRLQLWDI 66
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KILVIG+ GKTS ++ +V F +Y+ T+GVDF+ K++
Sbjct: 7 EHLYKILVIGELGTGKTSIIKRYVHQFFSHHYRATIGVDFALKVV 51
>gi|340379925|ref|XP_003388475.1| PREDICTED: ras-related protein Rab-32-like [Amphimedon
queenslandica]
Length = 210
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 118/193 (61%), Gaps = 4/193 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ GD GKTS ++ +V F +Y+ T+GVDF+ K+L+ ++LQ+WDIA
Sbjct: 12 YKVLVIGDLGTGKTSIIKRYVHQFFSPHYRATIGVDFALKVLNWDN--NTTIRLQLWDIA 69
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G ++FD+T +FE+V WK DLD+K +L NG +P +LLA+
Sbjct: 70 GQERFGNMTRVYYKEAVGAFVVFDMTRLSTFEAVTMWKSDLDNKVLLPNGKPIPAVLLAN 129
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
KCDL + +++ C + F W E S+KE++ I+++ LV +I+ + E+
Sbjct: 130 KCDLASEGFLGNVGQLDDYCKEKGFAGWFETSAKENIGIDEAARCLVAKILENDESIEQQ 189
Query: 419 VERKSSIRLSEET 431
K + + +ET
Sbjct: 190 APDKDVLHVEQET 202
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
Q Y +L+ GD GKTS ++ +V F +Y+ T+GVDF+ K+L+ ++LQ+
Sbjct: 8 QEHLYKVLVIGDLGTGKTSIIKRYVHQFFSPHYRATIGVDFALKVLNWDN--NTTIRLQL 65
Query: 227 WDI 229
WDI
Sbjct: 66 WDI 68
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIGD GKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 9 EHLYKVLVIGDLGTGKTSIIKRYVHQFFSPHYRATIGVDFALKVLN 54
>gi|45551040|ref|NP_724768.2| lightoid, isoform A [Drosophila melanogaster]
gi|45445639|gb|AAG22295.2| lightoid, isoform A [Drosophila melanogaster]
Length = 385
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 114/176 (64%), Gaps = 4/176 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L V+LQ+WDIA
Sbjct: 183 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLQWD--ANTIVRLQLWDIA 240
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +F+ V +WK DLDSK L +G+ +PC+LLA+
Sbjct: 241 GQERFGNMTRVYYKEAVGAFIVFDVTRSGTFDCVSKWKEDLDSKVQLPDGSPIPCILLAN 300
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD + + + +++ + F W E S+KE++ I+++ LV++I+ + ++
Sbjct: 301 KCDQEKQGIITQPEKMDEYVRENGFAGWFETSAKENINIDEAARALVNKILINDKL 356
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KILVIG+ GKTS+++ +V F NY+ T+GVDF+ K+L
Sbjct: 180 EHLYKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVL 224
>gi|195332749|ref|XP_002033056.1| GM20620 [Drosophila sechellia]
gi|194125026|gb|EDW47069.1| GM20620 [Drosophila sechellia]
Length = 382
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 114/176 (64%), Gaps = 4/176 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L V+LQ+WDIA
Sbjct: 180 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLQWD--ANTIVRLQLWDIA 237
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +F+ V +WK DLDSK L +G+ +PC+LLA+
Sbjct: 238 GQERFGNMTRVYYKEAVGAFIVFDVTRSGTFDCVSKWKEDLDSKVQLPDGSPIPCILLAN 297
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD + + + +++ + F W E S+KE++ I+++ LV++I+ + ++
Sbjct: 298 KCDQEKQGIITQPEKMDEYVRENGFAGWFETSAKENINIDEAARALVNKILINDKL 353
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KILVIG+ GKTS+++ +V F NY+ T+GVDF+ K+L
Sbjct: 177 EHLYKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVL 221
>gi|440803944|gb|ELR24827.1| Rasrelated protein Rab-32, putative [Acanthamoeba castellanii str.
Neff]
Length = 216
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 110/169 (65%), Gaps = 4/169 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ GD GKT+ ++ V+N+F ++YK T+GVDF+ K + + LQ+WDIA
Sbjct: 19 YKILVVGDIGTGKTAIIRRCVENQFSESYKTTIGVDFALKTIQRSN---ATIHLQLWDIA 75
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++RVYY+ + G ++FDLT SFE+V +WK D+D+ L NG LP +LLA+
Sbjct: 76 GQERYGNLTRVYYKEAVGAFVVFDLTRNSSFEAVKRWKEDIDN-VRLPNGDPLPVVLLAN 134
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL + + C + F++W S+KE++ I++++NFLV+ II
Sbjct: 135 KCDLVKTPLSEEVMNDYCKENGFLAWFATSAKENINIDEAVNFLVENII 183
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 150 LSHKKYGGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 209
+SH G G P Y IL+ GD GKT+ ++ V+N+F ++YK T+GVDF+
Sbjct: 1 MSHGHGGKAAEG---PATEYLYKILVVGDIGTGKTAIIRRCVENQFSESYKTTIGVDFAL 57
Query: 210 KLLSHKKYGGRPVKLQIWDI 229
K + + LQ+WDI
Sbjct: 58 KTIQRSN---ATIHLQLWDI 74
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 33/45 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KILV+GD GKT+ ++ V+N+F ++YK T+GVDF+ K +
Sbjct: 16 EYLYKILVVGDIGTGKTAIIRRCVENQFSESYKTTIGVDFALKTI 60
>gi|329664240|ref|NP_001192879.1| ras-related protein Rab-32 [Bos taurus]
gi|296483942|tpg|DAA26057.1| TPA: RAB32, member RAS oncogene family-like [Bos taurus]
Length = 225
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 128/197 (64%), Gaps = 6/197 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 27 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 83
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G I+FD++ +F++V++WK DLDSK L NG+ +P +LLA
Sbjct: 84 AGQERFGNMTRVYYKEAVGAFIVFDISRGSTFDAVLKWKSDLDSKVHLPNGSPIPAVLLA 143
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
+KCD D ++++ C ++ F W E S+K+++ I+++ FLV+ I+ + +
Sbjct: 144 NKCDQKKDSGQTPSQMDQFCKEHGFTGWFETSAKDNVNIDEAARFLVENILANHQSFPNE 203
Query: 419 VERKSSIRLSEETLRDD 435
E I+L EET++ +
Sbjct: 204 -ENDGRIKLEEETVKKE 219
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 27 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 83
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 34/47 (72%)
Query: 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 23 SEHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 69
>gi|194227608|ref|XP_001496437.2| PREDICTED: hypothetical protein LOC100065954 [Equus caballus]
Length = 430
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 124/193 (64%), Gaps = 5/193 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 231 FKMLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDNRTLVRLQLWDI 287
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +FE+V++WK DLDSK L NG+ +P +LLA
Sbjct: 288 AGQERFGNMTRVYYKEAVGAFVVFDISRGSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLA 347
Query: 360 SKCDLPDRQVE-INEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
+KCD + +++ C ++ F W E S+K+++ I+++ FLV+ I+ + +
Sbjct: 348 NKCDQKKEGGQNPPQMDQFCKEHGFTGWFETSAKDNINIDEAARFLVENILENYQSFPNE 407
Query: 419 VERKSSIRLSEET 431
S I+L +ET
Sbjct: 408 ENDGSKIKLDQET 420
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 224 PETREHLFKMLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 273
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 231 FKMLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDNRTLVRLQLWDI 287
>gi|195474974|ref|XP_002089761.1| GE22467 [Drosophila yakuba]
gi|194175862|gb|EDW89473.1| GE22467 [Drosophila yakuba]
Length = 560
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 114/176 (64%), Gaps = 4/176 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L V+LQ+WDIA
Sbjct: 358 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLQWD--ANTIVRLQLWDIA 415
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +F+ V +WK DLDSK L +G+ +PC+LLA+
Sbjct: 416 GQERFGNMTRVYYKEAVGAFIVFDVTRSGTFDCVSKWKEDLDSKVQLPDGSPIPCILLAN 475
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD + + + +++ + F W E S+KE++ I+++ LV++I+ + ++
Sbjct: 476 KCDQEKQGIITQPEKMDEYVRENGFAGWFETSAKENINIDEAARALVNKILINDKL 531
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KILVIG+ GKTS+++ +V F NY+ T+GVDF+ K+L
Sbjct: 355 EHLYKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVL 399
>gi|328871008|gb|EGG19380.1| Rab GTPase [Dictyostelium fasciculatum]
Length = 215
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 112/176 (63%), Gaps = 9/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ GD GKTS ++ FV N F +YK+T+GVDF+ K+L+ V+LQ+WDIA
Sbjct: 14 YKILVVGDIGTGKTSIIKRFVHNIFSMHYKSTIGVDFALKVLNWDPR--TEVRLQLWDIA 71
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM---LPCLL 357
GQ+R+ M+RVYY+ + G +I FD+T +FE+V +WK D+DSK + GA +P +L
Sbjct: 72 GQERFGSMTRVYYKEAVGAMITFDVTRASTFEAVSKWKADIDSKVTI--GAEEKPIPVVL 129
Query: 358 LASKCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
LA+KCDL NE++ C F+ W E S+KE+L IE + FLV+ I+ S
Sbjct: 130 LANKCDLGKEGFIKTANEMDKYCKDNGFIGWFETSAKENLNIEKAARFLVEHILKS 185
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ GD GKTS ++ FV N F +YK+T+GVDF+ K+L+ V+LQ+WDI
Sbjct: 14 YKILVVGDIGTGKTSIIKRFVHNIFSMHYKSTIGVDFALKVLNWDPR--TEVRLQLWDI 70
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILV+GD GKTS ++ FV N F +YK+T+GVDF+ K+L+
Sbjct: 11 EYLYKILVVGDIGTGKTSIIKRFVHNIFSMHYKSTIGVDFALKVLN 56
>gi|395535108|ref|XP_003769574.1| PREDICTED: ras-related protein Rab-32 [Sarcophilus harrisii]
Length = 225
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 127/196 (64%), Gaps = 8/196 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ V+LQ+WDIA
Sbjct: 27 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSK--TLVRLQLWDIA 84
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G ++FD++ +FE+V++WK+DLDSK L NG +P +LLA+
Sbjct: 85 GQERFGNMTRVYYKEAVGAFVVFDISRESTFEAVLKWKNDLDSKVQLANGIPIPTVLLAN 144
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM--EEE 417
KCD D ++++ C + F W E S+K+++ I++++ FLV+ I+ + + E+
Sbjct: 145 KCDQNKDNSHSPSQMDQFCKENGFTGWFETSAKDNINIDEAVRFLVENILANYKNFPNED 204
Query: 418 AVERKSSIRLSEETLR 433
V++ I+L TLR
Sbjct: 205 DVDK---IKLDHTTLR 217
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 86 SNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
S P P A+ P E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF
Sbjct: 6 SGEPGPGAAAGIVVPETQ--EHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDF 63
Query: 146 STKLLS 151
+ K+L+
Sbjct: 64 ALKVLN 69
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 157 GRPYGTFSP-IQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 215
G G P Q + +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 12 GAAAGIVVPETQEHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWD 71
Query: 216 KYGGRPVKLQIWDI 229
V+LQ+WDI
Sbjct: 72 S--KTLVRLQLWDI 83
>gi|440803967|gb|ELR24850.1| Rab32 protein, putative [Acanthamoeba castellanii str. Neff]
Length = 216
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 118/190 (62%), Gaps = 6/190 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ GD GKT+ ++ V+ F DNYK T+GVDF+ K + K+G V LQ+WDI
Sbjct: 18 FKVLVVGDMATGKTAIIRRCVEGAFSDNYKTTIGVDFALKTI---KWGSNTLVYLQLWDI 74
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++RVYY+ + ++FDLT SFESV +WK D+D+K L NG LP +LLA
Sbjct: 75 AGQERYGNLTRVYYKEAVAAFVVFDLTRNSSFESVKRWKDDIDNKVRLPNGDPLPVILLA 134
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
+KCD+ + ++ C + F+SW S+KE+ I++S+ +V+ +I K+ E+ A
Sbjct: 135 NKCDMVKTALNEEVMDQYCKENGFISWFATSAKENTNIDESVACIVNHVI--KKDEQGAK 192
Query: 420 ERKSSIRLSE 429
+ L+E
Sbjct: 193 GDAEAFALNE 202
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ GD GKT+ ++ V+ F DNYK T+GVDF+ K + K+G V LQ+WDI
Sbjct: 18 FKVLVVGDMATGKTAIIRRCVEGAFSDNYKTTIGVDFALKTI---KWGSNTLVYLQLWDI 74
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LV+GD GKT+ ++ V+ F DNYK T+GVDF+ K +
Sbjct: 15 EFLFKVLVVGDMATGKTAIIRRCVEGAFSDNYKTTIGVDFALKTI 59
>gi|195456043|ref|XP_002074978.1| GK22864 [Drosophila willistoni]
gi|194171063|gb|EDW85964.1| GK22864 [Drosophila willistoni]
Length = 685
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 114/176 (64%), Gaps = 4/176 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L V+LQ+WDIA
Sbjct: 482 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLHWD--ANTIVRLQLWDIA 539
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +F+ V +WK DLDSK L +G+ +PC+LLA+
Sbjct: 540 GQERFGNMTRVYYKEAVGAFIVFDVTRSGTFDCVSKWKEDLDSKVQLPDGSAIPCILLAN 599
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD + + + +++ + F W E S+KE++ I+++ LV++I+ + ++
Sbjct: 600 KCDQEKQGIVTQPEKMDEYVRENGFAGWFETSAKENINIDEAARALVNKILINDKL 655
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KILVIG+ GKTS+++ +V F NY+ T+GVDF+ K+L
Sbjct: 479 EHLYKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVL 523
>gi|157820973|ref|NP_001102372.1| ras-related protein Rab-32 [Rattus norvegicus]
gi|149039546|gb|EDL93708.1| similar to RAB32 (predicted), isoform CRA_a [Rattus norvegicus]
Length = 223
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 124/192 (64%), Gaps = 5/192 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F NY+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 24 FKVLVIGELGVGKTSIIKRYVHQLFSQNYRATIGVDFALKVLN---WDSRTLVRLQLWDI 80
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +F++V++WK+DLDSK L NG+ +P +LLA
Sbjct: 81 AGQERFGNMTRVYYKEALGAFVVFDISRSSTFDAVLKWKNDLDSKVHLPNGSPIPAVLLA 140
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
+KCD D +++ C + F+ W E S+K+++ I+++ FLV+ ++ +++
Sbjct: 141 NKCDQKKDSSQSPSQMNQFCKDHGFIGWFETSAKDNINIDEATRFLVENMLANQQSFPRE 200
Query: 419 VERKSSIRLSEE 430
I+L EE
Sbjct: 201 EIDMDKIKLVEE 212
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P E + K+LVIG+ VGKTS ++ +V F NY+ T+GVDF+ K+L+
Sbjct: 17 PETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQNYRATIGVDFALKVLN 66
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F NY+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 24 FKVLVIGELGVGKTSIIKRYVHQLFSQNYRATIGVDFALKVLN---WDSRTLVRLQLWDI 80
>gi|312377455|gb|EFR24284.1| hypothetical protein AND_11247 [Anopheles darlingi]
Length = 218
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 116/176 (65%), Gaps = 4/176 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L+ + ++LQ+WDIA
Sbjct: 13 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLNWDQ--NTIIRLQLWDIA 70
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +F++V++WK DLDSK L +G +PC+LLA+
Sbjct: 71 GQERFGNMTRVYYKEAVGAFIVFDVTRSATFDAVIKWKQDLDSKVQLPDGKPIPCILLAN 130
Query: 361 KCDLPDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
K D + + +++ ++ F W E S+KE++ IE++ LV++I+ + +M
Sbjct: 131 KSDQQKQGIVTTPAKLDEYVKEHGFAGWFETSAKENVNIEEAAKSLVNKILMNDKM 186
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L+ + ++LQ+WDI
Sbjct: 13 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLNWDQ--NTIIRLQLWDI 69
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILVIG+ GKTS+++ +V F NY+ T+GVDF+ K+L+
Sbjct: 10 EHLYKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLN 55
>gi|25012172|gb|AAN71203.1| GH26660p, partial [Drosophila melanogaster]
Length = 306
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 114/176 (64%), Gaps = 4/176 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L V+LQ+WDIA
Sbjct: 104 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLQWD--ANTIVRLQLWDIA 161
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +F+ V +WK DLDSK L +G+ +PC+LLA+
Sbjct: 162 GQERFGNMTRVYYKEAVGAFIVFDVTRSGTFDCVSKWKEDLDSKVQLPDGSPIPCILLAN 221
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD + + + +++ + F W E S+KE++ I+++ LV++I+ + ++
Sbjct: 222 KCDQEKQGIITQPEKMDEYVRENGFAGWFETSAKENINIDEAARALVNKILINDKL 277
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KILVIG+ GKTS+++ +V F NY+ T+GVDF+ K+L
Sbjct: 101 EHLYKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVL 145
>gi|348675957|gb|EGZ15775.1| hypothetical protein PHYSODRAFT_561505 [Phytophthora sojae]
Length = 218
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 130/220 (59%), Gaps = 11/220 (5%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
++ Q +L+ GD+ GKTS ++ +V + F ++++ T+GVDF+ K ++ G V
Sbjct: 6 VNAAQDAVIKVLVLGDAATGKTSIIKRYVHDAFSEHHRTTIGVDFALKAVT---VNGTTV 62
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
+LQ+WDIAGQ+ + ++RVYY+++ G ++++D++ ++F+S+++WK ++DSK L NG
Sbjct: 63 RLQLWDIAGQEHFRALNRVYYKDALGALLVYDMSRPETFDSILKWKKEIDSKVELPNGKP 122
Query: 353 LPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
LP +L +KCDL + +V+ ++ C NF W + S+KE++ I+D+ LV I+
Sbjct: 123 LPVILCGNKCDLKE-EVDRGFLDEFCKTNNFTGWFDTSAKENIHIDDAAKALVTGIL--- 178
Query: 413 RMEEEAVERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
++ ERKS + +T R P + WC
Sbjct: 179 -EHQDIFERKSEAKKRNDTFR---PTSAANGGNANQSSWC 214
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 39/57 (68%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+L+ GD+ GKTS ++ +V + F ++++ T+GVDF+ K ++ G V+LQ+WDI
Sbjct: 16 VLVLGDAATGKTSIIKRYVHDAFSEHHRTTIGVDFALKAVT---VNGTTVRLQLWDI 69
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 35/46 (76%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ V+K+LV+GD+ GKTS ++ +V + F ++++ T+GVDF+ K ++
Sbjct: 11 DAVIKVLVLGDAATGKTSIIKRYVHDAFSEHHRTTIGVDFALKAVT 56
>gi|195119442|ref|XP_002004240.1| GI19816 [Drosophila mojavensis]
gi|193909308|gb|EDW08175.1| GI19816 [Drosophila mojavensis]
Length = 665
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 113/176 (64%), Gaps = 4/176 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L V+LQ+WDIA
Sbjct: 464 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLHWD--ANTIVRLQLWDIA 521
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +F+ V +WK DLDSK L +G+ +PC+LLA+
Sbjct: 522 GQERFGNMTRVYYKEAVGAFIVFDVTRSGTFDCVSKWKEDLDSKVQLPDGSPIPCILLAN 581
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD + + + ++ + F W E S+KE++ I+++ LV++I+ + ++
Sbjct: 582 KCDQEKQGIVTQPERMDEYVRENGFAGWFETSAKENINIDEAARALVNKILINDKL 637
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P E + KILVIG+ GKTS+++ +V F NY+ T+GVDF+ K+L
Sbjct: 455 PSGEKREHLYKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVL 505
>gi|291227653|ref|XP_002733795.1| PREDICTED: lightoid-like [Saccoglossus kowalevskii]
Length = 217
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 121/191 (63%), Gaps = 6/191 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ GD GKTS ++ +V F +Y+ T+GVDF+ K+++ ++LQ+WDIA
Sbjct: 12 YKVLVIGDLGTGKTSVIKRYVHQFFSQHYRATIGVDFALKVINWD--ADTLIRLQLWDIA 69
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG +P +LLA+
Sbjct: 70 GQERFGNMTRVYYKEAVGAFIVFDVTRASTFEAVQKWKNDLDSKVQLPNGQNIPVVLLAN 129
Query: 361 KCDLPDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM--EE 416
KCD + N +++ C + F+ W E S+KE++ I+++ FLV I+ + + E
Sbjct: 130 KCDQAKEGLVNNASQMDDYCKEKGFIGWFETSAKENINIDEAARFLVTAILANDKSMNHE 189
Query: 417 EAVERKSSIRL 427
+ + K ++RL
Sbjct: 190 DQHQDKDALRL 200
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ GD GKTS ++ +V F +Y+ T+GVDF+ K+++ ++LQ+WDI
Sbjct: 12 YKVLVIGDLGTGKTSVIKRYVHQFFSQHYRATIGVDFALKVINWD--ADTLIRLQLWDI 68
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIGD GKTS ++ +V F +Y+ T+GVDF+ K+++
Sbjct: 9 EHLYKVLVIGDLGTGKTSVIKRYVHQFFSQHYRATIGVDFALKVIN 54
>gi|195029497|ref|XP_001987609.1| GH19866 [Drosophila grimshawi]
gi|193903609|gb|EDW02476.1| GH19866 [Drosophila grimshawi]
Length = 664
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 113/176 (64%), Gaps = 4/176 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L V+LQ+WDIA
Sbjct: 462 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLHWDT--NTIVRLQLWDIA 519
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +F+ V +WK DLDSK L +G+ +PC+LLA+
Sbjct: 520 GQERFGNMTRVYYKEAVGAFIVFDVTRSGTFDCVSKWKEDLDSKVQLPDGSPIPCILLAN 579
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD + + + ++ + F W E S+KE++ I+++ LV++I+ + ++
Sbjct: 580 KCDQEKQGIVTQPERMDEYVRENGFAGWFETSAKENINIDEAARALVNKILINDKL 635
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P E + KILVIG+ GKTS+++ +V F NY+ T+GVDF+ K+L
Sbjct: 453 PSSEKREHLYKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVL 503
>gi|344264823|ref|XP_003404489.1| PREDICTED: ras-related protein Rab-32-like [Loxodonta africana]
Length = 225
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 123/193 (63%), Gaps = 3/193 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ V+LQ+WDIA
Sbjct: 26 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWD--SKTLVRLQLWDIA 83
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD++ +FE+V++WK+DLDSK L NG+ +P +LLA+
Sbjct: 84 GQERFGNMTRVYYKEALGAFIVFDISRSSTFEAVLKWKNDLDSKVHLPNGSPIPAVLLAN 143
Query: 361 KCDLPDRQVEI-NEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD + +++ C ++ F W E S+K+++ I+++ FLV+ I+ + +
Sbjct: 144 KCDQKKESGQSPPQMDQFCKEHGFSGWFETSAKDNINIDEAARFLVENILANHQNFPNEE 203
Query: 420 ERKSSIRLSEETL 432
I+L ++TL
Sbjct: 204 NDADKIKLDQDTL 216
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 19 PETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 68
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ V+LQ+WDI
Sbjct: 26 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWD--SKTLVRLQLWDI 82
>gi|74204808|dbj|BAE35466.1| unnamed protein product [Mus musculus]
Length = 223
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 129/195 (66%), Gaps = 11/195 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 24 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRALVRLQLWDI 80
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +F++V++WK+DLDSK L NG+ +P +LLA
Sbjct: 81 AGQERFGNMTRVYYKEALGAFVVFDISRSSTFDAVLKWKNDLDSKVHLPNGSPIPAVLLA 140
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR---ME 415
+KCD D ++++ C + F W E S+K+++ I+++ FLV+ ++ +++ E
Sbjct: 141 NKCDQKKDNSQSPSQMDQFCKDHGFTGWFETSAKDNINIDEATRFLVENMLANQQSFPSE 200
Query: 416 EEAVERKSSIRLSEE 430
E ++R I+L EE
Sbjct: 201 EIDLDR---IKLVEE 212
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 24 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRALVRLQLWDI 80
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 17 PETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 66
>gi|320167989|gb|EFW44888.1| small GTPase rabE [Capsaspora owczarzaki ATCC 30864]
Length = 210
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 117/188 (62%), Gaps = 4/188 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD GKTS ++ +V N F +YK T+GVDF+ K+++ + V+LQ+WDIA
Sbjct: 10 FKVLVVGDIGTGKTSIIKRYVHNIFSMHYKATIGVDFALKVINWEP--DTVVRLQLWDIA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + II+FD+T +FE+V +WK D+D+K L G +P +LLA+
Sbjct: 68 GQERFGNMTRVYYKEAVAAIIVFDVTRVSTFEAVQKWKFDIDAKVKLSTGEDIPVVLLAN 127
Query: 361 KCDLPDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
KCDL + N +++ C F W E S+KE+L I+ + FLV +I+ + + + A
Sbjct: 128 KCDLAKEGLVKNSAQMDKFCEDKGFAGWFETSAKENLNIDKACRFLVTKILENTQSNQPA 187
Query: 419 VERKSSIR 426
E IR
Sbjct: 188 PEENGIIR 195
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD GKTS ++ +V N F +YK T+GVDF+ K+++ + V+LQ+WDI
Sbjct: 10 FKVLVVGDIGTGKTSIIKRYVHNIFSMHYKATIGVDFALKVINWEP--DTVVRLQLWDI 66
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LV+GD GKTS ++ +V N F +YK T+GVDF+ K+++
Sbjct: 7 EYLFKVLVVGDIGTGKTSIIKRYVHNIFSMHYKATIGVDFALKVIN 52
>gi|42542760|gb|AAH66502.1| Rab32 protein [Danio rerio]
gi|62089548|gb|AAH92179.1| Rab32 protein [Danio rerio]
gi|182891326|gb|AAI64307.1| Rab32 protein [Danio rerio]
Length = 213
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 120/192 (62%), Gaps = 3/192 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ V+LQ+WDIA
Sbjct: 14 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSK--TLVRLQLWDIA 71
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FE+V +WKHDLD+K L NG +P +LLA+
Sbjct: 72 GQERFGNMTRVYYKEAVGAFIVFDITRGSTFEAVSKWKHDLDTKVKLANGNPIPSVLLAN 131
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD D + ++ C + F+ W E S+KE++ ++++ FLV+ I+ + +
Sbjct: 132 KCDQKKDGSNNSSLMDNFCKEAGFLGWFETSAKENINVDEAARFLVENILLNDKGLPYEE 191
Query: 420 ERKSSIRLSEET 431
I+L ++T
Sbjct: 192 NNGDKIKLDQQT 203
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 161 GTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR 220
G+ S + + +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 4 GSVSECKEYLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSK--T 61
Query: 221 PVKLQIWDI 229
V+LQ+WDI
Sbjct: 62 LVRLQLWDI 70
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 11 EYLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 56
>gi|410906851|ref|XP_003966905.1| PREDICTED: ras-related protein Rab-32-like [Takifugu rubripes]
Length = 225
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 118/180 (65%), Gaps = 11/180 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS--HKKYGGRPVKLQIWDIA 300
+L+ GD VGKTS + +V F +Y+ T+GVDF+ K+L+ HK V+LQ+WDIA
Sbjct: 9 VLVIGDIGVGKTSIITRYVHQVFSQHYRATIGVDFALKVLNWDHKTV----VRLQLWDIA 64
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY M+RVYY+ + G +++FD+T +F++V++WK DLDSK L NG +P +LLA+
Sbjct: 65 GQERYGNMTRVYYKEAVGALVVFDMTRLSTFQAVLKWKGDLDSKVALGNGRTVPAVLLAN 124
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
KCD D + ++ ++E+ +Y F+ W E S+K+ I+ ++ LV I+ +EEE+
Sbjct: 125 KCDQRDHGLCPKLPKLESFSREYGFIGWYETSAKDDTNIDAAITCLVKSIMS---LEEES 181
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 6/59 (10%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS--HKKYGGRPVKLQIWDI 229
+L+ GD VGKTS + +V F +Y+ T+GVDF+ K+L+ HK V+LQ+WDI
Sbjct: 9 VLVIGDIGVGKTSIITRYVHQVFSQHYRATIGVDFALKVLNWDHKTV----VRLQLWDI 63
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E +LK+LVIGD VGKTS + +V F +Y+ T+GVDF+ K+L+
Sbjct: 4 ERLLKVLVIGDIGVGKTSIITRYVHQVFSQHYRATIGVDFALKVLN 49
>gi|281200842|gb|EFA75058.1| Rab GTPase [Polysphondylium pallidum PN500]
Length = 250
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 109/172 (63%), Gaps = 5/172 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ GD GKTS ++ FV N F +YK+T+GVDF+ K+++ V+LQ+WDIA
Sbjct: 15 YKILVVGDIGTGKTSIIKRFVHNIFSMHYKSTIGVDFALKVINWDP--KTEVRLQLWDIA 72
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD-NGAMLPCLLLA 359
GQ+R+ M+RVYY+ + G +I FD+T +FE+V +WK D+DSK + +P +LLA
Sbjct: 73 GQERFGSMTRVYYKEAVGAMITFDVTRASTFEAVSKWKADIDSKVTIGPEEKPIPVVLLA 132
Query: 360 SKCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+KCDL NE++ C F+ W E S+KE+L IE + FLV+ I+
Sbjct: 133 NKCDLGKEGFIKTANEMDKYCKDNGFIGWFETSAKENLNIEKAARFLVEHIL 184
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ GD GKTS ++ FV N F +YK+T+GVDF+ K+++ V+LQ+WDI
Sbjct: 15 YKILVVGDIGTGKTSIIKRFVHNIFSMHYKSTIGVDFALKVINWDP--KTEVRLQLWDI 71
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILV+GD GKTS ++ FV N F +YK+T+GVDF+ K+++
Sbjct: 12 EYLYKILVVGDIGTGKTSIIKRFVHNIFSMHYKSTIGVDFALKVIN 57
>gi|449269571|gb|EMC80332.1| Ras-related protein Rab-38 [Columba livia]
Length = 212
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 115/182 (63%), Gaps = 4/182 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+LS V+LQ+WDIA
Sbjct: 11 YKLLVIGDLGVGKTSIIKRYVHQNFSPHYRATIGVDFALKVLSWD--AETVVRLQLWDIA 68
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK DLDSK +L NG +P +LLA+
Sbjct: 69 GQERFGNMTRVYYREAMGAFIVFDITRPATFEAVTKWKEDLDSKLVLPNGKPVPAVLLAN 128
Query: 361 KCDLPDRQVEINEI--EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
KCD + N I + C + F+ W E S+KE++ I ++ LV II S+ ++
Sbjct: 129 KCDQGIDVLMNNGIKMDQFCKENGFVGWFETSAKENININEASRCLVKHIIASESDPVQS 188
Query: 419 VE 420
+E
Sbjct: 189 LE 190
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+LS V+LQ+WDI
Sbjct: 11 YKLLVIGDLGVGKTSIIKRYVHQNFSPHYRATIGVDFALKVLSWD--AETVVRLQLWDI 67
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+LS
Sbjct: 8 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSPHYRATIGVDFALKVLS 53
>gi|260824890|ref|XP_002607400.1| hypothetical protein BRAFLDRAFT_204961 [Branchiostoma floridae]
gi|229292747|gb|EEN63410.1| hypothetical protein BRAFLDRAFT_204961 [Branchiostoma floridae]
Length = 180
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 112/170 (65%), Gaps = 4/170 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ GD GKTS ++ +V F +Y+ T+GVDF+ K+++ ++LQ+WDIA
Sbjct: 13 YKILVIGDLGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVINWD--ADTLIRLQLWDIA 70
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G ++FD+T +FE+V +WK+DLDSK L NG +P +LLA+
Sbjct: 71 GQERFGNMTRVYYKEAVGAFVVFDVTRASTFEAVSKWKNDLDSKVQLPNGQSIPAVLLAN 130
Query: 361 KCDLPDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
KCD + N +++ C + +F+ W E S+KE++ I+++ +LV R+
Sbjct: 131 KCDQAKEGMVNNTSQMDEYCKEKSFIGWFETSAKENINIDEAARYLVTRV 180
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ GD GKTS ++ +V F +Y+ T+GVDF+ K+++ ++LQ+WDI
Sbjct: 13 YKILVIGDLGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVINWD--ADTLIRLQLWDI 69
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILVIGD GKTS ++ +V F +Y+ T+GVDF+ K+++
Sbjct: 10 EHLYKILVIGDLGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVIN 55
>gi|355714911|gb|AES05158.1| RAB38, member RAS oncoprotein family [Mustela putorius furo]
Length = 230
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 127/205 (61%), Gaps = 14/205 (6%)
Query: 219 GRPVKLQIWDIYCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 278
GRP ++Q +P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+
Sbjct: 15 GRPARMQ--------APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFA 66
Query: 279 TKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWK 338
K+L V+LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK
Sbjct: 67 LKVLHWDPE--TVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVTKWK 124
Query: 339 HDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHL 395
+DLDSK L NG + +LLA+KCD + V +N +++ C ++ F+ W E S+KE++
Sbjct: 125 NDLDSKLSLPNGKPVSVVLLANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENI 183
Query: 396 MIEDSMNFLVDRIICSKRMEEEAVE 420
I+++ LV I+ ++ E++E
Sbjct: 184 NIDEASRCLVKHILANECDLMESIE 208
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 157 GRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 216
GRP +P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 15 GRPARMQAPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP 74
Query: 217 YGGRPVKLQIWDI 229
V+LQ+WDI
Sbjct: 75 E--TVVRLQLWDI 85
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 90 SPRASVIGFEPRPSDA---ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146
+PR+ P A E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+
Sbjct: 7 APRSGTARGRPARMQAPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFA 66
Query: 147 TKLL 150
K+L
Sbjct: 67 LKVL 70
>gi|402585290|gb|EJW79230.1| Ras family protein, partial [Wuchereria bancrofti]
Length = 225
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 118/187 (63%), Gaps = 3/187 (1%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+SP + ILI GD GK+S VQ + N F +YK TVGVDF+T+ L G +
Sbjct: 10 VSPKDQFLFKILIIGDVGTGKSSIVQRYAHNLFTQHYKATVGVDFATRTLLWSD--GATL 67
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
+LQ+WDI+GQDR+ M+RVYY+++ G I++FD T + +++ ++WK DLDSK L G
Sbjct: 68 RLQLWDISGQDRFSNMTRVYYKDAHGAIVVFDCTRQNTYDGALRWKSDLDSKITLATGKP 127
Query: 353 LPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
LPC+L+A+K DL D ++ ++E + F++ ++ S+K + IED+ L ++I+ K
Sbjct: 128 LPCILVANKADL-DNKITNGKLEECREKGGFLNALKTSAKANYGIEDAFGLLAEQILEIK 186
Query: 413 RMEEEAV 419
+ + AV
Sbjct: 187 KNGQYAV 193
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
SP + ILI GD GK+S VQ + N F +YK TVGVDF+T+ L G ++
Sbjct: 11 SPKDQFLFKILIIGDVGTGKSSIVQRYAHNLFTQHYKATVGVDFATRTLLWSD--GATLR 68
Query: 224 LQIWDI 229
LQ+WDI
Sbjct: 69 LQLWDI 74
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 91 PRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P S G+ P D + + KIL+IGD GK+S VQ + N F +YK TVGVDF+T+ L
Sbjct: 1 PSTSSNGYVVSPKD-QFLFKILIIGDVGTGKSSIVQRYAHNLFTQHYKATVGVDFATRTL 59
>gi|13385896|ref|NP_080681.1| ras-related protein Rab-32 [Mus musculus]
gi|37999779|sp|Q9CZE3.3|RAB32_MOUSE RecName: Full=Ras-related protein Rab-32
gi|12849626|dbj|BAB28421.1| unnamed protein product [Mus musculus]
gi|23268303|gb|AAN11298.1| RAB32 [Mus musculus]
gi|26353712|dbj|BAC40486.1| unnamed protein product [Mus musculus]
gi|74186726|dbj|BAE34818.1| unnamed protein product [Mus musculus]
gi|74195856|dbj|BAE30489.1| unnamed protein product [Mus musculus]
gi|74201136|dbj|BAE37425.1| unnamed protein product [Mus musculus]
gi|112293023|dbj|BAF02889.1| Rab32 [Mus musculus]
gi|148671579|gb|EDL03526.1| RAB32, member RAS oncogene family [Mus musculus]
Length = 223
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 129/195 (66%), Gaps = 11/195 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 24 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 80
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +F++V++WK+DLDSK L NG+ +P +LLA
Sbjct: 81 AGQERFGNMTRVYYKEALGAFVVFDISRSSTFDAVLKWKNDLDSKVHLPNGSPIPAVLLA 140
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR---ME 415
+KCD D ++++ C + F W E S+K+++ I+++ FLV+ ++ +++ E
Sbjct: 141 NKCDQKKDNSQSPSQMDQFCKDHGFTGWFETSAKDNINIDEATRFLVENMLANQQSFPSE 200
Query: 416 EEAVERKSSIRLSEE 430
E ++R I+L EE
Sbjct: 201 EIDLDR---IKLVEE 212
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 17 PETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 66
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 24 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 80
>gi|195401601|ref|XP_002059401.1| GJ18542 [Drosophila virilis]
gi|194142407|gb|EDW58813.1| GJ18542 [Drosophila virilis]
Length = 660
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 113/176 (64%), Gaps = 4/176 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L V+LQ+WDIA
Sbjct: 459 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLHWD--ANTIVRLQLWDIA 516
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +F+ V +WK DLDSK L +G+ +PC+LLA+
Sbjct: 517 GQERFGNMTRVYYKEAVGAFIVFDVTRSGTFDCVSKWKEDLDSKVQLPDGSPIPCILLAN 576
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD + + + ++ + F W E S+KE++ I+++ LV++I+ + ++
Sbjct: 577 KCDQEKQGIVTQPERMDEYVRENGFAGWFETSAKENINIDEAARALVNKILINDKL 632
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 98 FEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P E + KILVIG+ GKTS+++ +V F NY+ T+GVDF+ K+L
Sbjct: 448 MSPSGEKREHLYKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVL 500
>gi|118777684|ref|XP_308216.2| AGAP007654-PA [Anopheles gambiae str. PEST]
gi|116132020|gb|EAA04140.2| AGAP007654-PA [Anopheles gambiae str. PEST]
Length = 215
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 117/176 (66%), Gaps = 4/176 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L+ + ++LQ+WDIA
Sbjct: 13 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLNWDQ--NTIIRLQLWDIA 70
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +F++V++WK+DLDSK L +G +PC+LLA+
Sbjct: 71 GQERFGNMTRVYYKEAVGAFIVFDVTRSATFDAVIKWKNDLDSKVQLPDGKPIPCILLAN 130
Query: 361 KCDLPDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
K D + + +++ ++ F W E S+KE++ IE++ LV++I+ + ++
Sbjct: 131 KSDQQKQGIVTTPAKLDEYVKEHGFAGWFETSAKENVNIEEAAKSLVNKILMNDKL 186
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L+ + ++LQ+WDI
Sbjct: 13 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLNWDQ--NTIIRLQLWDI 69
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILVIG+ GKTS+++ +V F NY+ T+GVDF+ K+L+
Sbjct: 10 EHLYKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLN 55
>gi|443713143|gb|ELU06149.1| hypothetical protein CAPTEDRAFT_64412, partial [Capitella teleta]
Length = 190
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 114/170 (67%), Gaps = 4/170 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+++ ++LQ+WDIA
Sbjct: 23 YKVLVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVINWD--ADTLIRLQLWDIA 80
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + GC I+FD+T +F++V +WK+DLDSK L +G+ +PC+LLA+
Sbjct: 81 GQERFGNMTRVYYKEAVGCFIVFDVTRTSTFDAVQKWKNDLDSKVQLADGSPIPCVLLAN 140
Query: 361 KCDLPDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
KCD + + ++E C + F++W E S+KE++ I++S LV ++
Sbjct: 141 KCDQSKEGMVTSQTQMEEFCRERGFITWFETSAKENINIDESARCLVSKV 190
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+++ ++LQ+WDI
Sbjct: 23 YKVLVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVINWD--ADTLIRLQLWDI 79
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIG+ GKTS ++ +V F +Y+ T+GVDF+ K+++
Sbjct: 20 EHLYKVLVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVIN 65
>gi|16741109|gb|AAH16409.1| RAB32, member RAS oncogene family [Mus musculus]
gi|33585672|gb|AAH55945.1| RAB32, member RAS oncogene family [Mus musculus]
Length = 223
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 129/195 (66%), Gaps = 11/195 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 24 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 80
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +F++V++WK+DLDSK L NG+ +P +LLA
Sbjct: 81 AGQERFGNMTRVYYKEALGAFVVFDISRSSTFDAVLKWKNDLDSKVHLPNGSPIPAVLLA 140
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR---ME 415
+KCD D ++++ C + F W E S+K+++ I+++ FLV+ ++ +++ E
Sbjct: 141 NKCDQKKDNSQSPSQMDQFCKDHGFSGWFETSAKDNINIDEATRFLVENMLANQQSFPSE 200
Query: 416 EEAVERKSSIRLSEE 430
E ++R I+L EE
Sbjct: 201 EIDLDR---IKLVEE 212
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 17 PETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 66
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 24 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 80
>gi|348511017|ref|XP_003443041.1| PREDICTED: ras-related protein Rab-32-like [Oreochromis niloticus]
Length = 224
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 120/191 (62%), Gaps = 6/191 (3%)
Query: 229 IYCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG 288
I TLS ++ + +L+ GD VGK+S V +V +F + YK ++GVDF+ K +
Sbjct: 4 ISVTLSTEKL--FKVLVIGDLGVGKSSVVMRYVNKRFDETYKASIGVDFALKTIEWDP-- 59
Query: 289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD 348
V+LQ+WDI GQ+R MSRVYY+ + G +++FD+TN + E+ +WK DLD+K LD
Sbjct: 60 KTVVRLQLWDIGGQERVKNMSRVYYKEAMGAVVVFDITNSCTLEAASEWKQDLDTKVRLD 119
Query: 349 NGAMLPCLLLASKCDLPDR-QVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
+G +P +LLA+KCDL R + ++ +++ C +F+ W E S+KE + IE++ FLV +
Sbjct: 120 SGQPIPAVLLANKCDLTGRDEALVSSLDSFCKDNSFLGWFETSAKEDINIEEAGAFLVKQ 179
Query: 408 I-ICSKRMEEE 417
I +C + E
Sbjct: 180 IMLCDTSLSTE 190
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD VGK+S V +V +F + YK ++GVDF+ K + V+LQ+WDI
Sbjct: 14 FKVLVIGDLGVGKSSVVMRYVNKRFDETYKASIGVDFALKTIEWDP--KTVVRLQLWDI 70
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGK+S V +V +F + YK ++GVDF+ K +
Sbjct: 11 EKLFKVLVIGDLGVGKSSVVMRYVNKRFDETYKASIGVDFALKTI 55
>gi|194754483|ref|XP_001959524.1| GF12008 [Drosophila ananassae]
gi|190620822|gb|EDV36346.1| GF12008 [Drosophila ananassae]
Length = 405
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 114/176 (64%), Gaps = 4/176 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L V+LQ+WDIA
Sbjct: 202 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLQWD--ANTIVRLQLWDIA 259
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +F+ V +WK DLDSK L +G+ +PC+LLA+
Sbjct: 260 GQERFGNMTRVYYKEAVGAFIVFDVTRSGTFDCVSKWKEDLDSKVQLPDGSPIPCILLAN 319
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD + + + +++ + F W E S+KE++ I+++ LV++I+ + ++
Sbjct: 320 KCDQEKQGIITQPEKMDEYVRENGFAGWFETSAKENINIDEAARALVNKILINDKL 375
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KILVIG+ GKTS+++ +V F NY+ T+GVDF+ K+L
Sbjct: 199 EHLYKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVL 243
>gi|47224601|emb|CAG03585.1| unnamed protein product [Tetraodon nigroviridis]
Length = 212
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 125/196 (63%), Gaps = 9/196 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+++ ++LQ+WDIA
Sbjct: 14 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVINWDSK--TLIRLQLWDIA 71
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G ++FD+T +FE+V +WKHDLDSK L NG +P +LLA+
Sbjct: 72 GQERFGNMTRVYYKEAVGAFVVFDVTRGSTFEAVSKWKHDLDSKVKLANGNPIPSVLLAN 131
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR---MEE 416
KCD + ++ C + F+ W E S+K+++ ++++ +FLV+ I+ + + EE
Sbjct: 132 KCDQKKESFNSKALMDSFCKEAGFLGWFETSAKDNINVDEAAHFLVESILGNDKGLPYEE 191
Query: 417 EAVERKSSIRLSEETL 432
+R ++L +ET+
Sbjct: 192 SNGDR---VKLDQETV 204
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 161 GTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR 220
G+ S + + +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+++
Sbjct: 4 GSVSECREYLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVINWDS--KT 61
Query: 221 PVKLQIWDI 229
++LQ+WDI
Sbjct: 62 LIRLQLWDI 70
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+++
Sbjct: 11 EYLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVIN 56
>gi|301122745|ref|XP_002909099.1| Rab32 family GTPase, putative [Phytophthora infestans T30-4]
gi|262099861|gb|EEY57913.1| Rab32 family GTPase, putative [Phytophthora infestans T30-4]
Length = 218
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 132/220 (60%), Gaps = 11/220 (5%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
++ Q +L+ GD+ GKTS ++ +V + F ++++ T+GVDF+ K ++ G V
Sbjct: 6 VNAAQDAVIKVLVLGDAATGKTSIIKRYVHDAFSEHHRTTIGVDFALKAVT---VSGTTV 62
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
+LQ+WDIAGQ+ + ++RVYY+++ G ++++D++ ++F+S+++WK ++DSK L NG
Sbjct: 63 RLQLWDIAGQEHFRALNRVYYKDALGALLVYDMSRPETFDSIMKWKKEIDSKVELPNGKP 122
Query: 353 LPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
LP +L +KCDL + V+ + ++ C+ NF W + S+KE++ I+D+ LV I+ K
Sbjct: 123 LPVILCGNKCDLKE-DVDRDFLDEFCNTNNFTGWFDTSAKENIHIDDAAKALVTGILEHK 181
Query: 413 RMEEEAVERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
+ +RKS + +T R P + + WC
Sbjct: 182 ----DIFKRKSEAKKRNDTFR---PTSAANSGNANQSSWC 214
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 39/57 (68%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+L+ GD+ GKTS ++ +V + F ++++ T+GVDF+ K ++ G V+LQ+WDI
Sbjct: 16 VLVLGDAATGKTSIIKRYVHDAFSEHHRTTIGVDFALKAVT---VSGTTVRLQLWDI 69
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 35/46 (76%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ V+K+LV+GD+ GKTS ++ +V + F ++++ T+GVDF+ K ++
Sbjct: 11 DAVIKVLVLGDAATGKTSIIKRYVHDAFSEHHRTTIGVDFALKAVT 56
>gi|170053912|ref|XP_001862890.1| rab32 [Culex quinquefasciatus]
gi|167874360|gb|EDS37743.1| rab32 [Culex quinquefasciatus]
Length = 215
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 115/175 (65%), Gaps = 4/175 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L+ + ++LQ+WDIA
Sbjct: 13 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLNWDQ--NTIIRLQLWDIA 70
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +F++V++WK DLDSK L +G +PC+LLA+
Sbjct: 71 GQERFGNMTRVYYKEAVGAFIVFDVTRSATFDAVIKWKQDLDSKVQLPDGKPIPCILLAN 130
Query: 361 KCDLPDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K D + + +++ ++ F W E S+KE++ IE++ LV++I+ + +
Sbjct: 131 KSDQQKQGIVTTPAKLDEYVKEHGFAGWFETSAKENVNIEEAAKSLVNKILTNDK 185
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L+ + ++LQ+WDI
Sbjct: 13 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLNWDQ--NTIIRLQLWDI 69
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILVIG+ GKTS+++ +V F NY+ T+GVDF+ K+L+
Sbjct: 10 EHLYKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLN 55
>gi|303274120|gb|ADM07446.1| Rab32 [Helicoverpa armigera]
Length = 231
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 118/177 (66%), Gaps = 6/177 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+ ++LQ+WDIA
Sbjct: 24 YKILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWD--SNTIIRLQLWDIA 81
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD++ +F++VV+WK+DLD+K L +G+ +PC+LLA+
Sbjct: 82 GQERFGNMTRVYYKEAVGAFIVFDVSRVATFDAVVKWKNDLDAKVQLPDGSPIPCILLAN 141
Query: 361 KCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD + +N ++E C + F W E S+KE++ IE++ LV++I+ + ++
Sbjct: 142 KCDQQKEGI-VNSQAKMEEYCREKGFAGWFETSAKENINIEEAARSLVNKILLNDKL 197
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+ ++LQ+WDI
Sbjct: 24 YKILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWD--SNTIIRLQLWDI 80
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILVIG+ GKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 21 EHLYKILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLN 66
>gi|224043671|ref|XP_002188382.1| PREDICTED: ras-related protein Rab-38 [Taeniopygia guttata]
Length = 212
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 115/182 (63%), Gaps = 4/182 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L+ V+LQ+WDIA
Sbjct: 11 YKLLVIGDLGVGKTSIIKRYVHQNFSPHYRATIGVDFALKVLNWD--AETVVRLQLWDIA 68
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK DLDSK +L NG +P +LLA+
Sbjct: 69 GQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVTKWKEDLDSKLVLPNGKPVPAVLLAN 128
Query: 361 KCDLPDRQVEINEI--EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
KCD + N I + C + F+ W E S+KE++ I ++ LV II S+ ++
Sbjct: 129 KCDQGIDVLMNNGIKMDQFCKENGFVGWFETSAKENININEASRCLVKHIIASESDPVQS 188
Query: 419 VE 420
VE
Sbjct: 189 VE 190
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L+ V+LQ+WDI
Sbjct: 11 YKLLVIGDLGVGKTSIIKRYVHQNFSPHYRATIGVDFALKVLNWD--AETVVRLQLWDI 67
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 8 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSPHYRATIGVDFALKVLN 53
>gi|194863234|ref|XP_001970342.1| GG10573 [Drosophila erecta]
gi|190662209|gb|EDV59401.1| GG10573 [Drosophila erecta]
Length = 414
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 114/176 (64%), Gaps = 4/176 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L V+LQ+WDIA
Sbjct: 212 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLQWD--ANTIVRLQLWDIA 269
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +F+ V +WK DLDSK L +G+ +PC+LLA+
Sbjct: 270 GQERFGNMTRVYYKEAVGAFIVFDVTRSGTFDCVSKWKEDLDSKVQLPDGSPIPCILLAN 329
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD + + + +++ + F W E S+KE++ I+++ LV++I+ + ++
Sbjct: 330 KCDQEKQGIITQPEKMDEYVRENGFAGWFETSAKENINIDEAARALVNKILINDKL 385
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KILVIG+ GKTS+++ +V F NY+ T+GVDF+ K+L
Sbjct: 209 EHLYKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVL 253
>gi|41152211|ref|NP_958489.1| ras-related protein Rab-32 [Danio rerio]
gi|29437266|gb|AAH49531.1| RAB32, member RAS oncogene family [Danio rerio]
Length = 213
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 114/174 (65%), Gaps = 3/174 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ V+LQ+WDIA
Sbjct: 14 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSK--TLVRLQLWDIA 71
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FE+V +WKHDLD+K L NG +P +LLA+
Sbjct: 72 GQERFGNMTRVYYKEAVGAFIVFDITRGSTFEAVSKWKHDLDTKVKLANGNPIPSVLLAN 131
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCD D + ++ C + F+ W E S+KE++ ++++ FLV+ I+ + +
Sbjct: 132 KCDQKKDGSNNSSLMDNFCKEAGFLGWFETSAKENINVDEAARFLVENILLNDK 185
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 161 GTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR 220
G+ S + + +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 4 GSVSECKEYLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSK--T 61
Query: 221 PVKLQIWDI 229
V+LQ+WDI
Sbjct: 62 LVRLQLWDI 70
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 11 EYLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 56
>gi|126310667|ref|XP_001370750.1| PREDICTED: ras-related protein Rab-32-like [Monodelphis domestica]
Length = 225
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 127/196 (64%), Gaps = 8/196 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ V+LQ+WDIA
Sbjct: 27 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSK--TLVRLQLWDIA 84
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G ++FD++ +F++V++WK+DLDSK L NG +P +LLA+
Sbjct: 85 GQERFGNMTRVYYKEAVGAFVVFDISRGSTFDAVLKWKNDLDSKVQLPNGIPIPTILLAN 144
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM--EEE 417
KCD D ++++ C + F W E S+K+++ I++++ FLV+ I+ + E+
Sbjct: 145 KCDQKKDSGHSPSQMDQFCKENGFTGWFETSAKDNINIDEAVRFLVENILAHYKNFPNED 204
Query: 418 AVERKSSIRLSEETLR 433
V + I+L ++TLR
Sbjct: 205 DVGK---IKLDQDTLR 217
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 157 GRPYGTFSP-IQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 215
G GT P Q + +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 12 GVAAGTAVPETQEHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWD 71
Query: 216 KYGGRPVKLQIWDI 229
V+LQ+WDI
Sbjct: 72 SK--TLVRLQLWDI 83
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 20 PETQEHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 69
>gi|156398287|ref|XP_001638120.1| predicted protein [Nematostella vectensis]
gi|156225238|gb|EDO46057.1| predicted protein [Nematostella vectensis]
Length = 195
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 110/169 (65%), Gaps = 2/169 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD GK S+V+ +V N + YK T+GVDF+ K + + ++LQIW IA
Sbjct: 9 FKVLVVGDILTGKQSFVKRYVNNIWHPLYKPTIGVDFALKTIQWAQ--NTTIRLQIWLIA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ +D C+++FDL + + + ++WK DLDSK L + +PC+L+ +
Sbjct: 67 GQERFSSMTRVYYKGADACVVLFDLERQTTLDGAIKWKKDLDSKYKLHSRKPVPCILVGN 126
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
K DLPDR V+ I+ +C +++F+ W E+S KE + ++ M +LV ++
Sbjct: 127 KSDLPDRPVDKEIIDKLCKEHSFLCWTEMSVKEDINVKKPMEYLVKHLM 175
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 168 TPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 227
T ++ +L+ GD GK S+V+ +V N + YK T+GVDF+ K + + ++LQIW
Sbjct: 6 TRNFKVLVVGDILTGKQSFVKRYVNNIWHPLYKPTIGVDFALKTIQWAQ--NTTIRLQIW 63
Query: 228 DI 229
I
Sbjct: 64 LI 65
Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
K+LV+GD GK S+V+ +V N + YK T+GVDF+ K +
Sbjct: 9 FKVLVVGDILTGKQSFVKRYVNNIWHPLYKPTIGVDFALKTIQ 51
>gi|24652026|ref|NP_724764.1| lightoid, isoform C [Drosophila melanogaster]
gi|24652028|ref|NP_724765.1| lightoid, isoform E [Drosophila melanogaster]
gi|17861992|gb|AAL39473.1| LD04613p [Drosophila melanogaster]
gi|21627636|gb|AAM68817.1| lightoid, isoform C [Drosophila melanogaster]
gi|21627637|gb|AAM68818.1| lightoid, isoform E [Drosophila melanogaster]
gi|220942922|gb|ACL84004.1| ltd-PC [synthetic construct]
gi|220953086|gb|ACL89086.1| ltd-PC [synthetic construct]
Length = 388
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 114/176 (64%), Gaps = 4/176 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L V+LQ+WDIA
Sbjct: 186 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLQWD--ANTIVRLQLWDIA 243
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +F+ V +WK DLDSK L +G+ +PC+LLA+
Sbjct: 244 GQERFGNMTRVYYKEAVGAFIVFDVTRSGTFDCVSKWKEDLDSKVQLPDGSPIPCILLAN 303
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD + + + +++ + F W E S+KE++ I+++ LV++I+ + ++
Sbjct: 304 KCDQEKQGIITQPEKMDEYVRENGFAGWFETSAKENINIDEAARALVNKILINDKL 359
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KILVIG+ GKTS+++ +V F NY+ T+GVDF+ K+L
Sbjct: 183 EHLYKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVL 227
>gi|326434156|gb|EGD79726.1| rab GTPase [Salpingoeca sp. ATCC 50818]
Length = 210
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 109/170 (64%), Gaps = 3/170 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ GDS VGKTS ++ +V D YK T+GVDF+ K+L + V+LQ+WDIA
Sbjct: 11 YKVLVVGDSGVGKTSLIKRYVHGVASDKYKATIGVDFALKVLQVNE--NTTVRLQLWDIA 68
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G ++FD+T +F++V WK D+D+K L +G+ +P +L+A+
Sbjct: 69 GQERFGSMTRVYYKEAVGAFVVFDVTRLDTFKAVKTWKEDIDAKVFLPDGSKIPVVLMAN 128
Query: 361 KCDLPDRQVEIN-EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL E++ C F+SW E S+K + IE+++N LV I+
Sbjct: 129 KCDLAVEGFRTQEEMQEYCANMGFVSWFETSAKLNKNIEEAVNCLVQNIL 178
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ GDS VGKTS ++ +V D YK T+GVDF+ K+L + V+LQ+WDI
Sbjct: 11 YKVLVVGDSGVGKTSLIKRYVHGVASDKYKATIGVDFALKVLQVNE--NTTVRLQLWDI 67
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LV+GDS VGKTS ++ +V D YK T+GVDF+ K+L
Sbjct: 8 ELLYKVLVVGDSGVGKTSLIKRYVHGVASDKYKATIGVDFALKVL 52
>gi|330791341|ref|XP_003283752.1| Rab GTPase [Dictyostelium purpureum]
gi|325086375|gb|EGC39766.1| Rab GTPase [Dictyostelium purpureum]
Length = 218
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 121/193 (62%), Gaps = 5/193 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ GD GKTS ++ FV N F +YK+T+GVDF+ K+++ V+LQ+WDIA
Sbjct: 16 YKILVVGDIGTGKTSIIKRFVHNIFSMHYKSTIGVDFALKVINWDP--KTEVRLQLWDIA 73
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD-NGAMLPCLLLA 359
GQ+R+ M+RVYY+ + G +I FD+T +FE+V +WK D+DSK +P +LLA
Sbjct: 74 GQERFGSMTRVYYKEAVGAMITFDVTRMSTFEAVAKWKADIDSKVTYGPEEKPIPVVLLA 133
Query: 360 SKCDL-PDRQVEI-NEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
+KCDL D ++ N+++ C F+ W E S+KE++ IE + FLVD I+ + +
Sbjct: 134 NKCDLGKDAFIKTANDMDKYCKDNGFIGWFETSAKENMNIEKAARFLVDHILKNDIRRNQ 193
Query: 418 AVERKSSIRLSEE 430
++ ++ L+++
Sbjct: 194 PLQDNDAVDLNKQ 206
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILV+GD GKTS ++ FV N F +YK+T+GVDF+ K+++
Sbjct: 13 EYLYKILVVGDIGTGKTSIIKRFVHNIFSMHYKSTIGVDFALKVIN 58
>gi|118085220|ref|XP_425653.2| PREDICTED: ras-related protein Rab-38 [Gallus gallus]
gi|326914516|ref|XP_003203571.1| PREDICTED: ras-related protein Rab-38-like [Meleagris gallopavo]
Length = 212
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 111/174 (63%), Gaps = 4/174 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+LS V+LQ+WDIA
Sbjct: 11 YKLLVIGDLGVGKTSIIKRYVHQNFSPHYRATIGVDFALKVLSWD--AETVVRLQLWDIA 68
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK DLDSK +L NG +P +LLA+
Sbjct: 69 GQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVTKWKEDLDSKLVLPNGKPVPTVLLAN 128
Query: 361 KCDLPDRQVEINEI--EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCD + N I + C + F+ W E S+KE++ I ++ LV II ++
Sbjct: 129 KCDQGIDVLMNNGIKMDQFCKENGFVGWFETSAKENININEASRCLVKHIIATE 182
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+LS V+LQ+WDI
Sbjct: 11 YKLLVIGDLGVGKTSIIKRYVHQNFSPHYRATIGVDFALKVLSWD--AETVVRLQLWDI 67
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+LS
Sbjct: 8 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSPHYRATIGVDFALKVLS 53
>gi|66810506|ref|XP_638960.1| Rab GTPase [Dictyostelium discoideum AX4]
gi|74897084|sp|Q54QR3.1|RB32A_DICDI RecName: Full=Ras-related protein Rab-32A
gi|60467547|gb|EAL65568.1| Rab GTPase [Dictyostelium discoideum AX4]
Length = 219
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 116/183 (63%), Gaps = 5/183 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ GD GKTS ++ FV N F +YK+T+GVDF+ K+++ V+LQ+WDIA
Sbjct: 16 YKILVVGDIGTGKTSIIKRFVHNIFSMHYKSTIGVDFALKVINWDP--KTEVRLQLWDIA 73
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD-NGAMLPCLLLA 359
GQ+R+ M+RVYY+ + G +I FD+T +FE+V +WK D+DSK + +P +LLA
Sbjct: 74 GQERFGSMTRVYYKEAVGAMITFDVTRMSTFEAVAKWKADIDSKVTYGADEKPIPVVLLA 133
Query: 360 SKCDL-PDRQVEI-NEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
+KCDL D ++ N+++ C F+ W E S+KE++ IE + FLVD I+ + +
Sbjct: 134 NKCDLGKDAFIKTANDMDKYCKDNGFIGWFETSAKENMNIEKAARFLVDHILKNDVRRNQ 193
Query: 418 AVE 420
+E
Sbjct: 194 PIE 196
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILV+GD GKTS ++ FV N F +YK+T+GVDF+ K+++
Sbjct: 13 EYLYKILVVGDIGTGKTSIIKRFVHNIFSMHYKSTIGVDFALKVIN 58
>gi|4566765|gb|AAD23450.1|AF116859_1 small GTPase rabE [Dictyostelium discoideum]
Length = 228
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 116/183 (63%), Gaps = 5/183 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ GD GKTS ++ FV N F +YK+T+GVDF+ K+++ V+LQ+WDIA
Sbjct: 25 YKILVVGDIGTGKTSIIKRFVHNIFSMHYKSTIGVDFALKVINWDP--KTEVRLQLWDIA 82
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD-NGAMLPCLLLA 359
GQ+R+ M+RVYY+ + G +I FD+T +FE+V +WK D+DSK + +P +LLA
Sbjct: 83 GQERFGSMTRVYYKEAVGAMITFDVTRMSTFEAVAKWKADIDSKVTYGADEKPIPVVLLA 142
Query: 360 SKCDL-PDRQVEI-NEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
+KCDL D ++ N+++ C F+ W E S+KE++ IE + FLVD I+ + +
Sbjct: 143 NKCDLGKDAFIKTANDMDKYCKDNGFIGWFETSAKENMNIEKAARFLVDHILKNDVRRNQ 202
Query: 418 AVE 420
+E
Sbjct: 203 PIE 205
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILV+GD GKTS ++ FV N F +YK+T+GVDF+ K+++
Sbjct: 22 EYLYKILVVGDIGTGKTSIIKRFVHNIFSMHYKSTIGVDFALKVIN 67
>gi|301774833|ref|XP_002922840.1| PREDICTED: ras-related protein Rab-32-like [Ailuropoda melanoleuca]
Length = 281
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 127/197 (64%), Gaps = 11/197 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 82 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDNRTLVRLQLWDI 138
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G I+FD++ +FE+V++WK DLD K L NG+ +P +LLA
Sbjct: 139 AGQERFGNMTRVYYREAVGAFIVFDISRGSTFEAVLKWKSDLDGKVRLANGSPIPAVLLA 198
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR---ME 415
+KCD D +++ C ++ F W E S+K+++ I+++ FLV+ I+ + + E
Sbjct: 199 NKCDQKKDGGQNPPQMDQFCKEHGFTGWFETSAKDNINIDEAARFLVENILANHQSFPSE 258
Query: 416 EEAVERKSSIRLSEETL 432
E V++ I+L + TL
Sbjct: 259 ENDVDK---IKLDQGTL 272
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 75 PETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 124
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 82 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDNRTLVRLQLWDI 138
>gi|281208325|gb|EFA82501.1| Rab GTPase [Polysphondylium pallidum PN500]
Length = 218
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 118/193 (61%), Gaps = 2/193 (1%)
Query: 236 IQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQ 295
+Q Y IL+ GD VGKTS ++ + F NYK T+GVDF+ K + K V LQ
Sbjct: 9 VQQHLYKILVIGDYAVGKTSIIKRYCTGMFSPNYKLTIGVDFAVKEVQWDK--NTTVSLQ 66
Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
+WDIAG +R+ M+RVYY+ + II+FDL +FE+V +W+ D++SK +L N +P
Sbjct: 67 LWDIAGHERFGTMTRVYYKYAIAAIIVFDLGRPTTFEAVTKWRDDINSKVVLGNQQPIPV 126
Query: 356 LLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
LLLA+KCD+ D ++ ++ ++NF+ W S++ ++ I+++M FL +++ +
Sbjct: 127 LLLANKCDMKDSSIDKAMLDNFVKEHNFIGWFPTSAQSNINIDEAMMFLTGKVLEVAKTN 186
Query: 416 EEAVERKSSIRLS 428
+ + ++++ L+
Sbjct: 187 QPPKQEENTLNLT 199
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 166 IQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQ 225
+Q Y IL+ GD VGKTS ++ + F NYK T+GVDF+ K + K V LQ
Sbjct: 9 VQQHLYKILVIGDYAVGKTSIIKRYCTGMFSPNYKLTIGVDFAVKEVQWDK--NTTVSLQ 66
Query: 226 IWDI 229
+WDI
Sbjct: 67 LWDI 70
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
KILVIGD VGKTS ++ + F NYK T+GVDF+ K
Sbjct: 15 KILVIGDYAVGKTSIIKRYCTGMFSPNYKLTIGVDFAVK 53
>gi|24652024|ref|NP_724763.1| lightoid, isoform D [Drosophila melanogaster]
gi|23240365|gb|AAM68816.2| lightoid, isoform D [Drosophila melanogaster]
gi|237681229|gb|ACR10181.1| FI09421p [Drosophila melanogaster]
Length = 222
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 114/176 (64%), Gaps = 4/176 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L V+LQ+WDIA
Sbjct: 20 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLQWD--ANTIVRLQLWDIA 77
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +F+ V +WK DLDSK L +G+ +PC+LLA+
Sbjct: 78 GQERFGNMTRVYYKEAVGAFIVFDVTRSGTFDCVSKWKEDLDSKVQLPDGSPIPCILLAN 137
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD + + + +++ + F W E S+KE++ I+++ LV++I+ + ++
Sbjct: 138 KCDQEKQGIITQPEKMDEYVRENGFAGWFETSAKENINIDEAARALVNKILINDKL 193
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KILVIG+ GKTS+++ +V F NY+ T+GVDF+ K+L
Sbjct: 17 EHLYKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVL 61
>gi|432896162|ref|XP_004076289.1| PREDICTED: ras-related protein Rab-32-like [Oryzias latipes]
Length = 207
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 123/192 (64%), Gaps = 7/192 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD VGKTS ++ +V F +Y+ T+GVDF K+L R V+LQ+WDIA
Sbjct: 8 FKVLVIGDLGVGKTSIIKRYVHQIFSQHYRATIGVDFVLKVLQWDN--DRVVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY M+RVYY+ + G +++FD+T +F++V++WK DLDSK L +G +P +LLA+
Sbjct: 66 GQERYGNMTRVYYREAVGALVVFDVTRASTFDAVLKWKDDLDSKVTLSHGRPVPAVLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
K D QV ++++ C + F+ W S+K++ IE++ LV+ I+ ++ E A E
Sbjct: 126 KSDQMASQVP--KLDSFCRENGFVGWFGTSAKDNTNIEEAARCLVEHILTNE--ESPAAE 181
Query: 421 RKS-SIRLSEET 431
R+S S+ LS T
Sbjct: 182 RESGSLILSGHT 193
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD VGKTS ++ +V F +Y+ T+GVDF K+L R V+LQ+WDI
Sbjct: 8 FKVLVIGDLGVGKTSIIKRYVHQIFSQHYRATIGVDFVLKVLQWDN--DRVVRLQLWDI 64
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 31/45 (68%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF K+L
Sbjct: 5 EFLFKVLVIGDLGVGKTSIIKRYVHQIFSQHYRATIGVDFVLKVL 49
>gi|6561893|dbj|BAA88238.1| Rab-related protein 1 [Drosophila melanogaster]
Length = 231
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 114/176 (64%), Gaps = 4/176 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS+++ +V F NY+ T+GVDF+ K+L V+LQ+WDIA
Sbjct: 29 YKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLQWD--ANTIVRLQLWDIA 86
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +F+ V +WK DLDSK L +G+ +PC+LLA+
Sbjct: 87 GQERFGNMTRVYYKEAVGAFIVFDVTRSGTFDCVSKWKEDLDSKVQLPDGSPIPCILLAN 146
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD + + + +++ + F W E S+KE++ I+++ LV++I+ + ++
Sbjct: 147 KCDQEKQGIITQPEKMDEYVRENGFAGWFETSAKENINIDEAARALVNKILINDKL 202
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KILVIG+ GKTS+++ +V F NY+ T+GVDF+ K+L
Sbjct: 26 EHLYKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVL 70
>gi|193657249|ref|XP_001950152.1| PREDICTED: ras-related protein Rab-38-like isoform 1 [Acyrthosiphon
pisum]
Length = 239
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 117/180 (65%), Gaps = 5/180 (2%)
Query: 232 TLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 291
+L+P + + IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K L
Sbjct: 31 SLAPTEY-LFKILVIGELGTGKTSIIKRYVHKFFSQHYRATIGVDFALKSLEWD--SNTV 87
Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA 351
++LQ+WDIAGQ+R+ M+RVYY+++ G ++FD+T +FE+V +WK DLD+K L++G+
Sbjct: 88 IRLQLWDIAGQERFGNMTRVYYKDALGAFVVFDVTRPATFEAVAKWKQDLDAKVSLEDGS 147
Query: 352 MLPCLLLASKCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+PC+LLA+KCD + I +++ C + F +W E S+KE++ I+D+ LV +I+
Sbjct: 148 PIPCVLLANKCDETKEGMVNSIAKMDEFCKENMFTAWYETSAKENVHIDDAAKTLVTQIL 207
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K L ++LQ+WDI
Sbjct: 39 FKILVIGELGTGKTSIIKRYVHKFFSQHYRATIGVDFALKSLEWD--SNTVIRLQLWDI 95
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KILVIG+ GKTS ++ +V F +Y+ T+GVDF+ K L
Sbjct: 36 EYLFKILVIGELGTGKTSIIKRYVHKFFSQHYRATIGVDFALKSL 80
>gi|348524951|ref|XP_003449986.1| PREDICTED: ras-related protein Rab-32-like isoform 2 [Oreochromis
niloticus]
Length = 206
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 123/196 (62%), Gaps = 9/196 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+++ V+LQ+WDIA
Sbjct: 7 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVINWD--SKTLVRLQLWDIA 64
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G ++FD+T +F++V +WKHDLDSK L NG +P +LLA+
Sbjct: 65 GQERFGNMTRVYYKEAVGAFVVFDVTRGSTFDAVSKWKHDLDSKVKLANGNPIPSVLLAN 124
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR---MEE 416
KCD + + C + F+ W E S+K+++ ++++ FLV+ I+ + + EE
Sbjct: 125 KCDQKKENSNNTALMDNFCKETGFLGWFETSAKDNINVDEAARFLVENILANDKGLPYEE 184
Query: 417 EAVERKSSIRLSEETL 432
+R I+L +ET+
Sbjct: 185 SNGDR---IKLDQETV 197
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
Q + +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+++ V+LQ+
Sbjct: 3 QEYLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVINWD--SKTLVRLQL 60
Query: 227 WDI 229
WDI
Sbjct: 61 WDI 63
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+++
Sbjct: 4 EYLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVIN 49
>gi|348524949|ref|XP_003449985.1| PREDICTED: ras-related protein Rab-32-like isoform 1 [Oreochromis
niloticus]
Length = 213
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 123/196 (62%), Gaps = 9/196 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+++ V+LQ+WDIA
Sbjct: 14 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVINWDS--KTLVRLQLWDIA 71
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G ++FD+T +F++V +WKHDLDSK L NG +P +LLA+
Sbjct: 72 GQERFGNMTRVYYKEAVGAFVVFDVTRGSTFDAVSKWKHDLDSKVKLANGNPIPSVLLAN 131
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR---MEE 416
KCD + + C + F+ W E S+K+++ ++++ FLV+ I+ + + EE
Sbjct: 132 KCDQKKENSNNTALMDNFCKETGFLGWFETSAKDNINVDEAARFLVENILANDKGLPYEE 191
Query: 417 EAVERKSSIRLSEETL 432
+R I+L +ET+
Sbjct: 192 SNGDR---IKLDQETV 204
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 161 GTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR 220
G+ S + + +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+++
Sbjct: 4 GSVSECKEYLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVINWDS--KT 61
Query: 221 PVKLQIWDI 229
V+LQ+WDI
Sbjct: 62 LVRLQLWDI 70
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+++
Sbjct: 11 EYLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVIN 56
>gi|296471962|tpg|DAA14077.1| TPA: RAB38, member of RAS oncogene family-like [Bos taurus]
Length = 268
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 118/184 (64%), Gaps = 10/184 (5%)
Query: 236 IQIP----TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 291
+Q+P Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 58 MQVPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETV-- 115
Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA 351
V+LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG
Sbjct: 116 VRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVTKWKNDLDSKLSLPNGK 175
Query: 352 MLPCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ +LLA+KCD + V +N +++ C ++ F+ W E S+KE++ I+++ LV I
Sbjct: 176 PVSVVLLANKCD-QGKDVLLNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHI 234
Query: 409 ICSK 412
+ ++
Sbjct: 235 LANE 238
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 79 PARELCKSNSPSPRASVIGFE--PRPSDAET--------VLKILVIGDSTVGKTSYVQGF 128
PA L +S P PR G + PR A T + K+LVIGD VGKTS ++ +
Sbjct: 27 PALALPESLWPGPRRRFPGPQQAPRGRRAATMQVPHKEHLYKLLVIGDLGVGKTSIIKRY 86
Query: 129 VQNKFLDNYKNTVGVDFSTKLL 150
V F +Y+ T+GVDF+ K+L
Sbjct: 87 VHQNFSSHYRATIGVDFALKVL 108
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+LQ+WDI
Sbjct: 67 YKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETV--VRLQLWDI 123
>gi|241030850|ref|XP_002406512.1| GTP-binding protein RAB-32, putative [Ixodes scapularis]
gi|215491988|gb|EEC01629.1| GTP-binding protein RAB-32, putative [Ixodes scapularis]
Length = 228
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 114/176 (64%), Gaps = 6/176 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ GD GKTS ++ +V F +Y+ T+GVDF+ K+++ + ++LQ+WDIA
Sbjct: 25 YKILVIGDLGTGKTSIIKRYVHQFFSHHYRATIGVDFALKVINWDE--NTLIRLQLWDIA 82
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T ++FE+V +WK DLDSK G +PC+LL +
Sbjct: 83 GQERFGNMTRVYYKEAVGAFIVFDVTRSQTFEAVKKWKMDLDSKVQQPEGNSIPCVLLGN 142
Query: 361 KCDLPDRQVEINEIEAV---CHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCD+ + +N A+ C + NF W S+KE+L I+++ FL+ +I+ +++
Sbjct: 143 KCDMSKEGI-VNSSSAMNEFCKENNFAGWFLTSAKENLNIDEAARFLISQILRTQK 197
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ GD GKTS ++ +V F +Y+ T+GVDF+ K+++ + ++LQ+WDI
Sbjct: 25 YKILVIGDLGTGKTSIIKRYVHQFFSHHYRATIGVDFALKVINWDE--NTLIRLQLWDI 81
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 101 RPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
R E + KILVIGD GKTS ++ +V F +Y+ T+GVDF+ K+++
Sbjct: 17 REQQREHLYKILVIGDLGTGKTSIIKRYVHQFFSHHYRATIGVDFALKVIN 67
>gi|432945329|ref|XP_004083544.1| PREDICTED: ras-related protein Rab-32-like [Oryzias latipes]
Length = 213
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 111/174 (63%), Gaps = 3/174 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+++ V+LQ+WDIA
Sbjct: 14 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVINWDSK--TLVRLQLWDIA 71
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G ++FD+T +FE+V +WKHDLDSK L NG +P +LLA+
Sbjct: 72 GQERFGNMTRVYYKEAVGAFVVFDVTRGATFEAVSKWKHDLDSKVKLTNGNPIPAVLLAN 131
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCD + + C F+ W E S+K+++ ++D+ FLV+ I+ + +
Sbjct: 132 KCDQKKESPNNTPLMDKFCKDTGFLGWFETSAKDNINVDDAARFLVEHILANDK 185
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 161 GTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR 220
G+ S + + +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+++
Sbjct: 4 GSVSECKEYLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVINWDSK--T 61
Query: 221 PVKLQIWDI 229
V+LQ+WDI
Sbjct: 62 LVRLQLWDI 70
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+++
Sbjct: 11 EYLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVIN 56
>gi|410930402|ref|XP_003978587.1| PREDICTED: ras-related protein Rab-32-like [Takifugu rubripes]
Length = 213
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 123/197 (62%), Gaps = 6/197 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD VGK+S + +V+ F++ YK ++GVDF+ K + V+LQ WDIA
Sbjct: 14 FKVLVIGDLGVGKSSVILQYVKKCFMEKYKASIGVDFALKTIEWDPQ--TLVRLQFWDIA 71
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ MSRVYY+ + G +++FD+TN + E+ +WK DLDSK L +G +LP +LLA+
Sbjct: 72 GQERFRKMSRVYYKGAMGALVVFDITNSSTLEAASEWKEDLDSKVCLHSGHLLPAVLLAN 131
Query: 361 KCDLPDR-QVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC---SKRMEE 416
KCD R + + + ++ C + F W E S+K+++ I+++++FLV +++ EE
Sbjct: 132 KCDGEGRDRGDPSWLDGFCEKNGFSGWFETSAKDNINIDEAVHFLVQQMMLLDGGLSGEE 191
Query: 417 EAVERKSSIRLSEETLR 433
E +R R SE+ R
Sbjct: 192 EQRDRIPMRRASEDGPR 208
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGK+S + +V+ F++ YK ++GVDF+ K +
Sbjct: 11 EKLFKVLVIGDLGVGKSSVILQYVKKCFMEKYKASIGVDFALKTI 55
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD VGK+S + +V+ F++ YK ++GVDF+ K + V+LQ WDI
Sbjct: 14 FKVLVIGDLGVGKSSVILQYVKKCFMEKYKASIGVDFALKTIEWDPQ--TLVRLQFWDI 70
>gi|170590099|ref|XP_001899810.1| Ras family protein [Brugia malayi]
gi|158592729|gb|EDP31326.1| Ras family protein [Brugia malayi]
Length = 230
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 114/179 (63%), Gaps = 3/179 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI GD GK+S VQ + N F +YK TVGVDF+T+ L ++LQ+WDI+
Sbjct: 23 FKILIIGDVGTGKSSIVQRYAHNLFTQHYKATVGVDFATRTLIWSDEA--TLRLQLWDIS 80
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQDR+ M+RVYY+++ G I++FD T + +++ ++WK DLDSK L G LPC+L+A+
Sbjct: 81 GQDRFSNMTRVYYKDAHGAIVVFDCTRQNTYDGALRWKSDLDSKITLATGKPLPCILVAN 140
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K DL D ++ ++E + F++ ++ S+K + IED+ L ++I+ K+ + AV
Sbjct: 141 KADL-DNKITSGKLEEYREKGGFLNALKTSAKSNYGIEDAFGLLTEQILEIKKSGQYAV 198
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 87 NSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146
+S P S G+ D + + KIL+IGD GK+S VQ + N F +YK TVGVDF+
Sbjct: 2 DSSQPSTSSNGYVGSSKD-QFLFKILIIGDVGTGKSSIVQRYAHNLFTQHYKATVGVDFA 60
Query: 147 TKLL 150
T+ L
Sbjct: 61 TRTL 64
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ ILI GD GK+S VQ + N F +YK TVGVDF+T+ L ++LQ+WDI
Sbjct: 23 FKILIIGDVGTGKSSIVQRYAHNLFTQHYKATVGVDFATRTLIWSDEA--TLRLQLWDI 79
>gi|351696045|gb|EHA98963.1| Ras-related protein Rab-32 [Heterocephalus glaber]
Length = 209
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 130/197 (65%), Gaps = 11/197 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+LS + R V+LQ+WDI
Sbjct: 10 FRVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLS---WDSRTLVRLQLWDI 66
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +FE+V++WK+DLDSK L +G+ +P +LLA
Sbjct: 67 AGQERFGNMTRVYYKEAVGAFVVFDISRGSTFEAVLKWKNDLDSKVHLPSGSPIPTVLLA 126
Query: 360 SKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR---ME 415
+KCD D ++++ C + F W E S+++++ IE++ + LV+ I+ + + E
Sbjct: 127 NKCDQSRDSGHNPSQMDQFCKDHGFSGWFETSARDNINIEEAAHLLVENILANCKNFPSE 186
Query: 416 EEAVERKSSIRLSEETL 432
+ V++ I+L +ETL
Sbjct: 187 DSDVDK---IKLDQETL 200
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+LS + R V+LQ+WDI
Sbjct: 10 FRVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLS---WDSRTLVRLQLWDI 66
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
++LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+LS
Sbjct: 10 FRVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLS 52
>gi|114052040|ref|NP_001040211.1| Rab-related protein [Bombyx mori]
gi|87248399|gb|ABD36252.1| Rab-related protein [Bombyx mori]
Length = 231
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 117/177 (66%), Gaps = 6/177 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+ ++ Q+WDIA
Sbjct: 25 YKILVIGEWGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNGD--SNTIIRWQLWDIA 82
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD++ +F++VV+WK+DLD+K L +G+ +PC+LLA+
Sbjct: 83 GQERFGNMTRVYYKEAVGAFIVFDVSRVATFDAVVKWKNDLDAKVQLPDGSAIPCILLAN 142
Query: 361 KCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD + +N +++ C + F W E S+KE++ IE++ LV++I+ + ++
Sbjct: 143 KCDQQKEGI-VNSPAKMDEYCREKGFAGWFETSAKENINIEEAARSLVNKILLNDKL 198
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K+L+ ++ Q+WDI
Sbjct: 25 YKILVIGEWGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNGD--SNTIIRWQLWDI 81
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILVIG+ GKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 22 EHLYKILVIGEWGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLN 67
>gi|348565725|ref|XP_003468653.1| PREDICTED: ras-related protein Rab-38-like [Cavia porcellus]
Length = 211
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 121/190 (63%), Gaps = 6/190 (3%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVR 60
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG +
Sbjct: 61 LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPV 120
Query: 354 PCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
+LLA+KCD + V IN +++ C ++ F+ W E S+KE++ I+++ LV I+
Sbjct: 121 SVVLLANKCD-QGKDVLINNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA 179
Query: 411 SKRMEEEAVE 420
++ E++E
Sbjct: 180 NECDLMESIE 189
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVR 60
Query: 224 LQIWDI 229
LQ+WDI
Sbjct: 61 LQLWDI 66
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|328702314|ref|XP_003241872.1| PREDICTED: ras-related protein Rab-38-like isoform 2 [Acyrthosiphon
pisum]
Length = 214
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 117/180 (65%), Gaps = 5/180 (2%)
Query: 232 TLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 291
+L+P + + IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K L
Sbjct: 6 SLAPTEY-LFKILVIGELGTGKTSIIKRYVHKFFSQHYRATIGVDFALKSLEWD--SNTV 62
Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA 351
++LQ+WDIAGQ+R+ M+RVYY+++ G ++FD+T +FE+V +WK DLD+K L++G+
Sbjct: 63 IRLQLWDIAGQERFGNMTRVYYKDALGAFVVFDVTRPATFEAVAKWKQDLDAKVSLEDGS 122
Query: 352 MLPCLLLASKCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+PC+LLA+KCD + I +++ C + F +W E S+KE++ I+D+ LV +I+
Sbjct: 123 PIPCVLLANKCDETKEGMVNSIAKMDEFCKENMFTAWYETSAKENVHIDDAAKTLVTQIL 182
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ IL+ G+ GKTS ++ +V F +Y+ T+GVDF+ K L ++LQ+WDI
Sbjct: 14 FKILVIGELGTGKTSIIKRYVHKFFSQHYRATIGVDFALKSLEWD--SNTVIRLQLWDI 70
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KILVIG+ GKTS ++ +V F +Y+ T+GVDF+ K L
Sbjct: 11 EYLFKILVIGELGTGKTSIIKRYVHKFFSQHYRATIGVDFALKSL 55
>gi|27819805|gb|AAO24951.1| RE56408p [Drosophila melanogaster]
Length = 222
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 113/176 (64%), Gaps = 4/176 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G GKTS+++ +V F NY+ T+GVDF+ K+L V+LQ+WDIA
Sbjct: 20 YKILVIGGLGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLQWD--ANTIVRLQLWDIA 77
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +F+ V +WK DLDSK L +G+ +PC+LLA+
Sbjct: 78 GQERFGNMTRVYYKEAVGAFIVFDVTRSGTFDCVSKWKEDLDSKVQLPDGSPIPCILLAN 137
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCD + + + +++ + F W E S+KE++ I+++ LV++I+ + ++
Sbjct: 138 KCDQEKQGIITQPEKMDEYVRENGFAGWFETSAKENINIDEAARALVNKILINDKL 193
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 31/45 (68%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KILVIG GKTS+++ +V F NY+ T+GVDF+ K+L
Sbjct: 17 EHLYKILVIGGLGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVL 61
>gi|323450441|gb|EGB06322.1| hypothetical protein AURANDRAFT_13379, partial [Aureococcus
anophagefferens]
Length = 177
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 108/172 (62%), Gaps = 16/172 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP----------- 291
+L+ GD GKTS ++ +V N F ++++ TVGVDF+ K L+ + G
Sbjct: 2 VLVLGDPATGKTSIIKRYVHNFFSNHHRTTVGVDFALKQLTVGRRAGAARVPPRVATARD 61
Query: 292 -----VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCI 346
V+LQ+WDIAGQDR+ ++RVYY+++ G +++D++ ++F+++V+WK ++DSK
Sbjct: 62 RRDTTVRLQLWDIAGQDRFGAIARVYYKDAFGAFLVYDISRPETFKTIVKWKDEIDSKVH 121
Query: 347 LDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398
L NG LP +LLA+KCDL D ++ E++ C + F+ W E S+K + I+
Sbjct: 122 LPNGMALPVVLLANKCDLEDVAIDRQELDDFCRSHGFIGWFETSAKADVNID 173
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 16/73 (21%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP----------- 221
+L+ GD GKTS ++ +V N F ++++ TVGVDF+ K L+ + G
Sbjct: 2 VLVLGDPATGKTSIIKRYVHNFFSNHHRTTVGVDFALKQLTVGRRAGAARVPPRVATARD 61
Query: 222 -----VKLQIWDI 229
V+LQ+WDI
Sbjct: 62 RRDTTVRLQLWDI 74
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG 157
K+LV+GD GKTS ++ +V N F ++++ TVGVDF+ K L+ + G
Sbjct: 1 KVLVLGDPATGKTSIIKRYVHNFFSNHHRTTVGVDFALKQLTVGRRAG 48
>gi|341903548|gb|EGT59483.1| CBN-GLO-1 protein [Caenorhabditis brenneri]
Length = 212
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 120/195 (61%), Gaps = 6/195 (3%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
+Y +L+ GD VGKTS ++ FV N F NYK T+GVDF+ K+L + V LQIWDI
Sbjct: 11 SYKVLVIGDPGVGKTSIIRRFVHNVFSSNYKTTIGVDFALKILPVDE--NTVVHLQIWDI 68
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
+GQDRY M+RVYY+++ II+ D T ++ E ++WK DLD K L +G+ +P +LLA
Sbjct: 69 SGQDRYGVMTRVYYKDAHAAIIVLDSTRERTIEGALRWKTDLDQKVTLADGSPVPAILLA 128
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
+KCD+ D Q+ +++ + F+ S+KE + IE++ FL + +I +++ + V
Sbjct: 129 NKCDI-DNQLGDDKLYDLETNNGFVGSFRTSAKESVGIEEAFKFLANTVISTEQGGQYDV 187
Query: 420 ---ERKSSIRLSEET 431
R+ ++ L + +
Sbjct: 188 PFLNREGNVNLDDNS 202
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
SY +L+ GD VGKTS ++ FV N F NYK T+GVDF+ K+L + V LQIWDI
Sbjct: 11 SYKVLVIGDPGVGKTSIIRRFVHNVFSSNYKTTIGVDFALKILPVDE--NTVVHLQIWDI 68
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 31/41 (75%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
K+LVIGD VGKTS ++ FV N F NYK T+GVDF+ K+L
Sbjct: 13 KVLVIGDPGVGKTSIIRRFVHNVFSSNYKTTIGVDFALKIL 53
>gi|167518365|ref|XP_001743523.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778622|gb|EDQ92237.1| predicted protein [Monosiga brevicollis MX1]
Length = 206
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 122/200 (61%), Gaps = 12/200 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+ GKTS ++ +V F +YK T+GVDF+ K+L+ V+LQ+WDIA
Sbjct: 12 FKVLVVGEIGTGKTSIIKRYVHQMFSSHYKATIGVDFALKVLNLDD--DTIVRLQLWDIA 69
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK D+D+K L +G+ +P +LLA+
Sbjct: 70 GQERFGNMTRVYYKEAVGAFIVFDVTRVSTFEAVQKWKSDIDNKVFLPDGSKIPVVLLAN 129
Query: 361 KCDLPDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
KCD+ + N ++ C + F W E S+KE++ I+ + LV +I+ E A
Sbjct: 130 KCDMAKEGLVKNGAAMDKYCEEKGFAGWFETSAKENVNIDLAAQELVKKIL---EHEPSA 186
Query: 419 VERKSSIRLSEETLRDDQPK 438
+E+ +I L E D+PK
Sbjct: 187 LEKNDTIDLDE-----DKPK 201
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ G+ GKTS ++ +V F +YK T+GVDF+ K+L+ V+LQ+WDI
Sbjct: 12 FKVLVVGEIGTGKTSIIKRYVHQMFSSHYKATIGVDFALKVLNLDD--DTIVRLQLWDI 68
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LV+G+ GKTS ++ +V F +YK T+GVDF+ K+L+
Sbjct: 9 EHLFKVLVVGEIGTGKTSIIKRYVHQMFSSHYKATIGVDFALKVLN 54
>gi|403287827|ref|XP_003935127.1| PREDICTED: ras-related protein Rab-38 [Saimiri boliviensis
boliviensis]
Length = 211
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 121/190 (63%), Gaps = 6/190 (3%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPE--TVVR 60
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG +
Sbjct: 61 LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPV 120
Query: 354 PCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
+LLA+KCD + V +N +++ C ++ F+ W E S+KE++ I+++ LV I+
Sbjct: 121 SVVLLANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA 179
Query: 411 SKRMEEEAVE 420
++ E++E
Sbjct: 180 NECDLMESIE 189
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPE--TVVR 60
Query: 224 LQIWDI 229
LQ+WDI
Sbjct: 61 LQLWDI 66
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|296216859|ref|XP_002754753.1| PREDICTED: ras-related protein Rab-38-like [Callithrix jacchus]
Length = 211
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 121/190 (63%), Gaps = 6/190 (3%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPE--TVVR 60
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG +
Sbjct: 61 LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPV 120
Query: 354 PCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
+LLA+KCD + V +N +++ C ++ F+ W E S+KE++ I+++ LV I+
Sbjct: 121 SVVLLANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA 179
Query: 411 SKRMEEEAVE 420
++ E++E
Sbjct: 180 NECDLMESIE 189
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPE--TVVR 60
Query: 224 LQIWDI 229
LQ+WDI
Sbjct: 61 LQLWDI 66
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|345787949|ref|XP_850212.2| PREDICTED: ras-related protein Rab-38 [Canis lupus familiaris]
Length = 211
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 121/190 (63%), Gaps = 6/190 (3%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVR 60
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG +
Sbjct: 61 LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVTKWKNDLDSKLSLPNGKPV 120
Query: 354 PCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
+LLA+KCD + V IN +++ C ++ F+ W E S+KE++ I+++ LV I+
Sbjct: 121 SVVLLANKCD-QGKDVLINNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA 179
Query: 411 SKRMEEEAVE 420
++ E++E
Sbjct: 180 NECDLMESIE 189
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVR 60
Query: 224 LQIWDI 229
LQ+WDI
Sbjct: 61 LQLWDI 66
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|109108201|ref|XP_001104269.1| PREDICTED: ras-related protein Rab-38 [Macaca mulatta]
gi|402894879|ref|XP_003910569.1| PREDICTED: ras-related protein Rab-38 [Papio anubis]
gi|355566930|gb|EHH23309.1| hypothetical protein EGK_06752 [Macaca mulatta]
Length = 211
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 121/190 (63%), Gaps = 6/190 (3%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPE--TVVR 60
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG +
Sbjct: 61 LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPV 120
Query: 354 PCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
+LLA+KCD + V +N +++ C ++ F+ W E S+KE++ I+++ LV I+
Sbjct: 121 SVVLLANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA 179
Query: 411 SKRMEEEAVE 420
++ E++E
Sbjct: 180 NECDLMESIE 189
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPE--TVVR 60
Query: 224 LQIWDI 229
LQ+WDI
Sbjct: 61 LQLWDI 66
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|444728470|gb|ELW68927.1| Ras-related protein Rab-38 [Tupaia chinensis]
Length = 211
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 121/190 (63%), Gaps = 6/190 (3%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHREHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVR 60
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG +
Sbjct: 61 LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPV 120
Query: 354 PCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
+LLA+KCD + V +N +++ C ++ F+ W E S+KE++ I+++ LV I+
Sbjct: 121 SVVLLANKCD-QGKDVLLNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA 179
Query: 411 SKRMEEEAVE 420
++ E++E
Sbjct: 180 NECDLMESIE 189
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHREHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVR 60
Query: 224 LQIWDI 229
LQ+WDI
Sbjct: 61 LQLWDI 66
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|71994817|ref|NP_001024837.1| Protein GLO-1 [Caenorhabditis elegans]
gi|63108011|emb|CAE17932.2| Protein GLO-1 [Caenorhabditis elegans]
gi|66170981|gb|AAY42967.1| Rab GTPase GLO-1 [Caenorhabditis elegans]
Length = 212
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 120/195 (61%), Gaps = 6/195 (3%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
+Y +L+ GD VGKTS ++ FV N F NYK T+GVDF+ K+L + V LQIWDI
Sbjct: 11 SYKVLVIGDPGVGKTSIIRRFVHNVFSSNYKTTIGVDFALKILPVDE--NTVVHLQIWDI 68
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
+GQDRY M+RVYY+++ II+ D T ++ E ++WK DLD K L +G+ +P +LLA
Sbjct: 69 SGQDRYGVMTRVYYKDAHAAIIVLDSTRERTIEGALRWKTDLDQKVTLADGSPVPAILLA 128
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
+KCD+ D ++ +++ + F+ S+KE + IE++ FL + +I +++ + V
Sbjct: 129 NKCDI-DNKLGDDKLYDLETNNGFVGSFRTSAKESVGIEEAFKFLANTVISTEQGGQYDV 187
Query: 420 ---ERKSSIRLSEET 431
R+ ++ L + T
Sbjct: 188 PFMNREGNVNLDDNT 202
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
SY +L+ GD VGKTS ++ FV N F NYK T+GVDF+ K+L + V LQIWDI
Sbjct: 11 SYKVLVIGDPGVGKTSIIRRFVHNVFSSNYKTTIGVDFALKILPVDE--NTVVHLQIWDI 68
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 31/41 (75%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
K+LVIGD VGKTS ++ FV N F NYK T+GVDF+ K+L
Sbjct: 13 KVLVIGDPGVGKTSIIRRFVHNVFSSNYKTTIGVDFALKIL 53
>gi|354498049|ref|XP_003511128.1| PREDICTED: ras-related protein Rab-38-like [Cricetulus griseus]
gi|344250686|gb|EGW06790.1| Ras-related protein Rab-38 [Cricetulus griseus]
Length = 211
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 121/190 (63%), Gaps = 6/190 (3%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPE--TVVR 60
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG +
Sbjct: 61 LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPV 120
Query: 354 PCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
+LLA+KCD + V +N +++ C ++ F+ W E S+KE++ I+++ LV I+
Sbjct: 121 SVVLLANKCD-QGKDVLVNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA 179
Query: 411 SKRMEEEAVE 420
++ E++E
Sbjct: 180 NECDLIESIE 189
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPE--TVVR 60
Query: 224 LQIWDI 229
LQ+WDI
Sbjct: 61 LQLWDI 66
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|432108510|gb|ELK33226.1| Ras-related protein Rab-38 [Myotis davidii]
Length = 211
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 118/183 (64%), Gaps = 6/183 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+LQ+WDIA
Sbjct: 10 YKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--DTVVRLQLWDIA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG + +LLA+
Sbjct: 68 GQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVTKWKNDLDSKLSLPNGKPVSVVLLAN 127
Query: 361 KCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
KCD + V +N +++ C ++ F+ W E S+KE++ I+++ LV I+ ++ E
Sbjct: 128 KCD-QGKDVLLNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANECELME 186
Query: 418 AVE 420
++E
Sbjct: 187 SIE 189
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+LQ+WDI
Sbjct: 10 YKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--DTVVRLQLWDI 66
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 101 RPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ ++ E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 2 QAANKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|21955138|ref|NP_665717.1| ras-related protein Rab-38 [Rattus norvegicus]
gi|206543|gb|AAA42000.1| rab-related GTP-binding protein [Rattus norvegicus]
gi|47125439|gb|AAH70513.1| RAB38, member RAS oncogene family [Rattus norvegicus]
gi|149069033|gb|EDM18585.1| Rab38, member of RAS oncogene family [Rattus norvegicus]
Length = 211
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 121/190 (63%), Gaps = 6/190 (3%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 TPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVR 60
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG +
Sbjct: 61 LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPV 120
Query: 354 PCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
+LLA+KCD + V +N +++ C ++ F+ W E S+KE++ I+++ LV I+
Sbjct: 121 SVVLLANKCD-QGKDVLVNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA 179
Query: 411 SKRMEEEAVE 420
++ E++E
Sbjct: 180 NECDFIESIE 189
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 166 IQTPS----YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 221
+QTP Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 1 MQTPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETV 58
Query: 222 VKLQIWDI 229
V+LQ+WDI
Sbjct: 59 VRLQLWDI 66
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|348519068|ref|XP_003447053.1| PREDICTED: ras-related protein Rab-38-like [Oreochromis niloticus]
Length = 207
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 118/183 (64%), Gaps = 9/183 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L ++LQ+WDIA
Sbjct: 7 FKVLVIGDLGVGKTSIIKRYVHQIFSQHYRATIGVDFALKVLQWD--SNTVIRLQLWDIA 64
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY M+RVYY+ + G +++FD+T +F++V++WK DLDSK L++G +P +LLA+
Sbjct: 65 GQERYGNMTRVYYREAVGALVVFDVTRASTFDAVLKWKDDLDSKVTLNHGRPVPAVLLAN 124
Query: 361 KCD-LPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D L +Q +++A C + F+ W E S+KE+ IE++ LV+ I+ R EE V
Sbjct: 125 KSDQLVSQQ---PKLDAFCRENGFVGWFETSAKENTNIEEAARCLVEHIL---RNEESLV 178
Query: 420 ERK 422
+
Sbjct: 179 TER 181
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
Q + +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L ++LQ+
Sbjct: 3 QELLFKVLVIGDLGVGKTSIIKRYVHQIFSQHYRATIGVDFALKVLQWD--SNTVIRLQL 60
Query: 227 WDI 229
WDI
Sbjct: 61 WDI 63
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 4 ELLFKVLVIGDLGVGKTSIIKRYVHQIFSQHYRATIGVDFALKVL 48
>gi|147903317|ref|NP_001090131.1| RAB32, member RAS oncogene family [Xenopus laevis]
gi|80477119|gb|AAI08513.1| MGC130912 protein [Xenopus laevis]
Length = 222
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 131/225 (58%), Gaps = 23/225 (10%)
Query: 237 QIPTYP--------ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG 288
QIP P +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+++
Sbjct: 10 QIPRAPERKEYLFKVLVIGELGVGKTSVIKRYVHQLFSQHYRATIGVDFALKVINWDN-- 67
Query: 289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD 348
V+LQ+WDIAGQ+R+ M+RVYY+ + G ++FD+T +FE++ +WK DLDSK L
Sbjct: 68 NTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDVTRGSTFEAITKWKSDLDSKVFLP 127
Query: 349 NGAMLPCLLLASKCDLPDRQVEI---NEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLV 405
+G +P +LLA+KCD ++ I ++++ C + F +W E S+K+++ I+++ LV
Sbjct: 128 SGGPIPAVLLANKCD-QKKENSIQSPHQMDLFCKENGFAAWFETSAKDNMNIDEAARCLV 186
Query: 406 DRIICSKRMEEEAVERKSSIRLSEETLRDDQPKKLVPADKVSTYC 450
+ I+ + + S+R+ +ET+ PA+ S C
Sbjct: 187 ENILANAKNFPVEENDDGSVRVDQETM---------PAESKSQCC 222
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 100 PR-PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
PR P E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+++
Sbjct: 12 PRAPERKEYLFKVLVIGELGVGKTSVIKRYVHQLFSQHYRATIGVDFALKVIN 64
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+++ V+LQ+WDI
Sbjct: 22 FKVLVIGELGVGKTSVIKRYVHQLFSQHYRATIGVDFALKVINWDN--NTLVRLQLWDI 78
>gi|355752522|gb|EHH56642.1| hypothetical protein EGM_06097 [Macaca fascicularis]
Length = 244
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 118/183 (64%), Gaps = 6/183 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+LQ+WDIA
Sbjct: 43 YKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPE--TVVRLQLWDIA 100
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG + +LLA+
Sbjct: 101 GQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPVSVVLLAN 160
Query: 361 KCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
KCD + V +N +++ C ++ F+ W E S+KE++ I+++ LV I+ ++ E
Sbjct: 161 KCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANECDLME 219
Query: 418 AVE 420
++E
Sbjct: 220 SIE 222
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+LQ+WDI
Sbjct: 43 YKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPE--TVVRLQLWDI 99
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 40 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 84
>gi|196009291|ref|XP_002114511.1| hypothetical protein TRIADDRAFT_27795 [Trichoplax adhaerens]
gi|190583530|gb|EDV23601.1| hypothetical protein TRIADDRAFT_27795 [Trichoplax adhaerens]
Length = 184
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 109/172 (63%), Gaps = 5/172 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ GD VGKTS ++ +V F Y+ T+GVDF+ K++ K V+LQ+WDIA
Sbjct: 11 YKILVIGDLGVGKTSIIKRYVHQFFSTQYRATIGVDFALKVIDWKD-SNSVVRLQLWDIA 69
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD++ +F++V +WK DLDSK + +P +LLA+
Sbjct: 70 GQERFGNMTRVYYREAVGAFIVFDISRASTFDAVQKWKSDLDSKVTIGEDMAIPVVLLAN 129
Query: 361 KCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCD+ D + N ++ C + F W E S+KE++ I+++ NFLV ++
Sbjct: 130 KCDI-DMESLANFRGTLDNYCKEKGFAGWFETSAKENINIDEAANFLVSKVF 180
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y IL+ GD VGKTS ++ +V F Y+ T+GVDF+ K++ K V+LQ+WDI
Sbjct: 11 YKILVIGDLGVGKTSIIKRYVHQFFSTQYRATIGVDFALKVIDWKD-SNSVVRLQLWDI 68
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 153
E + KILVIGD VGKTS ++ +V F Y+ T+GVDF+ K++ K
Sbjct: 8 EYLYKILVIGDLGVGKTSIIKRYVHQFFSTQYRATIGVDFALKVIDWK 55
>gi|149719243|ref|XP_001489548.1| PREDICTED: ras-related protein Rab-38-like [Equus caballus]
Length = 211
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 121/190 (63%), Gaps = 6/190 (3%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLQWDP--ETVVR 60
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG +
Sbjct: 61 LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVTKWKNDLDSKLSLPNGKPI 120
Query: 354 PCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
+LLA+KCD + V +N +++ C ++ F+ W E S+KE++ I+++ LV I+
Sbjct: 121 SVVLLANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA 179
Query: 411 SKRMEEEAVE 420
++ E++E
Sbjct: 180 NECDLMESIE 189
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLQWDP--ETVVR 60
Query: 224 LQIWDI 229
LQ+WDI
Sbjct: 61 LQLWDI 66
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|291384118|ref|XP_002708691.1| PREDICTED: RAB38 [Oryctolagus cuniculus]
Length = 211
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 121/190 (63%), Gaps = 6/190 (3%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVR 60
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG +
Sbjct: 61 LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPV 120
Query: 354 PCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
+LLA+KCD + V +N +++ C ++ F+ W E S+KE++ I+++ LV I+
Sbjct: 121 SVVLLANKCDQA-KDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA 179
Query: 411 SKRMEEEAVE 420
++ E++E
Sbjct: 180 NECDLMESIE 189
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVR 60
Query: 224 LQIWDI 229
LQ+WDI
Sbjct: 61 LQLWDI 66
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|21105857|ref|NP_082514.4| ras-related protein Rab-38 [Mus musculus]
gi|46577080|sp|Q8QZZ8.1|RAB38_MOUSE RecName: Full=Ras-related protein Rab-38
gi|20087023|gb|AAL38663.1| RAB38 [Mus musculus]
gi|20147508|gb|AAM12528.1| RAB38 [Mus musculus]
gi|26336811|dbj|BAC32089.1| unnamed protein product [Mus musculus]
gi|26344095|dbj|BAC35704.1| unnamed protein product [Mus musculus]
gi|58476762|gb|AAH89578.1| RAB38, member of RAS oncogene family [Mus musculus]
gi|74227083|dbj|BAE38335.1| unnamed protein product [Mus musculus]
gi|112293037|dbj|BAF02896.1| Rab38 [Mus musculus]
gi|148674846|gb|EDL06793.1| Rab38, member of RAS oncogene family [Mus musculus]
Length = 211
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 121/190 (63%), Gaps = 6/190 (3%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 TPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPE--TVVR 60
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG +
Sbjct: 61 LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPV 120
Query: 354 PCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
+LLA+KCD + V +N +++ C ++ F+ W E S+KE++ I+++ LV I+
Sbjct: 121 SVVLLANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA 179
Query: 411 SKRMEEEAVE 420
++ E++E
Sbjct: 180 NECDLLESIE 189
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 166 IQTPS----YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 221
+QTP Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 1 MQTPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETV 58
Query: 222 VKLQIWDI 229
V+LQ+WDI
Sbjct: 59 VRLQLWDI 66
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|11641237|ref|NP_071732.1| ras-related protein Rab-38 [Homo sapiens]
gi|114639714|ref|XP_508683.2| PREDICTED: ras-related protein Rab-38 [Pan troglodytes]
gi|297689915|ref|XP_002822380.1| PREDICTED: ras-related protein Rab-38 [Pongo abelii]
gi|397526221|ref|XP_003833034.1| PREDICTED: ras-related protein Rab-38 [Pan paniscus]
gi|12230516|sp|P57729.1|RAB38_HUMAN RecName: Full=Ras-related protein Rab-38; AltName: Full=Melanoma
antigen NY-MEL-1
gi|11119734|gb|AAG30731.1| Rab-related GTP-binding protein [Homo sapiens]
gi|16041835|gb|AAH15808.1| RAB38, member RAS oncogene family [Homo sapiens]
gi|32880027|gb|AAP88844.1| RAB38, member RAS oncogene family [Homo sapiens]
gi|61360935|gb|AAX41956.1| RAB38 member RAS oncogene family [synthetic construct]
gi|61360941|gb|AAX41957.1| RAB38 member RAS oncogene family [synthetic construct]
gi|61360949|gb|AAX41958.1| RAB38 member RAS oncogene family [synthetic construct]
gi|74418830|gb|ABA03166.1| RAB38, member RAS oncogene family [Homo sapiens]
gi|119579769|gb|EAW59365.1| RAB38, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119579770|gb|EAW59366.1| RAB38, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|123980446|gb|ABM82052.1| RAB38, member RAS oncogene family [synthetic construct]
gi|123995259|gb|ABM85231.1| RAB38, member RAS oncogene family [synthetic construct]
gi|410255632|gb|JAA15783.1| RAB38, member RAS oncogene family [Pan troglodytes]
gi|410332977|gb|JAA35435.1| RAB38, member RAS oncogene family [Pan troglodytes]
Length = 211
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 121/190 (63%), Gaps = 6/190 (3%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPE--TVVR 60
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG +
Sbjct: 61 LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPV 120
Query: 354 PCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
+LLA+KCD + V +N +++ C ++ F+ W E S+KE++ I+++ LV I+
Sbjct: 121 SVVLLANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA 179
Query: 411 SKRMEEEAVE 420
++ E++E
Sbjct: 180 NECDLMESIE 189
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPE--TVVR 60
Query: 224 LQIWDI 229
LQ+WDI
Sbjct: 61 LQLWDI 66
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|332210934|ref|XP_003254567.1| PREDICTED: ras-related protein Rab-38 [Nomascus leucogenys]
Length = 211
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 121/190 (63%), Gaps = 6/190 (3%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHREHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPE--TVVR 60
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG +
Sbjct: 61 LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPV 120
Query: 354 PCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
+LLA+KCD + V +N +++ C ++ F+ W E S+KE++ I+++ LV I+
Sbjct: 121 SVVLLANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA 179
Query: 411 SKRMEEEAVE 420
++ E++E
Sbjct: 180 NECDLMESIE 189
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHREHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPE--TVVR 60
Query: 224 LQIWDI 229
LQ+WDI
Sbjct: 61 LQLWDI 66
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|348533005|ref|XP_003453996.1| PREDICTED: ras-related protein Rab-32-like [Oreochromis niloticus]
Length = 230
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 120/186 (64%), Gaps = 10/186 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS--HKKYGGRPVKLQIWDIA 300
+L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L+ HK V+LQ+WDIA
Sbjct: 9 VLVIGDLGVGKTSIIKRYVHQVFSQHYRATIGVDFALKVLNWDHKTV----VRLQLWDIA 64
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY M+RVYY+ + G +++FD+T +F+++++WK DLDSK L NG +P +LLA+
Sbjct: 65 GQERYGNMTRVYYREAVGALVVFDMTRLSTFQAILKWKGDLDSKVALSNGRPVPAVLLAN 124
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
KCD + ++ ++E +Y F+ W E S+K++ I+ ++ LV I+ + EE A
Sbjct: 125 KCDQRRHGLCPKLPKLENFSKEYGFVDWYETSAKDNTNIDAAITCLVKSIMSVE--EERA 182
Query: 419 VERKSS 424
+ +S
Sbjct: 183 LGEATS 188
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 6/59 (10%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS--HKKYGGRPVKLQIWDI 229
+L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L+ HK V+LQ+WDI
Sbjct: 9 VLVIGDLGVGKTSIIKRYVHQVFSQHYRATIGVDFALKVLNWDHKTV----VRLQLWDI 63
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E +LK+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 4 ERLLKVLVIGDLGVGKTSIIKRYVHQVFSQHYRATIGVDFALKVLN 49
>gi|426370059|ref|XP_004051994.1| PREDICTED: ras-related protein Rab-38 [Gorilla gorilla gorilla]
Length = 211
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 122/192 (63%), Gaps = 10/192 (5%)
Query: 236 IQIP----TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 291
+Q+P Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 1 MQVPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPE--TV 58
Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA 351
V+LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG
Sbjct: 59 VRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGK 118
Query: 352 MLPCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ +LLA+KCD + V +N +++ C ++ F+ W E S+KE++ I+++ LV I
Sbjct: 119 PVSVVLLANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHI 177
Query: 409 ICSKRMEEEAVE 420
+ ++ E++E
Sbjct: 178 LANECDLMESIE 189
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 165 PIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+L
Sbjct: 4 PHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPE--TVVRL 61
Query: 225 QIWDI 229
Q+WDI
Sbjct: 62 QLWDI 66
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|395814706|ref|XP_003780884.1| PREDICTED: ras-related protein Rab-38 [Otolemur garnettii]
Length = 211
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 121/190 (63%), Gaps = 6/190 (3%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHREHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVR 60
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG +
Sbjct: 61 LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPV 120
Query: 354 PCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
+LLA+KCD + V +N +++ C ++ F+ W E S+KE++ I+++ LV I+
Sbjct: 121 SVVLLANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA 179
Query: 411 SKRMEEEAVE 420
++ E++E
Sbjct: 180 NECDLIESIE 189
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHREHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVR 60
Query: 224 LQIWDI 229
LQ+WDI
Sbjct: 61 LQLWDI 66
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|330792796|ref|XP_003284473.1| Rab GTPase [Dictyostelium purpureum]
gi|325085616|gb|EGC39020.1| Rab GTPase [Dictyostelium purpureum]
Length = 252
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 107/169 (63%), Gaps = 2/169 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ GD VGKTS ++ + F NYK T+GVDFS K + +K + V LQ+WDIA
Sbjct: 52 YKVLLIGDYAVGKTSLIKRYCTGIFSPNYKLTIGVDFSVKDIEWEK--NKVVSLQLWDIA 109
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +R+ M+RVYY+ + II+FDL+ +F++V +W+ D++SK +L N +P LLLA+
Sbjct: 110 GHERFGTMTRVYYRYAIAAIIVFDLSRPSTFDAVTKWREDVNSKVVLANQEPIPVLLLAN 169
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
K DLP V+ ++ C + NF+ W S+ + I+++M FL +I+
Sbjct: 170 KSDLPTSYVDSEMLDNFCKENNFIGWYATSALNNANIDEAMRFLTKKIL 218
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
+ ++ Y +L+ GD VGKTS ++ + F NYK T+GVDFS K + +K + V
Sbjct: 45 AEVEKHLYKVLLIGDYAVGKTSLIKRYCTGIFSPNYKLTIGVDFSVKDIEWEK--NKVVS 102
Query: 224 LQIWDI 229
LQ+WDI
Sbjct: 103 LQLWDI 108
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 154
K+L+IGD VGKTS ++ + F NYK T+GVDFS K + +K
Sbjct: 53 KVLLIGDYAVGKTSLIKRYCTGIFSPNYKLTIGVDFSVKDIEWEK 97
>gi|33150768|gb|AAP97262.1|AF136172_1 rab-related GTP-binding protein [Homo sapiens]
Length = 212
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 121/190 (63%), Gaps = 6/190 (3%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVR 60
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG +
Sbjct: 61 LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPV 120
Query: 354 PCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
+LLA+KCD + V +N +++ C ++ F+ W E S+KE++ I+++ LV I+
Sbjct: 121 SVVLLANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA 179
Query: 411 SKRMEEEAVE 420
++ E++E
Sbjct: 180 NECDLMESIE 189
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVR 60
Query: 224 LQIWDI 229
LQ+WDI
Sbjct: 61 LQLWDI 66
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|350588369|ref|XP_003482633.1| PREDICTED: ras-related protein Rab-38-like [Sus scrofa]
Length = 211
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 122/192 (63%), Gaps = 10/192 (5%)
Query: 236 IQIP----TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 291
+Q+P Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 1 MQVPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETV 58
Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA 351
V+LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG
Sbjct: 59 VRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVTKWKNDLDSKLSLPNGK 118
Query: 352 MLPCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ +LLA+KCD + V +N +++ C ++ F+ W E S+KE++ I+++ LV I
Sbjct: 119 PVSVVLLANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHI 177
Query: 409 ICSKRMEEEAVE 420
+ ++ E++E
Sbjct: 178 LANECDLMESIE 189
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 165 PIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+L
Sbjct: 4 PHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVRL 61
Query: 225 QIWDI 229
Q+WDI
Sbjct: 62 QLWDI 66
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|395521174|ref|XP_003764693.1| PREDICTED: ras-related protein Rab-38-like [Sarcophilus harrisii]
Length = 211
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 115/183 (62%), Gaps = 6/183 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y + + GD VGKTS +Q +V F +Y+ T+GVDF+ K+L V+LQ+WDIA
Sbjct: 10 YKLPVIGDLGVGKTSIIQRYVHQNFSSHYRATIGVDFALKVLQWDP--ETVVRLQLWDIA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK DLDSK L NG + +LLA+
Sbjct: 68 GQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVTKWKSDLDSKLTLPNGKPVSAVLLAN 127
Query: 361 KCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
KCD + V +N +++ C + F+ W E S+KE++ I+++ LV I+ ++ +
Sbjct: 128 KCD-QGKDVLLNNGLKMDQFCKENGFVGWFETSAKENINIDEASRCLVKHILANESHLTQ 186
Query: 418 AVE 420
+VE
Sbjct: 187 SVE 189
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y + + GD VGKTS +Q +V F +Y+ T+GVDF+ K+L V+LQ+WDI
Sbjct: 10 YKLPVIGDLGVGKTSIIQRYVHQNFSSHYRATIGVDFALKVLQWDP--ETVVRLQLWDI 66
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Query: 98 FEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+PR E + K+ VIGD VGKTS +Q +V F +Y+ T+GVDF+ K+L
Sbjct: 3 LQPR----EHLYKLPVIGDLGVGKTSIIQRYVHQNFSSHYRATIGVDFALKVL 51
>gi|324518284|gb|ADY47060.1| Ras-related protein Rab-32 [Ascaris suum]
Length = 231
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 127/208 (61%), Gaps = 6/208 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI GD GK+S V+ +V N F YK TVGVDF+ K+L ++LQIWDI+
Sbjct: 22 FKILIIGDVGTGKSSIVRRYVHNLFNQYYKATVGVDFAMKVLVWDV--DTLLRLQIWDIS 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQDR+ M+RVYY+++ G +I+FD T + +++ ++WK DLD+K L NG +P +L+A+
Sbjct: 80 GQDRFGNMTRVYYKDAHGALIVFDATRQATYDGALRWKADLDNKVCLANGKPVPAVLIAN 139
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV- 419
KCD+ ++ E + + C + +F+ S+K++ IE+ FL + I+ +++ + +
Sbjct: 140 KCDIENKVTE-DLLAEYCKKESFIGAFRASAKDNFGIEEGFRFLAEHIVATEKQGQYEIP 198
Query: 420 --ERKSSIRLSEETLRDDQPKKLVPADK 445
+R ++R ++ + ++L +++
Sbjct: 199 LFQRDGNVRKLGSSMATNSQRRLFESER 226
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ ILI GD GK+S V+ +V N F YK TVGVDF+ K+L ++LQIWDI
Sbjct: 22 FKILIIGDVGTGKSSIVRRYVHNLFNQYYKATVGVDFAMKVLVWDV--DTLLRLQIWDI 78
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 9/60 (15%)
Query: 100 PRPSDAET---------VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P+P+ + T + KIL+IGD GK+S V+ +V N F YK TVGVDF+ K+L
Sbjct: 4 PQPTTSSTQKSLTKKQLLFKILIIGDVGTGKSSIVRRYVHNLFNQYYKATVGVDFAMKVL 63
>gi|344293786|ref|XP_003418601.1| PREDICTED: ras-related protein Rab-38-like [Loxodonta africana]
Length = 211
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 118/189 (62%), Gaps = 4/189 (2%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APNKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVR 60
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK DLDSK L NG +
Sbjct: 61 LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKSDLDSKLTLPNGKPV 120
Query: 354 PCLLLASKCDLPDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
+LLA+KCD + N +++ C ++ F+ W E S+KE++ I+++ LV I+ +
Sbjct: 121 SAVLLANKCDQGKDMLVNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILAN 180
Query: 412 KRMEEEAVE 420
+ E++E
Sbjct: 181 ECDLMESIE 189
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APNKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVR 60
Query: 224 LQIWDI 229
LQ+WDI
Sbjct: 61 LQLWDI 66
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 5 NKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|301779279|ref|XP_002925057.1| PREDICTED: ras-related protein Rab-38-like [Ailuropoda melanoleuca]
gi|281337581|gb|EFB13165.1| hypothetical protein PANDA_014483 [Ailuropoda melanoleuca]
Length = 211
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 121/190 (63%), Gaps = 6/190 (3%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVR 60
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG +
Sbjct: 61 LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVTKWKNDLDSKLSLPNGKPV 120
Query: 354 PCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
+LLA+KCD + V +N +++ C ++ F+ W E S+KE++ I+++ LV I+
Sbjct: 121 SVVLLANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA 179
Query: 411 SKRMEEEAVE 420
++ E++E
Sbjct: 180 NECDLMESIE 189
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVR 60
Query: 224 LQIWDI 229
LQ+WDI
Sbjct: 61 LQLWDI 66
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|440804650|gb|ELR25527.1| Rasrelated protein Rab-32, putative [Acanthamoeba castellanii str.
Neff]
Length = 238
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 117/187 (62%), Gaps = 14/187 (7%)
Query: 234 SPIQIPT-------YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 286
+P ++P Y IL+ G+ GKTS ++ + N+F DNYK+T+GVDF+ K L +
Sbjct: 19 APKELPAAQKKEFLYKILVVGNMGTGKTSIIKRYCDNEFSDNYKSTIGVDFALKSL---E 75
Query: 287 YGGRP-VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTN--RKSFESVVQWKHDLDS 343
+G V LQ+WDIAGQ+RY ++RVYY+++ G ++ DL ++S + V +WK D+DS
Sbjct: 76 WGHNSMVHLQLWDIAGQERYGNLTRVYYRDAVGGFVVLDLGRPLQESLDIVKKWKGDIDS 135
Query: 344 KCILDNGAMLPCLLLASKCD-LPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMN 402
K L NG LP +LLA+K D L D++ + +E + F+ W S+KE+L +E +M
Sbjct: 136 KIRLWNGDALPVVLLANKVDLLGDKKADERTLEEFAKENGFIGWFATSAKENLHVEKAMT 195
Query: 403 FLVDRII 409
FL++ II
Sbjct: 196 FLINHII 202
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 88 SPSPRASVIGFEPRPSDA----ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGV 143
+P R++ G P+ A E + KILV+G+ GKTS ++ + N+F DNYK+T+GV
Sbjct: 8 TPRARSNTNGGAPKELPAAQKKEFLYKILVVGNMGTGKTSIIKRYCDNEFSDNYKSTIGV 67
Query: 144 DFSTKLL 150
DF+ K L
Sbjct: 68 DFALKSL 74
>gi|345329240|ref|XP_003431352.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-32-like
[Ornithorhynchus anatinus]
Length = 217
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 111/172 (64%), Gaps = 3/172 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+ VGK ++ +V F Y+ T+GVDF+ K+ V+LQ+WDIA
Sbjct: 18 FKVLVIGELGVGKILMIKRYVHQLFSQLYRATIGVDFALKVFHWDN--ATLVRLQLWDIA 75
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G ++FD++ +FE+V +WK+DLDSK L NG+ +P +LLA+
Sbjct: 76 GQERFGNMTRVYYKEAVGAFVVFDISRGSTFEAVSKWKNDLDSKVQLPNGSAIPAVLLAN 135
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
KCD D +++++ C + F W E S+K+++ IE++ FLV++I+ +
Sbjct: 136 KCDQKKDSGQNLSQMDQFCKENGFSGWFETSAKDNINIEEAARFLVEKILAN 187
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 156 GGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 215
GG ++ + +L+ G+ VGK ++ +V F Y+ T+GVDF+ K+
Sbjct: 3 GGMRTQAVPEVREHLFKVLVIGELGVGKILMIKRYVHQLFSQLYRATIGVDFALKVFHWD 62
Query: 216 KYGGRPVKLQIWDI 229
V+LQ+WDI
Sbjct: 63 N--ATLVRLQLWDI 74
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P E + K+LVIG+ VGK ++ +V F Y+ T+GVDF+ K+
Sbjct: 11 PEVREHLFKVLVIGELGVGKILMIKRYVHQLFSQLYRATIGVDFALKVF 59
>gi|281350978|gb|EFB26562.1| hypothetical protein PANDA_011856 [Ailuropoda melanoleuca]
Length = 209
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 127/198 (64%), Gaps = 12/198 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 9 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDNRTLVRLQLWDI 65
Query: 300 AG-QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
AG Q+R+ M+RVYY+ + G I+FD++ +FE+V++WK DLD K L NG+ +P +LL
Sbjct: 66 AGRQERFGNMTRVYYREAVGAFIVFDISRGSTFEAVLKWKSDLDGKVRLANGSPIPAVLL 125
Query: 359 ASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR---M 414
A+KCD D +++ C ++ F W E S+K+++ I+++ FLV+ I+ + +
Sbjct: 126 ANKCDQKKDGGQNPPQMDQFCKEHGFTGWFETSAKDNINIDEAARFLVENILANHQSFPS 185
Query: 415 EEEAVERKSSIRLSEETL 432
EE V++ I+L + TL
Sbjct: 186 EENDVDK---IKLDQGTL 200
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 2 PETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 51
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 9 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDNRTLVRLQLWDI 65
>gi|440801165|gb|ELR22187.1| Ras family protein [Acanthamoeba castellanii str. Neff]
Length = 220
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 123/195 (63%), Gaps = 11/195 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ GD GKTS ++ +V N F +YK+T+GVDF+ K+++ V+LQ+WDIA
Sbjct: 14 YKVLVVGDIGTGKTSIIKRYVHNIFSMHYKSTIGVDFALKVINWDPK--TIVRLQLWDIA 71
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCIL-DNGAMLPCLLLA 359
GQ+R+ M+RVYY+ + G ++FD+T +FE+V +WK+D+D+K L + +P +LLA
Sbjct: 72 GQERFGNMTRVYYKEAVGAFVVFDVTRVNTFEAVQKWKNDIDNKVTLPPDDRPIPVVLLA 131
Query: 360 SKCDLPDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
+KCDL N +++ C ++ F W E S+KE++ I+ ++ FLV +I+ E
Sbjct: 132 NKCDLAKEGFARNAAQMDKYCEEHGFAGWEETSAKENINIDKAVKFLVSKIL------EN 185
Query: 418 AVERKSSIRLSEETL 432
+ R++ ++ +E +
Sbjct: 186 DINRQNQLQKKDENI 200
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ GD GKTS ++ +V N F +YK+T+GVDF+ K+++ V+LQ+WDI
Sbjct: 14 YKVLVVGDIGTGKTSIIKRYVHNIFSMHYKSTIGVDFALKVINWDPK--TIVRLQLWDI 70
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LV+GD GKTS ++ +V N F +YK+T+GVDF+ K+++
Sbjct: 11 EYLYKVLVVGDIGTGKTSIIKRYVHNIFSMHYKSTIGVDFALKVIN 56
>gi|58332248|ref|NP_001011276.1| RAB32, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|56789062|gb|AAH87989.1| RAB32, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|89266817|emb|CAJ83386.1| RAB32, member RAS oncogene family [Xenopus (Silurana) tropicalis]
Length = 223
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 119/194 (61%), Gaps = 4/194 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+++ V+LQ+WDIA
Sbjct: 23 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVINWDS--STLVRLQLWDIA 80
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G ++FD+T +FE++ +WK DLDSK L +G +P +LLA+
Sbjct: 81 GQERFGNMTRVYYKEAVGAFVVFDVTRGSTFEAITKWKSDLDSKVFLPSGGPIPAVLLAN 140
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
KCD ++++ C + F +W E S+K+++ I+++ LV+ I+ + +
Sbjct: 141 KCDQKKENSLQSPHQMDNFCKENGFAAWFETSAKDNMNIDEAARCLVENILANAKNFPVE 200
Query: 419 VERKSSIRLSEETL 432
SIR+ +E +
Sbjct: 201 ENDDGSIRVDQEAM 214
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 150 LSHKKYGGRPYGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 207
++ + GG P +P + YL +L+ G+ VGKTS ++ +V F +Y+ T+GVDF
Sbjct: 1 MAGEGAGGEPSSPRAP-ERKEYLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDF 59
Query: 208 STKLLSHKKYGGRPVKLQIWDI 229
+ K+++ V+LQ+WDI
Sbjct: 60 ALKVINWDS--STLVRLQLWDI 79
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 8/62 (12%)
Query: 90 SPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
SPRA P E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+
Sbjct: 12 SPRA--------PERKEYLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKV 63
Query: 150 LS 151
++
Sbjct: 64 IN 65
>gi|358419550|ref|XP_001252195.3| PREDICTED: ras-related protein Rab-38 isoform 1 [Bos taurus]
gi|359080887|ref|XP_002699093.2| PREDICTED: ras-related protein Rab-38 [Bos taurus]
gi|440893046|gb|ELR45967.1| Ras-related protein Rab-38 [Bos grunniens mutus]
Length = 211
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 118/184 (64%), Gaps = 10/184 (5%)
Query: 236 IQIP----TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 291
+Q+P Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 1 MQVPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETV 58
Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA 351
V+LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG
Sbjct: 59 VRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVTKWKNDLDSKLSLPNGK 118
Query: 352 MLPCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ +LLA+KCD + V +N +++ C ++ F+ W E S+KE++ I+++ LV I
Sbjct: 119 PVSVVLLANKCD-QGKDVLLNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHI 177
Query: 409 ICSK 412
+ ++
Sbjct: 178 LANE 181
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 165 PIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+L
Sbjct: 4 PHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVRL 61
Query: 225 QIWDI 229
Q+WDI
Sbjct: 62 QLWDI 66
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|431838500|gb|ELK00432.1| Ras-related protein Rab-38 [Pteropus alecto]
Length = 211
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 119/189 (62%), Gaps = 4/189 (2%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APNKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVR 60
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG +
Sbjct: 61 LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVTKWKNDLDSKLSLPNGKPV 120
Query: 354 PCLLLASKCDLPDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
+LLA+KCD + N +++ C ++ F+ W E S+KE++ I+++ LV I+ +
Sbjct: 121 SVVLLANKCDQGKDMLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILAN 180
Query: 412 KRMEEEAVE 420
+ E++E
Sbjct: 181 ECDLMESIE 189
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APNKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVR 60
Query: 224 LQIWDI 229
LQ+WDI
Sbjct: 61 LQLWDI 66
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 5 NKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|298713180|emb|CBJ26936.1| Rab32A, RAB family GTPase [Ectocarpus siliculosus]
Length = 276
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 109/170 (64%), Gaps = 4/170 (2%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
T +L+ GD GKTS ++ +V + F ++K TVGVDF+ K L G VKLQ+WDI
Sbjct: 79 TVKVLVLGDPATGKTSIIKRYVHDFFSGHHKTTVGVDFALKQLV---VGDTTVKLQLWDI 135
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQDR+ ++R YY+ + G ++++D+ SF++V +WK ++D K L +G LP +LLA
Sbjct: 136 AGQDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKVRLPDGGRLPVVLLA 195
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+KCDL D ++ + C ++ F W E S+K+++ I++ FLV++++
Sbjct: 196 NKCDL-DIPIDREALTWFCDRHGFAGWFETSAKQNINIDEGSRFLVEKVL 244
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+L+ GD GKTS ++ +V + F ++K TVGVDF+ K L G VKLQ+WDI
Sbjct: 82 VLVLGDPATGKTSIIKRYVHDFFSGHHKTTVGVDFALKQLV---VGDTTVKLQLWDI 135
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 101 RPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
R + A +K+LV+GD GKTS ++ +V + F ++K TVGVDF+ K L
Sbjct: 72 RQAAAAVTVKVLVLGDPATGKTSIIKRYVHDFFSGHHKTTVGVDFALKQL 121
>gi|126327830|ref|XP_001362365.1| PREDICTED: ras-related protein Rab-38-like [Monodelphis domestica]
Length = 211
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 116/183 (63%), Gaps = 6/183 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+LQ+WDIA
Sbjct: 10 YKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLQWDPE--TVVRLQLWDIA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK DLD+K L NG + +LLA+
Sbjct: 68 GQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVTKWKSDLDAKLTLPNGKPVSAVLLAN 127
Query: 361 KCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
KCD + V +N +++ C + F+ W E S+KE++ I+++ LV I+ ++ +
Sbjct: 128 KCD-QGKDVLLNNGLKMDQFCKENGFVGWFETSAKENINIDEASRCLVKHILANESDLTQ 186
Query: 418 AVE 420
+VE
Sbjct: 187 SVE 189
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+LQ+WDI
Sbjct: 10 YKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLQWDPE--TVVRLQLWDI 66
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 4/52 (7%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+PR E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 4 QPR----EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|130502148|ref|NP_001076317.1| uncharacterized protein LOC565931 [Danio rerio]
gi|126631826|gb|AAI33897.1| Zgc:162171 protein [Danio rerio]
Length = 224
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 118/181 (65%), Gaps = 11/181 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS--HKKYGGRPVKLQIWDIA 300
+L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L+ H+ V+LQ+WDIA
Sbjct: 9 VLVIGDLGVGKTSIIKRYVHQIFSQHYRATIGVDFALKVLNWDHRTV----VRLQLWDIA 64
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY M+RVYY+ + G +++FD+T +F++V++WK DLDSK L NG LP +LLA+
Sbjct: 65 GQERYGNMTRVYYREAVGALVVFDMTRASTFQAVLKWKKDLDSKVALGNGRPLPAVLLAN 124
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
KCD + ++ ++E + F+ W E S+K++ I+ ++ LV+ I+ +EEE
Sbjct: 125 KCDQQRYGLCSKLPKLEHFSRDHGFVGWYETSAKDNTNIDAAIMRLVENIMA---VEEEN 181
Query: 419 V 419
V
Sbjct: 182 V 182
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E +LK+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 4 ERLLKVLVIGDLGVGKTSIIKRYVHQIFSQHYRATIGVDFALKVLN 49
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 6/59 (10%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS--HKKYGGRPVKLQIWDI 229
+L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L+ H+ V+LQ+WDI
Sbjct: 9 VLVIGDLGVGKTSIIKRYVHQIFSQHYRATIGVDFALKVLNWDHRTV----VRLQLWDI 63
>gi|426251467|ref|XP_004019443.1| PREDICTED: ras-related protein Rab-38 [Ovis aries]
Length = 211
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 118/184 (64%), Gaps = 10/184 (5%)
Query: 236 IQIP----TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 291
+Q+P Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 1 MQVPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETV 58
Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA 351
V+LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG
Sbjct: 59 VRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVTKWKNDLDSKLSLPNGK 118
Query: 352 MLPCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ +LLA+KCD + V +N +++ C ++ F+ W E S+KE++ I+++ LV I
Sbjct: 119 PVSVVLLANKCD-QGKDVLLNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHI 177
Query: 409 ICSK 412
+ ++
Sbjct: 178 LANE 181
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 165 PIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+L
Sbjct: 4 PHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVRL 61
Query: 225 QIWDI 229
Q+WDI
Sbjct: 62 QLWDI 66
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|410972497|ref|XP_003992695.1| PREDICTED: ras-related protein Rab-38 [Felis catus]
Length = 211
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 116/182 (63%), Gaps = 4/182 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+LQ+WDIA
Sbjct: 10 YKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVRLQLWDIA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG + +LLA+
Sbjct: 68 GQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVTKWKNDLDSKLSLPNGKPVSVVLLAN 127
Query: 361 KCDLPDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
KCD + N +++ C ++ F+ W E S+KE++ I+++ LV I+ ++ E+
Sbjct: 128 KCDQGKDVLTNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANECDLMES 187
Query: 419 VE 420
+E
Sbjct: 188 IE 189
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+LQ+WDI
Sbjct: 10 YKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVRLQLWDI 66
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 101 RPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ + E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 2 QAAHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|189534008|ref|XP_690992.3| PREDICTED: ras-related protein Rab-38-like [Danio rerio]
Length = 213
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 110/171 (64%), Gaps = 4/171 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+LQ+WDIA
Sbjct: 7 FKVLVIGDLGVGKTSIIKRYVHQIFSQHYRATIGVDFALKVLHWD--SQTVVRLQLWDIA 64
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY M+RVYY+ + G +I+FD+T +F++V++WK DLD K L+NG +P +LLA+
Sbjct: 65 GQERYGNMTRVYYREAVGALIVFDVTRSSTFDAVLKWKDDLDLKVSLNNGKPVPAVLLAN 124
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
K D + +I +++ C + F+ W E S+KE+ IE + LVD I+
Sbjct: 125 KSDQSREGLCSQIPKLDTFCKENGFVGWFETSAKENSNIEAAAKCLVDHIL 175
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+LQ+WDI
Sbjct: 7 FKVLVIGDLGVGKTSIIKRYVHQIFSQHYRATIGVDFALKVLHWD--SQTVVRLQLWDI 63
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 4 EHLFKVLVIGDLGVGKTSIIKRYVHQIFSQHYRATIGVDFALKVL 48
>gi|312075015|ref|XP_003140228.1| Ras family protein [Loa loa]
gi|307764604|gb|EFO23838.1| Ras family protein [Loa loa]
Length = 239
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 118/186 (63%), Gaps = 8/186 (4%)
Query: 230 YCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK--LLSHKKY 287
Y T S Q + ILI GD GK+S VQ + N F +YK TVGVDF+T+ LLS
Sbjct: 21 YATPSKDQF-LFKILIIGDVGTGKSSIVQRYAHNLFTQHYKATVGVDFATRTLLLSD--- 76
Query: 288 GGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCIL 347
G ++LQ+WDI+GQDR+ M+RVYY+++ G I++FD T + +++ ++WK DLDSK L
Sbjct: 77 -GTTLRLQLWDISGQDRFSNMTRVYYKDAHGAIVVFDCTRQNTYDGALRWKTDLDSKITL 135
Query: 348 DNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
LP +L+A+K DL D ++ ++E + F++ ++ S+K + IEDS + LV++
Sbjct: 136 ATEKPLPSILVANKADL-DNKITDEKLEEYREKGGFLNVLKTSAKANYGIEDSFDLLVEQ 194
Query: 408 IICSKR 413
I+ K+
Sbjct: 195 ILEIKK 200
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 78 LPARELCKSNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNY 137
+P R+ K +S P S+ G+ PS + + KIL+IGD GK+S VQ + N F +Y
Sbjct: 1 MPTRKKRKKSSFQPSTSLNGYAT-PSKDQFLFKILIIGDVGTGKSSIVQRYAHNLFTQHY 59
Query: 138 KNTVGVDFSTKLL 150
K TVGVDF+T+ L
Sbjct: 60 KATVGVDFATRTL 72
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 11/84 (13%)
Query: 153 KKYGGRPYGTFSPIQTPS-----YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 207
KK +P + + TPS + ILI GD GK+S VQ + N F +YK TVGVDF
Sbjct: 8 KKSSFQPSTSLNGYATPSKDQFLFKILIIGDVGTGKSSIVQRYAHNLFTQHYKATVGVDF 67
Query: 208 STK--LLSHKKYGGRPVKLQIWDI 229
+T+ LLS G ++LQ+WDI
Sbjct: 68 ATRTLLLSD----GTTLRLQLWDI 87
>gi|440804116|gb|ELR24994.1| lightoid family protein [Acanthamoeba castellanii str. Neff]
Length = 216
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 110/173 (63%), Gaps = 5/173 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ GD GKT+ ++ +V N + D+YK+T+GVDF+ K ++ V+LQ+WDIA
Sbjct: 11 YKVLVVGDMGTGKTAIIRRYVNNMYSDSYKSTIGVDFALKEINWD--SKTLVRLQLWDIA 68
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY M+RVYY+ + G ++FD+T SFE+V +WK D+DSK L + +P +LLA+
Sbjct: 69 GQERYGNMTRVYYKEAVGAFVVFDITRNSSFEAVKKWKQDIDSKVTLHDQP-IPVVLLAN 127
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL + C ++ F +W S+KE++ +++++ LV I SKR
Sbjct: 128 KCDLVKNPCNEEVMNEYCREHGFAAWFTTSAKENVNVDEAVTALVSAI--SKR 178
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ GD GKT+ ++ +V N + D+YK+T+GVDF+ K ++ V+LQ+WDI
Sbjct: 11 YKVLVVGDMGTGKTAIIRRYVNNMYSDSYKSTIGVDFALKEINWD--SKTLVRLQLWDI 67
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 35/47 (74%)
Query: 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+E + K+LV+GD GKT+ ++ +V N + D+YK+T+GVDF+ K ++
Sbjct: 7 SEYLYKVLVVGDMGTGKTAIIRRYVNNMYSDSYKSTIGVDFALKEIN 53
>gi|298709911|emb|CBJ31636.1| Rab32C, RAB family GTPase [Ectocarpus siliculosus]
Length = 243
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 121/193 (62%), Gaps = 7/193 (3%)
Query: 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS-----HKKYGGRPVK 293
P IL+ GD+ VGKTS +Q FV ++F ++ T+GVDF K ++ + + G V+
Sbjct: 9 PVIKILVVGDAGVGKTSVIQRFVNDEFSPTHRPTIGVDFFIKEVALNGDQSESFPGTTVR 68
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
+Q+WDIAGQDR M+R Y++ + G ++++D++ ++F+S +WK +LD+ L NG+ L
Sbjct: 69 VQLWDIAGQDRARKMNRAYFKGALGALVVYDISRPQTFDSAAKWKQELDANITLPNGSSL 128
Query: 354 PCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLM--IEDSMNFLVDRIICS 411
P +LL +K DL +V+++ I++ + F++W +VS+K+ + E S+ L+ +++C
Sbjct: 129 PVVLLGNKVDLEVAKVDVSYIDSFVETHRFVAWSDVSAKDAINGDFEMSVACLIQKLLCD 188
Query: 412 KRMEEEAVERKSS 424
+ + + R ++
Sbjct: 189 EELFGPGMRRSAA 201
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 5/67 (7%)
Query: 168 TPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS-----HKKYGGRPV 222
+P IL+ GD+ VGKTS +Q FV ++F ++ T+GVDF K ++ + + G V
Sbjct: 8 SPVIKILVVGDAGVGKTSVIQRFVNDEFSPTHRPTIGVDFFIKEVALNGDQSESFPGTTV 67
Query: 223 KLQIWDI 229
++Q+WDI
Sbjct: 68 RVQLWDI 74
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 103 SDAET--VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S AET V+KILV+GD+ VGKTS +Q FV ++F ++ T+GVDF K
Sbjct: 3 SAAETSPVIKILVVGDAGVGKTSVIQRFVNDEFSPTHRPTIGVDFFIK 50
>gi|117939047|dbj|BAF36677.1| Small G Protein RAB [Pyrsonympha grandis]
gi|117939051|dbj|BAF36679.1| Small G Protein RAB [Dinenympha exilis]
gi|117939053|dbj|BAF36680.1| Small G Protein RAB [Dinenympha exilis]
gi|117939055|dbj|BAF36681.1| Small G Protein RAB [Dinenympha exilis]
Length = 187
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 109/169 (64%), Gaps = 4/169 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ GD VGKTS +Q +V N F YK T+GVDF+ KL+ + + V+LQ+WDIAGQ
Sbjct: 4 VLVVGDLGVGKTSLIQRYVHNIFSREYKATIGVDFAYKLIPIAE--DKVVRLQLWDIAGQ 61
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCIL--DNGAMLPCLLLAS 360
+RY M+RVYY+ + G II+FDL+ + +SV +WK D+DSK L + + +P +L+A+
Sbjct: 62 ERYGNMTRVYYREAFGAIIVFDLSRPGTLDSVRKWKADIDSKVRLPDPDESPIPVVLMAN 121
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL + ++ C F+ W E S+K+ + ++D +NFLV I+
Sbjct: 122 KCDLIRNGINPVHLDQYCRDNGFVKWHETSAKDGVNVDDGINFLVKCIL 170
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+L+ GD VGKTS +Q +V N F YK T+GVDF+ KL+ + + V+LQ+WDI
Sbjct: 4 VLVVGDLGVGKTSLIQRYVHNIFSREYKATIGVDFAYKLIPIAE--DKVVRLQLWDI 58
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+LK+LV+GD VGKTS +Q +V N F YK T+GVDF+ KL+
Sbjct: 1 LLKVLVVGDLGVGKTSLIQRYVHNIFSREYKATIGVDFAYKLI 43
>gi|117939043|dbj|BAF36675.1| Small G Protein RAB [Pyrsonympha grandis]
gi|117939045|dbj|BAF36676.1| Small G Protein RAB [Pyrsonympha grandis]
Length = 184
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 109/169 (64%), Gaps = 4/169 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ GD VGKTS +Q +V N F YK T+GVDF+ KL+ + + V+LQ+WDIAGQ
Sbjct: 4 VLVVGDLGVGKTSLIQRYVHNIFSREYKTTIGVDFAYKLIPIAE--DKVVRLQLWDIAGQ 61
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCIL--DNGAMLPCLLLAS 360
+RY M+RVYY+ + G II+FDL+ + +SV +WK D+DSK L + + +P +L+A+
Sbjct: 62 ERYGNMTRVYYREAFGAIIVFDLSRPGTLDSVRKWKADIDSKVRLPDPDESPIPVVLMAN 121
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL + ++ C F+ W E S+K+ + ++D +NFLV I+
Sbjct: 122 KCDLIRNGINPVHLDQYCRDNGFVKWHETSAKDGVNVDDGINFLVKCIL 170
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+L+ GD VGKTS +Q +V N F YK T+GVDF+ KL+ + + V+LQ+WDI
Sbjct: 4 VLVVGDLGVGKTSLIQRYVHNIFSREYKTTIGVDFAYKLIPIAE--DKVVRLQLWDI 58
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+LK+LV+GD VGKTS +Q +V N F YK T+GVDF+ KL+
Sbjct: 1 LLKVLVVGDLGVGKTSLIQRYVHNIFSREYKTTIGVDFAYKLI 43
>gi|117939059|dbj|BAF36683.1| Small G Protein RAB [Dinenympha exilis]
Length = 186
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 109/169 (64%), Gaps = 4/169 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ GD VGKTS +Q +V N F YK T+GVDF+ KL+ + + V+LQ+WDIAGQ
Sbjct: 4 VLVVGDLGVGKTSLIQRYVHNIFSREYKATIGVDFAYKLIPIAE--DKVVRLQLWDIAGQ 61
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCIL--DNGAMLPCLLLAS 360
+RY M+RVYY+ + G II+FDL+ + +SV +WK D+DSK L + + +P +L+A+
Sbjct: 62 ERYGNMTRVYYREAFGAIIVFDLSRPGTLDSVRKWKADIDSKVRLPDPDESPIPVVLMAN 121
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL + ++ C F+ W E S+K+ + ++D +NFLV I+
Sbjct: 122 KCDLIRNGINPVHLDQYCRDNGFVKWHETSAKDGVNVDDGINFLVKCIL 170
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+L+ GD VGKTS +Q +V N F YK T+GVDF+ KL+ + + V+LQ+WDI
Sbjct: 4 VLVVGDLGVGKTSLIQRYVHNIFSREYKATIGVDFAYKLIPIAE--DKVVRLQLWDI 58
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+LK+LV+GD VGKTS +Q +V N F YK T+GVDF+ KL+
Sbjct: 1 LLKVLVVGDLGVGKTSLIQRYVHNIFSREYKATIGVDFAYKLI 43
>gi|117939049|dbj|BAF36678.1| Small G Protein RAB [Pyrsonympha grandis]
Length = 183
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 109/169 (64%), Gaps = 4/169 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ GD VGKTS +Q +V N F YK T+GVDF+ KL+ + + V+LQ+WDIAGQ
Sbjct: 4 VLVVGDLGVGKTSLIQRYVHNIFSREYKATIGVDFAYKLIPIAE--DKVVRLQLWDIAGQ 61
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCIL--DNGAMLPCLLLAS 360
+RY M+RVYY+ + G II+FDL+ + +SV +WK D+DSK L + + +P +L+A+
Sbjct: 62 ERYGNMTRVYYREAFGAIIVFDLSRPGTLDSVRKWKADIDSKVRLPDPDESPIPVVLMAN 121
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL + ++ C F+ W E S+K+ + ++D +NFLV I+
Sbjct: 122 KCDLIRNGINPVHLDQYCRDNGFVKWHETSAKDGVNVDDGINFLVKCIL 170
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+L+ GD VGKTS +Q +V N F YK T+GVDF+ KL+ + + V+LQ+WDI
Sbjct: 4 VLVVGDLGVGKTSLIQRYVHNIFSREYKATIGVDFAYKLIPIAE--DKVVRLQLWDI 58
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+LK+LV+GD VGKTS +Q +V N F YK T+GVDF+ KL+
Sbjct: 1 LLKVLVVGDLGVGKTSLIQRYVHNIFSREYKATIGVDFAYKLI 43
>gi|156537368|ref|XP_001606642.1| PREDICTED: ras-related protein Rab-32-like [Nasonia vitripennis]
Length = 222
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 119/197 (60%), Gaps = 7/197 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ IL+ GD VGKT+ V+ + + KF NYK T+G DF+ K L +KLQ+WDIA
Sbjct: 25 FKILVIGDYGVGKTAIVRRYTEGKFSSNYKITIGADFAIKNLDWD--SQTKIKLQLWDIA 82
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +R+ M+RVYY+ + ++FD++ +F+SV +W DL K L +G+ +P +LLA+
Sbjct: 83 GHERFGYMTRVYYKYAVAAALVFDISRVATFQSVKKWLGDLREKVTLPDGSKIPIVLLAN 142
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
KCD+ V +I C + + SW S+KE+L I+++M++LV ++ SK EE
Sbjct: 143 KCDINQAAVPNEQIIKFCKENDIGSWFVTSAKENLNIDEAMHYLVGNVLKSKINEEI--- 199
Query: 421 RKSSIRLSEE-TLRDDQ 436
+ SI+L + LRD Q
Sbjct: 200 -RESIKLRDTPLLRDKQ 215
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ IL+ GD VGKT+ V+ + + KF NYK T+G DF+ K L +KLQ+WDI
Sbjct: 25 FKILVIGDYGVGKTAIVRRYTEGKFSSNYKITIGADFAIKNLDWD--SQTKIKLQLWDI 81
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 8/58 (13%)
Query: 101 RPSDA--------ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
R SDA E + KILVIGD VGKT+ V+ + + KF NYK T+G DF+ K L
Sbjct: 9 RDSDAVFQHFGQKELLFKILVIGDYGVGKTAIVRRYTEGKFSSNYKITIGADFAIKNL 66
>gi|156371538|ref|XP_001628820.1| predicted protein [Nematostella vectensis]
gi|156215806|gb|EDO36757.1| predicted protein [Nematostella vectensis]
Length = 241
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 110/179 (61%), Gaps = 2/179 (1%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+ ++ Y +L+ G+ VGKTS ++ + + F NYK T+GVDF+ K++ + +
Sbjct: 9 MGEVKEHLYKVLVIGEYGVGKTSIIRRYTEGYFSPNYKLTIGVDFALKIIHWDE--KTKI 66
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
LQ+WD+AG +R+ M+RVYY+ + II+FDL+ +F+++++W D++ K +L N
Sbjct: 67 NLQLWDVAGHERFGHMTRVYYKYAIAAIIVFDLSRSATFDAILKWYRDVNQKVMLTNENP 126
Query: 353 LPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
+P ++LA+KCDL D V+ +++ C F W S+KE I+D+M FLV I+ +
Sbjct: 127 IPVIILANKCDLEDYPVDEEKLDQFCQNNGFAGWFATSAKEDYNIDDAMRFLVQAILST 185
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ G+ VGKTS ++ + + F NYK T+GVDF+ K++ + + LQ+WD+
Sbjct: 17 YKVLVIGEYGVGKTSIIRRYTEGYFSPNYKLTIGVDFALKIIHWDE--KTKINLQLWDV 73
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIG+ VGKTS ++ + + F NYK T+GVDF+ K++
Sbjct: 14 EHLYKVLVIGEYGVGKTSIIRRYTEGYFSPNYKLTIGVDFALKII 58
>gi|117939057|dbj|BAF36682.1| Small G Protein RAB [Dinenympha exilis]
Length = 187
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 109/169 (64%), Gaps = 4/169 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ GD VGKTS +Q +V N F YK T+GVDF+ KL+ + + V+LQ+WDIAGQ
Sbjct: 4 VLVVGDLGVGKTSLIQRYVYNIFSREYKATIGVDFAYKLIPIAE--DKVVRLQLWDIAGQ 61
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCIL--DNGAMLPCLLLAS 360
+RY M+RVYY+ + G II+FDL+ + +SV +WK D+DSK L + + +P +L+A+
Sbjct: 62 ERYGNMTRVYYREAFGAIIVFDLSRPGTLDSVRKWKADIDSKVRLPDPDESPIPVVLMAN 121
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL + ++ C F+ W E S+K+ + ++D +NFLV I+
Sbjct: 122 KCDLIRNGINPVHLDQYCRDNGFVKWHETSAKDGVNVDDGINFLVKCIL 170
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+L+ GD VGKTS +Q +V N F YK T+GVDF+ KL+ + + V+LQ+WDI
Sbjct: 4 VLVVGDLGVGKTSLIQRYVYNIFSREYKATIGVDFAYKLIPIAE--DKVVRLQLWDI 58
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+LK+LV+GD VGKTS +Q +V N F YK T+GVDF+ KL+
Sbjct: 1 LLKVLVVGDLGVGKTSLIQRYVYNIFSREYKATIGVDFAYKLI 43
>gi|189522743|ref|XP_001340450.2| PREDICTED: ras-related protein Rab-32 [Danio rerio]
Length = 208
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 119/194 (61%), Gaps = 9/194 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD VGK+S+V+ +V+N+F + K ++GVDFS K++ + V+LQ+WDIA
Sbjct: 14 FKVLVIGDHKVGKSSFVKRYVRNQFYEELKTSIGVDFSMKVIDWDAH--TRVRLQLWDIA 71
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R ++RVY++ S G +++DLTN S + + WK +LD + +L NG +P +LLA+
Sbjct: 72 GQERVRGLNRVYFRGSSGAFVVYDLTNGSSLDGALNWKRELDCQVMLKNGHPIPAVLLAN 131
Query: 361 KCD---LPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
KCD + R + +E +C + F + S+KE++ ++++ FLV I+ + EE
Sbjct: 132 KCDETKVSRRNASL--LEKLCQEKGFTGCFQTSAKENINVDEAAKFLVKHIL--QINEES 187
Query: 418 AVERKSSIRLSEET 431
E + I L +T
Sbjct: 188 MKEEEQKIHLKPQT 201
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD VGK+S+V+ +V+N+F + K ++GVDFS K++ + V+LQ+WDI
Sbjct: 14 FKVLVIGDHKVGKSSFVKRYVRNQFYEELKTSIGVDFSMKVIDWDAH--TRVRLQLWDI 70
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 35/45 (77%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGK+S+V+ +V+N+F + K ++GVDFS K++
Sbjct: 11 EHLFKVLVIGDHKVGKSSFVKRYVRNQFYEELKTSIGVDFSMKVI 55
>gi|47221259|emb|CAG13195.1| unnamed protein product [Tetraodon nigroviridis]
Length = 288
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 110/170 (64%), Gaps = 3/170 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD VGK+S + +V +F++ YK ++GVDF+ K + V+LQ WDIA
Sbjct: 5 FKVLVIGDLGVGKSSVILRYVNKRFVEKYKASIGVDFALKTIEWDPQ--TVVRLQFWDIA 62
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ MSRVYY+ + G +++FD T R + E+ +WK DLD K LD G LP +LLA+
Sbjct: 63 GQERFRKMSRVYYKGAMGVLVVFDGTKRSTLEAASEWKRDLDGKVRLDGGRPLPSVLLAN 122
Query: 361 KCDLPDR-QVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL R + + + + C + +F E S+K+++ I+++++FLV +++
Sbjct: 123 KCDLKGRDRGDASWLNTFCEENSFSGCFETSAKDNINIDEAVDFLVTQMM 172
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGK+S + +V +F++ YK ++GVDF+ K +
Sbjct: 2 EKLFKVLVIGDLGVGKSSVILRYVNKRFVEKYKASIGVDFALKTI 46
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD VGK+S + +V +F++ YK ++GVDF+ K + V+LQ WDI
Sbjct: 5 FKVLVIGDLGVGKSSVILRYVNKRFVEKYKASIGVDFALKTIEWDPQ--TVVRLQFWDI 61
>gi|339247021|ref|XP_003375144.1| Ras-related protein Rab-32 [Trichinella spiralis]
gi|316971523|gb|EFV55281.1| Ras-related protein Rab-32 [Trichinella spiralis]
Length = 247
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 120/210 (57%), Gaps = 9/210 (4%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
T+ IL+ GD GKTS ++ +V N F Y+ T+GVDF+ K+ +LQ WDI
Sbjct: 35 TFKILVIGDICTGKTSIIRRYVHNLFSSQYQATIGVDFAMKIFHCSN--SSTARLQFWDI 92
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G II+FD++ + + V +WK DLDSKC L NG +P +LLA
Sbjct: 93 AGQERFSSMTRVYYRGAAGAIIVFDVSRASTLDGVTRWKKDLDSKCRLSNGMPIPAVLLA 152
Query: 360 SKCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR-----IICSK 412
+K DL +++++++ C ++ F+ W S+K I ++++ L + + +
Sbjct: 153 NKSDLLKHYATEQLSKLDSFCAKHGFVGWFATSAKLSTGIAEAVSNLCEHASMIMVEMNG 212
Query: 413 RMEEEAVERKSSIRLSEETLRDDQPKKLVP 442
E V S+I L++E+ + K+ P
Sbjct: 213 NFEIPVVSAISNIELADESNKKSVRKERKP 242
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
++ IL+ GD GKTS ++ +V N F Y+ T+GVDF+ K+ +LQ WDI
Sbjct: 35 TFKILVIGDICTGKTSIIRRYVHNLFSSQYQATIGVDFAMKIFHCSN--SSTARLQFWDI 92
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E KILVIGD GKTS ++ +V N F Y+ T+GVDF+ K+
Sbjct: 32 GEYTFKILVIGDICTGKTSIIRRYVHNLFSSQYQATIGVDFAMKIF 77
>gi|291408137|ref|XP_002720314.1| PREDICTED: RAB38 [Oryctolagus cuniculus]
Length = 210
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 117/181 (64%), Gaps = 7/181 (3%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+LQ+WDIAGQ
Sbjct: 12 LLVIGDLGVGKTSIIKRYVHQNF-SHYRATIGVDFALKVLHWDP--ETVVRLQLWDIAGQ 68
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ M+RVYY+ G I+FD+T +FE+V +WK+DLDSK L NG + +LLA+KC
Sbjct: 69 ERFGNMTRVYYREVMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPVSVVLLANKC 128
Query: 363 DLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
D + V +N +++ C ++ F+ W E S+KE++ I+++ +LV I+ ++ E++
Sbjct: 129 DQA-KDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRYLVKHILANECDLMESI 187
Query: 420 E 420
E
Sbjct: 188 E 188
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+LQ+WDI
Sbjct: 12 LLVIGDLGVGKTSIIKRYVHQNF-SHYRATIGVDFALKVLHWDP--ETVVRLQLWDI 65
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ E +++LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 5 EVEVAVQLLVIGDLGVGKTSIIKRYVHQNF-SHYRATIGVDFALKVL 50
>gi|427783513|gb|JAA57208.1| Putative rab gtpase [Rhipicephalus pulchellus]
Length = 225
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD VGKTS ++ + + F YK T+GVDFS K L + G + + LQ+WDIA
Sbjct: 26 FKVLVIGDFGVGKTSLIRRYTEGVFNPAYKITIGVDFSLKHLVYN--GNKHITLQLWDIA 83
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +R+ M+RVYY+ + +I++DL+ + SV++WK DL +K L NG LP LL+A+
Sbjct: 84 GHERFGYMTRVYYKYATAAVIVYDLSRPATLHSVLKWKADLTAKVELPNGRPLPVLLVAN 143
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCDL + + C ++ F W S+KE + I ++M LV+ ++ +
Sbjct: 144 KCDLGSQPPNARFLSNFCQEHGFTGWFPTSAKEDININEAMRCLVEEVLAQR 195
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 150 LSHKKYGGRPYGTFSP----IQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGV 205
+S K R G+F I+ + +L+ GD VGKTS ++ + + F YK T+GV
Sbjct: 1 MSSLKEANRQSGSFDSTKYDIEDLLFKVLVIGDFGVGKTSLIRRYTEGVFNPAYKITIGV 60
Query: 206 DFSTKLLSHKKYGGRPVKLQIWDI 229
DFS K L + G + + LQ+WDI
Sbjct: 61 DFSLKHLVYN--GNKHITLQLWDI 82
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 98 FEPRPSDAETVL-KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG 156
F+ D E +L K+LVIGD VGKTS ++ + + F YK T+GVDFS L H Y
Sbjct: 14 FDSTKYDIEDLLFKVLVIGDFGVGKTSLIRRYTEGVFNPAYKITIGVDFS---LKHLVYN 70
Query: 157 GRPYGTF 163
G + T
Sbjct: 71 GNKHITL 77
>gi|66825191|ref|XP_645950.1| Rab GTPase [Dictyostelium discoideum AX4]
gi|74897435|sp|Q55E31.1|RB32B_DICDI RecName: Full=Ras-related protein Rab-32B
gi|60474121|gb|EAL72058.1| Rab GTPase [Dictyostelium discoideum AX4]
Length = 260
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 107/176 (60%), Gaps = 2/176 (1%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
+ I+ Y +L+ GD VGK+S ++ + F NYK T+GVDFS K + +K + V
Sbjct: 53 TDIEKHLYKVLLIGDYAVGKSSIIKRYCTGIFSPNYKLTIGVDFSVKDIEWEK--NKIVS 110
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
LQ+WDIAG +R+ M+RVYY+ + II+FDL+ +F++V +W+ D++SK +L N +
Sbjct: 111 LQLWDIAGHERFGTMTRVYYRYAIAAIIVFDLSRPSTFDAVTKWREDVNSKVVLANQEPI 170
Query: 354 PCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
P LLLA+K DL V+ ++ C + NF+ W S+ I ++M+FL I+
Sbjct: 171 PVLLLANKSDLSTSYVDSEMLDRFCKENNFIGWFATSASNDTNINEAMHFLTKEIL 226
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
+ I+ Y +L+ GD VGK+S ++ + F NYK T+GVDFS K + +K + V
Sbjct: 53 TDIEKHLYKVLLIGDYAVGKSSIIKRYCTGIFSPNYKLTIGVDFSVKDIEWEK--NKIVS 110
Query: 224 LQIWDI 229
LQ+WDI
Sbjct: 111 LQLWDI 116
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 154
+ K+L+IGD VGK+S ++ + F NYK T+GVDFS K + +K
Sbjct: 59 LYKVLLIGDYAVGKSSIIKRYCTGIFSPNYKLTIGVDFSVKDIEWEK 105
>gi|340369097|ref|XP_003383085.1| PREDICTED: ras-related protein Rab-7L1-like [Amphimedon
queenslandica]
Length = 206
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 108/167 (64%), Gaps = 3/167 (1%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
+ +L+ GD +VGKT++V +V NK++ N K TVG D++ K S K ++L +WDI
Sbjct: 5 VFKVLLIGDHSVGKTTFVASYVLNKWVPNLKTTVGADYAVK--SVKWSETETIRLHLWDI 62
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ ++R Y++ + GC++MFD+TN KSFES +WK +LDSK L NG +PC+LL
Sbjct: 63 AGQERFHSIARTYFRGASGCVVMFDVTNNKSFESAREWKQELDSKVELPNGEKVPCVLLG 122
Query: 360 SKCDLPDRQVEI-NEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLV 405
+K DL D++V ++++ + F+ + S KE I + M+ L+
Sbjct: 123 NKDDLVDKKVVTQSQVDKFARENGFIHYSFCSVKEGKGITEPMSELI 169
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
E+V K+L+IGD +VGKT++V +V NK++ N K TVG D++ K
Sbjct: 3 ESVFKVLLIGDHSVGKTTFVASYVLNKWVPNLKTTVGADYAVK 45
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD +VGKT++V +V NK++ N K TVG D++ K S K ++L +WDI
Sbjct: 6 FKVLLIGDHSVGKTTFVASYVLNKWVPNLKTTVGADYAVK--SVKWSETETIRLHLWDI 62
>gi|117939061|dbj|BAF36684.1| Small G Protein RAB [Dinenympha exilis]
Length = 187
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 107/169 (63%), Gaps = 4/169 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ GD VGKTS +Q +V N F YK T+GVDF+ KL+ + + V LQ+WDIAGQ
Sbjct: 4 VLVVGDLGVGKTSLIQRYVHNIFSREYKATIGVDFAYKLIPIAE--DKVVGLQLWDIAGQ 61
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCIL--DNGAMLPCLLLAS 360
+RY M+RVYY+ + G II+FDL+ + +SV +WK D+DSK L + + +P +L+A+
Sbjct: 62 ERYGNMTRVYYREAFGAIIVFDLSRPGTLDSVRKWKADIDSKVRLPDPDESPIPVVLMAN 121
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL + ++ C + W E S+K+ + ++D +NFLV I+
Sbjct: 122 KCDLIRNGINPVHLDQYCRDNGLVKWYETSAKDGVNVDDGINFLVKCIL 170
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+L+ GD VGKTS +Q +V N F YK T+GVDF+ KL+ + + V LQ+WDI
Sbjct: 4 VLVVGDLGVGKTSLIQRYVHNIFSREYKATIGVDFAYKLIPIAE--DKVVGLQLWDI 58
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+LK+LV+GD VGKTS +Q +V N F YK T+GVDF+ KL+
Sbjct: 1 LLKVLVVGDLGVGKTSLIQRYVHNIFSREYKATIGVDFAYKLI 43
>gi|323448668|gb|EGB04563.1| hypothetical protein AURANDRAFT_32238 [Aureococcus anophagefferens]
Length = 241
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 119/203 (58%), Gaps = 5/203 (2%)
Query: 235 PIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 294
P +P IL+ GD VGKT+ ++ V+++F YK+T GVDF+ K + G+ V+L
Sbjct: 38 PASLPV-KILVLGDKAVGKTALIRQLVRDEFTSRYKSTTGVDFALKEID---VDGQTVRL 93
Query: 295 QIWDIAGQDRYI-CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
Q+WD+AG + + +++VYY+++ G ++++D+T +F++V WK ++D K L N +
Sbjct: 94 QLWDVAGAETTLGSIAKVYYRDTFGVLLVYDVTRPTTFDTVTAWKREIDDKVALSNDEPV 153
Query: 354 PCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
P +LL +KCD+ + E++ C Q+ F++W +VS+K I ++ LV +I
Sbjct: 154 PVVLLGNKCDIETATADTAELDRFCGQWGFVAWFDVSAKTGFNIAEAARCLVQKITSYPD 213
Query: 414 MEEEAVERKSSIRLSEETLRDDQ 436
+ E ++ ++ R + DDQ
Sbjct: 214 LFEARYKQNAAFRPALAFAEDDQ 236
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 97 GFEPRPSDAETV-LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
G P+D ++ +KILV+GD VGKT+ ++ V+++F YK+T GVDF+ K
Sbjct: 30 GRAASPADPASLPVKILVLGDKAVGKTALIRQLVRDEFTSRYKSTTGVDFALK 82
>gi|198413093|ref|XP_002130668.1| PREDICTED: similar to RAB32, member RAS oncogene family [Ciona
intestinalis]
Length = 208
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 116/179 (64%), Gaps = 12/179 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K++ G ++LQ+WDIA
Sbjct: 10 FKVLVIGELGVGKTSVIKRYVHQIFSQHYRATIGVDFALKVVHWD--GETLIRLQLWDIA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD T +FE+V +WK+DLD+K L +G +P +LL +
Sbjct: 68 GQERFGNMTRVYYREAVGAFIVFDATRASTFEAVNKWKNDLDNKVTLPDGRNIPTVLLGN 127
Query: 361 KCD------LPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K D L ++Q +++ C + F++W E S+K ++ I+++ +L+D+I+ ++R
Sbjct: 128 KIDQMRGGLLSNKQ----QMDNYCDEKGFVAWFETSAKANINIDEAAKYLIDKILDNER 182
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 167 QTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
Q YL +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K++ G ++L
Sbjct: 4 QRKEYLFKVLVIGELGVGKTSVIKRYVHQIFSQHYRATIGVDFALKVVHWD--GETLIRL 61
Query: 225 QIWDI 229
Q+WDI
Sbjct: 62 QLWDI 66
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K++
Sbjct: 7 EYLFKVLVIGELGVGKTSVIKRYVHQIFSQHYRATIGVDFALKVV 51
>gi|320167999|gb|EFW44898.1| hypothetical protein CAOG_02904 [Capsaspora owczarzaki ATCC 30864]
Length = 225
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 118/191 (61%), Gaps = 8/191 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD TS ++ + + F NYK T+G DF+TK+L + G + LQ+WDIA
Sbjct: 13 FKIIVIGDYA---TSLIRRYSEGFFTPNYKLTIGADFATKVLEWE--SGAKITLQLWDIA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +R+ M+ VYY+ + +I+FD+T +F+SV++W +D+++K +L +G +P +LLA+
Sbjct: 68 GHERFGHMTHVYYKYAIAAVIVFDMTRPATFDSVIKWLNDVNNKVMLPDGKPVPVMLLAN 127
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII-CSKRMEEEAV 419
K D+ D+ V +++ C ++ + W S+K + I+ +MNFLV +I SKR E V
Sbjct: 128 KADMSDKSVYKQKLDDFCKEHGLIGWFATSAKNNANIDQAMNFLVGSVIQISKRAPAELV 187
Query: 420 ER--KSSIRLS 428
+ + +RLS
Sbjct: 188 KSPIEEFVRLS 198
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 161 GTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR 220
G P + I++ GD TS ++ + + F NYK T+G DF+TK+L + G
Sbjct: 3 GAAGPTADQLFKIIVIGDYA---TSLIRRYSEGFFTPNYKLTIGADFATKVLEWE--SGA 57
Query: 221 PVKLQIWDI 229
+ LQ+WDI
Sbjct: 58 KITLQLWDI 66
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
A+ + KI+VIGD TS ++ + + F NYK T+G DF+TK+L
Sbjct: 9 ADQLFKIIVIGDYA---TSLIRRYSEGFFTPNYKLTIGADFATKVL 51
>gi|391336000|ref|XP_003742372.1| PREDICTED: ras-related protein Rab-32-like [Metaseiulus
occidentalis]
Length = 216
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 125/194 (64%), Gaps = 9/194 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+ GKT+ ++ +V + ++Y+ T+GVDF+ K++ + V+LQ+WDIA
Sbjct: 13 FKVLVIGEWGTGKTNIIRRYVHKAYSEHYRPTIGVDFALKVIQWDE--NTVVRLQLWDIA 70
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVY++ + G I+FD+T +FE+V++WK+DLD+K L +G+ +PC+LLA+
Sbjct: 71 GQERFGNMTRVYFKQAVGAFIVFDVTRGATFEAVLKWKNDLDAKAHLADGSPIPCVLLAN 130
Query: 361 KCDLPDRQVEINE--IEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
KCDL D+ I++ ++ C NF SW S+K I+++ L + ++ ++
Sbjct: 131 KCDL-DKGDGISQAKMKHFCETNNFHSWYLTSAKTDTNIDEAARDLANEVL----RRQQI 185
Query: 419 VERKSSIRLSEETL 432
VE +++I +E T+
Sbjct: 186 VECRAAIIAAENTM 199
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ G+ GKT+ ++ +V + ++Y+ T+GVDF+ K++ + V+LQ+WDI
Sbjct: 13 FKVLVIGEWGTGKTNIIRRYVHKAYSEHYRPTIGVDFALKVIQWDE--NTVVRLQLWDI 69
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 33/51 (64%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P + + K+LVIG+ GKT+ ++ +V + ++Y+ T+GVDF+ K++
Sbjct: 4 PAADPRDFLFKVLVIGEWGTGKTNIIRRYVHKAYSEHYRPTIGVDFALKVI 54
>gi|442749927|gb|JAA67123.1| Putative gtp-binding protein-like ras superfamily [Ixodes ricinus]
Length = 229
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 104/170 (61%), Gaps = 4/170 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ + + F YK T+GVDFS L H Y + + LQ+WDI
Sbjct: 27 FKVLVVGEFGVGKTSLIRRYTEGVFNQAYKITIGVDFS---LKHIVYDNKKHITLQLWDI 83
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AG +R+ CM+RVYY+ + I+++DL+ + SV++WK DL K NG +P +L+A
Sbjct: 84 AGHERFGCMTRVYYKYATAAIVVYDLSRPTTLHSVLKWKADLTEKVEQQNGHPIPVVLVA 143
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+KCDL + + C ++ F+ W S+KE++ I +S+N LV+ I+
Sbjct: 144 NKCDLEGSTINARFLTNFCQEHGFVGWFFTSAKENININESINSLVEHIL 193
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 154 KYGGRPYGTFS----PIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 209
K R GTF ++ + +L+ G+ VGKTS ++ + + F YK T+GVDFS
Sbjct: 6 KEANRLNGTFDYNKYDVEDLLFKVLVVGEFGVGKTSLIRRYTEGVFNQAYKITIGVDFS- 64
Query: 210 KLLSHKKYGGRP-VKLQIWDI 229
L H Y + + LQ+WDI
Sbjct: 65 --LKHIVYDNKKHITLQLWDI 83
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 98 FEPRPSDAETVL-KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
F+ D E +L K+LV+G+ VGKTS ++ + + F YK T+GVDFS K
Sbjct: 15 FDYNKYDVEDLLFKVLVVGEFGVGKTSLIRRYTEGVFNQAYKITIGVDFSLK 66
>gi|384496458|gb|EIE86949.1| hypothetical protein RO3G_11660 [Rhizopus delemar RA 99-880]
Length = 212
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 111/177 (62%), Gaps = 11/177 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-GRPVKLQIWDI 299
Y IL+ GD GKTS ++ +V N F NYK+T+GVDF+ K++ ++G V+LQ+WDI
Sbjct: 6 YKILVVGDLGTGKTSIIRRYVHNIFSTNYKSTIGVDFALKVI---QWGPDIIVRLQLWDI 62
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD---NGAMLPCL 356
AGQ+R+ M+RVYY+ + G I+++D+T ++FE V +WK D+D+K L G +P +
Sbjct: 63 AGQERFGNMTRVYYKEALGAIVVYDITRPQTFEGVTKWKRDIDAKVALPEAWGGGQIPVI 122
Query: 357 LLASKCDL----PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
LLA+K DL + E++ C + F+ W E S+K++ IE++ L+ I+
Sbjct: 123 LLANKTDLIQEGHGQHANPAELDHFCKENGFIQWFETSAKDNSNIEEATRSLISAIV 179
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-GRPVKLQIWDI 229
Y IL+ GD GKTS ++ +V N F NYK+T+GVDF+ K++ ++G V+LQ+WDI
Sbjct: 6 YKILVVGDLGTGKTSIIRRYVHNIFSTNYKSTIGVDFALKVI---QWGPDIIVRLQLWDI 62
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 33/45 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KILV+GD GKTS ++ +V N F NYK+T+GVDF+ K++
Sbjct: 3 EYLYKILVVGDLGTGKTSIIRRYVHNIFSTNYKSTIGVDFALKVI 47
>gi|351701471|gb|EHB04390.1| Ras-related protein Rab-38 [Heterocephalus glaber]
Length = 176
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 108/169 (63%), Gaps = 10/169 (5%)
Query: 236 IQIP----TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 291
+Q+P Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 1 MQVPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETV 58
Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA 351
V+LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG
Sbjct: 59 VRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGK 118
Query: 352 MLPCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMI 397
+ +LLA+KCD + V +N +++ C ++ F+ W E S+K+ +I
Sbjct: 119 PVSVVLLANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKDSSII 166
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 165 PIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+L
Sbjct: 4 PHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETVVRL 61
Query: 225 QIWDI 229
Q+WDI
Sbjct: 62 QLWDI 66
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|149058657|gb|EDM09814.1| RAB7, member RAS oncogene family-like 1, isoform CRA_b [Rattus
norvegicus]
Length = 185
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 87/121 (71%), Gaps = 2/121 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWS--DSEMVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L +G +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLAN 125
Query: 361 K 361
K
Sbjct: 126 K 126
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWS--DSEMVRLQLWDI 64
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 35/45 (77%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ + K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVL 49
>gi|391343988|ref|XP_003746287.1| PREDICTED: ras-related protein Rab-32-like [Metaseiulus
occidentalis]
Length = 245
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 112/178 (62%), Gaps = 7/178 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ G+ GKTS ++ +V + ++Y+ T+GVDF+ K++ + V+LQ+WDIA
Sbjct: 63 YKVLVIGELGTGKTSIIRRYVHKAYSEHYRATIGVDFALKVIQWDE--NTVVRLQLWDIA 120
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVY++ + G I+FD+T +FE+V++WK+DLD+K L +G+ +PC+LLA+
Sbjct: 121 GQERFGNMTRVYFKEAVGAFIVFDVTRGATFEAVLKWKNDLDAKVHLADGSPIPCVLLAN 180
Query: 361 KCDLPDRQVEI----NEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCDL D+ I C NF SW S+K I+++ L + ++ +++
Sbjct: 181 KCDL-DKGDGIXXXXXXXXXXCETNNFHSWYLTSAKTDTNIDEAARDLANEVLRRQQI 237
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ G+ GKTS ++ +V + ++Y+ T+GVDF+ K++ + V+LQ+WDI
Sbjct: 63 YKVLVIGELGTGKTSIIRRYVHKAYSEHYRATIGVDFALKVIQWDE--NTVVRLQLWDI 119
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P + + K+LVIG+ GKTS ++ +V + ++Y+ T+GVDF+ K++
Sbjct: 54 PAADPRDFLYKVLVIGELGTGKTSIIRRYVHKAYSEHYRATIGVDFALKVI 104
>gi|291402523|ref|XP_002717603.1| PREDICTED: RAB7, member RAS oncogene family-like 1 isoform 2
[Oryctolagus cuniculus]
Length = 180
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 103/179 (57%), Gaps = 28/179 (15%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG-------------------------- 41
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 42 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 101
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL V ++I+ + F W E S KE+ I ++M L+++++ + + EEAV
Sbjct: 102 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMSNSK--EEAV 158
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG 41
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG 204
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG 41
>gi|290991925|ref|XP_002678585.1| rab family small GTPase [Naegleria gruberi]
gi|284092198|gb|EFC45841.1| rab family small GTPase [Naegleria gruberi]
Length = 284
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 108/170 (63%), Gaps = 3/170 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ GD VGKTS ++ + +F NY+ T+GVDF K + + V LQ+WDIA
Sbjct: 61 YKVLVVGDYAVGKTSLIRRYCTGEFTSNYRITIGVDFCLKHIDWNE--NTSVSLQLWDIA 118
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM-LPCLLLA 359
G +R+ M+RVYY+ + ++ FD++ + ++V +W+ D++SK +L +G +P +LLA
Sbjct: 119 GHERFGAMTRVYYKYAIAAVVCFDISRPSTLDNVKKWRDDINSKVVLPDGVTPIPMILLA 178
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+KCDLP+ ++ ++ + F++W E S+++++ I+ + +FLV I+
Sbjct: 179 NKCDLPEITIDKTKMNKFAKENGFIAWFETSARKNVNIDTAFHFLVSHIM 228
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ GD VGKTS ++ + +F NY+ T+GVDF K + + V LQ+WDI
Sbjct: 61 YKVLVVGDYAVGKTSLIRRYCTGEFTSNYRITIGVDFCLKHIDWNE--NTSVSLQLWDI 117
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+P + K+LV+GD VGKTS ++ + +F NY+ T+GVDF K
Sbjct: 51 QPSNKTNNHLYKVLVVGDYAVGKTSLIRRYCTGEFTSNYRITIGVDFCLK 100
>gi|391330189|ref|XP_003739546.1| PREDICTED: ras-related protein Rab-32B-like [Metaseiulus
occidentalis]
Length = 201
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD VGKT+ V+ + + +F NYK T+GVDF K L + + + + LQ+WDIA
Sbjct: 13 FKVLVVGDFGVGKTAIVRRYTEGEFSQNYKITIGVDFLIKRL--RWHPNKQITLQMWDIA 70
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +R+ ++RVYY+ + ++++DL+ + ES+++W+ DL K + A LP LLLA+
Sbjct: 71 GHERFGSLTRVYYKYATAAVLVYDLSRPTTLESIIKWREDLREKT---DDARLPTLLLAN 127
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCD+ + +++ C Q+ +W S+KE++ +++++NFLV+RI+
Sbjct: 128 KCDISQ---DWPDLDKFCKQHGIDAWFPTSAKENVNVDEAINFLVERIL 173
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD VGKT+ V+ + + +F NYK T+GVDF K L + + + + LQ+WDI
Sbjct: 13 FKVLVVGDFGVGKTAIVRRYTEGEFSQNYKITIGVDFLIKRL--RWHPNKQITLQMWDI 69
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD VGKT+ V+ + + +F NYK T+GVDF K L
Sbjct: 12 LFKVLVVGDFGVGKTAIVRRYTEGEFSQNYKITIGVDFLIKRL 54
>gi|12844005|dbj|BAB26198.1| unnamed protein product [Mus musculus]
Length = 211
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 108/170 (63%), Gaps = 6/170 (3%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 TPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPE--TVVR 60
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG +
Sbjct: 61 LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPV 120
Query: 354 PCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDS 400
+LLA+KCD + V +N +++ C F+ W E S++ ++ I+++
Sbjct: 121 SVVLLANKCD-QGKDVLMNNGLKMDQFCKDDGFVGWFETSAQRNINIDEA 169
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 166 IQTPS----YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 221
+QTP Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 1 MQTPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPE--TV 58
Query: 222 VKLQIWDI 229
V+LQ+WDI
Sbjct: 59 VRLQLWDI 66
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>gi|345797971|ref|XP_003434383.1| PREDICTED: ras-related protein Rab-7L1 [Canis lupus familiaris]
Length = 179
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 99/173 (57%), Gaps = 26/173 (15%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFQQHYKSTVG-------------------------- 41
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ CIIMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 42 GQERFTSMTRLYYRDASACIIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 101
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V ++++ + F W E S KE+ I ++M L+++++ + R
Sbjct: 102 KCDLSPWAVSRDQVDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMSNSR 154
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFQQHYKSTVG 41
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG 204
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFQQHYKSTVG 41
>gi|338724627|ref|XP_003364981.1| PREDICTED: ras-related protein Rab-7L1-like isoform 2 [Equus
caballus]
Length = 179
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 99/173 (57%), Gaps = 26/173 (15%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG-------------------------- 41
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 42 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 101
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V ++++ + F W E S KE+ I ++M L+++++ + R
Sbjct: 102 KCDLSPWAVSRDQVDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMSNSR 154
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG 41
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG 204
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG 41
>gi|426239401|ref|XP_004013610.1| PREDICTED: ras-related protein Rab-7L1 isoform 2 [Ovis aries]
Length = 179
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 99/173 (57%), Gaps = 26/173 (15%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG-------------------------- 41
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 42 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQKWKQDLDSKLTLPNGEPVPCLLLAN 101
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V ++++ + F W E S KE+ I ++M L+++++ + R
Sbjct: 102 KCDLSPWAVSRDQVDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMSNSR 154
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142
S + + K+LV+GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 2 SSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG 41
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG 204
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG 41
>gi|403294872|ref|XP_003938386.1| PREDICTED: ras-related protein Rab-7L1 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 179
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 104/182 (57%), Gaps = 26/182 (14%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYCQDSFSKHYKSTVG-------------------------- 41
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 42 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 101
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
KCDL V ++I+ + F W E S KE+ I ++M+ L+++++ + R + ++
Sbjct: 102 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMSVLIEKMMRNSREDTLSLS 161
Query: 421 RK 422
K
Sbjct: 162 TK 163
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYCQDSFSKHYKSTVG 41
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG 204
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYCQDSFSKHYKSTVG 41
>gi|350408446|ref|XP_003488406.1| PREDICTED: ras-related protein Rab-32-like [Bombus impatiens]
Length = 219
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 117/191 (61%), Gaps = 6/191 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ L+ GD VGKT+ V+ + + +F NYK T+G DF+ K + ++ + LQ+WD+A
Sbjct: 24 FKFLVIGDYGVGKTALVRRYTEGRFTSNYKITIGADFAIKAVDWDRFT--KINLQLWDVA 81
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +R+ M+RVYY+ + ++FD++ +F+S+ +W DL K L +G+ +P +LLA+
Sbjct: 82 GHERFGYMTRVYYKYAVAAALVFDISRIATFQSIKKWLCDLREKVTLPDGSEIPVVLLAN 141
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
KCD+ V I +I C + N +W S+KE+ I+ +M +LV+ ++ R++ V+
Sbjct: 142 KCDISCPSVPIEQIARFCKENNIGAWYVTSAKENTNIDVAMRYLVENVL-KTRID---VD 197
Query: 421 RKSSIRLSEET 431
+ S+RL +++
Sbjct: 198 IRDSVRLRDKS 208
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ L+ GD VGKT+ V+ + + +F NYK T+G DF+ K + ++ + LQ+WD+
Sbjct: 24 FKFLVIGDYGVGKTALVRRYTEGRFTSNYKITIGADFAIKAVDWDRFT--KINLQLWDV 80
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
E + K LVIGD VGKT+ V+ + + +F NYK T+G DF+ K + ++
Sbjct: 21 ELLFKFLVIGDYGVGKTALVRRYTEGRFTSNYKITIGADFAIKAVDWDRF 70
>gi|196008659|ref|XP_002114195.1| hypothetical protein TRIADDRAFT_58409 [Trichoplax adhaerens]
gi|190583214|gb|EDV23285.1| hypothetical protein TRIADDRAFT_58409 [Trichoplax adhaerens]
Length = 234
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 108/171 (63%), Gaps = 6/171 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ G GKTS ++ +V F +NYK T+GVDF+ K+++ +KLQ+WDIA
Sbjct: 31 FKIIVVGSKFTGKTSIIRRYVHQYFSENYKATIGVDFALKVINWD--AETVIKLQLWDIA 88
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQD Y M+RVY++++ G ++++D+T+ K+FES +WK D+D+K L +G+ +P +LLA+
Sbjct: 89 GQDNYEKMTRVYFKDAVGAVVVYDITDTKTFESTKKWKDDVDNKVFLPDGSTVPVVLLAN 148
Query: 361 KCD---LPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
KCD + D + ++ ++ W E S+K ++ I+ + LV+ I
Sbjct: 149 KCDKAKIGDHN-DPEYLDKFIQDNGYIKWFETSAKTNVNIDKAFRSLVEEI 198
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ I++ G GKTS ++ +V F +NYK T+GVDF+ K+++ +KLQ+WDI
Sbjct: 31 FKIIVVGSKFTGKTSIIRRYVHQYFSENYKATIGVDFALKVINWD--AETVIKLQLWDI 87
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KI+V+G GKTS ++ +V F +NYK T+GVDF+ K+++
Sbjct: 28 EHLFKIIVVGSKFTGKTSIIRRYVHQYFSENYKATIGVDFALKVIN 73
>gi|290562215|gb|ADD38504.1| Ras-related protein Rab-32 [Lepeophtheirus salmonis]
Length = 429
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 103/170 (60%), Gaps = 3/170 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL G S+ GKTS ++ +V++ F +Y+ T+G DF +K++ + ++LQ+WDIA
Sbjct: 230 YKILFIGSSSAGKTSIIRRYVKHTFTPSYRATIGADFLSKVIHWDE--AVTLRLQLWDIA 287
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQDR+ +SR +Y+++ G I+ D++ + ++ + WK +LD+K G LPC LLA+
Sbjct: 288 GQDRFSLLSRSFYKDAVGAFIVCDISRPDTLDACIPWKEELDAKVQTSEGGKLPCFLLAN 347
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL D + VC + F W++ S+KE + I ++ L+ +I+
Sbjct: 348 KCDLVEDSTAQSKLTSKVCQMHGFHGWMQTSAKEDINITQAIEMLLRQIV 397
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 154 KYGGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 213
K GG S ++ Y IL G S+ GKTS ++ +V++ F +Y+ T+G DF +K++
Sbjct: 213 KVGGHKESDISNKESKLYKILFIGSSSAGKTSIIRRYVKHTFTPSYRATIGADFLSKVIH 272
Query: 214 HKKYGGRPVKLQIWDI 229
+ ++LQ+WDI
Sbjct: 273 WDE--AVTLRLQLWDI 286
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 30/41 (73%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
KIL IG S+ GKTS ++ +V++ F +Y+ T+G DF +K++
Sbjct: 231 KILFIGSSSAGKTSIIRRYVKHTFTPSYRATIGADFLSKVI 271
>gi|340720074|ref|XP_003398468.1| PREDICTED: ras-related protein Rab-32-like [Bombus terrestris]
Length = 219
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 114/191 (59%), Gaps = 6/191 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ L+ GD VGKT+ V+ + + +F NYK T+G DF+ K + ++ + LQ+WD+A
Sbjct: 24 FKFLVIGDYGVGKTALVRRYTEGRFTSNYKITIGADFAIKAVDWDRFT--KINLQLWDVA 81
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +R+ M+RVYY+ + ++FD++ +F+S+ +W DL K +G+ +P +LLA+
Sbjct: 82 GHERFGYMTRVYYKYAVAAALVFDISRIATFQSIKKWLSDLREKVTFPDGSEIPVVLLAN 141
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
KCD+P V +I C + N +W S+KE+ I+ +M +LV+ ++ +K V+
Sbjct: 142 KCDIPCPVVPSEQIAKFCKENNIGAWYVTSAKENTNIDVAMRYLVENVLKTK----IDVD 197
Query: 421 RKSSIRLSEET 431
+ S+RL + +
Sbjct: 198 IRDSVRLRDNS 208
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ L+ GD VGKT+ V+ + + +F NYK T+G DF+ K + ++ + LQ+WD+
Sbjct: 24 FKFLVIGDYGVGKTALVRRYTEGRFTSNYKITIGADFAIKAVDWDRFT--KINLQLWDV 80
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
E + K LVIGD VGKT+ V+ + + +F NYK T+G DF+ K + ++
Sbjct: 21 ELLFKFLVIGDYGVGKTALVRRYTEGRFTSNYKITIGADFAIKAVDWDRF 70
>gi|410986337|ref|XP_003999467.1| PREDICTED: ras-related protein Rab-7L1 isoform 2 [Felis catus]
Length = 179
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 99/173 (57%), Gaps = 26/173 (15%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFNKHYKSTVG-------------------------- 41
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 42 GQERFTSMTRLYYRDASACVIMFDVTNATTFTNSQRWKQDLDSKLTLPNGEPVPCLLLAN 101
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V ++++ + F W E S KE+ I ++M L+++++ + R
Sbjct: 102 KCDLSPWAVSRDQVDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMSNSR 154
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFNKHYKSTVG 41
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG 204
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFNKHYKSTVG 41
>gi|428167843|gb|EKX36796.1| hypothetical protein GUITHDRAFT_175417 [Guillardia theta CCMP2712]
Length = 217
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 120/202 (59%), Gaps = 15/202 (7%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP---VKLQI 296
+ +L+ GD VGKTS + +V F +YK T+GVDF+ K++ RP ++LQ+
Sbjct: 17 AFKVLVVGDPRVGKTSIINRYVHGSFDIHYKLTLGVDFALKVIH------RPSSIIRLQL 70
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
DIAGQ++ M+RVYY++++ +++FD+T + +SV WK D+DSK L +G +P +
Sbjct: 71 RDIAGQEKAGTMTRVYYRDANAAVVVFDVTRNITLQSVKIWKQDIDSKLSLPDGRRIPAV 130
Query: 357 LLASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII----CS 411
LLA+KCDL D V ++ + + F+ W S+K+ + ++ NFL+DR I +
Sbjct: 131 LLANKCDLDADPAVTEQVLQDLVTEDQFIGWFLTSAKDDKNVAEAFNFLIDRAISDYEAT 190
Query: 412 KRMEEEAVERKSSIRLSEETLR 433
+R +++ + +I LS+ R
Sbjct: 191 RRFQQDN-RPQGTISLSQNERR 211
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P + K+LV+GD VGKTS + +V F +YK T+GVDF+ K++
Sbjct: 11 PPRTDYAFKVLVVGDPRVGKTSIINRYVHGSFDIHYKLTLGVDFALKVI 59
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 9/63 (14%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP---VKLQI 226
++ +L+ GD VGKTS + +V F +YK T+GVDF+ K++ RP ++LQ+
Sbjct: 17 AFKVLVVGDPRVGKTSIINRYVHGSFDIHYKLTLGVDFALKVIH------RPSSIIRLQL 70
Query: 227 WDI 229
DI
Sbjct: 71 RDI 73
>gi|225718210|gb|ACO14951.1| Ras-related protein Rab-38 [Caligus clemensi]
Length = 194
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 108/172 (62%), Gaps = 5/172 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ GD GK++Y++ + + F ++Y TVGVDF K+L + G ++LQ+WDIA
Sbjct: 18 YKVLVIGDVNAGKSAYIRRYTEGNFSEDYLATVGVDFHLKVLHLLR--GLEIRLQLWDIA 75
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R Y++ S G +IM+D TN SF +V +WK +LD+ C L G +P +L+++
Sbjct: 76 GQERFSKMTRAYFKGSVGALIMYDSTNLGSFRAVQKWKKELDATCSLPEGQNIPAMLIST 135
Query: 361 KCDLP--DRQVEINEIEAVCHQYNFM-SWIEVSSKEHLMIEDSMNFLVDRII 409
K DLP + + +E+ + F+ W + SSK +++S++F++ I+
Sbjct: 136 KNDLPPCENIPQGSEMSDFLEENGFIPRWFQTSSKTGEYVQESIDFMIKLIL 187
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ GD GK++Y++ + + F ++Y TVGVDF K+L + G ++LQ+WDI
Sbjct: 18 YKVLVIGDVNAGKSAYIRRYTEGNFSEDYLATVGVDFHLKVLHLLR--GLEIRLQLWDI 74
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
S + K+LVIGD GK++Y++ + + F ++Y TVGVDF K+L
Sbjct: 12 SSESRLYKVLVIGDVNAGKSAYIRRYTEGNFSEDYLATVGVDFHLKVL 59
>gi|380015232|ref|XP_003691611.1| PREDICTED: LOW QUALITY PROTEIN: phosphotriesterase-related
protein-like [Apis florea]
Length = 547
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ L+ GD VGKT+ V+ + + KF NYK T+G DF+ K L + LQ+WD+A
Sbjct: 353 FKFLVIGDYGVGKTALVRRYTEGKFTSNYKITIGADFAIKTLDWDPL--TKINLQLWDVA 410
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +R+ M+RVYY+ + ++FD++ +F+S+ +W DL K L +G+ +P +LLA+
Sbjct: 411 GHERFGYMTRVYYKYAVAAALVFDISRIATFQSIKKWLCDLREKVTLPDGSNIPVVLLAN 470
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCD+P V +I C + N +W S+KE+ ++ +M +LV+ ++ +K
Sbjct: 471 KCDIPCPVVPTEQIARFCKENNIGAWYVTSAKENTNVDVAMRYLVENVLKTK 522
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K LVIGD VGKT+ V+ + + KF NYK T+G DF+ K L
Sbjct: 350 ELLFKFLVIGDYGVGKTALVRRYTEGKFTSNYKITIGADFAIKTL 394
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ L+ GD VGKT+ V+ + + KF NYK T+G DF+ K L + LQ+WD+
Sbjct: 353 FKFLVIGDYGVGKTALVRRYTEGKFTSNYKITIGADFAIKTLDWDPL--TKINLQLWDV 409
>gi|225717948|gb|ACO14820.1| Ras-related protein Rab-38 [Caligus clemensi]
Length = 314
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 106/168 (63%), Gaps = 5/168 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ GD GK++Y++ + + F ++Y TVGVDF K+L + G ++LQ+WDIA
Sbjct: 18 YKVLVIGDVNAGKSAYIRRYTEGNFSEDYLATVGVDFHLKVLHLLR--GLEIRLQLWDIA 75
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R Y++ S G +IM+D TN SF +V +WK +LD+ C L G +P +L+++
Sbjct: 76 GQERFSKMTRAYFKGSVGALIMYDSTNLGSFRAVQKWKKELDATCSLPEGQNIPAMLIST 135
Query: 361 KCDLP--DRQVEINEIEAVCHQYNFM-SWIEVSSKEHLMIEDSMNFLV 405
K DLP + + +E+ + F+ W + SSK +++S++F++
Sbjct: 136 KNDLPPCENIPQGSEMSDFLEENGFIPRWFQTSSKTGEYVQESIDFMI 183
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ GD GK++Y++ + + F ++Y TVGVDF K+L + G ++LQ+WDI
Sbjct: 18 YKVLVIGDVNAGKSAYIRRYTEGNFSEDYLATVGVDFHLKVLHLLR--GLEIRLQLWDI 74
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
S + K+LVIGD GK++Y++ + + F ++Y TVGVDF K+L
Sbjct: 12 SSESRLYKVLVIGDVNAGKSAYIRRYTEGNFSEDYLATVGVDFHLKVL 59
>gi|225718126|gb|ACO14909.1| Ras-related protein Rab-38 [Caligus clemensi]
Length = 314
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 107/172 (62%), Gaps = 5/172 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ GD GK++Y++ + F ++Y TVGVDF K+L + G ++LQ+WDIA
Sbjct: 18 YKVLVIGDVNAGKSAYIRRYTGGNFSEDYLATVGVDFHLKVLHLLR--GLEIRLQLWDIA 75
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R Y++ S G +IM+D TN SF +V +WK +LD+ C L G +P +L+++
Sbjct: 76 GQERFSKMTRAYFKGSVGALIMYDSTNLGSFRAVQKWKKELDATCSLPEGQNIPAMLIST 135
Query: 361 KCDLP--DRQVEINEIEAVCHQYNFM-SWIEVSSKEHLMIEDSMNFLVDRII 409
K DLP + + +E+ + F+ W + SSK +++S++F++ I+
Sbjct: 136 KNDLPPCENIPQGSEMSDFLEENGFIPRWFQTSSKTGEYVQESIDFMIKLIL 187
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ GD GK++Y++ + F ++Y TVGVDF K+L + G ++LQ+WDI
Sbjct: 18 YKVLVIGDVNAGKSAYIRRYTGGNFSEDYLATVGVDFHLKVLHLLR--GLEIRLQLWDI 74
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
S + K+LVIGD GK++Y++ + F ++Y TVGVDF K+L
Sbjct: 12 SSESRLYKVLVIGDVNAGKSAYIRRYTGGNFSEDYLATVGVDFHLKVL 59
>gi|110760060|ref|XP_001120743.1| PREDICTED: ras-related protein Rab-32-like [Apis mellifera]
Length = 218
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ L+ GD VGKT+ V+ + + KF NYK T+G DF+ K L + LQ+WD+A
Sbjct: 24 FKFLVIGDYGVGKTALVRRYTEGKFTSNYKITIGADFAIKTLDWDPLT--KINLQLWDVA 81
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +R+ M+RVYY+ + ++FD++ +F+S+ +W DL K L +G+ +P +LLA+
Sbjct: 82 GHERFGYMTRVYYKYAVAAALVFDISRIATFQSIKKWLCDLREKVTLPDGSNIPVVLLAN 141
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCD+P V +I C + N +W S+KE+ ++ +M +LV+ ++ +K
Sbjct: 142 KCDIPCPVVPTEQIARFCKENNIGAWYVTSAKENTNVDVAMRYLVENVLKTK 193
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K LVIGD VGKT+ V+ + + KF NYK T+G DF+ K L
Sbjct: 21 ELLFKFLVIGDYGVGKTALVRRYTEGKFTSNYKITIGADFAIKTL 65
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ L+ GD VGKT+ V+ + + KF NYK T+G DF+ K L + LQ+WD+
Sbjct: 24 FKFLVIGDYGVGKTALVRRYTEGKFTSNYKITIGADFAIKTLDWDPLT--KINLQLWDV 80
>gi|301786130|ref|XP_002928479.1| PREDICTED: ras-related protein Rab-7L1-like isoform 2 [Ailuropoda
melanoleuca]
Length = 179
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 99/173 (57%), Gaps = 26/173 (15%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG-------------------------- 41
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 42 GQERFTSMTRLYYRDASACVIMFDVTNAMTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 101
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V ++++ + F W E S KE+ I ++M L+++++ + R
Sbjct: 102 KCDLSPWAVSRDQVDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMSNSR 154
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG 41
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG 204
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG 41
>gi|208609964|ref|NP_001129135.1| ras-related protein Rab-7L1 isoform 2 [Homo sapiens]
gi|194384084|dbj|BAG64815.1| unnamed protein product [Homo sapiens]
Length = 179
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 97/169 (57%), Gaps = 26/169 (15%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG-------------------------- 41
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 42 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 101
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL V ++I+ + F W E S KE+ I ++M L+++++
Sbjct: 102 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMM 150
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG 41
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG 204
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG 41
>gi|440795581|gb|ELR16701.1| Ras subfamily protein [Acanthamoeba castellanii str. Neff]
Length = 249
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 115/206 (55%), Gaps = 14/206 (6%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYK------------NTVGVDFSTKLLSHKKY 287
+ IL+ GD GKT+ ++ V N F D YK +T+GVDF+ K S K
Sbjct: 36 VFKILVVGDIGAGKTAIIRRAVDNIFSDAYKGRTRKPDPDPTQSTIGVDFALK--SVKLN 93
Query: 288 GGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCIL 347
LQ+WDIAGQ+RY ++RVYY+ + +++FDLT SFE+V +WK D+D+K L
Sbjct: 94 PKTTTWLQLWDIAGQERYGNLTRVYYKEAVAALVVFDLTRPASFEAVRKWKSDIDAKVAL 153
Query: 348 DNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
NG +PC+L+A+K DL + + + + C ++ F+ W+ S+K+ + I ++M +
Sbjct: 154 ANGDPIPCILVANKSDLVNVPLNEDVMNQYCKEHGFLDWMVTSAKKDVGITEAMTAITQH 213
Query: 408 IICSKRMEEEAVERKSSIRLSEETLR 433
I+ ++++ E I L+ R
Sbjct: 214 IMARSPIDDDLDEDDDLIHLASNEAR 239
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 12/55 (21%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYK------------NTVGVDFSTK 148
E V KILV+GD GKT+ ++ V N F D YK +T+GVDF+ K
Sbjct: 34 ELVFKILVVGDIGAGKTAIIRRAVDNIFSDAYKGRTRKPDPDPTQSTIGVDFALK 88
Score = 38.1 bits (87), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 14/71 (19%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYK------------NTVGVDFSTKLLSHKKYG 218
+ IL+ GD GKT+ ++ V N F D YK +T+GVDF+ K S K
Sbjct: 37 FKILVVGDIGAGKTAIIRRAVDNIFSDAYKGRTRKPDPDPTQSTIGVDFALK--SVKLNP 94
Query: 219 GRPVKLQIWDI 229
LQ+WDI
Sbjct: 95 KTTTWLQLWDI 105
>gi|403344496|gb|EJY71594.1| GTP-binding protein [Oxytricha trifallax]
gi|403370683|gb|EJY85209.1| GTP-binding protein [Oxytricha trifallax]
Length = 246
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 116/200 (58%), Gaps = 9/200 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++ GDS VGKTS +Q F ++F + +K T+G DFS K +S G+ V LQIWD AGQ
Sbjct: 35 VVAIGDSGVGKTSLIQMFEHSRFTEAFKPTIGADFSNKEVS---INGKIVTLQIWDTAGQ 91
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+RY + +Y+ +D C+I +DL+N SFE++ QWK K ++ N P +++ +K
Sbjct: 92 ERYQSLGTAFYRGADCCLIAYDLSNSSSFENITQWKQSFMQKGMIVNPETFPFMIVGNKL 151
Query: 363 DLPD--RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
D+ + RQV + C + M +E S++ ++ +E + L + I KR EE ++
Sbjct: 152 DIAEDSRQVSEQAAKRYCQENGNMPHVETSARNNVNVEQAFVQLAE--IALKRQEE--MQ 207
Query: 421 RKSSIRLSEETLRDDQPKKL 440
+++ +LS++ R+ ++L
Sbjct: 208 KRTDEQLSQDRARERGAQRL 227
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++ GDS VGKTS +Q F ++F + +K T+G DFS K +S G+ V LQIWD
Sbjct: 35 VVAIGDSGVGKTSLIQMFEHSRFTEAFKPTIGADFSNKEVS---INGKIVTLQIWD 87
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+K++ IGDS VGKTS +Q F ++F + +K T+G DFS K +S
Sbjct: 33 VKVVAIGDSGVGKTSLIQMFEHSRFTEAFKPTIGADFSNKEVS 75
>gi|290561803|gb|ADD38299.1| Ras-related protein Rab-32 [Lepeophtheirus salmonis]
Length = 308
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 103/172 (59%), Gaps = 5/172 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y I++ G+ GK+++++ F+ + F +NY TVGVDF K+L KK V+LQ+WDIA
Sbjct: 18 YKIIVIGEVNSGKSAFIRRFIDDSFCENYYATVGVDFHLKVLQFKK--DLEVRLQLWDIA 75
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R Y++ S G I+++D N +F SV +WK +LD KC L G +P +LL++
Sbjct: 76 GQERFSKMTRAYFKGSVGAIVLYDSGNVNTFNSVKKWKEELDEKCALPEGQNVPAILLSN 135
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFM-SWIEVSSKEHLMIEDSMNFLVDRII 409
K D+P EI F+ W + S+K I++ +NFL+ I+
Sbjct: 136 KSDMPKHPNLPSDEEISKFVETNGFVPKWFKTSAKTGENIQECINFLIKVIL 187
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 158 RPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 217
R + + I Y I++ G+ GK+++++ F+ + F +NY TVGVDF K+L KK
Sbjct: 5 RRFNYDAGIDNRLYKIIVIGEVNSGKSAFIRRFIDDSFCENYYATVGVDFHLKVLQFKK- 63
Query: 218 GGRPVKLQIWDI 229
V+LQ+WDI
Sbjct: 64 -DLEVRLQLWDI 74
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 154
+ KI+VIG+ GK+++++ F+ + F +NY TVGVDF K+L KK
Sbjct: 17 LYKIIVIGEVNSGKSAFIRRFIDDSFCENYYATVGVDFHLKVLQFKK 63
>gi|325190253|emb|CCA24730.1| Rab32 family GTPase putative [Albugo laibachii Nc14]
Length = 215
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 124/199 (62%), Gaps = 4/199 (2%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
++P Q +L+ GD+ GK+S ++ +V F+++++ T+GVDFS K + G V
Sbjct: 7 VNPAQDAVIKVLVLGDAATGKSSIIRRYVYGSFVEHHQTTIGVDFSLKAAT---VNGTTV 63
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
++Q+WDIAGQ+ + +SRVYY+++ ++++D+++ ++FESV++WK ++++K L N
Sbjct: 64 RVQLWDIAGQEHFRALSRVYYKDALAALLVYDISSPETFESVLKWKKEIETKVELPNHKP 123
Query: 353 LPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
LP +L +K DL + V+ + + + F +W + S+KE+ I+ ++ L++ ++ +
Sbjct: 124 LPVVLCGNKSDLTE-SVDRDFLTSFSESNGFTAWFDTSAKENTNIDAALQALIEGVLKHQ 182
Query: 413 RMEEEAVERKSSIRLSEET 431
+ E E + +IR ++ T
Sbjct: 183 DIFERKKEDRGTIRPTDTT 201
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
+P Q +L+ GD+ GK+S ++ +V F+++++ T+GVDFS K + G V+
Sbjct: 8 NPAQDAVIKVLVLGDAATGKSSIIRRYVYGSFVEHHQTTIGVDFSLKAAT---VNGTTVR 64
Query: 224 LQIWDI 229
+Q+WDI
Sbjct: 65 VQLWDI 70
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 33/43 (76%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ V+K+LV+GD+ GK+S ++ +V F+++++ T+GVDFS K
Sbjct: 12 DAVIKVLVLGDAATGKSSIIRRYVYGSFVEHHQTTIGVDFSLK 54
>gi|348578127|ref|XP_003474835.1| PREDICTED: ras-related protein Rab-7L1-like isoform 2 [Cavia
porcellus]
Length = 180
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 99/173 (57%), Gaps = 26/173 (15%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS V+ + Q+ F +YK+TVG
Sbjct: 8 FKVLVVGDAAVGKTSLVRRYSQDCFSKHYKSTVG-------------------------- 41
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 42 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 101
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V ++I+ + F W E S KE+ I ++M LV++++ + R
Sbjct: 102 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLVEKMMSNSR 154
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142
+ K+LV+GD+ VGKTS V+ + Q+ F +YK+TVG
Sbjct: 7 LFKVLVVGDAAVGKTSLVRRYSQDCFSKHYKSTVG 41
>gi|344277038|ref|XP_003410312.1| PREDICTED: ras-related protein Rab-7L1-like isoform 2 [Loxodonta
africana]
Length = 180
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 99/173 (57%), Gaps = 26/173 (15%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG-------------------------- 41
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L +G +PCLLLA+
Sbjct: 42 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLAN 101
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
KCDL V ++I+ + F W E S KE+ I ++M L+++++ + R
Sbjct: 102 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMNNSR 154
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG 41
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG 204
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG 41
>gi|300120922|emb|CBK21164.2| unnamed protein product [Blastocystis hominis]
Length = 210
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 103/167 (61%), Gaps = 3/167 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GD+ GKTS ++ ++ + F + + T VDFS K+L+ R +Q+WDIAGQ
Sbjct: 11 VIVIGDAATGKTSIIKQYIYSTFSEQHVATATVDFSCKVLTKNDVTYR---VQLWDIAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+RY +SRVYY+N+ GC I+ D N KS E+V +WK+ L+ L N LP +LL +K
Sbjct: 68 ERYQRISRVYYRNALGCFIVCDNVNAKSLENVEKWKNQLNENVKLPNDKPLPVILLVNKS 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
DL + + ++I+ VC + WI VS+K + I DS++ L+D I+
Sbjct: 128 DLTENGLSDDQIKEVCEKCGIAQWIRVSAKTAMNISDSVDKLLDSIV 174
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
S E V+K++VIGD+ GKTS ++ ++ + F + + T VDFS K+L+
Sbjct: 3 SGDEKVVKVIVIGDAATGKTSIIKQYIYSTFSEQHVATATVDFSCKVLT 51
Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+++ GD+ GKTS ++ ++ + F + + T VDFS K+L+ R +Q+WDI
Sbjct: 11 VIVIGDAATGKTSIIKQYIYSTFSEQHVATATVDFSCKVLTKNDVTYR---VQLWDI 64
>gi|345318875|ref|XP_001520779.2| PREDICTED: ras-related protein Rab-7L1-like, partial
[Ornithorhynchus anatinus]
Length = 186
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 90/141 (63%), Gaps = 2/141 (1%)
Query: 269 YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNR 328
Y+ + VDF+ K+L V+LQ+WDIAGQ+R+ M+R+YY+ + C+IMFD+TN
Sbjct: 18 YEYLLIVDFALKVLQWSD--SEMVRLQLWDIAGQERFTSMTRLYYREASACVIMFDVTNA 75
Query: 329 KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIE 388
+F + +WK DLDSK L NG +PCLLLA+KCDL V ++I+ + F W E
Sbjct: 76 TTFSNSQRWKQDLDSKLTLPNGEPVPCLLLANKCDLTPWAVTRDQIDRFSKENGFTGWTE 135
Query: 389 VSSKEHLMIEDSMNFLVDRII 409
S KE+ I ++M LV++++
Sbjct: 136 TSVKENKNINEAMRVLVEKMM 156
>gi|299472101|emb|CBN77086.1| Rab32B, RAB family GTPase [Ectocarpus siliculosus]
Length = 570
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 102/174 (58%), Gaps = 7/174 (4%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
T +L+ G++ GK+S + FV N+F +Y +TVG D++ K +S + GR V+LQ+WDI
Sbjct: 351 TCKVLVVGNAKCGKSSIISRFVSNRFSSDYNSTVGADYAMKDVSLEN--GRQVRLQLWDI 408
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQDR+ ++R Y++ + G +++ D+T +F+++V+WK ++D C + G LP L A
Sbjct: 409 AGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWKEEIDLWC-QNEGCDLPVYLFA 467
Query: 360 SKCDL----PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+KCDL D + +E C F W S+K I+ +M LV+ +
Sbjct: 468 NKCDLLKEVQDSFLAGARMEKTCRDAGFAGWHITSAKRGDNIDTAMTSLVEHAL 521
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 166 IQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQ 225
+ T + +L+ G++ GK+S + FV N+F +Y +TVG D++ K +S + GR V+LQ
Sbjct: 347 VPTVTCKVLVVGNAKCGKSSIISRFVSNRFSSDYNSTVGADYAMKDVSLEN--GRQVRLQ 404
Query: 226 IWDI 229
+WDI
Sbjct: 405 LWDI 408
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
K+LV+G++ GK+S + FV N+F +Y +TVG D++ K +S
Sbjct: 353 KVLVVGNAKCGKSSIISRFVSNRFSSDYNSTVGADYAMKDVS 394
>gi|225719646|gb|ACO15669.1| Ras-related protein Rab-38 [Caligus clemensi]
Length = 314
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 107/172 (62%), Gaps = 5/172 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ D GK++Y++ + + F ++Y TVGVDF K+L + G ++LQ+WDIA
Sbjct: 18 YKVLVIRDVNAGKSAYIRRYTEGNFSEDYLATVGVDFHLKVLHLLR--GLEIRLQLWDIA 75
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R Y++ S G +IM+D TN SF +V +WK +LD+ C L G +P +L+++
Sbjct: 76 GQERFSKMTRAYFKGSVGALIMYDSTNLGSFRAVQKWKKELDATCSLPEGQNIPAMLIST 135
Query: 361 KCDLP--DRQVEINEIEAVCHQYNFM-SWIEVSSKEHLMIEDSMNFLVDRII 409
K DLP + + +E+ + F+ W + SSK +++S++F++ I+
Sbjct: 136 KNDLPPCENIPQGSEMSDFLEENGFIPRWFQTSSKTGEYVQESIDFMIKLIL 187
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ D GK++Y++ + + F ++Y TVGVDF K+L + G ++LQ+WDI
Sbjct: 18 YKVLVIRDVNAGKSAYIRRYTEGNFSEDYLATVGVDFHLKVLHLLR--GLEIRLQLWDI 74
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
S + K+LVI D GK++Y++ + + F ++Y TVGVDF K+L
Sbjct: 12 SSESRLYKVLVIRDVNAGKSAYIRRYTEGNFSEDYLATVGVDFHLKVL 59
>gi|123417386|ref|XP_001305092.1| GTP-binding protein YPTM2 [Trichomonas vaginalis G3]
gi|62869549|gb|AAX97495.1| small Rab GTPase Rab1a [Trichomonas vaginalis]
gi|72537672|gb|AAZ73762.1| small Rab GTPase [Trichomonas vaginalis]
gi|72537674|gb|AAZ73763.1| small Rab GTPase [Trichomonas vaginalis]
gi|121886589|gb|EAX92162.1| GTP-binding protein YPTM2, putative [Trichomonas vaginalis G3]
Length = 202
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 103/159 (64%), Gaps = 8/159 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S VGK+ + F ++ F DNY +T+GVDF + + + G+ +KLQIWD A
Sbjct: 10 FKVLIIGNSGVGKSCLLLRFAEDMFSDNYISTIGVDFKIRKI---ELDGKSIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+ S+G ++++D+TNR SFE V W ++D+ D + LL+ +
Sbjct: 67 GQERFRTITKSYYRGSNGIVVVYDITNRDSFEQVQHWMSEIDNHASQD----VCRLLVGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
K DLPDR V+ E EA+ Q+ + ++E S+KE L +E+
Sbjct: 123 KADLPDRAVKTEEGEALARQFG-IPFMETSAKESLNVEN 160
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+D + + K+L+IG+S VGK+ + F ++ F DNY +T+GVDF +
Sbjct: 3 ANDYDYLFKVLIIGNSGVGKSCLLLRFAEDMFSDNYISTIGVDFKIR 49
>gi|242012932|ref|XP_002427179.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus
corporis]
gi|212511462|gb|EEB14441.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus
corporis]
Length = 223
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 99/163 (60%), Gaps = 2/163 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ GD VGKT+ ++ +V+ KF NYK T+G DFS K + V +Q+WDIAG
Sbjct: 29 ILVVGDYGVGKTAVIRRYVEGKFTSNYKVTIGADFSIKTMPWD--STTEVNIQLWDIAGN 86
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
++ MSRVYY+ + +I+ D++ +F S+ W D+ K IL +G +P ++L +KC
Sbjct: 87 EKLTFMSRVYYKYAAAAVIVIDISRIATFHSLQNWLKDIRDKVILSDGLPVPIIILVNKC 146
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLV 405
D+ + V ++ + + QY + W + S+K ++ I+D+M F++
Sbjct: 147 DINEISVPLDALNKLSKQYGVLKWFKTSAKCNINIDDAMKFII 189
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 33/45 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E +LKILV+GD VGKT+ ++ +V+ KF NYK T+G DFS K +
Sbjct: 24 EIMLKILVVGDYGVGKTAVIRRYVEGKFTSNYKVTIGADFSIKTM 68
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
IL+ GD VGKT+ ++ +V+ KF NYK T+G DFS K + V +Q+WDI
Sbjct: 29 ILVVGDYGVGKTAVIRRYVEGKFTSNYKVTIGADFSIKTMPWD--STTEVNIQLWDI 83
>gi|403354847|gb|EJY76983.1| hypothetical protein OXYTRI_01389 [Oxytricha trifallax]
Length = 785
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 121/209 (57%), Gaps = 11/209 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++ GDS VGKTS +Q F KF +N+K T+G DFS K + + GR V LQIWD AGQ
Sbjct: 575 VVAIGDSGVGKTSLIQMFENTKFTENFKPTIGADFSNKEI---QVNGRIVTLQIWDTAGQ 631
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+RY + +Y+ +D C +++D+TN +SFE+VV WK+ K ++ + P +++ +K
Sbjct: 632 ERYQSLGTAFYRGADCCFLVYDVTNLQSFENVVNWKNSFLGKSMVVSPESFPFMVVGNKI 691
Query: 363 DLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVD-----RIICSKRMEE 416
DL DRQV ++ + VC++ M + E S++ + +E + L + +I ++++E
Sbjct: 692 DLESDRQVSFDQGQRVCNENGEMLFSEASARTNTNVEAAFVKLAEQALNRQIEMQRQLDE 751
Query: 417 EAVERKSSIRLSEETLRDDQPKKLVPADK 445
R++ R E+ + +P + PA +
Sbjct: 752 SMNNRRAQER--EKNKKLGRPDRKGPAQQ 778
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++ GDS VGKTS +Q F KF +N+K T+G DFS K + + GR V LQIWD
Sbjct: 575 VVAIGDSGVGKTSLIQMFENTKFTENFKPTIGADFSNKEI---QVNGRIVTLQIWD 627
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 31/45 (68%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ + +K++ IGDS VGKTS +Q F KF +N+K T+G DFS K
Sbjct: 568 EKKCFIKVVAIGDSGVGKTSLIQMFENTKFTENFKPTIGADFSNK 612
>gi|449687786|ref|XP_004211547.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-32A-like
[Hydra magnipapillata]
Length = 322
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 98/143 (68%), Gaps = 4/143 (2%)
Query: 269 YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNR 328
+K +GVDF+ K+L+ + ++LQ+WDI+G++R+ M+RVYY+ + GC+I+FD+T
Sbjct: 88 FKLKIGVDFALKVLNWDE--TTLIRLQLWDISGEERFGKMNRVYYKEAVGCMIIFDVTQP 145
Query: 329 KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINE--IEAVCHQYNFMSW 386
++FE+V WK DLDSK L NG +PC+LLA+KCDLP N+ ++ C + F SW
Sbjct: 146 ETFENVWNWKQDLDSKVQLPNGQPVPCVLLANKCDLPKVGTVNNKSYMDKYCVEKGFHSW 205
Query: 387 IEVSSKEHLMIEDSMNFLVDRII 409
E S+KE++ +++ LV++I+
Sbjct: 206 FETSAKENINVDNVAKSLVEKIL 228
>gi|327278639|ref|XP_003224068.1| PREDICTED: ras-related protein Rab-7L1-like isoform 2 [Anolis
carolinensis]
Length = 178
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 95/169 (56%), Gaps = 26/169 (15%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GD+TVGKTS VQ + + F +YK+TVG
Sbjct: 2 FKVLIIGDATVGKTSLVQRYANDSFNKHYKSTVG-------------------------- 35
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+ + C+IMFD+T+ +F S +WK DLDSK L +G +PCLLLA+
Sbjct: 36 GQERFTSMTRLYYKEASACVIMFDVTSVSTFTSCQKWKQDLDSKLRLPDGNPVPCLLLAN 95
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL V EI+ + F W E S KE+ I +SM L+++++
Sbjct: 96 KCDLYPWSVTREEIDRFSKENGFTGWTETSVKENKNINESMRVLIEKMM 144
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142
+ K+L+IGD+TVGKTS VQ + + F +YK+TVG
Sbjct: 1 MFKVLIIGDATVGKTSLVQRYANDSFNKHYKSTVG 35
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG 204
+ +LI GD+TVGKTS VQ + + F +YK+TVG
Sbjct: 2 FKVLIIGDATVGKTSLVQRYANDSFNKHYKSTVG 35
>gi|313228374|emb|CBY23525.1| unnamed protein product [Oikopleura dioica]
gi|313241691|emb|CBY33914.1| unnamed protein product [Oikopleura dioica]
Length = 208
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 118/204 (57%), Gaps = 27/204 (13%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ L+ GD VGKTS ++ +V + F YK T+GVDF+ K+++ ++LQ+WDIA
Sbjct: 6 FKTLVIGDIGVGKTSLIKRYVHHVFGSTYKPTIGVDFALKVINWD--SETIIRLQLWDIA 63
Query: 301 GQDRYICMSRVYYQNSDGCIIMF--DLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
GQ+R+ M+RVYY+++ I+F D+ +FE V +WK DLDSK +L +G+ +PC LL
Sbjct: 64 GQERFGTMTRVYYRDAVAAFIVFVLDINRNTTFEGVRKWKDDLDSKVMLADGSKIPCFLL 123
Query: 359 ASKCDLPDRQVEINEIEAVCHQYN-------FMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
A+K D+ +E +EI+A Q + F W S+KE+ I+ + + L+ II +
Sbjct: 124 ANKIDM----LEESEIDAKKAQLDDFVAEKEFAGWFPTSAKENKNIDRAASELIRTIIDN 179
Query: 412 KRMEEEAVERKSSIRLSEETLRDD 435
++ RLS T+ DD
Sbjct: 180 EK------------RLSPPTIDDD 191
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
L+ GD VGKTS ++ +V + F YK T+GVDF+ K+++ ++LQ+WDI
Sbjct: 9 LVIGDIGVGKTSLIKRYVHHVFGSTYKPTIGVDFALKVINWD--SETIIRLQLWDI 62
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K LVIGD VGKTS ++ +V + F YK T+GVDF+ K+++
Sbjct: 2 VEYLFKTLVIGDIGVGKTSLIKRYVHHVFGSTYKPTIGVDFALKVIN 48
>gi|148237858|ref|NP_001091380.1| uncharacterized protein LOC100037231 [Xenopus laevis]
gi|125858912|gb|AAI29780.1| LOC100037231 protein [Xenopus laevis]
Length = 209
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 105/174 (60%), Gaps = 2/174 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ GD VGKTS +Q +V N F Y+ T+GVDF+ K+++ V+LQ+WDIAGQ
Sbjct: 12 VLVVGDLGVGKTSIIQRYVHNVFSQCYRATIGVDFALKIVNWDL--DTVVRLQLWDIAGQ 69
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ M+R+YY+ + G +++ DL + ESV +WK DLDSK L NG +P +LL +KC
Sbjct: 70 ERFGHMTRLYYREAVGAVVVCDLGRVATVESVSRWKEDLDSKVCLQNGNPIPVILLGNKC 129
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
D ++ +E + + F S+KE++ I+ +++ L+ II + E
Sbjct: 130 DQVPLGTSVSNLEQLGQELGFSYSHVTSAKENVNIDMAISSLIKEIIANDEDSE 183
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+L+ GD VGKTS +Q +V N F Y+ T+GVDF+ K+++ V+LQ+WDI
Sbjct: 12 VLVVGDLGVGKTSIIQRYVHNVFSQCYRATIGVDFALKIVNWDL--DTVVRLQLWDI 66
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LV+GD VGKTS +Q +V N F Y+ T+GVDF+ K+++
Sbjct: 7 EILCKVLVVGDLGVGKTSIIQRYVHNVFSQCYRATIGVDFALKIVN 52
>gi|154414735|ref|XP_001580394.1| Ras family protein [Trichomonas vaginalis G3]
gi|121914611|gb|EAY19408.1| Ras family protein [Trichomonas vaginalis G3]
Length = 215
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 102/173 (58%), Gaps = 5/173 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ G+ GKTS ++ +VQ F + YK T+GVDF+TK + + + LQ+WDIAGQ
Sbjct: 17 VLVVGEMGTGKTSLIRQYVQGFFSEFYKTTIGVDFATKEIEWDE--KITISLQLWDIAGQ 74
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+RY M+RVYYQ + ++FD+T +S E V +WK D++SK +PCLLL +K
Sbjct: 75 ERYGNMTRVYYQEAVAAWVVFDVTRLQSLEMVKEWKKDIESKVFTSTDQPIPCLLLGNKI 134
Query: 363 DLPDR---QVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
DL E+E C + +F+ + E S++ +E++ +LV ++ +K
Sbjct: 135 DLVSDGKWNKTPEEMEEFCKENHFLKFFETSARSRTNVEEAARYLVQYVMDNK 187
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 31/41 (75%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+LK+LV+G+ GKTS ++ +VQ F + YK T+GVDF+TK
Sbjct: 14 ILKVLVVGEMGTGKTSLIRQYVQGFFSEFYKTTIGVDFATK 54
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+L+ G+ GKTS ++ +VQ F + YK T+GVDF+TK + + + LQ+WDI
Sbjct: 17 VLVVGEMGTGKTSLIRQYVQGFFSEFYKTTIGVDFATKEIEWDE--KITISLQLWDI 71
>gi|66819641|ref|XP_643480.1| Rab GTPase [Dictyostelium discoideum AX4]
gi|75017350|sp|Q8MXQ2.2|RB32C_DICDI RecName: Full=Ras-related protein Rab-32C
gi|60471632|gb|EAL69588.1| Rab GTPase [Dictyostelium discoideum AX4]
Length = 224
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 102/183 (55%), Gaps = 7/183 (3%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKTS +Q + N F YK T+GVDF K+L + G+ V LQ+WDIAGQ
Sbjct: 31 ILVVGKLACGKTSIIQRYCHNNFQPKYKPTIGVDFQQKVL---EIMGQKVLLQLWDIAGQ 87
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ M+RVY+QN+ G +I+FD T +F WK D+D C N LP +LLA+KC
Sbjct: 88 ERFGHMTRVYFQNAHGAVIVFDATRSGTFLGAKAWKDDIDY-CF--NNENLPTILLANKC 144
Query: 363 DLPDRQVEINE-IEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
DL E I C Q F + S+KE I +++ LV I+ S + +E++
Sbjct: 145 DLLTPPYTFPEDINTFCEQNRFNKYFYTSAKEDTGINEALEELVKIILESYQTQEQSTGF 204
Query: 422 KSS 424
K S
Sbjct: 205 KLS 207
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
IL+ G GKTS +Q + N F YK T+GVDF K+L + G+ V LQ+WDI
Sbjct: 31 ILVVGKLACGKTSIIQRYCHNNFQPKYKPTIGVDFQQKVL---EIMGQKVLLQLWDI 84
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
LKILV+G GKTS +Q + N F YK T+GVDF K+L
Sbjct: 29 LKILVVGKLACGKTSIIQRYCHNNFQPKYKPTIGVDFQQKVL 70
>gi|330791055|ref|XP_003283610.1| Rab GTPase [Dictyostelium purpureum]
gi|325086470|gb|EGC39859.1| Rab GTPase [Dictyostelium purpureum]
Length = 208
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 101/176 (57%), Gaps = 7/176 (3%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKTS +Q + N F YK T+GVDF KLL + G+ V LQ+WDIAGQ
Sbjct: 16 ILVVGKLACGKTSIIQRYCHNHFQPKYKPTIGVDFQQKLL---EIMGQKVLLQLWDIAGQ 72
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ M+RVY+QN+ G +++FD T +F WK D+D C N LP +LLA+KC
Sbjct: 73 ERFGHMTRVYFQNAHGAVVVFDSTRSGTFLGAKAWKDDIDY-CF--NKEDLPTILLANKC 129
Query: 363 DLPDRQVEINE-IEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
DL + E I+A C F + S+KE I +++ LV I+ S + +E+
Sbjct: 130 DLLTQPYTFPEDIDAFCQTNRFHKYFYTSAKEDTGINEAIEELVKVILESYQTQEQ 185
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
IL+ G GKTS +Q + N F YK T+GVDF KLL + G+ V LQ+WDI
Sbjct: 16 ILVVGKLACGKTSIIQRYCHNHFQPKYKPTIGVDFQQKLL---EIMGQKVLLQLWDI 69
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 101 RPSDAETV-LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ SD E + LKILV+G GKTS +Q + N F YK T+GVDF KLL
Sbjct: 5 KNSDDEAISLKILVVGKLACGKTSIIQRYCHNHFQPKYKPTIGVDFQQKLL 55
>gi|407421093|gb|EKF38806.1| rab1 small GTP-binding protein, putative [Trypanosoma cruzi
marinkellei]
Length = 244
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 106/193 (54%), Gaps = 25/193 (12%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+ GKT ++ +V FL K T+GVDF+ K + H R + LQ+WDIA
Sbjct: 11 FKVLIIGEGGTGKTCLIRRYVHGIFLATNKATIGVDFALKDVVHAATN-RNITLQLWDIA 69
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCIL-DNGAMLPCLLLA 359
GQ+RY M+RVYYQ + G II+ D+T ++ + V+WK D+DSK L +G +PC+LL
Sbjct: 70 GQERYGQMTRVYYQAAAGAIIVADITRPETLDLAVKWKQDVDSKVFLGSSGKSIPCILLI 129
Query: 360 SKCDL---------------------PDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLM 396
+K DL +R ++ E+ A C ++ F +W S+KE+
Sbjct: 130 NKVDLLPNGMLAASAAEDGTGHSGFADERGIQKTKEEMNAFCKEHGFEAWFVTSAKENKN 189
Query: 397 IEDSMNFLVDRII 409
++ + LVD ++
Sbjct: 190 VDVAFQKLVDCVL 202
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +LI G+ GKT ++ +V FL K T+GVDF+ K + H R + LQ+WDI
Sbjct: 11 FKVLIIGEGGTGKTCLIRRYVHGIFLATNKATIGVDFALKDVVHAAT-NRNITLQLWDI 68
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152
+E + K+L+IG+ GKT ++ +V FL K T+GVDF+ K + H
Sbjct: 7 SELLFKVLIIGEGGTGKTCLIRRYVHGIFLATNKATIGVDFALKDVVH 54
>gi|71663090|ref|XP_818542.1| small GTP-binding protein [Trypanosoma cruzi strain CL Brener]
gi|70883800|gb|EAN96691.1| small GTP-binding protein, putative [Trypanosoma cruzi]
Length = 243
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 106/193 (54%), Gaps = 25/193 (12%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+ GKT ++ +V FL K T+GVDF+ K + H R + LQ+WDIA
Sbjct: 11 FKVLIIGEGGTGKTCLIRRYVHGIFLATNKATIGVDFALKDVVHAATN-RNITLQLWDIA 69
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCIL-DNGAMLPCLLLA 359
GQ+RY M+RVYYQ + G II+ D+T ++ + V+WK D+DSK L +G +PC+LL
Sbjct: 70 GQERYGQMTRVYYQAAAGAIIVADITRPETLDLAVKWKQDVDSKVFLGSSGKSIPCILLI 129
Query: 360 SKCDL---------------------PDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLM 396
+K DL +R ++ E+ A C ++ F +W S+KE+
Sbjct: 130 NKVDLLPHGVLAASVAEDGTGHPGFADERGIQKTKEEMNAFCTEHGFEAWFVTSAKENKN 189
Query: 397 IEDSMNFLVDRII 409
++ + LVD ++
Sbjct: 190 VDVAFQKLVDCVL 202
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152
+E + K+L+IG+ GKT ++ +V FL K T+GVDF+ K + H
Sbjct: 7 SELLFKVLIIGEGGTGKTCLIRRYVHGIFLATNKATIGVDFALKDVVH 54
>gi|332020863|gb|EGI61261.1| Ras-related protein Rab-32 [Acromyrmex echinatior]
Length = 218
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 103/172 (59%), Gaps = 3/172 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ L+ GD VGKT+ V+ + + KF NYK T+G DF+ K L + LQ+WDIA
Sbjct: 24 FKCLVIGDYGVGKTALVRRYTEGKFSSNYKITIGADFAIKTLDWDP--QTKINLQLWDIA 81
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +R+ M+RVYY+ + ++FD++ +F+S+ +W +DL K L +G+ +P +LLA+
Sbjct: 82 GHERFGYMTRVYYKYAVAAALVFDISRVATFQSMKKWLNDLREKVALPDGSSIPVVLLAN 141
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCD+ V +I C + +W S+K + +E ++ +LVD+++ S+
Sbjct: 142 KCDIS-VAVTNEQISKFCKENKIHAWYATSAKNNTNVEAAIRYLVDKVLNSR 192
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 13/69 (18%)
Query: 90 SPRASVIGFEPRPSDA--------ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
+PRAS R SD E + K LVIGD VGKT+ V+ + + KF NYK T+
Sbjct: 2 TPRAS-----RRDSDVVLSNFGHKEHLFKCLVIGDYGVGKTALVRRYTEGKFSSNYKITI 56
Query: 142 GVDFSTKLL 150
G DF+ K L
Sbjct: 57 GADFAIKTL 65
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
L+ GD VGKT+ V+ + + KF NYK T+G DF+ K L + LQ+WDI
Sbjct: 27 LVIGDYGVGKTALVRRYTEGKFSSNYKITIGADFAIKTLDWDP--QTKINLQLWDI 80
>gi|407853753|gb|EKG06607.1| small GTP-binding protein Rab11, putative,Rab11 GTPase, putative
[Trypanosoma cruzi]
Length = 243
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 106/193 (54%), Gaps = 25/193 (12%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+ GKT ++ +V FL K T+GVDF+ K + H R + LQ+WDIA
Sbjct: 11 FKVLIIGEGGTGKTCLIRRYVHGIFLATNKATIGVDFALKDVVHAATN-RNITLQLWDIA 69
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCIL-DNGAMLPCLLLA 359
GQ+RY M+RVYYQ + G II+ D+T ++ + V+WK D+DSK L +G +PC+LL
Sbjct: 70 GQERYGQMTRVYYQAAAGAIIVADITRPETLDLAVKWKQDVDSKVFLGSSGKSIPCILLI 129
Query: 360 SKCDL---------------------PDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLM 396
+K DL +R ++ E+ A C ++ F +W S+KE+
Sbjct: 130 NKVDLLPHGVLTASIAEDSTGHLGFADERGIQKTKEEMNAFCTEHGFEAWFVTSAKENKN 189
Query: 397 IEDSMNFLVDRII 409
++ + LVD ++
Sbjct: 190 VDVAFQKLVDCVL 202
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +LI G+ GKT ++ +V FL K T+GVDF+ K + H R + LQ+WDI
Sbjct: 11 FKVLIIGEGGTGKTCLIRRYVHGIFLATNKATIGVDFALKDVVHAAT-NRNITLQLWDI 68
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152
+E + K+L+IG+ GKT ++ +V FL K T+GVDF+ K + H
Sbjct: 7 SELLFKVLIIGEGGTGKTCLIRRYVHGIFLATNKATIGVDFALKDVVH 54
>gi|281210797|gb|EFA84963.1| hypothetical protein PPL_01956 [Polysphondylium pallidum PN500]
Length = 795
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 109/188 (57%), Gaps = 7/188 (3%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKTS +Q F ++F YK T+GVDF TK + + V LQ+WDIAGQ
Sbjct: 17 ILVVGKLACGKTSIIQRFCHDEFQSKYKPTIGVDFHTKEM---EVMNIKVILQLWDIAGQ 73
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ M+RVY+QN+DG +++FD T +F +WK D+D C + LP +LLA+K
Sbjct: 74 ERFGHMTRVYFQNADGALVVFDATRVATFHGAKEWKDDIDD-CFSKDA--LPTVLLANKS 130
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DLP + ++IE C Q F++ + S+K+ I +++ LV +I+ + + +
Sbjct: 131 DLPQTTIP-DDIEEFCEQNGFLNCFKTSAKDGTGITEALTDLVTKILKNHMESVKKAPEE 189
Query: 423 SSIRLSEE 430
+L+++
Sbjct: 190 QGFKLTDK 197
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
LKILV+G GKTS +Q F ++F YK T+GVDF TK
Sbjct: 15 LKILVVGKLACGKTSIIQRFCHDEFQSKYKPTIGVDFHTK 54
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
IL+ G GKTS +Q F ++F YK T+GVDF TK + + V LQ+WDI
Sbjct: 17 ILVVGKLACGKTSIIQRFCHDEFQSKYKPTIGVDFHTKEM---EVMNIKVILQLWDI 70
>gi|307198015|gb|EFN79075.1| Ras-related protein Rab-32 [Harpegnathos saltator]
Length = 217
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 113/196 (57%), Gaps = 18/196 (9%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS---HKKYGGRPVKLQIW 297
+ L+ GD VGKT+ V+ + + KF NYK T+G DF+ K L H K + LQ+W
Sbjct: 24 FKFLVIGDYGVGKTALVRRYTEGKFSSNYKITIGADFAIKSLDWDPHTK-----INLQLW 78
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
DIAG +R+ M+RVYY+ + ++FD++ +F+S+ +W DL K L +G+ +P +L
Sbjct: 79 DIAGHERFGYMTRVYYKYAVAAALVFDISRMATFQSMKKWLCDLREKVTLSDGSSIPIVL 138
Query: 358 LASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK----- 412
LA+KCD+ V ++ C + + +W S+K + ++ +M +LV++++ +K
Sbjct: 139 LANKCDIS-VAVTNEQVAKFCRENSIDAWYATSAKNNTNVDAAMRYLVEKVLSAKIDGGI 197
Query: 413 ----RMEEEAVERKSS 424
R+ E ++ R+ S
Sbjct: 198 RDSIRLREVSLNRERS 213
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS---HKKYGGRPVKLQIW 227
+ L+ GD VGKT+ V+ + + KF NYK T+G DF+ K L H K + LQ+W
Sbjct: 24 FKFLVIGDYGVGKTALVRRYTEGKFSSNYKITIGADFAIKSLDWDPHTK-----INLQLW 78
Query: 228 DI 229
DI
Sbjct: 79 DI 80
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K LVIGD VGKT+ V+ + + KF NYK T+G DF+ K L
Sbjct: 21 EHLFKFLVIGDYGVGKTALVRRYTEGKFSSNYKITIGADFAIKSL 65
>gi|154422404|ref|XP_001584214.1| Ras family protein [Trichomonas vaginalis G3]
gi|121918460|gb|EAY23228.1| Ras family protein [Trichomonas vaginalis G3]
Length = 214
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 105/174 (60%), Gaps = 9/174 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ IL+ G+ GKTS ++ +V F + YK T+GVDF++K + K+ + V LQ+WDI
Sbjct: 17 FKILVVGEMGTGKTSLLRKYVDGVFSEYYKTTIGVDFASKDI---KWDDKTNVSLQLWDI 73
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+ VYYQ + G +++FD+ ++ E +QWK D+DSK +PCLLL
Sbjct: 74 AGQERFGSMTHVYYQEAVGALLVFDVMRHQTLELAIQWKKDIDSKVFTSQDKPIPCLLLG 133
Query: 360 SKCDLPDR----QVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+K DL + + E E++A C ++ F+ + E S++ +E++ LV II
Sbjct: 134 NKIDLAEDGKWGKTE-EEMKAFCDEHGFIGFFETSARTGHNLEEAPRALVKYII 186
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
P + KILV+G+ GKTS ++ +V F + YK T+GVDF++K
Sbjct: 10 PESMRKIFKILVVGEMGTGKTSLLRKYVDGVFSEYYKTTIGVDFASK 56
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ IL+ G+ GKTS ++ +V F + YK T+GVDF++K + K+ + V LQ+WDI
Sbjct: 17 FKILVVGEMGTGKTSLLRKYVDGVFSEYYKTTIGVDFASKDI---KWDDKTNVSLQLWDI 73
>gi|395531198|ref|XP_003767669.1| PREDICTED: ras-related protein Rab-7L1 isoform 2 [Sarcophilus
harrisii]
Length = 180
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 97/173 (56%), Gaps = 26/173 (15%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG-------------------------- 41
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLD K L +G +PCLLLA+
Sbjct: 42 GQERFTSMTRLYYRDAAACVIMFDVTNATTFSNSQRWKQDLDCKLTLPSGEPVPCLLLAN 101
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K DL V ++I+ + F W E S KE+ I ++M L+++++ + R
Sbjct: 102 KSDLSPWAVTRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEQMMANTR 154
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG 41
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG 204
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG 41
>gi|403353512|gb|EJY76294.1| hypothetical protein OXYTRI_02199 [Oxytricha trifallax]
Length = 240
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 108/178 (60%), Gaps = 8/178 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS+VGKTS +Q F F ++K T+G DFSTK ++ + R V LQIWD AGQ
Sbjct: 17 LVIIGDSSVGKTSIIQMFQHKHFNQSFKPTIGADFSTKEITME--DNRIVNLQIWDTAGQ 74
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D CI+++D+TN +SF+ ++ W+ K + LP L+L +KC
Sbjct: 75 ERFQSLGSAFYRGADCCILVYDITNPQSFDHIMNWRQVFLIKSEPKDPQTLPFLILGNKC 134
Query: 363 DLPDRQVEINEIEA--VCHQ--YNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
D+ + + + IEA C Q N M + E S+K ++ +E++ L+ +++ KR EE
Sbjct: 135 DVEESERRVTTIEAKRFCQQNGSNNMLFYETSAKNNINVEEAFRELIKKVV--KRQEE 190
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS+VGKTS +Q F F ++K T+G DFSTK ++ + R V LQIWD
Sbjct: 17 LVIIGDSSVGKTSIIQMFQHKHFNQSFKPTIGADFSTKEITME--DNRIVNLQIWD 70
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 32/43 (74%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+K+++IGDS+VGKTS +Q F F ++K T+G DFSTK ++
Sbjct: 15 IKLVIIGDSSVGKTSIIQMFQHKHFNQSFKPTIGADFSTKEIT 57
>gi|390368195|ref|XP_003731406.1| PREDICTED: ras-related protein Rab-32B-like [Strongylocentrotus
purpuratus]
Length = 239
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 93/145 (64%), Gaps = 2/145 (1%)
Query: 265 FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFD 324
F NYK T+GVDF+ K L + V LQ+WDIAG +R+ M+RVYY+ + +I+FD
Sbjct: 46 FSPNYKLTIGVDFALKSLDWDE--NTRVNLQLWDIAGHERFGHMTRVYYKYAIAAVIVFD 103
Query: 325 LTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFM 384
L+ +F+SV++W D+ K +L N +P LLLA+KCDLPD ++ + ++ C + F+
Sbjct: 104 LSRPATFDSVLKWSTDVHEKVMLANEQPVPLLLLANKCDLPDTVLDADMLDHFCKENKFI 163
Query: 385 SWIEVSSKEHLMIEDSMNFLVDRII 409
W S+K+ + D+M++LV+ I+
Sbjct: 164 GWFGTSAKDDTNVTDAMSYLVETIL 188
>gi|307180723|gb|EFN68613.1| Ras-related protein Rab-32 [Camponotus floridanus]
Length = 219
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 103/172 (59%), Gaps = 3/172 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ L+ GD VGKT+ V+ + + KF NYK T+G DF+ K L + + LQ+WDIA
Sbjct: 25 FKFLVIGDYGVGKTALVRRYTEGKFSSNYKITIGADFAIKTLDWDPH--TKINLQLWDIA 82
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +R+ M+RVYY+ + ++FD++ +F+S+ +W DL K L NG+ +P +LLA+
Sbjct: 83 GHERFGYMTRVYYKYAVAAALVFDISRAATFQSMKKWLCDLREKITLPNGSDIPIILLAN 142
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCD+ V +I C + +W S+K + ++ +M +LV++++ +K
Sbjct: 143 KCDIS-VAVTDEQISKFCKENKINAWYATSAKNNTNVDTAMRYLVEKVLNAK 193
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 163 FSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 222
F ++ + L+ GD VGKT+ V+ + + KF NYK T+G DF+ K L + +
Sbjct: 17 FGHLKEHLFKFLVIGDYGVGKTALVRRYTEGKFSSNYKITIGADFAIKTLDWDPH--TKI 74
Query: 223 KLQIWDI 229
LQ+WDI
Sbjct: 75 NLQLWDI 81
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K LVIGD VGKT+ V+ + + KF NYK T+G DF+ K L
Sbjct: 22 EHLFKFLVIGDYGVGKTALVRRYTEGKFSSNYKITIGADFAIKTL 66
>gi|260783603|ref|XP_002586863.1| hypothetical protein BRAFLDRAFT_285607 [Branchiostoma floridae]
gi|229271991|gb|EEN42874.1| hypothetical protein BRAFLDRAFT_285607 [Branchiostoma floridae]
Length = 208
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 112/198 (56%), Gaps = 14/198 (7%)
Query: 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
P + IL+ GD VGKT ++ F FL++Y +T+G+DF K++ K G P KLQIWD
Sbjct: 10 PVFKILVLGDIDVGKTCFIHRFCGGGFLESYISTIGIDFKEKMV---KLDGEPYKLQIWD 66
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
AGQ+RY ++ YY+ + G ++M+D+T SF + +W +++ D + LL+
Sbjct: 67 TAGQERYRTLTTAYYRGATGILLMYDITGETSFIDLAKWLRNIEQNSSTD----VQLLLV 122
Query: 359 ASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
+KCD+ +R VE+ + + ++ + IE S+KE++ +E++ + +K+M E
Sbjct: 123 GNKCDMENRVVELARAQKLAESFD-LELIEASAKENINVEEAF------LALAKKMSESR 175
Query: 419 VERKSSIRLSEETLRDDQ 436
+ S + + +R D+
Sbjct: 176 SRKLSRKHSARDVIRWDK 193
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYG 161
P+D V KILV+GD VGKT ++ F FL++Y +T+G+DF K++ K G PY
Sbjct: 5 PADEPPVFKILVLGDIDVGKTCFIHRFCGGGFLESYISTIGIDFKEKMV---KLDGEPYK 61
Query: 162 T----------FSPIQTPSYL----ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 207
+ + T Y IL+ D T G+TS++ K+L N + D
Sbjct: 62 LQIWDTAGQERYRTLTTAYYRGATGILLMYDIT-GETSFID---LAKWLRNIEQNSSTDV 117
Query: 208 STKLLSHK 215
L+ +K
Sbjct: 118 QLLLVGNK 125
>gi|57097619|ref|XP_539883.1| PREDICTED: ras-related protein Rab-19 [Canis lupus familiaris]
Length = 217
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 114/217 (52%), Gaps = 22/217 (10%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L + G+ VK+Q+WD A
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSL---EIDGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT R +FESV W H+++ A L +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKY----GAANLVIMLIGN 130
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL + R V + + +Y ++ +E S+KE +++ M E +
Sbjct: 131 KCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNVDEVFTL----------MARELI 180
Query: 420 ERKSSIRLSEETLR----DDQPKKLVPADKVSTYCWC 452
R S L E TL D +P L K T+C C
Sbjct: 181 ARNSLHLLGERTLDSPAPDSRPVVLAQDPKEKTHCMC 217
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L + G+ VK+Q+WD
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSL---EIDGKKVKMQVWD 72
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGDS VGKT VQ F + + +NT+GVDF+ + L
Sbjct: 17 LFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSL 59
>gi|47028277|gb|AAT09071.1| RAS related GTP binding protein [Bigelowiella natans]
Length = 210
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 118/201 (58%), Gaps = 10/201 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ GD VGKTS +Q + + F +YK T+GV+F+ K + + + V +Q+WDIAGQ
Sbjct: 9 VLVVGDVAVGKTSIIQRYTNDSFRKDYKTTIGVEFALKPI---EVDDKCVNIQLWDIAGQ 65
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
DR+I + R +Y+N+ I+++D+T+ K+ ++ V+WK D+D K L +G ++PC+LL +K
Sbjct: 66 DRFIGLLRNFYRNASAAIVVYDITSPKTLQNAVKWKADIDKKVRLPDGGIIPCILLGNKS 125
Query: 363 DLPDRQ----VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
DL + + ++ + + F+ +E S+K + + LV ++I S + + A
Sbjct: 126 DLRETEGTTFIDPEYAMELAKKSGFIGCMETSAKTGANVGRACKGLVKKVITSMKNSQPA 185
Query: 419 VERKSSIRLSEETLRDDQPKK 439
++ ++ S TL+ KK
Sbjct: 186 ---QTVVKDSNITLKGRSQKK 203
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
D + +LK+LV+GD VGKTS +Q + + F +YK T+GV+F+ K
Sbjct: 2 DDDLLLKVLVVGDVAVGKTSIIQRYTNDSFRKDYKTTIGVEFALK 46
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+L+ GD VGKTS +Q + + F +YK T+GV+F+ K + + + V +Q+WDI
Sbjct: 9 VLVVGDVAVGKTSIIQRYTNDSFRKDYKTTIGVEFALKPI---EVDDKCVNIQLWDI 62
>gi|113679535|ref|NP_001038812.1| ras-related protein Rab-43 [Danio rerio]
gi|112419206|gb|AAI22422.1| Zgc:153788 [Danio rerio]
gi|182890198|gb|AAI65016.1| Zgc:153788 protein [Danio rerio]
Length = 208
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 106/170 (62%), Gaps = 8/170 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD VGKT VQ F F++ NT+GVDF+ K L + G+ VKLQIWD A
Sbjct: 14 FKIVLVGDVGVGKTCVVQRFKTGIFIEKQGNTIGVDFTMKTL---EIHGKRVKLQIWDTA 70
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G II +D+T + +F SV +W D+ G+ + LL+ +
Sbjct: 71 GQERFRTITQSYYRSANGAIITYDITKKATFLSVPKWMEDVKKY----GGSNIVPLLIGN 126
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL + R+V + + + + HQ +F+S IE S+K+ ++++ N + +I
Sbjct: 127 KCDLSESREVPLEDAQTMAHQLDFVSAIETSAKDSSNVDEAFNKMASELI 176
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD VGKT VQ F F++ NT+GVDF+ K L + G+ VKLQIWD
Sbjct: 14 FKIVLVGDVGVGKTCVVQRFKTGIFIEKQGNTIGVDFTMKTL---EIHGKRVKLQIWD 68
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ V KI+++GD VGKT VQ F F++ NT+GVDF+ K L
Sbjct: 11 DLVFKIVLVGDVGVGKTCVVQRFKTGIFIEKQGNTIGVDFTMKTL 55
>gi|403366976|gb|EJY83296.1| Ras-like protein Rab-11A [Oxytricha trifallax]
Length = 255
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 100/152 (65%), Gaps = 9/152 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGK++ + FV+N+F N + T+GV+FSTK + + G+ VK QIWD A
Sbjct: 14 FKIVLVGDSGVGKSNLLMRFVKNEFHQNMQTTIGVEFSTKSM---QIEGQLVKAQIWDTA 70
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+N+ G ++++D+T+R+SFE++ +W+ +L + A +L+ +
Sbjct: 71 GQERYRALTHAYYRNAVGALLIYDITDRQSFENLKKWQSELANHS----EANTVMILVGN 126
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSS 391
KCDL D R ++I E E Q N M++IE S+
Sbjct: 127 KCDLSDQRAIKIEEAEKFA-QSNNMAFIETSA 157
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 33/43 (76%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI+++GDS VGK++ + FV+N+F N + T+GV+FSTK +
Sbjct: 13 LFKIVLVGDSGVGKSNLLMRFVKNEFHQNMQTTIGVEFSTKSM 55
>gi|334322278|ref|XP_003340214.1| PREDICTED: ras-related protein Rab-7L1-like isoform 2 [Monodelphis
domestica]
Length = 180
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 97/173 (56%), Gaps = 26/173 (15%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYCQDSFSRHYKSTVG-------------------------- 41
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLD K L +G +PCLLLA+
Sbjct: 42 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNCQKWKQDLDCKLTLPSGEPVPCLLLAN 101
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K DL + ++I+ + F W E S KE+ + ++M L+++++ + R
Sbjct: 102 KSDLSPWAMTRDQIDRFSKENGFTGWTETSVKENKNVNEAMRVLIEQMMANTR 154
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYCQDSFSRHYKSTVG 41
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG 204
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVG
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYCQDSFSRHYKSTVG 41
>gi|390340858|ref|XP_003725325.1| PREDICTED: ras-related protein Rab-32-like [Strongylocentrotus
purpuratus]
Length = 190
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 109/202 (53%), Gaps = 39/202 (19%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ GD VGKTS ++ +V F +Y+ T+G
Sbjct: 12 YKVLVIGDLGVGKTSVIKRYVHQFFSQHYRATLG-------------------------- 45
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T +FE+V +WKHDLDSK L NG +P +LLA+
Sbjct: 46 GQERFGNMTRVYYKEAVGAFIVFDVTRVSTFEAVAKWKHDLDSKVQLPNGTAIPAVLLAN 105
Query: 361 KCDLPDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
KCD + N +++ C F++W E S+K+++ I+++ FLV I+ + ++A
Sbjct: 106 KCDQTKEGLVNNSSQMDEYCKDKGFINWFETSAKDNINIDEAARFLVTSILAN----DKA 161
Query: 419 VERKSSIRLSEETLRDDQPKKL 440
+ EET +D+ P KL
Sbjct: 162 IHH-------EETEQDNDPFKL 176
>gi|225719728|gb|ACO15710.1| Ras-related protein Rab-38 [Caligus clemensi]
Length = 164
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 84/125 (67%), Gaps = 2/125 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ GD GK++Y++ + + F ++Y TVGVDF K+L + G ++LQ+WDIA
Sbjct: 18 YKVLVIGDVNAGKSAYIRRYTEGNFSEDYLATVGVDFHLKVLHLLR--GLEIRLQLWDIA 75
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R Y++ S G +IM+D TN SF +V +WK +LD+ C L G +P +L+++
Sbjct: 76 GQERFSKMTRAYFKGSVGALIMYDSTNLGSFRAVQKWKKELDAICSLPEGQNIPAMLIST 135
Query: 361 KCDLP 365
K DLP
Sbjct: 136 KNDLP 140
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ GD GK++Y++ + + F ++Y TVGVDF K+L + G ++LQ+WDI
Sbjct: 18 YKVLVIGDVNAGKSAYIRRYTEGNFSEDYLATVGVDFHLKVLHLLR--GLEIRLQLWDI 74
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
S + K+LVIGD GK++Y++ + + F ++Y TVGVDF K+L
Sbjct: 12 SSESRLYKVLVIGDVNAGKSAYIRRYTEGNFSEDYLATVGVDFHLKVL 59
>gi|300120301|emb|CBK19855.2| unnamed protein product [Blastocystis hominis]
Length = 208
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 105/181 (58%), Gaps = 7/181 (3%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS+VGKT +Q FV NKF D YK+T+G DF + + P +QIWD AGQ
Sbjct: 12 LIILGDSSVGKTCIIQQFVFNKFSDKYKSTIGADFFPRDV---MIDNTPYSVQIWDTAGQ 68
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+RY + +Y+ +D CI+ FDLTN K+F+++ +W+ + + P +++ +K
Sbjct: 69 ERYQSLGSSFYRGTDACILAFDLTNAKTFKNLEKWQDEFLVTAAPADPLNFPFVIVGNKV 128
Query: 363 DLP--DRQVEINEIE--AVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
D+P +R V E+E A + M + E S+KE++ IE ++ ++ + I K EEE
Sbjct: 129 DVPESERMVTKEEVEEWARSRRVTTMHYFETSAKENINIEAAIFDVLRQAIAQKEGEEEY 188
Query: 419 V 419
V
Sbjct: 189 V 189
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
S ++I GDS+VGKT +Q FV NKF D YK+T+G DF + + P +QIWD
Sbjct: 9 SLKLIILGDSSVGKTCIIQQFVFNKFSDKYKSTIGADFFPRDV---MIDNTPYSVQIWD 64
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 30/37 (81%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
LK++++GDS+VGKT +Q FV NKF D YK+T+G DF
Sbjct: 10 LKLIILGDSSVGKTCIIQQFVFNKFSDKYKSTIGADF 46
>gi|121582364|ref|NP_001073492.1| RAB39B, member RAS oncogene family [Danio rerio]
gi|118763672|gb|AAI28659.1| RAB39B, member RAS oncogene family [Danio rerio]
gi|182889234|gb|AAI64823.1| Rab39b protein [Danio rerio]
Length = 213
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 105/178 (58%), Gaps = 7/178 (3%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+ I + + +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +
Sbjct: 1 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRI 58
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
KLQIWD AGQ+R+ ++R YY+NS G +++FD+TNR+SF++V +W + S
Sbjct: 59 KLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEEARSHV---QPHS 115
Query: 353 LPCLLLASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+ LL+ KCDL P RQV E E + Y M ++E S+++ + +E + L I
Sbjct: 116 IVFLLVGHKCDLEPQRQVSQQEAEKLAAAYG-MRYVETSARDAINVERAFTELTRDIF 172
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +KLQIWD
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRIKLQIWD 64
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+++VIGDSTVGK+ ++ F + +F TVGVDF ++L+
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLV 50
>gi|145535806|ref|XP_001453636.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421358|emb|CAK86239.1| unnamed protein product [Paramecium tetraurelia]
Length = 218
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 103/169 (60%), Gaps = 8/169 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+S VGK+ + F +N+F +++ NT+GVDF K+ K VKLQIWD A
Sbjct: 16 FKVLLIGNSGVGKSCMLMRFSENQFTNHFYNTIGVDFKIKVFQIDK---STVKLQIWDTA 72
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQDR+ ++ YY+ + G II+FD+T+R+SF + QW ++D + +L+ +
Sbjct: 73 GQDRFRTITSSYYRGAQGIIIVFDVTDRESFNQIRQWMQEIDKFA----AESVNKILVGN 128
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
K D R+V +E EA+ Y+ +S+IE S+K ++ IE+ + + +II
Sbjct: 129 KIDSSQRRVSTDEAEALAKSYS-ISYIETSAKTNINIENCFSLITRQII 176
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ G+S VGK+ + F +N+F +++ NT+GVDF K+ K VKLQIWD
Sbjct: 16 FKVLLIGNSGVGKSCMLMRFSENQFTNHFYNTIGVDFKIKVFQIDK---STVKLQIWD 70
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 36/53 (67%)
Query: 98 FEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ + S+ + + K+L+IG+S VGK+ + F +N+F +++ NT+GVDF K+
Sbjct: 5 YVQQSSECDYLFKVLLIGNSGVGKSCMLMRFSENQFTNHFYNTIGVDFKIKVF 57
>gi|145509136|ref|XP_001440512.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407729|emb|CAK73115.1| unnamed protein product [Paramecium tetraurelia]
Length = 216
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 107/181 (59%), Gaps = 11/181 (6%)
Query: 229 IYCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG 288
I C +S + +L+ G+S VGK+ + F +N+F +++ NT+GVDF K+ +
Sbjct: 4 IICLISD---YLFKVLLIGNSGVGKSCMLMRFSENQFRNHFYNTIGVDFKIKVFQIDR-- 58
Query: 289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD 348
VKLQIWD AGQDR+ ++ YY+ + G II+FD+T+R+SF + QW ++D
Sbjct: 59 -STVKLQIWDTAGQDRFRTITSSYYRGAQGIIIVFDVTDRESFNQIRQWIQEIDKFA--- 114
Query: 349 NGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ +L+ +K D R+V +E EA+ YN +S+IE S+K ++ IE+ + + +I
Sbjct: 115 -AESVNKILVGNKIDSSQRRVSTDEAEALAKSYN-ISYIETSAKTNINIENCFSLITRQI 172
Query: 409 I 409
I
Sbjct: 173 I 173
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ G+S VGK+ + F +N+F +++ NT+GVDF K+ + VKLQIWD
Sbjct: 13 FKVLLIGNSGVGKSCMLMRFSENQFRNHFYNTIGVDFKIKVFQIDR---STVKLQIWD 67
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 33/46 (71%)
Query: 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
++ + K+L+IG+S VGK+ + F +N+F +++ NT+GVDF K+
Sbjct: 9 SDYLFKVLLIGNSGVGKSCMLMRFSENQFRNHFYNTIGVDFKIKVF 54
>gi|123501229|ref|XP_001328023.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|62736248|gb|AAX97453.1| small Rab GTPase Rab7a [Trichomonas vaginalis]
gi|121910961|gb|EAY15800.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 203
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 98/167 (58%), Gaps = 3/167 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ GD++VGKTS + FV +F +YK T+G DFS+K L G V LQIWD AGQ
Sbjct: 11 LLLLGDASVGKTSLLNQFVNREFTSSYKATIGSDFSSKQLD---VDGHYVTLQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D CI+++D+T SFE++ +W+++ + L N + P LLL +K
Sbjct: 68 ERFQSLGPTFYRGTDCCILVYDVTKPASFENIKKWRNEFSLQLGLSNASDFPFLLLGNKS 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
DLPD+ V+ + M + EVS+K ++ + +V + +
Sbjct: 128 DLPDKAVQPSAAREFAQMNGDMIFEEVSAKTAEGVQTAFEAIVRKAL 174
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+L+ GD++VGKTS + FV +F +YK T+G DFS+K L G V LQIWD
Sbjct: 11 LLLLGDASVGKTSLLNQFVNREFTSSYKATIGSDFSSKQLD---VDGHYVTLQIWD 63
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
S +LK+L++GD++VGKTS + FV +F +YK T+G DFS+K L
Sbjct: 3 SRGRQMLKLLLLGDASVGKTSLLNQFVNREFTSSYKATIGSDFSSKQL 50
>gi|403376123|gb|EJY88041.1| Ras-related protein RABG3b [Oxytricha trifallax]
Length = 249
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 103/176 (58%), Gaps = 7/176 (3%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS +Q F NKF ++K T+G DFS K L+ R V LQIWD AGQ
Sbjct: 21 LVIIGDSGVGKTSLIQMFEHNKFNQSFKPTIGADFSNKELT---IDDRIVTLQIWDTAGQ 77
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+TN SFE+++ WK +K LP L+L +K
Sbjct: 78 ERFQSLGSAFYRGADCCVLVYDVTNPMSFENLLNWKSIFLTKSEPREPHTLPFLVLGNKM 137
Query: 363 DLPDRQVEINEIEA--VCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
D+ Q +I E +A C M + E S+K ++ +E + L+ ++I KR EE
Sbjct: 138 DVDAGQKKIQENDARKFCKDNGDMIFYETSAKNNINVELAFQALISKVI--KRQEE 191
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 42/73 (57%), Gaps = 9/73 (12%)
Query: 162 TFSPIQTPSYL------ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 215
T +P QT L ++I GDS VGKTS +Q F NKF ++K T+G DFS K L+
Sbjct: 4 TPTPGQTSQQLRKCFVKLVIIGDSGVGKTSLIQMFEHNKFNQSFKPTIGADFSNKELT-- 61
Query: 216 KYGGRPVKLQIWD 228
R V LQIWD
Sbjct: 62 -IDDRIVTLQIWD 73
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 32/43 (74%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+K+++IGDS VGKTS +Q F NKF ++K T+G DFS K L+
Sbjct: 19 VKLVIIGDSGVGKTSLIQMFEHNKFNQSFKPTIGADFSNKELT 61
>gi|262401089|gb|ACY66447.1| putative ras-related protein Rab [Scylla paramamosain]
Length = 197
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 112/199 (56%), Gaps = 9/199 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F NY T+GVDF + L + G VKLQIWD A
Sbjct: 5 FKLLIIGDSGVGKSSLLLRFADNTFTGNYITTIGVDFKIRTL---EVDGERVKLQIWDTA 61
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+TN +SF +V +W H+++ C + N +L+ +
Sbjct: 62 GQERFRTITSTYYRGTHGVIVVYDVTNGESFANVKRWLHEIEQNCEVVNR-----ILVGN 116
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE-AV 419
K D PDR+V + E +S E S+K+++ +E+ + ++ +K+ +++ +
Sbjct: 117 KNDCPDRKVVLYEDAKRFADQMTISLFETSAKDNINVEEMFTVMTKMVLQTKKEQKDRQM 176
Query: 420 ERKSSIRLSEETLRDDQPK 438
E +RL +PK
Sbjct: 177 ETNDPLRLHNNKTHKRKPK 195
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F NY T+GVDF + L + G VKLQIWD
Sbjct: 5 FKLLIIGDSGVGKSSLLLRFADNTFTGNYITTIGVDFKIRTL---EVDGERVKLQIWD 59
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ K+L+IGDS VGK+S + F N F NY T+GVDF + L
Sbjct: 4 LFKLLIIGDSGVGKSSLLLRFADNTFTGNYITTIGVDFKIRTLE 47
>gi|67470492|ref|XP_651210.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56467916|gb|EAL45824.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56790096|dbj|BAD82844.1| small GTPase EhRabL2 [Entamoeba histolytica]
gi|56790098|dbj|BAD82845.1| small GTPase EhRabL1 [Entamoeba histolytica]
gi|449705209|gb|EMD45305.1| small GTPase EhRabL2, putative [Entamoeba histolytica KU27]
Length = 206
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 101/171 (59%), Gaps = 8/171 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ GD + GKTS + F F +NY+ T+GV+FS+K +S G+ V+L++WDIAGQ
Sbjct: 5 IIVVGDPSSGKTSSIHQFCDGIFDNNYQPTIGVEFSSKFIS---IDGKSVELRLWDIAGQ 61
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
D Y MSRVYY + G I+M D+TN+ S E ++WK ++D + + +N +P LL+ +K
Sbjct: 62 DHYAGMSRVYYNGALGAIVMCDVTNKNSIEGAMKWKANIDDRVLFNN-EKIPVLLVGNKT 120
Query: 363 DLPDRQVEINEIE----AVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
DL + ++ I+ + F +I S++ +E+SM + II
Sbjct: 121 DLIQDEAQLKAIQYQLGEISASNGFSGYILTSARTSHNLEESMVRIAKFII 171
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
I++ GD + GKTS + F F +NY+ T+GV+FS+K +S G+ V+L++WDI
Sbjct: 5 IIVVGDPSSGKTSSIHQFCDGIFDNNYQPTIGVEFSSKFIS---IDGKSVELRLWDI 58
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
LKI+V+GD + GKTS + F F +NY+ T+GV+FS+K +S
Sbjct: 3 LKIIVVGDPSSGKTSSIHQFCDGIFDNNYQPTIGVEFSSKFIS 45
>gi|344297148|ref|XP_003420261.1| PREDICTED: ras-related protein Rab-19-like [Loxodonta africana]
Length = 217
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 112/217 (51%), Gaps = 22/217 (10%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT VQ F+ + + +NT+GVDF+ + L + G+ VK+Q+WD A
Sbjct: 18 FKIILIGDSNVGKTCVVQHFMSGVYTETQQNTIGVDFTVRSL---EINGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT R +FESV W H+++ A L +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEVEKY----GAANLVVMLIGN 130
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K DL D R V + + +Y ++ +E S+KE IE+ M +E +
Sbjct: 131 KADLWDQRHVLFEDACTLAEKYGLLAVLETSAKESRNIEEVFVL----------MAKELI 180
Query: 420 ERKSSIRLSEETLR----DDQPKKLVPADKVSTYCWC 452
R S E TL D P + T+C C
Sbjct: 181 ARNSPHLCGEPTLSSLPLDSSPVLVAQGPSRETHCTC 217
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT VQ F+ + + +NT+GVDF+ + L + G+ VK+Q+WD
Sbjct: 18 FKIILIGDSNVGKTCVVQHFMSGVYTETQQNTIGVDFTVRSL---EINGKKVKMQVWD 72
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGDS VGKT VQ F+ + + +NT+GVDF+ + L
Sbjct: 17 LFKIILIGDSNVGKTCVVQHFMSGVYTETQQNTIGVDFTVRSL 59
>gi|348559734|ref|XP_003465670.1| PREDICTED: ras-related protein Rab-32-like [Cavia porcellus]
Length = 221
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 118/196 (60%), Gaps = 14/196 (7%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K L+ + R V+LQ+WDI
Sbjct: 25 FKVLVVGELGVGKTSIIKRYVHKLFSQHYRATIGVDFALKALN---WDSRTLVRLQLWDI 81
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AG+ + ++ +YY +S + D T SF+S +WK+DLDSK L NG+ +P +LLA
Sbjct: 82 AGKRSFNVLTWIYYADSLASTVSKDST---SFDSSDKWKNDLDSKVHLHNGSPIPAVLLA 138
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM---E 415
+ CD D ++++ C + F W E S+K+++ I+++ FLV+ I+ + + E
Sbjct: 139 NICDQNKDSGHNPSQMDQFCKDHGFSGWFETSAKDNINIDEAARFLVEHILANCKHFPSE 198
Query: 416 EEAVERKSSIRLSEET 431
+ V++ I+L +ET
Sbjct: 199 DNDVDK---IKLDQET 211
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K L+ + R V+LQ+WDI
Sbjct: 25 FKVLVVGELGVGKTSIIKRYVHKLFSQHYRATIGVDFALKALN---WDSRTLVRLQLWDI 81
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P E + K+LV+G+ VGKTS ++ +V F +Y+ T+GVDF+ K L+
Sbjct: 18 PDTREHLFKVLVVGELGVGKTSIIKRYVHKLFSQHYRATIGVDFALKALN 67
>gi|407037459|gb|EKE38653.1| Rab family GTPase [Entamoeba nuttalli P19]
Length = 206
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 101/171 (59%), Gaps = 8/171 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ GD + GKTS + F F +NY+ T+GV+FS+K +S G+ V+L++WDIAGQ
Sbjct: 5 IIVVGDPSSGKTSSIHQFCDGIFDNNYQPTIGVEFSSKFIS---IDGKSVELRLWDIAGQ 61
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
D Y MSRVYY + G I+M D+TN+ S E ++WK ++D + + +N +P LL+ +K
Sbjct: 62 DHYAGMSRVYYNGALGAIVMCDVTNKNSIEGAMKWKANIDDRVLFNN-ENIPVLLVGNKT 120
Query: 363 DLPDRQVEINEIE----AVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
DL + ++ I+ + F +I S++ +E+SM + II
Sbjct: 121 DLIQDEAQLKAIQYQLGEISASNGFSGYILTSARTSHNLEESMIRIAKFII 171
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
I++ GD + GKTS + F F +NY+ T+GV+FS+K +S G+ V+L++WDI
Sbjct: 5 IIVVGDPSSGKTSSIHQFCDGIFDNNYQPTIGVEFSSKFIS---IDGKSVELRLWDI 58
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
LKI+V+GD + GKTS + F F +NY+ T+GV+FS+K +S
Sbjct: 3 LKIIVVGDPSSGKTSSIHQFCDGIFDNNYQPTIGVEFSSKFIS 45
>gi|167382467|ref|XP_001736117.1| rab17 [Entamoeba dispar SAW760]
gi|165901556|gb|EDR27634.1| rab17, putative [Entamoeba dispar SAW760]
Length = 214
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 105/188 (55%), Gaps = 10/188 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ GD + GKTS + F F DNY+ T+GV+FS+K ++ V+L++WDIAGQ
Sbjct: 13 IIVVGDPSSGKTSSIHQFCDGIFEDNYQPTIGVEFSSKFIT---VNTNEVELRLWDIAGQ 69
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
D Y MSRVYY + G ++M D+TN S E V +WK ++D + + +N +P LL+ +K
Sbjct: 70 DHYAGMSRVYYNGALGGLVMCDVTNNTSIEGVKKWKANIDDRVLFNN-EKIPVLLIGNKA 128
Query: 363 DL----PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC--SKRMEE 416
DL ++ +++ + + F + VS+K +E++M + II +E
Sbjct: 129 DLLKSDEEKDAAAAKLKEIANSNGFKGMLLVSAKTGFHVEETMENIAKLIIAQFGNVLEA 188
Query: 417 EAVERKSS 424
E E SS
Sbjct: 189 EGNEDASS 196
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
I++ GD + GKTS + F F DNY+ T+GV+FS+K ++ V+L++WDI
Sbjct: 13 IIVVGDPSSGKTSSIHQFCDGIFEDNYQPTIGVEFSSKFIT---VNTNEVELRLWDI 66
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
LKI+V+GD + GKTS + F F DNY+ T+GV+FS+K ++
Sbjct: 11 LKIIVVGDPSSGKTSSIHQFCDGIFEDNYQPTIGVEFSSKFIT 53
>gi|427787063|gb|JAA58983.1| Putative rab subfamily protein of small gtpase [Rhipicephalus
pulchellus]
Length = 208
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 103/170 (60%), Gaps = 9/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD VGKT V F +++ + NT+GVDF+ K L+ + G+ VKLQIWD A
Sbjct: 11 FKIVLIGDCGVGKTCVVHRFKSGMYVERHGNTIGVDFAMKTLTVE---GKKVKLQIWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G II++D+T R SF S+ +W ++ G+ +P LL+ +
Sbjct: 68 GQERFRTITQSYYRSANGVIIVYDITKRSSFLSLPRWVEEVRRY----TGSNVPLLLVGN 123
Query: 361 KCDLPD-RQVEINEIEAVCHQY-NFMSWIEVSSKEHLMIEDSMNFLVDRI 408
KCD R+V E +A+ QY FM+ IE S+KE+ IE L +
Sbjct: 124 KCDCESLREVTQEEAQALADQYPEFMATIETSAKENTNIESVFVMLATEL 173
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD VGKT V F +++ + NT+GVDF+ K L+ + G+ VKLQIWD
Sbjct: 11 FKIVLIGDCGVGKTCVVHRFKSGMYVERHGNTIGVDFAMKTLTVE---GKKVKLQIWD 65
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ KI++IGD VGKT V F +++ + NT+GVDF+ K L+
Sbjct: 10 LFKIVLIGDCGVGKTCVVHRFKSGMYVERHGNTIGVDFAMKTLT 53
>gi|183230959|ref|XP_648952.2| small GTPase Rab 32 [Entamoeba histolytica HM-1:IMSS]
gi|169802698|gb|EAL43562.2| small GTPase Rab 32, putative [Entamoeba histolytica HM-1:IMSS]
gi|449705109|gb|EMD45228.1| rab17, putative [Entamoeba histolytica KU27]
Length = 256
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 105/188 (55%), Gaps = 10/188 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ GD + GKTS + F F DNY+ T+GV+FS+K ++ V+L++WDIAGQ
Sbjct: 55 IIVVGDPSSGKTSSIHQFCDGIFEDNYQPTIGVEFSSKFIT---VNTNEVELRLWDIAGQ 111
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
D Y MSRVYY + G ++M D+TN S E V +WK ++D + + +N +P LL+ +K
Sbjct: 112 DHYAGMSRVYYNGALGGLVMCDVTNNTSIEGVKKWKANIDDRVLFNN-EKIPVLLIGNKA 170
Query: 363 DL----PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC--SKRMEE 416
DL ++ +++ + + F + VS+K +E++M + II +E
Sbjct: 171 DLLKTDEEKDAAAAKLKEIANSNGFKGMLLVSAKTGFHVEETMENIAKLIIAQFGNVLEA 230
Query: 417 EAVERKSS 424
E E SS
Sbjct: 231 EGNEDASS 238
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
I++ GD + GKTS + F F DNY+ T+GV+FS+K ++ V+L++WDI
Sbjct: 55 IIVVGDPSSGKTSSIHQFCDGIFEDNYQPTIGVEFSSKFIT---VNTNEVELRLWDI 108
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
LKI+V+GD + GKTS + F F DNY+ T+GV+FS+K ++
Sbjct: 53 LKIIVVGDPSSGKTSSIHQFCDGIFEDNYQPTIGVEFSSKFIT 95
>gi|427787091|gb|JAA58997.1| Putative rab35 member ras oncoprotein family [Rhipicephalus
pulchellus]
Length = 200
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 103/177 (58%), Gaps = 8/177 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F NY T+GVDF + L + G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFTGNYITTIGVDFKIRTL---EVDGERVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN +SF +V +W H+++ C + N +L+ +
Sbjct: 66 GQERFRTITSTYYRGTHGVVVVYDVTNGESFANVKRWLHEIEQNCDVVNR-----ILVGN 120
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
K D P R+V + E + E S+KE++ +E+ N + ++ SK+ ++E
Sbjct: 121 KNDDPSRKVVLTEDAQRFADQMGIQLFETSAKENINVEEMFNAITRMVLKSKKEQKE 177
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F NY T+GVDF + L + G VKLQIWD
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFTGNYITTIGVDFKIRTL---EVDGERVKLQIWD 63
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ K+L+IGDS VGK+S + F N F NY T+GVDF + L
Sbjct: 8 LFKLLIIGDSGVGKSSLLLRFADNTFTGNYITTIGVDFKIRTLE 51
>gi|240974176|ref|XP_002401800.1| zinc finger protein, putative [Ixodes scapularis]
gi|215491064|gb|EEC00705.1| zinc finger protein, putative [Ixodes scapularis]
gi|442756045|gb|JAA70182.1| Putative gtpase rab1/ypt1 small g protein superfamily [Ixodes
ricinus]
Length = 199
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 103/177 (58%), Gaps = 8/177 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F NY T+GVDF + L + G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFTGNYITTIGVDFKIRTL---EVDGERVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN +SF +V +W H+++ C + N +L+ +
Sbjct: 66 GQERFRTITSTYYRGTHGVVVVYDVTNGESFANVKRWLHEIEQNCDVVNR-----ILVGN 120
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
K D P R+V + E + E S+KE++ +E+ N + ++ SK+ ++E
Sbjct: 121 KNDDPSRKVVLTEDAQRFADQMGIQLFETSAKENINVEEMFNAITRMVLKSKKEQKE 177
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F NY T+GVDF + L + G VKLQIWD
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFTGNYITTIGVDFKIRTL---EVDGERVKLQIWD 63
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ K+L+IGDS VGK+S + F N F NY T+GVDF + L
Sbjct: 8 LFKLLIIGDSGVGKSSLLLRFADNTFTGNYITTIGVDFKIRTLE 51
>gi|348673878|gb|EGZ13697.1| hypothetical protein PHYSODRAFT_513477 [Phytophthora sojae]
Length = 227
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 110/187 (58%), Gaps = 7/187 (3%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+LI G++ GKTS ++ F Q++F + Y +T+G DF K++ + ++ + LQ+WDIAGQ
Sbjct: 3 VLIVGNARCGKTSTIRRFTQDEFNEEYVSTIGADFVEKIIEYDEH--LTISLQLWDIAGQ 60
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCI-LDNGAMLPCLLLASK 361
DR+ +R Y++ + G +I+ D+T + ++VV WK+++D+ C L+ GA +P +++A+K
Sbjct: 61 DRFAKFTRGYFREAKGAVIVCDITRANTIDAVVNWKNEIDTCCKDLNEGAEIPVVMVANK 120
Query: 362 CDL---PDRQVEINEIEAVCHQYN-FMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
DL P +++ C N + W S+K I D+ L+DR++ R E+E
Sbjct: 121 SDLLMDPMGALDLGVNMQKCVDKNKIVEWFRASAKSGEHIGDAFQCLIDRMVVDLRAEKE 180
Query: 418 AVERKSS 424
+ K
Sbjct: 181 VEKEKQQ 187
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+LI G++ GKTS ++ F Q++F + Y +T+G DF K++ + ++ + LQ+WDI
Sbjct: 3 VLIVGNARCGKTSTIRRFTQDEFNEEYVSTIGADFVEKIIEYDEH--LTISLQLWDI 57
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 34/47 (72%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
+K+L++G++ GKTS ++ F Q++F + Y +T+G DF K++ + ++
Sbjct: 1 MKVLIVGNARCGKTSTIRRFTQDEFNEEYVSTIGADFVEKIIEYDEH 47
>gi|443697719|gb|ELT98053.1| hypothetical protein CAPTEDRAFT_110893 [Capitella teleta]
Length = 186
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 93/157 (59%), Gaps = 2/157 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+ VGKTS ++ + + F+ +YK T+GVDFS K + V +Q+WDIA
Sbjct: 21 FKVLVIGEFGVGKTSIIRRYTEGYFVPSYKMTIGVDFSMKSIPWNPM--THVNIQLWDIA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +R+ M+RVYY+ + I++FDL+ + E+V +W + SK +L +PC L A+
Sbjct: 79 GHERFGHMTRVYYKYAMAAIVVFDLSRSSTLEAVSKWIEGVRSKVMLTEDDPIPCFLFAN 138
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397
KCD+ +++ E+ C Q N +W S+K+ + I
Sbjct: 139 KCDIDSIEIDTVEMNNFCQQNNIETWFPTSAKDDINI 175
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
E + K+LVIG+ VGKTS ++ + + F+ +YK T+GVDFS K
Sbjct: 18 EYLFKVLVIGEFGVGKTSIIRRYTEGYFVPSYKMTIGVDFSMK 60
Score = 44.7 bits (104), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ G+ VGKTS ++ + + F+ +YK T+GVDFS K + V +Q+WDI
Sbjct: 21 FKVLVIGEFGVGKTSIIRRYTEGYFVPSYKMTIGVDFSMKSIPWNPM--THVNIQLWDI 77
>gi|324519987|gb|ADY47533.1| Ras-related protein Rab-35 [Ascaris suum]
Length = 205
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 111/198 (56%), Gaps = 8/198 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F NY T+GVDF + ++ G+ VKLQIWD A
Sbjct: 14 FKLLIIGDSGVGKSSLLLRFADNTFSPNYITTIGVDFKIRTIT---INGQRVKLQIWDTA 70
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++++T+ SF +V +W H++D+ C DN + +L+ +
Sbjct: 71 GQERFRTITSTYYRGTHGVIVVYEVTSGDSFSNVKRWLHEIDANC--DN---VQKILVGN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
K D P+R+V + + + E S+KE++ +E+ N + ++ +K +A
Sbjct: 126 KADDPERRVVLEADARRFADTMHIPFFETSAKENVNVEEMFNCITGLVLDAKLRSPQAAA 185
Query: 421 RKSSIRLSEETLRDDQPK 438
+RL R ++ K
Sbjct: 186 GDKGVRLGGSPRRQEKKK 203
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F NY T+GVDF + ++ G+ VKLQIWD
Sbjct: 14 FKLLIIGDSGVGKSSLLLRFADNTFSPNYITTIGVDFKIRTIT---INGQRVKLQIWD 68
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P D + + K+L+IGDS VGK+S + F N F NY T+GVDF + ++
Sbjct: 7 PRDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSPNYITTIGVDFKIRTIT 56
>gi|440294326|gb|ELP87343.1| rab17, putative [Entamoeba invadens IP1]
Length = 209
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 96/162 (59%), Gaps = 7/162 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ G+ +VGKTS ++ + F Y+ T+GVDF+ K +K + V+L++WDIAGQ
Sbjct: 12 IIVIGEPSVGKTSTIKKYCHGVFDQLYRATIGVDFAVKF---EKVDDKEVELRLWDIAGQ 68
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
++YI M+RVYY + G IIM+D+T +F + +WK DL+SK N +P LL+ +K
Sbjct: 69 EKYIAMTRVYYNGAHGAIIMYDVTAPNTFGATDKWKEDLESKVKF-NDQPIPALLVGNKA 127
Query: 363 DL---PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL + + E+ A + + I S+K L +ED+M
Sbjct: 128 DLLSEEEMKTAEKEMRAKVEEQKYADGILTSAKSGLAVEDAM 169
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
I++ G+ +VGKTS ++ + F Y+ T+GVDF+ K +K + V+L++WDI
Sbjct: 12 IIVIGEPSVGKTSTIKKYCHGVFDQLYRATIGVDFAVKF---EKVDDKEVELRLWDI 65
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
LKI+VIG+ +VGKTS ++ + F Y+ T+GVDF+ K
Sbjct: 10 LKIIVIGEPSVGKTSTIKKYCHGVFDQLYRATIGVDFAVKF 50
>gi|327265909|ref|XP_003217750.1| PREDICTED: ras-related protein Rab-43-like [Anolis carolinensis]
Length = 221
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 102/162 (62%), Gaps = 8/162 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F + NT+GVDF+ K L + G+ VKLQIWD A
Sbjct: 28 FKLVLIGDASVGKTCLVQRFKTGAFAERQGNTIGVDFTMKSLEIQ---GKRVKLQIWDTA 84
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D++ R SF+S+ +W D+ G+ + LL+ +
Sbjct: 85 GQERFRTITQSYYRSANGAILAYDISKRSSFQSIPRWIEDVRKYA----GSNIVQLLIGN 140
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL D R+V++ E +++ +Y+ IE S+K+ +E++
Sbjct: 141 KSDLSDLREVQLEEAQSLAERYDITCAIETSAKDSSNVEEAF 182
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD++VGKT VQ F F + NT+GVDF+ K L + G+ VKLQIWD
Sbjct: 28 FKLVLIGDASVGKTCLVQRFKTGAFAERQGNTIGVDFTMKSLEIQ---GKRVKLQIWD 82
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 88 SPSPRASVIGFEPRPSDA-ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146
S S AS P P + + + K+++IGD++VGKT VQ F F + NT+GVDF+
Sbjct: 6 SASSAASPFLAGPDPEERYDFLFKLVLIGDASVGKTCLVQRFKTGAFAERQGNTIGVDFT 65
Query: 147 TKLL 150
K L
Sbjct: 66 MKSL 69
>gi|254574478|ref|XP_002494348.1| GTP-binding protein [Komagataella pastoris GS115]
gi|238034147|emb|CAY72169.1| GTP-binding protein [Komagataella pastoris GS115]
gi|328353835|emb|CCA40232.1| Ras-related protein Rab-7A [Komagataella pastoris CBS 7435]
Length = 205
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 99/164 (60%), Gaps = 5/164 (3%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS +Q FV KF YK T+G DF TK L + V +Q+WD AGQ
Sbjct: 11 VIILGDSGVGKTSLMQQFVNRKFSQQYKATIGADFLTKELV---IDNKNVTIQLWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+TN KS+++VV WK + + + N P +L+ +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTNNKSYDNVVSWKDEFLVQANIKNPETFPFILIGNKI 127
Query: 363 DLPDRQVEINEIEA--VCHQYNFMSWIEVSSKEHLMIEDSMNFL 404
D+ + + +IN +A +C Q + + E S+KE + I+ + + +
Sbjct: 128 DVEENKRQINNKKAQQLCAQLGNIPYFETSAKEAVNIDQAFDVV 171
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
S +T+LK++++GDS VGKTS +Q FV KF YK T+G DF TK L
Sbjct: 2 SSKKKTILKVIILGDSGVGKTSLMQQFVNRKFSQQYKATIGADFLTKEL 50
>gi|167387445|ref|XP_001738165.1| rab17 [Entamoeba dispar SAW760]
gi|165898742|gb|EDR25526.1| rab17, putative [Entamoeba dispar SAW760]
Length = 212
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 102/171 (59%), Gaps = 8/171 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ GD + GKTS + F F +NY+ T+GV+FS+K +S G+ V+L++WDIAGQ
Sbjct: 11 IIVVGDPSSGKTSSIHQFCDGIFDNNYQPTIGVEFSSKFIS---IDGKSVELRLWDIAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
D Y MSRVYY + G I+M D+TN+ S E ++WK ++D + + +N + LL+ +K
Sbjct: 68 DHYAGMSRVYYNGALGAIVMCDVTNKNSIEGAMKWKANIDDRVLFNN-EKISVLLVGNKT 126
Query: 363 DLPDRQVEI----NEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
DL + ++ N++ + F+ +I S++ +E+SM + II
Sbjct: 127 DLIQDEAQLKAIQNQLREISASNGFIGYILTSARTCHNLEESMIRIAKFII 177
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
I++ GD + GKTS + F F +NY+ T+GV+FS+K +S G+ V+L++WDI
Sbjct: 11 IIVVGDPSSGKTSSIHQFCDGIFDNNYQPTIGVEFSSKFIS---IDGKSVELRLWDI 64
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
LKI+V+GD + GKTS + F F +NY+ T+GV+FS+K +S
Sbjct: 9 LKIIVVGDPSSGKTSSIHQFCDGIFDNNYQPTIGVEFSSKFIS 51
>gi|126340875|ref|XP_001375267.1| PREDICTED: ras-related protein Rab-19-like [Monodelphis domestica]
Length = 217
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 112/213 (52%), Gaps = 14/213 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT VQ F + D +NT+GVDF + L + G+ VK+Q+WD A
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGIYTDTQQNTIGVDFMVRSL---EVDGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++ II +DLT R +FESV W H+++ A L +L+ +
Sbjct: 75 GQERFRTITQSYYRSANAAIIAYDLTRRSTFESVPHWIHEIEKY----GAANLVIMLIGN 130
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K DL D R V + + +Y ++ +E S+KE I++ + +I +
Sbjct: 131 KADLWDKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFMLMARELIARNDLSFYGE 190
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
++++ L D P L P+ +C C
Sbjct: 191 SPQNNL------LLDSSPILLAPSPNSKNHCNC 217
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 164 SPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 221
+P +T YL I++ GDS VGKT VQ F + D +NT+GVDF + L + G+
Sbjct: 9 APDETFDYLFKIILIGDSNVGKTCVVQHFKSGIYTDTQQNTIGVDFMVRSL---EVDGKK 65
Query: 222 VKLQIWD 228
VK+Q+WD
Sbjct: 66 VKMQVWD 72
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGDS VGKT VQ F + D +NT+GVDF + L
Sbjct: 17 LFKIILIGDSNVGKTCVVQHFKSGIYTDTQQNTIGVDFMVRSL 59
>gi|410906827|ref|XP_003966893.1| PREDICTED: ras-related protein Rab-39B-like [Takifugu rubripes]
Length = 213
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 104/182 (57%), Gaps = 7/182 (3%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+ I + + +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +
Sbjct: 1 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRI 58
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
KLQIWD AGQ+R+ ++R YY+NS G +++FD+TNR+SF++V W + S
Sbjct: 59 KLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHDWLEEARSHV---QPHS 115
Query: 353 LPCLLLASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
+ LL+ KCDL RQV E E + Y M ++E S+++ + +E + L I
Sbjct: 116 IVFLLVGHKCDLEAQRQVTRQEAEKLAGAYG-MRYVETSARDAINVEHAFTELTRDIFAQ 174
Query: 412 KR 413
R
Sbjct: 175 VR 176
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +KLQIWD
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRIKLQIWD 64
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+++VIGDSTVGK+ ++ F + +F TVGVDF ++L+
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLV 50
>gi|326933759|ref|XP_003212967.1| PREDICTED: ras-related protein Rab-7b-like [Meleagris gallopavo]
Length = 207
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 112/197 (56%), Gaps = 10/197 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I+I G VGKTS + +V N F ++Y+ T+G TK+++ K P+KLQIWD GQ
Sbjct: 18 IIIIGALGVGKTSLLHQYVHNTFYEDYRTTLGASILTKVVAVDK---TPLKLQIWDTGGQ 74
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ M +Y+ SDGC++ FD+T+R+SFES+ W+ D K ++ P ++L +K
Sbjct: 75 ERFRSMVSTFYKGSDGCMLAFDVTDRESFESLDNWRDDFLEK-VIPRDYDFPMVVLGNKI 133
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL DRQV A C + + + + EVS+K ++ + + L + + + + E+
Sbjct: 134 DLCDRQVSKEIASAWCKEKD-IPYFEVSAKNNINVAQAFETLAKQALTTYKGIYESY-LT 191
Query: 423 SSIRLSEETLRDDQPKK 439
SI+L+ E D+P K
Sbjct: 192 DSIKLTPE----DKPTK 204
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
I+I G VGKTS + +V N F ++Y+ T+G TK+++ K P+KLQIWD
Sbjct: 18 IIIIGALGVGKTSLLHQYVHNTFYEDYRTTLGASILTKVVAVDK---TPLKLQIWD 70
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 154
LKI++IG VGKTS + +V N F ++Y+ T+G TK+++ K
Sbjct: 16 LKIIIIGALGVGKTSLLHQYVHNTFYEDYRTTLGASILTKVVAVDK 61
>gi|126344002|ref|XP_001363573.1| PREDICTED: ras-related protein Rab-39B-like [Monodelphis domestica]
Length = 213
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 106/177 (59%), Gaps = 7/177 (3%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+ I + + +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +
Sbjct: 1 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFPQVSDPTVGVDFFSRLVEIEP--GKRI 58
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
KLQIWD AGQ+R+ ++R YY+NS G +++FD+TNR+SF++V +W L+ +
Sbjct: 59 KLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEW---LEETKVHVQPYQ 115
Query: 353 LPCLLLASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ +L+ KCDL RQV +E E V Y M +IE S+++ + +E + L I
Sbjct: 116 IVFVLVGHKCDLDTQRQVTRHEAEKVAAGYG-MKYIETSARDAINVEKAFTDLTREI 171
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +KLQIWD
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFPQVSDPTVGVDFFSRLVEIEP--GKRIKLQIWD 64
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+++VIGDSTVGK+ ++ F + +F TVGVDF ++L+
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFPQVSDPTVGVDFFSRLV 50
>gi|225709988|gb|ACO10840.1| Ras-related protein Rab-32 [Caligus rogercresseyi]
Length = 321
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 102/176 (57%), Gaps = 13/176 (7%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +++ GD GK+++++ + F +NY TVGVDF K++ + ++LQ+WDIA
Sbjct: 18 YKVIVIGDVNTGKSAFIRRYTDGSFAENYLATVGVDFHLKVIQLEH--NVEIRLQLWDIA 75
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R Y+ S G I++D T+ SF +VV+WK +LD KC L G +P +L+A+
Sbjct: 76 GQERFSRMTRAYFTGSVGAFIIYDSTDLSSFRAVVKWKKELDLKCSLPEGQNIPAILIAN 135
Query: 361 KCD------LPDRQVEINEIEAVCHQYNFMS-WIEVSSKEHLMIEDSMNFLVDRII 409
K D LP+ + E+ + F+ W S+K IE+S++ ++ I+
Sbjct: 136 KNDLEPCAGLPNEE----EMSQFLKENGFIPIWFRTSAKTGENIEESIDLMLKLIL 187
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +++ GD GK+++++ + F +NY TVGVDF K++ + ++LQ+WDI
Sbjct: 18 YKVIVIGDVNTGKSAFIRRYTDGSFAENYLATVGVDFHLKVIQLEH--NVEIRLQLWDI 74
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 104 DAETVL-KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
D E+ L K++VIGD GK+++++ + F +NY TVGVDF K++
Sbjct: 12 DTESRLYKVIVIGDVNTGKSAFIRRYTDGSFAENYLATVGVDFHLKVI 59
>gi|22651417|gb|AAL12244.1| Rab39 [Homo sapiens]
Length = 213
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 105/173 (60%), Gaps = 7/173 (4%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+ I + + +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +
Sbjct: 1 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKTI 58
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
KLQIWD AGQ+R+ ++R YY+NS G +++FD+TNR+SF++V +W L+ +
Sbjct: 59 KLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEW---LEETKVHVQPYQ 115
Query: 353 LPCLLLASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFL 404
+ +L+ KCDL RQV +E E + Y M +IE S+++ + +E + L
Sbjct: 116 IVFVLVGHKCDLDTQRQVTRHEAEKLAAAYG-MKYIETSARDAINVEKAFTDL 167
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +KLQIWD
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKTIKLQIWD 64
Score = 42.0 bits (97), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+++VIGDSTVGK+ ++ F + +F TVGVDF ++L+
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLV 50
>gi|241124292|ref|XP_002404123.1| RAB-19, 41 and, putative [Ixodes scapularis]
gi|215493584|gb|EEC03225.1| RAB-19, 41 and, putative [Ixodes scapularis]
Length = 208
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 101/163 (61%), Gaps = 9/163 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD VGKT V F +++ + NT+GVDF+ K L+ + G+ VKLQIWD A
Sbjct: 11 FKIVLIGDCGVGKTCVVHRFKSGMYVERHGNTIGVDFAMKTLTVE---GKKVKLQIWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G II++D+T R SF S+ +W ++ G+ +P LL+ +
Sbjct: 68 GQERFRTITQSYYRSANGVIIVYDITKRSSFLSLPRWVEEVRRY----TGSNVPLLLIGN 123
Query: 361 KCDLPD-RQVEINEIEAVCHQY-NFMSWIEVSSKEHLMIEDSM 401
KCD R+V E + + QY FM+ +E S+KE+ IE +
Sbjct: 124 KCDSESLREVTPEEAQGLAEQYPEFMAVLETSAKENTNIEAAF 166
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD VGKT V F +++ + NT+GVDF+ K L+ + G+ VKLQIWD
Sbjct: 11 FKIVLIGDCGVGKTCVVHRFKSGMYVERHGNTIGVDFAMKTLTVE---GKKVKLQIWD 65
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ KI++IGD VGKT V F +++ + NT+GVDF+ K L+
Sbjct: 10 LFKIVLIGDCGVGKTCVVHRFKSGMYVERHGNTIGVDFAMKTLT 53
>gi|338724303|ref|XP_001498622.3| PREDICTED: ras-related protein Rab-19-like [Equus caballus]
Length = 217
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 110/198 (55%), Gaps = 19/198 (9%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L + G+ VK+Q+WD A
Sbjct: 18 FKIILIGDSNVGKTCVVQHFRSGVYTETQQNTIGVDFTVRSL---EIDGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT R +FESV W H+++ A L +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKY----GAANLIIMLIGN 130
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL +R V + + +Y ++ +E S+KE I++ + +I
Sbjct: 131 KCDLWENRHVLFEDACTLAEKYGLLAVLETSAKESRNIDEVFVLMARELIA--------- 181
Query: 420 ERKSSIRLSEETLRDDQP 437
++S++L ET ++ P
Sbjct: 182 --RNSLQLYGETALNNLP 197
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L + G+ VK+Q+WD
Sbjct: 18 FKIILIGDSNVGKTCVVQHFRSGVYTETQQNTIGVDFTVRSL---EIDGKKVKMQVWD 72
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGDS VGKT VQ F + + +NT+GVDF+ + L
Sbjct: 17 LFKIILIGDSNVGKTCVVQHFRSGVYTETQQNTIGVDFTVRSL 59
>gi|123479672|ref|XP_001322993.1| Ras family protein [Trichomonas vaginalis G3]
gi|62736318|gb|AAX97488.1| small Rab GTPase RabX11 [Trichomonas vaginalis]
gi|121905849|gb|EAY10770.1| Ras family protein [Trichomonas vaginalis G3]
Length = 210
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 106/191 (55%), Gaps = 6/191 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y I++ GD GKTS ++ FV+ F + YK T+GVDF+ K+++ G +Q+WDIA
Sbjct: 14 YKIIVVGDMGTGKTSMIRRFVEGNFSEFYKITIGVDFANKIITAD---GVKCDIQLWDIA 70
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+ VYY+ S G I++FD+T +FE W D+ +K G +P LL+ +
Sbjct: 71 GQERFGSMTGVYYRESVGAIVVFDITRPSTFEMTKIWMDDIQAKVQTSAGEAVPTLLIGN 130
Query: 361 KCDLPDRQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
K DL + E++ + +++ + E S+K+ +E+++ L I+ +E E+
Sbjct: 131 KIDLKPENWGNKTEEMQKYAEENHYLQYFETSAKDGTNLEEAIQALASYIV-KNNIEPES 189
Query: 419 VERKSSIRLSE 429
+ +SE
Sbjct: 190 TRDLKGVDISE 200
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + DA+ V KI+V+GD GKTS ++ FV+ F + YK T+GVDF+ K+++
Sbjct: 4 EVQDDDAQKVYKIIVVGDMGTGKTSMIRRFVEGNFSEFYKITIGVDFANKIIT 56
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y I++ GD GKTS ++ FV+ F + YK T+GVDF+ K+++ G +Q+WDI
Sbjct: 14 YKIIVVGDMGTGKTSMIRRFVEGNFSEFYKITIGVDFANKIITAD---GVKCDIQLWDI 69
>gi|291220854|ref|XP_002730440.1| PREDICTED: RAB family member (rab-19)-like [Saccoglossus
kowalevskii]
Length = 212
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 102/169 (60%), Gaps = 8/169 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD+ VGKT VQ F FL+ +T+GVDF+ K L G+ VKLQ+WD A
Sbjct: 17 FKIVLIGDAGVGKTCVVQRFKSGTFLEKQHSTIGVDFTMKTL---HIDGKKVKLQVWDTA 73
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G II +D+T R+SF +V +W D+ GA + +L+ +
Sbjct: 74 GQERFRTITQSYYRSANGVIIAYDITKRESFNNVPRWVEDVKKYA----GANVMQMLIGN 129
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
K DL R+V +++ +A+ H + + +E S+K+ +E++ L +
Sbjct: 130 KRDLESLREVTVSDAKALAHHHGMLESLETSAKDSTNVEEAFGKLAKEL 178
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 8/72 (11%)
Query: 162 TFSPIQTPS-----YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 216
+++PI+T + I++ GD+ VGKT VQ F FL+ +T+GVDF+ K L
Sbjct: 3 SYNPIETDDSFDFLFKIVLIGDAGVGKTCVVQRFKSGTFLEKQHSTIGVDFTMKTL---H 59
Query: 217 YGGRPVKLQIWD 228
G+ VKLQ+WD
Sbjct: 60 IDGKKVKLQVWD 71
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGD+ VGKT VQ F FL+ +T+GVDF+ K L
Sbjct: 16 LFKIVLIGDAGVGKTCVVQRFKSGTFLEKQHSTIGVDFTMKTL 58
>gi|196003094|ref|XP_002111414.1| hypothetical protein TRIADDRAFT_24368 [Trichoplax adhaerens]
gi|190585313|gb|EDV25381.1| hypothetical protein TRIADDRAFT_24368 [Trichoplax adhaerens]
Length = 215
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 101/170 (59%), Gaps = 11/170 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GD+ VGKT+ + F N + + Y +TVGVDF K + GG+ +KLQIWD AGQ
Sbjct: 23 VMIVGDAGVGKTALLHRFKSNAYNEKYSSTVGVDFFFKTIHS---GGKKIKLQIWDTAGQ 79
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ +++ Y+++++G II FD+T ++SF +V W D+ G + LL+ +K
Sbjct: 80 ERFRTITQSYFRSANGIIIAFDITRKESFLNVPLWLEDIKKYA----GKNVVLLLVGTKT 135
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS---MNFLVDRI 408
DL D R VE++++ A +N IE S+K +ED+ M F + RI
Sbjct: 136 DLDDLRSVELSDVRAFAAHHNIFDVIETSAKTDCNVEDAFYKMAFELKRI 185
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GD+ VGKT+ + F N + + Y +TVGVDF K + GG+ +KLQIWD
Sbjct: 23 VMIVGDAGVGKTALLHRFKSNAYNEKYSSTVGVDFFFKTIHS---GGKKIKLQIWD 75
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
D + +LK++++GD+ VGKT+ + F N + + Y +TVGVDF K +
Sbjct: 16 DYDMLLKVMIVGDAGVGKTALLHRFKSNAYNEKYSSTVGVDFFFKTI 62
>gi|123407029|ref|XP_001302917.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|62736262|gb|AAX97460.1| small Rab GTPase RabA4 [Trichomonas vaginalis]
gi|121884251|gb|EAX89987.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 196
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 104/173 (60%), Gaps = 9/173 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ +Y +I G S VGKT+ ++ V++ F + ++T+GV+F + +L+ GR VKLQIW
Sbjct: 4 VISYKFIIVGASGVGKTAILKRLVEDSFTEESQSTIGVEFDSTMLT---IDGRKVKLQIW 60
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+R+ +S+ YY+N+ G I++FDLT RK+FE + W +D+ + C D ++ L
Sbjct: 61 DTAGQERFRSISKAYYRNAVGVILVFDLTERKTFEDLSSWLYDVHTLC--DPNCVIQ--L 116
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+ +K DL D R + + E +A Q N M ++E S+K I ++ II
Sbjct: 117 IGNKSDLADNRVISLAEADAFA-QRNHMHYLEASAKSGSCISEAFTRCATEII 168
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
SY +I G S VGKT+ ++ V++ F + ++T+GV+F + +L+ GR VKLQIWD
Sbjct: 6 SYKFIIVGASGVGKTAILKRLVEDSFTEESQSTIGVEFDSTMLT---IDGRKVKLQIWD 61
>gi|348532959|ref|XP_003453973.1| PREDICTED: ras-related protein Rab-39B-like [Oreochromis niloticus]
Length = 213
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 104/182 (57%), Gaps = 7/182 (3%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+ I + + +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +
Sbjct: 1 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRI 58
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
KLQIWD AGQ+R+ ++R YY+NS G +++FD+TNR+SF++V W + S
Sbjct: 59 KLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHDWLEEARSHV---QPHS 115
Query: 353 LPCLLLASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
+ LL+ KCDL RQV E E + Y M ++E S+++ + +E + L I
Sbjct: 116 IVFLLVGHKCDLEAQRQVTRQEAEKLAGAYG-MRYVETSARDAINVEHAFTELTRDIFAL 174
Query: 412 KR 413
R
Sbjct: 175 VR 176
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +KLQIWD
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRIKLQIWD 64
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+++VIGDSTVGK+ ++ F + +F TVGVDF ++L+
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLV 50
>gi|25188193|ref|NP_741995.1| ras-related protein Rab-39B [Homo sapiens]
gi|284005012|ref|NP_001164858.1| ras-related protein Rab-39B [Oryctolagus cuniculus]
gi|387762991|ref|NP_001248440.1| ras-related protein Rab-39B [Macaca mulatta]
gi|296236798|ref|XP_002763474.1| PREDICTED: ras-related protein Rab-39B [Callithrix jacchus]
gi|297711485|ref|XP_002832370.1| PREDICTED: ras-related protein Rab-39B [Pongo abelii]
gi|332260636|ref|XP_003279390.1| PREDICTED: ras-related protein Rab-39B [Nomascus leucogenys]
gi|332862067|ref|XP_003317848.1| PREDICTED: ras-related protein Rab-39B [Pan troglodytes]
gi|344306232|ref|XP_003421792.1| PREDICTED: ras-related protein Rab-39B-like [Loxodonta africana]
gi|348552706|ref|XP_003462168.1| PREDICTED: ras-related protein Rab-39B-like [Cavia porcellus]
gi|395861015|ref|XP_003802790.1| PREDICTED: ras-related protein Rab-39B [Otolemur garnettii]
gi|397477274|ref|XP_003809998.1| PREDICTED: ras-related protein Rab-39B [Pan paniscus]
gi|402911919|ref|XP_003918548.1| PREDICTED: ras-related protein Rab-39B [Papio anubis]
gi|403306959|ref|XP_003943983.1| PREDICTED: ras-related protein Rab-39B [Saimiri boliviensis
boliviensis]
gi|426398054|ref|XP_004065217.1| PREDICTED: ras-related protein Rab-39B [Gorilla gorilla gorilla]
gi|27734447|sp|Q96DA2.1|RB39B_HUMAN RecName: Full=Ras-related protein Rab-39B
gi|16307251|gb|AAH09714.1| RAB39B, member RAS oncogene family [Homo sapiens]
gi|21740216|emb|CAD39120.1| hypothetical protein [Homo sapiens]
gi|57209093|emb|CAI41468.1| RAB39B, member RAS oncogene family [Homo sapiens]
gi|117646510|emb|CAL38722.1| hypothetical protein [synthetic construct]
gi|119593032|gb|EAW72626.1| RAB39B, member RAS oncogene family [Homo sapiens]
gi|167045841|gb|ABZ10509.1| RAB39B, member RAS oncogene family (predicted) [Callithrix jacchus]
gi|217418289|gb|ACK44293.1| RAB39B, member RAS oncogene family (predicted) [Oryctolagus
cuniculus]
gi|261859722|dbj|BAI46383.1| RAB39B, member RAS oncogene family [synthetic construct]
gi|351704267|gb|EHB07186.1| Ras-related protein Rab-39B [Heterocephalus glaber]
gi|355705311|gb|EHH31236.1| hypothetical protein EGK_21125 [Macaca mulatta]
gi|355757848|gb|EHH61373.1| hypothetical protein EGM_19373 [Macaca fascicularis]
gi|380809420|gb|AFE76585.1| ras-related protein Rab-39B [Macaca mulatta]
gi|444510549|gb|ELV09633.1| Ras-related protein Rab-39B [Tupaia chinensis]
Length = 213
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 105/173 (60%), Gaps = 7/173 (4%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+ I + + +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +
Sbjct: 1 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRI 58
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
KLQIWD AGQ+R+ ++R YY+NS G +++FD+TNR+SF++V +W L+ +
Sbjct: 59 KLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEW---LEETKVHVQPYQ 115
Query: 353 LPCLLLASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFL 404
+ +L+ KCDL RQV +E E + Y M +IE S+++ + +E + L
Sbjct: 116 IVFVLVGHKCDLDTQRQVTRHEAEKLAAAYG-MKYIETSARDAINVEKAFTDL 167
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +KLQIWD
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRIKLQIWD 64
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+++VIGDSTVGK+ ++ F + +F TVGVDF ++L+
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLV 50
>gi|115497388|ref|NP_001069563.1| ras-related protein Rab-39B [Bos taurus]
gi|194228477|ref|XP_001494357.2| PREDICTED: ras-related protein Rab-39B-like [Equus caballus]
gi|301791696|ref|XP_002930817.1| PREDICTED: ras-related protein Rab-39B-like [Ailuropoda
melanoleuca]
gi|311277243|ref|XP_003135565.1| PREDICTED: ras-related protein Rab-39B-like [Sus scrofa]
gi|426257354|ref|XP_004022294.1| PREDICTED: ras-related protein Rab-39B [Ovis aries]
gi|118573268|sp|Q17QU4.1|RB39B_BOVIN RecName: Full=Ras-related protein Rab-39B
gi|109658249|gb|AAI18178.1| RAB39B, member RAS oncogene family [Bos taurus]
gi|281347654|gb|EFB23238.1| hypothetical protein PANDA_021406 [Ailuropoda melanoleuca]
gi|296471117|tpg|DAA13232.1| TPA: ras-related protein Rab-39B [Bos taurus]
gi|431919189|gb|ELK17894.1| Ras-related protein Rab-39B [Pteropus alecto]
gi|440902928|gb|ELR53658.1| Ras-related protein Rab-39B [Bos grunniens mutus]
Length = 213
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 105/173 (60%), Gaps = 7/173 (4%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+ I + + +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +
Sbjct: 1 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRI 58
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
KLQIWD AGQ+R+ ++R YY+NS G +++FD+TNR+SF++V +W L+ +
Sbjct: 59 KLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEW---LEETKVHVQPYQ 115
Query: 353 LPCLLLASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFL 404
+ +L+ KCDL RQV +E E + Y M +IE S+++ + +E + L
Sbjct: 116 IVFVLVGHKCDLDTQRQVTRHEAEKLAAAYG-MKYIETSARDAINVEKAFTDL 167
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +KLQIWD
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRIKLQIWD 64
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+++VIGDSTVGK+ ++ F + +F TVGVDF ++L+
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLV 50
>gi|301610828|ref|XP_002934952.1| PREDICTED: ras-related protein Rab-32-like [Xenopus (Silurana)
tropicalis]
Length = 164
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 81/121 (66%), Gaps = 2/121 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ GD VGKTS +Q +V N F Y+ T+GVDF+ K+++ V+LQ+WDIAGQ
Sbjct: 12 VLVVGDLGVGKTSIIQRYVHNVFSQCYRATIGVDFALKIVNWDL--NTMVRLQLWDIAGQ 69
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ M+R+YY+ + G +++ DL + ESV +WK DLDSK L NG +P +LL +KC
Sbjct: 70 ERFGHMTRLYYREAVGALVVCDLGRVATVESVSRWKEDLDSKVCLQNGNPIPVILLGNKC 129
Query: 363 D 363
D
Sbjct: 130 D 130
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+L+ GD VGKTS +Q +V N F Y+ T+GVDF+ K+++ V+LQ+WDI
Sbjct: 12 VLVVGDLGVGKTSIIQRYVHNVFSQCYRATIGVDFALKIVNWDL--NTMVRLQLWDI 66
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LV+GD VGKTS +Q +V N F Y+ T+GVDF+ K+++
Sbjct: 7 EILCKVLVVGDLGVGKTSIIQRYVHNVFSQCYRATIGVDFALKIVN 52
>gi|30424726|ref|NP_780331.1| ras-related protein Rab-39B [Mus musculus]
gi|46577034|sp|Q8BHC1.1|RB39B_MOUSE RecName: Full=Ras-related protein Rab-39B
gi|26332977|dbj|BAC30206.1| unnamed protein product [Mus musculus]
gi|26339664|dbj|BAC33503.1| unnamed protein product [Mus musculus]
gi|29747805|gb|AAH50853.1| RAB39B, member RAS oncogene family [Mus musculus]
gi|30851610|gb|AAH52472.1| RAB39B, member RAS oncogene family [Mus musculus]
gi|74141396|dbj|BAE35978.1| unnamed protein product [Mus musculus]
gi|112293041|dbj|BAF02898.1| Rab39B [Mus musculus]
gi|148697273|gb|EDL29220.1| RAB39B, member RAS oncogene family [Mus musculus]
Length = 213
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 105/173 (60%), Gaps = 7/173 (4%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+ I + + +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +
Sbjct: 1 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRI 58
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
KLQIWD AGQ+R+ ++R YY+NS G +++FD+TNR+SF++V +W L+ +
Sbjct: 59 KLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEW---LEETKVHVQPYQ 115
Query: 353 LPCLLLASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFL 404
+ +L+ KCDL RQV +E E + Y M +IE S+++ + +E + L
Sbjct: 116 IVFVLVGHKCDLDTQRQVTRHEAEKLAAAYG-MKYIETSARDAINVEKAFTDL 167
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +KLQIWD
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRIKLQIWD 64
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+++VIGDSTVGK+ ++ F + +F TVGVDF ++L+
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLV 50
>gi|354490303|ref|XP_003507298.1| PREDICTED: ras-related protein Rab-39B-like [Cricetulus griseus]
gi|344236010|gb|EGV92113.1| Ras-related protein Rab-39B [Cricetulus griseus]
Length = 213
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 105/173 (60%), Gaps = 7/173 (4%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+ I + + +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +
Sbjct: 1 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRI 58
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
KLQIWD AGQ+R+ ++R YY+NS G +++FD+TNR+SF++V +W L+ +
Sbjct: 59 KLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEW---LEETKVHVQPYQ 115
Query: 353 LPCLLLASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFL 404
+ +L+ KCDL RQV +E E + Y M +IE S+++ + +E + L
Sbjct: 116 IVFVLVGHKCDLDTQRQVTRHEAEKLAAAYG-MKYIETSARDAINVEKAFTDL 167
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +KLQIWD
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRIKLQIWD 64
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+++VIGDSTVGK+ ++ F + +F TVGVDF ++L+
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLV 50
>gi|291230396|ref|XP_002735152.1| PREDICTED: RAB35, member RAS oncogene family-like [Saccoglossus
kowalevskii]
Length = 203
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 104/184 (56%), Gaps = 8/184 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F Y T+GVDF + + G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFAGTYITTIGVDFKIRTID---VNGEKVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T SF +V +W H++D C D+ A +L+ +
Sbjct: 66 GQERFRTITSTYYRGTHGVIVVYDVTAADSFVNVKRWLHEIDQNC--DDVAR---ILVGN 120
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
K D P+R+V + E + + E S+K+++ +E+ N + ++ KR +E +
Sbjct: 121 KNDCPERKVVVTEDAKRFSEQMGIKLFETSAKDNINVEEMFNAITQLVLNVKRQNQEQLR 180
Query: 421 RKSS 424
++S
Sbjct: 181 NRTS 184
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS VGK+S + F N F Y T+GVDF + +
Sbjct: 8 LFKLLIIGDSGVGKSSLLLRFADNTFAGTYITTIGVDFKIRTI 50
>gi|440295160|gb|ELP88073.1| rab7, putative [Entamoeba invadens IP1]
Length = 200
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 106/192 (55%), Gaps = 7/192 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ++ GDS VGKTS + +V N+F D YK T+G DF K ++ G+ LQIWD A
Sbjct: 7 FKTILIGDSGVGKTSLINRYVNNQFSDVYKATIGSDFLIKPVT---VNGQTYTLQIWDTA 63
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +RY C+ +Y+ SD C++ FD+TNR+SF + +WK+D L N +P ++ +
Sbjct: 64 GHERYSCVVTTFYRGSDCCVLCFDVTNRESFNHLEKWKNDFIEGANLTNPGSVPIFVVGN 123
Query: 361 KCDLPDRQVEINEIEAV--CHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
K D E++E +A+ C +N + E S+ + D N L ++ +R E++
Sbjct: 124 KIDCDPNTREVSEEQAMEWCKLHN-HQYFETSALNASNVGDFFNALATEVV-GRREEDQE 181
Query: 419 VERKSSIRLSEE 430
E+ I ++++
Sbjct: 182 PEKPQPIEINKK 193
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ++ GDS VGKTS + +V N+F D YK T+G DF K ++ G+ LQIWD
Sbjct: 7 FKTILIGDSGVGKTSLINRYVNNQFSDVYKATIGSDFLIKPVT---VNGQTYTLQIWD 61
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
T+ K ++IGDS VGKTS + +V N+F D YK T+G DF K
Sbjct: 5 TLFKTILIGDSGVGKTSLINRYVNNQFSDVYKATIGSDFLIK 46
>gi|440902734|gb|ELR53487.1| Ras-related protein Rab-19 [Bos grunniens mutus]
Length = 217
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 112/213 (52%), Gaps = 14/213 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT VQ F +++ +NT+GVDF+ + L + G+ VK+Q+WD A
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRAL---EIDGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT R +FESV W H+++ A L +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKY----GAANLVIMLIGN 130
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL + R V + + +Y ++ +E S+KE I++ + ++ +
Sbjct: 131 KCDLWEKRHVLFEDACILAEKYGLLAVLETSAKESKNIDEVFVLMARELMARHSLPLYGE 190
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
S+ L + P + PA + C C
Sbjct: 191 GAPGSLPL------ESTPVLMAPAPREKNQCTC 217
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT VQ F +++ +NT+GVDF+ + L + G+ VK+Q+WD
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRAL---EIDGKKVKMQVWD 72
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGDS VGKT VQ F +++ +NT+GVDF+ + L
Sbjct: 17 LFKIILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRAL 59
>gi|78042536|ref|NP_001030212.1| ras-related protein Rab-19 [Bos taurus]
gi|109892951|sp|Q3ZC27.1|RAB19_BOVIN RecName: Full=Ras-related protein Rab-19
gi|73587379|gb|AAI02962.1| RAB19, member RAS oncogene family [Bos taurus]
gi|296488160|tpg|DAA30273.1| TPA: RAB19, member RAS oncogene family [Bos taurus]
Length = 217
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 112/213 (52%), Gaps = 14/213 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT VQ F +++ +NT+GVDF+ + L + G+ VK+Q+WD A
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRAL---EIDGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT R +FESV W H+++ A L +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKY----GAANLVIMLIGN 130
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL + R V + + +Y ++ +E S+KE I++ + ++ +
Sbjct: 131 KCDLWEKRHVLFEDACILAEKYGLLAVLETSAKESKNIDEVFVLMARELMARHSLPLYGE 190
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
S+ L + P + PA + C C
Sbjct: 191 GAPGSLPL------ESTPVLMAPAPREKNQCTC 217
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT VQ F +++ +NT+GVDF+ + L + G+ VK+Q+WD
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRAL---EIDGKKVKMQVWD 72
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGDS VGKT VQ F +++ +NT+GVDF+ + L
Sbjct: 17 LFKIILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRAL 59
>gi|298706041|emb|CBJ29151.1| Rab8D, RAB family GTPase [Ectocarpus siliculosus]
Length = 223
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 103/167 (61%), Gaps = 10/167 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ GDS+VGKTS V + + F + T+GVD+S +LL + GR VKLQIWD AGQ
Sbjct: 22 ILMIGDSSVGKTSLVLRYDKRGFNLRFTTTIGVDYSDRLL---ELDGRQVKLQIWDTAGQ 78
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASK 361
+R+ ++ +++ ++G ++++D++NR+SFESV W D I++ G ++ +K
Sbjct: 79 ERFHSLTTSFFKRAEGFVLVYDVSNRQSFESVSTWMKD-----IVEQGKRGSDVVICGNK 133
Query: 362 CDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
CDL R+V E E + + + ++E S+KE+L +E++ L R+
Sbjct: 134 CDLQGREVAREEGEQLAAELG-VPYMETSAKENLNVEETFGNLASRV 179
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
IL+ GDS+VGKTS V + + F + T+GVD+S +LL + GR VKLQIWD
Sbjct: 22 ILMIGDSSVGKTSLVLRYDKRGFNLRFTTTIGVDYSDRLL---ELDGRQVKLQIWD 74
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 15/76 (19%)
Query: 75 INALPARELCKSNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFL 134
+N L A + + P+P +++IL+IGDS+VGKTS V + + F
Sbjct: 1 MNGLGAPAVGGAGKPTP---------------LLIRILMIGDSSVGKTSLVLRYDKRGFN 45
Query: 135 DNYKNTVGVDFSTKLL 150
+ T+GVD+S +LL
Sbjct: 46 LRFTTTIGVDYSDRLL 61
>gi|387017964|gb|AFJ51100.1| ras-related protein Rab-35-like [Crotalus adamanteus]
Length = 202
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 106/183 (57%), Gaps = 13/183 (7%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +Y T+GVDF + L G VKLQIWD A
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTLV---INGERVKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+N+ G II++D+TN +SF +V +W H++ C DN + +L+ +
Sbjct: 67 GQERFRTITSTYYRNTHGVIIVYDVTNAESFVNVKRWLHEIGQNC--DN---VCKILVGN 121
Query: 361 KC-DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KC DL +QVE + Q + E S+KE+L +E+ N + ++ R ++E +
Sbjct: 122 KCEDLSRKQVETADARRFSEQMG-VRLFETSAKENLNVEEMFNAITTMVL---RTKQENL 177
Query: 420 ERK 422
R+
Sbjct: 178 ARR 180
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
D + + K+L+IGDS VGK+S + F N F +Y T+GVDF + L
Sbjct: 3 AKDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTL 51
>gi|426228109|ref|XP_004008157.1| PREDICTED: ras-related protein Rab-19 [Ovis aries]
Length = 217
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 111/213 (52%), Gaps = 14/213 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L + G+ VK+Q+WD A
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRAL---EIDGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT R +FESV W H+++ A L +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKY----GAANLVIMLIGN 130
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL + R V + + +Y ++ +E S+KE I++ + ++ +
Sbjct: 131 KCDLWEKRHVLFEDACILAEKYGLLAVLETSAKESKNIDEVFVLMARELMARHSLPLHGG 190
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
S+ L + P + PA + C C
Sbjct: 191 GAPGSLPL------ESTPVLMAPAPREKNQCTC 217
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L + G+ VK+Q+WD
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRAL---EIDGKKVKMQVWD 72
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGDS VGKT VQ F + + +NT+GVDF+ + L
Sbjct: 17 LFKIILIGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRAL 59
>gi|410989743|ref|XP_004001118.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-39B [Felis
catus]
Length = 213
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 105/173 (60%), Gaps = 7/173 (4%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+ I + + +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +
Sbjct: 1 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRI 58
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
KLQIWD AGQ+R+ ++R YY+NS G +++FD+TNR+SF++V +W L+ +
Sbjct: 59 KLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEW---LEETKVHVQPYQ 115
Query: 353 LPCLLLASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFL 404
+ +L+ KCDL RQV +E E + Y M +IE S+++ + +E + L
Sbjct: 116 IVFVLVGHKCDLDTQRQVTRHEAEKLAAAYG-MKYIETSARDAINVEKAFTDL 167
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +KLQIWD
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRIKLQIWD 64
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+++VIGDSTVGK+ ++ F + +F TVGVDF ++L+
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLV 50
>gi|391344946|ref|XP_003746755.1| PREDICTED: ras-related protein Rab-35-like [Metaseiulus
occidentalis]
Length = 203
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 104/177 (58%), Gaps = 11/177 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F NY T+GVDF + + + G VKLQIWD A
Sbjct: 8 FKLLIIGDSGVGKSSLLLRFADNTFSGNYITTIGVDFKIRTI---EVDGERVKLQIWDTA 64
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+TN +SF +V +W H++D C ++ +L+ +
Sbjct: 65 GQERFRTITSTYYRGTHGVIVVYDVTNGESFANVKRWLHEIDQNC-----DVVNRILVGN 119
Query: 361 KCDLPDRQVEINE-IEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
K D P R+V + E +A + N + E S+K++ +E+ N V R++ + EE
Sbjct: 120 KNDDPQRKVVLTEDAQAFADRMN-IELFETSAKDNFNVEEMFN-AVTRMVLKTKKEE 174
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD-- 228
+ +LI GDS VGK+S + F N F NY T+GVDF + + + G VKLQIWD
Sbjct: 8 FKLLIIGDSGVGKSSLLLRFADNTFSGNYITTIGVDFKIRTI---EVDGERVKLQIWDTA 64
Query: 229 ----IYCTLSPIQIPTYPILITGDSTVGKT 254
S T+ +++ D T G++
Sbjct: 65 GQERFRTITSTYYRGTHGVIVVYDVTNGES 94
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS VGK+S + F N F NY T+GVDF + +
Sbjct: 7 LFKLLIIGDSGVGKSSLLLRFADNTFSGNYITTIGVDFKIRTI 49
>gi|321470661|gb|EFX81636.1| hypothetical protein DAPPUDRAFT_195992 [Daphnia pulex]
Length = 201
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 104/177 (58%), Gaps = 8/177 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F NY T+GVDF + + G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFSGNYITTIGVDFKIRTIL---LNGERVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+++ +SF +V +W H+++ C + N +L+ +
Sbjct: 66 GQERFRTITSTYYRGTHGVIVVYDVSSGESFANVKRWLHEIEQNCDVVNR-----ILVGN 120
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
K D+PDR+V + E + E S+K++ +E+ N + +++ +K+ ++E
Sbjct: 121 KDDMPDRKVVLTEDAQRFASQMGIQLFETSAKDNKNVEEMFNAITQQVLLTKKEQKE 177
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
D + + K+L+IGDS VGK+S + F N F NY T+GVDF + +
Sbjct: 4 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGNYITTIGVDFKIRTI 50
>gi|260808582|ref|XP_002599086.1| hypothetical protein BRAFLDRAFT_281466 [Branchiostoma floridae]
gi|229284362|gb|EEN55098.1| hypothetical protein BRAFLDRAFT_281466 [Branchiostoma floridae]
Length = 219
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 99/159 (62%), Gaps = 7/159 (4%)
Query: 235 PIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 294
PI + + +++ GDSTVGK+S ++ F KF++ TVGVDF +L+ + G+ VKL
Sbjct: 4 PIWLYQFRLILIGDSTVGKSSLLRRFTDGKFIEYSDPTVGVDFFARLMEVEP--GKRVKL 61
Query: 295 QIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP 354
Q+WD AGQ+R+ ++R YY+NS G ++++D+TNRKSFE + W H+ + N +
Sbjct: 62 QLWDTAGQERFRSITRSYYRNSVGAVLVYDVTNRKSFEHLESWWHEAKQHTMPHN---MV 118
Query: 355 CLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSK 392
+L+ K DL +R+V E + ++ MS++E S+K
Sbjct: 119 FILVGHKIDLASEREVSQEEGQQFARTHD-MSYLETSAK 156
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 165 PIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
PI + +++ GDSTVGK+S ++ F KF++ TVGVDF +L+ + G+ VKL
Sbjct: 4 PIWLYQFRLILIGDSTVGKSSLLRRFTDGKFIEYSDPTVGVDFFARLMEVEP--GKRVKL 61
Query: 225 QIWD 228
Q+WD
Sbjct: 62 QLWD 65
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
++++IGDSTVGK+S ++ F KF++ TVGVDF +L+
Sbjct: 10 FRLILIGDSTVGKSSLLRRFTDGKFIEYSDPTVGVDFFARLM 51
>gi|387849222|ref|NP_001248483.1| ras-related protein Rab-19 [Macaca mulatta]
gi|383418347|gb|AFH32387.1| ras-related protein Rab-19 [Macaca mulatta]
Length = 217
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 110/213 (51%), Gaps = 14/213 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L G+ VK+Q+WD A
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLD---IDGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT R +FESV W H+++ A L +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKY----GAANLVIMLIGN 130
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL + R V + + +Y ++ +E S+KE I++ + +I +
Sbjct: 131 KCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDELFVLMAKELIARNSLHLYGE 190
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
+S+ L D P + T+C C
Sbjct: 191 SALNSLPL------DSSPVLMAQGPSEKTHCTC 217
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L G+ VK+Q+WD
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLD---IDGKKVKMQVWD 72
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGDS VGKT VQ F + + +NT+GVDF+ + L
Sbjct: 17 LFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSL 59
>gi|432920687|ref|XP_004079986.1| PREDICTED: ras-related protein Rab-39B-like [Oryzias latipes]
Length = 213
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 102/173 (58%), Gaps = 7/173 (4%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+ I + + +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +
Sbjct: 1 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIET--GKRI 58
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
KLQIWD AGQ+R+ ++R YY+NS G +++FD+TNR+SF++V W + S
Sbjct: 59 KLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHDWLEEARSHV---QPHT 115
Query: 353 LPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFL 404
+ +L+ KCDL RQV E E + Y M +IE S+++ + +E + L
Sbjct: 116 IVFMLVGHKCDLETQRQVTQQEAEKLSGAYG-MRYIETSARDAINVEHAFTEL 167
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +KLQIWD
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIET--GKRIKLQIWD 64
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+++VIGDSTVGK+ ++ F + +F TVGVDF ++L+
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLV 50
>gi|225709744|gb|ACO10718.1| Ras-related protein Rab-32 [Caligus rogercresseyi]
Length = 202
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 101/178 (56%), Gaps = 17/178 (9%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK--LLSHKKYGGRPVKLQIWD 298
Y +++ GD GK+++++ + F +NY TVGVDF K L H ++LQ+WD
Sbjct: 18 YKVIVIGDVNTGKSAFIRRYTDGSFAENYLATVGVDFHLKDIQLEHNV----EIRLQLWD 73
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
IAGQ+R+ M+R Y+ S G I++D T+ SF +VV+WK +LD KC L G +P +L+
Sbjct: 74 IAGQERFSRMTRAYFTGSVGAFIIYDSTDLSSFRAVVKWKKELDLKCSLPEGQNIPAILI 133
Query: 359 ASKCD------LPDRQVEINEIEAVCHQYNFMS-WIEVSSKEHLMIEDSMNFLVDRII 409
A+K D LP+ + E+ + F+ W S+K IE+S++ ++ I+
Sbjct: 134 ANKNDLEPCAGLPNEE----EMSQFLKENGFIPIWFRTSAKTGENIEESIDLMLKLIL 187
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK--LLSHKKYGGRPVKLQIWD 228
Y +++ GD GK+++++ + F +NY TVGVDF K L H ++LQ+WD
Sbjct: 18 YKVIVIGDVNTGKSAFIRRYTDGSFAENYLATVGVDFHLKDIQLEHNV----EIRLQLWD 73
Query: 229 I 229
I
Sbjct: 74 I 74
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 104 DAETVL-KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
D E+ L K++VIGD GK+++++ + F +NY TVGVDF K
Sbjct: 12 DTESRLYKVIVIGDVNTGKSAFIRRYTDGSFAENYLATVGVDFHLK 57
>gi|260808596|ref|XP_002599093.1| hypothetical protein BRAFLDRAFT_114662 [Branchiostoma floridae]
gi|229284369|gb|EEN55105.1| hypothetical protein BRAFLDRAFT_114662 [Branchiostoma floridae]
Length = 219
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 102/168 (60%), Gaps = 7/168 (4%)
Query: 235 PIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 294
PI + + +++ GDSTVGK+S ++ F KF++ TVGVDF +L+ + G+ VKL
Sbjct: 4 PIWLYQFRLILIGDSTVGKSSLLRRFTDGKFIEYSDPTVGVDFFARLMEVEP--GKRVKL 61
Query: 295 QIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP 354
Q+WD AGQ+R+ ++R YY+NS G ++++D+TNRKSFE + W H+ + N +
Sbjct: 62 QLWDTAGQERFRSITRSYYRNSVGAVLVYDVTNRKSFEHLESWWHEAKQHTMPHN---MV 118
Query: 355 CLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
+L+ K DL +R+V E + ++ MS++E S+K +E +
Sbjct: 119 FILVGHKIDLASEREVSQEEGQQFARTHD-MSYLETSAKNAENVEKAF 165
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 165 PIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
PI + +++ GDSTVGK+S ++ F KF++ TVGVDF +L+ + G+ VKL
Sbjct: 4 PIWLYQFRLILIGDSTVGKSSLLRRFTDGKFIEYSDPTVGVDFFARLMEVEP--GKRVKL 61
Query: 225 QIWD 228
Q+WD
Sbjct: 62 QLWD 65
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
++++IGDSTVGK+S ++ F KF++ TVGVDF +L+
Sbjct: 10 FRLILIGDSTVGKSSLLRRFTDGKFIEYSDPTVGVDFFARLM 51
>gi|328794038|ref|XP_003251968.1| PREDICTED: ras-related protein Rab-32-like, partial [Apis
mellifera]
Length = 161
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 97/170 (57%), Gaps = 30/170 (17%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+ GKTS ++ +V F +Y+ T+G
Sbjct: 19 YKILVIGELGAGKTSIIKRYVHQFFSQHYRATIG-------------------------- 52
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+RVYY+ + G I+FD+T + ++VV+WK DLDSK L +G+ +PC+LLA+
Sbjct: 53 GQERFGNMTRVYYKEAVGAFIVFDVTRSATLDAVVKWKQDLDSKVQLPDGSPIPCVLLAN 112
Query: 361 KCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
KCD ++ +N +++ C + NF W E S+KE++ IE++ FLV++
Sbjct: 113 KCD-QQKEGLVNSPAKMDEYCKEKNFAGWFETSAKENINIEEAARFLVNK 161
>gi|431911652|gb|ELK13800.1| Ras-related protein Rab-19 [Pteropus alecto]
Length = 217
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 99/170 (58%), Gaps = 8/170 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L + G+ VK+Q+WD A
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYAETQQNTIGVDFTVRSL---EIDGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT R +FESV W H+++ A L +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKY----GAANLVVMLIGN 130
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL + R V + + +Y ++ +E S+KE I++ + +I
Sbjct: 131 KCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELI 180
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L + G+ VK+Q+WD
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYAETQQNTIGVDFTVRSL---EIDGKKVKMQVWD 72
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGDS VGKT VQ F + + +NT+GVDF+ + L
Sbjct: 17 LFKIILIGDSNVGKTCVVQHFKSGVYAETQQNTIGVDFTVRSL 59
>gi|312088377|ref|XP_003145838.1| RAB family member [Loa loa]
gi|307758997|gb|EFO18231.1| Ras-like protein Rab-7a [Loa loa]
Length = 212
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 91/160 (56%), Gaps = 4/160 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK +S G R V +QIWD AGQ
Sbjct: 15 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKDIS---VGDRTVTMQIWDTAGQ 71
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++ +D+TN SF S+ W+ + + + P +LL +K
Sbjct: 72 ERFQSLGVAFYRGADCCVLTYDITNASSFRSLESWRDEFLIQASPRDPEHFPFVLLGNKI 131
Query: 363 DL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL R V +A C N + + EVS+KE + +E +
Sbjct: 132 DLEAKRAVSAKRAQAWCQTKNNIKYYEVSAKEAVNVEQAF 171
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK +S G R V +QIWD
Sbjct: 15 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKDIS---VGDRTVTMQIWD 67
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P + +LK++++GDS VGKTS + +V KF + YK T+G DF TK +S
Sbjct: 4 PGGGRKKALLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKDIS 55
>gi|402589927|gb|EJW83858.1| Rab7 protein [Wuchereria bancrofti]
Length = 212
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 92/160 (57%), Gaps = 4/160 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK +S G R V +QIWD AGQ
Sbjct: 15 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKDIS---VGDRTVTMQIWDTAGQ 71
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++ +D+TN SF S+ W+ + + + P +LL +K
Sbjct: 72 ERFQSLGVAFYRGADCCVLTYDITNASSFRSLESWRDEFLIQASPRDPEHFPFVLLGNKI 131
Query: 363 DLPDRQ-VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL R+ V +A C N + + EVS+KE + +E +
Sbjct: 132 DLEARRAVSAKRAQAWCQTKNNIKYYEVSAKEAVNVEQAF 171
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK +S G R V +QIWD
Sbjct: 15 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKDIS---VGDRTVTMQIWD 67
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P + +LK++++GDS VGKTS + +V KF + YK T+G DF TK +S
Sbjct: 4 PGGGRKKALLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKDIS 55
>gi|170579042|ref|XP_001894651.1| ras-related protein Rab-7 [Brugia malayi]
gi|158598646|gb|EDP36501.1| ras-related protein Rab-7, putative [Brugia malayi]
Length = 212
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 92/160 (57%), Gaps = 4/160 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK +S G R V +QIWD AGQ
Sbjct: 15 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKDIS---VGDRTVTMQIWDTAGQ 71
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++ +D+TN SF S+ W+ + + + P +LL +K
Sbjct: 72 ERFQSLGVAFYRGADCCVLTYDITNASSFRSLESWRDEFLIQASPRDPEHFPFVLLGNKI 131
Query: 363 DLPDRQ-VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL R+ V +A C N + + EVS+KE + +E +
Sbjct: 132 DLEARRAVSAKRAQAWCQTKNNIKYYEVSAKEAVNVEQAF 171
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK +S G R V +QIWD
Sbjct: 15 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKDIS---VGDRTVTMQIWD 67
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P + +LK++++GDS VGKTS + +V KF + YK T+G DF TK +S
Sbjct: 4 PGGGRKKALLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKDIS 55
>gi|147900245|ref|NP_001090134.1| ras-related protein Rab-19 [Xenopus laevis]
gi|123898987|sp|Q32NQ0.1|RAB19_XENLA RecName: Full=Ras-related protein Rab-19
gi|80476372|gb|AAI08533.1| MGC130981 protein [Xenopus laevis]
Length = 213
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 109/201 (54%), Gaps = 9/201 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT V F F+DN +NT+GVDF+ + L+ G+ VK+Q+WD A
Sbjct: 16 FKIILIGDSNVGKTCVVHRFQSGIFMDNQQNTIGVDFTVRSLN---INGKKVKVQVWDTA 72
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ G II +D+T R+SFESV W ++ A L +L+ +
Sbjct: 73 GQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAGKY----GAANLMLMLMGN 128
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME-EEA 418
K DL + RQ+ E + ++ ++ +E S+KE +++ + +I
Sbjct: 129 KSDLAEKRQILFEEACTLAEKHGLLAVLETSAKESHNVDEVFLLMAKELIARNTFHYHNE 188
Query: 419 VERKSSIRLSEETLRDDQPKK 439
R S I S+ L +P K
Sbjct: 189 SPRNSFILDSKPVLAPPEPDK 209
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT V F F+DN +NT+GVDF+ + L+ G+ VK+Q+WD
Sbjct: 16 FKIILIGDSNVGKTCVVHRFQSGIFMDNQQNTIGVDFTVRSLN---INGKKVKVQVWD 70
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ KI++IGDS VGKT V F F+DN +NT+GVDF+ + L+
Sbjct: 15 LFKIILIGDSNVGKTCVVHRFQSGIFMDNQQNTIGVDFTVRSLN 58
>gi|432895843|ref|XP_004076189.1| PREDICTED: ras-related protein Rab-39B-like [Oryzias latipes]
Length = 213
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 102/170 (60%), Gaps = 7/170 (4%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+ I + + +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +
Sbjct: 1 METIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRI 58
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
KLQIWD AGQ+R+ ++R YY+NS G +++FD+TNR+SF++V W + S
Sbjct: 59 KLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHNWLEEARSHV---QPHS 115
Query: 353 LPCLLLASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
+ LL+ KCDL RQV +E E + Y M ++E S+++ + +E +
Sbjct: 116 IVFLLVGHKCDLEAQRQVTQHEAEKLAGAYG-MRYVETSARDAINVEKAF 164
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +KLQIWD
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRIKLQIWD 64
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+++VIGDSTVGK+ ++ F + +F TVGVDF ++L+
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLV 50
>gi|148922827|ref|NP_001092211.1| RAB39B, member RAS oncogene family [Danio rerio]
gi|148744698|gb|AAI42805.1| Zgc:165464 protein [Danio rerio]
Length = 213
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 103/173 (59%), Gaps = 7/173 (4%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+ I + + +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +
Sbjct: 1 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRI 58
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
KLQIWD AGQ+R+ ++R YY+NS G +++FD+TNR+SF++V +W + S
Sbjct: 59 KLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEEARSHV---QPHS 115
Query: 353 LPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFL 404
+ +L+ KCDL RQV E E + Y M ++E S+++ + +E + L
Sbjct: 116 IVFILVGHKCDLEQQRQVSQQEAEKLAAAYG-MRYVETSARDAINVEKAFTEL 167
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +KLQIWD
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRIKLQIWD 64
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+++VIGDSTVGK+ ++ F + +F TVGVDF ++L+
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLV 50
>gi|340502771|gb|EGR29423.1| Ras family protein, putative [Ichthyophthirius multifiliis]
Length = 207
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 103/171 (60%), Gaps = 9/171 (5%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
T ILI G+S VGKT V + +N+F + + T+GVDF TK L + + +KLQIWD
Sbjct: 9 TLKILIIGNSNVGKTCMVMRYCENQFTNEFYATIGVDFKTKNL---QIDDKIIKLQIWDT 65
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQDR+ ++ YY+ ++G +I++D+T+R SF++V QW ++++ + +L+
Sbjct: 66 AGQDRFRTITNNYYRGANGILIVYDITDRDSFQNVKQWMYEIEKNA----KENVQKILVG 121
Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+KCD D RQV+ E + QYN +++ E S+K IE S LV I+
Sbjct: 122 NKCDQNDQRQVDYEEGLHLSQQYN-LTFFEASAKNSHNIELSFQTLVKNIV 171
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ LKIL+IG+S VGKT V + +N+F + + T+GVDF TK L
Sbjct: 7 DITLKILIIGNSNVGKTCMVMRYCENQFTNEFYATIGVDFKTKNLQ 52
>gi|50728924|ref|XP_416347.1| PREDICTED: ras-related protein Rab-19 [Gallus gallus]
Length = 214
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 113/213 (53%), Gaps = 15/213 (7%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT V F +F + +NT+GVDF+ + + G+ VK+Q+WD A
Sbjct: 16 FKIILIGDSNVGKTCVVHRFKTGQFYEKQQNTIGVDFTVRSMD---IDGKKVKIQVWDTA 72
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ G I+ +DLT R +FES+ W H+++ A L +L+ +
Sbjct: 73 GQERFRTITQSYYRSAHGAILAYDLTRRSTFESIPHWVHEVEKY----GAANLVMMLIGN 128
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D D RQV + + +Y ++ +E S+KE IE+ + +I ++
Sbjct: 129 KSDSVDKRQVLFEDACTLAEKYGLLAVLETSAKEAQNIEEVFVLMAKELIARNTLQLHGE 188
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
+S+ L D +P P+ + T C C
Sbjct: 189 SPPNSVYL------DSRPVITSPSAE-KTQCLC 214
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 159 PYGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 216
P+ + S YL I++ GDS VGKT V F +F + +NT+GVDF+ + +
Sbjct: 2 PFSSSSADDAFDYLFKIILIGDSNVGKTCVVHRFKTGQFYEKQQNTIGVDFTVRSMD--- 58
Query: 217 YGGRPVKLQIWD 228
G+ VK+Q+WD
Sbjct: 59 IDGKKVKIQVWD 70
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ KI++IGDS VGKT V F +F + +NT+GVDF+ +
Sbjct: 15 LFKIILIGDSNVGKTCVVHRFKTGQFYEKQQNTIGVDFTVR 55
>gi|291000955|ref|XP_002683044.1| rab family small GTPase [Naegleria gruberi]
gi|284096673|gb|EFC50300.1| rab family small GTPase [Naegleria gruberi]
Length = 243
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 120/213 (56%), Gaps = 22/213 (10%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y I+ GDST GKT+++Q +V N F YK+T+GVDFS K + + DIA
Sbjct: 15 YKIIFVGDSTCGKTAFIQQYVNNYFSKTYKSTLGVDFSYKEYDY----DENTCFNLQDIA 70
Query: 301 GQDRYI-CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCIL-------DNGAM 352
GQ+R+I M+ V+Y+++ +IM+D+TN +F+ WK D+DSK L +
Sbjct: 71 GQERFIKAMTSVFYRDAVVAVIMYDVTNPVTFDHTKDWKIDIDSKVFLPPLNENDSDDIP 130
Query: 353 LPCLLLASKCDLPDRQ---VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+PC+L+ +K DL + + NE++ ++ F W+E S+K+ ++ ++ +V++++
Sbjct: 131 IPCILVGNKIDLNKHEKLNFKPNELDEYVKKHGFAGWVETSAKDRTNMDKAVKMIVEQVL 190
Query: 410 CSKRMEEEAVER----KSSIRLSEETLRDDQPK 438
+ E+ V+R ++ + ++ + L D PK
Sbjct: 191 ---KYHEKEVQREIRPENPMAINIDKLVGDMPK 220
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 31/41 (75%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ KI+ +GDST GKT+++Q +V N F YK+T+GVDFS K
Sbjct: 14 MYKIIFVGDSTCGKTAFIQQYVNNYFSKTYKSTLGVDFSYK 54
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 210
Y I+ GDST GKT+++Q +V N F YK+T+GVDFS K
Sbjct: 15 YKIIFVGDSTCGKTAFIQQYVNNYFSKTYKSTLGVDFSYK 54
>gi|301756779|ref|XP_002914238.1| PREDICTED: ras-related protein Rab-19-like [Ailuropoda melanoleuca]
Length = 217
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 113/217 (52%), Gaps = 22/217 (10%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L G+ VK+Q+WD A
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRSLD---IDGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT R +FESV W H+++ A L +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKY----GAANLVIMLIGN 130
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL + R V + + +Y ++ +E S+KE I++ F++ M E +
Sbjct: 131 KCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEV--FML--------MARELI 180
Query: 420 ERKSSIRLSEETLR----DDQPKKLVPADKVSTYCWC 452
R S E L D +P + + T C C
Sbjct: 181 ARNSLHLFGESALNSLAPDSRPVLVAQGPREKTQCTC 217
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L G+ VK+Q+WD
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRSLD---IDGKKVKMQVWD 72
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGDS VGKT VQ F + + +NT+GVDF+ + L
Sbjct: 17 LFKIILIGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRSL 59
>gi|290998764|ref|XP_002681950.1| rab family small GTPase [Naegleria gruberi]
gi|284095576|gb|EFC49206.1| rab family small GTPase [Naegleria gruberi]
Length = 215
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 123/207 (59%), Gaps = 21/207 (10%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +++ GDS VGK++ + F QNKF + K T+GV+F K + +Y G +K QIWD A
Sbjct: 7 YKVVVIGDSGVGKSNLITRFTQNKFTKDTKPTIGVEFGAKSI---EYDGVTIKGQIWDTA 63
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +S YY+ ++G +I++D+TN++SF+++ +W +++++ +NG + +L+ +
Sbjct: 64 GQERFRAISAAYYRGANGALIVYDITNQESFDNLEKWFKEIENQG--ENGCI--NILVGN 119
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL RQVE A ++N +S++E S+ + ++++ L+ I
Sbjct: 120 KCDLNHLRQVETATGRAFAEKHN-VSFMETSALDSTNVDEAFTTLLKEIY---------- 168
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKV 446
K+ R S++ D + + + P+DKV
Sbjct: 169 --KTQSRKSKKPEEDRKDEPIGPSDKV 193
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152
D + + K++VIGDS VGK++ + F QNKF + K T+GV+F K + +
Sbjct: 2 DCDVLYKVVVIGDSGVGKSNLITRFTQNKFTKDTKPTIGVEFGAKSIEY 50
>gi|26347571|dbj|BAC37434.1| unnamed protein product [Mus musculus]
Length = 160
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 97/143 (67%), Gaps = 7/143 (4%)
Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA 351
V+LQ+WDIAGQ+R+ M+RVYY+ + G ++FD++ +F++V++WK+DLDSK L NG+
Sbjct: 10 VRLQLWDIAGQERFGNMTRVYYKEALGAFVVFDISRSSTFDAVLKWKNDLDSKVHLPNGS 69
Query: 352 MLPCLLLASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
+P +LLA+KCD D ++++ C + F W E S+K+++ I+++ FLV+ ++
Sbjct: 70 PIPAVLLANKCDQKKDNSQSPSQMDQFCKDHGFTGWFETSAKDNINIDEATRFLVENMLA 129
Query: 411 SKR---MEEEAVERKSSIRLSEE 430
+++ EE ++R I+L EE
Sbjct: 130 NQQSFPSEEIDLDR---IKLVEE 149
>gi|324508943|gb|ADY43771.1| Ras-related protein Rab-7a [Ascaris suum]
Length = 213
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 92/160 (57%), Gaps = 4/160 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V +F + YK T+G DF TK + G R V +QIWD AGQ
Sbjct: 16 VIILGDSGVGKTSLMNQYVNKRFSNQYKATIGADFLTKDV---MIGDRMVTMQIWDTAGQ 72
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++ +D+TN SF+S+ W+ + + + P +LL +K
Sbjct: 73 ERFQSLGVAFYRGADCCVLTYDVTNASSFKSLESWRDEFLIQASPRDPEHFPFVLLGNKI 132
Query: 363 DL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +R V EA C N M + EVS+KE L +E +
Sbjct: 133 DLEANRAVSAKRAEAWCLSKNKMKYYEVSAKEALNVEQAF 172
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V +F + YK T+G DF TK + G R V +QIWD
Sbjct: 16 VIILGDSGVGKTSLMNQYVNKRFSNQYKATIGADFLTKDV---MIGDRMVTMQIWD 68
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+++LK++++GDS VGKTS + +V +F + YK T+G DF TK
Sbjct: 11 KSLLKVIILGDSGVGKTSLMNQYVNKRFSNQYKATIGADFLTK 53
>gi|239915976|ref|NP_001008749.2| ras-related protein Rab-19 [Homo sapiens]
gi|114616316|ref|XP_001153248.1| PREDICTED: ras-related protein Rab-19 isoform 1 [Pan troglodytes]
gi|397484561|ref|XP_003813442.1| PREDICTED: ras-related protein Rab-19 [Pan paniscus]
gi|426358117|ref|XP_004046368.1| PREDICTED: ras-related protein Rab-19 [Gorilla gorilla gorilla]
gi|158513667|sp|A4D1S5.2|RAB19_HUMAN RecName: Full=Ras-related protein Rab-19
gi|187954847|gb|AAI40797.1| RAB19 protein [Homo sapiens]
Length = 217
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 110/217 (50%), Gaps = 22/217 (10%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L G+ VK+Q+WD A
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLD---IDGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT R +FES+ W H+++ A + +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKY----GAANVVIMLIGN 130
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL + R V + + +Y ++ +E S+KE IE+ M +E +
Sbjct: 131 KCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVFVL----------MAKELI 180
Query: 420 ERKSSIRLSEETLR----DDQPKKLVPADKVSTYCWC 452
R S E L D P + T+C C
Sbjct: 181 ARNSLHLYGESALNGLPLDSSPVLMAQGPSEKTHCTC 217
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L G+ VK+Q+WD
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLD---IDGKKVKMQVWD 72
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGDS VGKT VQ F + + +NT+GVDF+ + L
Sbjct: 17 LFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSL 59
>gi|348518962|ref|XP_003447000.1| PREDICTED: ras-related protein Rab-39B-like [Oreochromis niloticus]
Length = 213
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 101/170 (59%), Gaps = 7/170 (4%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+ I + + +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +
Sbjct: 1 METIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRI 58
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
KLQIWD AGQ+R+ ++R YY+NS G +++FD+TNR+SF++V W + S
Sbjct: 59 KLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHNWLEEAQSHV---QPHS 115
Query: 353 LPCLLLASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
+ LL+ KCDL RQV E E + Y M ++E S+++ + +E +
Sbjct: 116 IIFLLVGHKCDLEAQRQVTQQEAEKLAGAYG-MRYVETSARDAINVEKAF 164
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +KLQIWD
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRIKLQIWD 64
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+++VIGDSTVGK+ ++ F + +F TVGVDF ++L+
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLV 50
>gi|167536519|ref|XP_001749931.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771646|gb|EDQ85310.1| predicted protein [Monosiga brevicollis MX1]
Length = 305
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 97/173 (56%), Gaps = 6/173 (3%)
Query: 246 TGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY 305
T GKTS ++ +V F YK ++GVDFS K L+ +P+ LQ+WDIAG +RY
Sbjct: 107 TCSHATGKTSLIKRYVDGSFDSEYKLSIGVDFSLKNLT---IDDQPIALQLWDIAGHERY 163
Query: 306 ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365
M+ YY+ + +++FDL+ +F+S+V+W DL+ K +L NG +P +L+A+K D
Sbjct: 164 RSMTSTYYRYAMAAVLVFDLSRPATFDSIVKWHTDLNDKVMLANGDRVPAILIANKADSI 223
Query: 366 DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
++ ++ C ++ F+ W S+K I ++ L +I R+ EA
Sbjct: 224 LGPIDEAMLDEYCSKHGFLGWFATSAKTGQNIGEAFETLAREVI---RVANEA 273
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 176 TGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
T GKTS ++ +V F YK ++GVDFS K L+ +P+ LQ+WDI
Sbjct: 107 TCSHATGKTSLIKRYVDGSFDSEYKLSIGVDFSLKNLT---IDDQPIALQLWDI 157
>gi|91084289|ref|XP_967046.1| PREDICTED: similar to ras-related protein Rab, putative [Tribolium
castaneum]
gi|270008813|gb|EFA05261.1| hypothetical protein TcasGA2_TC015416 [Tribolium castaneum]
Length = 201
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 108/183 (59%), Gaps = 11/183 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +Y T+GVDF K +S G+ VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIKTVS---LDGQKVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+TN +SF +V +W H+++ C + N +L+ +
Sbjct: 66 GQERFRTITSTYYRGTHGVIVVYDVTNGESFANVKRWLHEIEQNCDVVNR-----VLVGN 120
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
K D PDR+V + E + E S+K+++ +E+ M + R++ R ++E E
Sbjct: 121 KNDTPDRKVVLTEDAQRFADTMNIQLFETSAKDNVNVEE-MFMAITRLVL--RSKQEMKE 177
Query: 421 RKS 423
R++
Sbjct: 178 RQN 180
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F +Y T+GVDF K +S G+ VKLQIWD
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIKTVS---LDGQKVKLQIWD 63
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
D + + K+L+IGDS VGK+S + F N F +Y T+GVDF K +S
Sbjct: 2 ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIKTVS 51
>gi|395539510|ref|XP_003771711.1| PREDICTED: ras-related protein Rab-19 [Sarcophilus harrisii]
Length = 217
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 100/170 (58%), Gaps = 8/170 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT VQ F + D+ +NT+GVDF+ + L + G+ VK+QIWD A
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGLYTDSQQNTIGVDFTVRSL---EVDGKKVKMQIWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++ II +DLT R +FESV W H+++ A L +L+ +
Sbjct: 75 GQERFRTITQSYYRSANAAIIAYDLTRRSTFESVPHWIHEIEKY----GAANLVIMLIGN 130
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
K DL D R V + + ++ ++ +E S+KE I++ + +I
Sbjct: 131 KADLCDKRHVLFEDACTLAEKHGLLAVLETSAKESKNIDEVFMLMAKELI 180
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 164 SPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 221
+P +T YL I++ GDS VGKT VQ F + D+ +NT+GVDF+ + L + G+
Sbjct: 9 TPDETFDYLFKIILIGDSNVGKTCVVQHFKSGLYTDSQQNTIGVDFTVRSL---EVDGKK 65
Query: 222 VKLQIWD 228
VK+QIWD
Sbjct: 66 VKMQIWD 72
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGDS VGKT VQ F + D+ +NT+GVDF+ + L
Sbjct: 17 LFKIILIGDSNVGKTCVVQHFKSGLYTDSQQNTIGVDFTVRSL 59
>gi|405969854|gb|EKC34800.1| Ras-related protein Rab-39B [Crassostrea gigas]
Length = 214
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 22/226 (9%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+ PI + +++ GDSTVGK+S ++ F + KF D TVGVDF +L+ K+ G V
Sbjct: 2 VEPIFDFQFRLILIGDSTVGKSSLLKYFTEGKFTDECDPTVGVDFYARLIEVKQ--GVRV 59
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
KLQ+WD AGQ+R+ ++R YY+NS G +I+FD+TNR+SFE++ W H +S+ ++ +
Sbjct: 60 KLQLWDTAGQERFRSITRSYYRNSVGALIVFDITNRRSFENLAGWLH--ESRAHIEPQKV 117
Query: 353 LPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
+ +++ K D D RQV E + N + ++E S+K +E++ +V R
Sbjct: 118 V-YVVVGHKADRDDERQVTTREGRMFA-EMNGLKYVETSAKTGQNVEEAF-LMVAR---- 170
Query: 412 KRMEEEAVERKSSIRLSE-------ETLRDDQPKKLVPADKVSTYC 450
E A+ + IR+ E R QP ++ +K S C
Sbjct: 171 ---EVHALLEQGKIRVEEGWDGVKTGFTRPAQPFHVIEGEKESGGC 213
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
PI + +++ GDSTVGK+S ++ F + KF D TVGVDF +L+ K+ G VK
Sbjct: 3 EPIFDFQFRLILIGDSTVGKSSLLKYFTEGKFTDECDPTVGVDFYARLIEVKQ--GVRVK 60
Query: 224 LQIWD 228
LQ+WD
Sbjct: 61 LQLWD 65
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 154
++++IGDSTVGK+S ++ F + KF D TVGVDF +L+ K+
Sbjct: 10 FRLILIGDSTVGKSSLLKYFTEGKFTDECDPTVGVDFYARLIEVKQ 55
>gi|89027972|gb|ABD59352.1| small GTP binding protein Rab1A [Saccharum officinarum]
Length = 207
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 123/201 (61%), Gaps = 11/201 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS+VGK+ ++ F + ++D+Y +T+GVDF + + + G+ +KLQIWD A
Sbjct: 9 FKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTIEME---GKTIKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G II++D+T+ +SF +V QW ++D N ++ LL+ +
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLSEIDRYA---NDSVCK-LLVGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL + R V+ + +A + + ++E S+KE + +E++ + I SK + A+
Sbjct: 122 KCDLAESRTVDTSVAQAYAEEIG-IPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAAL 180
Query: 420 ERKSS--IRLSEETLRDDQPK 438
ERK S +++ + ++ +Q K
Sbjct: 181 ERKPSNIVQMKGQPIQQEQQK 201
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 40/58 (68%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS+VGK+ ++ F + ++D+Y +T+GVDF + + + G+ +KLQIWD
Sbjct: 9 FKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTIEME---GKTIKLQIWD 63
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 32/43 (74%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS+VGK+ ++ F + ++D+Y +T+GVDF + +
Sbjct: 8 LFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTI 50
>gi|345807749|ref|XP_003435654.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-39B,
partial [Canis lupus familiaris]
Length = 210
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 104/170 (61%), Gaps = 7/170 (4%)
Query: 236 IQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQ 295
I + + +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +KLQ
Sbjct: 1 IWLYQFRLIVIGDSTVGKSCLIRRFXEGRFAQVSDPTVGVDFFSRLVEIEP--GKRIKLQ 58
Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
IWD AGQ+R+ ++R YY+NS G +++FD+TNR+SF++V +W L+ + +
Sbjct: 59 IWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEW---LEETKVHVQPYQIVF 115
Query: 356 LLLASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFL 404
+L+ KCDL RQV +E E + Y M +IE S+++ + +E + L
Sbjct: 116 VLVGHKCDLDTQRQVTRHEAEKLAAAYG-MKYIETSARDAINVEKAFTDL 164
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +KLQIWD
Sbjct: 6 FRLIVIGDSTVGKSCLIRRFXEGRFAQVSDPTVGVDFFSRLVEIEP--GKRIKLQIWD 61
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+++VIGDSTVGK+ ++ F + +F TVGVDF ++L+
Sbjct: 6 FRLIVIGDSTVGKSCLIRRFXEGRFAQVSDPTVGVDFFSRLV 47
>gi|123398520|ref|XP_001301291.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121882455|gb|EAX88361.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 198
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 115/204 (56%), Gaps = 25/204 (12%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GDS+VGKTS + F+ +F+ N+K+T+G DFS+ + + ++LQIWD AGQ
Sbjct: 8 LVVLGDSSVGKTSIIHNFINKEFVANFKSTIGADFSSTEIDVDQ---NKIELQIWDTAGQ 64
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ +S +Y+ SD CI++FD+TN SF+++ +W+ + K +D+ P +++A+K
Sbjct: 65 ERFHSVSSTFYRGSDACILVFDITNHDSFKNLCKWRQSMLEKGGMDDTRSFPFIIMANKS 124
Query: 363 DLPDRQVEINEIEAVCHQYNFMSW--------IEVSSKEHLMIEDSMNFLVDRI--ICSK 412
DL +Q Q +MS+ I VS+K + IE + F+ +CS+
Sbjct: 125 DLESQQ--------AVSQEEYMSYASEIGAKVINVSAKTGINIEKAFEFVGKEYLRVCSQ 176
Query: 413 RMEEEAVERKSSIRLSEETLRDDQ 436
+ + ++IRL + ++ Q
Sbjct: 177 YVHQLG----TNIRLCQPLVKQSQ 196
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 32/40 (80%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147
V K++V+GDS+VGKTS + F+ +F+ N+K+T+G DFS+
Sbjct: 5 VCKLVVLGDSSVGKTSIIHNFINKEFVANFKSTIGADFSS 44
>gi|317575785|ref|NP_001187403.1| ras-related protein rab-7a [Ictalurus punctatus]
gi|308322921|gb|ADO28598.1| ras-related protein rab-7a [Ictalurus punctatus]
Length = 205
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 107/195 (54%), Gaps = 9/195 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V NKF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNNKFSNQYKATIGADFLTKEV---MVDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T+ +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTSPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL +RQV +A C N + + E S+KE + ++ + + R + E E +
Sbjct: 128 DLENRQVTTKRAQAWCQSKNSIPYFETSAKEAINVDQAFQTIA-RNALKQETEVEPYDFP 186
Query: 423 SSIRLSEETLRDDQP 437
I+ LRDD+P
Sbjct: 187 DQIK-----LRDDRP 196
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V NKF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNNKFSNQYKATIGADFLTKEV---MVDDRLVTMQIWD 63
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V NKF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNNKFSNQYKATIGADFLTK 48
>gi|237835873|ref|XP_002367234.1| Ras family domain-containing protein [Toxoplasma gondii ME49]
gi|211964898|gb|EEB00094.1| Ras family domain-containing protein [Toxoplasma gondii ME49]
gi|221506090|gb|EEE31725.1| ehrab7g protein, putative [Toxoplasma gondii VEG]
Length = 432
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 127/246 (51%), Gaps = 13/246 (5%)
Query: 179 STVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-GRPVKLQIW--DIYCTLSP 235
S VG+ + + G K +N +G+ FS +G G + L +C + P
Sbjct: 167 SVVGRGAGLGGSAAEKLQRLRENVLGLRFSATPFEGLLFGFGLRIGLSSLAPHGFC-MPP 225
Query: 236 IQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK--LLSHKKYGGRPVK 293
+ ++I GDS VGKTS + +V KF + YK T+G DF TK ++ K+ V
Sbjct: 226 KKKALLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKDVVIDDKE-----VT 280
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
+QIWD AGQ+R+ + +Y+ +D C+++FD+TN KSFES+ WK + + +
Sbjct: 281 VQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTNPKSFESLQSWKEEFLIQSSPSDPDSF 340
Query: 354 PCLLLASKCDLPD-RQVEINEIEAVCHQY-NFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
P +++ +K D + R+V ++ EA C Q N + + E S+K + + + R +
Sbjct: 341 PFVVVGNKVDEREKRRVSSSKAEAFCRQSGNDIPYFETSAKTATNVHLAFEEIAKRAMLQ 400
Query: 412 KRMEEE 417
++ +E+
Sbjct: 401 EKQQEQ 406
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
P + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 224 PPKKKALLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 270
>gi|326510941|dbj|BAJ91818.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326531646|dbj|BAJ97827.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 204
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 110/187 (58%), Gaps = 8/187 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS+VGK+ + F + ++D Y +T+GVDF + + + G+ VKLQIWD A
Sbjct: 10 FKLLLIGDSSVGKSCLLLRFADDAYVDTYISTIGVDFKIRTV---ELDGKSVKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G II++D+T+R+SF +V QW ++D + LL+ +
Sbjct: 67 GQERFRTITSSYYRGAHGIIIVYDVTDRESFNNVKQWLSEIDRYA----SDSVCKLLVGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
KCDL D +V E + M+++E S+KE + +E + + I +K + A E
Sbjct: 123 KCDLVDSKVVDTEEAKAFAESLGMNFLETSAKESINVETAF-LTMSSEIKNKMASQPAAE 181
Query: 421 RKSSIRL 427
RKS++ +
Sbjct: 182 RKSTVHV 188
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS+VGK+ + F + ++D Y +T+GVDF + + + G+ VKLQIWD
Sbjct: 10 FKLLLIGDSSVGKSCLLLRFADDAYVDTYISTIGVDFKIRTV---ELDGKSVKLQIWD 64
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S+ + + K+L+IGDS+VGK+ + F + ++D Y +T+GVDF +
Sbjct: 3 ASEYDYLFKLLLIGDSSVGKSCLLLRFADDAYVDTYISTIGVDFKIR 49
>gi|357630896|gb|EHJ78715.1| small GTP binding protein RAB8 [Danaus plexippus]
Length = 209
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 115/199 (57%), Gaps = 10/199 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKTS + F ++ F ++ +T+G+DF + + G+ VKLQIWD A
Sbjct: 9 FKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTID---LDGKKVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ S G ++++D+TN KSFE++ W +++ D + ++L +
Sbjct: 66 GQERFRTITTAYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASAD----VEKMILGN 121
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL RQV E + +Y + ++E S+K+ L +E + + + R I +K +++
Sbjct: 122 KCDLDAKRQVSKERGEQLAVEYQ-IKFVETSAKDSLNVEYAF-YTLARDIKAKMEKKQEA 179
Query: 420 ERKSSIRLSEETLRDDQPK 438
+ R LRD++PK
Sbjct: 180 SNPAGARSGTHQLRDERPK 198
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 5/64 (7%)
Query: 167 QTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
+T YL +L+ GDS VGKTS + F ++ F ++ +T+G+DF + + G+ VKL
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTID---LDGKKVKL 59
Query: 225 QIWD 228
QIWD
Sbjct: 60 QIWD 63
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS VGKTS + F ++ F ++ +T+G+DF + +
Sbjct: 8 LFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTI 50
>gi|363732860|ref|XP_420326.3| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-39B [Gallus
gallus]
Length = 213
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 104/173 (60%), Gaps = 7/173 (4%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+ I + +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +
Sbjct: 1 MEAIWLYQLKLIVIGDSTVGKSCLIRRFTEGRFAQISDPTVGVDFFSRLVEIEP--GKRI 58
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
KLQIWD AGQ+R+ ++R YY+NS G +++FD+TNR+SF++V +W L+ +
Sbjct: 59 KLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEW---LEETKVHVQPYQ 115
Query: 353 LPCLLLASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFL 404
+ +L+ KCDL RQV +E E + Y M +IE S+++ + +E + L
Sbjct: 116 IVFVLVGHKCDLDTQRQVTRHEAEKLAAAYG-MKYIETSARDAINVEKAFTDL 167
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +KLQIWD
Sbjct: 11 LIVIGDSTVGKSCLIRRFTEGRFAQISDPTVGVDFFSRLVEIEP--GKRIKLQIWD 64
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
LK++VIGDSTVGK+ ++ F + +F TVGVDF ++L+
Sbjct: 9 LKLIVIGDSTVGKSCLIRRFTEGRFAQISDPTVGVDFFSRLV 50
>gi|294899961|ref|XP_002776830.1| RAS small GTpases RIC1/ypt1, putative [Perkinsus marinus ATCC
50983]
gi|239884031|gb|EER08646.1| RAS small GTpases RIC1/ypt1, putative [Perkinsus marinus ATCC
50983]
Length = 232
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 102/171 (59%), Gaps = 9/171 (5%)
Query: 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
T IL+ GDS VGK+S + F +N+F N+ T+GVDF K ++ + R V+LQIWD
Sbjct: 22 ATARILVLGDSAVGKSSLLMRFCENRFDSNFVITIGVDFRVKTINIQD---REVRLQIWD 78
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
AGQ+R+ ++ YY+N+ G ++++D+T+ KSF++V W +LD + LL+
Sbjct: 79 TAGQERFRTITPAYYRNAMGVLLIYDMTDSKSFKNVDYWVRNLDEHA----DKTVQKLLV 134
Query: 359 ASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+K D+ R+V E +A+ +Y M++ E S+K L +E + + +R+
Sbjct: 135 GNKADMAAKRKVSTEEGQALADKYG-MTFFETSAKSGLNVEQAFRAIAERV 184
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 8/68 (11%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
IL+ GDS VGK+S + F +N+F N+ T+GVDF K ++ + R V+LQIWD
Sbjct: 26 ILVLGDSAVGKSSLLMRFCENRFDSNFVITIGVDFRVKTINIQD---REVRLQIWDTAGQ 82
Query: 230 --YCTLSP 235
+ T++P
Sbjct: 83 ERFRTITP 90
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ +ILV+GDS VGK+S + F +N+F N+ T+GVDF K ++
Sbjct: 21 DATARILVLGDSAVGKSSLLMRFCENRFDSNFVITIGVDFRVKTIN 66
>gi|170592039|ref|XP_001900777.1| Ras-related protein Rab-35 [Brugia malayi]
gi|158591929|gb|EDP30532.1| Ras-related protein Rab-35, putative [Brugia malayi]
Length = 209
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 116/203 (57%), Gaps = 14/203 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F NY T+GVDF + ++ G+ VKLQIWD A
Sbjct: 14 FKLLIIGDSGVGKSSLLLRFADNTFSPNYITTIGVDFKIRTVT---INGQRVKLQIWDTA 70
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++++T+ SF +V +W H++D+ C + +L+ +
Sbjct: 71 GQERFRTITSTYYRGTHGVIVVYEVTSGDSFSNVKRWLHEIDTNC-----ENVQKVLVGN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNF-MSWIEVSSKEHLMIEDSMNFLVDRIICSKRM---EE 416
K D P+R+V + E++A + + E S+KE++ +E+ N + R++ ++ +
Sbjct: 126 KADDPERRV-VLEVDARRFAETMKIPFFETSAKENINVEEMFN-CITRLVLEAKLRAPQT 183
Query: 417 EAVERKSSIRLSEETLRDDQPKK 439
+ S +RL LR + +K
Sbjct: 184 NIADSGSGVRLGGSILRRHEKRK 206
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F NY T+GVDF + ++ G+ VKLQIWD
Sbjct: 14 FKLLIIGDSGVGKSSLLLRFADNTFSPNYITTIGVDFKIRTVT---INGQRVKLQIWD 68
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P D + + K+L+IGDS VGK+S + F N F NY T+GVDF + ++
Sbjct: 7 PRDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSPNYITTIGVDFKIRTVT 56
>gi|301108333|ref|XP_002903248.1| Rab32/38 family GTPase, putative [Phytophthora infestans T30-4]
gi|262097620|gb|EEY55672.1| Rab32/38 family GTPase, putative [Phytophthora infestans T30-4]
Length = 220
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 109/180 (60%), Gaps = 7/180 (3%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+LI G++ GKTS ++ F Q+KF + Y +T+G DF K++++ + + LQ+WDIAGQ
Sbjct: 3 VLIVGNARCGKTSTIRRFTQDKFNEEYVSTIGADFVEKIIAYDEQ--LTISLQLWDIAGQ 60
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCI-LDNGAMLPCLLLASK 361
DR+ +R Y++ + G +I+ D+T + ++VV WK+++D+ C L+ GA +P +++A+K
Sbjct: 61 DRFAKFTRGYFREARGAVIVCDITRANTIDAVVNWKNEIDTCCKDLNEGAEIPVVMVANK 120
Query: 362 CDL---PDRQVEIN-EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
DL P +++ ++ + N + W S+K I D+ L++R++ R E+
Sbjct: 121 SDLLLDPMGALDLGVNMQKCVDKNNIVEWFRASAKSGERIGDAFQCLINRMVNDYRNGED 180
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+LI G++ GKTS ++ F Q+KF + Y +T+G DF K++++ + + LQ+WDI
Sbjct: 3 VLIVGNARCGKTSTIRRFTQDKFNEEYVSTIGADFVEKIIAYDEQ--LTISLQLWDI 57
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 33/44 (75%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152
+K+L++G++ GKTS ++ F Q+KF + Y +T+G DF K++++
Sbjct: 1 MKVLIVGNARCGKTSTIRRFTQDKFNEEYVSTIGADFVEKIIAY 44
>gi|256082187|ref|XP_002577342.1| rab 3 and [Schistosoma mansoni]
Length = 236
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 104/173 (60%), Gaps = 10/173 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD A
Sbjct: 35 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTIFRQD---KRVKLQIWDTA 91
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN +L+ +
Sbjct: 92 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWVTQIKTYS-WDNA---QVVLVGN 147
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCDL DR V ++ + HQ + + E S+KE++ +++ + LVD IIC K
Sbjct: 148 KCDLVDDRAVSVDRGRHLAHQLG-LEFFEASAKENVNVKNVFDRLVD-IICDK 198
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD
Sbjct: 35 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTIFRQD---KRVKLQIWD 89
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 7/73 (9%)
Query: 78 LPARELCKSNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNY 137
L +R+ ++ S S A+ F+ + K+L+IG+S+VGKTS++ + + F +
Sbjct: 11 LSSRKASEAMSHSRDATDQNFDY-------MFKLLIIGNSSVGKTSFLFRYADDSFTSAF 63
Query: 138 KNTVGVDFSTKLL 150
+TVG+DF K +
Sbjct: 64 VSTVGIDFKVKTI 76
>gi|52353602|gb|AAU44168.1| putative rab1 small GTP-binding protein [Oryza sativa Japonica
Group]
Length = 205
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 111/188 (59%), Gaps = 10/188 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS+VGK+ + F + ++D Y +T+GVDF + + + G+ VKLQIWD A
Sbjct: 8 FKLLLIGDSSVGKSCLLLRFADDSYIDTYISTIGVDFKIRTI---ELDGKTVKLQIWDTA 64
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G II++D+T+ +SF +V QW ++D + LL+ +
Sbjct: 65 GQERFRTITSSYYRGAHGIIIVYDVTDMESFNNVKQWLSEIDRYA----SDSVCKLLVGN 120
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE-AV 419
KCDL D +V E + +S++E S+KE + +E++ FL KRM + AV
Sbjct: 121 KCDLVDSKVVDTEEAKAFAESLGISFLETSAKESINVEEA--FLTMSSDIKKRMATQPAV 178
Query: 420 ERKSSIRL 427
ERK ++ +
Sbjct: 179 ERKPTVHI 186
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS+VGK+ + F + ++D Y +T+GVDF + + + G+ VKLQIWD
Sbjct: 8 FKLLLIGDSSVGKSCLLLRFADDSYIDTYISTIGVDFKIRTI---ELDGKTVKLQIWD 62
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS+VGK+ + F + ++D Y +T+GVDF + +
Sbjct: 7 LFKLLLIGDSSVGKSCLLLRFADDSYIDTYISTIGVDFKIRTI 49
>gi|294879180|ref|XP_002768586.1| RAS small GTpases RIC1/ypt1, putative [Perkinsus marinus ATCC
50983]
gi|239871257|gb|EER01304.1| RAS small GTpases RIC1/ypt1, putative [Perkinsus marinus ATCC
50983]
Length = 238
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 102/171 (59%), Gaps = 9/171 (5%)
Query: 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
T IL+ GDS VGK+S + F +N+F N+ T+GVDF K L ++ R ++LQIWD
Sbjct: 28 ATARILVLGDSAVGKSSLLMRFCENRFDSNFVITIGVDFRVKTLDIQE---RKIRLQIWD 84
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
AGQ+R+ ++ YY+N+ G ++++D+T+ KSF++V W +LD + LL+
Sbjct: 85 TAGQERFRTITPAYYRNAMGVLLIYDMTDLKSFKNVDYWVRNLDQHA----DKTVQKLLV 140
Query: 359 ASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+K D+ R+V E +A+ +Y M++ E S+K L +E + + +R+
Sbjct: 141 GNKADMAAKRKVSTEEGQALADKYG-MTFFETSAKSGLNVEAAFRAIAERV 190
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
IL+ GDS VGK+S + F +N+F N+ T+GVDF K L ++ R ++LQIWD
Sbjct: 32 ILVLGDSAVGKSSLLMRFCENRFDSNFVITIGVDFRVKTLDIQE---RKIRLQIWD 84
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 86 SNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
++S SPRA+ G + + +ILV+GDS VGK+S + F +N+F N+ T+GVDF
Sbjct: 9 ASSSSPRAA--GVDASDDSYDATARILVLGDSAVGKSSLLMRFCENRFDSNFVITIGVDF 66
Query: 146 STKLL 150
K L
Sbjct: 67 RVKTL 71
>gi|221484856|gb|EEE23146.1| rab9, putative [Toxoplasma gondii GT1]
Length = 432
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 127/246 (51%), Gaps = 13/246 (5%)
Query: 179 STVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-GRPVKLQIW--DIYCTLSP 235
S VG+ + + G K +N +G+ FS +G G + L +C + P
Sbjct: 167 SVVGRGAGLGGSAAEKLQRLRENVLGLRFSATPFEGLLFGFGLRIGLSSLAPHGFC-MPP 225
Query: 236 IQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK--LLSHKKYGGRPVK 293
+ ++I GDS VGKTS + +V KF + YK T+G DF TK ++ K+ V
Sbjct: 226 KKKALLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKDVVIDDKE-----VT 280
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
+QIWD AGQ+R+ + +Y+ +D C+++FD+TN KSFES+ WK + + +
Sbjct: 281 VQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTNPKSFESLQSWKEEFLIQSSPSDPDSF 340
Query: 354 PCLLLASKCDLPD-RQVEINEIEAVCHQY-NFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
P +++ +K D + R+V ++ EA C Q N + + E S+K + + + R +
Sbjct: 341 PFVVVGNKVDEREKRRVSSSKAEAFCRQSGNDIPYFETSAKTATNVHLAFEEIAKRAMLQ 400
Query: 412 KRMEEE 417
++ +E+
Sbjct: 401 EKQQEQ 406
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
P + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 224 PPKKKALLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 270
>gi|440800245|gb|ELR21284.1| Ras subfamily protein [Acanthamoeba castellanii str. Neff]
Length = 275
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 104/173 (60%), Gaps = 7/173 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ G + GKTS + V+ F YK+T+GVDF+ K L ++ + +Q+WDIA
Sbjct: 67 YKVLVVGCAATGKTSLIHRTVEGHFSGQYKSTIGVDFALKSLERDQH---KIFVQLWDIA 123
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTN--RKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
GQ+R+ ++RVYY+++ G ++ D T + S ES +WK D+D K L NG LP +L+
Sbjct: 124 GQERFSSLTRVYYRDAVGAFVVIDATADLKTSLESAKKWKDDVDDKVKLPNGEHLPVVLI 183
Query: 359 ASKCDLPDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
A+K DL IN EI+ F W+ S+KE++ +E+++ LVD+I+
Sbjct: 184 ANKSDLLGNIHNINESEIDEFAKANKFAGWLATSAKENINVEEAVGALVDKIL 236
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
Y +L+ G + GKTS + V+ F YK+T+GVDF+ K L ++ + +Q+WDI
Sbjct: 67 YKVLVVGCAATGKTSLIHRTVEGHFSGQYKSTIGVDFALKSLERDQH---KIFVQLWDI 122
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
E + K+LV+G + GKTS + V+ F YK+T+GVDF+ K L ++
Sbjct: 64 EYLYKVLVVGCAATGKTSLIHRTVEGHFSGQYKSTIGVDFALKSLERDQH 113
>gi|218195930|gb|EEC78357.1| hypothetical protein OsI_18114 [Oryza sativa Indica Group]
gi|222629897|gb|EEE62029.1| hypothetical protein OsJ_16811 [Oryza sativa Japonica Group]
Length = 206
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 111/188 (59%), Gaps = 10/188 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS+VGK+ + F + ++D Y +T+GVDF + + + G+ VKLQIWD A
Sbjct: 9 FKLLLIGDSSVGKSCLLLRFADDSYIDTYISTIGVDFKIRTI---ELDGKTVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G II++D+T+ +SF +V QW ++D + LL+ +
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDVTDMESFNNVKQWLSEIDRYA----SDSVCKLLVGN 121
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE-AV 419
KCDL D +V E + +S++E S+KE + +E++ FL KRM + AV
Sbjct: 122 KCDLVDSKVVDTEEAKAFAESLGISFLETSAKESINVEEA--FLTMSSDIKKRMATQPAV 179
Query: 420 ERKSSIRL 427
ERK ++ +
Sbjct: 180 ERKPTVHI 187
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS+VGK+ + F + ++D Y +T+GVDF + + + G+ VKLQIWD
Sbjct: 9 FKLLLIGDSSVGKSCLLLRFADDSYIDTYISTIGVDFKIRTI---ELDGKTVKLQIWD 63
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS+VGK+ + F + ++D Y +T+GVDF + +
Sbjct: 8 LFKLLLIGDSSVGKSCLLLRFADDSYIDTYISTIGVDFKIRTI 50
>gi|50345016|ref|NP_001002178.1| ras-related protein rab-7-like [Danio rerio]
gi|49117792|gb|AAH72717.1| Zgc:91909 [Danio rerio]
gi|182888604|gb|AAI63969.1| Zgc:91909 protein [Danio rerio]
Length = 204
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 102/179 (56%), Gaps = 8/179 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V NKF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNNKFSNQYKATIGADFLTKEV---MVDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTAPTTFKTLDSWRDEFLIQASTSDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
DL +RQV +A C N + + E S+KE + +E + + I +++E+V++
Sbjct: 128 DLDNRQVSTKRAQAWCQSKNNIPYFETSAKEAINVEQAF-----QTIARNALKQESVDK 181
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V NKF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNNKFSNQYKATIGADFLTKEV---MVDDRLVTMQIWD 63
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V NKF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNNKFSNQYKATIGADFLTK 48
>gi|148225612|ref|NP_001089457.1| uncharacterized protein LOC734507 [Xenopus laevis]
gi|67678420|gb|AAH97569.1| MGC114765 protein [Xenopus laevis]
Length = 209
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 102/170 (60%), Gaps = 8/170 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD+ VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 16 FKLILIGDAGVGKTCVVQRFRSGVFAERQGSTIGVDFTMKTLEIQ---GKRVKLQIWDTA 72
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G II +D+T RKSF SV +W D+ G+ + LL+ +
Sbjct: 73 GQERFRTITQSYYRSANGAIIAYDITKRKSFASVPRWIEDVKKYA----GSNIVQLLIGN 128
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
K DL + R+V++ E E + ++ IE S+K+ +E++ + ++
Sbjct: 129 KSDLHESREVQLREAETLARHFDIPCAIETSAKDSSNVEEAFEKMATELM 178
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD+ VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 16 FKLILIGDAGVGKTCVVQRFRSGVFAERQGSTIGVDFTMKTLEIQ---GKRVKLQIWD 70
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+++IGD+ VGKT VQ F F + +T+GVDF+ K L
Sbjct: 15 LFKLILIGDAGVGKTCVVQRFRSGVFAERQGSTIGVDFTMKTL 57
>gi|162463546|ref|NP_001105546.1| GTP-binding protein YPTM1 [Zea mays]
gi|466170|sp|P16976.2|YPTM1_MAIZE RecName: Full=GTP-binding protein YPTM1
gi|287833|emb|CAA44918.1| yptm1 [Zea mays]
Length = 208
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 122/201 (60%), Gaps = 11/201 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS+VGK+ ++ F + ++D+Y +T+GVDF + + + G+ VKLQIWD A
Sbjct: 9 FKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVE---GKTVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G II++D+T+ +SF +V QW ++D N ++ LL+ +
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYA---NDSVRK-LLVGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL + R V+ + +A + + ++E S+KE + +E++ + I SK + A+
Sbjct: 122 KCDLAENRAVDTSVAQAYAQEVG-IPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAAL 180
Query: 420 ERKSS--IRLSEETLRDDQPK 438
ERK S +++ ++ +Q K
Sbjct: 181 ERKPSNVVQMKGRPIQQEQQK 201
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 40/58 (68%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS+VGK+ ++ F + ++D+Y +T+GVDF + + + G+ VKLQIWD
Sbjct: 9 FKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVE---GKTVKLQIWD 63
Score = 44.7 bits (104), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 31/41 (75%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS+VGK+ ++ F + ++D+Y +T+GVDF +
Sbjct: 8 LFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIR 48
>gi|414587082|tpg|DAA37653.1| TPA: ypt-like protein isoform 1 [Zea mays]
gi|414587083|tpg|DAA37654.1| TPA: ypt-like protein isoform 2 [Zea mays]
Length = 208
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 122/201 (60%), Gaps = 11/201 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS+VGK+ ++ F + ++D+Y +T+GVDF + + + G+ VKLQIWD A
Sbjct: 9 FKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVE---GKTVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G II++D+T+ +SF +V QW ++D N ++ LL+ +
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYA---NDSVRK-LLVGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL + R V+ + +A + + ++E S+KE + +E++ + I SK + A+
Sbjct: 122 KCDLAENRAVDTSVAQAYAEEVG-IPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAAL 180
Query: 420 ERKSS--IRLSEETLRDDQPK 438
ERK S +++ ++ +Q K
Sbjct: 181 ERKPSNVVQMKGRPIQQEQQK 201
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 40/58 (68%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS+VGK+ ++ F + ++D+Y +T+GVDF + + + G+ VKLQIWD
Sbjct: 9 FKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVE---GKTVKLQIWD 63
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 31/41 (75%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS+VGK+ ++ F + ++D+Y +T+GVDF +
Sbjct: 8 LFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIR 48
>gi|156396428|ref|XP_001637395.1| predicted protein [Nematostella vectensis]
gi|156224507|gb|EDO45332.1| predicted protein [Nematostella vectensis]
Length = 205
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 102/189 (53%), Gaps = 3/189 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T SF+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTQPNSFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL +R V +A CH N + + E S+KE + +E + + + + E +
Sbjct: 128 DLENRAVSAKRAQAWCHSKNDIPYFETSAKEAINVEQAFQTIAKNALAQETDVELYNDFP 187
Query: 423 SSIRLSEET 431
I+LS +T
Sbjct: 188 DQIKLSGDT 196
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|426354839|ref|XP_004044851.1| PREDICTED: uncharacterized protein LOC101152891 [Gorilla gorilla
gorilla]
Length = 312
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 91/138 (65%), Gaps = 7/138 (5%)
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
Q+R+ M+RVYY+ + G ++FD++ +FE+V++WK DLDSK L NG+ +P +LLA+K
Sbjct: 172 QERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLANK 231
Query: 362 CDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM---EEE 417
CD D ++++ C ++ F W E S+K+++ IE++ FLV++I+ + + EE
Sbjct: 232 CDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILVNHQSFPNEEN 291
Query: 418 AVERKSSIRLSEETLRDD 435
V++ I+L +ETLR +
Sbjct: 292 DVDK---IKLDQETLRAE 306
>gi|119604354|gb|EAW83948.1| GTP-binding protein RAB19B [Homo sapiens]
Length = 217
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 110/217 (50%), Gaps = 22/217 (10%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L G+ VK+Q+WD A
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLD---IDGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT R +FES+ W H+++ A + +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKY----GAANVVIMLIGN 130
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL + R V + + ++ ++ +E S+KE IE+ M +E +
Sbjct: 131 KCDLWEKRHVLFEDACTLAEKHGLLAVLETSAKESKNIEEVFVL----------MAKELI 180
Query: 420 ERKSSIRLSEETLR----DDQPKKLVPADKVSTYCWC 452
R S E L D P + T+C C
Sbjct: 181 ARNSLHLYGESALNGLPLDSSPVLMAQGPSEKTHCTC 217
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L G+ VK+Q+WD
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLD---IDGKKVKMQVWD 72
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGDS VGKT VQ F + + +NT+GVDF+ + L
Sbjct: 17 LFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSL 59
>gi|145545648|ref|XP_001458508.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74834260|emb|CAI44498.1| rab_C41 [Paramecium tetraurelia]
gi|124426328|emb|CAK91111.1| unnamed protein product [Paramecium tetraurelia]
Length = 210
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 108/185 (58%), Gaps = 9/185 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+S VGK+ + + +N+F +N+ NT+GVDF TK ++ G VKLQIWD A
Sbjct: 11 FKVLLIGNSGVGKSCMLMRYSENQFTNNFYNTIGVDFKTKTVA---IGENNVKLQIWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQDR+ ++ YY+ + G II++D+T+R+SFE+V W ++D + +L+ +
Sbjct: 68 GQDRFRTITCSYYRGAQGIIIVYDITDRESFENVKTWIAEIDKYA----SESVNRMLVGN 123
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D+ + R+V E + QY F + E S+K + IE + + I+ + +AV
Sbjct: 124 KADITERREVSYEEGLELSRQYQF-PFYETSAKSSINIEAAFTHITKNILNREIHNSKAV 182
Query: 420 ERKSS 424
RK+S
Sbjct: 183 VRKTS 187
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ G+S VGK+ + + +N+F +N+ NT+GVDF TK ++ G VKLQIWD
Sbjct: 11 FKVLLIGNSGVGKSCMLMRYSENQFTNNFYNTIGVDFKTKTVA---IGENNVKLQIWD 65
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 36/49 (73%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
SD + + K+L+IG+S VGK+ + + +N+F +N+ NT+GVDF TK ++
Sbjct: 5 SDYQFLFKVLLIGNSGVGKSCMLMRYSENQFTNNFYNTIGVDFKTKTVA 53
>gi|312068043|ref|XP_003137028.1| small GTP binding protein [Loa loa]
Length = 209
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 116/203 (57%), Gaps = 14/203 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F NY T+GVDF + ++ G+ VKLQIWD A
Sbjct: 14 FKLLIIGDSGVGKSSLLLRFADNTFSPNYITTIGVDFKIRTVT---INGQRVKLQIWDTA 70
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++++T+ SF +V +W H++D+ C + +L+ +
Sbjct: 71 GQERFRTITSTYYRGTHGVIVVYEVTSGDSFSNVKRWLHEIDTNC-----ENVQKVLVGN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNF-MSWIEVSSKEHLMIEDSMNFLVDRIICSKRM---EE 416
K D P+R+V + E++A + + E S+KE++ +E+ N + R++ ++ +
Sbjct: 126 KADDPERRV-VLEVDARRFAETMKIPFFETSAKENINVEEMFN-CITRLVLEAKLRAPQP 183
Query: 417 EAVERKSSIRLSEETLRDDQPKK 439
+ +RL +LR + +K
Sbjct: 184 NIADSGGGVRLGGSSLRRHEKRK 206
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F NY T+GVDF + ++ G+ VKLQIWD
Sbjct: 14 FKLLIIGDSGVGKSSLLLRFADNTFSPNYITTIGVDFKIRTVT---INGQRVKLQIWD 68
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P P D + + K+L+IGDS VGK+S + F N F NY T+GVDF + ++
Sbjct: 5 PGPRDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSPNYITTIGVDFKIRTVT 56
>gi|242073190|ref|XP_002446531.1| hypothetical protein SORBIDRAFT_06g017650 [Sorghum bicolor]
gi|241937714|gb|EES10859.1| hypothetical protein SORBIDRAFT_06g017650 [Sorghum bicolor]
Length = 207
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 122/201 (60%), Gaps = 11/201 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS+VGK+ ++ F + ++D+Y +T+GVDF + + + G+ +KLQIWD A
Sbjct: 9 FKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTIEME---GKTIKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G II++D+T+ +SF +V QW ++D N + LL+ +
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLSEIDRYA---NDTVCK-LLVGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL + R V+ + +A + + ++E S+K+ + +E++ + I SK + A+
Sbjct: 122 KCDLAESRTVDTSVAQAYAEEIG-IPFLETSAKDSINVEEAFLAMSAAIKNSKARSQAAL 180
Query: 420 ERKSS--IRLSEETLRDDQPK 438
ERK S +++ + ++ +Q K
Sbjct: 181 ERKPSNIVQMKGQPIQQEQQK 201
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 40/58 (68%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS+VGK+ ++ F + ++D+Y +T+GVDF + + + G+ +KLQIWD
Sbjct: 9 FKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTIEME---GKTIKLQIWD 63
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 32/43 (74%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS+VGK+ ++ F + ++D+Y +T+GVDF + +
Sbjct: 8 LFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTI 50
>gi|326912237|ref|XP_003202460.1| PREDICTED: ras-related protein Rab-19-like [Meleagris gallopavo]
Length = 214
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 113/213 (53%), Gaps = 15/213 (7%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT V F +F + +NT+GVDF+ + + G+ VK+Q+WD A
Sbjct: 16 FKIILIGDSNVGKTCVVHRFKTGQFYEKQQNTIGVDFTVRSMD---IDGKKVKIQVWDTA 72
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ G I+ +DLT R +FES+ W H+++ A L +L+ +
Sbjct: 73 GQERFRTITQSYYRSAHGAILAYDLTRRSTFESIPHWIHEVEKY----GAANLVVMLIGN 128
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D D RQV + + ++ ++ +E S+KE +E+ + +I ++
Sbjct: 129 KSDSVDKRQVLFEDACTLAEKHGLLAVLETSAKEAQNVEEVFVLMAKELIARNTLQLHGE 188
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
+S+ L D +P P+ + T C C
Sbjct: 189 SPPNSVYL------DSKPVIASPSAE-KTQCLC 214
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 159 PYGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 216
P+ + S YL I++ GDS VGKT V F +F + +NT+GVDF+ + +
Sbjct: 2 PFSSSSTDDAFDYLFKIILIGDSNVGKTCVVHRFKTGQFYEKQQNTIGVDFTVRSMD--- 58
Query: 217 YGGRPVKLQIWD 228
G+ VK+Q+WD
Sbjct: 59 IDGKKVKIQVWD 70
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ KI++IGDS VGKT V F +F + +NT+GVDF+ +
Sbjct: 15 LFKIILIGDSNVGKTCVVHRFKTGQFYEKQQNTIGVDFTVR 55
>gi|393911053|gb|EFO27043.2| small GTP binding protein, partial [Loa loa]
Length = 236
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 116/203 (57%), Gaps = 14/203 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F NY T+GVDF + ++ G+ VKLQIWD A
Sbjct: 41 FKLLIIGDSGVGKSSLLLRFADNTFSPNYITTIGVDFKIRTVT---INGQRVKLQIWDTA 97
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++++T+ SF +V +W H++D+ C + +L+ +
Sbjct: 98 GQERFRTITSTYYRGTHGVIVVYEVTSGDSFSNVKRWLHEIDTNC-----ENVQKVLVGN 152
Query: 361 KCDLPDRQVEINEIEAVCHQYNF-MSWIEVSSKEHLMIEDSMNFLVDRIICSKRM---EE 416
K D P+R+V + E++A + + E S+KE++ +E+ N + R++ ++ +
Sbjct: 153 KADDPERRV-VLEVDARRFAETMKIPFFETSAKENINVEEMFN-CITRLVLEAKLRAPQP 210
Query: 417 EAVERKSSIRLSEETLRDDQPKK 439
+ +RL +LR + +K
Sbjct: 211 NIADSGGGVRLGGSSLRRHEKRK 233
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F NY T+GVDF + ++ G+ VKLQIWD
Sbjct: 41 FKLLIIGDSGVGKSSLLLRFADNTFSPNYITTIGVDFKIRTVT---INGQRVKLQIWD 95
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P P D + + K+L+IGDS VGK+S + F N F NY T+GVDF + ++
Sbjct: 32 PGPRDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSPNYITTIGVDFKIRTVT 83
>gi|357163775|ref|XP_003579842.1| PREDICTED: GTP-binding protein YPTM1-like [Brachypodium distachyon]
Length = 212
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 117/185 (63%), Gaps = 9/185 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS+VGK+ ++ F + ++D+Y +T+GVDF + + + G+ +KLQIWD A
Sbjct: 9 FKLLLIGDSSVGKSCFLLRFADDAYVDSYISTIGVDFKIRTV---EIDGKTIKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ ++G II++D+T+ +SF +V QW ++D N ++ LL+ +
Sbjct: 66 GQERFRTITSSYYRGANGIIIVYDITDMESFNNVKQWLSEIDKYA---NDSVCK-LLVGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL + R V+ + +A + + ++E S+K+ + +E++ + + I SK + A+
Sbjct: 122 KCDLAESRVVDTSVAQAYADEIG-IPFLETSAKDSINVEEAFLAMSEAIKKSKAGSQGAL 180
Query: 420 ERKSS 424
ERK+S
Sbjct: 181 ERKAS 185
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 40/58 (68%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS+VGK+ ++ F + ++D+Y +T+GVDF + + + G+ +KLQIWD
Sbjct: 9 FKLLLIGDSSVGKSCFLLRFADDAYVDSYISTIGVDFKIRTV---EIDGKTIKLQIWD 63
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 31/41 (75%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS+VGK+ ++ F + ++D+Y +T+GVDF +
Sbjct: 8 LFKLLLIGDSSVGKSCFLLRFADDAYVDSYISTIGVDFKIR 48
>gi|402595111|gb|EJW89037.1| RAB protein [Wuchereria bancrofti]
Length = 209
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 116/203 (57%), Gaps = 14/203 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F NY T+GVDF + ++ G+ VKLQIWD A
Sbjct: 14 FKLLIIGDSGVGKSSLLLRFADNTFSPNYITTIGVDFKIRTVT---INGQRVKLQIWDTA 70
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++++T+ SF +V +W H++D+ C + +L+ +
Sbjct: 71 GQERFRTITSTYYRGTHGVIVVYEVTSGDSFSNVKRWLHEIDTNC-----ENVQKVLVGN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNF-MSWIEVSSKEHLMIEDSMNFLVDRIICSKRM---EE 416
K D P+R+V + E++A + + E S+KE++ +E+ N + R++ ++ +
Sbjct: 126 KADDPERRV-VLEVDARRFAETMKIPFFETSAKENINVEEMFN-CITRLVLEAKLRAPQT 183
Query: 417 EAVERKSSIRLSEETLRDDQPKK 439
+ S +RL LR + +K
Sbjct: 184 NIGDSGSGVRLGGSILRRHEKRK 206
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F NY T+GVDF + ++ G+ VKLQIWD
Sbjct: 14 FKLLIIGDSGVGKSSLLLRFADNTFSPNYITTIGVDFKIRTVT---INGQRVKLQIWD 68
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P D + + K+L+IGDS VGK+S + F N F NY T+GVDF + ++
Sbjct: 7 PRDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSPNYITTIGVDFKIRTVT 56
>gi|114794557|pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
gi|114794558|pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 99/162 (61%), Gaps = 8/162 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWDTA 86
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D+T R SF SV W D+ G+ + LL+ +
Sbjct: 87 GQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA----GSNIVQLLIGN 142
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL + R+V + E +++ Y+ + IE S+K+ +E++
Sbjct: 143 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 159 PYGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 216
P G+ P + +L +++ GD++VGKT VQ F F + +T+GVDF+ K L +
Sbjct: 16 PRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ- 74
Query: 217 YGGRPVKLQIWD 228
G+ VKLQIWD
Sbjct: 75 --GKRVKLQIWD 84
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 97 GFEPRPS-----DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
G PR S + + K++++GD++VGKT VQ F F + +T+GVDF+ K L
Sbjct: 13 GLVPRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTL 71
>gi|167388366|ref|XP_001738539.1| rab17 [Entamoeba dispar SAW760]
gi|165898208|gb|EDR25141.1| rab17, putative [Entamoeba dispar SAW760]
Length = 209
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 98/163 (60%), Gaps = 9/163 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ G+ +VGKTS ++ + F Y+ T+GVDF+ K + + R V+L++WDIAGQ
Sbjct: 12 IIVIGEPSVGKTSTIRKYCHGVFDQLYRATIGVDFAVKFTTVDE---RDVELRLWDIAGQ 68
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
++YI M+RVYY + G IIM+DLTN +F + +WK DL++K N +P LL+ +K
Sbjct: 69 EKYIAMTRVYYNGAHGAIIMYDLTNPDTFAATDRWKEDLENKVKF-NEQSIPALLVGNKA 127
Query: 363 DLPDRQVEIN----EIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
D + E+N ++ A + + I S+K L +E++M
Sbjct: 128 DCLSEE-ELNKAQEDLMAKVAEQKYSDGILTSAKSGLAVEEAM 169
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
I++ G+ +VGKTS ++ + F Y+ T+GVDF+ K + + R V+L++WDI
Sbjct: 12 IIVIGEPSVGKTSTIRKYCHGVFDQLYRATIGVDFAVKFTTVDE---RDVELRLWDI 65
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
LKI+VIG+ +VGKTS ++ + F Y+ T+GVDF+ K
Sbjct: 10 LKIIVIGEPSVGKTSTIRKYCHGVFDQLYRATIGVDFAVKF 50
>gi|334342428|ref|XP_001378446.2| PREDICTED: ras-related protein Rab-43-like [Monodelphis domestica]
Length = 210
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 100/162 (61%), Gaps = 8/162 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 17 FKLVLVGDASVGKTCVVQRFKTGSFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWDTA 73
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D+T + SF SV W D+ G+ + LL+ +
Sbjct: 74 GQERFRTITQSYYRSANGAILAYDITKKSSFLSVPHWIEDVRKYA----GSNIVQLLIGN 129
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL D R+V+++E +++ Y + IE S+K+ +E++
Sbjct: 130 KSDLSDLREVQLSEAQSLAEHYEILCAIETSAKDSSNVEEAF 171
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 17 FKLVLVGDASVGKTCVVQRFKTGSFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWD 71
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K++++GD++VGKT VQ F F + +T+GVDF+ K L
Sbjct: 16 LFKLVLVGDASVGKTCVVQRFKTGSFSERQGSTIGVDFTMKTL 58
>gi|301604368|ref|XP_002931828.1| PREDICTED: ras-related protein Rab-39B-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 212
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 101/165 (61%), Gaps = 7/165 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +KLQIWD A
Sbjct: 8 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRIKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++R YY+NS G +++FD+TNR+SF++V +W + + + +L+
Sbjct: 66 GQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEEAKAHV---QPYQIVFVLVGH 122
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFL 404
KCDL RQV +E E + + M +IE S+++ + +E + L
Sbjct: 123 KCDLDTQRQVTRHEAEKLASSFG-MRYIETSARDAINVEKAFTEL 166
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +KLQIWD
Sbjct: 8 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRIKLQIWD 63
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ +++VIGDSTVGK+ ++ F + +F TVGVDF ++L+
Sbjct: 7 LFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLV 49
>gi|301604366|ref|XP_002931827.1| PREDICTED: ras-related protein Rab-39B-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 211
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 101/165 (61%), Gaps = 7/165 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +KLQIWD A
Sbjct: 7 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRIKLQIWDTA 64
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++R YY+NS G +++FD+TNR+SF++V +W + + + +L+
Sbjct: 65 GQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEEAKAHV---QPYQIVFVLVGH 121
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFL 404
KCDL RQV +E E + + M +IE S+++ + +E + L
Sbjct: 122 KCDLDTQRQVTRHEAEKLASSFG-MRYIETSARDAINVEKAFTEL 165
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +KLQIWD
Sbjct: 7 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRIKLQIWD 62
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+++VIGDSTVGK+ ++ F + +F TVGVDF ++L+
Sbjct: 7 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLV 48
>gi|89027974|gb|ABD59353.1| small GTP binding protein Rab1A [Saccharum officinarum]
Length = 207
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 122/201 (60%), Gaps = 11/201 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS+VGK+ ++ F + ++D+Y +T+GVDF + + + G+ +KLQIWD A
Sbjct: 9 FKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTIEME---GKTIKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G II++D+T+ +SF + QW ++D N ++ LL+ +
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDITDMESFNNAKQWLSEIDRYA---NDSVCK-LLVGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL + R V+ + +A + + ++E S+KE + +E++ + I SK + A+
Sbjct: 122 KCDLAESRTVDTSVAQAYAEEIG-IPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAAL 180
Query: 420 ERKSS--IRLSEETLRDDQPK 438
ERK S +++ + ++ +Q K
Sbjct: 181 ERKPSNIVQMKGQPIQQEQQK 201
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 40/58 (68%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS+VGK+ ++ F + ++D+Y +T+GVDF + + + G+ +KLQIWD
Sbjct: 9 FKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTIEME---GKTIKLQIWD 63
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 32/43 (74%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS+VGK+ ++ F + ++D+Y +T+GVDF + +
Sbjct: 8 LFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTI 50
>gi|193713749|ref|XP_001945092.1| PREDICTED: ras-related protein Rab-43-like isoform 1 [Acyrthosiphon
pisum]
gi|328718639|ref|XP_003246535.1| PREDICTED: ras-related protein Rab-43-like isoform 2 [Acyrthosiphon
pisum]
Length = 235
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 102/163 (62%), Gaps = 9/163 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD GKT VQ F + +N NT+GVDFS K + K G+ VKLQIWD A
Sbjct: 38 FKIVLIGDCGTGKTCVVQRFKSGTYAENQGNTIGVDFSMKTI---KIDGKKVKLQIWDTA 94
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +R+ +++ YY++++G ++++D+T R +F ++ +W ++ + + +L+ +
Sbjct: 95 GHERFRTITQSYYRSANGVLLVYDITKRATFLNLQRWVEEVRRY----TSSNVLLVLIGN 150
Query: 361 KCDLPD-RQVEINEIEAVCHQY-NFMSWIEVSSKEHLMIEDSM 401
KCDL + RQVE++E +A+C + +S +E S+KE+ IE++
Sbjct: 151 KCDLEENRQVELSEADAMCEYFPELLSVLETSAKENKNIEEAF 193
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD GKT VQ F + +N NT+GVDFS K + K G+ VKLQIWD
Sbjct: 38 FKIVLIGDCGTGKTCVVQRFKSGTYAENQGNTIGVDFSMKTI---KIDGKKVKLQIWD 92
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P + + + KI++IGD GKT VQ F + +N NT+GVDFS K +
Sbjct: 29 PTEDNFDFLFKIVLIGDCGTGKTCVVQRFKSGTYAENQGNTIGVDFSMKTI 79
>gi|357135065|ref|XP_003569132.1| PREDICTED: ras-related protein RABD1-like [Brachypodium distachyon]
Length = 205
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 112/189 (59%), Gaps = 12/189 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS+VGK+ + F + ++D Y +T+GVDF + + + G+ VKLQIWD A
Sbjct: 10 FKLLLIGDSSVGKSCLLLRFADDAYVDTYISTIGVDFKIRTV---ELDGKSVKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G II++D+T+ +SF +V QW ++D + LL+ +
Sbjct: 67 GQERFRTITSSYYRGAHGIIIVYDVTDMESFNNVKQWLSEIDRYA----SDSVCKLLVGN 122
Query: 361 KCDLPDRQ-VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE-A 418
KCDL D + V+ E +A+ M+++E S+KE + +E + FL KRM + A
Sbjct: 123 KCDLVDSKVVDTEEAKALADSLG-MTFLETSAKESINVEKA--FLTMSSEIKKRMATQPA 179
Query: 419 VERKSSIRL 427
ERK ++ L
Sbjct: 180 AERKPTVHL 188
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS+VGK+ + F + ++D Y +T+GVDF + + + G+ VKLQIWD
Sbjct: 10 FKLLLIGDSSVGKSCLLLRFADDAYVDTYISTIGVDFKIRTV---ELDGKSVKLQIWD 64
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS+VGK+ + F + ++D Y +T+GVDF +
Sbjct: 9 LFKLLLIGDSSVGKSCLLLRFADDAYVDTYISTIGVDFKIR 49
>gi|195134256|ref|XP_002011553.1| GI11034 [Drosophila mojavensis]
gi|193906676|gb|EDW05543.1| GI11034 [Drosophila mojavensis]
Length = 204
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 123/217 (56%), Gaps = 29/217 (13%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELR---GKKIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSFE++V+W ++D D + ++L +
Sbjct: 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANED----VEKMILGN 122
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D++V E EA+ +++ + ++E S+K ++ IE R C EA+
Sbjct: 123 KCDMSDKRVVSKERGEAIAREHS-IRFMETSAKSNINIE--------RAFCEL---AEAI 170
Query: 420 ERKSSIRLSEETLRDDQPKKLV----PADKVSTYCWC 452
K+S R S E P+++V +DK ++Y C
Sbjct: 171 LDKTSGRESAE-----NPERVVIDRGNSDKATSYSKC 202
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELR---GKKIKLQIWD 64
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS VGKT + F + F + +T+G+DF K
Sbjct: 9 LFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIK 49
>gi|111143508|gb|ABH06562.1| small Rab GTPase [Trichomonas vaginalis]
gi|111143526|gb|ABH06563.1| small Rab GTPase [Trichomonas vaginalis]
Length = 200
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 104/166 (62%), Gaps = 8/166 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S VGK+ + F ++ F++NY +T+GVDF + + + G VKLQIWD A
Sbjct: 9 FKVLIVGESGVGKSCLLLRFTEDLFIENYISTIGVDFKIRTIEQE---GAKVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY S+G ++++D+T+RK+FE + W +++ ++ +L+ +
Sbjct: 66 GQERFRAITKSYYHGSNGIVVVYDITDRKTFEKISDWFEQINTSEPNEDSCK---ILIGN 122
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLV 405
KCDL + RQV + E E + YN + ++E S+K+ + +++ + +
Sbjct: 123 KCDLNESRQVSLEEGEQLARDYN-VPFMETSAKDSINVDNLFDLMA 167
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S VGK+ + F ++ F++NY +T+GVDF + + + G VKLQIWD
Sbjct: 9 FKVLIVGESGVGKSCLLLRFTEDLFIENYISTIGVDFKIRTIEQE---GAKVKLQIWD 63
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 35/52 (67%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 153
+D + + K+L++G+S VGK+ + F ++ F++NY +T+GVDF + + +
Sbjct: 2 SNDYDLLFKVLIVGESGVGKSCLLLRFTEDLFIENYISTIGVDFKIRTIEQE 53
>gi|78045539|ref|NP_001030253.1| ras-related protein Rab-7a [Bos taurus]
gi|108860919|sp|Q3T0F5.1|RAB7A_BOVIN RecName: Full=Ras-related protein Rab-7a
gi|74354082|gb|AAI02416.1| RAB7A, member RAS oncogene family [Bos taurus]
Length = 207
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLV 405
DL +RQV +A C+ N + + E S+KE + +E + +V
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIV 170
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|297263149|ref|XP_001094209.2| PREDICTED: ras-related protein Rab-43-like [Macaca mulatta]
Length = 270
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 102/170 (60%), Gaps = 8/170 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTL---EIQGKRVKLQIWDTA 75
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D+T R SF SV W D+ G+ + LL+ +
Sbjct: 76 GQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA----GSNIVQLLIGN 131
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
K DL + R+V + E +++ Y+ + IE S+K+ +E++ + +I
Sbjct: 132 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 181
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTL---EIQGKRVKLQIWD 73
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K++++GD++VGKT VQ F F + +T+GVDF+ K L
Sbjct: 18 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTL 60
>gi|429962854|gb|ELA42398.1| small GTP-binding protein domain protein [Vittaforma corneae ATCC
50505]
Length = 211
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 115/194 (59%), Gaps = 16/194 (8%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I+I GD+ VGKT+ + V+++F+++ K+T+GVDF+TK K+G +K+Q+WD A
Sbjct: 13 FKIVIIGDANVGKTNIISRLVRDEFIEHSKSTIGVDFATKTF---KFGSSSIKVQLWDTA 69
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFE-SVVQWKHDLDSKCILDNGAMLPCLLLA 359
GQ+RY + YY+ S G +I++D+TN+ SFE S W ++L+S +P +LL
Sbjct: 70 GQERYHALISAYYRGSSGAVIVYDVTNKPSFEHSYTSWLNNLESST----KESIPKMLLG 125
Query: 360 SKCDLPDRQVEINEI--EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
+K DL D QVE++ E + N M++ E S+ ++ D+++ + I +E
Sbjct: 126 NKIDLRD-QVEVSRADGERAALERN-MAFFETSA----LLGDNIHIAFESFIKKIFEKET 179
Query: 418 AVERKSSIRLSEET 431
E SS +L +E+
Sbjct: 180 TKEIASSKKLLDES 193
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 42/58 (72%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I+I GD+ VGKT+ + V+++F+++ K+T+GVDF+TK K+G +K+Q+WD
Sbjct: 13 FKIVIIGDANVGKTNIISRLVRDEFIEHSKSTIGVDFATKTF---KFGSSSIKVQLWD 67
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 37/49 (75%), Gaps = 3/49 (6%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG 156
+ KI++IGD+ VGKT+ + V+++F+++ K+T+GVDF+TK K+G
Sbjct: 12 LFKIVIIGDANVGKTNIISRLVRDEFIEHSKSTIGVDFATKTF---KFG 57
>gi|444728384|gb|ELW68842.1| Ras-related protein Rab-19 [Tupaia chinensis]
Length = 217
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 98/170 (57%), Gaps = 8/170 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L + G+ VK+Q+WD A
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSL---EISGKRVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT +FESV W H+++ A L +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRHSTFESVPHWIHEIEKY----GAANLVIMLIGN 130
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL + R V + + ++ ++ +E S+KE I++ + +I
Sbjct: 131 KCDLWEKRHVLFEDACTLAEKHGLLAVVETSAKESRNIDEVFVLMAKELI 180
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L + G+ VK+Q+WD
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSL---EISGKRVKMQVWD 72
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGDS VGKT VQ F + + +NT+GVDF+ + L
Sbjct: 17 LFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSL 59
>gi|29841146|gb|AAP06159.1| similar to NM_078963 GTP-binding protein rab3A in Drosophila
melanogaster [Schistosoma japonicum]
gi|226480624|emb|CAX73409.1| Rab-protein 8 [Schistosoma japonicum]
Length = 216
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 103/173 (59%), Gaps = 10/173 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD A
Sbjct: 16 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTIFRQD---KRVKLQIWDTA 72
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN +L+ +
Sbjct: 73 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWVTQIKTYS-WDNA---QVVLVGN 128
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCDL DR V ++ + HQ + + E S+KE++ +++ LVD IIC K
Sbjct: 129 KCDLVDDRVVSVDRGRHLAHQLG-LEFFEASAKENINVKNVFERLVD-IICDK 179
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD
Sbjct: 16 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTIFRQD---KRVKLQIWD 70
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 15 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTI 57
>gi|440297920|gb|ELP90561.1| rab17, putative [Entamoeba invadens IP1]
Length = 209
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 99/162 (61%), Gaps = 7/162 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ G+ VGKTS ++ + F Y+ T+GVDF+ K+ + + V+L++WDIAGQ
Sbjct: 12 IIVIGEPNVGKTSTIRKYCHGVFDQLYRPTIGVDFAVKMTT---VDDKDVELRLWDIAGQ 68
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
++YI M+RVYY + G IIM+DLTN ++F + +WK DL++K N +P LL+ +K
Sbjct: 69 EKYIAMTRVYYNGAHGAIIMYDLTNPETFNATDRWKDDLENKVKF-NEQSIPALLVGNKA 127
Query: 363 D-LPDRQVEINE--IEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
D L + +++ E + A + + I S+K L +E++M
Sbjct: 128 DALTEAELKRAEEDLRAKVDEQKYADGILTSAKSGLAVEEAM 169
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
+T I++ G+ VGKTS ++ + F Y+ T+GVDF+ K+ + + V+L++
Sbjct: 6 ETLQLKIIVIGEPNVGKTSTIRKYCHGVFDQLYRPTIGVDFAVKMTT---VDDKDVELRL 62
Query: 227 WDI 229
WDI
Sbjct: 63 WDI 65
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
LKI+VIG+ VGKTS ++ + F Y+ T+GVDF+ K+
Sbjct: 10 LKIIVIGEPNVGKTSTIRKYCHGVFDQLYRPTIGVDFAVKM 50
>gi|260822457|ref|XP_002606618.1| hypothetical protein BRAFLDRAFT_209603 [Branchiostoma floridae]
gi|229291962|gb|EEN62628.1| hypothetical protein BRAFLDRAFT_209603 [Branchiostoma floridae]
Length = 144
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 82/125 (65%), Gaps = 2/125 (1%)
Query: 268 NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTN 327
NYK T+GVDF+ K L + + LQ+WDIAG +R+ M+RVYY+ + II+FDL+
Sbjct: 4 NYKLTIGVDFALKSLDWDE--QTKINLQLWDIAGHERFGHMTRVYYKYAIAAIIVFDLSR 61
Query: 328 RKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWI 387
+FESV++W +D++ K +L + +P +LLA+KCD+ D + + +E C Q+ F+ W
Sbjct: 62 PTTFESVLKWYNDVNEKVMLADQQPIPVILLANKCDIDDSTFDKSSLEEFCKQHKFIGWF 121
Query: 388 EVSSK 392
E S+K
Sbjct: 122 ETSAK 126
>gi|196008661|ref|XP_002114196.1| hypothetical protein TRIADDRAFT_58410 [Trichoplax adhaerens]
gi|190583215|gb|EDV23286.1| hypothetical protein TRIADDRAFT_58410 [Trichoplax adhaerens]
Length = 243
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 111/198 (56%), Gaps = 5/198 (2%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
++ +I G + GK+S ++ +V F D YK T+GVDF+ K+++ +KLQ+WD+
Sbjct: 40 SFKFIIVGKNHTGKSSIIRRYVDGLFTDYYKITMGVDFALKVINWD--AKTTIKLQLWDV 97
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
GQD M+ VY++++ G +++D+T+ K+FES WK D+D K L +G +P +LLA
Sbjct: 98 QGQDFNEKMTHVYFKDAVGAFVVYDVTDVKTFESTKMWKEDIDKKVFLPDGCKIPVVLLA 157
Query: 360 SKCDLPD--RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII-CSKRMEE 416
+KCD ++ ++ W E S+K + I+ + LV+ + S + ++
Sbjct: 158 NKCDKAKVGNHNSPEYLDNYIQDNGYIKWFETSAKTGINIDKAFRSLVEEVYESSDKSDK 217
Query: 417 EAVERKSSIRLSEETLRD 434
+ +I+L++ + +D
Sbjct: 218 KETTDTENIKLNDTSEKD 235
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 164 SPIQTP--SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 221
+P++T S+ +I G + GK+S ++ +V F D YK T+GVDF+ K+++
Sbjct: 32 NPVETKEHSFKFIIVGKNHTGKSSIIRRYVDGLFTDYYKITMGVDFALKVINWD--AKTT 89
Query: 222 VKLQIWDI 229
+KLQ+WD+
Sbjct: 90 IKLQLWDV 97
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E K +++G + GK+S ++ +V F D YK T+GVDF+ K+++
Sbjct: 38 EHSFKFIIVGKNHTGKSSIIRRYVDGLFTDYYKITMGVDFALKVIN 83
>gi|227603|prf||1707300A guanine nucleotide binding protein
Length = 208
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 120/201 (59%), Gaps = 11/201 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS+VGK+ ++ F + ++D+Y +T+GVDF + + + G+ VKLQIWD A
Sbjct: 9 FKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVE---GKTVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G II++D+T+ +SF +V QW ++D + +L+ +
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYA----NDSVRNVLVGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL + R V+ + +A + + ++E S+KE + +E++ + I SK + A+
Sbjct: 122 KCDLAENRAVDTSVAQAYAQEVG-IPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAAL 180
Query: 420 ERKSS--IRLSEETLRDDQPK 438
ERK S +++ ++ +Q K
Sbjct: 181 ERKPSNVVQMKGRPIQQEQQK 201
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 40/58 (68%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS+VGK+ ++ F + ++D+Y +T+GVDF + + + G+ VKLQIWD
Sbjct: 9 FKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVE---GKTVKLQIWD 63
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 32/43 (74%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS+VGK+ ++ F + ++D+Y +T+GVDF + +
Sbjct: 8 LFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTV 50
>gi|62955495|ref|NP_001017761.1| ras-related protein Rab-3A [Danio rerio]
gi|62203410|gb|AAH93355.1| Si:ch211-255d18.4 [Danio rerio]
gi|182890120|gb|AAI64318.1| Si:ch211-255d18.4 protein [Danio rerio]
Length = 220
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 102/175 (58%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFAAVQDWSTQIKTYS-WDNAQV---LLVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E ++ + E S+K+++ ++ + LVD IIC K E
Sbjct: 136 KCDMEDERVVASERGRQLSEHLGFEYFEASAKDNINVKQTFERLVD-IICEKMSE 189
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 77
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 13 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 64
>gi|344275963|ref|XP_003409780.1| PREDICTED: ras-related protein Rab-43-like [Loxodonta africana]
Length = 212
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 99/162 (61%), Gaps = 8/162 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F + NT+GVDF+ K L + G+ VKLQIWD A
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGNTIGVDFTMKTLEIQ---GKRVKLQIWDTA 75
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D+T R SF SV W D+ G+ + LL+ +
Sbjct: 76 GQERFRTITQSYYRSANGAILAYDITKRSSFLSVPNWIEDVRKYA----GSNIVQLLIGN 131
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL + R+V + E +++ Y+ + IE S+K+ +E++
Sbjct: 132 KSDLGELREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 173
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD++VGKT VQ F F + NT+GVDF+ K L + G+ VKLQIWD
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGNTIGVDFTMKTLEIQ---GKRVKLQIWD 73
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K++++GD++VGKT VQ F F + NT+GVDF+ K L
Sbjct: 18 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGNTIGVDFTMKTL 60
>gi|395513171|ref|XP_003760803.1| PREDICTED: ras-related protein Rab-3A [Sarcophilus harrisii]
Length = 359
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 103/175 (58%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 162 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNE---KRIKLQIWDTA 218
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 219 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 274
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E ++ + E S+K+++ ++ + LVD IIC K E
Sbjct: 275 KCDMEDERVVSSERGRQLAEHLGFEFFEASAKDNINVKQTFERLVD-IICEKMSE 328
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 162 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNE---KRIKLQIWD 216
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 161 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 203
>gi|407041312|gb|EKE40659.1| Rab family GTPase, partial [Entamoeba nuttalli P19]
Length = 208
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 99/162 (61%), Gaps = 7/162 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ G+ +VGKTS ++ + F Y+ T+GVDF+ K + + R V+L++WDIAGQ
Sbjct: 11 IIVIGEPSVGKTSTIRKYCHGVFDQLYRATIGVDFAVKFTTVDE---RDVELRLWDIAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
++YI M+RVYY + G IIM+DLTN +F + +WK DL++K N +P LL+ +K
Sbjct: 68 EKYIAMTRVYYNGAHGAIIMYDLTNPDTFAATDRWKEDLENKVKF-NEQSIPALLVGNKA 126
Query: 363 D-LPDRQVE--INEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
D L + +++ ++ A + + I S+K L +E++M
Sbjct: 127 DCLSEEELKKAQEDLMAKVAEQKYSDGILTSAKSGLAVEEAM 168
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
I++ G+ +VGKTS ++ + F Y+ T+GVDF+ K + + R V+L++WDI
Sbjct: 11 IIVIGEPSVGKTSTIRKYCHGVFDQLYRATIGVDFAVKFTTVDE---RDVELRLWDI 64
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
LKI+VIG+ +VGKTS ++ + F Y+ T+GVDF+ K
Sbjct: 9 LKIIVIGEPSVGKTSTIRKYCHGVFDQLYRATIGVDFAVKF 49
>gi|313218156|emb|CBY41456.1| unnamed protein product [Oikopleura dioica]
gi|313222707|emb|CBY41703.1| unnamed protein product [Oikopleura dioica]
Length = 203
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 102/170 (60%), Gaps = 10/170 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ GDS VGK+S + + + F + Y T+GVDF K + K G+ + LQ+WD AGQ
Sbjct: 9 LLLVGDSGVGKSSILIRYTDDTFTEKYTGTIGVDFKLKKIFRK---GQEINLQLWDTAGQ 65
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + R +Y+ ++G +++FD+ +R SFE++ +W ++ C +P +L+ +K
Sbjct: 66 ERFKSLVRSFYKGANGVVVVFDIGSRSSFEALRRWMSEIQGNC-----DEIPRILVGNKV 120
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
D P R V E + + +Y + +IE S+K ++ I+++ + L D+I+ +
Sbjct: 121 DGP-RSVTKAEAQEIASKYG-LQYIETSAKTNVGIDETFDKLTDQIMVRR 168
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+L+ GDS VGK+S + + + F + Y T+GVDF K + K G+ + LQ+WD
Sbjct: 9 LLLVGDSGVGKSSILIRYTDDTFTEKYTGTIGVDFKLKKIFRK---GQEINLQLWD 61
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 105 AETVL-KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 153
AE L K+L++GDS VGK+S + + + F + Y T+GVDF K + K
Sbjct: 2 AEKALCKLLLVGDSGVGKSSILIRYTDDTFTEKYTGTIGVDFKLKKIFRK 51
>gi|313227767|emb|CBY22916.1| unnamed protein product [Oikopleura dioica]
Length = 203
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 102/170 (60%), Gaps = 10/170 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ GDS VGK+S + + + F + Y T+GVDF K + K G+ + LQ+WD AGQ
Sbjct: 9 LLLVGDSGVGKSSILIRYTDDTFTEKYTGTIGVDFKLKKIFRK---GQEINLQLWDTAGQ 65
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + R +Y+ ++G +++FD+ +R SFE++ +W ++ C +P +L+ +K
Sbjct: 66 ERFKSLVRSFYKGANGVVVVFDIGSRSSFEALRRWMSEIQGNC-----DEIPRILVGNKV 120
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
D P R V E + + +Y + +IE S+K ++ I+++ + L D+I+ +
Sbjct: 121 DGP-RSVTKAEAQEIASKYG-LQYIETSAKTNVGIDETFDKLTDQIMVRR 168
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+L+ GDS VGK+S + + + F + Y T+GVDF K + K G+ + LQ+WD
Sbjct: 9 LLLVGDSGVGKSSILIRYTDDTFTEKYTGTIGVDFKLKKIFRK---GQEINLQLWD 61
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 105 AETVL-KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 153
AE L K+L++GDS VGK+S + + + F + Y T+GVDF K + K
Sbjct: 2 AEKALCKLLLVGDSGVGKSSILIRYTDDTFTEKYTGTIGVDFKLKKIFRK 51
>gi|187607630|ref|NP_001119836.1| ras-related protein Rab-7a [Ovis aries]
gi|184191121|gb|ACC76773.1| RAS oncogene family-like 7A [Ovis aries]
gi|385281368|gb|AFI57836.1| ras-related protein Rab-7A [Capra hircus]
Length = 207
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 106/196 (54%), Gaps = 7/196 (3%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL +RQV +A C+ N + + E S+KE + +E + + + + E E
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFP 187
Query: 423 SSIRLSEETLRDDQPK 438
I+L ++D+PK
Sbjct: 188 EPIKLD----KNDRPK 199
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|432105575|gb|ELK31772.1| Ras-related protein Rab-3C [Myotis davidii]
Length = 219
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 110/195 (56%), Gaps = 15/195 (7%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN +L+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNGESFNAVQDWSTQIKTYS-WDNA---QVILVGN 135
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR-----M 414
KCD+ D R V + + + Q F + E S+K+++ ++ + LVD +IC K
Sbjct: 136 KCDMEDERVVSVERGQHLGEQLGF-EFFETSAKDNINVKQTFERLVD-VICDKMSESVDT 193
Query: 415 EEEAVERKSSIRLSE 429
E+ A K S RL E
Sbjct: 194 EQAATAAKQSARLKE 208
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 77
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 64
>gi|440797100|gb|ELR18195.1| rasrelated protein Rab-18-like, putative [Acanthamoeba castellanii
str. Neff]
Length = 209
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS+VGK+S + F +++F D + T+GVDF K + + G + + L IWD A
Sbjct: 15 FKLLIIGDSSVGKSSILLRFTEDEFDDEHPVTIGVDFKVKTI---QLGAKRINLTIWDTA 71
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+++ ++ YY+ + G I+++D+++R+SF+ + W ++++ C N + + LL+A+
Sbjct: 72 GQEKFRSLTSSYYRGTQGIILVYDVSSRESFQHLSVWLNEIEMYC---NNSDVVKLLVAN 128
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
K DL DRQV E A + M +IE S+K L I+ + LV +I+ + + E+ +
Sbjct: 129 KIDLGDRQVSREEGLAFA-KSKAMVFIECSAKTKLGIQQAFEELVTKILETPSLYEKETK 187
Query: 421 RKSSIRLSEET 431
++ +++++
Sbjct: 188 ATGTVSMNQDS 198
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS+VGK+S + F +++F D + T+GVDF K + + G + + L IWD
Sbjct: 15 FKLLIIGDSSVGKSSILLRFTEDEFDDEHPVTIGVDFKVKTI---QLGAKRINLTIWD 69
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 97 GFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
G S + + K+L+IGDS+VGK+S + F +++F D + T+GVDF K +
Sbjct: 3 GTTGSASHFDHLFKLLIIGDSSVGKSSILLRFTEDEFDDEHPVTIGVDFKVKTI 56
>gi|67481145|ref|XP_655922.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56473090|gb|EAL50536.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56790126|dbj|BAD82859.1| small GTPase EhRabX11 [Entamoeba histolytica]
Length = 209
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 99/162 (61%), Gaps = 7/162 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ G+ +VGKTS ++ + F Y+ T+GVDF+ K + + R V+L++WDIAGQ
Sbjct: 12 IIVIGEPSVGKTSTIRKYCHGVFDQLYRATIGVDFAVKFTTVDE---RDVELRLWDIAGQ 68
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
++YI M+RVYY + G IIM+DLTN +F + +WK DL++K N +P LL+ +K
Sbjct: 69 EKYIAMTRVYYNGAHGAIIMYDLTNPDTFAATDRWKEDLENKVKF-NEQSIPALLVGNKA 127
Query: 363 D-LPDRQVE--INEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
D L + +++ ++ A + + I S+K L +E++M
Sbjct: 128 DCLSEEELKKAQEDLMAKVAEQKYSDGILTSAKSGLAVEEAM 169
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
I++ G+ +VGKTS ++ + F Y+ T+GVDF+ K + + R V+L++WDI
Sbjct: 12 IIVIGEPSVGKTSTIRKYCHGVFDQLYRATIGVDFAVKFTTVDE---RDVELRLWDI 65
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
LKI+VIG+ +VGKTS ++ + F Y+ T+GVDF+ K
Sbjct: 10 LKIIVIGEPSVGKTSTIRKYCHGVFDQLYRATIGVDFAVKF 50
>gi|440799686|gb|ELR20730.1| Ras family protein [Acanthamoeba castellanii str. Neff]
Length = 219
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 256 YVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQN 315
Y +G+ F NYK T+GVDF+ K + V LQ D+AG +R+ M+RVYY+
Sbjct: 27 YCEGY----FTPNYKLTIGVDFAVKQVQWDD--KTTVSLQ--DVAGHERFGQMTRVYYKY 78
Query: 316 SDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIE 375
+ II+FDL+ +FE+V +W+ D+ SK +L N +P LLLA+KCD+P V+ ++
Sbjct: 79 AIAAIIVFDLSRPATFEAVAKWREDVHSKVMLANDQPIPILLLANKCDIPGVTVDTEALD 138
Query: 376 AVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERKSSIRLSEET 431
F+ W S+ + I+D+M F++++++ + + + ++ L E+
Sbjct: 139 KYSQDNGFVGWFPSSAANNTNIDDAMKFMIEKVLEVAKTNQVPTPQTDTLSLEAES 194
>gi|1050551|emb|CAA61797.1| rab7 [Mus musculus]
Length = 207
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 93/159 (58%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C++ N + + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWCYRKNNIPYFETSAKEAINVEQAF 166
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|4105819|gb|AAD02565.1| Rab7 [Homo sapiens]
Length = 207
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 97/175 (55%), Gaps = 4/175 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF L+ R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF---LIKEVMVDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
DL +RQV +A C+ N + + E S+KE + +E + + R + EEE
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQ-TIARNALKQETEEE 181
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF L+ R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF---LIKEVMVDDRLVTMQIWD 63
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF K
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLIK 48
>gi|60729663|pir||JC8006 Rab7 protein - sea anemone (Aiptasia pulchella)
gi|33621866|gb|AAQ23388.1| Rab7 [Aiptasia pulchella]
Length = 205
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 101/188 (53%), Gaps = 3/188 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTQPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL +R V +A CH N + + E S+KE + +E + + + + E +
Sbjct: 128 DLENRAVSAKRAQAWCHSKNNIPYFETSAKEAINVEQAFQTIAKNALAQETDVELYNDFP 187
Query: 423 SSIRLSEE 430
I+LS E
Sbjct: 188 DQIKLSGE 195
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|62857817|ref|NP_001017246.1| ras-related protein Rab-19 [Xenopus (Silurana) tropicalis]
gi|123893500|sp|Q28IZ3.1|RAB19_XENTR RecName: Full=Ras-related protein Rab-19
gi|89268291|emb|CAJ82446.1| RAB19, member RAS oncogene family [Xenopus (Silurana) tropicalis]
Length = 213
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 110/201 (54%), Gaps = 9/201 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT V F F N +NT+GVDF+ + ++ G+ VK+Q+WD A
Sbjct: 16 FKIILIGDSNVGKTCVVHRFQSGVFAHNQQNTIGVDFTVRNMN---INGKKVKVQVWDTA 72
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ G II +D+T R+SFESV W ++ + A L +L+ +
Sbjct: 73 GQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAEKY----GAANLMMMLIGN 128
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K DL + RQ+ E + ++ ++ +E S+KE +++ + +I +
Sbjct: 129 KSDLAEKRQILFEEACTLAEKHGLLAVLETSAKESHNVDEVFLLMAKELIARNTFHYHSE 188
Query: 420 ERKSSIRL-SEETLRDDQPKK 439
++S L S+ L +P K
Sbjct: 189 SPRNSFMLDSKPVLAPPEPDK 209
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT V F F N +NT+GVDF+ + ++ G+ VK+Q+WD
Sbjct: 16 FKIILIGDSNVGKTCVVHRFQSGVFAHNQQNTIGVDFTVRNMN---INGKKVKVQVWD 70
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ KI++IGDS VGKT V F F N +NT+GVDF+ +
Sbjct: 15 LFKIILIGDSNVGKTCVVHRFQSGVFAHNQQNTIGVDFTVR 55
>gi|1174149|gb|AAA86640.1| small GTP binding protein Rab7 [Homo sapiens]
Length = 207
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLVQASPRDPENFPFVVLGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|66730270|ref|NP_001019497.1| ras-related protein Rab-19 [Rattus norvegicus]
gi|81889125|sp|Q5M7U5.1|RAB19_RAT RecName: Full=Ras-related protein Rab-19
gi|56789734|gb|AAH88443.1| RAB19, member RAS oncogene family [Rattus norvegicus]
gi|149065308|gb|EDM15384.1| similar to RAB19, member RAS oncogene family [Rattus norvegicus]
Length = 217
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 118/220 (53%), Gaps = 28/220 (12%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GDS VGKT VQ F + ++ +NT+GVDF+ + L + G+ VK+Q+WD A
Sbjct: 18 FKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSL---EIDGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT R +FESV W H+++ A L +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKY----GAANLVIMLIGN 130
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K DL + R V + + +Y ++ +E S+KE I++ + +I
Sbjct: 131 KSDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESRNIDEVFVLMAKELIA--------- 181
Query: 420 ERKSSIRLSEETLRDDQPK-------KLVPADKVSTYCWC 452
++S+ L E+ + P+ VP+++ T+C C
Sbjct: 182 --RNSLHLYGESAQQGLPQDSSPVLVAHVPSER--THCTC 217
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDS VGKT VQ F + ++ +NT+GVDF+ + L + G+ VK+Q+WD
Sbjct: 18 FKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSL---EIDGKKVKMQVWD 72
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ + + K+++IGDS VGKT VQ F + ++ +NT+GVDF+ + L
Sbjct: 13 NVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSL 59
>gi|432860022|ref|XP_004069352.1| PREDICTED: ras-related protein Rab-7a-like isoform 1 [Oryzias
latipes]
gi|432860024|ref|XP_004069353.1| PREDICTED: ras-related protein Rab-7a-like isoform 2 [Oryzias
latipes]
Length = 206
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C N + + E S+KE + +E +
Sbjct: 128 DLENRQVTTKRAQAWCQSKNNIPYFETSAKEAINVEQAF 166
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|301108157|ref|XP_002903160.1| Rab32/38 family GTPase, putative [Phytophthora infestans T30-4]
gi|262097532|gb|EEY55584.1| Rab32/38 family GTPase, putative [Phytophthora infestans T30-4]
Length = 220
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 108/180 (60%), Gaps = 7/180 (3%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+LI G++ GKTS ++ F Q+ F + Y +T+G DF K++++ + + LQ+WDIAGQ
Sbjct: 3 VLIVGNARCGKTSTIRRFTQDDFNEEYVSTIGADFVEKIIAYDEQ--LTISLQLWDIAGQ 60
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCI-LDNGAMLPCLLLASK 361
DR+ +R Y++ + G +I+ D+T + ++VV WK+++D+ C L+ GA +P +++A+K
Sbjct: 61 DRFAKFTRGYFREARGAVIVCDITRANTIDAVVNWKNEIDTCCKDLNEGAEIPVVMVANK 120
Query: 362 CDL---PDRQVEIN-EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
DL P +++ ++ + N + W S+K I D+ L++R++ R E+
Sbjct: 121 SDLLLDPMGALDLGVNMQKCVDKNNIVEWFRASAKSGERIGDAFQCLINRMVNDYRNGED 180
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+LI G++ GKTS ++ F Q+ F + Y +T+G DF K++++ + + LQ+WDI
Sbjct: 3 VLIVGNARCGKTSTIRRFTQDDFNEEYVSTIGADFVEKIIAYDEQ--LTISLQLWDI 57
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 32/44 (72%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152
+K+L++G++ GKTS ++ F Q+ F + Y +T+G DF K++++
Sbjct: 1 MKVLIVGNARCGKTSTIRRFTQDDFNEEYVSTIGADFVEKIIAY 44
>gi|189502804|gb|ACE06783.1| unknown [Schistosoma japonicum]
Length = 248
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 104/173 (60%), Gaps = 10/173 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD A
Sbjct: 57 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTIFRQD---KRVKLQIWDTA 113
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 114 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWVTQIKTYS-WDNAQV---VLVGN 169
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCDL DR V ++ + HQ + + E S+KE++ +++ LVD IIC K
Sbjct: 170 KCDLVDDRVVSVDRGRHLAHQLG-LEFFEASAKENINVKNVFERLVD-IICDK 220
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD
Sbjct: 57 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTIFRQD---KRVKLQIWD 111
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 56 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTI 98
>gi|444512842|gb|ELV10184.1| Ras-related protein Rab-43 [Tupaia chinensis]
Length = 212
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 99/162 (61%), Gaps = 8/162 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFAERQGSTIGVDFTMKTLDVQ---GKRVKLQIWDTA 75
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ G I+ +D+T R SF SV +W D+ G+ + LL+ +
Sbjct: 76 GQERFRTITQSYYRSASGAILAYDITKRGSFLSVPRWIEDVRKYA----GSGIVQLLIGN 131
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL + R+V + E +++ Y+ + IE S+K+ +E++
Sbjct: 132 KSDLGELREVTLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 173
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFAERQGSTIGVDFTMKTLDVQ---GKRVKLQIWD 73
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 100 PRPSDAET----VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P P DA+ + K++++GD++VGKT VQ F F + +T+GVDF+ K L
Sbjct: 6 PVPGDADQQYDFLFKLVLVGDASVGKTCVVQRFKTGAFAERQGSTIGVDFTMKTL 60
>gi|344275957|ref|XP_003409777.1| PREDICTED: ras-related protein Rab-7a-like [Loxodonta africana]
Length = 207
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|126323469|ref|XP_001362786.1| PREDICTED: ras-related protein Rab-3A-like [Monodelphis domestica]
Length = 220
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 103/175 (58%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNE---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E ++ + E S+K+++ ++ + LVD IIC K E
Sbjct: 136 KCDMEDERVVSSERGRQLAEHLGFEFFEASAKDNINVKQTFERLVD-IICEKMSE 189
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNE---KRIKLQIWD 77
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 13 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 64
>gi|391338858|ref|XP_003743772.1| PREDICTED: ras-related protein Rab-8A-like [Metaseiulus
occidentalis]
Length = 210
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 106/181 (58%), Gaps = 10/181 (5%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
T+ IL+ GDS VGKT V F +F D Y +T+G+DF K+++ G PVKLQIWD
Sbjct: 11 TFKILVLGDSNVGKTCIVHRFCDERFYDTYISTIGIDFKQKIIN---LDGTPVKLQIWDT 67
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ ++ YY+ + G +IM+D+TN SF + W +++ D + +L+
Sbjct: 68 AGQERFRTLTTAYYRGAMGILIMYDVTNMDSFNHLTYWFRNVEENASPD----VVKVLVG 123
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
+KCD RQVE +++ + Q + ++ E S K+++ I++ L R+I ++ E+E
Sbjct: 124 NKCDATSQRQVEASQLAKMAEQLD-IAHFECSCKQNINIQEVFITLA-RLIQKQKEEKEK 181
Query: 419 V 419
+
Sbjct: 182 L 182
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 168 TPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 227
+ ++ IL+ GDS VGKT V F +F D Y +T+G+DF K+++ G PVKLQIW
Sbjct: 9 SGTFKILVLGDSNVGKTCIVHRFCDERFYDTYISTIGIDFKQKIIN---LDGTPVKLQIW 65
Query: 228 D 228
D
Sbjct: 66 D 66
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
KILV+GDS VGKT V F +F D Y +T+G+DF K+++
Sbjct: 12 FKILVLGDSNVGKTCIVHRFCDERFYDTYISTIGIDFKQKIIN 54
>gi|385301293|gb|EIF45495.1| gtpase rab7 [Dekkera bruxellensis AWRI1499]
Length = 205
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 104/176 (59%), Gaps = 8/176 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS +Q F+ KF YK T+G DF K ++ + V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMQQFINGKFSQQYKATIGADFLPKDMN---IDDKQVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ SD C+++FD+TN KSFE++ W+ + + + + P +++ +K
Sbjct: 68 ERFQSLGVAFYRGSDCCVLVFDVTNSKSFENLQNWRDEFLIQANIKDPDSFPFVVIGNKI 127
Query: 363 DLPD--RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
D+ + R V + + +A+C + + E S+KE + +E + + +V R C+ + EE
Sbjct: 128 DVDESKRVVSVKKAQALCASLGNIPYFETSAKEAVNVEQAFD-VVAR--CALQQEE 180
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
+T+LK++++GDS VGKTS +Q F+ KF YK T+G DF
Sbjct: 6 KTILKVIILGDSGVGKTSLMQQFINGKFSQQYKATIGADF 45
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS +Q F+ KF YK T+G DF K ++ + V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMQQFINGKFSQQYKATIGADFLPKDMN---IDDKQVTMQIWD 63
>gi|348551446|ref|XP_003461541.1| PREDICTED: ras-related protein Rab-7a-like [Cavia porcellus]
Length = 207
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|449279549|gb|EMC87121.1| Ras-related protein Rab-3A, partial [Columba livia]
Length = 214
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 102/175 (58%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E ++ + E S+K+++ ++ + LVD IIC K E
Sbjct: 136 KCDMEDERVVSSEKGRQLAEHLGFEFFEASAKDNINVKQTFERLVD-IICEKMSE 189
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 77
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 13 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 64
>gi|149728225|ref|XP_001488351.1| PREDICTED: ras-related protein Rab-7a-like [Equus caballus]
Length = 207
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|387017950|gb|AFJ51093.1| ras-related protein Rab-13-like [Crotalus adamanteus]
Length = 200
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 103/171 (60%), Gaps = 11/171 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F ++ F Y +T+G+DF + + + G+ +KLQ+WD A
Sbjct: 9 FKLLLIGDSGVGKTCLIIRFSEDSFSGTYISTIGIDFKIRTVEVE---GKRIKLQVWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNG-AMLPCLLLA 359
GQ+R+ ++ YY+ + G I+++D+T+ KSFE++ W K I +N A + LLL
Sbjct: 66 GQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNW-----MKSIKENASAGVERLLLG 120
Query: 360 SKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+KCD+ R+V ++ E +C ++ + + E S+K L +E++ N L I+
Sbjct: 121 NKCDMEVKRKVSRDQAEKLCREHG-IRFFETSAKSSLNVEEAFNTLARDIL 170
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F ++ F Y +T+G+DF + + + G+ +KLQ+WD
Sbjct: 9 FKLLLIGDSGVGKTCLIIRFSEDSFSGTYISTIGIDFKIRTV---EVEGKRIKLQVWD 63
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS VGKT + F ++ F Y +T+G+DF +
Sbjct: 8 LFKLLLIGDSGVGKTCLIIRFSEDSFSGTYISTIGIDFKIR 48
>gi|449458327|ref|XP_004146899.1| PREDICTED: ras-related protein RABD2a-like [Cucumis sativus]
gi|449519234|ref|XP_004166640.1| PREDICTED: ras-related protein RABD2a-like [Cucumis sativus]
Length = 201
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 98/161 (60%), Gaps = 8/161 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGK+ + F + +LD+Y +T+GVDF + + G+ +KLQIWD A
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQD---GKTIKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G II++D+T+++SFE+V QW +++D + LL+ +
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYA----SENVNKLLVGN 121
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
KCDLP+R V +A + + ++E S+K+ +E +
Sbjct: 122 KCDLPNRAVSYESAKAFADEVG-IPFMETSAKDATNVEQAF 161
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGK+ + F + +LD+Y +T+GVDF + + G+ +KLQIWD
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQD---GKTIKLQIWD 63
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152
+ K+L+IGDS VGK+ + F + +LD+Y +T+GVDF + +
Sbjct: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQ 52
>gi|296474622|tpg|DAA16737.1| TPA: ras-related protein Rab-7a [Bos taurus]
gi|440895046|gb|ELR47337.1| Ras-related protein Rab-7a [Bos grunniens mutus]
Length = 207
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|320168875|gb|EFW45774.1| ras family protein [Capsaspora owczarzaki ATCC 30864]
Length = 206
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 107/197 (54%), Gaps = 9/197 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + + V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDKLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++ FD+T K+FE++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLCFDVTTPKTFETLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV--- 419
DL +R V +A C Q N + + E S+KE + +E + + + + E EAV
Sbjct: 128 DLENRAVSDKRAKAWCGQKNNIPYFETSAKESINVEQAFQTIAKNAL---QQESEAVLYN 184
Query: 420 ERKSSIRLSEETLRDDQ 436
E I+++ +T D+
Sbjct: 185 EFPDPIKITGDTAGGDK 201
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + + V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDKLVTMQIWD 63
>gi|156357542|ref|XP_001624276.1| predicted protein [Nematostella vectensis]
gi|156211042|gb|EDO32176.1| predicted protein [Nematostella vectensis]
Length = 224
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 107/184 (58%), Gaps = 9/184 (4%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+ P + I++ GDSTVGK+S ++ F + +F +N TVGVDF ++L K G +
Sbjct: 1 MKPKYFYQFRIILIGDSTVGKSSLLRQFTEGQFFENSDPTVGVDFHVRVLELK--GDVRI 58
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
KLQIWD AGQ+R+ ++ YY+N+ GC+I++D+TNR SF +V+ W + +C+ + A
Sbjct: 59 KLQIWDTAGQERFRSITYSYYRNTVGCLIIYDITNRDSFVNVMDWYKEA-KQCVEE--AE 115
Query: 353 LPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
+ +L+ K D R V E E +N M +IE S+K IE++ + + +
Sbjct: 116 VVFMLVGHKIDKESKRVVSTEEGECFAEAHNMM-FIETSAKVLCNIEEAFISVAEEVY-- 172
Query: 412 KRME 415
KRME
Sbjct: 173 KRME 176
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 153
+I++IGDSTVGK+S ++ F + +F +N TVGVDF ++L K
Sbjct: 9 FRIILIGDSTVGKSSLLRQFTEGQFFENSDPTVGVDFHVRVLELK 53
>gi|91077598|ref|XP_973418.1| PREDICTED: similar to RabX4 CG31118-PA [Tribolium castaneum]
gi|270002179|gb|EEZ98626.1| hypothetical protein TcasGA2_TC001149 [Tribolium castaneum]
Length = 220
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 98/170 (57%), Gaps = 8/170 (4%)
Query: 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
TY IL+ GDS VGKT V F ++ D Y +T+G+DF K+++ G P+KLQIWD
Sbjct: 7 ATYKILVLGDSNVGKTCIVHRFCDERYYDTYISTIGIDFKQKIVN---LDGVPIKLQIWD 63
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
AGQ+R+ ++ YY+ + G ++++D+TN +SF + W +++ + + +L
Sbjct: 64 TAGQERFRTLTTAYYRGAMGILLLYDVTNLESFNHITYWLQNIEE----NASPHVITVLA 119
Query: 359 ASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+KC+ DR V+ + + ++ ++ EVS K+++ IE S L +I
Sbjct: 120 GNKCESADRIVDAESGQKIAEHFD-LTHFEVSCKDNVNIEASFMTLARKI 168
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+Y IL+ GDS VGKT V F ++ D Y +T+G+DF K+++ G P+KLQIWD
Sbjct: 7 ATYKILVLGDSNVGKTCIVHRFCDERYYDTYISTIGIDFKQKIVN---LDGVPIKLQIWD 63
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
D KILV+GDS VGKT V F ++ D Y +T+G+DF K+++
Sbjct: 4 DFAATYKILVLGDSNVGKTCIVHRFCDERYYDTYISTIGIDFKQKIVN 51
>gi|13027392|ref|NP_076440.1| ras-related protein Rab-7a [Rattus norvegicus]
gi|1710001|sp|P09527.2|RAB7A_RAT RecName: Full=Ras-related protein Rab-7a; AltName: Full=Ras-related
protein BRL-RAS; AltName: Full=Ras-related protein p23
gi|51247924|pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
gi|51247926|pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
gi|51247927|pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
gi|51247928|pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
gi|51247929|pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
gi|9837359|gb|AAG00543.1|AF286535_1 GTP-binding protein RAB7 [Rattus norvegicus]
gi|505565|emb|CAA31053.1| unnamed protein product [Rattus rattus]
gi|47938948|gb|AAH72470.1| RAB7A, member RAS oncogene family [Rattus norvegicus]
gi|71891601|dbj|BAE16999.1| RAB7 [Rattus norvegicus]
gi|71891603|dbj|BAE17000.1| RAB7 [Rattus norvegicus]
gi|149036684|gb|EDL91302.1| RAB7, member RAS oncogene family, isoform CRA_a [Rattus norvegicus]
Length = 207
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|194742730|ref|XP_001953854.1| GF17026 [Drosophila ananassae]
gi|190626891|gb|EDV42415.1| GF17026 [Drosophila ananassae]
Length = 207
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 93/153 (60%), Gaps = 3/153 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ G+ VGKTS V+ +V+ +F +NT+G++ STK + + R V LQIWD A
Sbjct: 9 FKVIVIGEEGVGKTSLVRRYVEGRFSIRERNTIGLNLSTKEV---RVDDRAVTLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R++C+S +Y+ D C+++FD+T+ SF+S+ W+ K + P ++L +
Sbjct: 66 GQERFLCLSSCFYRGVDCCVLVFDITSLDSFKSLGMWRDQFLIKADPRDPVNFPFIVLGN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKE 393
K DL + V N ++ C + N +S+ E S+KE
Sbjct: 126 KVDLDNSHVPNNRVKEWCQRNNNISYYETSAKE 158
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 32/43 (74%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+++ K++VIG+ VGKTS V+ +V+ +F +NT+G++ STK
Sbjct: 6 KSLFKVIVIGEEGVGKTSLVRRYVEGRFSIRERNTIGLNLSTK 48
>gi|327287672|ref|XP_003228552.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-39A-like
[Anolis carolinensis]
Length = 253
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 102/177 (57%), Gaps = 21/177 (11%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLD--NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
+ +++ GDSTVGK+ + F + +F + + TVGVDF ++LL + G+ +KLQ+WD
Sbjct: 47 FRLIVLGDSTVGKSCLLHRFTEGRFPGPRHAEPTVGVDFFSRLLEIEP--GKRIKLQLWD 104
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM------ 352
AGQ+R+ ++R YY+NS G +++FD+TNR SFE V W LD G M
Sbjct: 105 TAGQERFRSITRSYYRNSVGGLLVFDITNRSSFEHVYDW---------LDEGKMHAEPFQ 155
Query: 353 LPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ +L+ KCDL +RQV E E + M +IE S+K+ + +E+S L I
Sbjct: 156 IVFILVGHKCDLETERQVSREEAEELASNCG-MRYIETSAKDAINVEESFMILTRDI 211
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLD--NYKNTVGVDFSTKLLSHKKYGGRP 221
+ I + + +++ GDSTVGK+ + F + +F + + TVGVDF ++LL + G+
Sbjct: 40 TAIWSFQFRLIVLGDSTVGKSCLLHRFTEGRFPGPRHAEPTVGVDFFSRLLEIEP--GKR 97
Query: 222 VKLQIWD 228
+KLQ+WD
Sbjct: 98 IKLQLWD 104
>gi|66811460|ref|XP_639910.1| Rab GTPase [Dictyostelium discoideum AX4]
gi|74897037|sp|Q54P07.1|RB32D_DICDI RecName: Full=Ras-related protein Rab-32D
gi|60466945|gb|EAL64989.1| Rab GTPase [Dictyostelium discoideum AX4]
Length = 228
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 99/170 (58%), Gaps = 7/170 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV-KLQIWDIAG 301
+++ GD VGKTS + + +KF + YK+T+G DF LS Y + +Q+WD AG
Sbjct: 12 LILIGDVNVGKTSILHRLIFSKFTEEYKSTIGADF----LSKTFYQNDIITHIQLWDTAG 67
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA--MLPCLLLA 359
Q++Y C++ +++ SD I++FD++N SF ++ W SK I +G LP LLLA
Sbjct: 68 QEKYWCLTSAFWRTSDAVILVFDISNESSFRNLNFWYKQFKSKSINPDGTEKQLPILLLA 127
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+K D R V+ +EI C + + EVS+K + I++S+ LV+ II
Sbjct: 128 NKSDSLTRAVDQSEINQWCTDHKVNLYYEVSAKSSINIKESILKLVEVII 177
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
LK+++IGD VGKTS + + +KF + YK+T+G DF +K
Sbjct: 10 LKLILIGDVNVGKTSILHRLIFSKFTEEYKSTIGADFLSK 49
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 172 LILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV-KLQIWD 228
LILI GD VGKTS + + +KF + YK+T+G DF LS Y + +Q+WD
Sbjct: 12 LILI-GDVNVGKTSILHRLIFSKFTEEYKSTIGADF----LSKTFYQNDIITHIQLWD 64
>gi|50234889|ref|NP_940892.1| ras-related protein Rab-43 isoform a [Homo sapiens]
gi|325910891|ref|NP_001191812.1| ras-related protein Rab-43 isoform a [Homo sapiens]
gi|325910893|ref|NP_001191813.1| ras-related protein Rab-43 isoform a [Homo sapiens]
gi|325910895|ref|NP_001191814.1| ras-related protein Rab-43 isoform a [Homo sapiens]
gi|325910897|ref|NP_001191815.1| ras-related protein Rab-43 isoform a [Homo sapiens]
gi|332261797|ref|XP_003279953.1| PREDICTED: ras-related protein Rab-43 isoform 1 [Nomascus
leucogenys]
gi|332261799|ref|XP_003279954.1| PREDICTED: ras-related protein Rab-43 isoform 2 [Nomascus
leucogenys]
gi|332261801|ref|XP_003279955.1| PREDICTED: ras-related protein Rab-43 isoform 3 [Nomascus
leucogenys]
gi|332817855|ref|XP_003339099.1| PREDICTED: ras-related protein Rab-43 [Pan troglodytes]
gi|332817859|ref|XP_003310046.1| PREDICTED: ras-related protein Rab-43 isoform 4 [Pan troglodytes]
gi|410037466|ref|XP_003950231.1| PREDICTED: ras-related protein Rab-43 [Pan troglodytes]
gi|426342028|ref|XP_004036318.1| PREDICTED: ras-related protein Rab-43 isoform 1 [Gorilla gorilla
gorilla]
gi|426342030|ref|XP_004036319.1| PREDICTED: ras-related protein Rab-43 isoform 2 [Gorilla gorilla
gorilla]
gi|74727944|sp|Q86YS6.1|RAB43_HUMAN RecName: Full=Ras-related protein Rab-43; AltName: Full=Ras-related
protein Rab-41
gi|27549389|gb|AAO17291.1| RAB43 [Homo sapiens]
gi|38382891|gb|AAH62319.1| RAB43, member RAS oncogene family [Homo sapiens]
gi|119599689|gb|EAW79283.1| hCG2022580, isoform CRA_f [Homo sapiens]
gi|158255464|dbj|BAF83703.1| unnamed protein product [Homo sapiens]
gi|383413231|gb|AFH29829.1| ras-related protein Rab-43 isoform a [Macaca mulatta]
gi|384941264|gb|AFI34237.1| ras-related protein Rab-43 isoform a [Macaca mulatta]
gi|410219510|gb|JAA06974.1| RAB43, member RAS oncogene family [Pan troglodytes]
gi|410251892|gb|JAA13913.1| RAB43, member RAS oncogene family [Pan troglodytes]
gi|410301460|gb|JAA29330.1| RAB43, member RAS oncogene family [Pan troglodytes]
gi|410331215|gb|JAA34554.1| RAB43, member RAS oncogene family [Pan troglodytes]
Length = 212
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 99/162 (61%), Gaps = 8/162 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWDTA 75
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D+T R SF SV W D+ G+ + LL+ +
Sbjct: 76 GQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA----GSNIVQLLIGN 131
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL + R+V + E +++ Y+ + IE S+K+ +E++
Sbjct: 132 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 173
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWD 73
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K++++GD++VGKT VQ F F + +T+GVDF+ K L
Sbjct: 18 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTL 60
>gi|348553989|ref|XP_003462808.1| PREDICTED: ras-related protein Rab-43-like [Cavia porcellus]
Length = 210
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 103/170 (60%), Gaps = 8/170 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 17 FKLVLVGDASVGKTCVVQRFKTGTFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWDTA 73
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D+T R +F SV W D+ G+ + LL+ +
Sbjct: 74 GQERFRTITQSYYRSANGAILAYDITKRSTFLSVPHWIEDVRKYA----GSSIVQLLIGN 129
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
K DL + R+V++ E +++ Y+ + IE S+K+ +E++ + +I
Sbjct: 130 KSDLAELREVQLAEAQSLAKHYDILCAIETSAKDASNVEEAFVQVATELI 179
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 17 FKLVLVGDASVGKTCVVQRFKTGTFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWD 71
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 100 PRPSDAET----VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P P D + + K++++GD++VGKT VQ F F + +T+GVDF+ K L
Sbjct: 4 PGPGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGTFSERQGSTIGVDFTMKTL 58
>gi|197098410|ref|NP_001127416.1| ras-related protein Rab-7a [Pongo abelii]
gi|75070701|sp|Q5R9Y4.1|RAB7A_PONAB RecName: Full=Ras-related protein Rab-7a
gi|55729388|emb|CAH91426.1| hypothetical protein [Pongo abelii]
Length = 207
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|291388446|ref|XP_002710790.1| PREDICTED: RAB7A, member RAS oncogene family-like [Oryctolagus
cuniculus]
Length = 207
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 111/206 (53%), Gaps = 16/206 (7%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFRNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLCVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL +RQV +A C+ N + + E S+KE + +E + + + + A++++
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF----------QTIAQNALKQE 177
Query: 423 SSIRLSEETLRDDQPKKLVPADKVST 448
+ + L E +P KL D+ T
Sbjct: 178 TEVELYNEF---PEPIKLDKNDRAKT 200
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFRNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFRNQYKATIGADFLTK 48
>gi|50979156|ref|NP_001003316.1| ras-related protein Rab-7a [Canis lupus familiaris]
gi|131797|sp|P18067.1|RAB7A_CANFA RecName: Full=Ras-related protein Rab-7a
gi|164058|gb|AAA30890.1| GTP-binding protein (rab7) [Canis lupus familiaris]
Length = 207
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|34147513|ref|NP_004628.4| ras-related protein Rab-7a [Homo sapiens]
gi|148747526|ref|NP_033031.2| ras-related protein Rab-7a [Mus musculus]
gi|126336249|ref|XP_001366922.1| PREDICTED: ras-related protein Rab-7a-like [Monodelphis domestica]
gi|296225983|ref|XP_002758722.1| PREDICTED: ras-related protein Rab-7a-like isoform 1 [Callithrix
jacchus]
gi|296225985|ref|XP_002758723.1| PREDICTED: ras-related protein Rab-7a-like isoform 2 [Callithrix
jacchus]
gi|301764537|ref|XP_002917684.1| PREDICTED: ras-related protein Rab-7a-like [Ailuropoda melanoleuca]
gi|332261783|ref|XP_003279946.1| PREDICTED: ras-related protein Rab-7a isoform 1 [Nomascus
leucogenys]
gi|332817831|ref|XP_526302.3| PREDICTED: ras-related protein Rab-7a isoform 3 [Pan troglodytes]
gi|395516722|ref|XP_003762536.1| PREDICTED: ras-related protein Rab-7a [Sarcophilus harrisii]
gi|395847153|ref|XP_003796248.1| PREDICTED: ras-related protein Rab-7a [Otolemur garnettii]
gi|397518563|ref|XP_003829454.1| PREDICTED: ras-related protein Rab-7a [Pan paniscus]
gi|403268248|ref|XP_003926190.1| PREDICTED: ras-related protein Rab-7a [Saimiri boliviensis
boliviensis]
gi|410037454|ref|XP_003950229.1| PREDICTED: ras-related protein Rab-7a isoform 1 [Pan troglodytes]
gi|410037456|ref|XP_003950230.1| PREDICTED: ras-related protein Rab-7a isoform 2 [Pan troglodytes]
gi|410951826|ref|XP_003982594.1| PREDICTED: ras-related protein Rab-7a-like [Felis catus]
gi|426342010|ref|XP_004036309.1| PREDICTED: ras-related protein Rab-7a-like [Gorilla gorilla
gorilla]
gi|441665150|ref|XP_004091796.1| PREDICTED: ras-related protein Rab-7a isoform 2 [Nomascus
leucogenys]
gi|1709999|sp|P51149.1|RAB7A_HUMAN RecName: Full=Ras-related protein Rab-7a
gi|46397834|sp|P51150.2|RAB7A_MOUSE RecName: Full=Ras-related protein Rab-7a
gi|20379060|gb|AAM21090.1|AF498942_1 small GTP binding protein RAB7 [Homo sapiens]
gi|1089893|emb|CAA63763.1| RAB7 protein [Homo sapiens]
gi|12836622|dbj|BAB23738.1| unnamed protein product [Mus musculus]
gi|13435456|gb|AAH04597.1| RAB7, member RAS oncogene family [Mus musculus]
gi|33870783|gb|AAH08721.2| RAB7A, member RAS oncogene family [Homo sapiens]
gi|56269740|gb|AAH86793.1| RAB7, member RAS oncogene family [Mus musculus]
gi|60688670|gb|AAH13728.2| RAB7A, member RAS oncogene family [Homo sapiens]
gi|71060033|emb|CAJ18560.1| Rab7 [Mus musculus]
gi|74143376|dbj|BAE24180.1| unnamed protein product [Mus musculus]
gi|74178374|dbj|BAE32452.1| unnamed protein product [Mus musculus]
gi|74185227|dbj|BAE30093.1| unnamed protein product [Mus musculus]
gi|74186523|dbj|BAE34750.1| unnamed protein product [Mus musculus]
gi|74195255|dbj|BAE28355.1| unnamed protein product [Mus musculus]
gi|74213341|dbj|BAE35490.1| unnamed protein product [Mus musculus]
gi|74220348|dbj|BAE31401.1| unnamed protein product [Mus musculus]
gi|112292967|dbj|BAF02861.1| Rab7 [Mus musculus]
gi|119599708|gb|EAW79302.1| RAB7, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|148666823|gb|EDK99239.1| mCG130610 [Mus musculus]
gi|168277952|dbj|BAG10954.1| Ras-related protein Rab-7a [synthetic construct]
gi|355564540|gb|EHH21040.1| hypothetical protein EGK_04016 [Macaca mulatta]
gi|355786382|gb|EHH66565.1| hypothetical protein EGM_03582 [Macaca fascicularis]
gi|380785041|gb|AFE64396.1| ras-related protein Rab-7a [Macaca mulatta]
gi|380785043|gb|AFE64397.1| ras-related protein Rab-7a [Macaca mulatta]
gi|380816414|gb|AFE80081.1| ras-related protein Rab-7a [Macaca mulatta]
gi|380816416|gb|AFE80082.1| ras-related protein Rab-7a [Macaca mulatta]
gi|383410517|gb|AFH28472.1| ras-related protein Rab-7a [Macaca mulatta]
gi|383410519|gb|AFH28473.1| ras-related protein Rab-7a [Macaca mulatta]
gi|383421483|gb|AFH33955.1| ras-related protein Rab-7a [Macaca mulatta]
gi|383421485|gb|AFH33956.1| ras-related protein Rab-7a [Macaca mulatta]
gi|384949354|gb|AFI38282.1| ras-related protein Rab-7a [Macaca mulatta]
gi|410226154|gb|JAA10296.1| RAB7A, member RAS oncogene family [Pan troglodytes]
gi|410226162|gb|JAA10300.1| RAB7A, member RAS oncogene family [Pan troglodytes]
gi|417397111|gb|JAA45589.1| Putative ras-related protein rab-7a [Desmodus rotundus]
gi|431913713|gb|ELK15203.1| Ras-related protein Rab-7a [Pteropus alecto]
gi|432103477|gb|ELK30581.1| Ras-related protein Rab-7a [Myotis davidii]
gi|444512838|gb|ELV10180.1| Ras-related protein Rab-7a [Tupaia chinensis]
Length = 207
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|126697446|gb|ABO26680.1| RAB protein [Haliotis discus discus]
Length = 200
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 108/189 (57%), Gaps = 11/189 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F Y T+GVDF + + G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFAANTFSGTYITTIGVDFKIRTVD---VNGEKVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+++ +SF +V +W H++D C + N +L+ +
Sbjct: 66 GQERFRTITSTYYRGTHGVIVVYDVSSGESFANVKRWLHEIDQNCDVVNR-----ILVGN 120
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE--A 418
K D PDR+V + + + E S+KE++ +E+ M + R++ S + E++ A
Sbjct: 121 KDDDPDRKVVLTQDAQRFADQMGIQLYETSAKENINVEE-MFLAITRLVLSTKKEQQKKA 179
Query: 419 VERKSSIRL 427
+ +I+L
Sbjct: 180 ADAPQTIKL 188
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F Y T+GVDF + + G VKLQIWD
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFAANTFSGTYITTIGVDFKIRTVD---VNGEKVKLQIWD 63
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS VGK+S + F N F Y T+GVDF +
Sbjct: 8 LFKLLIIGDSGVGKSSLLLRFAANTFSGTYITTIGVDFKIR 48
>gi|330791275|ref|XP_003283719.1| Rab GTPase [Dictyostelium purpureum]
gi|325086342|gb|EGC39733.1| Rab GTPase [Dictyostelium purpureum]
Length = 195
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 96/177 (54%), Gaps = 10/177 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ GD GKTS + V + F Y T+GVDF K+++ V+LQ+WDI+
Sbjct: 14 YKILVVGDIGTGKTSITRSLVYDTFSKRYNPTIGVDFGLKVINWDP--KTEVRLQLWDIS 71
Query: 301 GQDRYIC---MSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
G +R M+RVYY N+ G +I FD+T +F+ WK +D +P +L
Sbjct: 72 GSERLSIKSQMTRVYYNNAVGAMITFDVTGMSTFKGAAIWKAGIDQVTNDSKVKPIPVVL 131
Query: 358 LASKCDLPDRQVEI-----NEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
LA+K DL + + N+++ C F+ W ++S+K+++ IE + FLVD I+
Sbjct: 132 LANKWDLVNEGKDSFIKTENDMDKYCKDNGFIGWFKISAKDNMNIEKAARFLVDHIL 188
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 102 PSDAETV--LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P+D E KILV+GD GKTS + V + F Y T+GVDF K+++
Sbjct: 5 PADDEEYNEYKILVVGDIGTGKTSITRSLVYDTFSKRYNPTIGVDFGLKVIN 56
>gi|56118925|ref|NP_001008026.1| RAB7A, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|147905326|ref|NP_001083352.1| RAB7A, member RAS oncogene family [Xenopus laevis]
gi|38014729|gb|AAH60401.1| MGC68523 protein [Xenopus laevis]
gi|51704077|gb|AAH80905.1| RAB7A, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|89267364|emb|CAJ82793.1| rab7,member RAS oncogene family [Xenopus (Silurana) tropicalis]
Length = 207
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV + CH N + + E S+KE + +E +
Sbjct: 128 DLENRQVTTKRAQVWCHSKNNIPYFETSAKEAINVEQAF 166
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTK 48
>gi|348507922|ref|XP_003441504.1| PREDICTED: ras-related protein Rab-7a-like [Oreochromis niloticus]
Length = 207
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C N + + E S+KE + +E +
Sbjct: 128 DLENRQVTTKRAQAWCQSKNNIPYFETSAKEAINVEQAF 166
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK---EVMVDDRLVTMQIWD 63
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|224066111|ref|XP_002198172.1| PREDICTED: ras-related protein Rab-7a [Taeniopygia guttata]
Length = 207
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DLENRQVTTKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|449681808|ref|XP_002160165.2| PREDICTED: ras-related protein Rab-7a-like [Hydra magnipapillata]
Length = 206
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 97/176 (55%), Gaps = 8/176 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 12 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 68
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T SF+++ W+ + + + P ++L +K
Sbjct: 69 ERFQSLGVAFYRGADCCVLVFDVTAPNSFKTLDSWRDEFLIQASPRDPENFPFVVLGNKV 128
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
DL +R V + CH N + + E S+KE + +E + + I K + +EA
Sbjct: 129 DLENRAVSAKRAQQWCHSKNEIPYFETSAKEGINVEHAF-----QTIAKKALAQEA 179
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 12 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV---MVDDRLVTMQIWD 64
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 4 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 49
>gi|354482839|ref|XP_003503603.1| PREDICTED: ras-related protein Rab-7a-like [Cricetulus griseus]
gi|344253367|gb|EGW09471.1| Ras-related protein Rab-7a [Cricetulus griseus]
Length = 207
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|327265951|ref|XP_003217771.1| PREDICTED: ras-related protein Rab-7a-like [Anolis carolinensis]
gi|387017942|gb|AFJ51089.1| ras-related protein Rab-7a-like [Crotalus adamanteus]
Length = 207
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DLENRQVTTKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|395837388|ref|XP_003791617.1| PREDICTED: ras-related protein Rab-19 [Otolemur garnettii]
Length = 217
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 111/217 (51%), Gaps = 22/217 (10%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L + G+ VK+Q+WD A
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSL---EIDGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT +FESV W H+++ A L +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRLSTFESVPHWIHEIEKY----GAANLVIMLIGN 130
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K DL + R V + + +Y ++ +E S+KE I++ M E +
Sbjct: 131 KSDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVL----------MARELI 180
Query: 420 ERKSSIRLSEETL----RDDQPKKLVPADKVSTYCWC 452
R S SE TL D P + + T+C C
Sbjct: 181 ARNSLHLFSEGTLGSLPLDSSPVLVAQSPSEKTHCSC 217
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L + G+ VK+Q+WD
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSL---EIDGKKVKMQVWD 72
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGDS VGKT VQ F + + +NT+GVDF+ + L
Sbjct: 17 LFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSL 59
>gi|348510369|ref|XP_003442718.1| PREDICTED: ras-related protein Rab-7a-like [Oreochromis niloticus]
gi|410920241|ref|XP_003973592.1| PREDICTED: ras-related protein Rab-7a-like [Takifugu rubripes]
gi|317419023|emb|CBN81061.1| Ras-related protein Rab-7a [Dicentrarchus labrax]
gi|380706269|gb|AFD97434.1| Rab7 GTPase [Epinephelus coioides]
Length = 207
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C N + + E S+KE + +E +
Sbjct: 128 DLENRQVTTKRAQAWCQSKNNIPYFETSAKEAINVEQAF 166
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|218511591|gb|ACK77787.1| RAB7 [Cyprinus carpio]
Length = 204
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 107/195 (54%), Gaps = 10/195 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV---MVDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL +RQV +A C N + + E S+KE + ++ + + I +++E+VE
Sbjct: 128 DLENRQVTTKRAQAWCQSKNNIPYFETSAKEAINVDQAF-----QTIARNALKQESVETY 182
Query: 423 SSIRLSEETLRDDQP 437
+ LRDD+P
Sbjct: 183 DF--PDQIKLRDDRP 195
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV---MVDDRLVTMQIWD 63
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|62858653|ref|NP_001016330.1| RAB43, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|89266921|emb|CAJ82248.1| RAB43, member RAS oncogene family [Xenopus (Silurana) tropicalis]
Length = 209
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 97/162 (59%), Gaps = 8/162 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD+ VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 16 FKLILIGDAGVGKTCVVQRFRSGVFAERQGSTIGVDFTMKTLEIQ---GKRVKLQIWDTA 72
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G II +D+T RKSF SV +W D+ G+ + LL+ +
Sbjct: 73 GQERFRTITQSYYRSANGAIIAYDITKRKSFASVPRWIEDVKKYA----GSNIVQLLIGN 128
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL + R+V + E E + + IE S+K+ +E++
Sbjct: 129 KSDLREFREVALQEAETLARHCDITCAIETSAKDSSNVEEAF 170
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD+ VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 16 FKLILIGDAGVGKTCVVQRFRSGVFAERQGSTIGVDFTMKTLEIQ---GKRVKLQIWD 70
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 100 PRPSDAET--VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P P D + + K+++IGD+ VGKT VQ F F + +T+GVDF+ K L
Sbjct: 5 PGPPDEQYDFLFKLILIGDAGVGKTCVVQRFRSGVFAERQGSTIGVDFTMKTL 57
>gi|432857138|ref|XP_004068548.1| PREDICTED: ras-related protein Rab-7a-like [Oryzias latipes]
Length = 207
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C N + + E S+KE + +E +
Sbjct: 128 DLENRQVTTKRAQAWCQSKNNIPYFETSAKEAINVEQAF 166
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|41055538|ref|NP_957222.1| ras-related protein Rab-7a [Danio rerio]
gi|32451664|gb|AAH54602.1| RAB7, member RAS oncogene family [Danio rerio]
gi|160774333|gb|AAI55203.1| Rab7 protein [Danio rerio]
Length = 207
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C N + + E S+KE + +E +
Sbjct: 128 DLENRQVTTKRAQAWCQSKNNIPYFETSAKEAINVEQAF 166
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|50754381|ref|XP_414359.1| PREDICTED: ras-related protein Rab-7a isoform 2 [Gallus gallus]
gi|326927938|ref|XP_003210144.1| PREDICTED: ras-related protein Rab-7a-like [Meleagris gallopavo]
gi|363738555|ref|XP_003642026.1| PREDICTED: ras-related protein Rab-7a isoform 1 [Gallus gallus]
gi|449276664|gb|EMC85096.1| Ras-related protein Rab-7a [Columba livia]
Length = 207
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DLENRQVTTKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|407034149|gb|EKE37092.1| small GTPase Rab 32, putative, partial [Entamoeba nuttalli P19]
Length = 254
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 103/188 (54%), Gaps = 12/188 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ GD + GKTS + F F DNY+ T+GV+FS+K ++ V+L++WDIAGQ
Sbjct: 55 IIVVGDPSSGKTSSIHQFCDGIFEDNYQPTIGVEFSSKFIT---VNTNEVELRLWDIAGQ 111
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
D Y MSRVYY ++M D+TN S E V +WK ++D + + +N +P LL+ +K
Sbjct: 112 DHYAGMSRVYYXXX--XLVMCDVTNNTSIEGVKKWKANIDDRVLFNN-EKIPVLLIGNKA 168
Query: 363 DL----PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC--SKRMEE 416
DL ++ +++ + + F + VS+K +E++M + II +E
Sbjct: 169 DLLKTDEEKDAAAAKLKEIANSNGFKGMLLVSAKTGFHVEETMENIAKLIIAQFGNVLEA 228
Query: 417 EAVERKSS 424
E E SS
Sbjct: 229 EGNEDASS 236
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
I++ GD + GKTS + F F DNY+ T+GV+FS+K ++ V+L++WDI
Sbjct: 55 IIVVGDPSSGKTSSIHQFCDGIFEDNYQPTIGVEFSSKFIT---VNTNEVELRLWDI 108
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
LKI+V+GD + GKTS + F F DNY+ T+GV+FS+K ++
Sbjct: 53 LKIIVVGDPSSGKTSSIHQFCDGIFEDNYQPTIGVEFSSKFIT 95
>gi|403276230|ref|XP_003929809.1| PREDICTED: ras-related protein Rab-19 [Saimiri boliviensis
boliviensis]
Length = 217
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 109/213 (51%), Gaps = 14/213 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L G+ VK+Q+WD A
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLD---IDGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT +FES+ W H+++ A + +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRWSTFESIPHWIHEIEKY----GAANVVIMLIGN 130
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL + R V + + +Y ++ +E S+KE I++ + +I +
Sbjct: 131 KCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMAKELIARNSLHHYGE 190
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
+S+ L D P + T+C C
Sbjct: 191 SALNSLPL------DSSPVLMAQGPSEKTHCTC 217
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L G+ VK+Q+WD
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLD---IDGKKVKMQVWD 72
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGDS VGKT VQ F + + +NT+GVDF+ + L
Sbjct: 17 LFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSL 59
>gi|118356223|ref|XP_001011370.1| Ras family protein [Tetrahymena thermophila]
gi|89293137|gb|EAR91125.1| Ras family protein [Tetrahymena thermophila SB210]
gi|307777752|dbj|BAJ21272.1| Rab-family small GTPase Rab1E [Tetrahymena thermophila]
Length = 250
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 102/173 (58%), Gaps = 10/173 (5%)
Query: 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
++I G+S+VGK+S + F ++F ++Y T+GVDF K L+ GR VKLQIWD AG
Sbjct: 11 KLVIIGNSSVGKSSVLLRFSDDQFSESYLTTIGVDFRFKTLN---IDGRKVKLQIWDTAG 67
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLAS 360
Q+R+ ++ YY+ +DG ++++D+TN SFE + + W ++++S D + LLL +
Sbjct: 68 QERFRTITNAYYKGADGIVLVYDITNSTSFEDIERFWLNEVESYAEKD----VELLLLGN 123
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
K DL D RQVE N + + M + E S+K IE + + R++ K
Sbjct: 124 KSDLSDQRQVETNMVSEYAEK-KHMDFYETSAKTSDQIEQAFLSISKRLMSKK 175
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 5/60 (8%)
Query: 171 YLI--LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
YLI +I G+S+VGK+S + F ++F ++Y T+GVDF K L+ GR VKLQIWD
Sbjct: 8 YLIKLVIIGNSSVGKSSVLLRFSDDQFSESYLTTIGVDFRFKTLN---IDGRKVKLQIWD 64
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 33/44 (75%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
++K+++IG+S+VGK+S + F ++F ++Y T+GVDF K L+
Sbjct: 9 LIKLVIIGNSSVGKSSVLLRFSDDQFSESYLTTIGVDFRFKTLN 52
>gi|410919497|ref|XP_003973221.1| PREDICTED: ras-related protein Rab-7a-like [Takifugu rubripes]
gi|47229587|emb|CAG06783.1| unnamed protein product [Tetraodon nigroviridis]
Length = 207
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C N + + E S+KE + +E +
Sbjct: 128 DLENRQVTTKRAQAWCQSKNNIPYFETSAKEAINVEQAF 166
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|449270352|gb|EMC81037.1| Ras-related protein Rab-3C [Columba livia]
Length = 219
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 113/194 (58%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 135
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D +V E + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 136 KCDMEDERVIFTERGKHLAEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 191
Query: 420 ERKSSIRLSEETLR 433
E +I S++ R
Sbjct: 192 ETDPAIAASKQNTR 205
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 77
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 64
>gi|452820386|gb|EME27429.1| Rab family, other [Galdieria sulphuraria]
Length = 206
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 96/176 (54%), Gaps = 4/176 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GDS VGKTS ++ FV +F YK T+G DF TK + R V LQIWD AGQ
Sbjct: 14 VVVLGDSGVGKTSLLERFVNRRFSQQYKATIGADFLTKDMF---VDDRNVNLQIWDTAGQ 70
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+RY + +Y+ +D C++++D+T+ KSFES+ W+ + + P ++L +K
Sbjct: 71 ERYQSLGSAFYRGADACVLVYDITDVKSFESLETWRDEFLVSASPSDPQHFPFIVLGNKS 130
Query: 363 DLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
DL R V + C + + E S+KE++ ++ + + +V + EEE
Sbjct: 131 DLEGQRSVPSRRAQQWCVSKGDIPYFETSAKENISVDKAFDVVVTNALRRGEREEE 186
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 162 TFSPIQTPSYL-ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR 220
T S I P L +++ GDS VGKTS ++ FV +F YK T+G DF TK + R
Sbjct: 2 TSSSITRPKLLKVVVLGDSGVGKTSLLERFVNRRFSQQYKATIGADFLTKDMF---VDDR 58
Query: 221 PVKLQIWD 228
V LQIWD
Sbjct: 59 NVNLQIWD 66
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 30/41 (73%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+LK++V+GDS VGKTS ++ FV +F YK T+G DF TK
Sbjct: 11 LLKVVVLGDSGVGKTSLLERFVNRRFSQQYKATIGADFLTK 51
>gi|300121144|emb|CBK21525.2| unnamed protein product [Blastocystis hominis]
Length = 176
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 100/173 (57%), Gaps = 21/173 (12%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ++I GDS VGKT N F ++ T+GVDF +K + G + +K Q+WD A
Sbjct: 8 FKMVIVGDSGVGKT--------NLFQEDTSATIGVDFYSKSVQR---GNKIIKTQLWDTA 56
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY M+ YY+ S G II+FD+T+R+SF ++ QW +++ S D +P L++ +
Sbjct: 57 GQERYRAMAAAYYRGSTGAIIVFDVTHRQSFNNLQQWINEIGSYSSSD----MPILIIGN 112
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCDL R V E +A Q+N M +IE S+ + D++N D II +K
Sbjct: 113 KCDLASVRTVSSEEAQAFAEQHN-MGYIETSA----LTADNVNKAFDTIIDTK 160
>gi|297263161|ref|XP_001095709.2| PREDICTED: ras-related protein Rab-7a [Macaca mulatta]
Length = 208
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 12 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 68
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 69 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 128
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 129 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 167
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 12 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 64
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 7 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 49
>gi|147901693|ref|NP_001088531.1| RAB3A, member RAS oncogene family [Xenopus laevis]
gi|54311426|gb|AAH84880.1| Rab3a-prov protein [Xenopus laevis]
Length = 220
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 102/175 (58%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E ++ + E S+K+++ ++ + LVD IIC K E
Sbjct: 136 KCDMEDERVVSSERGRQLAEHLGFEFFEASAKDNINVKQTFERLVD-IICEKMSE 189
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 77
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 13 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 64
>gi|407043376|gb|EKE41918.1| Rab family GTPase [Entamoeba nuttalli P19]
Length = 204
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 105/193 (54%), Gaps = 7/193 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ++ GDS VGKTS + +V N+F D YK T+G DF K ++ G LQIWD A
Sbjct: 8 FKTILIGDSGVGKTSLINRYVNNQFSDVYKATIGSDFLIKPVT---VNGAQYTLQIWDTA 64
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +RY C+ +Y+ SD C++ FD+TNR+SF + +WK++ N A +P ++ +
Sbjct: 65 GHERYSCVVTTFYRGSDCCVLCFDVTNRESFNHLEKWKNEFIDGANATNPASIPIYVVGN 124
Query: 361 K--CDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
K C+ R+V + C + N + E S+ + D L + ++ S+R +EE
Sbjct: 125 KIDCEPNKREVSQEQAREWC-KLNGHKYFETSAMSAENVTDLFTTLAEDVV-SRREDEEE 182
Query: 419 VERKSSIRLSEET 431
E+ + I + +++
Sbjct: 183 PEKPAPIIIQKQS 195
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ++ GDS VGKTS + +V N+F D YK T+G DF K ++ G LQIWD
Sbjct: 8 FKTILIGDSGVGKTSLINRYVNNQFSDVYKATIGSDFLIKPVT---VNGAQYTLQIWD 62
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K ++IGDS VGKTS + +V N+F D YK T+G DF K
Sbjct: 7 LFKTILIGDSGVGKTSLINRYVNNQFSDVYKATIGSDFLIK 47
>gi|149428156|ref|XP_001511148.1| PREDICTED: ras-related protein Rab-3A, partial [Ornithorhynchus
anatinus]
Length = 223
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 102/175 (58%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 26 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 82
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 83 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 138
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E ++ + E S+K+++ ++ + LVD IIC K E
Sbjct: 139 KCDMEDERVVSSERGRQLAEHLGFEFFEASAKDNINVKQTFERLVD-IICEKMSE 192
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 26 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 80
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 16 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 67
>gi|440790656|gb|ELR11936.1| Ras family protein [Acanthamoeba castellanii str. Neff]
Length = 228
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 12/176 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS------HKKYGGRPVKLQI 296
I+I GDS VGK++ + F + F ++ K T+GV F+TK ++ K + VKLQ+
Sbjct: 15 IVIVGDSGVGKSNIMSRFTNDTFEESSKTTIGVAFATKNMAVETSNDSTKDCKKQVKLQV 74
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
WD AGQ+RY +S YY+ + G ++++D+T+R+S +S+ +W ++D C D +
Sbjct: 75 WDTAGQERYRALSSAYYRGAQGALVVYDITSRESLDSIPKWLEEIDKYCTQD----VVVT 130
Query: 357 LLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
L+ +K DL + R V + E + V + N M +IE S+K+ IE + L+ II S
Sbjct: 131 LVGNKLDLSENRCVSVEEGKKVAAREN-MFFIETSAKDATNIEKAFTHLIKEIIQS 185
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+LKI+++GDS VGK++ + F + F ++ K T+GV F+TK ++
Sbjct: 12 LLKIVIVGDSGVGKSNIMSRFTNDTFEESSKTTIGVAFATKNMA 55
>gi|62858351|ref|NP_001016426.1| RAB3A, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|89273837|emb|CAJ83688.1| RAB3A, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|89273838|emb|CAJ83689.1| RAB3A, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|134024095|gb|AAI35627.1| RAB3A, member RAS oncogene family [Xenopus (Silurana) tropicalis]
Length = 220
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 102/175 (58%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E ++ + E S+K+++ ++ + LVD IIC K E
Sbjct: 136 KCDMEDERVVSSERGRQLAEHLGFEFFEASAKDNINVKQTFERLVD-IICEKMSE 189
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 77
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 13 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 64
>gi|354481757|ref|XP_003503067.1| PREDICTED: ras-related protein Rab-19-like [Cricetulus griseus]
Length = 217
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 117/218 (53%), Gaps = 24/218 (11%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GDS VGKT VQ F + ++ +NT+GVDF+ + L + G+ VK+Q+WD A
Sbjct: 18 FKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSL---EIDGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT R +FESV W H+++ A L +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKY----GAANLVIMLIGN 130
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K +L +R+V + + +Y ++ +E S+KE I++ + +I
Sbjct: 131 KSNLWENRRVLFEDACTLAEKYGLLAVLETSAKESRNIDEVFVLMAKELIA--------- 181
Query: 420 ERKSSIRLSEETL-----RDDQPKKLVPADKVSTYCWC 452
++S+ L E++ +D P + + +T C C
Sbjct: 182 --RNSLHLYGESIQQGLSQDSSPILVAQGPRENTRCTC 217
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDS VGKT VQ F + ++ +NT+GVDF+ + L + G+ VK+Q+WD
Sbjct: 18 FKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSL---EIDGKKVKMQVWD 72
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ + + K+++IGDS VGKT VQ F + ++ +NT+GVDF+ + L
Sbjct: 13 NVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSL 59
>gi|51247925|pdb|1VG1|A Chain A, Gdp-bound Rab7
gi|51247931|pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
gi|51247933|pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
gi|51247935|pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
gi|51247937|pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK---EVMVDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK---EVMVDDRLVTMQIWD 63
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|355714954|gb|AES05174.1| ras-related protein Rab-43-like protein [Mustela putorius furo]
Length = 211
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 99/162 (61%), Gaps = 8/162 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWDTA 75
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D+T R SF SV W D+ G+ + LL+ +
Sbjct: 76 GQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA----GSNIVQLLIGN 131
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL + R+V + E +++ Y+ + IE S+K+ +E++
Sbjct: 132 KSDLGELREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 173
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWD 73
Score = 41.6 bits (96), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K++++GD++VGKT VQ F F + +T+GVDF+ K L
Sbjct: 18 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTL 60
>gi|149036685|gb|EDL91303.1| RAB7, member RAS oncogene family, isoform CRA_b [Rattus norvegicus]
Length = 206
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK---EVMVDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK---EVMVDDRLVTMQIWD 63
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|291413290|ref|XP_002722907.1| PREDICTED: RAB19, member RAS oncogene family [Oryctolagus
cuniculus]
Length = 217
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 98/171 (57%), Gaps = 8/171 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT VQ F + ++ +NT+GVDF+ + L + G+ VK+Q+WD A
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTESRQNTIGVDFTVRSL---EVDGKRVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT R +FESV W H+++ A L +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRRATFESVPHWIHEIEKY----GAANLVIMLIGN 130
Query: 361 KCD-LPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
K D +R V E + ++ ++ +E S+KE I++ + +I
Sbjct: 131 KSDRWEERHVLFEEACTLAEKHGLLAVLETSAKESRNIDEVFVLMAKELIA 181
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT VQ F + ++ +NT+GVDF+ + L + G+ VK+Q+WD
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTESRQNTIGVDFTVRSL---EVDGKRVKMQVWD 72
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
D + + KI++IGDS VGKT VQ F + ++ +NT+GVDF+ + L
Sbjct: 13 DFDYLFKIILIGDSNVGKTCVVQHFKSGVYTESRQNTIGVDFTVRSL 59
>gi|440800473|gb|ELR21511.1| Rab GTPase, putative [Acanthamoeba castellanii str. Neff]
Length = 228
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 12/176 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS------HKKYGGRPVKLQI 296
I+I GDS VGK++ + F + F ++ K T+GV F+TK ++ K + VKLQ+
Sbjct: 15 IVIVGDSGVGKSNIMSRFTNDTFEESSKTTIGVAFATKNMAVETSNDSTKDCKKQVKLQV 74
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
WD AGQ+RY +S YY+ + G ++++D+T+R+S +S+ +W ++D C D +
Sbjct: 75 WDTAGQERYRALSSAYYRGAQGALVVYDITSRESLDSIPKWLEEIDKYCTQD----VVVT 130
Query: 357 LLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
L+ +K DL + R V + E + V + N M +IE S+K+ IE + L+ II S
Sbjct: 131 LVGNKLDLSENRCVSVEEGKKVAAREN-MFFIETSAKDATNIEKAFTHLIKEIIQS 185
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+LKI+++GDS VGK++ + F + F ++ K T+GV F+TK ++
Sbjct: 12 LLKIVIVGDSGVGKSNIMSRFTNDTFEESSKTTIGVAFATKNMA 55
>gi|348671985|gb|EGZ11805.1| hypothetical protein PHYSODRAFT_355097 [Phytophthora sojae]
Length = 207
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 98/174 (56%), Gaps = 13/174 (7%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
T +I GDS VGK+S + F + F + T+GV+F KLL + GR VKL+IWD
Sbjct: 5 TLKYIIIGDSEVGKSSLLLQFTEQHFQPIHDLTIGVEFGAKLL---EVDGRKVKLEIWDT 61
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+ ++ ++R YY+ +DG ++++D++ R+SFE + +W + C D + +++
Sbjct: 62 AGQETFLSITRSYYRGADGALLVYDVSRRESFEHLGRWLQECHQNCHNDE---VEIMVVG 118
Query: 360 SKCDLPDRQVEINEIE----AVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCD+ +RQ E++E E A H F IE S+K L +E + I+
Sbjct: 119 MKCDVDERQREVSEDEGRNWAAAHGLYF---IEASAKTALNVEQAFALTATTIL 169
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
LK ++IGDS VGK+S + F + F + T+GV+F KLL
Sbjct: 6 LKYIIIGDSEVGKSSLLLQFTEQHFQPIHDLTIGVEFGAKLL 47
>gi|260803593|ref|XP_002596674.1| hypothetical protein BRAFLDRAFT_122037 [Branchiostoma floridae]
gi|229281933|gb|EEN52686.1| hypothetical protein BRAFLDRAFT_122037 [Branchiostoma floridae]
Length = 207
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 112/199 (56%), Gaps = 15/199 (7%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F Y T+GVDF + + G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFSGTYITTIGVDFKIRTT---EMNGEKVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+ SF +V +W H++D C + N +L+ +
Sbjct: 66 GQERFRTITSTYYRGTHGVIVVYDVTSADSFVNVKRWLHEIDQNCDVVNR-----ILVGN 120
Query: 361 KCDLPDRQ-VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D P+R+ VE + + Q + E S+KE++ +E+ N + +++ K+ + +
Sbjct: 121 KNDCPERKVVETGDAQRFADQMG-IKLFETSAKENINVEEMFNEITRQVLHQKKETQAKL 179
Query: 420 ERKSSIRLSEETLRDDQPK 438
+++ ET++ D+ K
Sbjct: 180 AAQTN-----ETIKLDKHK 193
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS VGK+S + F N F Y T+GVDF +
Sbjct: 8 LFKLLIIGDSGVGKSSLLLRFADNTFSGTYITTIGVDFKIR 48
>gi|149728237|ref|XP_001488993.1| PREDICTED: ras-related protein Rab-43-like [Equus caballus]
Length = 212
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 99/162 (61%), Gaps = 8/162 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWDTA 75
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D+T R SF SV W D+ G+ + LL+ +
Sbjct: 76 GQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA----GSNIVQLLIGN 131
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL + R+V + E +++ Y+ + IE S+K+ +E++
Sbjct: 132 KSDLSELREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 173
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWD 73
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K++++GD++VGKT VQ F F + +T+GVDF+ K L
Sbjct: 18 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTL 60
>gi|91086487|ref|XP_970606.1| PREDICTED: similar to rab 19, 41 and [Tribolium castaneum]
gi|270009806|gb|EFA06254.1| hypothetical protein TcasGA2_TC009113 [Tribolium castaneum]
Length = 221
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 100/164 (60%), Gaps = 11/164 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD GKT VQ F F++ + NT+GVDFS K + G+ VKLQIWD A
Sbjct: 22 FKIVLIGDCGTGKTCIVQRFKNGTFIERHGNTIGVDFSMKTV---MVDGKKVKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G II++D+T R SF SV +W ++ +G+ + L+ +
Sbjct: 79 GQERFRTITQSYYRSANGVIIVYDITKRSSFLSVARWVEEVRRY----SGSSVLLALVGN 134
Query: 361 KCDLPD-RQVEINEIEAVCHQY--NFMSWIEVSSKEHLMIEDSM 401
K D+ R+VE E EA+C QY + +E S+K++ IE++
Sbjct: 135 KADMESLREVEFEEAEAMC-QYMPEVLFVLEASAKDNSNIEEAF 177
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD GKT VQ F F++ + NT+GVDFS K + G+ VKLQIWD
Sbjct: 22 FKIVLIGDCGTGKTCIVQRFKNGTFIERHGNTIGVDFSMKTV---MVDGKKVKLQIWD 76
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
P + + KI++IGD GKT VQ F F++ + NT+GVDFS K
Sbjct: 13 PAEDTFDFLFKIVLIGDCGTGKTCIVQRFKNGTFIERHGNTIGVDFSMK 61
>gi|348523125|ref|XP_003449074.1| PREDICTED: ras-related protein Rab-3A-like [Oreochromis niloticus]
Length = 219
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 101/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 22 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN SF +V W + + DN + LL+ +
Sbjct: 79 GQERYRTITTAYYRGAMGFILMYDITNEDSFNAVQDWSTQIKTYS-WDNAQV---LLVGN 134
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E ++ + E S+K+++ ++ + LVD IIC K E
Sbjct: 135 KCDMEDERVVSSERGRQLSEHLGFEFFEASAKDNINVKQTFERLVD-IICEKMSE 188
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 12 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 63
>gi|343472019|emb|CCD15702.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 220
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 106/216 (49%), Gaps = 27/216 (12%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+S + I+I GDS VGKTS + +V KF + YK T+G DF TK + G+ V
Sbjct: 1 MSATKRQLLKIIILGDSGVGKTSLMHQYVNKKFDNRYKATIGADFLTKDID---VDGKLV 57
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
LQIWD AGQ+R+ + +Y+ +D C+++FD+T SF + W + ++ L +
Sbjct: 58 TLQIWDTAGQERFQSLGSAFYRGADACVLVFDITQSDSFSHINSWLEEFRAQAGLRD--- 114
Query: 353 LPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMS------------------WIEVSSKE 393
+L+ +K DL D RQV EA C + S + E S+K+
Sbjct: 115 --SVLIGNKSDLADRRQVASRTAEAWCESLSNRSESGQVQGGARTGEVEQIMYFEASAKD 172
Query: 394 HLMIEDSMNFLVDRIICSKRMEEEAVERKSSIRLSE 429
++ +ED+ + + K EE V SI+L +
Sbjct: 173 NVSVEDAFLAVARSALAKKATAEEDVALPQSIKLGQ 208
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
I+I GDS VGKTS + +V KF + YK T+G DF TK + G+ V LQIWD
Sbjct: 11 IIILGDSGVGKTSLMHQYVNKKFDNRYKATIGADFLTKDID---VDGKLVTLQIWD 63
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 30/41 (73%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+LKI+++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 8 LLKIIILGDSGVGKTSLMHQYVNKKFDNRYKATIGADFLTK 48
>gi|440298549|gb|ELP91180.1| rab17, putative [Entamoeba invadens IP1]
Length = 205
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 103/182 (56%), Gaps = 7/182 (3%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
I T I++ G+ GK + ++ + F Y+ T+GVDF+ K ++ GG+ ++L++W
Sbjct: 6 ILTLKIIVIGEPDAGKINVIRRYCHGVFEPTYRATIGVDFAVKFVT---IGGKELQLRMW 62
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D+AGQ++YI M+RVYY+++ G +I+++ T+ S E+ +WK DLD+K L NG +P +L
Sbjct: 63 DVAGQEKYIGMTRVYYKDAQGAVILYNTTSEYSLEATNKWKEDLDTKVSL-NGEPIPAIL 121
Query: 358 LASKCDL---PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
+ + +L R N ++ Q + + +SSK D M LV I+ +
Sbjct: 122 VGNNSELLTNEQRSQAENSLKQKVLQQRYTTGALISSKGDPKFNDVMEKLVRSILIKINV 181
Query: 415 EE 416
E+
Sbjct: 182 ED 183
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 166 IQTPSYL---ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 222
+++P L I++ G+ GK + ++ + F Y+ T+GVDF+ K ++ GG+ +
Sbjct: 1 MESPDILTLKIIVIGEPDAGKINVIRRYCHGVFEPTYRATIGVDFAVKFVT---IGGKEL 57
Query: 223 KLQIWDI 229
+L++WD+
Sbjct: 58 QLRMWDV 64
>gi|296210478|ref|XP_002751979.1| PREDICTED: ras-related protein Rab-19 [Callithrix jacchus]
Length = 217
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 110/217 (50%), Gaps = 22/217 (10%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L G+ VK+Q+WD A
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLD---IDGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT +FES+ W H+++ A L +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRWSTFESIPHWIHEIEKY----GAANLVIMLIGN 130
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL + R V + + +Y ++ +E S+KE I++ M +E +
Sbjct: 131 KCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVL----------MAKELI 180
Query: 420 ERKSSIRLSEETLR----DDQPKKLVPADKVSTYCWC 452
R S E L D P + + T+C C
Sbjct: 181 ARNSLHLYGESALNGLPLDSSPVVMAQSPSEKTHCTC 217
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L G+ VK+Q+WD
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLD---IDGKKVKMQVWD 72
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGDS VGKT VQ F + + +NT+GVDF+ + L
Sbjct: 17 LFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSL 59
>gi|289743677|gb|ADD20586.1| Ras-related protein Rab-7 [Glossina morsitans morsitans]
Length = 208
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 107/195 (54%), Gaps = 5/195 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS+VGKTS + +V +F + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSSVGKTSIMNQYVSKRFSNQYKATIGADFCTKEVV---LDDRVVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T+ SF+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTSPNSFKNLDSWRDEFLIQASPRDPEHFPFVVLGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
D+ +RQV + C N + + E S+KE L +E + + + + E E
Sbjct: 128 DMDNRQVSTRRAQQWCQSKNDLPYFETSAKEGLNVELAFQTIAKNALAQEAEVELYNEFP 187
Query: 423 SSIRLSEETLRDDQP 437
IRL+ + R+++P
Sbjct: 188 DQIRLNAD--RNNRP 200
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S +++LK++++GDS+VGKTS + +V +F + YK T+G DF TK
Sbjct: 3 SRKKSLLKVIILGDSSVGKTSIMNQYVSKRFSNQYKATIGADFCTK 48
>gi|240849471|ref|NP_001155484.1| ras-related protein Rab-7-like [Acyrthosiphon pisum]
gi|239791100|dbj|BAH72062.1| ACYPI002607 [Acyrthosiphon pisum]
Length = 209
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 101/188 (53%), Gaps = 13/188 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS+VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSSVGKTSLMNQYVNKKFTNQYKATIGADFLTKEV---MVDDRIVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T+ SF+S+ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTSPGSFKSLDGWRDEFLIQASPSDPDHFPFVVLGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL +R V + C N + + E S+KE + +E + K + A+ ++
Sbjct: 128 DLDNRAVSTKRAQQWCQSKNGLPYFETSAKEAVNVEQAF----------KTIARNALAQE 177
Query: 423 SSIRLSEE 430
S + L E
Sbjct: 178 SDVELYNE 185
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS+VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSSVGKTSLMNQYVNKKFTNQYKATIGADFLTKEV---MVDDRIVTMQIWD 63
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 32/43 (74%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ +LK++++GDS+VGKTS + +V KF + YK T+G DF TK
Sbjct: 6 KVLLKVIILGDSSVGKTSLMNQYVNKKFTNQYKATIGADFLTK 48
>gi|289741231|gb|ADD19363.1| Rab protein 10 [Glossina morsitans morsitans]
Length = 204
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 104/170 (61%), Gaps = 9/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELR---GKKIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSFE++V+W ++D D + ++L +
Sbjct: 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANED----VEKMILGN 122
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCD+ D++V E EA+ ++ + ++E S+K ++ IE + L + I+
Sbjct: 123 KCDMADKRVVSKERGEAIAREHG-IRFMETSAKSNINIERAFCELAEAIL 171
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELR---GKKIKLQIWD 64
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS VGKT + F + F + +T+G+DF K
Sbjct: 9 LFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIK 49
>gi|281347015|gb|EFB22599.1| hypothetical protein PANDA_006037 [Ailuropoda melanoleuca]
Length = 196
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 99/162 (61%), Gaps = 8/162 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 3 FQLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWDTA 59
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D+T R SF SV W D+ G+ + LL+ +
Sbjct: 60 GQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA----GSNIVQLLIGN 115
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL + R+V + E +++ Y+ + IE S+K+ +E++
Sbjct: 116 KSDLSELREVPLAEAQSLVEHYDILCAIETSAKDSSNVEEAF 157
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
P L+L+ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 2 PFQLVLV-GDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWD 57
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+++++GD++VGKT VQ F F + +T+GVDF+ K L
Sbjct: 3 FQLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTL 44
>gi|363743053|ref|XP_001235016.2| PREDICTED: ras-related protein Rab-7b-like [Gallus gallus]
Length = 207
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 110/197 (55%), Gaps = 10/197 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I+I G VGKTS + +V F ++Y+ T+G TK+++ K P+KLQIWD GQ
Sbjct: 18 IIIIGALGVGKTSLLHQYVHKTFYEDYRTTLGASILTKVVAVDK---TPLKLQIWDTGGQ 74
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ M +Y+ SDGC++ FD+T+ +SFE++ W+ D K I + P ++L +K
Sbjct: 75 ERFRSMVSTFYKGSDGCMLAFDVTDMESFEALDNWRDDFLEKVIPRDHD-FPMVVLGNKI 133
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL DRQV A C + + + + EVS+K ++ + + L + + + + E+
Sbjct: 134 DLCDRQVSKEIASAWCKEKD-IPYFEVSAKNNINVAQAFETLAKQALTTYKGIYESY-LT 191
Query: 423 SSIRLSEETLRDDQPKK 439
SI+L+ E D+P K
Sbjct: 192 DSIKLTPE----DKPTK 204
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
I+I G VGKTS + +V F ++Y+ T+G TK+++ K P+KLQIWD
Sbjct: 18 IIIIGALGVGKTSLLHQYVHKTFYEDYRTTLGASILTKVVAVDK---TPLKLQIWD 70
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 154
LKI++IG VGKTS + +V F ++Y+ T+G TK+++ K
Sbjct: 16 LKIIIIGALGVGKTSLLHQYVHKTFYEDYRTTLGASILTKVVAVDK 61
>gi|157167495|ref|XP_001654824.1| ras-related protein Rab-10, putative [Aedes aegypti]
gi|157167497|ref|XP_001654825.1| ras-related protein Rab-10, putative [Aedes aegypti]
gi|108882449|gb|EAT46674.1| AAEL002155-PA [Aedes aegypti]
gi|403182468|gb|EJY57406.1| AAEL002155-PB [Aedes aegypti]
Length = 204
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 104/170 (61%), Gaps = 9/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTIELR---GKKIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSF+++V+W ++D D + ++L +
Sbjct: 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIVKWLRNIDEHANED----VEKMILGN 122
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCD+ D R V I E++ +++ + ++E S+K ++ IE + L + I+
Sbjct: 123 KCDMTDKRVVSIERGESIAREHD-IRFMETSAKANINIERAFRELAEAIL 171
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTIELR---GKKIKLQIWD 64
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS VGKT + F + F + +T+G+DF K +
Sbjct: 9 LFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTI 51
>gi|390343455|ref|XP_794320.3| PREDICTED: ras-related protein Rab-43-like [Strongylocentrotus
purpuratus]
Length = 220
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 116/196 (59%), Gaps = 9/196 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD+ VGKT VQ F FL+ +T+GVDF+ K L+ G+ VKLQ+WD A
Sbjct: 27 FKIVLIGDAGVGKTCVVQRFKSGTFLEKQHSTIGVDFTMKTLN---IDGKKVKLQVWDTA 83
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G II +D+T +++F +V +W D+ G + C+LL +
Sbjct: 84 GQERFRTITQSYYRSANGVIIAYDITKKETFCNVPRWIEDVQKYA----GGSVICILLGN 139
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K DL R+V+ + +A+ + + IEVS+K+ I+++ + + + + + E ++
Sbjct: 140 KKDLEQIREVDYEDAQALSSHHAMLECIEVSAKDSTNIDETF-WKLGQELKRRHGGESSL 198
Query: 420 ERKSSIRLSEETLRDD 435
+ + +LS T R D
Sbjct: 199 AKGETSKLSLNTRRVD 214
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 164 SPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 221
S +T YL I++ GD+ VGKT VQ F FL+ +T+GVDF+ K L+ G+
Sbjct: 18 SSDETFDYLFKIVLIGDAGVGKTCVVQRFKSGTFLEKQHSTIGVDFTMKTLN---IDGKK 74
Query: 222 VKLQIWD 228
VKLQ+WD
Sbjct: 75 VKLQVWD 81
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ KI++IGD+ VGKT VQ F FL+ +T+GVDF+ K L+
Sbjct: 26 LFKIVLIGDAGVGKTCVVQRFKSGTFLEKQHSTIGVDFTMKTLN 69
>gi|363744183|ref|XP_003642996.1| PREDICTED: ras-related protein Rab-3C [Gallus gallus]
Length = 227
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 112/194 (57%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 87
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 88 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 143
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D +V E + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 144 KCDMEDERVIFTERGKHLAEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 199
Query: 420 ERKSSIRLSEETLR 433
E SI ++ R
Sbjct: 200 ETDPSITAGKQNTR 213
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 85
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 72
>gi|383854352|ref|XP_003702685.1| PREDICTED: 28S ribosomal protein S5, mitochondrial-like [Megachile
rotundata]
Length = 630
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 102/173 (58%), Gaps = 15/173 (8%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK--LLSHKKYGGRPVKLQIWD 298
+ I++ GD GKT VQ F F++ + NT+GVDFS K L+ KK +KLQIWD
Sbjct: 432 FKIVLIGDCGTGKTCVVQRFRSGTFIERHGNTIGVDFSMKTVLIDDKK-----IKLQIWD 486
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
AGQ+R+ +++ YY++++G I+++D+T R +F S+ W ++ + + +L+
Sbjct: 487 TAGQERFRTITQSYYRSANGVIVVYDITKRSTFLSLQHWVEEVRRY----TSSHVLLVLV 542
Query: 359 ASKCDLPD-RQVEINEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+KCDL D R+VE E EA+C QY + +E S+KE+ I+ +L +
Sbjct: 543 GNKCDLEDLREVEKEEAEALC-QYLPEVLQVVETSAKENTNIDSIFFYLASEL 594
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 7/60 (11%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK--LLSHKKYGGRPVKLQIWD 228
+ I++ GD GKT VQ F F++ + NT+GVDFS K L+ KK +KLQIWD
Sbjct: 432 FKIVLIGDCGTGKTCVVQRFRSGTFIERHGNTIGVDFSMKTVLIDDKK-----IKLQIWD 486
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ KI++IGD GKT VQ F F++ + NT+GVDFS K
Sbjct: 431 LFKIVLIGDCGTGKTCVVQRFRSGTFIERHGNTIGVDFSMK 471
>gi|224090593|ref|XP_002187909.1| PREDICTED: ras-related protein Rab-3C [Taeniopygia guttata]
Length = 227
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 114/200 (57%), Gaps = 14/200 (7%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 87
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN SF +V W + + DN + +L+ +
Sbjct: 88 GQERYRTITTAYYRGAMGFILMYDITNEDSFNAVQDWSTQIKTYS-WDNAQV---ILVGN 143
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D +V E + + Q F + E S+KE++ ++ + LVD IIC K E++
Sbjct: 144 KCDMEDERVIFTERGKHLAEQLGF-EFFETSAKENINVKQTFERLVD-IICDKM--SESL 199
Query: 420 ERKSSIRLSEET--LRDDQP 437
E +I S + L+D P
Sbjct: 200 EMNPTIAASNQNTQLKDTPP 219
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 72
>gi|148223285|ref|NP_001087006.1| RAB7, member RAS oncogene family [Xenopus laevis]
gi|50414980|gb|AAH77884.1| Rab7-prov protein [Xenopus laevis]
Length = 207
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 90/159 (56%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV CH N + + E S+KE + +E +
Sbjct: 128 DLENRQVTTKRAHVWCHSKNNIPYFETSAKEAINVEQAF 166
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTK 48
>gi|395847163|ref|XP_003796253.1| PREDICTED: ras-related protein Rab-43 [Otolemur garnettii]
Length = 212
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 99/162 (61%), Gaps = 8/162 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLDIQ---GKRVKLQIWDTA 75
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D+T R SF SV W D+ G+ + LL+ +
Sbjct: 76 GQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA----GSNIVQLLIGN 131
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL + R+V + E +++ Y+ + IE S+K+ +E++
Sbjct: 132 KSDLRELREVTLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 173
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLDIQ---GKRVKLQIWD 73
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K++++GD++VGKT VQ F F + +T+GVDF+ K L
Sbjct: 18 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTL 60
>gi|432850525|ref|XP_004066796.1| PREDICTED: ras-related protein Rab-9A-like [Oryzias latipes]
Length = 200
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 102/189 (53%), Gaps = 4/189 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GD VGK+S + +V NKF + +T+GV+F K L + GR V LQIWD AGQ
Sbjct: 9 VILLGDGGVGKSSLMNRYVTNKFDSHLFHTIGVEFLNKEL---EVDGRRVTLQIWDTAGQ 65
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ SD C++ F L + +SF ++ WK + + + P L+L +K
Sbjct: 66 ERFRSLRTPFYRGSDCCLLTFSLDDGQSFSNLANWKKEFSFYADVKDADHFPFLVLGNKL 125
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
D+P RQV + C + + + E S+K+ + + V R++ S ++ +
Sbjct: 126 DVPQRQVSGEDARQWCRENGGLPYFETSAKDATNVASAFEEAVRRVLASDDRDDHVIH-A 184
Query: 423 SSIRLSEET 431
++RL ++T
Sbjct: 185 DTVRLQKKT 193
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ GD VGK+S + +V NKF + +T+GV+F K L + GR V LQIWD
Sbjct: 9 VILLGDGGVGKSSLMNRYVTNKFDSHLFHTIGVEFLNKEL---EVDGRRVTLQIWD 61
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+LK++++GD VGK+S + +V NKF + +T+GV+F K L
Sbjct: 5 ALLKVILLGDGGVGKSSLMNRYVTNKFDSHLFHTIGVEFLNKEL 48
>gi|66730539|ref|NP_001019502.1| ras-related protein Rab-43 [Rattus norvegicus]
gi|81887426|sp|Q53B90.1|RAB43_RAT RecName: Full=Ras-related protein Rab-43
gi|50898338|gb|AAT86135.1| Ras-related protein RAB43 [Rattus norvegicus]
Length = 210
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 101/170 (59%), Gaps = 8/170 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQ---GKRVKLQIWDTA 73
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D++ R +F SV W D+ G+ + LL+ +
Sbjct: 74 GQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYA----GSNIVQLLIGN 129
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
K DL D R+V + E +++ Y+ + IE S+K+ +E++ + +I
Sbjct: 130 KSDLADLREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATELI 179
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD++VGKT VQ F F +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQ---GKRVKLQIWD 71
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 100 PRPSDAET----VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P P D + + K++++GD++VGKT VQ F F +T+GVDF+ K L
Sbjct: 4 PGPGDQDEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTL 58
>gi|291235020|ref|XP_002737444.1| PREDICTED: Rab-protein 3-like isoform 1 [Saccoglossus kowalevskii]
gi|291235022|ref|XP_002737445.1| PREDICTED: Rab-protein 3-like isoform 2 [Saccoglossus kowalevskii]
Length = 219
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 105/176 (59%), Gaps = 10/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + VKLQIWD A
Sbjct: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR---NDKRVKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF++V W + + DN + +L+ +
Sbjct: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFQAVQDWSTQIKTYS-WDNAQV---ILVGN 134
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D R V ++ + + Q + + E S+KE++ ++ + LVD IIC K E
Sbjct: 135 KCDMEDERVVSVDRGKQLSDQLG-LEFFETSAKENINVKQTFERLVD-IICDKMSE 188
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + VKLQIWD
Sbjct: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR---NDKRVKLQIWD 76
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 63
>gi|117939031|dbj|BAF36669.1| Small G Protein RAB [Pyrsonympha grandis]
gi|117939033|dbj|BAF36670.1| Small G Protein RAB [Pyrsonympha grandis]
gi|117939035|dbj|BAF36671.1| Small G Protein RAB [Pyrsonympha grandis]
gi|117939037|dbj|BAF36672.1| Small G Protein RAB [Pyrsonympha grandis]
Length = 195
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 111/201 (55%), Gaps = 10/201 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GDS VGKT + F NKF YK T+G DF TK + R V +QIWD AG
Sbjct: 2 VVVLGDSGVGKTCLINQFALNKFSAQYKATIGADFLTKEVV---VDNRQVTMQIWDTAGL 58
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D CI+++D+T K+F+++ WK + + + P +LL +K
Sbjct: 59 ERFQSLGVAFYRGADACILVYDVTAPKTFDNLDGWKEEFLFQGSPQDPDNFPFMLLGNKI 118
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
DL + R V+ + E CHQ + + E S+K++ +E + + RI S+ +E+ +
Sbjct: 119 DLEEQRVVQAKKAENWCHQKGDIKYFETSAKDNSNVEQAF-LEIARIGLSRESQEDDIP- 176
Query: 422 KSSIRLSEETLRDDQPKKLVP 442
SSI ++E+T +PK P
Sbjct: 177 TSSIAIAEDT----KPKSKCP 193
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ GDS VGKT + F NKF YK T+G DF TK + R V +QIWD
Sbjct: 2 VVVLGDSGVGKTCLINQFALNKFSAQYKATIGADFLTKEVV---VDNRQVTMQIWD 54
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
K++V+GDS VGKT + F NKF YK T+G DF TK
Sbjct: 1 KVVVLGDSGVGKTCLINQFALNKFSAQYKATIGADFLTK 39
>gi|297717321|ref|XP_002834898.1| PREDICTED: ras-related protein Rab-43-like [Pongo abelii]
Length = 212
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 110/192 (57%), Gaps = 18/192 (9%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F FL+ +T+GVDF+ K+L + G+ VKLQIWD A
Sbjct: 19 FKLVLVGDASVGKTCMVQRFKTGAFLEGQGSTIGVDFTMKMLEIQ---GKRVKLQIWDTA 75
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ + +++ YY++++G I+ +D+T R SF SV W D+ G+ + LL+ +
Sbjct: 76 GQKWFRTITQRYYRSANGAILAYDITKRSSFLSVPHWIEDVRKY----TGSNIVQLLIRN 131
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K DL + R+V + E +++ Y + IE S+K+ +E++ FL R+ E +
Sbjct: 132 KSDLSELREVSLAEAQSLAEHYEILCAIETSAKDSSKVEEA--FL--------RVATELI 181
Query: 420 ERKSSIRLSEET 431
R S SE++
Sbjct: 182 MRHGSPLFSEKS 193
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD++VGKT VQ F FL+ +T+GVDF+ K+L + G+ VKLQIWD
Sbjct: 19 FKLVLVGDASVGKTCMVQRFKTGAFLEGQGSTIGVDFTMKMLEIQ---GKRVKLQIWD 73
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K++++GD++VGKT VQ F FL+ +T+GVDF+ K+L
Sbjct: 18 LFKLVLVGDASVGKTCMVQRFKTGAFLEGQGSTIGVDFTMKML 60
>gi|67472102|ref|XP_651915.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|50978608|dbj|BAD34971.1| EhRab7D protein [Entamoeba histolytica]
gi|56468706|gb|EAL46529.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|449709825|gb|EMD49016.1| Rab family gtpase [Entamoeba histolytica KU27]
Length = 204
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 104/193 (53%), Gaps = 7/193 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ++ GDS VGKTS + +V N+F D YK T+G DF K ++ G LQIWD A
Sbjct: 8 FKAILIGDSGVGKTSLINRYVNNQFSDVYKATIGSDFLIKPVT---VNGAQYTLQIWDTA 64
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +RY C+ +Y+ SD C++ FD+TNR SF + +WK++ N A +P ++ +
Sbjct: 65 GHERYSCVVTTFYRGSDCCVLCFDVTNRDSFNHLEKWKNEFIDGANATNPASIPIYVVGN 124
Query: 361 K--CDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
K C+ R+V + C + N + E S+ + D L + ++ S+R +EE
Sbjct: 125 KIDCEPNKREVSQEQAREWC-KLNGHKYFETSAMNAENVTDLFTTLAEDVV-SRREDEEE 182
Query: 419 VERKSSIRLSEET 431
E+ + I + +++
Sbjct: 183 PEKPAPIIIQKQS 195
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ++ GDS VGKTS + +V N+F D YK T+G DF K ++ G LQIWD
Sbjct: 8 FKAILIGDSGVGKTSLINRYVNNQFSDVYKATIGSDFLIKPVT---VNGAQYTLQIWD 62
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K ++IGDS VGKTS + +V N+F D YK T+G DF K
Sbjct: 6 ALFKAILIGDSGVGKTSLINRYVNNQFSDVYKATIGSDFLIK 47
>gi|114052380|ref|NP_001040003.1| ras-related protein Rab-15 [Bos taurus]
gi|116255979|sp|Q1RMR4.1|RAB15_BOVIN RecName: Full=Ras-related protein Rab-15
gi|92098359|gb|AAI14761.1| RAB15, member RAS onocogene family [Bos taurus]
gi|296482998|tpg|DAA25113.1| TPA: RAB15, member RAS onocogene family [Bos taurus]
Length = 212
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 120/213 (56%), Gaps = 10/213 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + + G V++QIWD A
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI---EVDGIKVRIQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY +++ YY+ + G +++D+++ +S++ +++W D+D + +L+ +
Sbjct: 66 GQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA----PEGVQKILIGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D RQV + + + +Y M + E S+ +L I++S L + ++ + R E E +
Sbjct: 122 KADEEQKRQVGREQGQQLAREYG-MDFYETSACTNLNIKESFTRLTELVLQAHRKELEGL 180
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
+++ L+ L +D+ K PA+ T CWC
Sbjct: 181 RTRANHELALAELEEDEGKPEGPANSSKT-CWC 212
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + + G V++QIWD
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI---EVDGIKVRIQIWD 63
Score = 41.6 bits (96), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ + ++L+IGDS VGKT + F N+F ++ +T+GVDF K +
Sbjct: 6 DVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI 50
>gi|86476069|ref|NP_001034483.1| ras-related protein Rab-43 isoform a [Mus musculus]
gi|81914382|sp|Q8CG50.1|RAB43_MOUSE RecName: Full=Ras-related protein Rab-43
gi|26986192|emb|CAD58914.1| Ras-related protein Rab [Mus musculus]
gi|112293049|dbj|BAF02902.1| Rab41 [Mus musculus]
gi|148666805|gb|EDK99221.1| RIKEN cDNA 1810048P08, isoform CRA_c [Mus musculus]
Length = 210
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 101/170 (59%), Gaps = 8/170 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQ---GKRVKLQIWDTA 73
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D++ R +F SV W D+ G+ + LL+ +
Sbjct: 74 GQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYA----GSNIVQLLIGN 129
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
K DL D R+V + E +++ Y+ + IE S+K+ +E++ + +I
Sbjct: 130 KSDLADFREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATELI 179
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD++VGKT VQ F F +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQ---GKRVKLQIWD 71
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 100 PRPSDAET----VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P P D + + K++++GD++VGKT VQ F F +T+GVDF+ K L
Sbjct: 4 PGPGDQDEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTL 58
>gi|284794146|pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
gi|284794147|pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
gi|284794148|pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
gi|284794149|pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
gi|284794150|pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
D +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|242089159|ref|XP_002440412.1| hypothetical protein SORBIDRAFT_09g000550 [Sorghum bicolor]
gi|241945697|gb|EES18842.1| hypothetical protein SORBIDRAFT_09g000550 [Sorghum bicolor]
Length = 205
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 110/188 (58%), Gaps = 10/188 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS+VGK+ + F + F+D Y +T+GVDF + + G+ VKLQIWD A
Sbjct: 11 FKLLLIGDSSVGKSCLLLRFADDSFVDTYISTIGVDFKIRTVD---LDGKTVKLQIWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G II++D+T+ +SF ++ QW ++D + DN + LL+ +
Sbjct: 68 GQERFRTITSSYYRGAHGIIIVYDVTDMESFNNIKQWLSEID-RYASDN---VCKLLVGN 123
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE-AV 419
KCDL D +V E + +IE S+KE + +E++ FL KRM + V
Sbjct: 124 KCDLVDSKVVETEKAKAFADSLGIPFIETSAKESINVEEA--FLTMSSEIKKRMATQPTV 181
Query: 420 ERKSSIRL 427
ER+ ++ +
Sbjct: 182 ERRPTVHV 189
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS+VGK+ + F + F+D Y +T+GVDF + + G+ VKLQIWD
Sbjct: 11 FKLLLIGDSSVGKSCLLLRFADDSFVDTYISTIGVDFKIRTVD---LDGKTVKLQIWD 65
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS+VGK+ + F + F+D Y +T+GVDF +
Sbjct: 10 LFKLLLIGDSSVGKSCLLLRFADDSFVDTYISTIGVDFKIR 50
>gi|431913720|gb|ELK15210.1| Ras-related protein Rab-43 [Pteropus alecto]
Length = 212
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 99/162 (61%), Gaps = 8/162 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQSSTIGVDFTMKTLEIQ---GKRVKLQIWDTA 75
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D+T R SF SV W D+ G+ + LL+ +
Sbjct: 76 GQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA----GSNIVQLLIGN 131
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL + R+V + E +++ Y+ + IE S+K+ +E++
Sbjct: 132 KSDLGELREVPLAEAQSLAEHYDILCAIETSAKDSNNVEEAF 173
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQSSTIGVDFTMKTLEIQ---GKRVKLQIWD 73
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K++++GD++VGKT VQ F F + +T+GVDF+ K L
Sbjct: 18 LFKLVLVGDASVGKTCVVQRFKTGAFSERQSSTIGVDFTMKTL 60
>gi|313220927|emb|CBY31762.1| unnamed protein product [Oikopleura dioica]
gi|313226508|emb|CBY21653.1| unnamed protein product [Oikopleura dioica]
Length = 216
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 105/187 (56%), Gaps = 12/187 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S VGKTS++ + + + + +TVG+DF K + + VKLQIWD A
Sbjct: 20 FKLLIIGNSAVGKTSFLFRYADDSYTSAFVSTVGIDFKVKTVQR---NNKRVKLQIWDTA 76
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN SF +V W + + D+ +L+A+
Sbjct: 77 GQERYRTITTAYYRGAMGFILMYDITNEDSFNAVQDWATQIKTYS-WDSA---KVMLVAN 132
Query: 361 KCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME--EE 417
K D+ +R V E + Q F + E S+KE+L + S + LVD +IC K E EE
Sbjct: 133 KADMENERVVSTERGEELARQLGF-DFFETSAKENLNVAQSFDRLVD-VICDKMAESVEE 190
Query: 418 AVERKSS 424
+ + SS
Sbjct: 191 SAQAASS 197
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S VGKTS++ + + + + +TVG+DF K +
Sbjct: 19 MFKLLIIGNSAVGKTSFLFRYADDSYTSAFVSTVGIDFKVKTV 61
>gi|410907910|ref|XP_003967434.1| PREDICTED: ras-related protein Rab-19-like [Takifugu rubripes]
Length = 384
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 105/195 (53%), Gaps = 19/195 (9%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT VQ F F++ +NT+GVDF+ + L G+ VK+Q+WD A
Sbjct: 183 FKIILVGDSNVGKTCVVQSFKSGIFMEKQQNTIGVDFTVRTLD---IDGKKVKMQVWDTA 239
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ G ++ +D+T R +FESV W +++ A + +L+ +
Sbjct: 240 GQERFRTITQSYYRSAHGAMVAYDITRRPTFESVSHWIREVEHY----GAASVVLILIGN 295
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K DL RQV + + ++ +E S+KE +E + + ++
Sbjct: 296 KSDLQAQRQVLFEDACTLAENNGALAVLETSAKEAQNVEAAFTLMARELLA--------- 346
Query: 420 ERKSSIRLSEETLRD 434
++ ++EE LRD
Sbjct: 347 --RNGTNMAEEFLRD 359
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT VQ F F++ +NT+GVDF+ + L G+ VK+Q+WD
Sbjct: 183 FKIILVGDSNVGKTCVVQSFKSGIFMEKQQNTIGVDFTVRTLD---IDGKKVKMQVWD 237
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI+++GDS VGKT VQ F F++ +NT+GVDF+ + L
Sbjct: 182 LFKIILVGDSNVGKTCVVQSFKSGIFMEKQQNTIGVDFTVRTL 224
>gi|402887099|ref|XP_003906942.1| PREDICTED: ras-related protein Rab-43 isoform 1 [Papio anubis]
gi|402887101|ref|XP_003906943.1| PREDICTED: ras-related protein Rab-43 isoform 2 [Papio anubis]
Length = 212
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 98/162 (60%), Gaps = 8/162 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWDTA 75
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D+T R SF SV W D+ G + LL+ +
Sbjct: 76 GQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA----GFNIVQLLIGN 131
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL + R+V + E +++ Y+ + IE S+K+ +E++
Sbjct: 132 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 173
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWD 73
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K++++GD++VGKT VQ F F + +T+GVDF+ K L
Sbjct: 18 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTL 60
>gi|410918967|ref|XP_003972956.1| PREDICTED: ras-related protein Rab-19-like [Takifugu rubripes]
Length = 224
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 99/170 (58%), Gaps = 8/170 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT VQ F F + +NT+GVDFS + + + G+ VK+Q+WD A
Sbjct: 16 FKIILIGDSNVGKTCVVQNFKSGTFSEKQQNTIGVDFSVRTV---EIEGKKVKIQVWDTA 72
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ G +I +D+T +F+SV W +++ L + + +L+ +
Sbjct: 73 GQERFRTITQSYYRSAHGAVIAYDITRHATFDSVSHWISEVE----LYGASNVTLVLIGN 128
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL +RQV E + ++ +E S+KE ++++ + ++
Sbjct: 129 KCDLEEERQVTFEEACNLAKNKGMLAALETSAKESQNVDEAFMMMARELL 178
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT VQ F F + +NT+GVDFS + + + G+ VK+Q+WD
Sbjct: 16 FKIILIGDSNVGKTCVVQNFKSGTFSEKQQNTIGVDFSVRTV---EIEGKKVKIQVWD 70
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 100 PRPSDA-ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P D+ + + KI++IGDS VGKT VQ F F + +NT+GVDFS + +
Sbjct: 6 PEQDDSFDFLFKIILIGDSNVGKTCVVQNFKSGTFSEKQQNTIGVDFSVRTV 57
>gi|431904482|gb|ELK09865.1| Ras-related protein Rab-15 [Pteropus alecto]
Length = 212
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 120/213 (56%), Gaps = 10/213 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + + G V++QIWD A
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI---EVDGIKVRIQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY +++ YY+ + G +++D+++ +S++ +++W D+D + +L+ +
Sbjct: 66 GQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA----PEGVQKILIGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D RQV + + + +Y M + E S+ +L I++S L + ++ + R E + V
Sbjct: 122 KADEEQKRQVGREQGQQLAKEYG-MDFYETSACTNLNIKESFTRLTELVLQAHRKELDGV 180
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
++S ++ L +D+ K PA+ T CWC
Sbjct: 181 RTRASNEMALAELEEDESKPEGPANSSKT-CWC 212
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + + G V++QIWD
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI---EVDGIKVRIQIWD 63
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ + ++L+IGDS VGKT + F N+F ++ +T+GVDF K +
Sbjct: 6 DVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI 50
>gi|357631591|gb|EHJ79060.1| putative ras-related protein Rab [Danaus plexippus]
Length = 201
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 104/176 (59%), Gaps = 11/176 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+ + F N F +Y T+GVDF + L + G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSCLLLRFADNTFSGSYITTIGVDFKIRTL---EINGERVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+TN +SF +V +W H+++ C + N +L+ +
Sbjct: 66 GQERFRTITSTYYRGTHGVIVVYDVTNGESFANVKRWLHEIEQNCDVVNK-----VLVGN 120
Query: 361 KCDLPDRQVEINE-IEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
K D P R+V + E + +Q N + E S+KE++ +E+ M + +++ ++E
Sbjct: 121 KNDCPSRKVVVTEDAQRFANQMN-IPLFETSAKENINVEE-MFLTITKMVLRSKLE 174
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+ + F N F +Y T+GVDF + L + G VKLQIWD
Sbjct: 9 FKLLIIGDSGVGKSCLLLRFADNTFSGSYITTIGVDFKIRTL---EINGERVKLQIWD 63
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS VGK+ + F N F +Y T+GVDF + L
Sbjct: 8 LFKLLIIGDSGVGKSCLLLRFADNTFSGSYITTIGVDFKIRTL 50
>gi|291235024|ref|XP_002737446.1| PREDICTED: Rab-protein 3-like isoform 3 [Saccoglossus kowalevskii]
Length = 227
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 105/176 (59%), Gaps = 10/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + VKLQIWD A
Sbjct: 30 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRND---KRVKLQIWDTA 86
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF++V W + + DN + +L+ +
Sbjct: 87 GQERYRTITTAYYRGAMGFILMYDVTNEESFQAVQDWSTQIKTYS-WDNAQV---ILVGN 142
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D R V ++ + + Q + + E S+KE++ ++ + LVD IIC K E
Sbjct: 143 KCDMEDERVVSVDRGKQLSDQLG-LEFFETSAKENINVKQTFERLVD-IICDKMSE 196
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + VKLQIWD
Sbjct: 30 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRND---KRVKLQIWD 84
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 29 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 71
>gi|50540426|ref|NP_001002679.1| ras-related protein Rab-3B [Danio rerio]
gi|49899208|gb|AAH75784.1| Zgc:86892 [Danio rerio]
Length = 220
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 102/176 (57%), Gaps = 10/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 25 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR---NNKRIKLQIWDTA 81
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G ++MFD+TNR SF +V W + + DN + +L+ +
Sbjct: 82 GQERYRTITTAYYRGAMGFLLMFDITNRDSFNAVRDWATQIKTYS-WDNAQV---ILVGN 137
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCDL D R + + + + H+ F + E S+K+ + ++ LVD +IC K E
Sbjct: 138 KCDLEDERLIPTEDSQRLAHELGF-QFFEASAKDSINVKQVFECLVD-VICDKMTE 191
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 98 FEPRPSDA-----ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+P DA + + K+L+IG+S+VGKTS++ + + F + +TVG+DF K
Sbjct: 9 LQPSQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVK 64
>gi|115728606|ref|XP_780763.2| PREDICTED: ras-related protein Rab-35-like [Strongylocentrotus
purpuratus]
Length = 204
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 105/179 (58%), Gaps = 11/179 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +Y T+GVDF + + K G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTIDVK---GEKVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+ + +SF +V +W +++D C + +L+ +
Sbjct: 66 GQERFRTITSTYYRGTHGVIVVYDVCSAESFVNVKRWLYEIDQNC-----EDVSRILVGN 120
Query: 361 KCDLPDRQ-VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
K D P+R+ VE + + Q N + E S+KE++ +E+ N + ++ +++E +A
Sbjct: 121 KNDAPERKVVETEDAQKFAEQMNIQLY-ETSAKENINVEEMFNGIT-ALVLKQKLENQA 177
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F +Y T+GVDF + + K G VKLQIWD
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTIDVK---GEKVKLQIWD 63
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 153
+ K+L+IGDS VGK+S + F N F +Y T+GVDF + + K
Sbjct: 8 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTIDVK 53
>gi|195042188|ref|XP_001991383.1| GH12621 [Drosophila grimshawi]
gi|193901141|gb|EDW00008.1| GH12621 [Drosophila grimshawi]
Length = 204
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 105/170 (61%), Gaps = 9/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELR---GKKIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSFE++V+W ++D D + ++L +
Sbjct: 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANED----VEKMILGN 122
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCD+ D++V E EA+ +++ + ++E S+K ++ IE + L + I+
Sbjct: 123 KCDMTDKRVVNKERGEAIAREHS-IRFMETSAKSNINIERAFCELAEAIL 171
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELR---GKKIKLQIWD 64
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS VGKT + F + F + +T+G+DF K
Sbjct: 9 LFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIK 49
>gi|195448332|ref|XP_002071611.1| GK25049 [Drosophila willistoni]
gi|194167696|gb|EDW82597.1| GK25049 [Drosophila willistoni]
Length = 204
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 104/170 (61%), Gaps = 9/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELR---GKKIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSFE++V+W ++D D + ++L +
Sbjct: 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANED----VEKMILGN 122
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCD+ D++V E EA+ ++ + ++E S+K ++ IE + L + I+
Sbjct: 123 KCDMTDKRVVSKERGEAIAREHG-IRFMETSAKSNINIERAFCELAEAIL 171
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELR---GKKIKLQIWD 64
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS VGKT + F + F + +T+G+DF K
Sbjct: 9 LFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIK 49
>gi|117939081|dbj|BAF36694.1| Small G Protein RAB [Symbiotic protist of Reticulitermes speratus]
Length = 196
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 111/201 (55%), Gaps = 9/201 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GDS VGKT + F NKF YK T+G DF TK + R V +QIWD AG
Sbjct: 2 VVVLGDSGVGKTCLINQFALNKFSAQYKATIGADFLTKEVV---VDNRQVTMQIWDTAGL 58
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D CI+++D+T K+FE++ WK + + + P +LL +K
Sbjct: 59 ERFQSLGVAFYRGADACILVYDVTAPKTFENLDGWKEEFLFQGSPQDPDNFPFMLLGNKI 118
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
DL + R V+ + E CHQ + + E S+K++ +E + + RI S+ ++E+ +
Sbjct: 119 DLEESRVVQAKKAENWCHQKGDIKYFETSAKDNSNVEQAF-LEIARIGLSREVQEDDIP- 176
Query: 422 KSSIRLSEETLRDDQPKKLVP 442
SSI + +E+ + PK P
Sbjct: 177 TSSIVVQDESQK---PKSKCP 194
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
K++V+GDS VGKT + F NKF YK T+G DF TK
Sbjct: 1 KVVVLGDSGVGKTCLINQFALNKFSAQYKATIGADFLTK 39
>gi|348579502|ref|XP_003475518.1| PREDICTED: ras-related protein Rab-19-like [Cavia porcellus]
Length = 217
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GDS VGKT VQ F + + +NT+GVDF+ + L G+ VK+Q+WD A
Sbjct: 18 FKVILIGDSNVGKTCVVQHFRSGVYTETQQNTIGVDFTVRSLD---IDGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT R +FESV W H+++ A L +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEVEKY----GAANLVIMLIGN 130
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
K DL R V + + ++ ++ +E S+KE I++ + ++ R++
Sbjct: 131 KSDLWQQRHVLFEDACTLAEKHGLLAVLETSAKESRNIDEVFVLMAKELMARNRLQ 186
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDS VGKT VQ F + + +NT+GVDF+ + L G+ VK+Q+WD
Sbjct: 18 FKVILIGDSNVGKTCVVQHFRSGVYTETQQNTIGVDFTVRSLD---IDGKKVKMQVWD 72
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
D + + K+++IGDS VGKT VQ F + + +NT+GVDF+ + L
Sbjct: 13 DVDYLFKVILIGDSNVGKTCVVQHFRSGVYTETQQNTIGVDFTVRSL 59
>gi|289743679|gb|ADD20587.1| Rab protein 7 [Glossina morsitans morsitans]
Length = 208
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 107/195 (54%), Gaps = 5/195 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS+VGKTS + +V +F + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSSVGKTSIMNQYVSKRFSNQYKATIGADFCTKEVV---LDDRVVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T+ SF+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTSPNSFKNLDWWRDEFLIQASPRDPEHFPFVVLGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
D+ +RQV + C N + + E S+KE L +E + + + + E E
Sbjct: 128 DMDNRQVSTRRAQQWCQSKNDLPYFETSAKEGLNVELAFQTIAKNALAQEAEGELYNEFP 187
Query: 423 SSIRLSEETLRDDQP 437
IRL+ + R+++P
Sbjct: 188 DQIRLNGD--RNNRP 200
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS+VGKTS + +V +F + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSSVGKTSIMNQYVSKRFSNQYKATIGADFCTKEVV---LDDRVVTMQIWD 63
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S +++LK++++GDS+VGKTS + +V +F + YK T+G DF TK
Sbjct: 3 SRKKSLLKVIILGDSSVGKTSIMNQYVSKRFSNQYKATIGADFCTK 48
>gi|431922009|gb|ELK19182.1| cAMP-specific 3',5'-cyclic phosphodiesterase 4C [Pteropus alecto]
Length = 900
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 101/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 703 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 759
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 760 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 815
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E + + E S+K+++ ++ + LVD +IC K E
Sbjct: 816 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEKMSE 869
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 703 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 757
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 702 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 744
>gi|195398659|ref|XP_002057938.1| GJ15815 [Drosophila virilis]
gi|194150362|gb|EDW66046.1| GJ15815 [Drosophila virilis]
Length = 204
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 104/170 (61%), Gaps = 9/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELR---GKKIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSFE++V+W ++D D + ++L +
Sbjct: 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANED----VEKMILGN 122
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCD+ D++V E EA+ ++ + ++E S+K ++ IE + L + I+
Sbjct: 123 KCDMGDKRVVSKERGEAIAREHG-IRFMETSAKSNINIERAFCELAEAIL 171
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELR---GKKIKLQIWD 64
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS VGKT + F + F + +T+G+DF K
Sbjct: 9 LFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIK 49
>gi|417408694|gb|JAA50887.1| Putative rab subfamily protein of small gtpase, partial [Desmodus
rotundus]
Length = 212
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 108/192 (56%), Gaps = 18/192 (9%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGVFSERQSSTIGVDFTMKTLEIQ---GKRVKLQIWDTA 75
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D+T R SF SV W D+ G+ + LL+ +
Sbjct: 76 GQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA----GSSIVQLLIGN 131
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K DL R+V + E +++ Y+ + IE S+K+ +E++ R+ E V
Sbjct: 132 KSDLGALREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAF----------MRVATELV 181
Query: 420 ERKSSIRLSEET 431
R LSE++
Sbjct: 182 MRHGGPLLSEKS 193
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGVFSERQSSTIGVDFTMKTLEIQ---GKRVKLQIWD 73
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 100 PRPSDAET----VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P P D + + K++++GD++VGKT VQ F F + +T+GVDF+ K L
Sbjct: 6 PGPGDPDEHYDFLFKLVLVGDASVGKTCVVQRFKTGVFSERQSSTIGVDFTMKTL 60
>gi|17737369|ref|NP_523419.1| Rab10 [Drosophila melanogaster]
gi|194893373|ref|XP_001977864.1| GG19277 [Drosophila erecta]
gi|195345923|ref|XP_002039518.1| GM23016 [Drosophila sechellia]
gi|195482026|ref|XP_002101878.1| GE17866 [Drosophila yakuba]
gi|2317272|dbj|BAA21744.1| Rab10 [Drosophila melanogaster]
gi|7295615|gb|AAF50924.1| Rab10 [Drosophila melanogaster]
gi|16648398|gb|AAL25464.1| LD39986p [Drosophila melanogaster]
gi|190649513|gb|EDV46791.1| GG19277 [Drosophila erecta]
gi|194134744|gb|EDW56260.1| GM23016 [Drosophila sechellia]
gi|194189402|gb|EDX02986.1| GE17866 [Drosophila yakuba]
gi|220946172|gb|ACL85629.1| Rab10-PA [synthetic construct]
gi|220955946|gb|ACL90516.1| Rab10-PA [synthetic construct]
Length = 204
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 109/184 (59%), Gaps = 11/184 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELR---GKKIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSFE++V+W ++D D + ++L +
Sbjct: 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANED----VEKMILGN 122
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII--CSKRMEEE 417
KCD+ D++V E EA+ ++ + ++E S+K ++ IE + L + I+ S R E
Sbjct: 123 KCDMTDKRVVNKERGEAIAREHG-IRFMETSAKSNINIERAFCELAEAILDKTSGRESAE 181
Query: 418 AVER 421
ER
Sbjct: 182 NQER 185
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELR---GKKIKLQIWD 64
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS VGKT + F + F + +T+G+DF K
Sbjct: 9 LFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIK 49
>gi|71410421|ref|XP_807505.1| ras-related rab-4 [Trypanosoma cruzi strain CL Brener]
gi|70871523|gb|EAN85654.1| ras-related rab-4, putative [Trypanosoma cruzi]
Length = 201
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 85/133 (63%), Gaps = 8/133 (6%)
Query: 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
+++ GDS GK+S + FV++ F + T+GV+F +K++ + GR VKLQIWD AG
Sbjct: 10 KLILVGDSGTGKSSLLHRFVEDTFSEQQAQTIGVEFGSKIV---QLAGRKVKLQIWDTAG 66
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
Q+RY ++R YY+ + GC+I++D+T R ++ESV QW +D+ G + +L+ +K
Sbjct: 67 QERYKSVTRSYYRGAVGCLIVYDITQRSTYESVPQWLNDVRQLA----GKDVVVMLIGNK 122
Query: 362 CDLPD-RQVEINE 373
DL D R V+ NE
Sbjct: 123 SDLSDGRTVQHNE 135
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ GDS GK+S + FV++ F + T+GV+F +K++ + GR VKLQIWD
Sbjct: 11 LILVGDSGTGKSSLLHRFVEDTFSEQQAQTIGVEFGSKIV---QLAGRKVKLQIWD 63
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ ++K++++GDS GK+S + FV++ F + T+GV+F +K++
Sbjct: 6 QQLIKLILVGDSGTGKSSLLHRFVEDTFSEQQAQTIGVEFGSKIV 50
>gi|407850237|gb|EKG04694.1| hypothetical protein TCSYLVIO_004244 [Trypanosoma cruzi]
Length = 201
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 85/133 (63%), Gaps = 8/133 (6%)
Query: 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
+++ GDS GK+S + FV++ F + T+GV+F +K++ + GR VKLQIWD AG
Sbjct: 10 KLILVGDSGTGKSSLLHRFVEDTFSEQQAQTIGVEFGSKIV---QLAGRKVKLQIWDTAG 66
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
Q+RY ++R YY+ + GC+I++D+T R ++ESV QW +D+ G + +L+ +K
Sbjct: 67 QERYKSVTRSYYRGAVGCLIVYDITQRSTYESVPQWLNDVRQLA----GKDVVVMLIGNK 122
Query: 362 CDLPD-RQVEINE 373
DL D R V+ NE
Sbjct: 123 SDLSDGRTVQHNE 135
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ GDS GK+S + FV++ F + T+GV+F +K++ + GR VKLQIWD
Sbjct: 11 LILVGDSGTGKSSLLHRFVEDTFSEQQAQTIGVEFGSKIV---QLAGRKVKLQIWD 63
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ ++K++++GDS GK+S + FV++ F + T+GV+F +K++
Sbjct: 6 QQLIKLILVGDSGTGKSSLLHRFVEDTFSEQQAQTIGVEFGSKIV 50
>gi|145483363|ref|XP_001427704.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74834296|emb|CAI44508.1| rab_C23 [Paramecium tetraurelia]
gi|124394787|emb|CAK60306.1| unnamed protein product [Paramecium tetraurelia]
Length = 204
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 114/197 (57%), Gaps = 10/197 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+LI GDS VGKT + + +N F +N+ T+G+DF K + + GG+ VK+QIWD AGQ
Sbjct: 14 LLIIGDSGVGKTCLLMRYCENLFTNNHLTTIGIDFKLKTI---EVGGKKVKIQIWDTAGQ 70
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ +++ YY+ + G I+++ + +R SF+S+ W +++ + LL+A+K
Sbjct: 71 ERFRTITQTYYKGAQGIILVYGVDDRVSFQSIENWMKQINTHA----QEGVSKLLVANKS 126
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
D DR V+ E + + QY + + E S+K I + N + +I + ++ ++R
Sbjct: 127 DCADRVVQTQEGQRLADQYG-IPFFETSAKNGTNIYEIFNSIAKMVI--DKQNKDPLDRP 183
Query: 423 SSIRLSEETLRDDQPKK 439
S+++LS++ + Q K+
Sbjct: 184 SNVQLSQQPQSEVQKKQ 200
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+LI GDS VGKT + + +N F +N+ T+G+DF K + + GG+ VK+QIWD
Sbjct: 14 LLIIGDSGVGKTCLLMRYCENLFTNNHLTTIGIDFKLKTI---EVGGKKVKIQIWD 66
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 101 RPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ +D + ++K+L+IGDS VGKT + + +N F +N+ T+G+DF K +
Sbjct: 4 KKADFDFLVKLLIIGDSGVGKTCLLMRYCENLFTNNHLTTIGIDFKLKTI 53
>gi|341890273|gb|EGT46208.1| hypothetical protein CAEBREN_29374 [Caenorhabditis brenneri]
Length = 210
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 109/185 (58%), Gaps = 10/185 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD VGKT VQ F F+D T+GVDF+ K L+ G+ VKLQIWD
Sbjct: 11 FKIVLVGDMGVGKTCVVQRFRSGNFVDRQGTTIGVDFTMKTLNID---GKRVKLQIWDTG 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G ++ +D+T ++SF S+ +W D+ SK N + LL+ +
Sbjct: 68 GQERFRTITQSYYRSANGIVLCYDMTCKQSFGSLQRWIDDV-SKFAAPN---VVKLLIGT 123
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL D R VE +E E + + +E S+K + ++++ FL I ++ ++ V
Sbjct: 124 KCDLEDQRAVEADEAEMLQRANGMFTMLETSAKNDINVDNA--FLELATILKRQFDQGVV 181
Query: 420 ERKSS 424
E+ ++
Sbjct: 182 EQGAT 186
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD VGKT VQ F F+D T+GVDF+ K L+ G+ VKLQIWD
Sbjct: 11 FKIVLVGDMGVGKTCVVQRFRSGNFVDRQGTTIGVDFTMKTLNID---GKRVKLQIWD 65
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ KI+++GD VGKT VQ F F+D T+GVDF+ K L+
Sbjct: 10 LFKIVLVGDMGVGKTCVVQRFRSGNFVDRQGTTIGVDFTMKTLN 53
>gi|407044609|gb|EKE42710.1| Rab family GTPase [Entamoeba nuttalli P19]
Length = 206
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 102/180 (56%), Gaps = 8/180 (4%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
T+ ILI G+S VGKT+ ++ + +N+F D +T+GVDF +++++ Y G+ VKLQ+WD
Sbjct: 14 TFKILIIGESAVGKTAILERYCENEFHDELISTIGVDFKSRIIN---YQGKTVKLQLWDT 70
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ ++ YY+ + GC+I++D+T+ SFE + W ++L+ D L++
Sbjct: 71 AGQERFRNITSSYYRGTHGCLIVYDVTDITSFEKITYWINELN-----DCSIKPEILVVG 125
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
+K D D V E C + + S+K +E N LVD I +K + E V
Sbjct: 126 NKIDSEDAVVTSEIAEKFCRLSGGLRSMRCSAKTGENVESIFNVLVDSISKNKNIMERLV 185
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 43/59 (72%), Gaps = 3/59 (5%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++ ILI G+S VGKT+ ++ + +N+F D +T+GVDF +++++ Y G+ VKLQ+WD
Sbjct: 14 TFKILIIGESAVGKTAILERYCENEFHDELISTIGVDFKSRIIN---YQGKTVKLQLWD 69
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 96 IGFEPR-PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 153
+ EP + KIL+IG+S VGKT+ ++ + +N+F D +T+GVDF +++++++
Sbjct: 1 MNIEPHLQQQVDMTFKILIIGESAVGKTAILERYCENEFHDELISTIGVDFKSRIINYQ 59
>gi|269972612|emb|CBE66886.1| CG5915-PA [Drosophila ananassae]
Length = 207
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 98/176 (55%), Gaps = 8/176 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS+VGKTS + +V +F + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVV---VNDRVVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T SF+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTAPNSFKNLDSWRDEFLIQASPRDPEHFPFVVLGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
DL +RQV + C N + + E S+KE + +E L + I +E+EA
Sbjct: 128 DLDNRQVSTRRAQQWCQSKNDIPYYETSAKEGINVE-----LAFQTIAKNALEQEA 178
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS+VGKTS + +V +F + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVV---VNDRVVTMQIWD 63
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S +++LK++++GDS+VGKTS + +V +F + YK T+G DF TK
Sbjct: 3 SRKKSLLKVIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTK 48
>gi|145518399|ref|XP_001445075.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412512|emb|CAK77678.1| unnamed protein product [Paramecium tetraurelia]
Length = 211
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 108/185 (58%), Gaps = 9/185 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+S VGK+ + + +N+F +N+ NT+GVDF TK ++ G VKLQIWD A
Sbjct: 11 FKVLLIGNSGVGKSCMLMRYSENQFTNNFYNTIGVDFKTKTVA---IGEHNVKLQIWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQDR+ ++ YY+ + G II++D+T+R+SFE+V W ++D + +L+ +
Sbjct: 68 GQDRFRTITCSYYRGAQGIIIVYDITDRESFENVKTWIAEIDKYA----SESVNRMLVGN 123
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D+ + R+V E + Q+ + + E S+K + IE + + I+ + +AV
Sbjct: 124 KADITERREVSYEEGLELSRQFQ-IPFYETSAKSSINIEAAFTHITKNILNREIHNTKAV 182
Query: 420 ERKSS 424
RK+S
Sbjct: 183 VRKTS 187
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ G+S VGK+ + + +N+F +N+ NT+GVDF TK ++ G VKLQIWD
Sbjct: 11 FKVLLIGNSGVGKSCMLMRYSENQFTNNFYNTIGVDFKTKTVA---IGEHNVKLQIWD 65
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 35/49 (71%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
SD + K+L+IG+S VGK+ + + +N+F +N+ NT+GVDF TK ++
Sbjct: 5 SDYHFLFKVLLIGNSGVGKSCMLMRYSENQFTNNFYNTIGVDFKTKTVA 53
>gi|407410862|gb|EKF33148.1| hypothetical protein MOQ_002992 [Trypanosoma cruzi marinkellei]
Length = 201
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 85/133 (63%), Gaps = 8/133 (6%)
Query: 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
+++ GDS GK+S + FV++ F + T+GV+F +K++ + GR VKLQIWD AG
Sbjct: 10 KLILVGDSGTGKSSLLHRFVEDTFSEQQAQTIGVEFGSKIV---QLAGRKVKLQIWDTAG 66
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
Q+RY ++R YY+ + GC+I++D+T R ++ESV QW +D+ G + +L+ +K
Sbjct: 67 QERYKSVTRSYYRGAVGCLIVYDITQRSTYESVPQWLNDVRQLA----GKDVVVMLIGNK 122
Query: 362 CDLPD-RQVEINE 373
DL D R V+ NE
Sbjct: 123 SDLSDGRTVQHNE 135
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ GDS GK+S + FV++ F + T+GV+F +K++ + GR VKLQIWD
Sbjct: 11 LILVGDSGTGKSSLLHRFVEDTFSEQQAQTIGVEFGSKIV---QLAGRKVKLQIWD 63
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 31/43 (72%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
++K++++GDS GK+S + FV++ F + T+GV+F +K++
Sbjct: 8 LIKLILVGDSGTGKSSLLHRFVEDTFSEQQAQTIGVEFGSKIV 50
>gi|299471595|emb|CBN76817.1| Rab2B, RAB family GTPase [Ectocarpus siliculosus]
Length = 203
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 115/198 (58%), Gaps = 12/198 (6%)
Query: 238 IPT--YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQ 295
+PT + +I G++ VGK++ + F + +F D + T+GV+F K +S G VKL+
Sbjct: 1 MPTLLFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVS---IGDAQVKLE 57
Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
IWD AGQ+ ++ ++R YY+ +DGC+++FD+T+RKSFE++ +W LD + L
Sbjct: 58 IWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRW---LDEARMNSANPDLSV 114
Query: 356 LLLASKCDLPDRQ-VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
+L+A+K DL +++ V E +A ++ + ++E+S++ +E + +RI +
Sbjct: 115 MLIANKADLAEKRCVTTEEGQAFADKHGLL-FMEMSARNAAQVERAFIGTAERIFSD--L 171
Query: 415 EEEAVERKSSIRLSEETL 432
E + S I+L E +
Sbjct: 172 EAHPRNKPSGIQLKPEEM 189
>gi|148686490|gb|EDL18437.1| RAB3C, member RAS oncogene family, isoform CRA_c [Mus musculus]
Length = 225
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 112/194 (57%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 29 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 85
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L +
Sbjct: 86 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILAGN 141
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D R V + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 142 KCDMEDERVVSTERGQRLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 197
Query: 420 ERKSSIRLSEETLR 433
E +I ++++ R
Sbjct: 198 ETDPAITAAKQSTR 211
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 29 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 83
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 28 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 70
>gi|359322066|ref|XP_003639768.1| PREDICTED: ras-related protein Rab-43-like [Canis lupus familiaris]
Length = 212
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 98/162 (60%), Gaps = 8/162 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWDTA 75
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D+T R SF SV W D+ G+ + LL+ +
Sbjct: 76 GQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA----GSNIVQLLIGN 131
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL R+V + E +++ Y+ + IE S+K+ +E++
Sbjct: 132 KSDLGQLREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 173
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWD 73
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K++++GD++VGKT VQ F F + +T+GVDF+ K L
Sbjct: 18 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTL 60
>gi|403348115|gb|EJY73488.1| CRE-RAB-7 protein [Oxytricha trifallax]
Length = 219
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 103/184 (55%), Gaps = 6/184 (3%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I+I GDS VGKT+ +Q +V K + K T+G DFS K ++ + V LQIWD AGQ
Sbjct: 12 IVILGDSGVGKTTLLQQYVNKKVNAHSKPTIGADFSKKEIT---IDNQIVTLQIWDTAGQ 68
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+++ + +Y+ +D C +++D+TN+KSFE + +W+ + P +L+ +K
Sbjct: 69 EKFQSLGYAFYRGADCCALVYDITNQKSFEDLTRWRDGFIEHAAPTDPNKFPFVLIGNKV 128
Query: 363 DL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
D P+R+V+ + +A C + M + E S+KE++ +ED+ + I KR E +
Sbjct: 129 DKEPERKVKSTDAQAWCKENGNMPYYETSAKENVSVEDAFVEMAKMAI--KRESENVFQL 186
Query: 422 KSSI 425
SI
Sbjct: 187 PDSI 190
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 101 RPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ S + LKI+++GDS VGKT+ +Q +V K + K T+G DFS K ++
Sbjct: 2 QSSKKKNFLKIVILGDSGVGKTTLLQQYVNKKVNAHSKPTIGADFSKKEIT 52
>gi|148704501|gb|EDL36448.1| RAB15, member RAS oncogene family, isoform CRA_b [Mus musculus]
Length = 215
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 120/213 (56%), Gaps = 10/213 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + + G V++QIWD A
Sbjct: 12 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI---EVDGIKVRIQIWDTA 68
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY +++ YY+ + G +++D+++ +S++ +++W D+D + +L+ +
Sbjct: 69 GQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA----PEGVQKILIGN 124
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D RQV + + + +Y M + E S+ +L I++S L + ++ + R E + +
Sbjct: 125 KADEEQKRQVGREQGQQLAKEYG-MDFYETSACTNLNIKESFTRLTELVLQAHRKELDGL 183
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
++S L+ L +D+ K PA+ T CWC
Sbjct: 184 RTRASNELALAELEEDEGKPEGPANSSKT-CWC 215
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + + G V++QIWD
Sbjct: 12 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI---EVDGIKVRIQIWD 66
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ + ++L+IGDS VGKT + F N+F ++ +T+GVDF K +
Sbjct: 9 DVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI 53
>gi|145493011|ref|XP_001432502.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74831508|emb|CAI39319.1| rab_A65 [Paramecium tetraurelia]
gi|124399614|emb|CAK65105.1| unnamed protein product [Paramecium tetraurelia]
Length = 219
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 106/185 (57%), Gaps = 9/185 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+S VGK+ + + +N+F +N+ NT+GVDF TK ++ G VKLQIWD A
Sbjct: 20 FKVLLIGNSGVGKSCMLMRYSENQFTNNFYNTIGVDFKTKTIA---LGEHNVKLQIWDTA 76
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQDR+ ++ YY+ + G II++D+T+R+SFE+V W ++D + LL+ +
Sbjct: 77 GQDRFRTITCSYYRGAQGIIIVYDITDRESFENVKTWMAEIDKYA----SESVNRLLVGN 132
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D+ + R+V E + Y + + E S+K + IE + + I+ + AV
Sbjct: 133 KADITERREVSYEEGLELSRLYQ-IPFYETSAKSSINIEAAFTHITKNILNRELHNTRAV 191
Query: 420 ERKSS 424
RK+S
Sbjct: 192 VRKTS 196
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ G+S VGK+ + + +N+F +N+ NT+GVDF TK ++ G VKLQIWD
Sbjct: 20 FKVLLIGNSGVGKSCMLMRYSENQFTNNFYNTIGVDFKTKTIA---LGEHNVKLQIWD 74
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 33/44 (75%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ K+L+IG+S VGK+ + + +N+F +N+ NT+GVDF TK ++
Sbjct: 19 LFKVLLIGNSGVGKSCMLMRYSENQFTNNFYNTIGVDFKTKTIA 62
>gi|195469749|ref|XP_002099799.1| GE16524 [Drosophila yakuba]
gi|194187323|gb|EDX00907.1| GE16524 [Drosophila yakuba]
Length = 234
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 119/215 (55%), Gaps = 14/215 (6%)
Query: 235 PIQIPTY--PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP- 291
P+Q+ + L+ GDS VGKT + + +F + +TVG+DF K L + G R
Sbjct: 8 PLQLAGFGEQFLVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFREKRLLYNSRGRRHR 67
Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA 351
+ LQIWD AGQ+R+ ++ +Y+++ G +++FDLT+ KSF W L + ++
Sbjct: 68 IHLQIWDTAGQERFRSLTTAFYRDAMGFLLIFDLTSEKSFLETANWLSQLRTHAYSEDPD 127
Query: 352 MLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
++ C +KCDL R V +++ A+C +Y + +IE S+ +++++ LV R++
Sbjct: 128 VVLC---GNKCDLLQLRVVSRDQVAALCRRYR-LPYIETSACTGANVKEAVELLVGRVM- 182
Query: 411 SKRMEEEAVERKSSIRLSEE----TLRDDQPKKLV 441
+R+E A R+ S+ L++ + QP+ LV
Sbjct: 183 -ERIENAACNREFSLLLTQSRCLPNIAYGQPEDLV 216
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 165 PIQTPSY--LILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP- 221
P+Q + L+ GDS VGKT + + +F + +TVG+DF K L + G R
Sbjct: 8 PLQLAGFGEQFLVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFREKRLLYNSRGRRHR 67
Query: 222 VKLQIWD 228
+ LQIWD
Sbjct: 68 IHLQIWD 74
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR 158
+ LV+GDS VGKT + + +F + +TVG+DF K L + G R
Sbjct: 17 QFLVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFREKRLLYNSRGRR 65
>gi|403373426|gb|EJY86632.1| Rab GTPase 7 [Oxytricha trifallax]
Length = 234
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 104/179 (58%), Gaps = 14/179 (7%)
Query: 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
IL+ G+S GKTS V FVQNKF NYK TV DF+ K+L K ++LQ+WD+ G
Sbjct: 3 KILVIGNSYSGKTSIVNRFVQNKFDTNYKATVACDFAMKIL---KIEDTEIRLQLWDLVG 59
Query: 302 QDRYIC-MSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
QD I +++++ + + G +++ D+T+R+S ES + WK +D+ L NG +P +L+ +
Sbjct: 60 QDSRIGGINKLFCRGASGALVVADITSRESLESTISWKEQVDTHAALKNGQPIPMILVVN 119
Query: 361 KCDLPD----RQVEINE------IEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
K D+ + R E+ E ++ +++F+ + S+K L I ++ + LV +I
Sbjct: 120 KYDMIEDIEQRGQELEEHMTEEFLQEFAQEHDFIGVLRTSAKTGLNINNAFSQLVRQIF 178
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCT 232
IL+ G+S GKTS V FVQNKF NYK TV DF+ K+L K ++LQ+WD+
Sbjct: 4 ILVIGNSYSGKTSIVNRFVQNKFDTNYKATVACDFAMKIL---KIEDTEIRLQLWDLVGQ 60
Query: 233 LSPI 236
S I
Sbjct: 61 DSRI 64
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 32/43 (74%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
++KILVIG+S GKTS V FVQNKF NYK TV DF+ K+L
Sbjct: 1 MIKILVIGNSYSGKTSIVNRFVQNKFDTNYKATVACDFAMKIL 43
>gi|81251485|gb|ABB70064.1| WSSV receptor Rab7 [Penaeus monodon]
gi|254212147|gb|ACT65737.1| Rab7 [Litopenaeus vannamei]
gi|305693531|gb|ADM66002.1| Rab7 [Penaeus monodon]
Length = 205
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 90/156 (57%), Gaps = 3/156 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + FV KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEV---MVDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T+ +F+S+ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTSPNTFKSLDSWRDEFLIQASPRDPDHFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398
DL +R V + CH N + + E S+KE + +E
Sbjct: 128 DLENRAVSTKRAQQWCHSKNEVPYFETSAKEAINVE 163
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + FV KF + YK T+G DF TK
Sbjct: 3 SRKKILLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTK 48
>gi|312376692|gb|EFR23707.1| hypothetical protein AND_12415 [Anopheles darlingi]
Length = 219
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 99/171 (57%), Gaps = 10/171 (5%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
TY +L+ GDS VGKT V + ++ D Y +T+G+DF KL++ G P+KLQIWD
Sbjct: 8 TYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKLIN---LDGVPIKLQIWDT 64
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ ++ YY+ + G ++M+D+T+ +SF ++ W ++ D + +L
Sbjct: 65 AGQERFRTLTTAYYRGAMGILLMYDVTSLESFNNLSYWLRNIQENAAPD----VVKVLAG 120
Query: 360 SKCDL--PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+KC+ P R V+ E + ++ M + EVS K+++ IED+ L +I
Sbjct: 121 NKCECNPPQRAVDKERGEKIAENFD-MPFFEVSCKQNINIEDAFLTLARKI 170
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 168 TPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 227
+Y +L+ GDS VGKT V + ++ D Y +T+G+DF KL++ G P+KLQIW
Sbjct: 6 AATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKLIN---LDGVPIKLQIW 62
Query: 228 D 228
D
Sbjct: 63 D 63
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
D K+LV+GDS VGKT V + ++ D Y +T+G+DF KL++
Sbjct: 4 DFAATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKLIN 51
>gi|378756664|gb|EHY66688.1| rab-protein 10 [Nematocida sp. 1 ERTm2]
Length = 208
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 82/137 (59%), Gaps = 8/137 (5%)
Query: 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
+LI G+S VGKTS +Q F+ NKF + T+G+DF +K + K G+ ++LQIWD AG
Sbjct: 9 KLLIIGESNVGKTSILQRFIDNKFEKTFSTTIGIDFRSKAI---KVDGKEIELQIWDTAG 65
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
Q+R+ ++R YY+ SDG + FDLT+ SF S+ +W ++ K +P LL +K
Sbjct: 66 QERFFSITRSYYRGSDGIFLTFDLTSESSFASLTKWIGEIKEKV----DEKVPVFLLGNK 121
Query: 362 CD-LPDRQVEINEIEAV 377
D L + EIN + V
Sbjct: 122 KDLLKGSESEINLLATV 138
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+LI G+S VGKTS +Q F+ NKF + T+G+DF +K + K G+ ++LQIWD
Sbjct: 10 LLIIGESNVGKTSILQRFIDNKFEKTFSTTIGIDFRSKAI---KVDGKEIELQIWD 62
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
LK+L+IG+S VGKTS +Q F+ NKF + T+G+DF +K +
Sbjct: 8 LKLLIIGESNVGKTSILQRFIDNKFEKTFSTTIGIDFRSKAI 49
>gi|194742714|ref|XP_001953846.1| GF17031 [Drosophila ananassae]
gi|190626883|gb|EDV42407.1| GF17031 [Drosophila ananassae]
gi|269972614|emb|CBE66887.1| CG5915-PA [Drosophila ananassae]
gi|269972616|emb|CBE66888.1| CG5915-PA [Drosophila ananassae]
gi|269972618|emb|CBE66889.1| CG5915-PA [Drosophila ananassae]
gi|269972620|emb|CBE66890.1| CG5915-PA [Drosophila ananassae]
gi|269972622|emb|CBE66891.1| CG5915-PA [Drosophila ananassae]
gi|269972624|emb|CBE66892.1| CG5915-PA [Drosophila ananassae]
gi|269972628|emb|CBE66894.1| CG5915-PA [Drosophila ananassae]
gi|269972630|emb|CBE66895.1| CG5915-PA [Drosophila ananassae]
gi|269972632|emb|CBE66896.1| CG5915-PA [Drosophila ananassae]
gi|269972634|emb|CBE66897.1| CG5915-PA [Drosophila ananassae]
gi|269973057|emb|CBE67073.1| CG5915-PA [Drosophila phaeopleura]
Length = 207
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 98/176 (55%), Gaps = 8/176 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS+VGKTS + +V +F + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVV---VNDRVVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T SF+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTAPNSFKNLDSWRDEFLIQASPRDPEHFPFVVLGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
DL +RQV + C N + + E S+KE + +E L + I +E+EA
Sbjct: 128 DLDNRQVSTRRAQQWCQSKNDIPYYETSAKEGINVE-----LAFQTIAKNALEQEA 178
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS+VGKTS + +V +F + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVV---VNDRVVTMQIWD 63
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S +++LK++++GDS+VGKTS + +V +F + YK T+G DF TK
Sbjct: 3 SRKKSLLKVIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTK 48
>gi|401405220|ref|XP_003882060.1| putative Ras family domain-containing protein [Neospora caninum
Liverpool]
gi|325116474|emb|CBZ52028.1| putative Ras family domain-containing protein [Neospora caninum
Liverpool]
Length = 491
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 121/226 (53%), Gaps = 26/226 (11%)
Query: 196 LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCTLSPIQIPTYPILITGDSTVGKTS 255
++ K ++G D+ KLL GR +L P + GD++VGK+
Sbjct: 203 IEERKTSLGYDYLVKLLIIDALLGR----------SSLLPFS------FVAGDTSVGKSC 246
Query: 256 YVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQN 315
+ F Q +F+D ++ T+GVDF T+ L G+ VK+Q+WD AG +R+ ++ YY++
Sbjct: 247 LLSRFAQGRFVD-HRTTLGVDFETRTLD---IDGKRVKIQLWDTAGHERFRSVALSYYRS 302
Query: 316 SDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIE 375
+ G +++FDLT R+SFESV W +L+ + + + +L+ +K DL +R V E
Sbjct: 303 AMGALVVFDLTKRESFESVRSWLRELEDRAPQN----VQKILVGNKADLANRVVSGEEAR 358
Query: 376 AVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII-CSKRMEEEAVE 420
+ +YN + +IE S+K + + L +++ C +++E + E
Sbjct: 359 RLATEYN-LRYIETSAKTGQHVRAAFVELTLQVLRCLQKLELQVTE 403
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 12/95 (12%)
Query: 134 LDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQN 193
++ K ++G D+ KLL GR + P + GD++VGK+ + F Q
Sbjct: 203 IEERKTSLGYDYLVKLLIIDALLGR--SSLLPFS------FVAGDTSVGKSCLLSRFAQG 254
Query: 194 KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+F+D ++ T+GVDF T+ L G+ VK+Q+WD
Sbjct: 255 RFVD-HRTTLGVDFETRTLD---IDGKRVKIQLWD 285
>gi|327278641|ref|XP_003224069.1| PREDICTED: ras-related protein Rab-7b-like [Anolis carolinensis]
Length = 200
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 95/163 (58%), Gaps = 7/163 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I+I G VGKTS + +V KF ++Y+ T+G TK+++ + P+KLQIWD GQ
Sbjct: 11 IIIIGALGVGKTSLLHQYVHKKFYEDYRTTLGASILTKMVAVDR---TPLKLQIWDTGGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCI-LDNGAMLPCLLLASK 361
+R+ M +Y+ SDGC++ FD+T+ SFE + W+ D K I + G P ++L +K
Sbjct: 68 ERFRSMVSTFYKGSDGCMLAFDVTDMDSFECLEDWREDFLQKVIPTEQG--FPMVVLGNK 125
Query: 362 CDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFL 404
DL DRQV C + + +++ EVS+K + + ++ + L
Sbjct: 126 IDLNDRQVSKETASLWCKEKD-IAYFEVSAKNDINVVNAFDTL 167
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
I+I G VGKTS + +V KF ++Y+ T+G TK+++ + P+KLQIWD
Sbjct: 11 IIIIGALGVGKTSLLHQYVHKKFYEDYRTTLGASILTKMVAVDR---TPLKLQIWD 63
Score = 41.6 bits (96), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
LKI++IG VGKTS + +V KF ++Y+ T+G TK+++
Sbjct: 9 LKIIIIGALGVGKTSLLHQYVHKKFYEDYRTTLGASILTKMVA 51
>gi|50754287|ref|XP_414313.1| PREDICTED: ras-related protein Rab-43 [Gallus gallus]
Length = 215
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 102/163 (62%), Gaps = 9/163 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 21 FKLVLIGDASVGKTCLVQRFKTGAFAERQGSTIGVDFTMKSLEIQ---GKRVKLQIWDTA 77
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D++ R SF S+ +W D+ G+ + LL+ +
Sbjct: 78 GQERFRTITQSYYRSANGAILAYDISKRGSFLSIPRWIEDVRKYA----GSNIVQLLIGN 133
Query: 361 KCDLPD-RQVEINEIEAVCHQY-NFMSWIEVSSKEHLMIEDSM 401
K DL D R+V++ E +++ +Y N + IE S+K+ +E++
Sbjct: 134 KSDLSDLREVQLEEAQSLAERYDNIICAIETSAKDSSNVEEAF 176
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 21 FKLVLIGDASVGKTCLVQRFKTGAFAERQGSTIGVDFTMKSLEIQ---GKRVKLQIWD 75
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+++IGD++VGKT VQ F F + +T+GVDF+ K L
Sbjct: 20 LFKLVLIGDASVGKTCLVQRFKTGAFAERQGSTIGVDFTMKSL 62
>gi|58378592|ref|XP_308884.2| AGAP006873-PA [Anopheles gambiae str. PEST]
gi|55245962|gb|EAA04246.2| AGAP006873-PA [Anopheles gambiae str. PEST]
Length = 219
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 99/171 (57%), Gaps = 10/171 (5%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
TY +L+ GDS VGKT V + ++ D Y +T+G+DF KL++ G P+KLQIWD
Sbjct: 8 TYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKLIN---LDGVPIKLQIWDT 64
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ ++ YY+ + G ++M+D+T+ +SF ++ W ++ D + +L
Sbjct: 65 AGQERFRTLTTAYYRGAMGILLMYDVTSLESFNNLSYWLRNIQENAAPD----VVKVLAG 120
Query: 360 SKCDL--PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+KC+ P R V+ E + ++ M + EVS K+++ IED+ L +I
Sbjct: 121 NKCECNPPQRAVDKERGEKIAENFD-MPFFEVSCKQNINIEDAFLTLARKI 170
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 168 TPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 227
+Y +L+ GDS VGKT V + ++ D Y +T+G+DF KL++ G P+KLQIW
Sbjct: 6 AATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKLIN---LDGVPIKLQIW 62
Query: 228 D 228
D
Sbjct: 63 D 63
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
D K+LV+GDS VGKT V + ++ D Y +T+G+DF KL++
Sbjct: 4 DFAATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKLIN 51
>gi|165377074|ref|NP_598811.3| ras-related protein Rab-15 [Mus musculus]
gi|338719887|ref|XP_003364076.1| PREDICTED: ras-related protein Rab-15-like [Equus caballus]
gi|74177394|dbj|BAE34591.1| unnamed protein product [Mus musculus]
Length = 212
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 120/213 (56%), Gaps = 10/213 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + + G V++QIWD A
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI---EVDGIKVRIQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY +++ YY+ + G +++D+++ +S++ +++W D+D + +L+ +
Sbjct: 66 GQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA----PEGVQKILIGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D RQV + + + +Y M + E S+ +L I++S L + ++ + R E + +
Sbjct: 122 KADEEQKRQVGREQGQQLAKEYG-MDFYETSACTNLNIKESFTRLTELVLQAHRKELDGL 180
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
++S L+ L +D+ K PA+ T CWC
Sbjct: 181 RTRASNELALAELEEDEGKPEGPANSSKT-CWC 212
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + + G V++QIWD
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI---EVDGIKVRIQIWD 63
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ + ++L+IGDS VGKT + F N+F ++ +T+GVDF K +
Sbjct: 6 DVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI 50
>gi|348568990|ref|XP_003470281.1| PREDICTED: ras-related protein Rab-3C-like [Cavia porcellus]
Length = 219
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 114/194 (58%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 135
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D +V E + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 136 KCDMEDERVISTERGQRLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 191
Query: 420 ERKSSIRLSEETLR 433
E +I ++++ R
Sbjct: 192 ETDPAIAAAKQSTR 205
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 77
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 64
>gi|348558673|ref|XP_003465141.1| PREDICTED: ras-related protein Rab-3A [Cavia porcellus]
Length = 220
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 101/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E + + E S+K+++ ++ + LVD +IC K E
Sbjct: 136 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEKMSE 189
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 77
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 13 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 64
>gi|444726632|gb|ELW67156.1| Ras-related protein Rab-3A [Tupaia chinensis]
Length = 208
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNA---QVLLVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E + + E S+K+++ ++ + LVD +IC K E
Sbjct: 136 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEKMSE 189
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 77
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 13 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 64
>gi|350411512|ref|XP_003489373.1| PREDICTED: ras-related protein Rab-3-like [Bombus impatiens]
Length = 270
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 101/177 (57%), Gaps = 12/177 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 69 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKR----VKLQIWDT 124
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDS-KCILDNGAMLPCLLL 358
AGQ+RY ++ YY+ + G I+M+D+TN +SF SV W + + C DN + +L+
Sbjct: 125 AGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWVTQIKTYSC--DNAQV---ILV 179
Query: 359 ASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
+KCD+ D +V E + + E S+KE++ I+ LVD IIC K E
Sbjct: 180 GNKCDMEDERVITTERGKQLADQLGVQFFETSAKENINIKTVFEQLVD-IICDKMSE 235
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 69 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKR----VKLQIWD 123
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKK 154
E + + + K+L+IG+S+VGKTS++ + + F + +TVG+DF K + H K
Sbjct: 59 EAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK 115
>gi|321465562|gb|EFX76562.1| hypothetical protein DAPPUDRAFT_231190 [Daphnia pulex]
Length = 208
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 90/159 (56%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEV---MVDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T+ SF+ + W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTSPTSFKDLDSWRDEFLIQASPRDPENFPFVVLGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +R V + CH N + + E S+KE + +E +
Sbjct: 128 DLENRAVSTKRAQQWCHAKNDIPYFETSAKEGINVEQAF 166
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEV---MVDDRLVTMQIWD 63
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTK 48
>gi|28875789|ref|NP_789862.1| ras-related protein Rab-3C [Bos taurus]
gi|162764|gb|AAA30418.1| GTP-binding protein [Bos taurus]
Length = 218
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 103/175 (58%), Gaps = 9/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W L+ DN + +L+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWS--LNQTYSWDNAQV---ILVGN 134
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E ++ + E S+K+++ ++ + LVD IIC K E
Sbjct: 135 KCDMEDERVISSEEGQHLGEHLGFEFFETSAKDNINVKQTFERLVD-IICDKMSE 188
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 77
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 64
>gi|33859608|ref|NP_035356.1| ras-related protein Rab-19 [Mus musculus]
gi|158518382|sp|P35294.3|RAB19_MOUSE RecName: Full=Ras-related protein Rab-19
gi|21411203|gb|AAH32936.1| RAB19, member RAS oncogene family [Mus musculus]
gi|112292995|dbj|BAF02875.1| Rab19 [Mus musculus]
gi|148681662|gb|EDL13609.1| RAB19, member RAS oncogene family [Mus musculus]
Length = 217
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 114/218 (52%), Gaps = 24/218 (11%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GDS VGKT VQ F + ++ +NT+GVDF+ + L + G+ VK+Q+WD A
Sbjct: 18 FKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSL---EIDGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT R +FESV W H+++ A L +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKY----GAANLVIMLIGN 130
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K DL + R V + + ++ ++ +E S+KE I++ + +I
Sbjct: 131 KSDLWEKRHVLFEDACTLAEKHGLLAVLETSAKESRNIDEVFVLMAKELIA--------- 181
Query: 420 ERKSSIRLSEETL-----RDDQPKKLVPADKVSTYCWC 452
++S+ L E+ +D P + ST C C
Sbjct: 182 --RNSLHLYGESAQQGLSQDSSPVLVAQVPNESTRCTC 217
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDS VGKT VQ F + ++ +NT+GVDF+ + L + G+ VK+Q+WD
Sbjct: 18 FKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSL---EIDGKKVKMQVWD 72
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 100 PRPSD--AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
R SD + + K+++IGDS VGKT VQ F + ++ +NT+GVDF+ + L
Sbjct: 7 SRTSDENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSL 59
>gi|13470090|ref|NP_076341.1| ras-related protein Rab-3C [Mus musculus]
gi|51338595|sp|P62824.1|RAB3C_RAT RecName: Full=Ras-related protein Rab-3C
gi|51338605|sp|P62823.1|RAB3C_MOUSE RecName: Full=Ras-related protein Rab-3C
gi|12597437|gb|AAG60047.1|AF312037_1 small GTP binding protein Rab3C [Mus musculus]
gi|1304207|dbj|BAA11302.1| rab3C [Rattus norvegicus]
gi|12851806|dbj|BAB29172.1| unnamed protein product [Mus musculus]
gi|13027787|gb|AAK08980.1| small GTP-binding protein Rab3C [Mus musculus]
gi|13094065|emb|CAC32042.1| Rab3C [Mus musculus]
gi|26348082|dbj|BAC37689.1| unnamed protein product [Mus musculus]
gi|74216593|dbj|BAE37733.1| unnamed protein product [Mus musculus]
gi|74223648|dbj|BAE28694.1| unnamed protein product [Mus musculus]
gi|89130661|gb|AAI14336.1| RAB3C, member RAS oncogene family [Mus musculus]
gi|112292947|dbj|BAF02851.1| Rab3C [Mus musculus]
gi|148686488|gb|EDL18435.1| RAB3C, member RAS oncogene family, isoform CRA_a [Mus musculus]
gi|149059322|gb|EDM10329.1| RAB3C, member RAS oncogene family, isoform CRA_a [Rattus
norvegicus]
Length = 227
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 112/194 (57%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 87
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L +
Sbjct: 88 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILAGN 143
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D R V + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 144 KCDMEDERVVSTERGQRLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 199
Query: 420 ERKSSIRLSEETLR 433
E +I ++++ R
Sbjct: 200 ETDPAITAAKQSTR 213
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 85
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 72
>gi|333466057|gb|AEF33797.1| Rab7 [Fenneropenaeus chinensis]
Length = 237
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 89/156 (57%), Gaps = 3/156 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + FV KF + YK T+G DF TK R V +QIWD AGQ
Sbjct: 43 VIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTK---EVMVDDRLVTMQIWDTAGQ 99
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T+ +F+S+ W+ + + + P ++L +K
Sbjct: 100 ERFQSLGVAFYRGADCCVLVYDVTSPNTFKSLDSWRDEFLIQASPRDPDHFPFVVLGNKI 159
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398
DL +R V + CH N + + E S+KE + +E
Sbjct: 160 DLENRAVSTKRAQQWCHSKNEVPYFETSAKEAINVE 195
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + FV KF + YK T+G DF TK R V +QIWD
Sbjct: 43 VIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTK---EVMVDDRLVTMQIWD 95
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + FV KF + YK T+G DF TK
Sbjct: 35 SRKKILLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTK 80
>gi|340729787|ref|XP_003403177.1| PREDICTED: ras-related protein Rab-3-like [Bombus terrestris]
Length = 270
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 101/177 (57%), Gaps = 12/177 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 69 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKR----VKLQIWDT 124
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDS-KCILDNGAMLPCLLL 358
AGQ+RY ++ YY+ + G I+M+D+TN +SF SV W + + C DN + +L+
Sbjct: 125 AGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWVTQIKTYSC--DNAQV---ILV 179
Query: 359 ASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
+KCD+ D +V E + + E S+KE++ I+ LVD IIC K E
Sbjct: 180 GNKCDMEDERVITTERGKQLADQLGVQFFETSAKENINIKTVFEQLVD-IICDKMSE 235
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 69 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKR----VKLQIWD 123
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKK 154
E + + + K+L+IG+S+VGKTS++ + + F + +TVG+DF K + H K
Sbjct: 59 EAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK 115
>gi|344235947|gb|EGV92050.1| Ras-related protein Rab-3C [Cricetulus griseus]
Length = 220
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 113/194 (58%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 80
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 81 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 136
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D R + + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 137 KCDMEDERIISTERGQHLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 192
Query: 420 ERKSSIRLSEETLR 433
E +I ++++ R
Sbjct: 193 ETDPAITAAKQSTR 206
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 78
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 23 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 65
>gi|229367508|gb|ACQ58734.1| Ras-related protein Rab-7a [Anoplopoma fimbria]
Length = 207
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +++ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFHRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C N + + E S+KE + +E +
Sbjct: 128 DLENRQVTTKRAQAWCQSKNNIPYFETSAKEAINVEQAF 166
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|209150114|gb|ACI33008.1| Ras-related protein Rab-7a [Salmo salar]
Length = 205
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 108/195 (55%), Gaps = 9/195 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV---MVDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL +RQV +A C + + E S+KE + ++ + + IC +++E+ E +
Sbjct: 128 DLENRQVTTKRAQAWCTSKGSIPYFETSAKEAINVDQAF-----QTICRNALKQES-EVE 181
Query: 423 SSIRLSEETLRDDQP 437
+ + LRDD+P
Sbjct: 182 TYDFPDQIKLRDDRP 196
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV---MVDDRLVTMQIWD 63
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKILLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|149059323|gb|EDM10330.1| RAB3C, member RAS oncogene family, isoform CRA_b [Rattus
norvegicus]
Length = 225
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 112/194 (57%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 29 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 85
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L +
Sbjct: 86 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILAGN 141
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D R V + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 142 KCDMEDERVVSTERGQRLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 197
Query: 420 ERKSSIRLSEETLR 433
E +I ++++ R
Sbjct: 198 ETDPAITAAKQSTR 211
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 29 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 83
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 28 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 70
>gi|91079074|ref|XP_975225.1| PREDICTED: similar to Rab-protein 10 CG17060-PA [Tribolium
castaneum]
gi|270003655|gb|EFA00103.1| hypothetical protein TcasGA2_TC002919 [Tribolium castaneum]
Length = 203
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 101/172 (58%), Gaps = 13/172 (7%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTTTFISTIGIDFKIKTVELR---GKKIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSFE++V+W ++D D + ++L +
Sbjct: 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANED----VEKMILGN 122
Query: 361 KCDLPDRQV---EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCD+ D++ E E A H FM E S+K ++ I+ + N L + I+
Sbjct: 123 KCDMSDKRTVSKERGETIAREHGIRFM---ETSAKANINIDKAFNDLAEAIL 171
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTTTFISTIGIDFKIKTVELR---GKKIKLQIWD 64
>gi|67475925|ref|XP_653593.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|50978620|dbj|BAD34977.1| EhRabC2 protein [Entamoeba histolytica]
gi|56470561|gb|EAL48205.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|449705539|gb|EMD45563.1| Rab family gtpase [Entamoeba histolytica KU27]
Length = 206
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 102/180 (56%), Gaps = 8/180 (4%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
T+ ILI G+S VGKT+ ++ + +N+F D +T+GVDF +++++ Y G+ VKLQ+WD
Sbjct: 14 TFKILIIGESAVGKTAILERYCENEFHDELISTIGVDFKSRIIN---YQGKTVKLQLWDT 70
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ ++ YY+ + GC+I++D+T+ SFE + W ++L+ D L++
Sbjct: 71 AGQERFRNITSSYYRGTHGCLIVYDVTDITSFEKITYWINELN-----DCSIKPEILVVG 125
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
+K D D V E C + + S+K +E N LVD I +K + E +
Sbjct: 126 NKIDSEDAVVTSEIAEKFCRLSGGLRSMRCSAKTGENVESIFNVLVDSISKNKNIMERLI 185
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 43/59 (72%), Gaps = 3/59 (5%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++ ILI G+S VGKT+ ++ + +N+F D +T+GVDF +++++ Y G+ VKLQ+WD
Sbjct: 14 TFKILIIGESAVGKTAILERYCENEFHDELISTIGVDFKSRIIN---YQGKTVKLQLWD 69
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 96 IGFEPR-PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 153
+ EP + KIL+IG+S VGKT+ ++ + +N+F D +T+GVDF +++++++
Sbjct: 1 MNIEPHLQQQVDMTFKILIIGESAVGKTAILERYCENEFHDELISTIGVDFKSRIINYQ 59
>gi|440896449|gb|ELR48367.1| Ras-related protein Rab-3A, partial [Bos grunniens mutus]
Length = 221
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 101/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 24 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 80
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 81 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 136
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E + + E S+K+++ ++ + LVD +IC K E
Sbjct: 137 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEKMSE 190
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 24 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 78
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 14 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 65
>gi|110350677|ref|NP_776871.2| ras-related protein Rab-3A [Bos taurus]
gi|116242742|sp|P11023.3|RAB3A_BOVIN RecName: Full=Ras-related protein Rab-3A; AltName: Full=SMG P25A
gi|109658293|gb|AAI18279.1| RAB3A, member RAS oncogene family [Bos taurus]
gi|296486045|tpg|DAA28158.1| TPA: ras-related protein Rab-3A [Bos taurus]
Length = 220
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 101/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E + + E S+K+++ ++ + LVD +IC K E
Sbjct: 136 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEKMSE 189
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 77
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 13 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 64
>gi|70888341|gb|AAZ13769.1| Rab protein [Euplotes octocarinatus]
Length = 220
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 109/185 (58%), Gaps = 9/185 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GDS+VGK+ + F + F DNY T+GVDF + L + G VKLQIWD A
Sbjct: 12 FKMVLIGDSSVGKSCLLIRFSDDDFNDNYVTTIGVDFRFRTL---RIGEYSVKLQIWDTA 68
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ +DG I++FDL+N+++F +V W ++ KC ++ + ++ A+
Sbjct: 69 GQERYRTITNAYYRGADGIIVVFDLSNKETFLTVSDWLEEV-KKCAPEDTLI---IVFAN 124
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL D RQV +I++ + + IE S+K ++ FL ++I ++ + ++
Sbjct: 125 KCDLYDERQVSEEDIKSF-EEKTGIQVIETSAKSAENVDKGFLFLTTKLIEKRQKDGDSF 183
Query: 420 ERKSS 424
E S
Sbjct: 184 ENDGS 188
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 167 QTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
Q YL +++ GDS+VGK+ + F + F DNY T+GVDF + L + G VKL
Sbjct: 6 QNYHYLFKMVLIGDSSVGKSCLLIRFSDDDFNDNYVTTIGVDFRFRTL---RIGEYSVKL 62
Query: 225 QIWD 228
QIWD
Sbjct: 63 QIWD 66
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
+ K+++IGDS+VGK+ + F + F DNY T+GVDF + L +Y
Sbjct: 11 LFKMVLIGDSSVGKSCLLIRFSDDDFNDNYVTTIGVDFRFRTLRIGEY 58
>gi|2598565|emb|CAA56644.1| rab19 [Mus musculus]
Length = 217
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 114/218 (52%), Gaps = 24/218 (11%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GDS VGKT VQ F + ++ +NT+GVDF+ + L + G+ VK+Q+WD A
Sbjct: 18 FKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSL---EIDGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT R +FESV W H+++ A L +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKY----GAANLVIMLIGN 130
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K DL + R V + + ++ ++ +E S+KE I++ + +I
Sbjct: 131 KSDLWEKRHVLFEDACTLAEKHGLLAVLETSAKESRNIDEVFVLMAKELIA--------- 181
Query: 420 ERKSSIRLSEETL-----RDDQPKKLVPADKVSTYCWC 452
++S+ L E+ +D P + ST C C
Sbjct: 182 --RNSLHLYGESAQQGLSQDSSPVLVAQVPNESTRCTC 217
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDS VGKT VQ F + ++ +NT+GVDF+ + L + G+ VK+Q+WD
Sbjct: 18 FKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSL---EIDGKKVKMQVWD 72
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 100 PRPSD--AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
R SD + + K+++IGDS VGKT VQ F + ++ +NT+GVDF+ + L
Sbjct: 7 SRRSDENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSL 59
>gi|301764549|ref|XP_002917698.1| PREDICTED: ras-related protein Rab-43-like [Ailuropoda melanoleuca]
Length = 218
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 98/160 (61%), Gaps = 8/160 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD AGQ
Sbjct: 27 LVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWDTAGQ 83
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ +++ YY++++G I+ +D+T R SF SV W D+ G+ + LL+ +K
Sbjct: 84 ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA----GSNIVQLLIGNKS 139
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL + R+V + E +++ Y+ + IE S+K+ +E++
Sbjct: 140 DLSELREVPLAEAQSLVEHYDILCAIETSAKDSSNVEEAF 179
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 27 LVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWD 79
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ ++++GD++VGKT VQ F F + +T+GVDF+ K L
Sbjct: 25 ISLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTL 66
>gi|195452908|ref|XP_002073553.1| GK14177 [Drosophila willistoni]
gi|194169638|gb|EDW84539.1| GK14177 [Drosophila willistoni]
Length = 207
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS+VGKTS + +V +F + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVV---VNDRVVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T SF+++ W+ + + N P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTAPNSFKNLDSWRDEFLIQASPRNPEHFPFVVLGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
DL +RQV + C N + + E S+KE + +E M F + I +++EA
Sbjct: 128 DLDNRQVSTRRAQQWCQSKNDIPYYETSAKEGINVE--MAF---QTIAKNALDQEA 178
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 33/43 (76%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+++LK++++GDS+VGKTS + +V +F + YK T+G DF TK
Sbjct: 6 KSLLKVIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTK 48
>gi|195144966|ref|XP_002013467.1| GL23391 [Drosophila persimilis]
gi|198477435|ref|XP_002136615.1| GA29225 [Drosophila pseudoobscura pseudoobscura]
gi|194102410|gb|EDW24453.1| GL23391 [Drosophila persimilis]
gi|198142907|gb|EDY71619.1| GA29225 [Drosophila pseudoobscura pseudoobscura]
Length = 207
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS+VGKTS + +V +F + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVV---VNDRVVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T SF+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTAPNSFKNLDSWRDEFLIQASPRDPEHFPFVVLGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
DL +RQV + C N + + E S+KE + +E M F + I +E+EA
Sbjct: 128 DLDNRQVSTRRAQQWCQSKNDIPYYETSAKEGINVE--MAF---QTIAKNALEQEA 178
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS+VGKTS + +V +F + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVV---VNDRVVTMQIWD 63
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 33/43 (76%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+++LK++++GDS+VGKTS + +V +F + YK T+G DF TK
Sbjct: 6 KSLLKVIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTK 48
>gi|6679593|ref|NP_033027.1| ras-related protein Rab-3A [Mus musculus]
gi|61098195|ref|NP_037150.2| ras-related protein Rab-3A [Rattus norvegicus]
gi|178056554|ref|NP_001116651.1| ras-related protein Rab-3A [Sus scrofa]
gi|187936991|ref|NP_001120756.1| ras-related protein Rab-3A [Ovis aries]
gi|261862303|ref|NP_001159871.1| ras-related protein Rab-3A [Mus musculus]
gi|73986147|ref|XP_541942.2| PREDICTED: ras-related protein Rab-3A [Canis lupus familiaris]
gi|149757273|ref|XP_001503278.1| PREDICTED: ras-related protein Rab-3A-like [Equus caballus]
gi|301753909|ref|XP_002912772.1| PREDICTED: ras-related protein Rab-3A-like [Ailuropoda melanoleuca]
gi|344282612|ref|XP_003413067.1| PREDICTED: ras-related protein Rab-3A-like [Loxodonta africana]
gi|354473979|ref|XP_003499209.1| PREDICTED: ras-related protein Rab-3A-like [Cricetulus griseus]
gi|395847913|ref|XP_003796608.1| PREDICTED: ras-related protein Rab-3A [Otolemur garnettii]
gi|410950864|ref|XP_003982122.1| PREDICTED: ras-related protein Rab-3A [Felis catus]
gi|51702793|sp|P63012.1|RAB3A_RAT RecName: Full=Ras-related protein Rab-3A
gi|51702798|sp|P63011.1|RAB3A_MOUSE RecName: Full=Ras-related protein Rab-3A
gi|122064948|sp|Q06AU3.1|RAB3A_PIG RecName: Full=Ras-related protein Rab-3A
gi|2342528|emb|CAA51470.1| low molecular weight GTP-binding protein [Mus musculus]
gi|12837856|dbj|BAB23976.1| unnamed protein product [Mus musculus]
gi|31566349|gb|AAH53519.1| Rab3a protein [Mus musculus]
gi|56270582|gb|AAH87580.1| RAB3A, member RAS oncogene family [Rattus norvegicus]
gi|74177523|dbj|BAE34630.1| unnamed protein product [Mus musculus]
gi|74187365|dbj|BAE36661.1| unnamed protein product [Mus musculus]
gi|112292943|dbj|BAF02849.1| Rab3A [Mus musculus]
gi|115394766|gb|ABI97177.1| Rab-3A [Sus scrofa]
gi|148696919|gb|EDL28866.1| RAB3A, member RAS oncogene family, isoform CRA_a [Mus musculus]
gi|148696920|gb|EDL28867.1| RAB3A, member RAS oncogene family, isoform CRA_a [Mus musculus]
gi|149036066|gb|EDL90732.1| RAB3A, member RAS oncogene family [Rattus norvegicus]
gi|186886450|gb|ACC93601.1| Rab3A [Ovis aries]
gi|281343531|gb|EFB19115.1| hypothetical protein PANDA_000545 [Ailuropoda melanoleuca]
gi|344241347|gb|EGV97450.1| Ras-related protein Rab-3A [Cricetulus griseus]
Length = 220
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 101/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E + + E S+K+++ ++ + LVD +IC K E
Sbjct: 136 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEKMSE 189
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 77
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 13 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 64
>gi|395520361|ref|XP_003764303.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-39A
[Sarcophilus harrisii]
Length = 220
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 102/185 (55%), Gaps = 17/185 (9%)
Query: 232 TLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKN----TVGVDFSTKLLSHKKY 287
+ I I + +++ GDSTVGK+ + F Q +F TVGVDF ++LL +
Sbjct: 3 AMEAIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGMLSPACDPTVGVDFFSRLLEIEP- 61
Query: 288 GGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCIL 347
G+ +KLQ+WD AGQ+R+ ++R YY+NS G ++FD+TNRKSFE V W L+ +
Sbjct: 62 -GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRKSFEHVRDW---LEEAKMY 117
Query: 348 DNGAMLPCLLLASKCDL-PDRQV---EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNF 403
+ LL+ KCDL RQV E ++ A C M +IE S+K+ +E+S
Sbjct: 118 VQPFRIVFLLVGHKCDLVSQRQVSREEAEKMSAACG----MKYIETSAKDATNVEESFTI 173
Query: 404 LVDRI 408
L I
Sbjct: 174 LTRDI 178
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYK----NTVGVDFSTKLLSHKKYGGRPVKLQI 226
+ +++ GDSTVGK+ + F Q +F TVGVDF ++LL + G+ +KLQ+
Sbjct: 12 FRLIVIGDSTVGKSCLLHRFTQGRFPGMLSPACDPTVGVDFFSRLLEIEP--GKRIKLQL 69
Query: 227 WD 228
WD
Sbjct: 70 WD 71
>gi|345568482|gb|EGX51376.1| hypothetical protein AOL_s00054g446 [Arthrobotrys oligospora ATCC
24927]
Length = 216
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 5/176 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF +YK T+G DF TK + R V +QIWD AGQ
Sbjct: 20 VIILGDSGVGKTSLMNQYVNKKFSASYKATIGADFLTKEVL---VDDRLVTMQIWDTAGQ 76
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+ N+KSFE++ W+ + + + P +++ +K
Sbjct: 77 ERFQSLGVAFYRGADCCVLVYDVNNQKSFETLDSWRDEFLIQASPRDADSFPFVVIGNKI 136
Query: 363 DLPD--RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
D+ D RQV A C + + E S+KE + +E + + + + EE
Sbjct: 137 DVDDGKRQVPQKRAMAFCQSKGNLPYFETSAKEAINVEQAFEVIARHALAQEEAEE 192
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 29/40 (72%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
LK++++GDS VGKTS + +V KF +YK T+G DF TK
Sbjct: 18 LKVIILGDSGVGKTSLMNQYVNKKFSASYKATIGADFLTK 57
>gi|195037102|ref|XP_001990004.1| GH18481 [Drosophila grimshawi]
gi|193894200|gb|EDV93066.1| GH18481 [Drosophila grimshawi]
Length = 207
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 102/191 (53%), Gaps = 3/191 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS+VGKTS + +V +F + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVV---VNDRVVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T SF+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTAPNSFKNLDSWRDEFLIQASPRDPEHFPFVVLGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL +RQV + C N + + E S+KE + +E + + + + E +
Sbjct: 128 DLDNRQVSTRRAQQWCQSKNDIPYYETSAKEGINVEMAFQTIAKNALEQETEAELINDFP 187
Query: 423 SSIRLSEETLR 433
IRL+ E R
Sbjct: 188 DQIRLNSENNR 198
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS+VGKTS + +V +F + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVV---VNDRVVTMQIWD 63
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 33/43 (76%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+++LK++++GDS+VGKTS + +V +F + YK T+G DF TK
Sbjct: 6 KSLLKVIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTK 48
>gi|66514595|ref|XP_623213.1| PREDICTED: ras-related protein Rab-3 isoform 2 [Apis mellifera]
Length = 269
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 101/177 (57%), Gaps = 12/177 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 68 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWDT 123
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDS-KCILDNGAMLPCLLL 358
AGQ+RY ++ YY+ + G I+M+D+TN +SF SV W + + C DN + +L+
Sbjct: 124 AGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWVTQIKTYSC--DNAQV---ILV 178
Query: 359 ASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
+KCD+ D +V E + + E S+KE++ I+ LVD IIC K E
Sbjct: 179 GNKCDMEDERVITTERGKQLADQLGVQFFETSAKENINIKTVFEQLVD-IICDKMSE 234
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 68 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWD 122
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 88 SPSPRASVIGFEPR------PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
+P R + G +P+ + + + K+L+IG+S+VGKTS++ + + F + +TV
Sbjct: 41 TPRDRRLMAGQDPKFQKEAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV 100
Query: 142 GVDFSTK-LLSHKK 154
G+DF K + H K
Sbjct: 101 GIDFKVKTVFRHDK 114
>gi|195108353|ref|XP_001998757.1| GI24142 [Drosophila mojavensis]
gi|193915351|gb|EDW14218.1| GI24142 [Drosophila mojavensis]
Length = 207
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS+VGKTS + +V +F + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVV---VNDRVVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T SF+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTAPNSFKNLDSWRDEFLIQASPRDPEHFPFVVLGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
DL +RQV + C N + + E S+KE + +E M F + I +E+EA
Sbjct: 128 DLDNRQVSTRRAQQWCQSKNDIPYYETSAKEGINVE--MAF---QTIAKNALEQEA 178
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS+VGKTS + +V +F + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVV---VNDRVVTMQIWD 63
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 33/43 (76%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+++LK++++GDS+VGKTS + +V +F + YK T+G DF TK
Sbjct: 6 KSLLKVIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTK 48
>gi|417408831|gb|JAA50951.1| Putative rab subfamily protein of small gtpase, partial [Desmodus
rotundus]
Length = 228
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 101/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 31 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 87
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 88 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 143
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E + + E S+K+++ ++ + LVD +IC K E
Sbjct: 144 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEKMSE 197
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 31 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 85
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 21 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 72
>gi|354467588|ref|XP_003496251.1| PREDICTED: ras-related protein Rab-3C-like [Cricetulus griseus]
Length = 228
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 113/194 (58%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 32 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 88
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 89 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 144
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D R + + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 145 KCDMEDERIISTERGQHLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 200
Query: 420 ERKSSIRLSEETLR 433
E +I ++++ R
Sbjct: 201 ETDPAITAAKQSTR 214
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 32 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 86
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 31 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 73
>gi|340382696|ref|XP_003389854.1| PREDICTED: ras-related protein Rab-3-like [Amphimedon
queenslandica]
Length = 218
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 116/214 (54%), Gaps = 18/214 (8%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ G+S VGKT+YV + + F + +TVG+DF K L + + +KLQIWD A
Sbjct: 21 YKILMVGNSGVGKTAYVSRYCDDHFNPAFISTVGIDFRVKNLIRNQ---KRIKLQIWDTA 77
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY + G I+MFDLT+ +F + W + + L+N + LL+ +
Sbjct: 78 GQERYQAITTAYYHGAMGFIVMFDLTSEDTFSACRMWIQQI-KEMALENAII---LLIGN 133
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K DL RQV IE + + E S+KE+ I++S +LVD I +++M E +
Sbjct: 134 KVDLTAQRQVSTESIEEFTDSLG-IHFFETSAKENTNIKESAEYLVDAI--TQKM-SETI 189
Query: 420 ERKSSIRLSEETLRDDQPKKLVPA-DKVSTYCWC 452
E+ + T R +P++ A +K S C C
Sbjct: 190 EKNPNF-----TPRGVKPRETAVANEKPSGSCGC 218
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
Y IL+ G+S VGKT+YV + + F + +TVG+DF K L + + +KLQIWD
Sbjct: 21 YKILMVGNSGVGKTAYVSRYCDDHFNPAFISTVGIDFRVKNLIRNQ---KRIKLQIWD 75
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KIL++G+S VGKT+YV + + F + +TVG+DF K L
Sbjct: 20 MYKILMVGNSGVGKTAYVSRYCDDHFNPAFISTVGIDFRVKNL 62
>gi|348500494|ref|XP_003437808.1| PREDICTED: ras-related protein Rab-3A-like [Oreochromis niloticus]
Length = 219
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 102/176 (57%), Gaps = 10/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 22 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 79 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 134
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V E + Q F + E S+K+++ ++ + LVD IIC + E
Sbjct: 135 KCDMEDERVVAAERGRQLSEQLGF-EFFEASAKDNINVKQTFERLVD-IICERMAE 188
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 22 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 76
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 12 ESTDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 63
>gi|399163159|gb|AFP33155.1| rab-19, partial [Caenorhabditis elegans]
Length = 209
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 108/185 (58%), Gaps = 10/185 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD VGKT VQ F F+D T+GVDF+ K L G+ VKLQIWD
Sbjct: 10 FKIVLVGDMGVGKTCVVQRFRNGTFVDRQGTTIGVDFTMKTLVVD---GKRVKLQIWDTG 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G ++ +D+T ++SF S+ +W D+ SK N + LL+ +
Sbjct: 67 GQERFRTITQSYYRSANGIVLCYDITCKQSFGSLQRWIDDV-SKFAAPN---VVKLLIGT 122
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL D R +E E E + + +E S+K ++ ++++ FL I ++ ++ V
Sbjct: 123 KCDLEDQRAIEAEEAEMLQRANGMFAMLETSAKGNVNVDNA--FLELATILKRQYDQGVV 180
Query: 420 ERKSS 424
E+ SS
Sbjct: 181 EQGSS 185
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD VGKT VQ F F+D T+GVDF+ K L G+ VKLQIWD
Sbjct: 10 FKIVLVGDMGVGKTCVVQRFRNGTFVDRQGTTIGVDFTMKTLVVD---GKRVKLQIWD 64
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI+++GD VGKT VQ F F+D T+GVDF+ K L
Sbjct: 9 LFKIVLVGDMGVGKTCVVQRFRNGTFVDRQGTTIGVDFTMKTL 51
>gi|195392371|ref|XP_002054831.1| GJ24655 [Drosophila virilis]
gi|194152917|gb|EDW68351.1| GJ24655 [Drosophila virilis]
Length = 207
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 102/191 (53%), Gaps = 3/191 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS+VGKTS + +V +F + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVV---VNDRVVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T SF+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTAPNSFKNLDSWRDEFLIQASPRDPEHFPFVVLGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL +RQV + C N + + E S+KE + +E + + + + E +
Sbjct: 128 DLDNRQVSTRRAQQWCQSKNDIPYYETSAKEGINVEMAFQTIAKNALEQETEAELINDFP 187
Query: 423 SSIRLSEETLR 433
IRL+ E R
Sbjct: 188 DQIRLNSENNR 198
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS+VGKTS + +V +F + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVV---VNDRVVTMQIWD 63
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S +++LK++++GDS+VGKTS + +V +F + YK T+G DF TK
Sbjct: 3 SRKKSLLKVIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTK 48
>gi|4506367|ref|NP_002857.1| ras-related protein Rab-3A [Homo sapiens]
gi|383873155|ref|NP_001244696.1| ras-related protein Rab-3A [Macaca mulatta]
gi|114676111|ref|XP_512511.2| PREDICTED: ras-related protein Rab-3A isoform 3 [Pan troglodytes]
gi|296233287|ref|XP_002761948.1| PREDICTED: ras-related protein Rab-3A [Callithrix jacchus]
gi|397493887|ref|XP_003817827.1| PREDICTED: ras-related protein Rab-3A isoform 1 [Pan paniscus]
gi|397493889|ref|XP_003817828.1| PREDICTED: ras-related protein Rab-3A isoform 2 [Pan paniscus]
gi|402904778|ref|XP_003915217.1| PREDICTED: ras-related protein Rab-3A [Papio anubis]
gi|403303431|ref|XP_003942330.1| PREDICTED: ras-related protein Rab-3A [Saimiri boliviensis
boliviensis]
gi|410053467|ref|XP_003953458.1| PREDICTED: ras-related protein Rab-3A [Pan troglodytes]
gi|426387780|ref|XP_004060340.1| PREDICTED: ras-related protein Rab-3A [Gorilla gorilla gorilla]
gi|131801|sp|P20336.1|RAB3A_HUMAN RecName: Full=Ras-related protein Rab-3A
gi|75075791|sp|Q4R4R9.1|RAB3A_MACFA RecName: Full=Ras-related protein Rab-3A
gi|7684383|gb|AAF67385.1|AC068499_1 RAB3A, member RAS oncogene family [Homo sapiens]
gi|20379038|gb|AAM21079.1|AF498931_1 small GTP binding protein RAB3A [Homo sapiens]
gi|550064|gb|AAA60242.1| GTP-binding protein [Homo sapiens]
gi|5678931|gb|AAD46811.1| GTP-binding protein [Homo sapiens]
gi|15079994|gb|AAH11782.1| RAB3A, member RAS oncogene family [Homo sapiens]
gi|67971128|dbj|BAE01906.1| unnamed protein product [Macaca fascicularis]
gi|119605078|gb|EAW84672.1| RAB3A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119605079|gb|EAW84673.1| RAB3A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119605080|gb|EAW84674.1| RAB3A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|158260141|dbj|BAF82248.1| unnamed protein product [Homo sapiens]
gi|190689931|gb|ACE86740.1| RAB3A, member RAS oncogene family protein [synthetic construct]
gi|190691303|gb|ACE87426.1| RAB3A, member RAS oncogene family protein [synthetic construct]
gi|208967240|dbj|BAG73634.1| RAB3A, member RAS oncogene family [synthetic construct]
gi|351701226|gb|EHB04145.1| Ras-related protein Rab-3A [Heterocephalus glaber]
gi|355703320|gb|EHH29811.1| Ras-related protein Rab-3A [Macaca mulatta]
gi|355763570|gb|EHH62193.1| Ras-related protein Rab-3A [Macaca fascicularis]
gi|380783409|gb|AFE63580.1| ras-related protein Rab-3A [Macaca mulatta]
gi|383413957|gb|AFH30192.1| ras-related protein Rab-3A [Macaca mulatta]
gi|384944492|gb|AFI35851.1| ras-related protein Rab-3A [Macaca mulatta]
gi|410216084|gb|JAA05261.1| RAB3A, member RAS oncogene family [Pan troglodytes]
gi|410250372|gb|JAA13153.1| RAB3A, member RAS oncogene family [Pan troglodytes]
gi|410295286|gb|JAA26243.1| RAB3A, member RAS oncogene family [Pan troglodytes]
gi|410337961|gb|JAA37927.1| RAB3A, member RAS oncogene family [Pan troglodytes]
Length = 220
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 101/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E + + E S+K+++ ++ + LVD +IC K E
Sbjct: 136 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEKMSE 189
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 77
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 13 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 64
>gi|432942757|ref|XP_004083059.1| PREDICTED: ras-related protein Rab-19-like isoform 1 [Oryzias
latipes]
Length = 222
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 100/170 (58%), Gaps = 8/170 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD+ VGKT VQ F F + +NT+GVDF+ + L + G+ VK+Q+WD A
Sbjct: 16 FKIILIGDTNVGKTCVVQNFKSGVFSEKQQNTIGVDFTVRTLDIE---GKKVKMQVWDTA 72
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ G +I +D+T R +F+SV W +++ L A + +L+ +
Sbjct: 73 GQERFRTITQSYYRSAHGAMIAYDITRRATFDSVSHWIREVE----LYGAANVVLVLIGN 128
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL +RQV + + + ++ +E S+K +E++ + ++
Sbjct: 129 KCDLEEERQVRFQDACNLAKEIGILAALETSAKASQNVEEAFVMMARELM 178
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD+ VGKT VQ F F + +NT+GVDF+ + L + G+ VK+Q+WD
Sbjct: 16 FKIILIGDTNVGKTCVVQNFKSGVFSEKQQNTIGVDFTVRTLDIE---GKKVKMQVWD 70
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGD+ VGKT VQ F F + +NT+GVDF+ + L
Sbjct: 15 LFKIILIGDTNVGKTCVVQNFKSGVFSEKQQNTIGVDFTVRTL 57
>gi|162760|gb|AAA30416.1| GTP-binding protein [Bos taurus]
Length = 220
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 101/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-SDNAQV---LLVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E + + E S+K+++ ++ + LVD +IC K E
Sbjct: 136 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEKMSE 189
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 77
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 13 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 64
>gi|348519351|ref|XP_003447194.1| PREDICTED: ras-related protein Rab-19-like [Oreochromis niloticus]
Length = 220
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 98/175 (56%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT VQ F F++ +NT+GVDF+ + L G+ VK+Q+WD A
Sbjct: 16 FKIILVGDSDVGKTCVVQSFKSGIFIEKQQNTIGVDFTVRTLD---IDGKKVKMQVWDTA 72
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ G ++ +D+T R +FESV W +++ L A + +L+ +
Sbjct: 73 GQERFRTITQSYYRSAHGAMVAYDITRRSTFESVPHWIREVE----LYGAASVVLILIGN 128
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
K DL RQV + + ++ +E S+KE IE + + ++ M
Sbjct: 129 KSDLHAKRQVLFEDACNLAENSGVLAALETSAKEAQNIEAAFILMARELMARNGM 183
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT VQ F F++ +NT+GVDF+ + L G+ VK+Q+WD
Sbjct: 16 FKIILVGDSDVGKTCVVQSFKSGIFIEKQQNTIGVDFTVRTLD---IDGKKVKMQVWD 70
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI+++GDS VGKT VQ F F++ +NT+GVDF+ + L
Sbjct: 15 LFKIILVGDSDVGKTCVVQSFKSGIFIEKQQNTIGVDFTVRTL 57
>gi|156403887|ref|XP_001640139.1| predicted protein [Nematostella vectensis]
gi|156227272|gb|EDO48076.1| predicted protein [Nematostella vectensis]
Length = 104
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 72/104 (69%)
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
I+GQ++Y M+R YY+++ CIIMFDLT++ +F VV WK DLDSKC L +G ++PC+L+
Sbjct: 1 ISGQEKYTSMTRAYYRDATACIIMFDLTSQPTFSKVVFWKEDLDSKCKLPDGKLIPCILV 60
Query: 359 ASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMN 402
+K DL R V I+ +C ++F+ W E+S KE + + +++
Sbjct: 61 GNKSDLSARPVPKQTIDKLCRDHSFLGWTEMSVKEEVNVSETVE 104
>gi|167384556|ref|XP_001737005.1| GTP-binding protein YPTM2 [Entamoeba dispar SAW760]
gi|165900423|gb|EDR26744.1| GTP-binding protein YPTM2, putative [Entamoeba dispar SAW760]
Length = 206
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 102/180 (56%), Gaps = 8/180 (4%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
T+ ILI G+S VGKT+ ++ + +N+F D +T+GVDF +++++ Y G+ VKLQ+WD
Sbjct: 14 TFKILIIGESAVGKTAILERYCENEFHDELISTIGVDFKSRIIN---YQGKTVKLQLWDT 70
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ ++ YY+ + GC+I++D+T+ SFE + W ++L+ D L++
Sbjct: 71 AGQERFRNITSSYYRGTHGCLIVYDVTDITSFEKITYWINELN-----DCSTKPEILVVG 125
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
+K D D V E C + + S+K +E N LV+ I +K + E V
Sbjct: 126 NKIDSEDAVVTSEVAEKFCRLSGGLRSMRCSAKTGENVESIFNVLVESISKNKSIMERLV 185
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 43/59 (72%), Gaps = 3/59 (5%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++ ILI G+S VGKT+ ++ + +N+F D +T+GVDF +++++ Y G+ VKLQ+WD
Sbjct: 14 TFKILIIGESAVGKTAILERYCENEFHDELISTIGVDFKSRIIN---YQGKTVKLQLWD 69
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 96 IGFEPR-PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 153
+ EP A+ KIL+IG+S VGKT+ ++ + +N+F D +T+GVDF +++++++
Sbjct: 1 MNIEPHLQQQADMTFKILIIGESAVGKTAILERYCENEFHDELISTIGVDFKSRIINYQ 59
>gi|301095181|ref|XP_002896692.1| Rab11 family GTPase, putative [Phytophthora infestans T30-4]
gi|262108831|gb|EEY66883.1| Rab11 family GTPase, putative [Phytophthora infestans T30-4]
Length = 365
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 99/180 (55%), Gaps = 12/180 (6%)
Query: 230 YCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG 289
+ L PI +++ GDS VGK++ V F +NK++ + TVG +F+TK + + G
Sbjct: 86 FSALPPITESILKVVLIGDSGVGKSNLVMRFTKNKYMPHSVQTVGFEFATKTI---RVGD 142
Query: 290 RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDN 349
R ++ QIWD AGQ+R+ ++ YY+N+ G +I++D+TNR SFE V W + +
Sbjct: 143 RRLRAQIWDTAGQERFQSLTAAYYRNAVGAMIVYDITNRSSFEHVTGWLAQVHE----HS 198
Query: 350 GAMLPCLLLASKCDLP----DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLV 405
L +L+ +KCDL RQV E +++ M ++E S+ + + D+ L+
Sbjct: 199 HESLVLILVGNKCDLAHLPESRQVSTLEAARFAAKHS-MEFLETSALDATNVVDAFKKLI 257
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Query: 83 LCKSNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142
L SNSP F P E++LK+++IGDS VGK++ V F +NK++ + TVG
Sbjct: 78 LSASNSPR-------FSALPPITESILKVVLIGDSGVGKSNLVMRFTKNKYMPHSVQTVG 130
Query: 143 VDFSTKLL 150
+F+TK +
Sbjct: 131 FEFATKTI 138
>gi|126722751|ref|NP_001075503.1| ras-related protein Rab-7a [Oryctolagus cuniculus]
gi|6685839|sp|O97572.1|RAB7A_RABIT RecName: Full=Ras-related protein Rab-7a
gi|4105817|gb|AAD02564.1| Rab7 [Oryctolagus cuniculus]
Length = 207
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK---EVMVDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ +S +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLSVAFYRGADCCVLVFDVTAPNTFKTLDSWRLEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A + N + + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWSYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK---EVMVDDRLVTMQIWD 63
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|57008|emb|CAA30005.1| unnamed protein product [Rattus norvegicus]
Length = 220
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 101/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E + + E S+K+++ ++ + LVD +IC K E
Sbjct: 136 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEKMSE 189
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 77
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 13 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 64
>gi|406602416|emb|CCH46032.1| hypothetical protein BN7_5619 [Wickerhamomyces ciferrii]
Length = 205
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 105/187 (56%), Gaps = 5/187 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS +Q FV KF + YK T+G DF TK L+ + V +Q+WD AGQ
Sbjct: 11 VIILGDSGVGKTSLMQQFVNGKFSNQYKATIGADFLTKELT---IDDKSVTMQLWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+TN+KSFE++ WK + + + N P +++ +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTNQKSFENISLWKDEFLIQANVKNPENFPFVIIGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNF--MSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
D+ + + IN +A N + + S+KE + I+ + + + + + +E E
Sbjct: 128 DVDENKKVINNKKAQQFANNLGNLPLFQTSAKEAVNIDQAFDVIARNALQQEENDEFNDE 187
Query: 421 RKSSIRL 427
+I +
Sbjct: 188 FNDAINI 194
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 36/49 (73%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
S +T+LK++++GDS VGKTS +Q FV KF + YK T+G DF TK L+
Sbjct: 3 SKKKTLLKVIILGDSGVGKTSLMQQFVNGKFSNQYKATIGADFLTKELT 51
>gi|17543864|ref|NP_502576.1| Protein RAB-19 [Caenorhabditis elegans]
gi|6425503|emb|CAB60605.1| Protein RAB-19 [Caenorhabditis elegans]
Length = 210
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 108/185 (58%), Gaps = 10/185 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD VGKT VQ F F+D T+GVDF+ K L G+ VKLQIWD
Sbjct: 11 FKIVLVGDMGVGKTCVVQRFRNGTFVDRQGTTIGVDFTMKTLVVD---GKRVKLQIWDTG 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G ++ +D+T ++SF S+ +W D+ SK N + LL+ +
Sbjct: 68 GQERFRTITQSYYRSANGIVLCYDITCKQSFGSLQRWIDDV-SKFAAPN---VVKLLIGT 123
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL D R +E E E + + +E S+K ++ ++++ FL I ++ ++ V
Sbjct: 124 KCDLEDQRAIEAEEAEMLQRANGMFAMLETSAKGNVNVDNA--FLELATILKRQYDQGVV 181
Query: 420 ERKSS 424
E+ SS
Sbjct: 182 EQGSS 186
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD VGKT VQ F F+D T+GVDF+ K L G+ VKLQIWD
Sbjct: 11 FKIVLVGDMGVGKTCVVQRFRNGTFVDRQGTTIGVDFTMKTLVVD---GKRVKLQIWD 65
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI+++GD VGKT VQ F F+D T+GVDF+ K L
Sbjct: 10 LFKIVLVGDMGVGKTCVVQRFRNGTFVDRQGTTIGVDFTMKTL 52
>gi|350594328|ref|XP_003359827.2| PREDICTED: ras-related protein Rab-3C-like isoform 1 [Sus scrofa]
Length = 225
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 112/194 (57%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 29 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 85
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 86 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 141
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D R + + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 142 KCDMEDERVISTERGQHLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 197
Query: 420 ERKSSIRLSEETLR 433
E +I +++ R
Sbjct: 198 ETDPAITAAKQNTR 211
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 29 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 83
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 28 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 70
>gi|345492946|ref|XP_003426961.1| PREDICTED: ras-related protein Rab-43-like [Nasonia vitripennis]
Length = 221
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 98/165 (59%), Gaps = 10/165 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD GKT VQ F F+ + NT+GVDFS K + G+ VKLQIWD A
Sbjct: 23 FKIVLIGDCGTGKTCIVQKFRSGNFIQRHGNTIGVDFSMKTV---LVDGKRVKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+++D+T R SF S+ +W ++ + + +L+ +
Sbjct: 80 GQERFRTITQSYYRSANGVILVYDITKRSSFLSLQRWIDEIRRY----TSSHVLLILVGN 135
Query: 361 KCDLPD-RQVEINEIEAVCHQY-NFMSWIEVSSKEHLMIEDSMNF 403
KCDL D R+V+ E EAVC +E S+KE+ I DS+ F
Sbjct: 136 KCDLEDAREVQKAEAEAVCEYLPEVFRIVETSAKENTNI-DSIFF 179
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD GKT VQ F F+ + NT+GVDFS K + G+ VKLQIWD
Sbjct: 23 FKIVLIGDCGTGKTCIVQKFRSGNFIQRHGNTIGVDFSMKTV---LVDGKRVKLQIWD 77
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ KI++IGD GKT VQ F F+ + NT+GVDFS K
Sbjct: 22 LFKIVLIGDCGTGKTCIVQKFRSGNFIQRHGNTIGVDFSMK 62
>gi|324518786|gb|ADY47204.1| Ras-related protein Rab-10 [Ascaris suum]
Length = 200
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 112/186 (60%), Gaps = 8/186 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKTS + F ++ F Y +T+G+DF K + + G+ +KLQIWD A
Sbjct: 9 FKLLLIGDSGVGKTSIIHRFTEDAFSPTYISTIGIDFKIKTIEVR---GKRIKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+T+ SF+++ +W ++ L + +LLA+
Sbjct: 66 GQERFHTITTSYYRGAMGIVVVYDITDEGSFDNIAKWLRYIE----LHASEDVQKILLAN 121
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
KCD+ +R+ +E + + + ++E S++ ++ I+ + L + I+ +K +E VE
Sbjct: 122 KCDVIERRAVSSERGEKIAKAHGIKFLETSARSNINIQKAFGDLAEAIL-NKVTGDEQVE 180
Query: 421 RKSSIR 426
+ +++R
Sbjct: 181 KTATVR 186
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKTS + F ++ F Y +T+G+DF K + + G+ +KLQIWD
Sbjct: 9 FKLLLIGDSGVGKTSIIHRFTEDAFSPTYISTIGIDFKIKTIEVR---GKRIKLQIWD 63
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS VGKTS + F ++ F Y +T+G+DF K +
Sbjct: 8 LFKLLLIGDSGVGKTSIIHRFTEDAFSPTYISTIGIDFKIKTI 50
>gi|1045640|gb|AAC52704.1| rab3c, partial [Rattus norvegicus]
Length = 195
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 111/194 (57%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 8 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 64
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN +L +
Sbjct: 65 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNA---QVILAGN 120
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D R V + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 121 KCDMEDERVVSTERGQRLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 176
Query: 420 ERKSSIRLSEETLR 433
E +I ++++ R
Sbjct: 177 ETDPAITAAKQSTR 190
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 8 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 62
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K
Sbjct: 7 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVK 47
>gi|397514337|ref|XP_003827446.1| PREDICTED: ras-related protein Rab-3C [Pan paniscus]
Length = 227
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 113/194 (58%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 87
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 88 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 143
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D +V E + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 144 KCDMEDERVISTERGQHLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 199
Query: 420 ERKSSIRLSEETLR 433
E +I +++ R
Sbjct: 200 ETDPAITAAKQNTR 213
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 85
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 72
>gi|350594330|ref|XP_003483878.1| PREDICTED: ras-related protein Rab-3C-like isoform 2 [Sus scrofa]
Length = 227
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 113/194 (58%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 87
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 88 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 143
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D +V E + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 144 KCDMEDERVISTERGQHLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 199
Query: 420 ERKSSIRLSEETLR 433
E +I +++ R
Sbjct: 200 ETDPAITAAKQNTR 213
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 85
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 72
>gi|195498398|ref|XP_002096506.1| GE25707 [Drosophila yakuba]
gi|194182607|gb|EDW96218.1| GE25707 [Drosophila yakuba]
Length = 288
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 140/256 (54%), Gaps = 20/256 (7%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIY 230
+ +++ GDS VGK++ + F +N+F K+T+GV+F+T+ + G + +++ W I
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI-EVSTGAKNSRVE-WPIK 69
Query: 231 CTLSPIQ------IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 284
++ GDS VGK++ + F +N+F K+T+GV+F+T+ +
Sbjct: 70 LHPHHPPHLLCGVTSELAFVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI-- 127
Query: 285 KKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSK 344
+ G+ +K QIWD AGQ+RY ++ YY+ + G ++++D+ ++E+V +W +L
Sbjct: 128 -EVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDH 186
Query: 345 CILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM-N 402
D ++ +L+ +K DL R V +E + + N +S+IE S+ + +E + N
Sbjct: 187 A--DQNIVI--MLVGNKSDLRHLRSVPTDEAKLFAER-NGLSFIETSALDSTNVETAFQN 241
Query: 403 FLVD--RIICSKRMEE 416
L + RI+ K++ +
Sbjct: 242 ILTEIYRIVSQKQIRD 257
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 78/142 (54%), Gaps = 17/142 (11%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 159
R + + + K+++IGDS VGK++ + F +N+F K+T+GV+F+T+ + G +
Sbjct: 3 AREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI-EVSTGAKN 61
Query: 160 YGTFSPIQ-------------TPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD 206
PI+ T ++ GDS VGK++ + F +N+F K+T+GV+
Sbjct: 62 SRVEWPIKLHPHHPPHLLCGVTSELAFVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE 121
Query: 207 FSTKLLSHKKYGGRPVKLQIWD 228
F+T+ + + G+ +K QIWD
Sbjct: 122 FATRSI---EVDGKTIKAQIWD 140
>gi|27734454|sp|Q8K386.1|RAB15_MOUSE RecName: Full=Ras-related protein Rab-15
gi|20380722|gb|AAH27769.1| RAB15, member RAS oncogene family [Mus musculus]
gi|112292989|dbj|BAF02872.1| Rab15 [Mus musculus]
Length = 212
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 119/213 (55%), Gaps = 10/213 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + G V++QIWD A
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTID---VDGIKVRIQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY +++ YY+ + G +++D+++ +S++ +++W D+D + +L+ +
Sbjct: 66 GQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA----PEGVQKILIGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D RQV + + + +Y M + E S+ +L I++S L + ++ + R E + +
Sbjct: 122 KADEEQKRQVGREQGQQLAKEYG-MDFYETSACTNLNIKESFTRLTELVLQAHRKELDGL 180
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
++S L+ L +D+ K PA+ T CWC
Sbjct: 181 RTRASNELALAELEEDEGKPEGPANSSKT-CWC 212
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + G V++QIWD
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTID---VDGIKVRIQIWD 63
Score = 41.6 bits (96), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ + ++L+IGDS VGKT + F N+F ++ +T+GVDF K +
Sbjct: 6 DVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI 50
>gi|54696260|gb|AAV38502.1| RAB3A, member RAS oncogene family [synthetic construct]
gi|61368754|gb|AAX43231.1| RAB3A member RAS oncogene family [synthetic construct]
Length = 221
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 101/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E + + E S+K+++ ++ + LVD +IC K E
Sbjct: 136 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEKMSE 189
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 77
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 13 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 64
>gi|308321783|gb|ADO28034.1| ras-related protein rab-7a [Ictalurus furcatus]
Length = 207
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + + R V LQIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVE---DRLVTLQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ + + + + P L+L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPTTFKTLDSGRDEFLIQASPRDPDNFPFLVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C N M + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWCQSKNNMPYFETSAKEAISVEQAF 166
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + + R V LQIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVE---DRLVTLQIWD 63
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|198469194|ref|XP_002134246.1| GA26078 [Drosophila pseudoobscura pseudoobscura]
gi|198146758|gb|EDY72873.1| GA26078 [Drosophila pseudoobscura pseudoobscura]
Length = 204
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 108/181 (59%), Gaps = 10/181 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELR---GKKIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSFE++V+W ++D D + ++L +
Sbjct: 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANED----VEKMILGN 122
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D++V E EA+ ++ + ++E S+K + IE + L + I+ K +EA
Sbjct: 123 KCDMTDKRVVNKERGEAIAREHG-IRFMETSAKSNTNIERAFCELAEAIL-DKTSGKEAA 180
Query: 420 E 420
E
Sbjct: 181 E 181
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELR---GKKIKLQIWD 64
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS VGKT + F + F + +T+G+DF K
Sbjct: 9 LFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIK 49
>gi|145495635|ref|XP_001433810.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74831504|emb|CAI39318.1| rab_B65 [Paramecium tetraurelia]
gi|124400930|emb|CAK66413.1| unnamed protein product [Paramecium tetraurelia]
Length = 219
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 105/185 (56%), Gaps = 9/185 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+S VGK+ + + +N+F +N+ NT+GVDF TK ++ G VKLQIWD A
Sbjct: 20 FKVLLIGNSGVGKSCMLMRYSENQFTNNFYNTIGVDFKTKTIA---LGEHNVKLQIWDTA 76
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQDR+ ++ YY+ + G II++D+T+R+SFE+V W ++D + LL+ +
Sbjct: 77 GQDRFRTITCSYYRGAQGIIIVYDITDRESFENVKTWMAEIDKYA----SESVNRLLVGN 132
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D+ + R+V E + Y + + E S+K IE + + I+ + AV
Sbjct: 133 KADITERREVSYEEGLELSRLYQ-IPFYETSAKSSTNIEAAFTHITKNILNRELHNTRAV 191
Query: 420 ERKSS 424
RK+S
Sbjct: 192 VRKTS 196
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ G+S VGK+ + + +N+F +N+ NT+GVDF TK ++ G VKLQIWD
Sbjct: 20 FKVLLIGNSGVGKSCMLMRYSENQFTNNFYNTIGVDFKTKTIA---LGEHNVKLQIWD 74
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 33/44 (75%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ K+L+IG+S VGK+ + + +N+F +N+ NT+GVDF TK ++
Sbjct: 19 LFKVLLIGNSGVGKSCMLMRYSENQFTNNFYNTIGVDFKTKTIA 62
>gi|348526560|ref|XP_003450787.1| PREDICTED: ras-related protein Rab-19-like [Oreochromis niloticus]
Length = 224
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 101/170 (59%), Gaps = 8/170 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GDS VGKT +Q F F + +NT+GVDF+ + L + G+ VK+Q+WD A
Sbjct: 16 FKLVLIGDSNVGKTCVIQNFKSGIFSEKQQNTIGVDFTVRTLDIE---GKKVKMQVWDTA 72
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ G +I +D+T R +F+SV W +++ L A + +L+ +
Sbjct: 73 GQERFRTITQSYYRSAHGAVIAYDITRRSTFDSVKHWIKEVE----LYGAANVVLVLIGN 128
Query: 361 KCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL +R+V E + Q ++ +E S+K+ ++++ + ++
Sbjct: 129 KCDLEQEREVPFQEACNLAKQKGILAALETSAKDSQNVDEAFMLMARELL 178
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDS VGKT +Q F F + +NT+GVDF+ + L + G+ VK+Q+WD
Sbjct: 16 FKLVLIGDSNVGKTCVIQNFKSGIFSEKQQNTIGVDFTVRTLDIE---GKKVKMQVWD 70
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 100 PRPSDAET---VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P P +T + K+++IGDS VGKT +Q F F + +NT+GVDF+ + L
Sbjct: 4 PAPEHDDTFDFLFKLVLIGDSNVGKTCVIQNFKSGIFSEKQQNTIGVDFTVRTL 57
>gi|319401899|ref|NP_001187352.1| ras-related protein Rab-35 [Ictalurus punctatus]
gi|308322789|gb|ADO28532.1| ras-related protein rab-35 [Ictalurus punctatus]
Length = 201
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 118/197 (59%), Gaps = 13/197 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+ +SF +V +W H+++ C D+ + +L+ +
Sbjct: 66 GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DD---VCRILVGN 120
Query: 361 KCDLPDRQ-VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR---MEE 416
K D P+ + VE N+ + Q + + E S+KE++ +E+ N + + ++ +K+ ++
Sbjct: 121 KNDDPNSKVVETNDAQKFAEQMS-IRLFETSAKENINVEEMFNCITELVLWAKKESVAKQ 179
Query: 417 EAVERKSSIRLSEETLR 433
+++ I+LS+ + R
Sbjct: 180 HQLQQNDVIKLSKNSKR 196
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWD 63
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
D + + K+L+IGDS VGK+S + F N F +Y T+GVDF +
Sbjct: 2 ARDYDYLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIR 48
>gi|193652503|ref|XP_001951946.1| PREDICTED: ras-related protein Rab-35-like [Acyrthosiphon pisum]
Length = 202
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 100/177 (56%), Gaps = 8/177 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +Y T+GVDF + + G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSLLVRFADNTFSGSYITTIGVDFKIRTVI---VDGEKVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D++N SF +V +W H++D C ++ +L+ +
Sbjct: 66 GQERFRTITSTYYRGTHGVIVVYDVSNGDSFANVKRWLHEIDQNC-----EVVNRILVGN 120
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
K D PDR+V + E + E S+K+++ +E + +++ +K+ +E
Sbjct: 121 KNDAPDRKVVLTEDAQRFADQMGIQLYETSAKDNINVEQMFMSITKQVLRNKKETKE 177
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F +Y T+GVDF + + G VKLQIWD
Sbjct: 9 FKLLIIGDSGVGKSSLLVRFADNTFSGSYITTIGVDFKIRTVI---VDGEKVKLQIWD 63
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS VGK+S + F N F +Y T+GVDF + +
Sbjct: 8 LFKLLIIGDSGVGKSSLLVRFADNTFSGSYITTIGVDFKIRTV 50
>gi|431918473|gb|ELK17694.1| Ras-related protein Rab-3C [Pteropus alecto]
Length = 219
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 112/194 (57%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 135
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D R + + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 136 KCDMEDERVISTERGQHLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 191
Query: 420 ERKSSIRLSEETLR 433
E +I +++ R
Sbjct: 192 ETDPAITAAKQNTR 205
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 77
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 64
>gi|395516732|ref|XP_003762541.1| PREDICTED: ras-related protein Rab-43-like [Sarcophilus harrisii]
Length = 212
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 100/162 (61%), Gaps = 8/162 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGSFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWDTA 75
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D+T + SF S+ W ++ G+ + LL+ +
Sbjct: 76 GQERFRTITQSYYRSANGAILAYDITKKNSFLSMPHWIEEVRKYA----GSSIVQLLIGN 131
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL D R+V+++E + + +Y + IE S+K+ +E++
Sbjct: 132 KSDLSDLREVQLSEAQLLADRYEILCAIETSAKDSSNVEEAF 173
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGSFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWD 73
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K++++GD++VGKT VQ F F + +T+GVDF+ K L
Sbjct: 18 LFKLVLVGDASVGKTCVVQRFKTGSFSERQGSTIGVDFTMKTL 60
>gi|426384624|ref|XP_004058859.1| PREDICTED: ras-related protein Rab-3C [Gorilla gorilla gorilla]
Length = 219
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 113/194 (58%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 135
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D +V E + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 136 KCDMEDERVISTERGQHLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 191
Query: 420 ERKSSIRLSEETLR 433
E +I +++ R
Sbjct: 192 ETDPAITAAKQNTR 205
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 77
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 64
>gi|268552453|ref|XP_002634209.1| C. briggsae CBR-RAB-19 protein [Caenorhabditis briggsae]
Length = 209
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 107/185 (57%), Gaps = 10/185 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD VGKT VQ F F+D T+GVDF+ K L+ G+ VKLQIWD
Sbjct: 11 FKIVLVGDMGVGKTCVVQRFRSGNFVDRQGTTIGVDFTMKTLNVD---GKRVKLQIWDTG 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G ++ +D+T ++SF S+ +W D+ SK N A LL+ +
Sbjct: 68 GQERFRTITQSYYRSANGIVLCYDITCKQSFGSLQRWIDDV-SKFAAPNVAK---LLIGT 123
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL D R +E E E + +E S+K + ++++ FL I ++ ++ V
Sbjct: 124 KCDLEDQRAIETEEAELLQRANGMFEMLETSAKNDINVDNA--FLELATILKRQYDQGVV 181
Query: 420 ERKSS 424
E+ +S
Sbjct: 182 EQGAS 186
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD VGKT VQ F F+D T+GVDF+ K L+ G+ VKLQIWD
Sbjct: 11 FKIVLVGDMGVGKTCVVQRFRSGNFVDRQGTTIGVDFTMKTLNVD---GKRVKLQIWD 65
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ KI+++GD VGKT VQ F F+D T+GVDF+ K L+
Sbjct: 10 LFKIVLVGDMGVGKTCVVQRFRSGNFVDRQGTTIGVDFTMKTLN 53
>gi|114052949|ref|NP_001040071.1| ras-related protein Rab-3C [Bos taurus]
gi|149732720|ref|XP_001495120.1| PREDICTED: ras-related protein Rab-3C-like [Equus caballus]
gi|426246459|ref|XP_004017011.1| PREDICTED: ras-related protein Rab-3C [Ovis aries]
gi|108935883|sp|P10949.3|RAB3C_BOVIN RecName: Full=Ras-related protein Rab-3C; AltName: Full=SMG P25C
gi|86438380|gb|AAI12796.1| RAB3C, member RAS oncogene family [Bos taurus]
gi|296475826|tpg|DAA17941.1| TPA: RAB3C, member RAS oncogene family [Bos taurus]
Length = 227
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 113/194 (58%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 87
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 88 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 143
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D +V E + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 144 KCDMEDERVISTERGQHLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 199
Query: 420 ERKSSIRLSEETLR 433
E +I +++ R
Sbjct: 200 ETDPAITAAKQNTR 213
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 85
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 72
>gi|395818775|ref|XP_003782792.1| PREDICTED: ras-related protein Rab-3C [Otolemur garnettii]
Length = 227
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 113/194 (58%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 87
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 88 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 143
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D +V E + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 144 KCDMEDERVISTERGQHLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 199
Query: 420 ERKSSIRLSEETLR 433
E +I +++ R
Sbjct: 200 ETDPAITAAKQNTR 213
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 85
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 72
>gi|357631253|gb|EHJ78843.1| small GTP-binding protein Rab10 [Danaus plexippus]
Length = 206
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 103/170 (60%), Gaps = 9/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F N F + +T+G+DF K + + G+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELR---GKKIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN K+F+ +V+W ++D D + ++L +
Sbjct: 67 GQERFHTITTSYYRGAMGIMLVYDITNEKTFDDIVKWLRNIDEHANED----VEKMILGN 122
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCD+ D++V E EA+ ++ + ++E S+K + IE + + L + I+
Sbjct: 123 KCDMEDKRVVSKERGEAIAREHG-IRFMETSAKSNTNIERAFSELAEAIL 171
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F N F + +T+G+DF K + + G+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELR---GKKIKLQIWD 64
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS VGKT + F N F + +T+G+DF K
Sbjct: 9 LFKLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIK 49
>gi|123504513|ref|XP_001328770.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|62736250|gb|AAX97454.1| small Rab GTPase Rab7b [Trichomonas vaginalis]
gi|121911717|gb|EAY16547.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 202
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 95/163 (58%), Gaps = 5/163 (3%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
T+ +++ GD+ VGKT+ + FV +F+ ++K T+G DFS+K+++ G+ + +QIWD
Sbjct: 9 TFKVVVLGDTGVGKTTLIHQFVNGEFIADFKATIGADFSSKIMT---VDGQRIYIQIWDT 65
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ + +Y+ +D CI+++D T +SF + W+ DL +K ++ P ++ +
Sbjct: 66 AGQERFHAVGATFYRGTDACILVYDCTQVESFHRLSFWREDLFTKSQMEPDPKFPIIIFS 125
Query: 360 SKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
+K DL +QV I + Q N EVS+K ++D
Sbjct: 126 NKSDLESQKQVNIEDARQWAEQ-NGYPLFEVSAKSGANVQDGF 167
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 43/62 (69%), Gaps = 3/62 (4%)
Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
+T ++ +++ GD+ VGKT+ + FV +F+ ++K T+G DFS+K+++ G+ + +QI
Sbjct: 6 KTKTFKVVVLGDTGVGKTTLIHQFVNGEFIADFKATIGADFSSKIMT---VDGQRIYIQI 62
Query: 227 WD 228
WD
Sbjct: 63 WD 64
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Query: 104 DAET-VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
DA+T K++V+GD+ VGKT+ + FV +F+ ++K T+G DFS+K+++
Sbjct: 4 DAKTKTFKVVVLGDTGVGKTTLIHQFVNGEFIADFKATIGADFSSKIMT 52
>gi|19923985|ref|NP_612462.1| ras-related protein Rab-3C [Homo sapiens]
gi|388452650|ref|NP_001252924.1| ras-related protein Rab-3C [Macaca mulatta]
gi|297675313|ref|XP_002815628.1| PREDICTED: ras-related protein Rab-3C isoform 2 [Pongo abelii]
gi|332233625|ref|XP_003266004.1| PREDICTED: ras-related protein Rab-3C [Nomascus leucogenys]
gi|332821437|ref|XP_526915.3| PREDICTED: ras-related protein Rab-3C isoform 2 [Pan troglodytes]
gi|402871610|ref|XP_003899749.1| PREDICTED: ras-related protein Rab-3C [Papio anubis]
gi|23396832|sp|Q96E17.1|RAB3C_HUMAN RecName: Full=Ras-related protein Rab-3C
gi|15278255|gb|AAH13033.1| RAB3C, member RAS oncogene family [Homo sapiens]
gi|19067861|gb|AAK08968.1| Rab3c [Homo sapiens]
gi|119575373|gb|EAW54978.1| RAB3C, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|355691328|gb|EHH26513.1| Ras-related protein Rab-3C [Macaca mulatta]
gi|355749935|gb|EHH54273.1| Ras-related protein Rab-3C [Macaca fascicularis]
gi|380809404|gb|AFE76577.1| ras-related protein Rab-3C [Macaca mulatta]
Length = 227
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 113/194 (58%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 87
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 88 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 143
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D +V E + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 144 KCDMEDERVISTERGQHLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 199
Query: 420 ERKSSIRLSEETLR 433
E +I +++ R
Sbjct: 200 ETDPAITAAKQNTR 213
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 85
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 72
>gi|328785884|ref|XP_392879.2| PREDICTED: LOW QUALITY PROTEIN: hypothetical protein LOC409364
isoform 1 [Apis mellifera]
Length = 760
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 97/163 (59%), Gaps = 9/163 (5%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
TY +L+ GDS VGKT V + ++ D Y +T+G+DF K+++ G P+KLQIWD
Sbjct: 8 TYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIIN---LDGTPIKLQIWDT 64
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ ++ YY+ + G ++M+D+T+ +SF + W ++ D + ++ A
Sbjct: 65 AGQERFRALTTAYYRGAMGILLMYDVTSLESFNHLSYWLRNIQENASPD----VVKVVAA 120
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
+KCD+ +R V+ + + ++ M + EVS KE++ IE++
Sbjct: 121 NKCDVTTNRAVDAERGQKIAESFD-MPFFEVSCKENINIEEAF 162
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+Y +L+ GDS VGKT V + ++ D Y +T+G+DF K+++ G P+KLQIWD
Sbjct: 8 TYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIIN---LDGTPIKLQIWD 63
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
D K+LV+GDS VGKT V + ++ D Y +T+G+DF K+++
Sbjct: 4 DFAATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIIN 51
>gi|440793724|gb|ELR14900.1| Rab7/RabGfamily small GTPase [Acanthamoeba castellanii str. Neff]
Length = 205
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 108/197 (54%), Gaps = 7/197 (3%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GDS VGKTS + +V K+ YK T+G DF TK + + G+ V LQIWD AGQ
Sbjct: 10 VILLGDSGVGKTSLMDRYVNKKYSAQYKATIGADFLTKEV---EVDGKLVTLQIWDTAGQ 66
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D CI++FD+T KSFES+ W+++ + + P ++L +K
Sbjct: 67 ERFQSLGNSFYRGADCCILVFDVTVAKSFESLDNWRNEFLVQAAVGGPEHFPFVVLGNKV 126
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
D D R V A C ++ + + E S+K+ ++ + F+ ++ S+ EE ++
Sbjct: 127 DQEDKRTVSARSGNAWCREHGDVPFYETSAKDATNVDQAF-FMAAKLAISRIPEEPPIDI 185
Query: 422 KSSIRLSEETLRDDQPK 438
RL+ + QPK
Sbjct: 186 PDVKRLNASY--EPQPK 200
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ GDS VGKTS + +V K+ YK T+G DF TK + + G+ V LQIWD
Sbjct: 10 VILLGDSGVGKTSLMDRYVNKKYSAQYKATIGADFLTKEV---EVDGKLVTLQIWD 62
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+LK++++GDS VGKTS + +V K+ YK T+G DF TK
Sbjct: 6 ALLKVILLGDSGVGKTSLMDRYVNKKYSAQYKATIGADFLTK 47
>gi|156393822|ref|XP_001636526.1| predicted protein [Nematostella vectensis]
gi|156223630|gb|EDO44463.1| predicted protein [Nematostella vectensis]
Length = 165
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 98/162 (60%), Gaps = 15/162 (9%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD+ VGKT V+ F + F N T+GVDF+ K + G VKLQIWD A
Sbjct: 8 FKIILVGDANVGKTCLVRQFTKGYFPPNQGPTIGVDFTIKTVD---VDGEKVKLQIWDTA 64
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLD---SKCILDNGAMLPCLL 357
GQ+R+ +++ YY N+DG I+ +D+TN+KSFES+ QW D + SK +L +
Sbjct: 65 GQERFRSITQSYYHNADGVIVTYDITNKKSFESLPQWLDDTNRYTSKDVL-------IAI 117
Query: 358 LASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398
+ +K DL +R+V+ + EA+ + N ++ +E S+KE +E
Sbjct: 118 VGNKSDLSTNRKVDFHHAEALAEKENTVA-LETSAKEADNVE 158
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 170 SYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 227
SYL I++ GD+ VGKT V+ F + F N T+GVDF+ K + G VKLQIW
Sbjct: 5 SYLFKIILVGDANVGKTCLVRQFTKGYFPPNQGPTIGVDFTIKTVD---VDGEKVKLQIW 61
Query: 228 D 228
D
Sbjct: 62 D 62
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
D + KI+++GD+ VGKT V+ F + F N T+GVDF+ K
Sbjct: 3 DYSYLFKIILVGDANVGKTCLVRQFTKGYFPPNQGPTIGVDFTIK 47
>gi|345793828|ref|XP_851045.2| PREDICTED: ras-related protein Rab-3C [Canis lupus familiaris]
Length = 219
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 112/194 (57%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 135
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D R + + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 136 KCDMEDERVISTERGQHLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 191
Query: 420 ERKSSIRLSEETLR 433
E +I +++ R
Sbjct: 192 ETDPAITAAKQNTR 205
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 77
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 64
>gi|194910038|ref|XP_001982062.1| GG11243 [Drosophila erecta]
gi|195504976|ref|XP_002099310.1| GE23436 [Drosophila yakuba]
gi|190656700|gb|EDV53932.1| GG11243 [Drosophila erecta]
gi|194185411|gb|EDW99022.1| GE23436 [Drosophila yakuba]
Length = 207
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS+VGKTS + +V +F + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVV---VNDRVVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T SF+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTAPNSFKNLDSWRDEFLIQASPRDPEHFPFVVLGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
DL +RQV + C N + + E S+KE + +E M F ++I +E EA
Sbjct: 128 DLDNRQVSTRRAQQWCQSKNDIPYYETSAKEGINVE--MAF---QVIAKNALELEA 178
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS+VGKTS + +V +F + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVV---VNDRVVTMQIWD 63
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 33/43 (76%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+++LK++++GDS+VGKTS + +V +F + YK T+G DF TK
Sbjct: 6 KSLLKVIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTK 48
>gi|405966153|gb|EKC31469.1| Ras-related protein Rab-43 [Crassostrea gigas]
Length = 192
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 98/160 (61%), Gaps = 8/160 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD+ VGKT VQ F +++ + +T+GVDF+ K L + G+ +KLQIWD A
Sbjct: 17 FKIVLIGDAGVGKTCVVQRFKSGTYVEKHGSTIGVDFTMKTL---QIDGKLIKLQIWDTA 73
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G II +D+T + SFESV +W D+ G + ++ +
Sbjct: 74 GQERFRTITQSYYRSANGVIIAYDITKKGSFESVPRWIEDVKRYA----GPNIVQCIIGN 129
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
K D+ R+V ++E +A + + IE S+KE+ IE+
Sbjct: 130 KKDMEHLREVNLSEAKAFAQHHGMVDAIETSAKENTNIEE 169
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 159 PYGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 216
PY T YL I++ GD+ VGKT VQ F +++ + +T+GVDF+ K L +
Sbjct: 3 PYPGTDSDDTFDYLFKIVLIGDAGVGKTCVVQRFKSGTYVEKHGSTIGVDFTMKTL---Q 59
Query: 217 YGGRPVKLQIWD 228
G+ +KLQIWD
Sbjct: 60 IDGKLIKLQIWD 71
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGD+ VGKT VQ F +++ + +T+GVDF+ K L
Sbjct: 16 LFKIVLIGDAGVGKTCVVQRFKSGTYVEKHGSTIGVDFTMKTL 58
>gi|403267520|ref|XP_003925875.1| PREDICTED: ras-related protein Rab-3C [Saimiri boliviensis
boliviensis]
Length = 227
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 112/194 (57%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 87
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 88 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 143
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D +V E + + Q F + E S+K+++ ++ + LVD IIC K E +
Sbjct: 144 KCDMEDERVISTERGQHLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SEGL 199
Query: 420 ERKSSIRLSEETLR 433
E +I +++ R
Sbjct: 200 ETDPAISAAKQNTR 213
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 85
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 72
>gi|296475820|tpg|DAA17935.1| TPA: ras-related protein Rab-3C [Bos taurus]
Length = 219
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 113/194 (58%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 135
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D +V E + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 136 KCDMEDERVISTERGQHLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 191
Query: 420 ERKSSIRLSEETLR 433
E +I +++ R
Sbjct: 192 ETDPAITAAKQNTR 205
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 77
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 64
>gi|194762816|ref|XP_001963530.1| GF20241 [Drosophila ananassae]
gi|190629189|gb|EDV44606.1| GF20241 [Drosophila ananassae]
Length = 204
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 108/184 (58%), Gaps = 11/184 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELQ---GKKIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSFE++V+W ++D D + ++L +
Sbjct: 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANED----VEKMILGN 122
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII--CSKRMEEE 417
KCD+ D++V E EA+ ++ + ++E S+K + IE++ L I+ S R E
Sbjct: 123 KCDMTDKRVVNKERGEAIAREHG-IRFMETSAKSNTNIEEAFCELAQAILDKTSGRESAE 181
Query: 418 AVER 421
ER
Sbjct: 182 NQER 185
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELQ---GKKIKLQIWD 64
Score = 38.5 bits (88), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS VGKT + F + F + +T+G+DF K
Sbjct: 9 LFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIK 49
>gi|344272308|ref|XP_003407975.1| PREDICTED: ras-related protein Rab-3C-like [Loxodonta africana]
Length = 219
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 113/194 (58%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 135
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D +V E + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 136 KCDMEDERVISTERGQHLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 191
Query: 420 ERKSSIRLSEETLR 433
E +I +++ R
Sbjct: 192 ETDPTITAAKQNTR 205
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 77
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 64
>gi|225706886|gb|ACO09289.1| Ras-related protein Rab-7 [Osmerus mordax]
Length = 205
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 105/195 (53%), Gaps = 9/195 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV---MVDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL +RQV +A C + + + E S+KE + ++ + + R + E E +
Sbjct: 128 DLENRQVTTKRAQAWCQSKSNIPYFETSAKEAINVDQAFQ-TIARNALKQESEVETYDFP 186
Query: 423 SSIRLSEETLRDDQP 437
I+ LRDD+P
Sbjct: 187 DQIK-----LRDDRP 196
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV---MVDDRLVTMQIWD 63
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|405964668|gb|EKC30125.1| Ras-related protein Rab-8A [Crassostrea gigas]
Length = 207
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 103/175 (58%), Gaps = 14/175 (8%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F ++ F + +T+G+DF + + + G+ +KLQIWD A
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI---ELDGKKIKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSFE++ W +++ D + ++L +
Sbjct: 66 GQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWIRNIEEHASQD----VDKMILGN 121
Query: 361 KCDLPDRQV---EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCD+ D++V E E A+ H FM E S+K + +ED+ F + R I +K
Sbjct: 122 KCDMNDKRVVSKEKGEALAIEHGIKFM---ETSAKASINVEDAF-FTLARDIKAK 172
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 167 QTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
+T YL +L+ GDS VGKT + F ++ F + +T+G+DF + + + G+ +KL
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI---ELDGKKIKL 59
Query: 225 QIWD 228
QIWD
Sbjct: 60 QIWD 63
>gi|57524756|ref|NP_001005591.1| uncharacterized protein LOC449549 [Danio rerio]
gi|51895902|gb|AAH82296.1| Zgc:100918 [Danio rerio]
Length = 205
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 105/195 (53%), Gaps = 9/195 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV---MVDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL +RQV +A C + + + E S+KE + ++ + + R + E E +
Sbjct: 128 DLENRQVTTKRAQAWCQSKSNIPYFETSAKEAINVDQAFQ-TIARNALKQESEVETYDFP 186
Query: 423 SSIRLSEETLRDDQP 437
I+ LRDD+P
Sbjct: 187 DQIK-----LRDDRP 196
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV---MVDDRLVTMQIWD 63
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|410948619|ref|XP_003981028.1| PREDICTED: ras-related protein Rab-3C [Felis catus]
Length = 227
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 113/194 (58%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 87
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 88 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 143
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D +V E + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 144 KCDMEDERVISTERGQHLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 199
Query: 420 ERKSSIRLSEETLR 433
E +I +++ R
Sbjct: 200 ETDPAITAAKQNTR 213
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 85
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 72
>gi|30425356|ref|NP_780771.1| ras-related protein Rab-39A [Mus musculus]
gi|46577035|sp|Q8BHD0.1|RB39A_MOUSE RecName: Full=Ras-related protein Rab-39A; Short=Rab-39
gi|26339718|dbj|BAC33522.1| unnamed protein product [Mus musculus]
gi|26343485|dbj|BAC35399.1| unnamed protein product [Mus musculus]
gi|29436752|gb|AAH49787.1| RAB39, member RAS oncogene family [Mus musculus]
gi|112293039|dbj|BAF02897.1| Rab39A [Mus musculus]
gi|148693854|gb|EDL25801.1| RAB39, member RAS oncogene family [Mus musculus]
Length = 217
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 101/181 (55%), Gaps = 11/181 (6%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKN----TVGVDFSTKLLSHKKYG 288
+ I I + +++ GDSTVGK+ + F Q +F + TVGVDF ++LL +
Sbjct: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLHSPACDPTVGVDFFSRLLEIEP-- 58
Query: 289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD 348
G+ +KLQ+WD AGQ+R+ ++R YY+NS G ++FD+TNR+SFE V W L+ +
Sbjct: 59 GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDW---LEEAKMHV 115
Query: 349 NGAMLPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
+ LL+ KCDL RQV E E + M +IE S+K+ +E+S L
Sbjct: 116 QPFQIVFLLVGHKCDLASQRQVSREEAERLSTDCG-MKYIETSAKDATNVEESFTILTRD 174
Query: 408 I 408
I
Sbjct: 175 I 175
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYK----NTVGVDFSTKLLSHKKYGGRPVKLQI 226
+ +++ GDSTVGK+ + F Q +F + TVGVDF ++LL + G+ +KLQ+
Sbjct: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGLHSPACDPTVGVDFFSRLLEIEP--GKRIKLQL 66
Query: 227 WD 228
WD
Sbjct: 67 WD 68
>gi|31210411|ref|XP_314172.1| AGAP005255-PA [Anopheles gambiae str. PEST]
gi|30176728|gb|EAA09493.2| AGAP005255-PA [Anopheles gambiae str. PEST]
Length = 221
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 102/177 (57%), Gaps = 12/177 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWDT 77
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++ YY+ + G I+M+D+TN +SF SV W + + DN + +L+
Sbjct: 78 AGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWVTQIKTYS-WDNAQV---ILVG 133
Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
+KCD+ D R + + + Q + + E S+KE++ + D LVD IIC K E
Sbjct: 134 NKCDMEDERVISFERGKQLADQLG-VEFFETSAKENVHVTDVFERLVD-IICDKMSE 188
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWD 76
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKK 154
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K + H K
Sbjct: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK 68
>gi|125772885|ref|XP_001357701.1| GA16022 [Drosophila pseudoobscura pseudoobscura]
gi|195158653|ref|XP_002020200.1| GL13857 [Drosophila persimilis]
gi|54637433|gb|EAL26835.1| GA16022 [Drosophila pseudoobscura pseudoobscura]
gi|194116969|gb|EDW39012.1| GL13857 [Drosophila persimilis]
Length = 213
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 99/173 (57%), Gaps = 10/173 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ TY IL+ GDS VGKT V + K+ D Y +T+G+DF KL++ G P+KLQIW
Sbjct: 6 VATYKILVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLIN---LDGVPIKLQIW 62
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+R+ ++ YY+ + G ++M+D+TN +S+ ++ W ++ D + +L
Sbjct: 63 DTAGQERFRTLTTAYYRGAMGILLMYDVTNLESYNNLSYWLRNIQENASPD----VVKVL 118
Query: 358 LASKCDLP--DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+KC+ R V+ + E + ++ M + EVS K ++ IED+ L +I
Sbjct: 119 AGNKCECSTTQRMVDKDRGEKIAENFD-MPFFEVSCKSNINIEDAFLSLARKI 170
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+Y IL+ GDS VGKT V + K+ D Y +T+G+DF KL++ G P+KLQIWD
Sbjct: 7 ATYKILVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLIN---LDGVPIKLQIWD 63
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
D KILV+GDS VGKT V + K+ D Y +T+G+DF KL++
Sbjct: 4 DFVATYKILVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLIN 51
>gi|157116294|ref|XP_001652810.1| rab 19, 41 and [Aedes aegypti]
gi|108876535|gb|EAT40760.1| AAEL007525-PA [Aedes aegypti]
Length = 219
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 100/164 (60%), Gaps = 11/164 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD GKT VQ F F++++ NT+GVDFS K ++ G+ VKLQIWD A
Sbjct: 22 FKIVLIGDCGTGKTCIVQRFKSGNFIESHGNTIGVDFSMKAVT---VDGKKVKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G II++D+T R SF ++ +W ++ + + ++ +
Sbjct: 79 GQERFRTITQSYYRSANGVIIVYDITKRSSFLNLQRWIDEVRRY----TASNVMIFVIGN 134
Query: 361 KCDLPD-RQVEINEIEAVCHQY--NFMSWIEVSSKEHLMIEDSM 401
KCDL R+VE E + +C QY M +E S+K++ IED+
Sbjct: 135 KCDLDAIREVEFAEAQTMC-QYIPEIMFVMETSAKDNRNIEDAF 177
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD GKT VQ F F++++ NT+GVDFS K ++ G+ VKLQIWD
Sbjct: 22 FKIVLIGDCGTGKTCIVQRFKSGNFIESHGNTIGVDFSMKAVT---VDGKKVKLQIWD 76
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ KI++IGD GKT VQ F F++++ NT+GVDFS K ++
Sbjct: 21 LFKIVLIGDCGTGKTCIVQRFKSGNFIESHGNTIGVDFSMKAVT 64
>gi|168062057|ref|XP_001783000.1| Rab11/RabA-family small GTPase [Physcomitrella patens subsp.
patens]
gi|162665517|gb|EDQ52199.1| Rab11/RabA-family small GTPase [Physcomitrella patens subsp.
patens]
Length = 215
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 106/176 (60%), Gaps = 11/176 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GDS VGK++ + + +N+F N K T+GV+F T+ + + G+ VK QIWD A
Sbjct: 13 FKVVLIGDSAVGKSNLLSRYARNEFNSNSKATIGVEFQTQSM---EIDGKEVKAQIWDTA 69
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G +I+FD+T R +FE+V +W +L + + + + +L+ +
Sbjct: 70 GQERFRAVTSAYYRGAVGALIVFDITRRGTFENVSRWLDELK----VHSDSSVVVMLVGN 125
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI--ICSKR 413
K DL R+V + E A+ N MS++E S+ E + + ++ ++ I I SK+
Sbjct: 126 KSDLAHIREVTVEEATALAEN-NAMSFMETSALESVNVAEAFQTVLKEIHKIVSKK 180
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 167 QTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
Q+ YL +++ GDS VGK++ + + +N+F N K T+GV+F T+ + + G+ VK
Sbjct: 7 QSEDYLFKVVLIGDSAVGKSNLLSRYARNEFNSNSKATIGVEFQTQSM---EIDGKEVKA 63
Query: 225 QIWD 228
QIWD
Sbjct: 64 QIWD 67
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 31/43 (72%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+++IGDS VGK++ + + +N+F N K T+GV+F T+ +
Sbjct: 12 LFKVVLIGDSAVGKSNLLSRYARNEFNSNSKATIGVEFQTQSM 54
>gi|432911772|ref|XP_004078715.1| PREDICTED: ras-related protein Rab-3A-like [Oryzias latipes]
Length = 218
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 103/176 (58%), Gaps = 9/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 22 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN SF +V W + + DN + L++ +
Sbjct: 79 GQERYRTITTAYYRGAMGFILMYDITNEDSFNAVQDWSTQIKTYS-WDNAQV---LVVGN 134
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
KCD+ D +V +E + + + E S+K+++ ++ + LVD IIC +RM E
Sbjct: 135 KCDVEDERVVASERGRLLSEQLGFEFFEASAKDNINVKQTFERLVD-IIC-ERMAE 188
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 12 ESTDQNFDFMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 63
>gi|426228772|ref|XP_004008470.1| PREDICTED: ras-related protein Rab-3A [Ovis aries]
Length = 220
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 101/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E + + E S+K+++ ++ + LVD +IC K E
Sbjct: 136 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEKMSE 189
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
Query: 154 KYGGRPYGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 211
+YG + S Q Y+ ILI G+S+VGKTS++ + + F + +TVG+DF K
Sbjct: 8 RYGQKE----SSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKT 63
Query: 212 LSHKKYGGRPVKLQIWD 228
+ + +KLQIWD
Sbjct: 64 IYRND---KRIKLQIWD 77
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 13 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 64
>gi|432116086|gb|ELK37213.1| Ras-related protein Rab-7b [Myotis davidii]
Length = 199
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 102/188 (54%), Gaps = 7/188 (3%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I G VGKTS + +V F ++Y+ T+G +K++ +KLQIWD GQ
Sbjct: 11 LIIVGALGVGKTSLLHQYVHKTFFEDYQTTLGASILSKIII---LNDTTLKLQIWDTGGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ M +Y+ SDGCI+ FD+T+ +SFE++ W+ D+ +K I+ P + L +K
Sbjct: 68 ERFRSMVSTFYKGSDGCILAFDVTDLESFEALNTWRGDVLAK-IIPTEQSYPMVALGNKI 126
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL DRQV + C + N + + EVS+K + + + L R + R E +
Sbjct: 127 DLEDRQVPPEVAQNWCKEKN-IPYFEVSAKNDINVVQAFEMLASRALSRYRNTENYL--T 183
Query: 423 SSIRLSEE 430
SI+LS E
Sbjct: 184 DSIKLSPE 191
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I G VGKTS + +V F ++Y+ T+G +K++ +KLQIWD
Sbjct: 11 LIIVGALGVGKTSLLHQYVHKTFFEDYQTTLGASILSKIII---LNDTTLKLQIWD 63
>gi|50759922|ref|XP_425771.1| PREDICTED: ras-related protein Rab-39B-like [Gallus gallus]
Length = 211
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 95/169 (56%), Gaps = 7/169 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GDSTVGK+S ++ + + FLD TVGVDF + + + G VKLQ WD A
Sbjct: 9 FRVIMLGDSTVGKSSLLRRYTEGVFLDAVNQTVGVDFYVQFVELEP--GLQVKLQFWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++R YY+NS G +++FDLTNR SFESV +W ++ + LL+
Sbjct: 67 GQERFRAVTRSYYRNSAGAMLLFDLTNRASFESVRRWHREVTDTV---QPFHVVFLLVGH 123
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
K DL +R+V E E + ++E S+K+ +E + L I
Sbjct: 124 KSDLAAERKVGRREAERLAASLG-ARYVETSAKDGSDVERAFRMLTAAI 171
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDSTVGK+S ++ + + FLD TVGVDF + + + G VKLQ WD
Sbjct: 9 FRVIMLGDSTVGKSSLLRRYTEGVFLDAVNQTVGVDFYVQFVELEP--GLQVKLQFWD 64
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+++++GDSTVGK+S ++ + + FLD TVGVDF + +
Sbjct: 9 FRVIMLGDSTVGKSSLLRRYTEGVFLDAVNQTVGVDFYVQFV 50
>gi|209876790|ref|XP_002139837.1| hypothetical protein [Cryptosporidium muris RN66]
gi|209555443|gb|EEA05488.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
Length = 216
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 102/173 (58%), Gaps = 10/173 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +I GD+ GK+ + F++NKF +T+GV+F +K+++ GG+ VKLQIWD A
Sbjct: 13 FKFIIIGDAGAGKSCLLHQFIENKFKKGSSHTIGVEFGSKIITT---GGKRVKLQIWDTA 69
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++R YY+ + G +I++D+TNR+++ +V W D + +D + + + +
Sbjct: 70 GQERYRSVTRSYYRGAAGALIVYDITNRETYNHLVNWLADARTLARVD----ISIIGVGN 125
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
K DL D RQV E + C Q N + ++E S+ +E+ V R+I SK
Sbjct: 126 KVDLKDKRQVTFLE-ASRCAQENDILFLETSALTGEGVEEVF-VKVTRLILSK 176
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ K ++IGD+ GK+ + F++NKF +T+GV+F +K+++
Sbjct: 12 LFKFIIIGDAGAGKSCLLHQFIENKFKKGSSHTIGVEFGSKIIT 55
>gi|126654505|ref|XP_001388423.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117363|gb|EAZ51463.1| hypothetical protein cgd8_1040 [Cryptosporidium parvum Iowa II]
Length = 216
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 102/173 (58%), Gaps = 10/173 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ++ GD+ GK+ + F++NKF +T+GV+F +K+++ GG+ +KLQIWD A
Sbjct: 13 FKFIVIGDAGAGKSCLLHQFIENKFKKGSSHTIGVEFGSKIITA---GGKRIKLQIWDTA 69
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++R YY+ + G +I++D+TNR+S+ +V W D + +D + + + +
Sbjct: 70 GQERYRSVTRSYYRGAAGALIVYDITNRESYNHLVNWLADARTLARVD----ISIIGVGN 125
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
K DL D RQV E + C Q N + ++E S+ +E+ V R+I SK
Sbjct: 126 KLDLKDKRQVTFLE-ASRCAQENDILFLETSALTGEGVEEVF-VKVTRLILSK 176
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ K +VIGD+ GK+ + F++NKF +T+GV+F +K+++
Sbjct: 12 LFKFIVIGDAGAGKSCLLHQFIENKFKKGSSHTIGVEFGSKIIT 55
>gi|432854572|ref|XP_004067967.1| PREDICTED: ras-related protein Rab-3A-like [Oryzias latipes]
Length = 219
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 22 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN SF +V W + + DN + LL+ +
Sbjct: 79 GQERYRTITTAYYRGAMGFILMYDITNEDSFNAVQDWSTQIKTYS-WDNAQV---LLVGN 134
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V + ++ + E S+K+++ ++ + LVD IIC K E
Sbjct: 135 KCDMEDERVVSADRGRQLSEHLGFEFFEASAKDNINVKQTFERLVD-IICEKMSE 188
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 12 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 63
>gi|268572557|ref|XP_002641352.1| C. briggsae CBR-RAB-35 protein [Caenorhabditis briggsae]
Length = 209
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 109/203 (53%), Gaps = 12/203 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +NY T+GVDF + + G+ VKLQIWD A
Sbjct: 11 FKLLIIGDSGVGKSSLLLRFADNTFSENYITTIGVDFKIRTMD---INGQRVKLQIWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN +SF +V +W ++++ C + +L+ +
Sbjct: 68 GQERFRTITSTYYRGTHGVVVVYDVTNGESFGNVKRWLQEIENNC-----DSVQKVLVGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV- 419
KC+ DR+V + Q +++ E S+KE +E + ++ +K +
Sbjct: 123 KCEETDRRVVLESDARNYAQSMNIAFFETSAKEDKNVEPMFTCITSLVLTAKLANPSSAS 182
Query: 420 ---ERKSSIRLSEETLRDDQPKK 439
R + L + + ++Q KK
Sbjct: 183 KDQHRSGGVSLKDTSGSNNQKKK 205
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F +NY T+GVDF + + G+ VKLQIWD
Sbjct: 11 FKLLIIGDSGVGKSSLLLRFADNTFSENYITTIGVDFKIRTMD---INGQRVKLQIWD 65
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
D + + K+L+IGDS VGK+S + F N F +NY T+GVDF + +
Sbjct: 6 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSENYITTIGVDFKIRTM 52
>gi|307197094|gb|EFN78462.1| Ras-related protein Rab-8A [Harpegnathos saltator]
Length = 760
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 95/163 (58%), Gaps = 9/163 (5%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
TY +L+ GDS VGKT V + ++ D Y +T+G+DF K+++ G P+KLQIWD
Sbjct: 8 TYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIIN---LDGTPIKLQIWDT 64
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ ++ YY+ + G ++M+D+T+ +SF + W ++ D + +L A
Sbjct: 65 AGQERFRTLTTAYYRGAMGILLMYDVTSLESFNHLSYWLRNIQENASPD----VVKVLAA 120
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
+KCD R V+ + + ++ M + EVS KE++ IE++
Sbjct: 121 NKCDATAHRAVDAERGQKIAENFD-MPFFEVSCKENINIEEAF 162
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+Y +L+ GDS VGKT V + ++ D Y +T+G+DF K+++ G P+KLQIWD
Sbjct: 8 TYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIIN---LDGTPIKLQIWD 63
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
D K+LV+GDS VGKT V + ++ D Y +T+G+DF K+++
Sbjct: 4 DFAATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIIN 51
>gi|291395402|ref|XP_002714096.1| PREDICTED: RAB3C, member RAS oncogene family-like [Oryctolagus
cuniculus]
Length = 219
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 113/194 (58%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 135
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D +V E + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 136 KCDMEDERVISTERGQRLGEQLGF-EFFEASAKDNINVKQTFERLVD-IICDKM--SESL 191
Query: 420 ERKSSIRLSEETLR 433
E ++ +++ R
Sbjct: 192 ETDPAVTAAKQNTR 205
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 77
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 64
>gi|256083426|ref|XP_002577945.1| rab9 and [Schistosoma mansoni]
gi|353229652|emb|CCD75823.1| putative rab9 and [Schistosoma mansoni]
Length = 205
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 98/184 (53%), Gaps = 3/184 (1%)
Query: 247 GDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI 306
GDS VGKTS + ++ KF + YK T+G DF TK + + R V +QIWD AGQ+R+
Sbjct: 15 GDSGVGKTSLITQYIDKKFSNQYKATIGADFFTK---QEVFDDRLVTMQIWDTAGQERFQ 71
Query: 307 CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366
+ +Y+ +D C++++D+T +F+++ W+ + + N P +++ +KCDL +
Sbjct: 72 SLGVAFYRGADCCVLVYDVTMTSTFKTLDSWRDEFLVQSSPRNPERFPFIVIGNKCDLDN 131
Query: 367 RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERKSSIR 426
R V N + C + + E S+KE+ +E + ++ I + + SIR
Sbjct: 132 RAVSENRAKQWCQANGNLPYFECSAKENTNVEKAFAHIIGVAIDEESATNLHSDYPDSIR 191
Query: 427 LSEE 430
L E
Sbjct: 192 LGTE 195
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 177 GDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
GDS VGKTS + ++ KF + YK T+G DF TK + + R V +QIWD
Sbjct: 15 GDSGVGKTSLITQYIDKKFSNQYKATIGADFFTK---QEVFDDRLVTMQIWD 63
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 115 GDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
GDS VGKTS + ++ KF + YK T+G DF TK
Sbjct: 15 GDSGVGKTSLITQYIDKKFSNQYKATIGADFFTK 48
>gi|410921832|ref|XP_003974387.1| PREDICTED: ras-related protein Rab-3A-like [Takifugu rubripes]
Length = 219
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 22 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 79 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 134
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V + + + E S+K+++ ++ + LVD IIC K E
Sbjct: 135 KCDMDDERVVSGDRGRQLADHLGFEFFEASAKDNINVKQTFERLVD-IICEKMSE 188
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 22 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 76
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 12 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 63
>gi|339250014|ref|XP_003373992.1| GTP-binding protein Rab-3D [Trichinella spiralis]
gi|316969762|gb|EFV53812.1| GTP-binding protein Rab-3D [Trichinella spiralis]
Length = 218
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + G + VKLQIWD A
Sbjct: 20 FKILIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFR---GDKRVKLQIWDTA 76
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF SV W + + DN + +L+ +
Sbjct: 77 GQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYS-WDNAQV---VLVGN 132
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V E + + E S+KE++ ++ LVD IIC K E
Sbjct: 133 KCDMEDERVVSYERGKQLADQLGLEFFEASAKENVHVKAVFERLVD-IICDKMAE 186
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + G + VKLQIWD
Sbjct: 20 FKILIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFR---GDKRVKLQIWD 74
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 19 MFKILIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTV 61
>gi|269972626|emb|CBE66893.1| CG5915-PA [Drosophila ananassae]
Length = 207
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 97/176 (55%), Gaps = 8/176 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V +F + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVV---VNDRVVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T SF+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTAPNSFKNLDSWRDEFLIQASPRDPEHFPFVVLGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
DL +RQV + C N + + E S+KE + +E L + I +E+EA
Sbjct: 128 DLDNRQVSTRRAQQWCQSKNDIPYYETSAKEGINVE-----LAFQTIAKNALEQEA 178
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V +F + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVV---VNDRVVTMQIWD 63
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S +++LK++++GDS VGKTS + +V +F + YK T+G DF TK
Sbjct: 3 SRKKSLLKVIILGDSGVGKTSLMNQYVNKRFSNQYKATIGADFCTK 48
>gi|242004508|ref|XP_002423125.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus
corporis]
gi|212506071|gb|EEB10387.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus
corporis]
Length = 210
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 99/163 (60%), Gaps = 9/163 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD GKT VQ F F++ + NT+GVDFS K + G+ VKLQIWD A
Sbjct: 11 FKIVLIGDCGAGKTCVVQRFKTGAFVERHGNTIGVDFSMK---NVVVDGKKVKLQIWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G II++D+T R SF S+ +W ++ + + +L+ +
Sbjct: 68 GQERFRTITQSYYRSANGVIIVYDITKRSSFLSLERWIEEVRRYAATN----VLLVLVGN 123
Query: 361 KCDLPD-RQVEINEIEAVCHQY-NFMSWIEVSSKEHLMIEDSM 401
K DL + R+VE +E EA+C + +E S+KE+ IED+
Sbjct: 124 KSDLENLREVEFSEAEAMCEFIPEVLCVLEASAKENTNIEDAF 166
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD GKT VQ F F++ + NT+GVDFS K + G+ VKLQIWD
Sbjct: 11 FKIVLIGDCGAGKTCVVQRFKTGAFVERHGNTIGVDFSMK---NVVVDGKKVKLQIWD 65
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ KI++IGD GKT VQ F F++ + NT+GVDFS K
Sbjct: 10 LFKIVLIGDCGAGKTCVVQRFKTGAFVERHGNTIGVDFSMK 50
>gi|126326678|ref|XP_001371437.1| PREDICTED: ras-related protein Rab-39A-like [Monodelphis domestica]
Length = 217
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 101/184 (54%), Gaps = 17/184 (9%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKN----TVGVDFSTKLLSHKKYG 288
+ I I + +++ GDSTVGK+ + F Q +F TVGVDF ++LL +
Sbjct: 1 MEAIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGMLSPACDPTVGVDFFSRLLEIEP-- 58
Query: 289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD 348
G+ +KLQ+WD AGQ+R+ ++R YY+NS G ++FD+TNR+SFE V W L+ +
Sbjct: 59 GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVQDW---LEEAKMYV 115
Query: 349 NGAMLPCLLLASKCDL-PDRQVEINEIE---AVCHQYNFMSWIEVSSKEHLMIEDSMNFL 404
+ LL+ KCDL RQV E E A C M +IE S+K+ +E+S L
Sbjct: 116 QPFRIVFLLVGHKCDLVSQRQVSREEAEKMSAACG----MKYIETSAKDATNVEESFTIL 171
Query: 405 VDRI 408
I
Sbjct: 172 TRDI 175
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYK----NTVGVDFSTKLLSHKKYGGRPVKLQI 226
+ +++ GDSTVGK+ + F Q +F TVGVDF ++LL + G+ +KLQ+
Sbjct: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGMLSPACDPTVGVDFFSRLLEIEP--GKRIKLQL 66
Query: 227 WD 228
WD
Sbjct: 67 WD 68
>gi|225711468|gb|ACO11580.1| Ras-related protein Rab-18 [Caligus rogercresseyi]
Length = 211
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 105/181 (58%), Gaps = 6/181 (3%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ + +LI G+S VGK+S + F ++ F + T+GVDF K ++ + G VKL IW
Sbjct: 7 LTSLKLLIIGESGVGKSSLLLRFTEDAFDPEHSATIGVDFKVKTITVQ---GNRVKLAIW 63
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+R+ ++ YY+ G I+++D+T+R+SF +V W ++LD+ + + +L
Sbjct: 64 DTAGQERFRTLTPSYYRGGQGAILVYDVTSRESFSNVENWLNELDTYTTNHD---IVKML 120
Query: 358 LASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
+ +KCDL D++V E C + + M +IE S+K ++ + LV+ II + + E
Sbjct: 121 VGNKCDLEDKRVVSKEEGQKCARKHRMMFIEASAKTREGVQLAFEELVENIIQTPELWEA 180
Query: 418 A 418
A
Sbjct: 181 A 181
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
S +LI G+S VGK+S + F ++ F + T+GVDF K ++ + G VKL IWD
Sbjct: 9 SLKLLIIGESGVGKSSLLLRFTEDAFDPEHSATIGVDFKVKTITVQ---GNRVKLAIWDT 65
Query: 230 -----YCTLSP 235
+ TL+P
Sbjct: 66 AGQERFRTLTP 76
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
T LK+L+IG+S VGK+S + F ++ F + T+GVDF K ++
Sbjct: 8 TSLKLLIIGESGVGKSSLLLRFTEDAFDPEHSATIGVDFKVKTIT 52
>gi|242004078|ref|XP_002422965.1| rab9 and, putative [Pediculus humanus corporis]
gi|212505881|gb|EEB10227.1| rab9 and, putative [Pediculus humanus corporis]
Length = 206
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 100/186 (53%), Gaps = 3/186 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V NKF + YK T+G DF T+ + G R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSIMNQYVNNKFSNQYKATIGADFLTRDVD---VGDRRVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD++ +++S+ W+ + + + P +++ +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVSAPTTYKSLENWRDEFLIQASPRDPDNFPFVVIGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
D+ +R V + C N + + E S+KE + IE + + + + E E
Sbjct: 128 DVENRSVSTKRAQQWCQSKNNIPYFETSAKEGINIEQAFQTIAKNALAQESEVELYNEFP 187
Query: 423 SSIRLS 428
I+LS
Sbjct: 188 DQIKLS 193
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V NKF + YK T+G DF T+ + G R V +QIWD
Sbjct: 11 VIILGDSGVGKTSIMNQYVNNKFSNQYKATIGADFLTRDVD---VGDRRVTMQIWD 63
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V NKF + YK T+G DF T+
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSIMNQYVNNKFSNQYKATIGADFLTR 48
>gi|260821258|ref|XP_002605950.1| hypothetical protein BRAFLDRAFT_253798 [Branchiostoma floridae]
gi|229291287|gb|EEN61960.1| hypothetical protein BRAFLDRAFT_253798 [Branchiostoma floridae]
Length = 218
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 106/194 (54%), Gaps = 13/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD A
Sbjct: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRQD---KRVKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN SF SV W + + DN + +L+ +
Sbjct: 79 GQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWCTQIKTYS-WDNAQV---VLVGN 134
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE---- 416
KCDL D +V E + + E S+KE++ ++ + LVD IIC K E
Sbjct: 135 KCDLEDERVISTERGKQLADQLGLEFFETSAKENINVKQTFERLVD-IICDKMSESLDSD 193
Query: 417 -EAVERKSSIRLSE 429
V + RL+E
Sbjct: 194 PSLVSKGQGTRLTE 207
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD
Sbjct: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRQD---KRVKLQIWD 76
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 63
>gi|17865835|ref|NP_524472.1| Rab7, isoform A [Drosophila melanogaster]
gi|386766374|ref|NP_001247276.1| Rab7, isoform B [Drosophila melanogaster]
gi|386766376|ref|NP_001247277.1| Rab7, isoform C [Drosophila melanogaster]
gi|8118580|gb|AAF73041.1|AF263363_1 small ras-like GTPase RAB7 [Drosophila melanogaster]
gi|3426326|gb|AAC32270.1| small ras-like GTPase [Drosophila melanogaster]
gi|6561905|dbj|BAA88245.1| Rab7 protein [Drosophila melanogaster]
gi|7301083|gb|AAF56218.1| Rab7, isoform A [Drosophila melanogaster]
gi|16648020|gb|AAL25275.1| GH03685p [Drosophila melanogaster]
gi|116806766|emb|CAL26809.1| CG5915 [Drosophila melanogaster]
gi|116806768|emb|CAL26810.1| CG5915 [Drosophila melanogaster]
gi|116806770|emb|CAL26811.1| CG5915 [Drosophila melanogaster]
gi|116806772|emb|CAL26812.1| CG5915 [Drosophila melanogaster]
gi|116806774|emb|CAL26813.1| CG5915 [Drosophila melanogaster]
gi|116806776|emb|CAL26814.1| CG5915 [Drosophila melanogaster]
gi|116806778|emb|CAL26815.1| CG5915 [Drosophila melanogaster]
gi|116806780|emb|CAL26816.1| CG5915 [Drosophila melanogaster]
gi|116806782|emb|CAL26817.1| CG5915 [Drosophila melanogaster]
gi|116806784|emb|CAL26818.1| CG5915 [Drosophila melanogaster]
gi|116806786|emb|CAL26819.1| CG5915 [Drosophila melanogaster]
gi|220944908|gb|ACL84997.1| Rab7-PA [synthetic construct]
gi|220954800|gb|ACL89943.1| Rab7-PA [synthetic construct]
gi|223967661|emb|CAR93561.1| CG5915-PA [Drosophila melanogaster]
gi|223967663|emb|CAR93562.1| CG5915-PA [Drosophila melanogaster]
gi|223967665|emb|CAR93563.1| CG5915-PA [Drosophila melanogaster]
gi|223967667|emb|CAR93564.1| CG5915-PA [Drosophila melanogaster]
gi|223967669|emb|CAR93565.1| CG5915-PA [Drosophila melanogaster]
gi|223967671|emb|CAR93566.1| CG5915-PA [Drosophila melanogaster]
gi|223967673|emb|CAR93567.1| CG5915-PA [Drosophila melanogaster]
gi|223967675|emb|CAR93568.1| CG5915-PA [Drosophila melanogaster]
gi|223967677|emb|CAR93569.1| CG5915-PA [Drosophila melanogaster]
gi|223967679|emb|CAR93570.1| CG5915-PA [Drosophila melanogaster]
gi|223967681|emb|CAR93571.1| CG5915-PA [Drosophila melanogaster]
gi|294661911|gb|ADF28796.1| MIP21169p [Drosophila melanogaster]
gi|383292915|gb|AFH06594.1| Rab7, isoform B [Drosophila melanogaster]
gi|383292916|gb|AFH06595.1| Rab7, isoform C [Drosophila melanogaster]
Length = 207
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS+VGKTS + +V +F + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVV---VNDRVVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T SF+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTAPNSFKNLDSWRDEFLIQASPRDPDHFPFVVLGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
DL +RQV + C N + + E S+KE + +E M F ++I +E EA
Sbjct: 128 DLDNRQVSTRRAQQWCQSKNDIPYYETSAKEGINVE--MAF---QVIAKNALELEA 178
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS+VGKTS + +V +F + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVV---VNDRVVTMQIWD 63
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 33/43 (76%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+++LK++++GDS+VGKTS + +V +F + YK T+G DF TK
Sbjct: 6 KSLLKVIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTK 48
>gi|157822741|ref|NP_001101618.1| ras-related protein Rab-39A [Rattus norvegicus]
gi|149041681|gb|EDL95522.1| RAB39, member RAS oncogene family (predicted) [Rattus norvegicus]
Length = 217
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 100/181 (55%), Gaps = 11/181 (6%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYG 288
+ I I + +++ GDSTVGK+ + F Q +F TVGVDF ++LL +
Sbjct: 1 MEAIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP-- 58
Query: 289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD 348
G+ +KLQ+WD AGQ+R+ ++R YY+NS G ++FD+TNR+SFE V W L+ +
Sbjct: 59 GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDW---LEEAKMHV 115
Query: 349 NGAMLPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
+ LL+ KCDL RQV E E + M +IE S+K+ +E+S L
Sbjct: 116 QPFQIVFLLVGHKCDLASQRQVSREEAEKLSKDCG-MKYIETSAKDATNVEESFTILARD 174
Query: 408 I 408
I
Sbjct: 175 I 175
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
+ +++ GDSTVGK+ + F Q +F TVGVDF ++LL + G+ +KLQ+
Sbjct: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP--GKRIKLQL 66
Query: 227 WD 228
WD
Sbjct: 67 WD 68
>gi|67464143|pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
gi|67464144|pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
gi|67464145|pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
gi|67464146|pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
gi|67464282|pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AG
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGL 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK---EVMVDDRLVTMQIWD 63
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|326501920|dbj|BAK06452.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 209
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 108/184 (58%), Gaps = 7/184 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS+VGK+ ++ F + ++D+Y +T+GVDF + L G+ +KLQIWD A
Sbjct: 9 FKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTLDMD---GKTIKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G II++D+T+ +SF +V QW +++ N ++ LL+ +
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLSEINKYA---NDSVRK-LLVGN 121
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
KCDL + +V + + ++E S+KE + +E++ + I SK + +E
Sbjct: 122 KCDLAESRVVDTAVAQAYADEIGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQGVLE 181
Query: 421 RKSS 424
RK S
Sbjct: 182 RKPS 185
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS+VGK+ ++ F + ++D+Y +T+GVDF + L G+ +KLQIWD
Sbjct: 9 FKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTLDMD---GKTIKLQIWD 63
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 32/43 (74%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS+VGK+ ++ F + ++D+Y +T+GVDF + L
Sbjct: 8 LFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTL 50
>gi|145524505|ref|XP_001448080.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415613|emb|CAK80683.1| unnamed protein product [Paramecium tetraurelia]
Length = 199
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 120/205 (58%), Gaps = 16/205 (7%)
Query: 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
T+ I++ GD VGK++ + F +KF + +K T+GV+F+ K ++ G+ +KL IWD
Sbjct: 4 ATFKIVLVGDPRVGKSNTLTRFAFDKFEEGHKITIGVEFAQKNVN---IMGKEIKLAIWD 60
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
G ++Y ++ +YY+ + G +++FD+T+R SFE++ +W D++S N + + +L+
Sbjct: 61 TCGAEQYRALTNIYYKGAAGALLIFDITDRSSFENLDKWLKDIES-----NTSSIVIMLV 115
Query: 359 ASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
A+K DL D RQV E ++ ++++E S+K+ I+ + L I E
Sbjct: 116 ANKLDLSDQRQVSKQEAAQFAFEHK-LAYLETSAKDGTGIQQAFEQLATE-ITKLSQTTE 173
Query: 418 AVERKSSIRLSEETL----RDDQPK 438
++E K++I+L+E T+ +D Q K
Sbjct: 174 SIE-KNNIKLTESTIPKGEQDKQKK 197
>gi|357504951|ref|XP_003622764.1| Ras-related protein ARA-1 [Medicago truncatula]
gi|355497779|gb|AES78982.1| Ras-related protein ARA-1 [Medicago truncatula]
Length = 215
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 104/169 (61%), Gaps = 9/169 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGK++ + F +N+F N K T+GV+F T+++ + G+ VK QIWD A
Sbjct: 14 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQMV---EIDGKEVKAQIWDTA 70
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D++ R +FES+ +W +L ++ N + + +L+ +
Sbjct: 71 GQERFRAVTSAYYRGAFGALVVYDISRRGTFESIKRWLDELTTQ----NDSTVARMLVGN 126
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
KCDL + R+V I E +A+ + ++E S+ + ++ + ++ I
Sbjct: 127 KCDLENIREVSIEEGKALAEEEGLF-FMETSALDSTNVQTAFEIVIREI 174
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGK++ + F +N+F N K T+GV+F T+++ + G+ VK QIWD
Sbjct: 14 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQMV---EIDGKEVKAQIWD 68
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 32/43 (74%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGDS VGK++ + F +N+F N K T+GV+F T+++
Sbjct: 13 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQMV 55
>gi|241997950|ref|XP_002433618.1| synaptic vesicle-associated GTP-binding protein, putative [Ixodes
scapularis]
gi|215495377|gb|EEC05018.1| synaptic vesicle-associated GTP-binding protein, putative [Ixodes
scapularis]
Length = 219
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 100/176 (56%), Gaps = 10/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 22 FKILIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWDT 77
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++ YY+ + G I+M+D+TN +SF SV W + + DN + +L+
Sbjct: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFNSVQDWVTQIKTYS-WDNAQV---ILVG 133
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
+KCD+ D +V E + + E S+KE++ ++ LVD IIC K E
Sbjct: 134 NKCDMEDERVVSTERGKQLADQLGLEFFETSAKENVNVKAVFERLVD-IICDKMSE 188
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 22 FKILIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWD 76
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKK 154
+ KIL+IG+S+VGKTS++ + + F + +TVG+DF K + H K
Sbjct: 21 MFKILIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK 68
>gi|387594435|gb|EIJ89459.1| small GTP binding protein RAB8 [Nematocida parisii ERTm3]
gi|387596723|gb|EIJ94344.1| small GTP binding protein RAB8 [Nematocida parisii ERTm1]
Length = 207
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 84/137 (61%), Gaps = 8/137 (5%)
Query: 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
+LI G+S VGKTS +Q F+++KF + T+G+DF +K ++ G+ ++LQIWD AG
Sbjct: 9 KLLIIGESNVGKTSILQRFIEDKFEKTFSTTIGIDFRSKNIN---INGKEIELQIWDTAG 65
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
Q+R+ ++R YY+ SDG + FDLT+ SF S+ +W +++ K +P LL +K
Sbjct: 66 QERFFSITRSYYRGSDGIFLTFDLTSEGSFASLSKWINEIKEKV----NENVPVFLLGNK 121
Query: 362 CD-LPDRQVEINEIEAV 377
D L ++ E EI +
Sbjct: 122 KDLLKGKEFETTEISTI 138
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 39/56 (69%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+LI G+S VGKTS +Q F+++KF + T+G+DF +K ++ G+ ++LQIWD
Sbjct: 10 LLIIGESNVGKTSILQRFIEDKFEKTFSTTIGIDFRSKNIN---INGKEIELQIWD 62
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 31/40 (77%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
LK+L+IG+S VGKTS +Q F+++KF + T+G+DF +K
Sbjct: 8 LKLLIIGESNVGKTSILQRFIEDKFEKTFSTTIGIDFRSK 47
>gi|307180592|gb|EFN68547.1| Ras-related protein Rab-8A [Camponotus floridanus]
Length = 279
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 95/163 (58%), Gaps = 9/163 (5%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
TY +L+ GDS VGKT V + ++ D Y +T+G+DF K+++ G P+KLQIWD
Sbjct: 71 TYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIIN---LDGTPIKLQIWDT 127
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ ++ YY+ + G ++M+D+T+ +SF + W ++ D + +L A
Sbjct: 128 AGQERFRTLTTAYYRGAMGILLMYDVTSLESFNHLSYWLRNIQENASPD----VVKVLAA 183
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
+KCD R V+ + + ++ M + EVS KE++ IE++
Sbjct: 184 NKCDATAHRAVDAERGQKIAENFD-MPFFEVSCKENINIEEAF 225
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+Y +L+ GDS VGKT V + ++ D Y +T+G+DF K+++ G P+KLQIWD
Sbjct: 71 TYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIIN---LDGTPIKLQIWD 126
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 71 AHKHINALPARELC-----KSNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYV 125
A + A P R LC S P A+ + D K+LV+GDS VGKT V
Sbjct: 34 AARPPRATPGRRLCCRPNNSSKPPETTAANMAL-----DFAATYKVLVLGDSNVGKTCIV 88
Query: 126 QGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ ++ D Y +T+G+DF K+++
Sbjct: 89 HRYCDERYYDTYISTIGIDFKQKIIN 114
>gi|168001170|ref|XP_001753288.1| Rab11/RabA-family small GTPase [Physcomitrella patens subsp.
patens]
gi|162695574|gb|EDQ81917.1| Rab11/RabA-family small GTPase [Physcomitrella patens subsp.
patens]
Length = 216
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 119/206 (57%), Gaps = 15/206 (7%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GDS VGK++ + + +N+F N K T+GV+F T+ + + GG+ +K QIWD A
Sbjct: 13 FKVVLIGDSAVGKSNLLSRYARNEFNLNSKATIGVEFQTQSM---EIGGKEIKAQIWDTA 69
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G +I++D++ R +FE+V +W +L + + A + +L+ +
Sbjct: 70 GQERFRAVTSAYYRGAVGALIVYDISRRGTFENVGRWLDELR----VHSDASVVVMLVGN 125
Query: 361 KCDLPDRQVEINEIEA-VCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI--ICSKRMEEE 417
KCDL D E+++ EA + Q MS+IE S+ + + ++ +V I + SK+
Sbjct: 126 KCDL-DNIREVSQEEATLLAQNEKMSFIETSAMDATNVTNAFQSVVKEIYRVVSKKPLAS 184
Query: 418 AVERKSSIRLSEET----LRDDQPKK 439
+ KS+ L + D QPKK
Sbjct: 185 STSMKSNTVLGSSQRLAGIDDTQPKK 210
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDS VGK++ + + +N+F N K T+GV+F T+ + + GG+ +K QIWD
Sbjct: 13 FKVVLIGDSAVGKSNLLSRYARNEFNLNSKATIGVEFQTQSM---EIGGKEIKAQIWD 67
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 159
+ K+++IGDS VGK++ + + +N+F N K T+GV+F T+ + + GG+
Sbjct: 12 LFKVVLIGDSAVGKSNLLSRYARNEFNLNSKATIGVEFQTQSM---EIGGKE 60
>gi|334326343|ref|XP_001364610.2| PREDICTED: hypothetical protein LOC100011001 [Monodelphis
domestica]
Length = 510
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 117/213 (54%), Gaps = 17/213 (7%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD A
Sbjct: 314 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNE---KRVKLQIWDTA 370
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G ++M+D++N++SF +V W + + DN + +L+ +
Sbjct: 371 GQERYRTITTAYYRGAMGFLLMYDVSNQESFNAVQDWATQIKTYS-WDNAQV---ILIGN 426
Query: 361 KCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL DR V + + + F + E S+K+++ ++ LVD IIC K M E
Sbjct: 427 KCDLEDDRVVSTEDGKHLADDLGF-EFFEASAKDNINVKQVFERLVD-IICEK-MNESLE 483
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
+I S+ T D P PA S+ C C
Sbjct: 484 AGSGTIGNSKATALSDAP----PAQ--SSNCSC 510
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K
Sbjct: 313 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVK 353
>gi|390459930|ref|XP_002806670.2| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-3C-like
[Callithrix jacchus]
Length = 225
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 111/194 (57%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 29 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 85
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 86 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 141
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D R + + + Q F + E S+K+++ ++ + LVD IIC K E +
Sbjct: 142 KCDMEDERVISTERGQHLGEQLGF-EFFETSAKDNINVKQTXERLVD-IICDKM--SEGL 197
Query: 420 ERKSSIRLSEETLR 433
E +I +++ R
Sbjct: 198 ETDPAITAAKQNTR 211
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 29 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 83
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 28 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 70
>gi|344253374|gb|EGW09478.1| Ras-related protein Rab-43 [Cricetulus griseus]
Length = 201
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 100/170 (58%), Gaps = 8/170 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ G+ +VGKT VQ F F +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 8 FKLVLGGEESVGKTCVVQRFKTGVFSARQGSTIGVDFTMKTLEIQ---GKRVKLQIWDTA 64
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D+T R +F SV W D+ G+ + LL+ +
Sbjct: 65 GQERFRTITQSYYRSANGAILAYDITKRSTFLSVPHWIEDVRKYA----GSNIVQLLIGN 120
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
K DL D R+V + E +++ Y+ + IE S+K+ +E++ + +I
Sbjct: 121 KSDLADFREVPLTEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATELI 170
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ G+ +VGKT VQ F F +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 8 FKLVLGGEESVGKTCVVQRFKTGVFSARQGSTIGVDFTMKTLEIQ---GKRVKLQIWD 62
>gi|225713348|gb|ACO12520.1| Ras-related protein Rab-35 [Lepeophtheirus salmonis]
gi|225713898|gb|ACO12795.1| Ras-related protein Rab-35 [Lepeophtheirus salmonis]
gi|290561314|gb|ADD38059.1| Ras-related protein Rab-35 [Lepeophtheirus salmonis]
Length = 223
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 99/174 (56%), Gaps = 7/174 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F NY T+GVDF + L + G VKLQIWD A
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNSFTGNYITTIGVDFKIRTL---EVNGERVKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D++N +SF +V +W H++D C + ++ +L+ +
Sbjct: 67 GQERFRTITATYYRGTHGVIVVYDVSNGESFANVKRWLHEIDQNC---SSEVVSRVLVGN 123
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K D ++V + E + E S+KE+ +E+ L + ++ SK+
Sbjct: 124 KNDGDTAKKVVLTEDAKRFSDQMGIRLFETSAKENFNVEEMFKSLTELVLKSKK 177
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F NY T+GVDF + L + G VKLQIWD
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNSFTGNYITTIGVDFKIRTL---EVNGERVKLQIWD 64
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
D + + K+L+IGDS VGK+S + F N F NY T+GVDF + L
Sbjct: 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNSFTGNYITTIGVDFKIRTL 51
>gi|427787177|gb|JAA59040.1| Putative rab-protein 10 [Rhipicephalus pulchellus]
Length = 200
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 108/190 (56%), Gaps = 13/190 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F + F + +T+G+DF K + K G+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFHTTFISTIGIDFKIKTIELK---GKKIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSF+++ +W +D D + ++L +
Sbjct: 67 GQERFHTITTSYYRGAMGIMLVYDITNTKSFDNIAKWLRYIDEHANED----VEKMILGN 122
Query: 361 KCDLPDRQV---EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
KCD+ D+++ E E A+ H FM E S+K ++ IE + L + I+ + ++
Sbjct: 123 KCDMEDKRLISRERGEAVAIDHNIRFM---ETSAKTNVNIERAFTELAEAILNKQMAGKD 179
Query: 418 AVERKSSIRL 427
E + +R+
Sbjct: 180 QAENQDRLRV 189
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F + F + +T+G+DF K + K G+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFHTTFISTIGIDFKIKTIELK---GKKIKLQIWD 64
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 153
+ + K+L+IGDS VGKT + F + F + +T+G+DF K + K
Sbjct: 7 DLLFKLLLIGDSGVGKTCILFRFSDDAFHTTFISTIGIDFKIKTIELK 54
>gi|19424194|ref|NP_598220.1| ras-related protein Rab-3C [Rattus norvegicus]
gi|1373214|gb|AAC52879.1| GTP-binding protein [Rattus norvegicus]
Length = 227
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 108/195 (55%), Gaps = 15/195 (7%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 87
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 88 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 143
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D R V + Q F + E S+K+++ ++ + LVD IIC K E
Sbjct: 144 KCDMEDERVVSTERGRHLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKMSESLET 201
Query: 420 E-----RKSSIRLSE 429
+ K S RL E
Sbjct: 202 DPAITGAKQSTRLKE 216
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 85
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 72
>gi|380449163|gb|AFD54570.1| Ras-related protein Rab7 [Litopenaeus vannamei]
Length = 205
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 89/156 (57%), Gaps = 3/156 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++J GDS VGKTS + FV KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIJLGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEV---MVDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T+ +F+S+ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTSPNTFKSLDSWRDEFLIQASPRDPDHFPFVVLXNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398
DL +R V + CH N + E S+KE + +E
Sbjct: 128 DLENRAVSTKRAQQWCHSKNEXPYFETSAKEAINVE 163
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + FV KF + YK T+G DF TK
Sbjct: 3 SRKKILLKVIJLGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTK 48
>gi|340373098|ref|XP_003385079.1| PREDICTED: ras-related protein Rab-13-like [Amphimedon
queenslandica]
Length = 219
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 116/212 (54%), Gaps = 14/212 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS+VGKT + F N+F + NT+G+DF KL + + + +++QIWD A
Sbjct: 13 FQLLLCGDSSVGKTCLISRFADNEFRHTHINTIGIDFKLKLFTIRD---KKIRMQIWDTA 69
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM-LPCLLLA 359
GQ+RY ++ YY+ + G I+++D+T ++F +V +W +++ D+G + +L+
Sbjct: 70 GQERYETLTAQYYRKAQGIILVYDITREETFRNVTKWLRNIE-----DHGVKGVKIILIG 124
Query: 360 SKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
+K DL +R++ + + +Q+N + + E S+ + + + ++ L ++I+
Sbjct: 125 NKVDLESERKISTRHGQKLANQHN-IKFFETSAWKDINVTEAFTELAEQILAKVESGGGR 183
Query: 419 VERKSSIRLSEETLRDDQPKKLVPADKVSTYC 450
SSIR S L + QP PA K C
Sbjct: 184 DRGSSSIRESAIKLHEQQP---TPATKSHGGC 212
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS+VGKT + F N+F + NT+G+DF KL + + + +++QIWD
Sbjct: 13 FQLLLCGDSSVGKTCLISRFADNEFRHTHINTIGIDFKLKLFTIRD---KKIRMQIWD 67
Score = 44.7 bits (104), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ ++L+ GDS+VGKT + F N+F + NT+G+DF KL +
Sbjct: 12 LFQLLLCGDSSVGKTCLISRFADNEFRHTHINTIGIDFKLKLFT 55
>gi|184186083|ref|NP_001116967.1| rab3 GTPase [Strongylocentrotus purpuratus]
gi|60653473|gb|AAB67800.2| GTP-binding protein [Strongylocentrotus purpuratus]
Length = 219
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 105/176 (59%), Gaps = 10/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD A
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRQD---KRVKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF SV W + + DN + +L+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDVTNEESFNSVQDWCTQIKTYS-WDNAQV---ILVGN 135
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D R + ++ + + Q + + E S+KE++ ++ + LVD IIC K E
Sbjct: 136 KCDMEDERVISTDKGKQLADQLG-LEFFETSAKENINVKQTFERLVD-IICDKMSE 189
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRQD---KRVKLQIWD 77
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 64
>gi|195375225|ref|XP_002046402.1| GJ12523 [Drosophila virilis]
gi|194153560|gb|EDW68744.1| GJ12523 [Drosophila virilis]
Length = 220
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 102/171 (59%), Gaps = 11/171 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD GKTS +Q F +++ + NT+GVDFS K + + G+ VKLQIWD A
Sbjct: 22 FKIVLIGDCCTGKTSILQRFKTGNYVERHGNTIGVDFSMKTI---EVEGKQVKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+ ++G II++D+T R +F ++ +W ++ + + +L+ +
Sbjct: 79 GQERFRTITQSYYRANNGVIIVYDITKRSTFANLQKWIEEVRRY----TASNVLIILIGN 134
Query: 361 KCDL-PDRQVEINEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDRI 408
KCDL +R+V+ E +C QY + +E S+KE+ +ED+ L +
Sbjct: 135 KCDLEAEREVDFEEARQMC-QYIPEILFVMETSAKENTNVEDAFRCLATEL 184
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD GKTS +Q F +++ + NT+GVDFS K + + G+ VKLQIWD
Sbjct: 22 FKIVLIGDCCTGKTSILQRFKTGNYVERHGNTIGVDFSMKTI---EVEGKQVKLQIWD 76
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P + + + KI++IGD GKTS +Q F +++ + NT+GVDFS K +
Sbjct: 13 PSEENFDFLFKIVLIGDCCTGKTSILQRFKTGNYVERHGNTIGVDFSMKTI 63
>gi|195135342|ref|XP_002012093.1| GI16780 [Drosophila mojavensis]
gi|193918357|gb|EDW17224.1| GI16780 [Drosophila mojavensis]
Length = 219
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 102/171 (59%), Gaps = 11/171 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD GKTS +Q F +++ + NT+GVDFS K + + G+ VKLQIWD A
Sbjct: 22 FKIVLIGDCCTGKTSILQRFKTGNYVERHGNTIGVDFSMKTI---EVEGKQVKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+ ++G II++D+T R +F ++ +W ++ + + +L+ +
Sbjct: 79 GQERFRTITQSYYRANNGVIIVYDITKRATFANLQKWIEEVRRY----TASNVLIILIGN 134
Query: 361 KCDLP-DRQVEINEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDRI 408
KCDL +R+V+ E +C QY + +E S+KE+ +ED+ L +
Sbjct: 135 KCDLESEREVDFEEARQMC-QYIPEILFVMETSAKENTNVEDAFRCLATEL 184
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD GKTS +Q F +++ + NT+GVDFS K + + G+ VKLQIWD
Sbjct: 22 FKIVLIGDCCTGKTSILQRFKTGNYVERHGNTIGVDFSMKTI---EVEGKQVKLQIWD 76
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P + + + KI++IGD GKTS +Q F +++ + NT+GVDFS K +
Sbjct: 13 PNEENFDFLFKIVLIGDCCTGKTSILQRFKTGNYVERHGNTIGVDFSMKTI 63
>gi|118387620|ref|XP_001026914.1| Ras-related protein Rab11A, putative [Tetrahymena thermophila]
gi|89308681|gb|EAS06669.1| Ras-related protein Rab11A, putative [Tetrahymena thermophila
SB210]
gi|307777774|dbj|BAJ21283.1| Rab-family small GTPase Rab11B [Tetrahymena thermophila]
Length = 214
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 105/170 (61%), Gaps = 11/170 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ I++ GDS VGKT+ + F +N+F + K T+GV+F+TK +++ KY +K QIWD
Sbjct: 13 FKIVLIGDSGVGKTNLLSRFTKNEFNMDSKPTIGVEFATKTVITENKY----IKAQIWDT 68
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ++Y ++ YY+ + G + ++D+T +++F++V +W H+L A + C+L+
Sbjct: 69 AGQEKYRAITNAYYRGAVGALTLYDITKQQTFDNVKKWLHELREYA----DANIICMLIG 124
Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+KCDL + RQV+ + + N ++++E S+ + + ++ + L+ I
Sbjct: 125 NKCDLQEMRQVKTEDAAKFAEENN-LAFMETSAAQAINVDQAFQKLITEI 173
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKY 155
+ KI++IGDS VGKT+ + F +N+F + K T+GV+F+TK +++ KY
Sbjct: 12 LFKIVLIGDSGVGKTNLLSRFTKNEFNMDSKPTIGVEFATKTVITENKY 60
>gi|195325951|ref|XP_002029694.1| GM25038 [Drosophila sechellia]
gi|194118637|gb|EDW40680.1| GM25038 [Drosophila sechellia]
Length = 219
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 104/171 (60%), Gaps = 11/171 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD GKT V F +++ + NT+GVDFS K ++ + G+ +KLQIWD A
Sbjct: 22 FKIVLIGDCGTGKTCIVDRFKTGNYIERHGNTIGVDFSMKTIAVE---GKQIKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G +I++D+T R SF ++ +W ++ + + +L+ +
Sbjct: 79 GQERFRTITQSYYRSANGVLIVYDITKRSSFSNLQKWIEEVRRY----TASNVLIILVGN 134
Query: 361 KCDLPD-RQVEINEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDRI 408
KCDL + R+V+ E +C QY + +E S+KE++ +ED+ L + +
Sbjct: 135 KCDLEEQREVDFEEARQMC-QYIPEILFVMETSAKENMNVEDAFRCLANEL 184
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD GKT V F +++ + NT+GVDFS K ++ + G+ +KLQIWD
Sbjct: 22 FKIVLIGDCGTGKTCIVDRFKTGNYIERHGNTIGVDFSMKTIAVE---GKQIKLQIWD 76
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P + + KI++IGD GKT V F +++ + NT+GVDFS K ++
Sbjct: 13 PNEEHFDFLFKIVLIGDCGTGKTCIVDRFKTGNYIERHGNTIGVDFSMKTIA 64
>gi|426233532|ref|XP_004010770.1| PREDICTED: ras-related protein Rab-15 [Ovis aries]
Length = 212
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 119/213 (55%), Gaps = 10/213 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + + G V++QIWD A
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI---EVDGIKVRIQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY +++ YY+ + G +++D+++ +S++ +++W D+D + +L+ +
Sbjct: 66 GQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA----PEGVQKILIGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D RQV + + + +Y M + E S+ +L I++S L + ++ + R E E +
Sbjct: 122 KADEEQKRQVGREQGQQLAREYG-MDFYETSACTNLNIKESFTRLTELVLQAHRKELEGL 180
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
+++ L+ L +D+ K P + T CWC
Sbjct: 181 RTRANHELALAELEEDEGKPEGPENSSKT-CWC 212
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + + G V++QIWD
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI---EVDGIKVRIQIWD 63
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ + ++L+IGDS VGKT + F N+F ++ +T+GVDF K +
Sbjct: 6 DVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIE 51
>gi|410924594|ref|XP_003975766.1| PREDICTED: ras-related protein Rab-3A-like [Takifugu rubripes]
Length = 219
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 105/177 (59%), Gaps = 11/177 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 22 FKILIIGNSSVGKTSFLFRYADDSFTPTFVSTVGIDFKVKTIYRSD---KRIKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN SF +V W + + DN + LL+ +
Sbjct: 79 GQERYRTITTAYYRGAMGFILMYDITNEDSFNAVQDWSTQIKTYS-WDNAQV---LLVGN 134
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
KCD+ D +V ++ + + Q F + E S+K+++ ++ + LVD IIC +RM E
Sbjct: 135 KCDMEDERVVASQRGQQLSDQLGF-EFFETSAKDNINVKQTFERLVD-IIC-ERMSE 188
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 12 ETSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPTFVSTVGIDFKVKTI 63
>gi|156087801|ref|XP_001611307.1| Rab7 [Babesia bovis]
gi|154798561|gb|EDO07739.1| Rab7 [Babesia bovis]
Length = 233
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 90/155 (58%), Gaps = 4/155 (2%)
Query: 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
P I+I GDS VGKTS + F+ +F + Y+ T+G DFST+ ++ + V LQIWD
Sbjct: 24 PILKIIILGDSGVGKTSLMNQFINKRFTNQYRATIGADFSTQEVT---VDDKVVTLQIWD 80
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
AGQ+R+ + + +Y+ +D C++++D TN+K+FES+ WK + + + P L+
Sbjct: 81 TAGQERFQSLGKAFYRGADCCMLVYDTTNQKTFESIESWKSEFLIQVEPKDPESFPFALI 140
Query: 359 ASKC-DLPDRQVEINEIEAVCHQYNFMSWIEVSSK 392
+K D+ +R+V N+ C N + E S+K
Sbjct: 141 GNKVDDVANRKVSANKATNWCKANNDIPHFETSAK 175
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
P I+I GDS VGKTS + F+ +F + Y+ T+G DFST+ ++ + V LQIWD
Sbjct: 24 PILKIIILGDSGVGKTSLMNQFINKRFTNQYRATIGADFSTQEVT---VDDKVVTLQIWD 80
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+LKI+++GDS VGKTS + F+ +F + Y+ T+G DFST+
Sbjct: 25 ILKIIILGDSGVGKTSLMNQFINKRFTNQYRATIGADFSTQ 65
>gi|32492056|gb|AAP85300.1| Rab7 [Babesia bovis]
Length = 215
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 90/155 (58%), Gaps = 4/155 (2%)
Query: 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
P I+I GDS VGKTS + F+ +F + Y+ T+G DFST+ ++ + V LQIWD
Sbjct: 6 PILKIIILGDSGVGKTSLMNQFINKRFTNQYRATIGADFSTQEVT---VDDKVVTLQIWD 62
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
AGQ+R+ + + +Y+ +D C++++D TN+K+FES+ WK + + + P L+
Sbjct: 63 TAGQERFQSLGKAFYRGADCCMLVYDTTNQKTFESIESWKSEFLIQVEPKDPESFPFALI 122
Query: 359 ASKC-DLPDRQVEINEIEAVCHQYNFMSWIEVSSK 392
+K D+ +R+V N+ C N + E S+K
Sbjct: 123 GNKVDDVANRKVSANKATNWCKANNDIPHFEASAK 157
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
P I+I GDS VGKTS + F+ +F + Y+ T+G DFST+ ++ + V LQIWD
Sbjct: 6 PILKIIILGDSGVGKTSLMNQFINKRFTNQYRATIGADFSTQEVT---VDDKVVTLQIWD 62
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+LKI+++GDS VGKTS + F+ +F + Y+ T+G DFST+
Sbjct: 7 ILKIIILGDSGVGKTSLMNQFINKRFTNQYRATIGADFSTQ 47
>gi|443686970|gb|ELT90087.1| hypothetical protein CAPTEDRAFT_55121, partial [Capitella teleta]
Length = 169
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 96/170 (56%), Gaps = 4/170 (2%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
TY +L+ GD+ VGKT+ ++ +F N+ TVG+DF K G V+LQIWD
Sbjct: 3 TYKVLLLGDTGVGKTALIRSLTGTEFKANHLTTVGIDFVKKTFDAD---GALVQLQIWDT 59
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ +++ Y+++ G ++++D+T+R SFE++ W +DS+ +N +P ++
Sbjct: 60 AGQERFRSLTKFQYRSTKGLLLVYDVTDRTSFETLGYWLDSIDSELDRNNKEPVPVFIVG 119
Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+K DL + R V E + + ++E S+K + ++ N L D I
Sbjct: 120 NKTDLEESRVVSTQEGKKAAESHYVHGFLETSAKNGHNVSEAFNKLADAI 169
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+Y +L+ GD+ VGKT+ ++ +F N+ TVG+DF K G V+LQIWD
Sbjct: 3 TYKVLLLGDTGVGKTALIRSLTGTEFKANHLTTVGIDFVKKTFDAD---GALVQLQIWD 58
>gi|427787329|gb|JAA59116.1| Putative rab-protein 3 [Rhipicephalus pulchellus]
Length = 221
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 100/176 (56%), Gaps = 10/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 22 FKILIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWDT 77
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++ YY+ + G I+M+D+TN +SF SV W + + DN + +L+
Sbjct: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFNSVQDWVTQIKTYS-WDNAQV---ILVG 133
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
+KCD+ D +V E + + E S+KE++ ++ LVD IIC K E
Sbjct: 134 NKCDMEDERVVSAERGRQLADQLGLEFFETSAKENVNVKAVFERLVD-IICDKMSE 188
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 22 FKILIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWD 76
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKK 154
+ KIL+IG+S+VGKTS++ + + F + +TVG+DF K + H K
Sbjct: 21 MFKILIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK 68
>gi|441628727|ref|XP_003275954.2| PREDICTED: ras-related protein Rab-3A, partial [Nomascus
leucogenys]
Length = 186
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 99/172 (57%), Gaps = 8/172 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNA---QVLLVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCD+ D +V +E + + E S+K+++ ++ + LVD +IC K
Sbjct: 136 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEK 186
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
Query: 154 KYGGRPYGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 211
+YG + S Q Y+ ILI G+S+VGKTS++ + + F + +TVG+DF K
Sbjct: 8 RYGQKE----SSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKT 63
Query: 212 LSHKKYGGRPVKLQIWD 228
+ + +KLQIWD
Sbjct: 64 IYRND---KRIKLQIWD 77
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 13 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 64
>gi|344287847|ref|XP_003415663.1| PREDICTED: ras-related protein Rab-39A-like [Loxodonta africana]
Length = 217
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 100/181 (55%), Gaps = 11/181 (6%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYG 288
+ I I + +++ GDSTVGK+ + F Q +F TVGVDF ++LL +
Sbjct: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP-- 58
Query: 289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD 348
G+ +KLQ+WD AGQ+R+ ++R YY+NS G ++FD+TNR+SFE V W L+ +
Sbjct: 59 GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVRDW---LEEAKMYV 115
Query: 349 NGAMLPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
+ LL+ KCDL RQV E E + M +IE S+K+ +E+S L
Sbjct: 116 QPFRIVFLLVGHKCDLASQRQVTREEAEKLSADCG-MKYIETSAKDATNVEESFTILTRD 174
Query: 408 I 408
I
Sbjct: 175 I 175
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
+ +++ GDSTVGK+ + F Q +F TVGVDF ++LL + G+ +KLQ+
Sbjct: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP--GKRIKLQL 66
Query: 227 WD 228
WD
Sbjct: 67 WD 68
>gi|427787355|gb|JAA59129.1| Putative rab-protein 3 [Rhipicephalus pulchellus]
Length = 221
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 100/176 (56%), Gaps = 10/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 22 FKILIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWDT 77
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++ YY+ + G I+M+D+TN +SF SV W + + DN + +L+
Sbjct: 78 AGQERYRTITTAYYRGAMGFILMYDVTNEESFNSVQDWVTQIKTYS-WDNAQV---ILVG 133
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
+KCD+ D +V E + + E S+KE++ ++ LVD IIC K E
Sbjct: 134 NKCDMEDERVVSAERGRQLADQLGLEFFETSAKENVNVKAVFERLVD-IICDKMSE 188
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 22 FKILIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWD 76
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKK 154
+ KIL+IG+S+VGKTS++ + + F + +TVG+DF K + H K
Sbjct: 21 MFKILIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK 68
>gi|391343074|ref|XP_003745839.1| PREDICTED: ras-related protein Rab-10-like [Metaseiulus
occidentalis]
Length = 204
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 111/185 (60%), Gaps = 10/185 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFHTTFISTIGIDFKIKTI---ELHGKKIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN++SFE++ +W +D D + ++L +
Sbjct: 67 GQERFHTITTSYYRGAMGIMLVYDITNQRSFENIAKWLRYIDEHANED----VEKMILGN 122
Query: 361 KCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ R + ++ EA+ +N +S++E S+K ++ IE++ L + I+ K+ AV
Sbjct: 123 KCDMELKRVISKDKGEAIARDHN-ISFLETSAKANINIEEAFTQLAEAIL-QKQTSGRAV 180
Query: 420 ERKSS 424
+ +S
Sbjct: 181 DAATS 185
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFHTTFISTIGIDFKIKTI---ELHGKKIKLQIWD 64
Score = 38.1 bits (87), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ + K+L+IGDS VGKT + F + F + +T+G+DF K +
Sbjct: 7 DLLFKLLLIGDSGVGKTCILFRFSDDAFHTTFISTIGIDFKIKTI 51
>gi|378726191|gb|EHY52650.1| Ras-like protein Rab7 [Exophiala dermatitidis NIH/UT8656]
Length = 205
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 106/194 (54%), Gaps = 5/194 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF +YK T+G DF TK ++ R V LQ+WD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSTSYKATIGADFLTKEVT---VDDRIVTLQLWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+ + KSFE++ W+ + + + P +++ +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVNSAKSFETLDSWRDEFLIQASPRDPESFPFVVIGNKI 127
Query: 363 DLPDRQVEINEIEAV--CHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
DL + + I++ A+ C Q M + E S+KE + +E + + + + EE +
Sbjct: 128 DLGEERRMISQKRALAYCQQRGQMPYFETSAKESINVEQAFEVIARNALAQEESEEYGGD 187
Query: 421 RKSSIRLSEETLRD 434
I ++ + RD
Sbjct: 188 FSDPININLDQERD 201
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF +YK T+G DF TK ++ R V LQ+WD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSTSYKATIGADFLTKEVT---VDDRIVTLQLWD 63
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF +YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSTSYKATIGADFLTK 48
>gi|55846766|gb|AAV67387.1| ras-associated protein rab3A [Macaca fascicularis]
Length = 194
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 100/173 (57%), Gaps = 8/173 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD AGQ
Sbjct: 1 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTAGQ 57
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +KC
Sbjct: 58 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGNKC 113
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
D+ D +V +E + + E S+K+++ ++ + LVD +IC K E
Sbjct: 114 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEKMSE 165
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 1 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 53
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 111 ILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
IL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 1 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 40
>gi|17737545|ref|NP_523970.1| Rab19, isoform A [Drosophila melanogaster]
gi|442630989|ref|NP_001261575.1| Rab19, isoform B [Drosophila melanogaster]
gi|194865952|ref|XP_001971685.1| GG14295 [Drosophila erecta]
gi|195491260|ref|XP_002093486.1| GE20724 [Drosophila yakuba]
gi|195588689|ref|XP_002084090.1| GD14074 [Drosophila simulans]
gi|2313047|dbj|BAA21712.1| rab-related protein 3 [Drosophila melanogaster]
gi|7295127|gb|AAF50452.1| Rab19, isoform A [Drosophila melanogaster]
gi|17945955|gb|AAL49022.1| RE48347p [Drosophila melanogaster]
gi|190653468|gb|EDV50711.1| GG14295 [Drosophila erecta]
gi|194179587|gb|EDW93198.1| GE20724 [Drosophila yakuba]
gi|194196099|gb|EDX09675.1| GD14074 [Drosophila simulans]
gi|220948860|gb|ACL86973.1| Rab-RP3-PA [synthetic construct]
gi|440215482|gb|AGB94270.1| Rab19, isoform B [Drosophila melanogaster]
Length = 219
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 104/171 (60%), Gaps = 11/171 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD GKT V F +++ + NT+GVDFS K ++ + G+ +KLQIWD A
Sbjct: 22 FKIVLIGDCGTGKTCIVDRFKTGNYIERHGNTIGVDFSMKTIAVE---GKQIKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G +I++D+T R SF ++ +W ++ + + +L+ +
Sbjct: 79 GQERFRTITQSYYRSANGVLIVYDITKRSSFSNLQKWIEEVRRY----TASNVLIILVGN 134
Query: 361 KCDLPD-RQVEINEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDRI 408
KCDL + R+V+ E +C QY + +E S+KE++ +ED+ L + +
Sbjct: 135 KCDLEEQREVDFEEARQMC-QYIPEILFVMETSAKENMNVEDAFRCLANEL 184
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD GKT V F +++ + NT+GVDFS K ++ + G+ +KLQIWD
Sbjct: 22 FKIVLIGDCGTGKTCIVDRFKTGNYIERHGNTIGVDFSMKTIAVE---GKQIKLQIWD 76
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P + + KI++IGD GKT V F +++ + NT+GVDFS K ++
Sbjct: 13 PNEEHFDFLFKIVLIGDCGTGKTCIVDRFKTGNYIERHGNTIGVDFSMKTIA 64
>gi|340501803|gb|EGR28543.1| rab gtpase, putative [Ichthyophthirius multifiliis]
Length = 209
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 88/154 (57%), Gaps = 4/154 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I+I GDS VGKTS + +V +F Y+ TVG DF K + R V LQIWD A
Sbjct: 10 FKIIILGDSGVGKTSLMNQYVNARFTQQYRATVGADFMAKEVM---IDDRMVTLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ + +Y+ +D C++++D+TN+KSFES+ WK + + + P ++L +
Sbjct: 67 GQERFQSLGGAFYRGADCCVLVYDITNKKSFESLESWKEEFKQQGQPKDPDNFPFVVLGN 126
Query: 361 KCD-LPDRQVEINEIEAVCHQYNFMSWIEVSSKE 393
KCD +R+VE + C + + E S+KE
Sbjct: 127 KCDRASERKVESDFASQWCKSHGDLLNFETSAKE 160
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I+I GDS VGKTS + +V +F Y+ TVG DF K + R V LQIWD
Sbjct: 10 FKIIILGDSGVGKTSLMNQYVNARFTQQYRATVGADFMAKEVM---IDDRMVTLQIWD 64
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ KI+++GDS VGKTS + +V +F Y+ TVG DF K
Sbjct: 9 LFKIIILGDSGVGKTSLMNQYVNARFTQQYRATVGADFMAK 49
>gi|281202982|gb|EFA77183.1| Rab GTPase [Polysphondylium pallidum PN500]
Length = 199
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 105/168 (62%), Gaps = 6/168 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y I++ G++ VGK+S + F N F ++ T+GVDF+ K + +K+ G + VKLQ+WD A
Sbjct: 8 YKIILVGETAVGKSSILVRFTDNTFTPHFAPTLGVDFNVKTIRNKETG-QTVKLQLWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ +Y+ S G I+++D+T+ KSF+ W D+++ + G M+ +L+ +
Sbjct: 67 GQERFKSITQTFYRGSHGVIVVYDITDSKSFDRCRNWIEDINNYSM---GGMI-MILVGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
K DLP R+V + +A+ + + ++E S+K+++ + + +V I
Sbjct: 123 KSDLPSRKVTYEQGKALADELG-IKFLETSAKDNVGVNAVFDTIVQDI 169
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
Y I++ G++ VGK+S + F N F ++ T+GVDF+ K + +K+ G+ VKLQ+WD
Sbjct: 8 YKIILVGETAVGKSSILVRFTDNTFTPHFAPTLGVDFNVKTIRNKET-GQTVKLQLWD 64
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 37/54 (68%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG 156
S+ ET+ KI+++G++ VGK+S + F N F ++ T+GVDF+ K + +K+ G
Sbjct: 2 SEEETLYKIILVGETAVGKSSILVRFTDNTFTPHFAPTLGVDFNVKTIRNKETG 55
>gi|39930371|ref|NP_059986.1| ras-related protein Rab-39A [Homo sapiens]
gi|109108559|ref|XP_001103335.1| PREDICTED: ras-related protein Rab-39A [Macaca mulatta]
gi|332208110|ref|XP_003253140.1| PREDICTED: ras-related protein Rab-39A [Nomascus leucogenys]
gi|395861427|ref|XP_003802988.1| PREDICTED: ras-related protein Rab-39A-like [Otolemur garnettii]
gi|397516356|ref|XP_003828396.1| PREDICTED: ras-related protein Rab-39A [Pan paniscus]
gi|402895143|ref|XP_003910693.1| PREDICTED: ras-related protein Rab-39A [Papio anubis]
gi|46577701|sp|Q14964.2|RB39A_HUMAN RecName: Full=Ras-related protein Rab-39A; Short=Rab-39
gi|20380206|gb|AAH28064.1| RAB39, member RAS oncogene family [Homo sapiens]
gi|119587504|gb|EAW67100.1| RAB39, member RAS oncogene family [Homo sapiens]
gi|158259399|dbj|BAF85658.1| unnamed protein product [Homo sapiens]
gi|325464161|gb|ADZ15851.1| RAB39, member RAS oncogene family [synthetic construct]
Length = 217
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 100/181 (55%), Gaps = 11/181 (6%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYG 288
+ I I + +++ GDSTVGK+ + F Q +F TVGVDF ++LL +
Sbjct: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP-- 58
Query: 289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD 348
G+ +KLQ+WD AGQ+R+ ++R YY+NS G ++FD+TNR+SFE V W L+ +
Sbjct: 59 GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDW---LEEAKMYV 115
Query: 349 NGAMLPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
+ LL+ KCDL RQV E E + M +IE S+K+ +E+S L
Sbjct: 116 QPFRIVFLLVGHKCDLASQRQVTREEAEKLSADCG-MKYIETSAKDATNVEESFTILTRD 174
Query: 408 I 408
I
Sbjct: 175 I 175
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
+ +++ GDSTVGK+ + F Q +F TVGVDF ++LL + G+ +KLQ+
Sbjct: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP--GKRIKLQL 66
Query: 227 WD 228
WD
Sbjct: 67 WD 68
>gi|145513861|ref|XP_001442841.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74834271|emb|CAI44501.1| rab_C34 [Paramecium tetraurelia]
gi|124410202|emb|CAK75444.1| unnamed protein product [Paramecium tetraurelia]
Length = 210
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 113/204 (55%), Gaps = 19/204 (9%)
Query: 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
+++ GDS VGKT+ + F KF NY T+GVDF K+L+ + + +KLQIWD AG
Sbjct: 11 KVIVLGDSGVGKTNILTQFCDQKFSQNYTATIGVDFKIKILNVQD---KKIKLQIWDTAG 67
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC-LLLAS 360
Q+R+ +++ YY+ + G I ++ L +R SF +V W K IL++ C +L+ +
Sbjct: 68 QERFRNITQTYYKGAFGIIFVYSLIDRNSFNNVEGW-----IKSILESTTDEVCSILVGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
K D DR+V+ E E + +YN M +IE S+ E+ I+D + L + R+E E +
Sbjct: 123 KLDSQDRRVQTAEGEKLAQKYN-MPFIETSALENKNIQDIFDRLGQNL--KIRLENEGQK 179
Query: 421 -------RKSSIRLSEETLRDDQP 437
+ +L++E + +QP
Sbjct: 180 VSNNTHTQSGQFKLNQEANQTEQP 203
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ GDS VGKT+ + F KF NY T+GVDF K+L+ + + +KLQIWD
Sbjct: 12 VIVLGDSGVGKTNILTQFCDQKFSQNYTATIGVDFKIKILNVQD---KKIKLQIWD 64
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
++K++V+GDS VGKT+ + F KF NY T+GVDF K+L+
Sbjct: 9 LVKVIVLGDSGVGKTNILTQFCDQKFSQNYTATIGVDFKIKILN 52
>gi|380020626|ref|XP_003694183.1| PREDICTED: ras-related protein Rab-3-like [Apis florea]
Length = 228
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 101/177 (57%), Gaps = 12/177 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 27 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWDT 82
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDS-KCILDNGAMLPCLLL 358
AGQ+RY ++ YY+ + G I+M+D+TN +SF SV W + + C DN + +L+
Sbjct: 83 AGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWVTQIKTYSC--DNAQV---ILV 137
Query: 359 ASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
+KCD+ D +V E + + E S+KE++ I+ LVD IIC K E
Sbjct: 138 GNKCDMEDERVITTERGKQLADQLGVQFFETSAKENINIKTVFEQLVD-IICDKMSE 193
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 27 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWD 81
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKK 154
E + + + K+L+IG+S+VGKTS++ + + F + +TVG+DF K + H K
Sbjct: 17 EAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK 73
>gi|401412488|ref|XP_003885691.1| putative Ras family domain-containing protein [Neospora caninum
Liverpool]
gi|325120111|emb|CBZ55665.1| putative Ras family domain-containing protein [Neospora caninum
Liverpool]
Length = 244
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 98/177 (55%), Gaps = 14/177 (7%)
Query: 235 PIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 294
P + P+Y ++ GD++VGK+S V FV+N F D + T+G F T+ L + GR VK
Sbjct: 36 PARPPSYKTVLLGDASVGKSSLVVRFVKNTFSDTMETTIGAAFFTQAL---QVDGRTVKF 92
Query: 295 QIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP 354
+IWD AGQ+R+ ++ +YY+ + I+++D +N SF+ W L L + +
Sbjct: 93 EIWDTAGQERFSSLAPMYYRGAAAAIVVYDQSNMASFDRAQVWVQQLQ----LSGNSNIV 148
Query: 355 CLLLASKCDLPDRQVEINEIEAVCHQY---NFMSWIEVSSKEHLMIEDSMNFLVDRI 408
L A+K DLP +QV++N + QY N + +IE S+K ++ + + R+
Sbjct: 149 IALAANKMDLPHKQVDLN----LGRQYAEENGLLFIETSAKTGQNVQQLFSMIARRL 201
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 11/130 (8%)
Query: 165 PIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
P + PSY ++ GD++VGK+S V FV+N F D + T+G F T+ L + GR VK
Sbjct: 36 PARPPSYKTVLLGDASVGKSSLVVRFVKNTFSDTMETTIGAAFFTQAL---QVDGRTVKF 92
Query: 225 QIWDI-----YCTLSPI--QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 277
+IWD + +L+P+ + I++ S + Q +VQ L N V
Sbjct: 93 EIWDTAGQERFSSLAPMYYRGAAAAIVVYDQSNMASFDRAQVWVQQLQLSGNSNIVIALA 152
Query: 278 STKL-LSHKK 286
+ K+ L HK+
Sbjct: 153 ANKMDLPHKQ 162
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 80 ARELCKSNSPSPRASVIGFEP-RPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYK 138
A L +S+ P AS EP RP +TVL +GD++VGK+S V FV+N F D +
Sbjct: 20 ASGLGQSSFAGPAAS----EPARPPSYKTVL----LGDASVGKSSLVVRFVKNTFSDTME 71
Query: 139 NTVGVDFSTKLL 150
T+G F T+ L
Sbjct: 72 TTIGAAFFTQAL 83
>gi|410926932|ref|XP_003976922.1| PREDICTED: ras-related protein Rab-39A-like [Takifugu rubripes]
Length = 231
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 100/179 (55%), Gaps = 7/179 (3%)
Query: 228 DIYCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 287
D L + + I++ GDSTVGK+S V+ + + F D+ TVGVDF L ++
Sbjct: 12 DASAHLQTLWRYQFRIIMLGDSTVGKSSLVKRYAEGLFQDSINQTVGVDFYVHFLEVEQ- 70
Query: 288 GGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCIL 347
G VKLQ WD AGQ+R+ ++R YY+NS G ++MFD+TNR SFE + +W ++ C
Sbjct: 71 -GVHVKLQFWDTAGQERFRSVTRSYYRNSAGGLLMFDMTNRVSFEHIKEWHREV---CDH 126
Query: 348 DNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLV 405
+ + +L+ +K D + R V E EA+ + M ++EVS++ + ++ L
Sbjct: 127 VHPYKVLFILVGNKSDKAEGRLVGREEAEALARELG-MPYVEVSARTGQNVSNAFELLA 184
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDSTVGK+S V+ + + F D+ TVGVDF L ++ G VKLQ WD
Sbjct: 25 FRIIMLGDSTVGKSSLVKRYAEGLFQDSINQTVGVDFYVHFLEVEQ--GVHVKLQFWD 80
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+I+++GDSTVGK+S V+ + + F D+ TVGVDF L
Sbjct: 25 FRIIMLGDSTVGKSSLVKRYAEGLFQDSINQTVGVDFYVHFL 66
>gi|195998137|ref|XP_002108937.1| Rab7 protein [Trichoplax adhaerens]
gi|190589713|gb|EDV29735.1| Rab7 protein [Trichoplax adhaerens]
Length = 205
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 89/159 (55%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK---EVMVDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T SF+S+ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTVANSFKSLDGWRDEFLIQASPRDSENFPFVVLGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +R V + + C N + + E S+KE + +E +
Sbjct: 128 DLENRAVTMKRAQNWCTSKNNIPYFETSAKEAINVEQAF 166
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK---EVMVDDRLVTMQIWD 63
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|223649382|gb|ACN11449.1| Ras-related protein Rab-7a [Salmo salar]
Length = 205
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 105/195 (53%), Gaps = 9/195 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV---MVDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTAPNTFKTLDSWRDEFLIQASPRDPDNFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL +RQV +A C + + + E S+KE + ++ + + R + E E +
Sbjct: 128 DLENRQVTTKRAQAWCASKSSIPYFETSAKEAINVDQAFQTIA-RNALKQESEVETYDFP 186
Query: 423 SSIRLSEETLRDDQP 437
I+ LRDD+P
Sbjct: 187 DQIK-----LRDDRP 196
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV---MVDDRLVTMQIWD 63
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|170058469|ref|XP_001864935.1| ras-related protein Rab [Culex quinquefasciatus]
gi|167877567|gb|EDS40950.1| ras-related protein Rab [Culex quinquefasciatus]
Length = 203
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 105/180 (58%), Gaps = 8/180 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +Y T+GVDF + + G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTVV---INGERVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+TN +SF +V +W +++S C + N +L+ +
Sbjct: 66 GQERFRTITNTYYRGTHGVIVVYDVTNGESFANVKRWLQEIESNCDVVNK-----VLVGN 120
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
K D P+R+V I E + + E S+K++L +E+ + ++++ K+ ++ V+
Sbjct: 121 KNDDPNRKVVITEDSDRFAKQMDIQLFETSAKDNLNVEEMFLAITEQVLRHKKQTQKQVQ 180
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F +Y T+GVDF + + G VKLQIWD
Sbjct: 9 FKLLIIGDSGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTVV---INGERVKLQIWD 63
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS VGK+S + F N F +Y T+GVDF +
Sbjct: 8 LFKLLIIGDSGVGKSSLLIRFSDNTFSGSYITTIGVDFKIR 48
>gi|403268268|ref|XP_003926200.1| PREDICTED: ras-related protein Rab-43 [Saimiri boliviensis
boliviensis]
Length = 212
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 97/162 (59%), Gaps = 8/162 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGTFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWDTA 75
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D+T R SF SV W D+ G+ + LL+ +
Sbjct: 76 GQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIGDVRKYA----GSNIVQLLIGN 131
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL + R+V E + + Y+ + IE S+K+ +E++
Sbjct: 132 KSDLSELREVSQAEAQRLAEHYDILCAIETSAKDSSNVEEAF 173
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGTFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWD 73
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K++++GD++VGKT VQ F F + +T+GVDF+ K L
Sbjct: 18 LFKLVLVGDASVGKTCVVQRFKTGTFSERQGSTIGVDFTMKTL 60
>gi|66508944|ref|XP_624576.1| PREDICTED: ras-related protein Rab-43 [Apis mellifera]
Length = 219
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 102/173 (58%), Gaps = 15/173 (8%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK--LLSHKKYGGRPVKLQIWD 298
+ I++ GD GKT VQ F F++ + NT+GVDFS K L+ KK VKLQIWD
Sbjct: 21 FKIVLIGDCGTGKTCVVQRFRSGTFIERHGNTIGVDFSMKTILIDDKK-----VKLQIWD 75
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
AGQ+R+ +++ YY++++G I+++D+T R +F S+ W ++ + + +L+
Sbjct: 76 TAGQERFRTITQSYYRSANGVIVVYDITKRSTFLSLQHWVEEVRRY----TSSHVLLILI 131
Query: 359 ASKCDLPD-RQVEINEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+KCDL + R+VE E EA+C QY + +E S+KE+ I+ +L +
Sbjct: 132 GNKCDLENLREVEKGEAEALC-QYLPEVLQVVETSAKENTNIDSIFFYLASEL 183
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 7/60 (11%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK--LLSHKKYGGRPVKLQIWD 228
+ I++ GD GKT VQ F F++ + NT+GVDFS K L+ KK VKLQIWD
Sbjct: 21 FKIVLIGDCGTGKTCVVQRFRSGTFIERHGNTIGVDFSMKTILIDDKK-----VKLQIWD 75
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK--LLSHKK 154
+ KI++IGD GKT VQ F F++ + NT+GVDFS K L+ KK
Sbjct: 20 LFKIVLIGDCGTGKTCVVQRFRSGTFIERHGNTIGVDFSMKTILIDDKK 68
>gi|340373075|ref|XP_003385068.1| PREDICTED: ras-related protein Rab-32B-like isoform 1 [Amphimedon
queenslandica]
Length = 174
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 93/144 (64%), Gaps = 13/144 (9%)
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
+Q+WDIAG +R+ M+RVYY+ + II+FDLT + +F++V +W D+ K +L+N +
Sbjct: 1 MQLWDIAGHERFGHMTRVYYKYAIAAIIVFDLTRQPTFDAVQKWLDDVRQKVVLENDEPV 60
Query: 354 PCLLLASKCDLPD--RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
P LLLA+KCDL + QV+ ++++ C +N + W S+K++ IE++M+FL+++I+
Sbjct: 61 PVLLLANKCDLDNTTAQVDQSKLDQYCEDHNLIGWFPTSAKDNTNIEEAMSFLIEKIM-- 118
Query: 412 KRMEEEAVERKSSIRLSEETLRDD 435
+ SSI++ + T DD
Sbjct: 119 ---------QISSIQIRDSTPFDD 133
>gi|301765878|ref|XP_002918360.1| PREDICTED: ras-related protein Rab-3C-like [Ailuropoda melanoleuca]
Length = 219
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 110/193 (56%), Gaps = 10/193 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
KCD+ D +V E + + E S+K+++ ++ + LVD IIC K E++E
Sbjct: 136 KCDMEDERVISTERGRHLGEQLGFEFFETSAKDNINVKQTFERLVD-IICDKM--SESLE 192
Query: 421 RKSSIRLSEETLR 433
+I +++ R
Sbjct: 193 TDPAITAAKQNTR 205
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 77
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 64
>gi|291383947|ref|XP_002708544.1| PREDICTED: RAB39, member RAS oncogene family [Oryctolagus
cuniculus]
Length = 217
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 100/181 (55%), Gaps = 11/181 (6%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYG 288
+ I I + +++ GDSTVGK+ + F Q +F TVGVDF ++LL +
Sbjct: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP-- 58
Query: 289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD 348
G+ +KLQ+WD AGQ+R+ ++R YY+NS G ++FD+TNR+SFE V W L+ +
Sbjct: 59 GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDW---LEEAKMYV 115
Query: 349 NGAMLPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
+ LL+ KCDL RQV E E + M +IE S+K+ +E+S L
Sbjct: 116 QPFRIVFLLVGHKCDLASQRQVTREEAEKLSADCG-MKYIETSAKDATNVEESFTILTRD 174
Query: 408 I 408
I
Sbjct: 175 I 175
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
+ +++ GDSTVGK+ + F Q +F TVGVDF ++LL + G+ +KLQ+
Sbjct: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP--GKRIKLQL 66
Query: 227 WD 228
WD
Sbjct: 67 WD 68
>gi|340056350|emb|CCC50681.1| putative rab7 GTP binding protein [Trypanosoma vivax Y486]
Length = 211
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 19/164 (11%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I+I GDS VGKTS + +V KF + YK T+G DF TK L + G+ V LQIWD AGQ
Sbjct: 10 IIILGDSGVGKTSLMHQYVNKKFDNRYKATIGADFMTKEL---EVDGKSVTLQIWDTAGQ 66
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T ++SF V W + + C+L+ +K
Sbjct: 67 ERFQSLGSAFYRGADACVLVFDITQQESFSHVNSWLEEFRVQ-----AGKCNCVLIGNKS 121
Query: 363 DLPD-RQVEINEIEAVC----------HQYNFMSWIEVSSKEHL 395
DL D RQV E C Q + M + E S+K+++
Sbjct: 122 DLADRRQVSSRSAELWCESLKSDEEGGEQADSMQYFEASAKDNV 165
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
I+I GDS VGKTS + +V KF + YK T+G DF TK L + G+ V LQIWD
Sbjct: 10 IIILGDSGVGKTSLMHQYVNKKFDNRYKATIGADFMTKEL---EVDGKSVTLQIWD 62
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+LKI+++GDS VGKTS + +V KF + YK T+G DF TK L
Sbjct: 7 LLKIIILGDSGVGKTSLMHQYVNKKFDNRYKATIGADFMTKEL 49
>gi|167466099|dbj|BAG06944.1| WSDV receptor Rab7 [Marsupenaeus japonicus]
Length = 205
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 89/156 (57%), Gaps = 3/156 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGK S + FV KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKASLMNQFVNKKFSNQYKATIGADFLTKEV---MVDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T+ +F+S+ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTSPNTFKSLDSWRDEFLIQASPRDPDHFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398
DL +R V + CH N + + E S+KE + +E
Sbjct: 128 DLENRAVSTKRAQQWCHSKNEVPYFETSAKEAINVE 163
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGK S + FV KF + YK T+G DF TK
Sbjct: 3 SRKKILLKVIILGDSGVGKASLMNQFVNKKFSNQYKATIGADFLTK 48
>gi|24639106|ref|NP_726743.1| Rab27, isoform B [Drosophila melanogaster]
gi|4691239|emb|CAA19844.2| EG:80H7.4 [Drosophila melanogaster]
gi|7290172|gb|AAF45635.1| Rab27, isoform B [Drosophila melanogaster]
gi|313661533|gb|ADR71721.1| LP12150p [Drosophila melanogaster]
Length = 236
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 114/205 (55%), Gaps = 12/205 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDIAG 301
L+ GDS VGKT + + +F + +TVG+DF K L + G R + LQIWD AG
Sbjct: 20 FLVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFREKRLLYNSRGRRHRIHLQIWDTAG 79
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
Q+R+ ++ +Y+++ G +++FDLT+ KSF W L + ++ ++ C +K
Sbjct: 80 QERFRSLTTAFYRDAMGFLLIFDLTSEKSFLETANWLSQLRTHAYSEDPDVVLC---GNK 136
Query: 362 CDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
CDL R V +++ A+C +Y + +IE S+ +++++ LV R++ +R+E A
Sbjct: 137 CDLLQLRVVSRDQVAALCRRYR-LPYIETSACTGANVKEAVELLVGRVM--ERIENAACN 193
Query: 421 RKSSIRLSEE----TLRDDQPKKLV 441
R+ S+ L++ + QP+ LV
Sbjct: 194 REFSLLLTQSRCLPNIAYGQPEDLV 218
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWD 228
L+ GDS VGKT + + +F + +TVG+DF K L + G R + LQIWD
Sbjct: 20 FLVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFREKRLLYNSRGRRHRIHLQIWD 76
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 99 EPRPSD-AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG 157
EP P A + + LV+GDS VGKT + + +F + +TVG+DF K L + G
Sbjct: 7 EPEPLQLAGSGEQFLVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFREKRLLYNSRGR 66
Query: 158 R 158
R
Sbjct: 67 R 67
>gi|300796820|ref|NP_001179759.1| ras-related protein Rab-39A [Bos taurus]
gi|426244473|ref|XP_004016046.1| PREDICTED: ras-related protein Rab-39A [Ovis aries]
Length = 217
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 100/181 (55%), Gaps = 11/181 (6%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYG 288
+ I I + +++ GDSTVGK+ + F Q +F TVGVDF ++LL +
Sbjct: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP-- 58
Query: 289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD 348
G+ +KLQ+WD AGQ+R+ ++R YY+NS G ++FD+TNR+SFE V W L+ +
Sbjct: 59 GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDW---LEEAKMHV 115
Query: 349 NGAMLPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
+ LL+ KCDL RQV E E + M +IE S+K+ +E+S L
Sbjct: 116 QPFQIVFLLVGHKCDLASQRQVTREEAEKLSADCG-MKYIETSAKDATNVEESFTILTRD 174
Query: 408 I 408
I
Sbjct: 175 I 175
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
+ +++ GDSTVGK+ + F Q +F TVGVDF ++LL + G+ +KLQ+
Sbjct: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP--GKRIKLQL 66
Query: 227 WD 228
WD
Sbjct: 67 WD 68
>gi|403358406|gb|EJY78849.1| RAS small GTpases RIC1/ypt1, putative [Oxytricha trifallax]
Length = 208
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 103/169 (60%), Gaps = 9/169 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+S VGK+S + F + F DN+ T+GVDF + + + G+ +KLQIWD A
Sbjct: 9 FKVLLIGNSGVGKSSLLLRFADDVFTDNFMPTIGVDFKIRTI---EVDGKTIKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+ +D+T+R+SF ++ W ++++ K DN + +L+ +
Sbjct: 66 GQERFKTITSSYYKGAHGIIVTYDITDRESFSAIENWMNEVE-KHASDN---ISRILVGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
K D+ D RQV +E + + YN + ++E S+K+ +E++ + I
Sbjct: 122 KSDMEDARQVSTDEGKELAEHYN-VRFLETSAKDCKNVEEAFTMMTREI 169
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ G+S VGK+S + F + F DN+ T+GVDF + + + G+ +KLQIWD
Sbjct: 9 FKVLLIGNSGVGKSSLLLRFADDVFTDNFMPTIGVDFKIRTI---EVDGKTIKLQIWD 63
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S VGK+S + F + F DN+ T+GVDF + +
Sbjct: 8 LFKVLLIGNSGVGKSSLLLRFADDVFTDNFMPTIGVDFKIRTI 50
>gi|194912495|ref|XP_001982517.1| GG12695 [Drosophila erecta]
gi|190648193|gb|EDV45486.1| GG12695 [Drosophila erecta]
Length = 234
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 115/205 (56%), Gaps = 12/205 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDIAG 301
L+ GDS VGKT + + +F + +TVG+DF K L + G R + LQIWD AG
Sbjct: 18 FLVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFREKRLLYNSRGRRHRIHLQIWDTAG 77
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
Q+R+ ++ +Y+++ G +++FDLT+ KSF W L + ++ ++ C +K
Sbjct: 78 QERFRSLTTAFYRDAMGFLLIFDLTSEKSFLETANWLSQLRTHAYSEDPDVVLC---GNK 134
Query: 362 CDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
CDL R V +++ A+C +Y + +IE S+ ++++++ LV R++ +R+E A
Sbjct: 135 CDLLQLRVVSRDQVTALCRRYR-LPYIETSACTGANVKEAVDMLVGRVM--ERIENAACN 191
Query: 421 RKSSIRLSEE----TLRDDQPKKLV 441
R+ S+ L++ + QP+ LV
Sbjct: 192 REFSLLLTQSRCLPNIAYGQPEDLV 216
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWD 228
L+ GDS VGKT + + +F + +TVG+DF K L + G R + LQIWD
Sbjct: 18 FLVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFREKRLLYNSRGRRHRIHLQIWD 74
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR 158
+ LV+GDS VGKT + + +F + +TVG+DF K L + G R
Sbjct: 17 QFLVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFREKRLLYNSRGRR 65
>gi|24649793|ref|NP_733043.1| RabX4 [Drosophila melanogaster]
gi|194909360|ref|XP_001981930.1| GG12316 [Drosophila erecta]
gi|195354706|ref|XP_002043837.1| GM17780 [Drosophila sechellia]
gi|195504660|ref|XP_002099174.1| GE10770 [Drosophila yakuba]
gi|195573609|ref|XP_002104784.1| GD18265 [Drosophila simulans]
gi|23172210|gb|AAF56345.2| RabX4 [Drosophila melanogaster]
gi|190656568|gb|EDV53800.1| GG12316 [Drosophila erecta]
gi|194129075|gb|EDW51118.1| GM17780 [Drosophila sechellia]
gi|194185275|gb|EDW98886.1| GE10770 [Drosophila yakuba]
gi|194200711|gb|EDX14287.1| GD18265 [Drosophila simulans]
Length = 213
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 98/173 (56%), Gaps = 10/173 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ TY +L+ GDS VGKT V + K+ D Y +T+G+DF KL++ G P+KLQIW
Sbjct: 6 VATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLIN---LDGVPIKLQIW 62
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+R+ ++ YY+ + G ++M+D+TN +S+ ++ W ++ D + +L
Sbjct: 63 DTAGQERFRTLTTAYYRGAMGILLMYDVTNLESYNNLSYWLRNIQENASPD----VVKVL 118
Query: 358 LASKCDLP--DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+KC+ R V+ E + ++ M + EVS K ++ IED+ L +I
Sbjct: 119 AGNKCECSATQRMVDKERGEKIAENFD-MPFFEVSCKSNINIEDAFLSLARKI 170
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+Y +L+ GDS VGKT V + K+ D Y +T+G+DF KL++ G P+KLQIWD
Sbjct: 7 ATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLIN---LDGVPIKLQIWD 63
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
D K+LV+GDS VGKT V + K+ D Y +T+G+DF KL++
Sbjct: 4 DFVATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLIN 51
>gi|289741111|gb|ADD19303.1| Rab-related protein 3 [Glossina morsitans morsitans]
Length = 219
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 123/209 (58%), Gaps = 30/209 (14%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD+ GKT V+ F F++ NT+GVDFS K ++ + G+ VKLQIWD A
Sbjct: 22 FKIVLIGDAGTGKTCIVERFKTGNFIERQGNTIGVDFSMKTINVE---GKLVKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQW----KHDLDSKCILDNGAMLPCL 356
GQ+R+ +++ YY++++G II++D+T R +F ++ +W +H S +L +
Sbjct: 79 GQERFRTITQSYYRSANGVIIVYDVTRRDTFANLQKWIEEVRHYTASNVML--------I 130
Query: 357 LLASKCDL-PDRQVEINEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
L+ +K DL +R+V+ +E + +C QY + IE S+KE+L ++D+ L + +R
Sbjct: 131 LVGNKSDLEEEREVDFDEAQQMC-QYIPEVLFVIETSAKENLNVDDAFVTLATEL--KRR 187
Query: 414 MEEEAVERKSSIRL--SEETLRDDQPKKL 440
++ +SIRL +EE ++ Q K L
Sbjct: 188 VD-------NSIRLDDNEEAIKLGQSKPL 209
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD+ GKT V+ F F++ NT+GVDFS K ++ + G+ VKLQIWD
Sbjct: 22 FKIVLIGDAGTGKTCIVERFKTGNFIERQGNTIGVDFSMKTINVE---GKLVKLQIWD 76
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P + + + KI++IGD+ GKT V+ F F++ NT+GVDFS K ++
Sbjct: 13 PAEENFDFLFKIVLIGDAGTGKTCIVERFKTGNFIERQGNTIGVDFSMKTIN 64
>gi|334322507|ref|XP_003340260.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-13-like
[Monodelphis domestica]
Length = 201
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 101/171 (59%), Gaps = 11/171 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F ++ F Y +T+G+DF + + G+ +KLQ+WD A
Sbjct: 9 FKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVD---IXGKKIKLQVWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNG-AMLPCLLLA 359
GQ+R+ ++ YY+ + G I+++D+T+ KSFE++ W K I +N A + LLL
Sbjct: 66 GQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNW-----MKSIKENASAGVERLLLG 120
Query: 360 SKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+KCD+ R+V+ + E + ++ + + E S+K L ++++ N L I+
Sbjct: 121 NKCDMEVKRKVQKEQAEKLAREHG-IRFFETSAKSSLNVDEAFNSLARDIL 170
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F ++ F Y +T+G+DF + + G+ +KLQ+WD
Sbjct: 9 FKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVD---IXGKKIKLQVWD 63
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS VGKT + F ++ F Y +T+G+DF +
Sbjct: 8 LFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIR 48
>gi|405964683|gb|EKC30136.1| Ras-related protein Rab-3 [Crassostrea gigas]
Length = 219
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 101/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD A
Sbjct: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRQD---KRVKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V+ W + + DN + +L+ +
Sbjct: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFNAVMDWCTQIKTYS-WDNAQV---VLVGN 134
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCDL D +V E + + E S+KE++ ++ LVD IIC K E
Sbjct: 135 KCDLEDERVVSTERGKQLADQIGLEFFETSAKENINVKAVFERLVD-IICDKMSE 188
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD
Sbjct: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRQD---KRVKLQIWD 76
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 63
>gi|332030618|gb|EGI70306.1| Ras-related protein Rab-35 [Acromyrmex echinatior]
Length = 201
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 110/193 (56%), Gaps = 10/193 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFNGSYITTIGVDFKIQTV---EVDGERVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+ +F +V +W H+++ C + N +L+ +
Sbjct: 66 GQERFRTITSTYYRGTHGVIVVYDVTSGDTFANVKRWLHEIEQNCDVVNR-----VLVGN 120
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK--RMEEEA 418
K D P+++V + E + E S+K+++ +E+ + +++ +K R E +A
Sbjct: 121 KNDAPNQKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITRQVLRTKKERKERQA 180
Query: 419 VERKSSIRLSEET 431
++ ++ L + T
Sbjct: 181 IQTNETVNLRKST 193
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD-- 228
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFNGSYITTIGVDFKIQTV---EVDGERVKLQIWDTA 65
Query: 229 ----IYCTLSPIQIPTYPILITGDSTVGKT 254
S T+ +++ D T G T
Sbjct: 66 GQERFRTITSTYYRGTHGVIVVYDVTSGDT 95
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
+ K+L+IGDS VGK+S + F N F +Y T+GVDF
Sbjct: 8 LFKLLIIGDSGVGKSSLLLRFADNTFNGSYITTIGVDF 45
>gi|38051907|gb|AAH60562.1| Rab3b protein [Rattus norvegicus]
Length = 228
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 113/210 (53%), Gaps = 20/210 (9%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H+K VKLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK----RVKLQIWDT 78
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+
Sbjct: 79 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQV---ILVG 134
Query: 360 SKCDLPDRQV---EINEIEA------VCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
+KCD+ + +V E + A H Y + + E S+KE++ + + LVD IC
Sbjct: 135 NKCDMEEERVIPTEKGRLLAEQLGMHTAHTYTWFDFFEASAKENISVRQAFERLVD-AIC 193
Query: 411 SKRMEEEAVERKSSIRLSEETLRDDQPKKL 440
K M + S + S+ T D P L
Sbjct: 194 DK-MSDSMDTDPSVLGASKTTRLSDTPPLL 222
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 5/59 (8%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H+K VKLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK----RVKLQIWD 77
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKK 154
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K + H+K
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK 69
>gi|154422751|ref|XP_001584387.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121918634|gb|EAY23401.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 190
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 101/183 (55%), Gaps = 8/183 (4%)
Query: 247 GDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI 306
GDS+VGKT+ + FV N+F +++K T+G DF +K ++ G + LQIWD AG++R+
Sbjct: 2 GDSSVGKTTLIHSFVNNEFCEDFKATIGADFFSKTVT---VDGTTIDLQIWDTAGEERFH 58
Query: 307 CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366
+ +Y+ +D C++++D+T +F+ V W DL +K + N P +L +K DL D
Sbjct: 59 SVGVAFYRGTDACLLVYDITQIDTFKRVGVWLDDLLNKAGITNPDAFPIMLFGNKIDLAD 118
Query: 367 -RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERKSSI 425
RQV E + S+ EVS+K +ED ++ + + + + AV+
Sbjct: 119 QRQVPTEEARQWANSKR-CSFFEVSAKTQENVEDGFTEVLRKFL---QNHDRAVQTSPGF 174
Query: 426 RLS 428
++S
Sbjct: 175 KIS 177
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 29/38 (76%)
Query: 114 IGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+GDS+VGKT+ + FV N+F +++K T+G DF +K ++
Sbjct: 1 MGDSSVGKTTLIHSFVNNEFCEDFKATIGADFFSKTVT 38
>gi|57525915|ref|NP_001003548.1| ras-related protein Rab-35 [Danio rerio]
gi|50418486|gb|AAH77124.1| RAB35, member RAS oncogene family [Danio rerio]
Length = 201
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 106/174 (60%), Gaps = 10/174 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---ELNGEKVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+T+ +SF +V +W H+++ C D+ + +L+ +
Sbjct: 66 GQERFRTITSTYYRGTHGVVVVYDVTSAESFVNVKRWLHEINQNC--DD---VCRILVGN 120
Query: 361 KCDLPDRQ-VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K D P+ + VE N+ + Q +S E S+KE++ +E+ N + + ++ +K+
Sbjct: 121 KNDDPNSKVVETNDAQKFAEQMG-ISLFETSAKENVNVEEMFNCITELVLRAKK 173
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---ELNGEKVKLQIWD 63
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
D + + K+L+IGDS VGK+S + F N F +Y T+GVDF +
Sbjct: 4 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIR 48
>gi|195113497|ref|XP_002001304.1| GI10714 [Drosophila mojavensis]
gi|193917898|gb|EDW16765.1| GI10714 [Drosophila mojavensis]
Length = 213
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 99/173 (57%), Gaps = 10/173 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ TY +L+ GDS VGKT V + K+ D Y +T+G+DF KL++ G P+KLQIW
Sbjct: 6 VATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLIN---LDGVPIKLQIW 62
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+R+ ++ YY+ + G ++M+D+TN +S+ ++ W ++ D + +L
Sbjct: 63 DTAGQERFRTLTTAYYRGAMGILLMYDVTNLESYNNLSYWLRNIQENASPD----VVKVL 118
Query: 358 LASKCDLP--DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+KC+ R V+ + E + ++ M + EVS K ++ IED+ L +I
Sbjct: 119 AGNKCECSTTQRMVDKDRGEKIAENFD-MPFFEVSCKSNINIEDAFLSLARKI 170
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+Y +L+ GDS VGKT V + K+ D Y +T+G+DF KL++ G P+KLQIWD
Sbjct: 7 ATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLIN---LDGVPIKLQIWD 63
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
D K+LV+GDS VGKT V + K+ D Y +T+G+DF KL++
Sbjct: 4 DFVATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLIN 51
>gi|194745947|ref|XP_001955446.1| GF18770 [Drosophila ananassae]
gi|190628483|gb|EDV44007.1| GF18770 [Drosophila ananassae]
Length = 213
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 98/173 (56%), Gaps = 10/173 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ TY +L+ GDS VGKT V + K+ D Y +T+G+DF KL++ G P+KLQIW
Sbjct: 6 VATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLIN---LDGVPIKLQIW 62
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+R+ ++ YY+ + G ++M+D+TN +S+ ++ W ++ D + +L
Sbjct: 63 DTAGQERFRTLTTAYYRGAMGILLMYDVTNLESYNNLSYWLRNIQENASPD----VVKVL 118
Query: 358 LASKCDLP--DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+KC+ R V+ E + ++ M + EVS K ++ IED+ L +I
Sbjct: 119 AGNKCECSSTQRMVDKERGEKIAENFD-MPFFEVSCKSNINIEDAFLSLARKI 170
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+Y +L+ GDS VGKT V + K+ D Y +T+G+DF KL++ G P+KLQIWD
Sbjct: 7 ATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLIN---LDGVPIKLQIWD 63
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
D K+LV+GDS VGKT V + K+ D Y +T+G+DF KL++
Sbjct: 4 DFVATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLIN 51
>gi|253742611|gb|EES99410.1| Rab11 [Giardia intestinalis ATCC 50581]
Length = 216
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 94/170 (55%), Gaps = 5/170 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR-PVKLQIWDI 299
Y +++ GDS VGK++ + F NKF + T+GV+F+TK L+ + G +LQ WD
Sbjct: 9 YKLILIGDSAVGKSNILSRFTSNKFNASSAATIGVEFTTKTLTVEVQGKMISTRLQCWDT 68
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++ YY+ + GC+++FD+T R SFE +W +L + N +L+
Sbjct: 69 AGQERYRSITSSYYRGAHGCLLVFDVTKRTSFEHCTEWLTELRNASA--NSTACKVILVG 126
Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+K DL R+V E A Q +S+IE S+ I+D+ LV +
Sbjct: 127 NKVDLRHLREVTTEEATAFAQQQG-LSYIETSASSGHGIDDAFKRLVTEL 175
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR-PVKLQIWD 228
Y +++ GDS VGK++ + F NKF + T+GV+F+TK L+ + G +LQ WD
Sbjct: 9 YKLILIGDSAVGKSNILSRFTSNKFNASSAATIGVEFTTKTLTVEVQGKMISTRLQCWD 67
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
K+++IGDS VGK++ + F NKF + T+GV+F+TK L+
Sbjct: 10 KLILIGDSAVGKSNILSRFTSNKFNASSAATIGVEFTTKTLT 51
>gi|340508208|gb|EGR33965.1| hypothetical protein IMG5_029320 [Ichthyophthirius multifiliis]
Length = 225
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 93/155 (60%), Gaps = 8/155 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKTS++ F +++F N +VG+DF + L + +KL+IWD A
Sbjct: 22 FQIVLIGDSGVGKTSFLIRFSEDQFFKNVNTSVGIDFRYRSLI---IDNKQIKLKIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+ Y +S+ Y+Q +D ++MFD+TN +SF ++ W +L+ C N +P +L+A
Sbjct: 79 GQENYRAISKRYFQKADAVVLMFDITNNESFGNLSYWLEELNQNCKDTN---IPKILVAH 135
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEH 394
K DL R V EI+ + N M +IE S+KE+
Sbjct: 136 KGDLNSKRTVHFEEIDDFVIENN-MEFIEASAKEN 169
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKTS++ F +++F N +VG+DF + L + +KL+IWD
Sbjct: 22 FQIVLIGDSGVGKTSFLIRFSEDQFFKNVNTSVGIDFRYRSLI---IDNKQIKLKIWD 76
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 15/93 (16%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK--LLSHKKY--------GGR 158
+I++IGDS VGKTS++ F +++F N +VG+DF + ++ +K+ G
Sbjct: 22 FQIVLIGDSGVGKTSFLIRFSEDQFFKNVNTSVGIDFRYRSLIIDNKQIKLKIWDTAGQE 81
Query: 159 PYGTFSP--IQTPSYLIL---ITGDSTVGKTSY 186
Y S Q ++L IT + + G SY
Sbjct: 82 NYRAISKRYFQKADAVVLMFDITNNESFGNLSY 114
>gi|398013821|ref|XP_003860102.1| rab7 GTP binding protein, putative [Leishmania donovani]
gi|322498321|emb|CBZ33395.1| rab7 GTP binding protein, putative [Leishmania donovani]
Length = 223
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 105/208 (50%), Gaps = 29/208 (13%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I+I GDS VGKTS + +V + F + YK T+G DF +K + + GR V LQIWD AGQ
Sbjct: 10 IIILGDSGVGKTSLMHQYVNHIFDNRYKATIGADFLSKDV---EVNGRVVTLQIWDTAGQ 66
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D CI++FD+T ++SF V W + + +L+ +K
Sbjct: 67 ERFQSLGSAFYRGADACILVFDVTQQESFAHVGSWLEEFSIQ-----AGRRDSVLVGNKT 121
Query: 363 DLPD-RQVEINEIEAVCHQYNF--------------------MSWIEVSSKEHLMIEDSM 401
DL D RQV ++A C + N M + E S+K++ +E++
Sbjct: 122 DLEDRRQVASKTVQAWCAKQNAEAANVNNGAGAGAGDSAAPEMKYFETSAKDNAGVEEAF 181
Query: 402 NFLVDRIICSKRMEEEAVERKSSIRLSE 429
+V + K EEA ++ LS+
Sbjct: 182 IAVVQLALARKATVEEATPMPQTVNLSQ 209
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
I+I GDS VGKTS + +V + F + YK T+G DF +K + + GR V LQIWD
Sbjct: 10 IIILGDSGVGKTSLMHQYVNHIFDNRYKATIGADFLSKDV---EVNGRVVTLQIWD 62
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+LKI+++GDS VGKTS + +V + F + YK T+G DF +K
Sbjct: 7 LLKIIILGDSGVGKTSLMHQYVNHIFDNRYKATIGADFLSK 47
>gi|443685362|gb|ELT88996.1| hypothetical protein CAPTEDRAFT_149846 [Capitella teleta]
Length = 218
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 104/176 (59%), Gaps = 10/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD A
Sbjct: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRQD---KRVKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF++V W + + DN + +L+ +
Sbjct: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFQAVQDWCTQIKTYS-WDNAQV---VLVGN 134
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCDL D R V + + + Q + + E S+KE++ ++ LVD IIC K E
Sbjct: 135 KCDLEDERVVSFDRGKQLAEQLG-LEFFETSAKENINVKAVFERLVD-IICDKMSE 188
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD
Sbjct: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRQD---KRVKLQIWD 76
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 63
>gi|346467979|gb|AEO33834.1| hypothetical protein [Amblyomma maculatum]
Length = 204
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 99/188 (52%), Gaps = 3/188 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I G+S VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGESGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T SF+++ W+ + + + P +++ +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTVPGSFKALXXWRDEFLIQASPRDPENFPFVVIGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL +R V + C N + + E S+KE L +E + + + + E E
Sbjct: 128 DLDNRGVSTKRAQGWCQSKNGIPYFETSAKEALNVEQAFQTVAKNALAQETEVELYNEFP 187
Query: 423 SSIRLSEE 430
I+L+ E
Sbjct: 188 DQIKLTNE 195
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I G+S VGKTS + +V KF + YK T+G DF TK R V +QIWD
Sbjct: 11 VIILGESGVGKTSLMNQYVNKKFSNQYKATIGADFLTK---EVMVDDRLVTMQIWD 63
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++G+S VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGESGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|209155660|gb|ACI34062.1| Ras-related protein Rab-7a [Salmo salar]
Length = 205
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 102/188 (54%), Gaps = 4/188 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V +F + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKRFSNQYKATIGADFLTKEV---MVDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTAPNTFKTLDSWRDEFLIQASPRDPDNFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL +RQV +A C N + + E S+KE + ++ + + R + E E +
Sbjct: 128 DLENRQVTTKRAQAWCASKNNIPYFETSAKEAINVDQAFQTIA-RNALKQESEVETYDFP 186
Query: 423 SSIRLSEE 430
I+L +E
Sbjct: 187 DQIKLRDE 194
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V +F + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKRFSNQYKATIGADFLTKEV---MVDDRLVTMQIWD 63
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V +F + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKRFSNQYKATIGADFLTK 48
>gi|410971851|ref|XP_003992376.1| PREDICTED: ras-related protein Rab-39A [Felis catus]
Length = 217
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 100/181 (55%), Gaps = 11/181 (6%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYG 288
+ I I + +++ GDSTVGK+ + F Q +F TVGVDF ++LL +
Sbjct: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP-- 58
Query: 289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD 348
G+ +KLQ+WD AGQ+R+ ++R YY+NS G ++FD+TNR+SFE V W L+ +
Sbjct: 59 GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDW---LEEAKMHV 115
Query: 349 NGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
+ LL+ KCDL RQV E E + M +IE S+K+ +E+S L
Sbjct: 116 QPFRIVFLLVGHKCDLASRRQVTREEAEKLSADCG-MKYIETSAKDATNVEESFTILTRD 174
Query: 408 I 408
I
Sbjct: 175 I 175
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
+ +++ GDSTVGK+ + F Q +F TVGVDF ++LL + G+ +KLQ+
Sbjct: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP--GKRIKLQL 66
Query: 227 WD 228
WD
Sbjct: 67 WD 68
>gi|270013222|gb|EFA09670.1| hypothetical protein TcasGA2_TC011797 [Tribolium castaneum]
Length = 366
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 147/303 (48%), Gaps = 45/303 (14%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLD-NYKNTVGVDFSTKLLSHKKYGGRPYGTFS 164
+ V K +++GDS VGKTS + F +F N+ TVG+ F+ GR FS
Sbjct: 55 QIVHKTILLGDSGVGKTSLLVKFDTGRFQSGNFSATVGIGFTVS--------GRKMARFS 106
Query: 165 PIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG--GRPV 222
T+ + +K NY+ V V + KL +++ G P
Sbjct: 107 --------------KTIAADKW-----GDKAPANYRRVVRVKSTKKLAENERRNSQGGPG 147
Query: 223 KLQIWDIYCTLSPIQI-PTYP----ILITGDSTVGKTSYVQGFVQNKFLD-NYKNTVGVD 276
L + + ++ TY +++ GDS VGKT + F FL NY +TVG+D
Sbjct: 148 PLLEYSFFSRRESLKSDETYELFAKVMLLGDSGVGKTCILMQFRDGLFLSGNYISTVGID 207
Query: 277 FSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ 336
F K+++ + VKLQIWD AGQ+R+ ++ YY+++ ++++D+TN+ SF+++
Sbjct: 208 FRNKVVTVDQT---KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTSFDNIRA 264
Query: 337 WKHDLDSKCILDNGAMLPCLLLASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHL 395
W ++ D + +LL +K D DR V + E + +YN ++++E S+K
Sbjct: 265 WLSEIREYAQDD----VVIMLLGNKADCGGDRAVRREDGERLAREYN-VAFMETSAKSGQ 319
Query: 396 MIE 398
+E
Sbjct: 320 NVE 322
>gi|184186121|ref|NP_001116983.1| rab7 GTPase homolog SUrab7 [Strongylocentrotus purpuratus]
Length = 205
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 101/188 (53%), Gaps = 3/188 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV---MVDDRFVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T+ SF+S+ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTSPNSFKSLDSWRDEFLIQASPRDPEHFPFVVLGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL +R V ++ C N + + E S+KE + +E + + + + + +
Sbjct: 128 DLDNRIVSAKRSQSWCDSKNSIPYFETSAKESINVEQAFQTIAKNALAQEPDDSTYQDFP 187
Query: 423 SSIRLSEE 430
S I+L +
Sbjct: 188 SQIKLDND 195
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV---MVDDRFVTMQIWD 63
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|403262879|ref|XP_003923794.1| PREDICTED: ras-related protein Rab-39A [Saimiri boliviensis
boliviensis]
Length = 217
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 100/181 (55%), Gaps = 11/181 (6%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYG 288
+ I I + +++ GDSTVGK+ + F Q +F TVGVDF ++LL +
Sbjct: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP-- 58
Query: 289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD 348
G+ +KLQ+WD AGQ+R+ ++R YY+NS G ++FD+TNR+SFE V W L+ +
Sbjct: 59 GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDW---LEEAKMHV 115
Query: 349 NGAMLPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
+ LL+ KCDL RQV E E + M +IE S+K+ +E+S L
Sbjct: 116 QPFRIVFLLVGHKCDLASQRQVTREEAEKLSADCG-MKYIETSAKDATNVEESFTILTRD 174
Query: 408 I 408
I
Sbjct: 175 I 175
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
+ +++ GDSTVGK+ + F Q +F TVGVDF ++LL + G+ +KLQ+
Sbjct: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP--GKRIKLQL 66
Query: 227 WD 228
WD
Sbjct: 67 WD 68
>gi|126315213|ref|XP_001366023.1| PREDICTED: ras-related protein Rab-3C-like [Monodelphis domestica]
Length = 219
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 109/193 (56%), Gaps = 10/193 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
KCD+ D +V E + + E S+K+++ ++ + LVD IIC K E++E
Sbjct: 136 KCDMEDERVISTERGKHLGEQLGFEFFETSAKDNINVKQTFERLVD-IICDKM--SESLE 192
Query: 421 RKSSIRLSEETLR 433
+I ++ R
Sbjct: 193 TDPAIAAGKQNTR 205
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 77
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 64
>gi|195427457|ref|XP_002061793.1| GK17190 [Drosophila willistoni]
gi|194157878|gb|EDW72779.1| GK17190 [Drosophila willistoni]
Length = 219
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 103/171 (60%), Gaps = 11/171 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD GKT V+ F F++ + NT+GVDFS K ++ + G+ VKLQIWD A
Sbjct: 22 FKIVLIGDCGTGKTCIVERFKTGNFVERHGNTIGVDFSMKTIAVE---GKQVKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G +I++D+T R SF ++ +W ++ + + +L+ +
Sbjct: 79 GQERFRTITQSYYRSANGVLIVYDITKRSSFSNLQKWIEEVRRY----TASNVLIILIGN 134
Query: 361 KCDL-PDRQVEINEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDRI 408
KCDL +R+V+ E +C QY + +E S+K ++ +ED+ L +
Sbjct: 135 KCDLDEEREVDFEEARQMC-QYIPEILFVMETSAKSNMNVEDAFRCLATEL 184
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD GKT V+ F F++ + NT+GVDFS K ++ + G+ VKLQIWD
Sbjct: 22 FKIVLIGDCGTGKTCIVERFKTGNFVERHGNTIGVDFSMKTIAVE---GKQVKLQIWD 76
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P + + + KI++IGD GKT V+ F F++ + NT+GVDFS K ++
Sbjct: 13 PNEENFDFLFKIVLIGDCGTGKTCIVERFKTGNFVERHGNTIGVDFSMKTIA 64
>gi|148298847|ref|NP_001091822.1| small GTP-binding protein Rab10 [Bombyx mori]
gi|111608111|gb|ABH10799.1| small GTP-binding protein Rab10 [Bombyx mori]
Length = 203
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 104/170 (61%), Gaps = 9/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F N F + +T+G+DF K + + G+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELR---GKKIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN K+F+ +V+W ++D D + ++L +
Sbjct: 67 GQERFHTITTSYYRGAMGIMLVYDITNEKTFDDIVKWLRNIDEHANED----VEKMILGN 122
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCD+ +++V E EA+ ++ + ++E S+K ++ I+ + + L + I+
Sbjct: 123 KCDMEEKRVVSKERGEAIAREHG-IRFMETSAKANINIDRAFSELAEAIL 171
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F N F + +T+G+DF K + + G+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELR---GKKIKLQIWD 64
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS VGKT + F N F + +T+G+DF K
Sbjct: 9 LFKLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIK 49
>gi|343418356|emb|CCD19762.1| small GTPase, putative [Trypanosoma vivax Y486]
Length = 200
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 85/132 (64%), Gaps = 8/132 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ G+S GK+S + FV++ F ++ T+GV+F +K++ + GG VKLQIWD AGQ
Sbjct: 11 LIVVGESATGKSSLLHRFVEDAFSEDQAQTIGVEFGSKIV---ELGGEKVKLQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+RY ++R YY+ + GC+I++D++ R S+ES+ QW +D+ G + +L+ +K
Sbjct: 68 ERYKSVTRSYYRGAVGCLIVYDISQRSSYESIPQWLNDVRQLA----GKDVVVMLVGNKA 123
Query: 363 DLPD-RQVEINE 373
DL D R V NE
Sbjct: 124 DLSDGRAVTHNE 135
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ G+S GK+S + FV++ F ++ T+GV+F +K++ + GG VKLQIWD
Sbjct: 11 LIVVGESATGKSSLLHRFVEDAFSEDQAQTIGVEFGSKIV---ELGGEKVKLQIWD 63
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 33/45 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ ++K++V+G+S GK+S + FV++ F ++ T+GV+F +K++
Sbjct: 6 QQLMKLIVVGESATGKSSLLHRFVEDAFSEDQAQTIGVEFGSKIV 50
>gi|307176976|gb|EFN66282.1| Ras-related protein Rab-35 [Camponotus floridanus]
Length = 201
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 110/193 (56%), Gaps = 10/193 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFNGSYITTIGVDFKIQTV---EIDGERVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+ +F +V +W H+++ C + N +L+ +
Sbjct: 66 GQERFRTITSTYYRGTHGVIVVYDVTSGDTFANVKRWLHEIEQNCDVVNR-----VLVGN 120
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK--RMEEEA 418
K D P+++V + E + E S+K+++ +E+ + +++ +K R E +A
Sbjct: 121 KNDAPNQKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITRQVLRTKKERKERQA 180
Query: 419 VERKSSIRLSEET 431
++ ++ L + T
Sbjct: 181 IQTNETVNLRKST 193
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD-- 228
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFNGSYITTIGVDFKIQTV---EIDGERVKLQIWDTA 65
Query: 229 ----IYCTLSPIQIPTYPILITGDSTVGKT 254
S T+ +++ D T G T
Sbjct: 66 GQERFRTITSTYYRGTHGVIVVYDVTSGDT 95
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
+ K+L+IGDS VGK+S + F N F +Y T+GVDF
Sbjct: 8 LFKLLIIGDSGVGKSSLLLRFADNTFNGSYITTIGVDF 45
>gi|167382616|ref|XP_001736187.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165901348|gb|EDR27431.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 203
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 99/171 (57%), Gaps = 9/171 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI GDS VGKT+ +Q + N F + Y +T+GVDF +L+ G R VKLQIWD A
Sbjct: 10 FKILIVGDSGVGKTAILQRYCNNTFDERYVSTIGVDFKPMILN---LGERTVKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R++ ++ Y++N+ II++D+ NR+S V W +++ K N P + L
Sbjct: 67 GQERFMNITAAYFRNTTAVIIVYDVNNRESLSKVYSWYGEVNEKTTQPN----PVIFLVG 122
Query: 361 --KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
K + D + I E +++ + + +E S+K+++ I++ LVD I+
Sbjct: 123 NKKDENSDSLINIEEAKSIASKLGNIKVMECSAKDNIGIKELFGSLVDTIL 173
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI GDS VGKT+ +Q + N F + Y +T+GVDF +L+ G R VKLQIWD
Sbjct: 10 FKILIVGDSGVGKTAILQRYCNNTFDERYVSTIGVDFKPMILN---LGERTVKLQIWD 64
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ KIL++GDS VGKT+ +Q + N F + Y +T+GVDF +L+
Sbjct: 9 LFKILIVGDSGVGKTAILQRYCNNTFDERYVSTIGVDFKPMILN 52
>gi|156383574|ref|XP_001632908.1| predicted protein [Nematostella vectensis]
gi|156219971|gb|EDO40845.1| predicted protein [Nematostella vectensis]
Length = 184
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 107/181 (59%), Gaps = 14/181 (7%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F N F ++ +T+G+DF K L + GG+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKTCIIFRFADNTFNPSFISTIGIDFKIKTL---ELGGKKIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSF ++ +W +D D + +L+ +
Sbjct: 67 GQERFHTITTAYYRGAMGIMLVYDVTNEKSFSNISKWLKKIDDHANED----VKRMLVGN 122
Query: 361 KCDLPDRQVEINEI--EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI---ICSKRME 415
KCD+ D++V I++ E + Y +S+IE S+ ++ +E S L + I +C +E
Sbjct: 123 KCDMYDKRV-ISQTKGEQLASSYG-ISFIETSALSNINVEKSFVVLTEDILNAVCPPTVE 180
Query: 416 E 416
E
Sbjct: 181 E 181
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F N F ++ +T+G+DF K L + GG+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKTCIIFRFADNTFNPSFISTIGIDFKIKTL---ELGGKKIKLQIWD 64
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR 158
++ K+L+IGDS VGKT + F N F ++ +T+G+DF K L + GG+
Sbjct: 6 SDLFFKLLLIGDSGVGKTCIIFRFADNTFNPSFISTIGIDFKIKTL---ELGGK 56
>gi|296216096|ref|XP_002754410.1| PREDICTED: ras-related protein Rab-39A [Callithrix jacchus]
Length = 217
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 100/181 (55%), Gaps = 11/181 (6%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYG 288
+ I I + +++ GDSTVGK+ + F Q +F TVGVDF ++LL +
Sbjct: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP-- 58
Query: 289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD 348
G+ +KLQ+WD AGQ+R+ ++R YY+NS G ++FD+TNR+SFE V W L+ +
Sbjct: 59 GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDW---LEEAKMHV 115
Query: 349 NGAMLPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
+ LL+ KCDL RQV E E + M +IE S+K+ +E+S L
Sbjct: 116 QPFRIVFLLVGHKCDLASQRQVTREEAEKLSADCG-MKYIETSAKDATNVEESFTILTRD 174
Query: 408 I 408
I
Sbjct: 175 I 175
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
+ +++ GDSTVGK+ + F Q +F TVGVDF ++LL + G+ +KLQ+
Sbjct: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP--GKRIKLQL 66
Query: 227 WD 228
WD
Sbjct: 67 WD 68
>gi|395510325|ref|XP_003759428.1| PREDICTED: ras-related protein Rab-3C [Sarcophilus harrisii]
Length = 227
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 112/194 (57%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 87
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 88 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 143
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D +V E + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 144 KCDMEDERVISTERGKHLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 199
Query: 420 ERKSSIRLSEETLR 433
E +I ++ R
Sbjct: 200 ETDPAIAAGKQNTR 213
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 85
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 72
>gi|297690125|ref|XP_002822477.1| PREDICTED: ras-related protein Rab-39A [Pongo abelii]
Length = 217
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 100/181 (55%), Gaps = 11/181 (6%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYG 288
+ I I + +++ GDSTVGK+ + F Q +F TVGVDF ++LL +
Sbjct: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP-- 58
Query: 289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD 348
G+ +KLQ+WD AGQ+R+ ++R YY+NS G ++FD+TNR+SFE V W L+ +
Sbjct: 59 GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDW---LEEAKMHV 115
Query: 349 NGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
+ LL+ KCDL RQV E E + M +IE S+K+ +E+S L
Sbjct: 116 QPFRIVFLLVGHKCDLASRRQVTREEAEKLSADCG-MKYIETSAKDATNVEESFTILTRD 174
Query: 408 I 408
I
Sbjct: 175 I 175
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
+ +++ GDSTVGK+ + F Q +F TVGVDF ++LL + G+ +KLQ+
Sbjct: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP--GKRIKLQL 66
Query: 227 WD 228
WD
Sbjct: 67 WD 68
>gi|297833530|ref|XP_002884647.1| hypothetical protein ARALYDRAFT_896904 [Arabidopsis lyrata subsp.
lyrata]
gi|297330487|gb|EFH60906.1| hypothetical protein ARALYDRAFT_896904 [Arabidopsis lyrata subsp.
lyrata]
Length = 217
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 101/170 (59%), Gaps = 9/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGK++ + F +++F N K T+GV+F T+L+ + G+ VK QIWD A
Sbjct: 13 FKIVLIGDSAVGKSNLLSRFSRDEFDTNSKATIGVEFQTQLVEIE---GKEVKAQIWDTA 69
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G +I++D+T +FESV +W +L++ C + +L+ +
Sbjct: 70 GQERFRAVTSAYYRGAFGALIVYDITRSDTFESVKRWLQELNTHC----DTAVAQMLVGN 125
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL D R V + E +A+ + ++E S+ + ++ + ++ I
Sbjct: 126 KCDLEDIRAVSVEEGKALAEEEGLF-FMETSALDATNVDKAFEIVIREIF 174
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 33/45 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KI++IGDS VGK++ + F +++F N K T+GV+F T+L+
Sbjct: 10 EYLFKIVLIGDSAVGKSNLLSRFSRDEFDTNSKATIGVEFQTQLV 54
>gi|159117346|ref|XP_001708893.1| Rab11 [Giardia lamblia ATCC 50803]
gi|28628539|gb|AAO49245.1|AF460175_1 GTPase Rab11-like protein [Giardia intestinalis]
gi|157437007|gb|EDO81219.1| Rab11 [Giardia lamblia ATCC 50803]
Length = 216
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 94/170 (55%), Gaps = 5/170 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR-PVKLQIWDI 299
Y +++ GDS VGK++ + F NKF + T+GV+F+TK L+ + G +LQ WD
Sbjct: 9 YKLILIGDSAVGKSNILSRFTSNKFNASSAATIGVEFTTKTLTVEVQGKMISTRLQCWDT 68
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++ YY+ + GC+++FD+T R SFE +W +L + N +L+
Sbjct: 69 AGQERYRSITSSYYRGAHGCLLVFDVTKRTSFEHCTEWLTELRNASA--NSTACKVILVG 126
Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+K DL R+V E A Q +S+IE S+ I+D+ LV +
Sbjct: 127 NKVDLRHLREVTTEEATAFAQQQG-LSYIETSASSGHGIDDAFKQLVTEL 175
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR-PVKLQIWD 228
Y +++ GDS VGK++ + F NKF + T+GV+F+TK L+ + G +LQ WD
Sbjct: 9 YKLILIGDSAVGKSNILSRFTSNKFNASSAATIGVEFTTKTLTVEVQGKMISTRLQCWD 67
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
K+++IGDS VGK++ + F NKF + T+GV+F+TK L+
Sbjct: 10 KLILIGDSAVGKSNILSRFTSNKFNASSAATIGVEFTTKTLT 51
>gi|241752313|ref|XP_002401040.1| RAB-9 and, putative [Ixodes scapularis]
gi|215508295|gb|EEC17749.1| RAB-9 and, putative [Ixodes scapularis]
gi|442759143|gb|JAA71730.1| Hypothetical protein [Ixodes ricinus]
Length = 204
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 100/188 (53%), Gaps = 3/188 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I G+S VGKTS + +V KF + YK T+G DF TK + + R V +QIWD AGQ
Sbjct: 11 VIILGESGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVED---RLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T SF+++ W+ + + + P +++ +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTVPASFKALESWRDEFLIQASPRDPENFPFVVIGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL +R V + C N + + E S+KE L +E + + + + E E
Sbjct: 128 DLDNRGVSTKRAQGWCQSKNGIPYFETSAKEALNVEQAFQTVAKNALAQETEVELYNEFP 187
Query: 423 SSIRLSEE 430
I+L+ E
Sbjct: 188 DQIKLTGE 195
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I G+S VGKTS + +V KF + YK T+G DF TK + + R V +QIWD
Sbjct: 11 VIILGESGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVED---RLVTMQIWD 63
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++G+S VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGESGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|74145385|dbj|BAE36145.1| unnamed protein product [Mus musculus]
Length = 225
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 111/194 (57%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 29 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 85
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN + F +V W + + DN + +L +
Sbjct: 86 GQERYRTITTAYYRGAMGFILMYDITNEEPFNAVQDWSTQIKTYS-WDNAQV---ILAGN 141
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D R V + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 142 KCDMEDERVVSTERGQRLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 197
Query: 420 ERKSSIRLSEETLR 433
E +I ++++ R
Sbjct: 198 ETDPAITAAKQSTR 211
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 29 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 83
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 28 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 70
>gi|311263847|ref|XP_003129872.1| PREDICTED: ras-related protein Rab-39A-like [Sus scrofa]
Length = 217
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 100/181 (55%), Gaps = 11/181 (6%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYG 288
+ I I + +++ GDSTVGK+ + F Q +F TVGVDF ++LL +
Sbjct: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP-- 58
Query: 289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD 348
G+ +KLQ+WD AGQ+R+ ++R YY+NS G ++FD+TNR+SFE V W L+ +
Sbjct: 59 GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDW---LEEAKMHV 115
Query: 349 NGAMLPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
+ LL+ KCDL RQV E E + M +IE S+K+ +E+S L
Sbjct: 116 QPFRIVFLLVGHKCDLASQRQVTREEAERLSADCG-MKYIETSAKDATNVEESFTILTRD 174
Query: 408 I 408
I
Sbjct: 175 I 175
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
+ +++ GDSTVGK+ + F Q +F TVGVDF ++LL + G+ +KLQ+
Sbjct: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP--GKRIKLQL 66
Query: 227 WD 228
WD
Sbjct: 67 WD 68
>gi|320582172|gb|EFW96390.1| GTP-binding protein [Ogataea parapolymorpha DL-1]
Length = 206
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 102/180 (56%), Gaps = 9/180 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS +Q F+ KF YK T+G DF K L + V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMQQFINGKFSQQYKATIGADFLPKDLV---IDDKQVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ SD C++++D+TN KSFE++ WK + + + + P +++ +K
Sbjct: 68 ERFQSLGVAFYRGSDCCVLVYDVTNTKSFENLQSWKDEFLIQANIKDPDNFPFVVIGNKI 127
Query: 363 DLPD--RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
D+ + R V + +++C + + E S+KE + +E + D + + +EE++E
Sbjct: 128 DVEENKRLVSSKKAQSLCASMGNLPYFETSAKEAVNVEQAF----DVVARNALQQEESLE 183
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+T+LK++++GDS VGKTS +Q F+ KF YK T+G DF K L
Sbjct: 6 KTILKVIILGDSGVGKTSLMQQFINGKFSQQYKATIGADFLPKDL 50
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS +Q F+ KF YK T+G DF K L + V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMQQFINGKFSQQYKATIGADFLPKDLV---IDDKQVTMQIWD 63
>gi|432853436|ref|XP_004067706.1| PREDICTED: ras-related protein Rab-3B-like [Oryzias latipes]
Length = 217
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 106/181 (58%), Gaps = 10/181 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F +++ +TVG+DF K + + +KLQIWD A
Sbjct: 22 FKLLIIGNSSVGKTSFLFRYADDSFSNSFVSTVGIDFKVKTVYR---NDKRIKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +++ +
Sbjct: 79 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQV---IMVGN 134
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ +R V + + + + Q F + E S+KE++ + LVD IIC K E V
Sbjct: 135 KCDMEEERIVPLEKGKHLADQLGF-EYYEASAKENINVRQVFERLVD-IICVKMSERVDV 192
Query: 420 E 420
E
Sbjct: 193 E 193
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F +++ +TVG+DF K + + +KLQIWD
Sbjct: 22 FKLLIIGNSSVGKTSFLFRYADDSFSNSFVSTVGIDFKVKTVYR---NDKRIKLQIWD 76
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 32/43 (74%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F +++ +TVG+DF K +
Sbjct: 21 MFKLLIIGNSSVGKTSFLFRYADDSFSNSFVSTVGIDFKVKTV 63
>gi|292627974|ref|XP_683305.2| PREDICTED: ras-related protein Rab-19-like [Danio rerio]
Length = 225
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 96/170 (56%), Gaps = 8/170 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT +Q F + + NT+GVDF+ + + GR VK+Q+WD A
Sbjct: 24 FKIILIGDSNVGKTCVIQSFRSAEVTELQHNTIGVDFTVRSMD---VDGRRVKMQVWDTA 80
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ G +I +DL+ R +F+S+ W L+ A L +L+ +
Sbjct: 81 GQERFRTITQSYYRSAHGAMIAYDLSRRDTFDSLPHWIQALEQY----GAASLVLVLIGN 136
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL RQV + + + ++ +E S+K H IE++ + ++
Sbjct: 137 KCDLEAQRQVLFEDACTLAERSGALAALETSAKHHHNIEEAFQLMARELL 186
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT +Q F + + NT+GVDF+ + + GR VK+Q+WD
Sbjct: 24 FKIILIGDSNVGKTCVIQSFRSAEVTELQHNTIGVDFTVRSMD---VDGRRVKMQVWD 78
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ KI++IGDS VGKT +Q F + + NT+GVDF+ +
Sbjct: 23 LFKIILIGDSNVGKTCVIQSFRSAEVTELQHNTIGVDFTVR 63
>gi|383852599|ref|XP_003701814.1| PREDICTED: uncharacterized protein LOC100884103 [Megachile
rotundata]
Length = 739
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 94/163 (57%), Gaps = 9/163 (5%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
TY +L+ GDS VGKT V + ++ D Y +T+G+DF K+++ G P+KLQIWD
Sbjct: 8 TYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIIN---LDGTPIKLQIWDT 64
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ ++ YY+ + G ++M+D+T+ +SF + W ++ D + +L A
Sbjct: 65 AGQERFRTLTTAYYRGAMGILLMYDVTSLESFNHLSYWLRNIQENASSD----VVKVLAA 120
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
+KCD R V+ + ++ M + EVS KE++ IE++
Sbjct: 121 NKCDATAHRAVDAERGMKIAENFD-MPFFEVSCKENINIEEAF 162
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+Y +L+ GDS VGKT V + ++ D Y +T+G+DF K+++ G P+KLQIWD
Sbjct: 8 TYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIIN---LDGTPIKLQIWD 63
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
D K+LV+GDS VGKT V + ++ D Y +T+G+DF K+++
Sbjct: 4 DFAATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIIN 51
>gi|242004797|ref|XP_002423263.1| RAB 3 and, putative [Pediculus humanus corporis]
gi|212506265|gb|EEB10525.1| RAB 3 and, putative [Pediculus humanus corporis]
Length = 255
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 101/176 (57%), Gaps = 10/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 56 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWDT 111
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++ YY+ + G I+M+D+TN +SF SV W + + DN + +L+
Sbjct: 112 AGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWVTQIKTYS-WDNAQV---ILVG 167
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
+KCD+ D +V E + + + E S+KE++ ++ LVD IIC K E
Sbjct: 168 NKCDMEDERVISFERGKQLSEQLGIEFFETSAKENINVKAVFERLVD-IICDKMSE 222
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 56 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWD 110
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKK 154
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K + H K
Sbjct: 55 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK 102
>gi|413942419|gb|AFW75068.1| hypothetical protein ZEAMMB73_080599 [Zea mays]
gi|413942420|gb|AFW75069.1| hypothetical protein ZEAMMB73_080599 [Zea mays]
Length = 205
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 110/188 (58%), Gaps = 10/188 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS+VGK+ + F + ++D Y +T+GVDF + + G+ VKLQIWD A
Sbjct: 11 FKLLLIGDSSVGKSCLLLRFADDSYVDTYISTIGVDFKIRTID---LDGKTVKLQIWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G II++D+T+ +SF ++ QW ++D + DN + LL+ +
Sbjct: 68 GQERFRTITSSYYRGAHGIIIVYDVTDMESFNNIKQWLSEID-RYASDN---VCKLLVGN 123
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE-AV 419
KCDL D +V E + +IE S+KE + +E++ FL KRM + V
Sbjct: 124 KCDLVDSKVVDTEKAKDFADSLGIPFIETSAKESINVEEA--FLTMSSEIKKRMATQPTV 181
Query: 420 ERKSSIRL 427
ER+ ++ +
Sbjct: 182 ERRPTVHV 189
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS+VGK+ + F + ++D Y +T+GVDF + + G+ VKLQIWD
Sbjct: 11 FKLLLIGDSSVGKSCLLLRFADDSYVDTYISTIGVDFKIRTID---LDGKTVKLQIWD 65
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS+VGK+ + F + ++D Y +T+GVDF + +
Sbjct: 10 LFKLLLIGDSSVGKSCLLLRFADDSYVDTYISTIGVDFKIRTI 52
>gi|327262966|ref|XP_003216293.1| PREDICTED: ras-related protein Rab-3C-like [Anolis carolinensis]
Length = 219
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 112/194 (57%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 135
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ +R + + + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 136 KCDMEEERVISTDRGKHLAEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 191
Query: 420 ERKSSIRLSEETLR 433
E +I ++ R
Sbjct: 192 ETDPAIAAGKQNTR 205
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 77
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 64
>gi|195390341|ref|XP_002053827.1| GJ23131 [Drosophila virilis]
gi|194151913|gb|EDW67347.1| GJ23131 [Drosophila virilis]
Length = 213
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 98/173 (56%), Gaps = 10/173 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ TY +L+ GDS VGKT V + K+ D Y +T+G+DF KL++ G P+KLQIW
Sbjct: 6 VATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLIN---LDGVPIKLQIW 62
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+R+ ++ YY+ + G ++M+D+TN +S+ ++ W ++ D + +L
Sbjct: 63 DTAGQERFRTLTTAYYRGAMGILLMYDVTNLESYNNLSYWLRNIQENASPD----VVKVL 118
Query: 358 LASKCDLP--DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+KC+ R V+ E + ++ M + EVS K ++ IED+ L +I
Sbjct: 119 AGNKCECSTTQRMVDKERGEKIAENFD-MPFFEVSCKSNINIEDAFLSLARKI 170
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+Y +L+ GDS VGKT V + K+ D Y +T+G+DF KL++ G P+KLQIWD
Sbjct: 7 ATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLIN---LDGVPIKLQIWD 63
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
D K+LV+GDS VGKT V + K+ D Y +T+G+DF KL++
Sbjct: 4 DFVATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLIN 51
>gi|195053462|ref|XP_001993645.1| GH20855 [Drosophila grimshawi]
gi|193895515|gb|EDV94381.1| GH20855 [Drosophila grimshawi]
Length = 213
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 98/173 (56%), Gaps = 10/173 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ TY +L+ GDS VGKT V + K+ D Y +T+G+DF KL++ G P+KLQIW
Sbjct: 6 VATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLIN---LDGVPIKLQIW 62
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+R+ ++ YY+ + G ++M+D+TN +S+ ++ W ++ D + +L
Sbjct: 63 DTAGQERFRTLTTAYYRGAMGILLMYDVTNLESYNNLSYWLRNIQENASPD----VVKVL 118
Query: 358 LASKCDLP--DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+KC+ R V+ + E + + M + EVS K ++ IED+ L +I
Sbjct: 119 AGNKCECSTTQRMVDKDRGEKIAENFE-MPFFEVSCKSNINIEDAFLSLARKI 170
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+Y +L+ GDS VGKT V + K+ D Y +T+G+DF KL++ G P+KLQIWD
Sbjct: 7 ATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLIN---LDGVPIKLQIWD 63
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
D K+LV+GDS VGKT V + K+ D Y +T+G+DF KL++
Sbjct: 4 DFVATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLIN 51
>gi|17555956|ref|NP_499454.1| Protein RAB-35 [Caenorhabditis elegans]
gi|6018411|emb|CAB57899.1| Protein RAB-35 [Caenorhabditis elegans]
Length = 209
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 109/203 (53%), Gaps = 12/203 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +NY T+GVDF + + G+ VKLQIWD A
Sbjct: 11 FKLLIIGDSGVGKSSLLLRFADNTFSENYITTIGVDFKIRTMD---INGQRVKLQIWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN +SF +V +W ++++ C + +L+ +
Sbjct: 68 GQERFRTITSTYYRGTHGVVVVYDVTNGESFGNVKRWLQEIENNC-----DSVQKVLVGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV- 419
KC+ +R+V + Q +S+ E S+KE +E + ++ +K ++
Sbjct: 123 KCEENERRVVLESDARNYAQSMNISFFETSAKEDKNVEPMFTCITSLVLTAKLANPQSAS 182
Query: 420 ---ERKSSIRLSEETLRDDQPKK 439
R + L + + +Q KK
Sbjct: 183 KDQSRTGGVSLKDNSGSTNQKKK 205
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F +NY T+GVDF + + G+ VKLQIWD
Sbjct: 11 FKLLIIGDSGVGKSSLLLRFADNTFSENYITTIGVDFKIRTMD---INGQRVKLQIWD 65
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
D + + K+L+IGDS VGK+S + F N F +NY T+GVDF + +
Sbjct: 6 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSENYITTIGVDFKIRTM 52
>gi|340714578|ref|XP_003395804.1| PREDICTED: ras-related protein Rab-43-like [Bombus terrestris]
gi|350411163|ref|XP_003489259.1| PREDICTED: ras-related protein Rab-43-like [Bombus impatiens]
Length = 219
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 100/169 (59%), Gaps = 15/169 (8%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK--LLSHKKYGGRPVKLQIWD 298
+ I++ GD GKT VQ F F++ + NT+GVDFS K L+ KK VKLQIWD
Sbjct: 21 FKIVLIGDCGTGKTCVVQRFRSGTFIERHGNTIGVDFSMKTVLIDDKK-----VKLQIWD 75
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
AGQ+R+ +++ YY++++G I+++D+T R +F S+ W ++ + + +L+
Sbjct: 76 TAGQERFRTITQSYYRSANGVIVVYDITKRSTFLSLQHWVEEVRRY----TSSHVLLILV 131
Query: 359 ASKCDLPD-RQVEINEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFL 404
+KCDL R+VE E EA+C QY + +E S+KE+ I+ +L
Sbjct: 132 GNKCDLESLREVEKGEAEALC-QYLPEVLQVVETSAKENTNIDSVFFYL 179
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 7/60 (11%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK--LLSHKKYGGRPVKLQIWD 228
+ I++ GD GKT VQ F F++ + NT+GVDFS K L+ KK VKLQIWD
Sbjct: 21 FKIVLIGDCGTGKTCVVQRFRSGTFIERHGNTIGVDFSMKTVLIDDKK-----VKLQIWD 75
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK--LLSHKK 154
+ KI++IGD GKT VQ F F++ + NT+GVDFS K L+ KK
Sbjct: 20 LFKIVLIGDCGTGKTCVVQRFRSGTFIERHGNTIGVDFSMKTVLIDDKK 68
>gi|339235645|ref|XP_003379377.1| GTP-binding protein Ypt2 [Trichinella spiralis]
gi|316977954|gb|EFV60990.1| GTP-binding protein Ypt2 [Trichinella spiralis]
Length = 189
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 101/166 (60%), Gaps = 11/166 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD +GKT VQ F FL+ +T+GVDF+ K L G+ VKLQ+WD
Sbjct: 13 FKIVLIGDMGIGKTCVVQRFKNGTFLERQGSTIGVDFTMKTLI---VDGKRVKLQVWDTG 69
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA-MLPCLLLA 359
GQ+R+ +++ YY++++G II +D+T RKSF++V +W D +L A + LL+A
Sbjct: 70 GQERFRTITQSYYRSANGIIICYDVTCRKSFKNVRRWLDD-----VLKFAAPNVVKLLVA 124
Query: 360 SKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFL 404
+K DL DR V E EA+ Q M++IE S+KE+L ++ + L
Sbjct: 125 TKIDLENDRLVSTEEGEALA-QAEQMNFIETSAKENLNVDQAFENL 169
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD +GKT VQ F FL+ +T+GVDF+ K L G+ VKLQ+WD
Sbjct: 13 FKIVLIGDMGIGKTCVVQRFKNGTFLERQGSTIGVDFTMKTLI---VDGKRVKLQVWD 67
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 102 PSDA-ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P D+ + + KI++IGD +GKT VQ F FL+ +T+GVDF+ K L
Sbjct: 5 PEDSFDYLFKIVLIGDMGIGKTCVVQRFKNGTFLERQGSTIGVDFTMKTL 54
>gi|126631404|gb|AAI33763.1| RAB35 protein [Xenopus laevis]
Length = 248
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 105/174 (60%), Gaps = 10/174 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD A
Sbjct: 56 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWDTA 112
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+ +SF +V +W H+++ C D+ + +L+ +
Sbjct: 113 GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DD---VCRILVGN 167
Query: 361 KCDLPDRQ-VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K D P+R+ VE + Q + + E S+KE+L +E+ N + + ++ +K+
Sbjct: 168 KNDDPERKVVETEDAFKFAGQMD-IQLFETSAKENLNVEEMFNCITELVLRAKK 220
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD
Sbjct: 56 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWD 110
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 89 PSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
P P + D + + K+L+IGDS VGK+S + F N F +Y T+GVDF +
Sbjct: 36 PGPGLPFVQVATMARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIR 95
>gi|354482851|ref|XP_003503609.1| PREDICTED: ras-related protein Rab-43-like [Cricetulus griseus]
Length = 203
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 103/179 (57%), Gaps = 9/179 (5%)
Query: 233 LSPIQIPTYPILITG-DSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 291
+ I I + +L+ G + +VGKT VQ F F +T+GVDF+ K L + G+
Sbjct: 1 MQEIWIYRFRLLVLGGEESVGKTCVVQRFKTGVFSARQGSTIGVDFTMKTLEIQ---GKR 57
Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA 351
VKLQIWD AGQ+R+ +++ YY++++G I+ +D+T R +F SV W D+ G+
Sbjct: 58 VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSTFLSVPHWIEDVRKYA----GS 113
Query: 352 MLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+ LL+ +K DL D R+V + E +++ Y+ + IE S+K+ +E++ + +I
Sbjct: 114 NIVQLLIGNKSDLADFREVPLTEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATELI 172
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 172 LILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
L+++ G+ +VGKT VQ F F +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 11 LLVLGGEESVGKTCVVQRFKTGVFSARQGSTIGVDFTMKTLEIQ---GKRVKLQIWD 64
>gi|444727864|gb|ELW68342.1| Ras-related protein Rab-37 [Tupaia chinensis]
Length = 293
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 138/271 (50%), Gaps = 27/271 (9%)
Query: 166 IQTPSYLILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
+ P ++ GDS VGKTS + F Q KF+ ++ TVG+ F+++ ++ G P
Sbjct: 24 LSLPLVQTILVGDSGVGKTSLLVQFDQGKFIPGSFSATVGIGFTSRDMT-----GTPGAA 78
Query: 225 QIWDIY-------CTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLD-NYKNTVGVD 276
D C+LS T +++ GDS VGKT ++ F FL + TVG+D
Sbjct: 79 AARDGEAPERSSPCSLS--YDLTGKVMLLGDSGVGKTCFLIQFKDGAFLSRTFIATVGID 136
Query: 277 FSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ 336
F K+++ G VKLQIWD AGQ+R+ ++ YY+++ ++++D+TN+ SF+++
Sbjct: 137 FRNKVVT---VDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRA 193
Query: 337 WKHDLDSKCILDNGAMLPCLLLASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHL 395
W ++ D + +LL +K D+ +R + + E + +Y + ++E S+K +
Sbjct: 194 WLTEIHEYAQRD----VVIMLLGNKADVSSERVIRSEDGEMLAREYG-VPFMETSAKTGM 248
Query: 396 MIEDSMNFLVDRIICSKRMEEEAVERKSSIR 426
+E + FL R +A E IR
Sbjct: 249 NVE--LAFLAIAKELKYRAGRQANEPSFQIR 277
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 13/131 (9%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPI 166
+++ +++GDS VGKTS + F Q KF+ ++ TVG+ F+++ ++ +P
Sbjct: 28 LVQTILVGDSGVGKTSLLVQFDQGKFIPGSFSATVGIGFTSRDMTGTPGAAAARDGEAPE 87
Query: 167 Q-TPSYL-------ILITGDSTVGKTSYVQGFVQNKFLD-NYKNTVGVDFSTKLLSHKKY 217
+ +P L +++ GDS VGKT ++ F FL + TVG+DF K+++
Sbjct: 88 RSSPCSLSYDLTGKVMLLGDSGVGKTCFLIQFKDGAFLSRTFIATVGIDFRNKVVT---V 144
Query: 218 GGRPVKLQIWD 228
G VKLQIWD
Sbjct: 145 DGVRVKLQIWD 155
>gi|195162179|ref|XP_002021933.1| GL14374 [Drosophila persimilis]
gi|198470911|ref|XP_001355432.2| GA13248 [Drosophila pseudoobscura pseudoobscura]
gi|194103831|gb|EDW25874.1| GL14374 [Drosophila persimilis]
gi|198145678|gb|EAL32490.2| GA13248 [Drosophila pseudoobscura pseudoobscura]
Length = 230
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 107/189 (56%), Gaps = 8/189 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDIAG 301
L+ GDS VGKT + + +F + +TVG+DF K L + G R + LQIWD AG
Sbjct: 14 FLVLGDSGVGKTCLLYQYTDGRFNTQFISTVGIDFREKRLVYNSRGRRHRIHLQIWDTAG 73
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
Q+R+ ++ +Y+++ G +++FDLT+ KSF V W L ++ ++ C +K
Sbjct: 74 QERFRSLTTAFYRDAMGFLLIFDLTSEKSFLETVNWLEQLRMHAYSEDPDVVLC---GNK 130
Query: 362 CDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
CDL R V +++ A+C +Y + +IE S+ +++++ LV R++ R+E A
Sbjct: 131 CDLLQLRVVSRDQVAALCRRYR-LPYIETSACTGANVQEAVQLLVGRVM--DRIENAACN 187
Query: 421 RKSSIRLSE 429
R+ S+ L++
Sbjct: 188 RELSLLLTQ 196
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWD 228
L+ GDS VGKT + + +F + +TVG+DF K L + G R + LQIWD
Sbjct: 14 FLVLGDSGVGKTCLLYQYTDGRFNTQFISTVGIDFREKRLVYNSRGRRHRIHLQIWD 70
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR 158
D + +LK LV+GDS VGKT + + +F + +TVG+DF K L + G R
Sbjct: 7 DYDYLLKFLVLGDSGVGKTCLLYQYTDGRFNTQFISTVGIDFREKRLVYNSRGRR 61
>gi|219116893|ref|XP_002179241.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409132|gb|EEC49064.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 213
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 108/193 (55%), Gaps = 6/193 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GD++VGK+S + F + F ++ ++T+GVDF K H + G+ VKL IWD A
Sbjct: 15 FKVLIIGDASVGKSSMLLRFTDDSFDEHIQSTIGVDFKVK---HLEVEGKRVKLTIWDTA 71
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+T SFE++ QW ++ NG + LL+ +
Sbjct: 72 GQERFRTLTSSYYRGAHGVVLVYDVTRTDSFENLQQWLKEVQMYSP-GNGESVVKLLVGN 130
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
KCDL +RQV E +A M ++E S+K L I +V +++ + AV
Sbjct: 131 KCDL-ERQVPFEEADAWARSQG-MLFLEASAKTRLGIRQVFTEVVKKMLENPETLATAVP 188
Query: 421 RKSSIRLSEETLR 433
+ +++ + R
Sbjct: 189 GRPKVQIKPQHAR 201
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GD++VGK+S + F + F ++ ++T+GVDF K H + G+ VKL IWD
Sbjct: 15 FKVLIIGDASVGKSSMLLRFTDDSFDEHIQSTIGVDFKVK---HLEVEGKRVKLTIWD 69
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 31/43 (72%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGD++VGK+S + F + F ++ ++T+GVDF K L
Sbjct: 14 LFKVLIIGDASVGKSSMLLRFTDDSFDEHIQSTIGVDFKVKHL 56
>gi|426239405|ref|XP_004013612.1| PREDICTED: ras-related protein Rab-7b-like [Ovis aries]
Length = 200
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 107/196 (54%), Gaps = 10/196 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I G VGKTS + +V F ++Y+ T+G +K++ +KLQIWD GQ
Sbjct: 11 LIIIGALGVGKTSLLHQYVHKTFYEDYQTTLGASILSKIII---LDDTTLKLQIWDTGGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ M +Y+ SDGC++ FD+T+ +SFE++ W+ D+ +K I + P ++L +K
Sbjct: 68 ERFRSMVSTFYKGSDGCVLAFDVTDLESFEALETWRGDVLAKTIPMEQSY-PMVVLGNKI 126
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL DRQV + C + + + + EVS+K + + + L R + R E+
Sbjct: 127 DLADRQVPQEVAQGWCKEKD-IPYFEVSAKNDINVVQAFEMLASRALSRYRSILESY-LT 184
Query: 423 SSIRLSEETLRDDQPK 438
SI+LS E DQPK
Sbjct: 185 DSIKLSPE----DQPK 196
>gi|410912320|ref|XP_003969638.1| PREDICTED: ras-related protein Rab-8B-like [Takifugu rubripes]
gi|410930031|ref|XP_003978402.1| PREDICTED: ras-related protein Rab-8B-like [Takifugu rubripes]
Length = 205
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 104/178 (58%), Gaps = 10/178 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F ++ F + +T+G+DF + + + G+ +KLQIWD A
Sbjct: 9 FKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTV---ELDGKKIKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSF+++ W +++ D + +LL +
Sbjct: 66 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWMRNIEEHASSD----VERMLLGN 121
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII--CSKRMEE 416
KCD+ RQV E + Y+ + ++E S+K L +E++ L I+ S++M E
Sbjct: 122 KCDMDKRQVAKERGEKLAIDYS-IKFLETSAKAGLNVEEAFLTLARDIMGRLSRKMNE 178
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 167 QTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
+T YL +L+ GDS VGKT + F ++ F + +T+G+DF + + + G+ +KL
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTV---ELDGKKIKL 59
Query: 225 QIWD 228
QIWD
Sbjct: 60 QIWD 63
>gi|354493410|ref|XP_003508835.1| PREDICTED: ras-related protein Rab-39A-like [Cricetulus griseus]
Length = 217
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 100/181 (55%), Gaps = 11/181 (6%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYG 288
+ I I + +++ GDSTVGK+ + F Q +F TVGVDF ++LL +
Sbjct: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP-- 58
Query: 289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD 348
G+ +KLQ+WD AGQ+R+ ++R YY+NS G ++FD+TNR+SFE V W L+ +
Sbjct: 59 GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDW---LEEAKMHV 115
Query: 349 NGAMLPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
+ LL+ KCDL RQV E E + M +IE S+K+ +E+S L
Sbjct: 116 QPFHIIFLLVGHKCDLASQRQVSREEAEKLSTDCG-MKYIETSAKDATNVEESFTILTRD 174
Query: 408 I 408
I
Sbjct: 175 I 175
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
+ +++ GDSTVGK+ + F Q +F TVGVDF ++LL + G+ +KLQ+
Sbjct: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP--GKRIKLQL 66
Query: 227 WD 228
WD
Sbjct: 67 WD 68
>gi|357619225|gb|EHJ71885.1| Rab7 [Danaus plexippus]
Length = 208
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 88/156 (56%), Gaps = 3/156 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + FV KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVI---VDDRIVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+S+ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398
DL +R V + C N + + E S+KE + +E
Sbjct: 128 DLENRAVSAKRAQQWCQSKNDIPYFETSAKEAVNVE 163
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + FV KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTK 48
>gi|225709764|gb|ACO10728.1| Ras-related protein Rab-7a [Caligus rogercresseyi]
Length = 208
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 89/159 (55%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + + V +QIWD AGQ
Sbjct: 14 VIILGDSGVGKTSLMNQYVNKKFSNRYKATIGADFLTKEV---MVDDQLVTMQIWDTAGQ 70
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++ +D+T+ SF S+ W+ + + + P ++L +K
Sbjct: 71 ERFQSLGVAFYRGADCCVLCYDVTDPTSFMSLESWRDEFLIQASPSDPENFPFVVLGNKV 130
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL DR V + CH N + + E S+KE + +E +
Sbjct: 131 DLEDRSVSSKRAQHWCHSKNEVPYFETSAKEAINVEQAF 169
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + + V +QIWD
Sbjct: 14 VIILGDSGVGKTSLMNQYVNKKFSNRYKATIGADFLTKEV---MVDDQLVTMQIWD 66
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 6 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNRYKATIGADFLTK 51
>gi|114051368|ref|NP_001040368.1| Rab7 [Bombyx mori]
gi|95102652|gb|ABF51264.1| Rab7 [Bombyx mori]
Length = 208
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 89/156 (57%), Gaps = 3/156 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + FV KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVI---VDDRIVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+S+ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398
DL +R V + + C N + + E S+KE + +E
Sbjct: 128 DLDNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVE 163
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 30/41 (73%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+LK++++GDS VGKTS + FV KF + YK T+G DF TK
Sbjct: 8 LLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTK 48
>gi|1491714|emb|CAA68227.1| rab-related GTP-binding protein [Homo sapiens]
Length = 217
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 100/182 (54%), Gaps = 11/182 (6%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYG 288
+ I I + +++ GDSTVGK+ + F Q +F TVGVDF ++LL +
Sbjct: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP-- 58
Query: 289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD 348
G+ +KLQ+WD AGQ+R+ ++R YY+NS G ++FD+TNR+SFE V W L+ +
Sbjct: 59 GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDW---LEEAKMYV 115
Query: 349 NGAMLPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
+ LL+ KCDL RQV E E + M +IE S+K+ +E+S L
Sbjct: 116 QPFRIVFLLVGHKCDLASQRQVTREEAEKLSADCGMM-YIETSAKDATNVEESSTILTRD 174
Query: 408 II 409
I
Sbjct: 175 IF 176
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
+ +++ GDSTVGK+ + F Q +F TVGVDF ++LL + G+ +KLQ+
Sbjct: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP--GKRIKLQL 66
Query: 227 WD 228
WD
Sbjct: 67 WD 68
>gi|340506305|gb|EGR32473.1| Ras family protein, putative [Ichthyophthirius multifiliis]
Length = 211
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 100/153 (65%), Gaps = 9/153 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+S VGK+ + F +N+F +N+ NT+GVDF K + + G+ +KLQIWD A
Sbjct: 13 FKLLLIGNSGVGKSCMLMRFSENQFTNNFYNTIGVDFKIKTI---QLNGKNIKLQIWDTA 69
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQDR+ ++ YY+ + G ++FD+T+++SFE+V W +++ K +N + +L+ +
Sbjct: 70 GQDRFKTITCSYYRGAHGIAVVFDITDKQSFENVKGWMVEIE-KYAQEN---VCRILVGN 125
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSK 392
K D+ +RQV+ E + + YN +++IEVS+K
Sbjct: 126 KTDMNENRQVQYQEGQELAQMYN-LNYIEVSAK 157
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 7/69 (10%)
Query: 160 YGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG 219
YG + + + +L+ G+S VGK+ + F +N+F +N+ NT+GVDF K + + G
Sbjct: 6 YGEYDYL----FKLLLIGNSGVGKSCMLMRFSENQFTNNFYNTIGVDFKIKTI---QLNG 58
Query: 220 RPVKLQIWD 228
+ +KLQIWD
Sbjct: 59 KNIKLQIWD 67
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S VGK+ + F +N+F +N+ NT+GVDF K +
Sbjct: 12 LFKLLLIGNSGVGKSCMLMRFSENQFTNNFYNTIGVDFKIKTI 54
>gi|324528770|gb|ADY48949.1| Ras-related protein Rab-10 [Ascaris suum]
Length = 201
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 99/169 (58%), Gaps = 7/169 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F + F + +T+G+DF K + K G+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKTCILYRFSDDAFNTTFISTIGIDFKIKTIELK---GKKIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSF+++ +W ++D D + +LL +
Sbjct: 67 GQERFHTITTSYYRGAMGIMLVYDITNAKSFDNIAKWLRNIDEHASED----VEKMLLGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCD+ DR+V E + + ++E S+K ++ I+ + L + I+
Sbjct: 123 KCDMADRRVVSRERGEKIANDHGIRFLETSAKANIQIDKAFYDLAEAIL 171
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F + F + +T+G+DF K + K G+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKTCILYRFSDDAFNTTFISTIGIDFKIKTIELK---GKKIKLQIWD 64
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 153
+ + K+L+IGDS VGKT + F + F + +T+G+DF K + K
Sbjct: 7 DLLFKLLLIGDSGVGKTCILYRFSDDAFNTTFISTIGIDFKIKTIELK 54
>gi|301617603|ref|XP_002938225.1| PREDICTED: ras-related protein Rab-3C-like [Xenopus (Silurana)
tropicalis]
Length = 219
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 10/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 135
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D R + + + Q F + E S+K+++ ++ + LVD IIC K E
Sbjct: 136 KCDMEDERVISAERGKHLAEQLGF-EFFEASAKDNINVKQTFERLVD-IICDKMSE 189
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 77
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 64
>gi|74831366|emb|CAI39290.1| rab_C88 [Paramecium tetraurelia]
Length = 334
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 116/188 (61%), Gaps = 9/188 (4%)
Query: 228 DIYCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 287
D+Y L ++ + I+ G S+VGK+S ++ F++N+F +TVGV +K+++
Sbjct: 10 DMYLLLYSLRQLCFKIVFLGSSSVGKSSIIKRFLKNEFAMKSMSTVGVACESKVIT---I 66
Query: 288 GGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCIL 347
+ VK+Q+WD AGQ+RY +++ YY+N D +I++D+ N KSF V W D + KC
Sbjct: 67 HNQQVKVQLWDTAGQERYRSLTKNYYRNCDAVVIVYDIANMKSFYQVKGWIADFEDKC-- 124
Query: 348 DNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
+ A+ +LL +K DL +R+V I E+ + Q + + EVS+K++ +E++M L++
Sbjct: 125 ERPAIK--MLLGNKIDL-NREVGI-ELGTLLAQKQKLLFQEVSAKQNTNVENAMIKLIEI 180
Query: 408 IICSKRME 415
+I +++++
Sbjct: 181 MIQTRQID 188
>gi|384247403|gb|EIE20890.1| ras-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 212
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 103/169 (60%), Gaps = 11/169 (6%)
Query: 231 CTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR 290
T+SP+ Y ++ GD +VGKTS + F+ +KF + Y+ T+G+DF +K + + R
Sbjct: 5 TTVSPL--AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED---R 59
Query: 291 PVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNG 350
V+LQ+WD AGQ+R+ + Y ++S ++++D++NR+SF + +W ++ + + G
Sbjct: 60 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRQSFLNTARWIEEVRT----ERG 115
Query: 351 AMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398
+ + +L+ +K DL D RQV I E +A ++N M +IE S+K I+
Sbjct: 116 SDVIVVLVGNKTDLVDKRQVSIEEGDAKAREFNVM-FIETSAKAGFNIK 163
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 5/67 (7%)
Query: 162 TFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 221
T SP+ Y ++ GD +VGKTS + F+ +KF + Y+ T+G+DF +K + + R
Sbjct: 6 TVSPL--AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED---RT 60
Query: 222 VKLQIWD 228
V+LQ+WD
Sbjct: 61 VRLQLWD 67
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 30/41 (73%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
K++ +GD +VGKTS + F+ +KF + Y+ T+G+DF +K +
Sbjct: 14 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTM 54
>gi|348553214|ref|XP_003462422.1| PREDICTED: ras-related protein Rab-39A-like [Cavia porcellus]
Length = 217
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 100/181 (55%), Gaps = 11/181 (6%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYG 288
+ I + + +++ GDSTVGK+ + F Q +F TVGVDF ++LL +
Sbjct: 1 METIWVYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP-- 58
Query: 289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD 348
G+ +KLQ+WD AGQ+R+ ++R YY+NS G ++FD+TNR+SFE V W L+ +
Sbjct: 59 GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDW---LEEAKMHV 115
Query: 349 NGAMLPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
+ LL+ KCDL RQV E E + M +IE S+K+ +E+S L
Sbjct: 116 QPFQIVFLLVGHKCDLASQRQVTREEAEKLSADCG-MKYIETSAKDATNVEESFTILTRD 174
Query: 408 I 408
I
Sbjct: 175 I 175
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 166 IQTPSYLILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYGGRP 221
I + +++ GDSTVGK+ + F Q +F TVGVDF ++LL + G+
Sbjct: 4 IWVYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP--GKR 61
Query: 222 VKLQIWD 228
+KLQ+WD
Sbjct: 62 IKLQLWD 68
>gi|225718862|gb|ACO15277.1| Ras-related protein Rab-7a [Caligus clemensi]
gi|225719168|gb|ACO15430.1| Ras-related protein Rab-7a [Caligus clemensi]
Length = 205
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 89/159 (55%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + + V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV---MVDDQLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++ +D+T+ SF S+ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLCYDVTDTNSFSSLESWRDEFLIQASPSDPENFPFVVLGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +R V + CH N + + E S+KE + +E +
Sbjct: 128 DLENRAVSSKRAQQWCHSKNEVPYFETSAKEAINVEQAF 166
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + + V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV---MVDDQLVTMQIWD 63
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|313229256|emb|CBY23842.1| unnamed protein product [Oikopleura dioica]
Length = 213
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 109/185 (58%), Gaps = 8/185 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD A
Sbjct: 17 FKLLLIGDSGVGKTCVLFRFSDDTFNTTFISTIGIDFKIKTVELQ---GKKIKLQIWDTA 73
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ ++G ++++D+T K+F+++ +W +++ D + +L+ +
Sbjct: 74 GQERFHTITTSYYRGANGILLVYDITQPKTFDNISKWLRNINEHASED----VERMLIGN 129
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
KCD+ D+++ E + N + + E S+KE++ IE + N L + I+ +R E+ E
Sbjct: 130 KCDMEDKRLISEERGRKVAEENGIKFFETSAKENINIEIAFNSLAEDILNKQRPVEDN-E 188
Query: 421 RKSSI 425
RK +
Sbjct: 189 RKGGV 193
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD
Sbjct: 17 FKLLLIGDSGVGKTCVLFRFSDDTFNTTFISTIGIDFKIKTVELQ---GKKIKLQIWD 71
>gi|149716473|ref|XP_001501057.1| PREDICTED: ras-related protein Rab-39A-like [Equus caballus]
Length = 217
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 100/181 (55%), Gaps = 11/181 (6%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYG 288
+ I I + +++ GDSTVGK+ + F Q +F TVGVDF ++LL +
Sbjct: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP-- 58
Query: 289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD 348
G+ +KLQ+WD AGQ+R+ ++R YY+NS G ++FD+TNR+SFE V W L+ +
Sbjct: 59 GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDW---LEEAKMYV 115
Query: 349 NGAMLPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
+ LL+ KCDL RQV E E + M +IE S+++ +E+S L
Sbjct: 116 QPFRIVFLLVGHKCDLASQRQVTREEAEKLSADCG-MKYIETSARDATNVEESFTILTRD 174
Query: 408 I 408
I
Sbjct: 175 I 175
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
+ +++ GDSTVGK+ + F Q +F TVGVDF ++LL + G+ +KLQ+
Sbjct: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP--GKRIKLQL 66
Query: 227 WD 228
WD
Sbjct: 67 WD 68
>gi|391334451|ref|XP_003741617.1| PREDICTED: ras-related protein Rab-23-like [Metaseiulus
occidentalis]
Length = 216
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 97/170 (57%), Gaps = 7/170 (4%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
+ +++ G+ VGK+S +Q F + F NYK T+GVDF ++L GR V+L +WD
Sbjct: 6 AFKLVVVGNGAVGKSSLIQRFCRGVFSQNYKQTIGVDFLERVLEIG--NGRCVRLMVWDT 63
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+ + ++R YY+ + G I+ F T+ +SFE+V W+ ++++C LP +L+
Sbjct: 64 AGQEEFDALTRAYYRGAHGAILAFSSTDLQSFEAVDSWRSKVEAEC-----GSLPMVLVQ 118
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+K DL D+ + E+ + + + S+K+ ++++ +L ++ +
Sbjct: 119 NKMDLADQALVSPEMAENAARRHRLRLYRTSAKQDFNVDEAFRYLAEKCM 168
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++ +++ G+ VGK+S +Q F + F NYK T+GVDF ++L GR V+L +WD
Sbjct: 6 AFKLVVVGNGAVGKSSLIQRFCRGVFSQNYKQTIGVDFLERVLEIG--NGRCVRLMVWD 62
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E K++V+G+ VGK+S +Q F + F NYK T+GVDF ++L
Sbjct: 4 ELAFKLVVVGNGAVGKSSLIQRFCRGVFSQNYKQTIGVDFLERVL 48
>gi|302662118|ref|XP_003022718.1| hypothetical protein TRV_03179 [Trichophyton verrucosum HKI 0517]
gi|291186678|gb|EFE42100.1| hypothetical protein TRV_03179 [Trichophyton verrucosum HKI 0517]
Length = 316
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 102/194 (52%), Gaps = 5/194 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V K+ +YK T+G D+ TK GR V +QIWD AGQ
Sbjct: 122 VIILGDSGVGKTSLMNQYVNKKYSASYKATIGADYLTK---EVMVDGRLVTMQIWDTAGQ 178
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+ N KSFE++ W+ + + L + P ++L +K
Sbjct: 179 ERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQANLRDPESFPFVVLGNKI 238
Query: 363 DLPD--RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
D+ + R + C + + E S+KE + +E + + + + EE +
Sbjct: 239 DVEESKRMISSKRASTYCQSKGNIPYFETSAKEAINVEQAFEVIAKSALMQEESEEFNGD 298
Query: 421 RKSSIRLSEETLRD 434
I ++ ++ RD
Sbjct: 299 FDDVINVNHDSDRD 312
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 29/40 (72%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
++++++GDS VGKTS + +V K+ +YK T+G D+ TK
Sbjct: 120 IQVIILGDSGVGKTSLMNQYVNKKYSASYKATIGADYLTK 159
>gi|38454238|ref|NP_942044.1| ras-related protein Rab-15 [Rattus norvegicus]
gi|464561|sp|P35289.1|RAB15_RAT RecName: Full=Ras-related protein Rab-15
gi|206537|gb|AAA41995.1| RAB15 [Rattus norvegicus]
gi|63102340|gb|AAH94954.1| RAB15, member RAS oncogene family [Rattus norvegicus]
gi|149051505|gb|EDM03678.1| rCG61451, isoform CRA_b [Rattus norvegicus]
Length = 212
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 119/213 (55%), Gaps = 10/213 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + + G V++QIWD A
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI---EVDGIKVRIQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY +++ YY+ + G +++D+++ +S++ +++W D+D + +L+ +
Sbjct: 66 GQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA----PEGVQKILIGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D RQV + + + +Y M + E S+ +L I++S L + ++ + R E + +
Sbjct: 122 KADEEQKRQVGREQGQQLAKEYG-MDFYETSACTNLNIKESFTRLTELVLQAHRKELDGL 180
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
+S L+ L +D+ K PA+ T CWC
Sbjct: 181 RTCASNELALAELEEDEGKTEGPANSSKT-CWC 212
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + + G V++QIWD
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI---EVDGIKVRIQIWD 63
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ + ++L+IGDS VGKT + F N+F ++ +T+GVDF K +
Sbjct: 6 DVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI 50
>gi|147899840|ref|NP_001087991.1| RAB3D, member RAS oncogene family [Xenopus laevis]
gi|52139114|gb|AAH82662.1| LOC494677 protein [Xenopus laevis]
Length = 217
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 114/199 (57%), Gaps = 13/199 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD A
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNE---KRVKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G ++M+D++N +SF +V W + + DN + LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFLLMYDISNMESFNAVQDWATQIKTYS-WDNAQV---LLVGN 135
Query: 361 KCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK---RMEE 416
KCDL DR + + + + F + E S+K+++ ++ LVD IIC K +E
Sbjct: 136 KCDLEDDRVIPAEDGRKLAEELGF-EFFEASAKDNINVKQVFERLVD-IICEKMNESLEN 193
Query: 417 EAVERKSSIRLSEETLRDD 435
V R + +L+E + +++
Sbjct: 194 GPVPRSGTAQLTESSPKEN 212
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNE---KRVKLQIWD 77
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 64
>gi|195452572|ref|XP_002073412.1| GK13164 [Drosophila willistoni]
gi|194169497|gb|EDW84398.1| GK13164 [Drosophila willistoni]
Length = 213
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 97/173 (56%), Gaps = 10/173 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ TY +L+ GDS VGKT V + K+ D Y +T+G+DF KL++ G P+KLQIW
Sbjct: 6 VATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLIN---LDGVPIKLQIW 62
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+R+ ++ YY+ + G ++M+D+TN +S+ ++ W ++ D + +L
Sbjct: 63 DTAGQERFRTLTTAYYRGAMGILLMYDVTNLESYNNLSYWLRNIQENASPD----VVKVL 118
Query: 358 LASKCDLP--DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+KC+ R V+ E + + M + EVS K ++ IED+ L +I
Sbjct: 119 AGNKCECSATQRMVDKERGEKIAENFE-MPFFEVSCKSNINIEDAFLSLARKI 170
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+Y +L+ GDS VGKT V + K+ D Y +T+G+DF KL++ G P+KLQIWD
Sbjct: 7 ATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLIN---LDGVPIKLQIWD 63
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
D K+LV+GDS VGKT V + K+ D Y +T+G+DF KL++
Sbjct: 4 DFVATYKVLVLGDSNVGKTCIVHRYCDEKYYDTYISTIGIDFKQKLIN 51
>gi|417397209|gb|JAA45638.1| Putative rab subfamily protein of small gtpase [Desmodus rotundus]
Length = 212
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 119/213 (55%), Gaps = 10/213 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + + G V++QIWD A
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI---EVDGIKVRIQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY +++ YY+ + G +++D+++ +S++ +++W D+D + +L+ +
Sbjct: 66 GQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA----PEGVQKILIGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D RQV + + + +Y M + E S+ +L I++S L + ++ + R E + +
Sbjct: 122 KADEEQKRQVGREQGQQLAKEYG-MDFYETSACTNLNIKESFTRLTELVLQAHRKELDGL 180
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
++S L+ L +D+ K P + S CWC
Sbjct: 181 RTRASNELALAELEEDESKPEGPVNS-SKSCWC 212
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + + G V++QIWD
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI---EVDGIKVRIQIWD 63
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ + ++L+IGDS VGKT + F N+F ++ +T+GVDF K +
Sbjct: 6 DVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI 50
>gi|380025950|ref|XP_003696725.1| PREDICTED: ras-related protein Rab-43-like [Apis florea]
Length = 219
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 101/173 (58%), Gaps = 15/173 (8%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK--LLSHKKYGGRPVKLQIWD 298
+ I++ GD GKT VQ F F++ + NT+GVDFS K L+ KK VKLQIWD
Sbjct: 21 FKIVLIGDCGTGKTCVVQRFRSGTFIERHGNTIGVDFSMKTVLIDDKK-----VKLQIWD 75
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
AGQ+R+ +++ YY++++G I+++D+T R +F S+ W ++ + + +L+
Sbjct: 76 TAGQERFRTITQSYYRSANGVIVVYDITKRSTFLSLQHWVEEVRRY----TSSHVLLILV 131
Query: 359 ASKCDLPD-RQVEINEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+KCDL R+VE E EA+C QY + +E S+KE+ I+ +L +
Sbjct: 132 GNKCDLESLREVEKGEAEALC-QYLPEVLQVVETSAKENTNIDSIFFYLASEL 183
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 7/60 (11%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK--LLSHKKYGGRPVKLQIWD 228
+ I++ GD GKT VQ F F++ + NT+GVDFS K L+ KK VKLQIWD
Sbjct: 21 FKIVLIGDCGTGKTCVVQRFRSGTFIERHGNTIGVDFSMKTVLIDDKK-----VKLQIWD 75
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK--LLSHKK 154
+ KI++IGD GKT VQ F F++ + NT+GVDFS K L+ KK
Sbjct: 20 LFKIVLIGDCGTGKTCVVQRFRSGTFIERHGNTIGVDFSMKTVLIDDKK 68
>gi|401413308|ref|XP_003886101.1| hypothetical protein NCLIV_065010 [Neospora caninum Liverpool]
gi|325120521|emb|CBZ56075.1| hypothetical protein NCLIV_065010 [Neospora caninum Liverpool]
Length = 210
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 100/177 (56%), Gaps = 5/177 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + + V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKDVV---IDDKEVTVQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+TN KSFES+ WK + + + P +++ +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTNPKSFESLQSWKEEFLIQSSPADPDSFPFVVVGNKV 127
Query: 363 DLPD-RQVEINEIEAVCHQY-NFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
D + R+V ++ EA C Q N + + E S+K + + + R + ++ +E+
Sbjct: 128 DEREKRRVSSSKAEAFCRQSGNDIPYFETSAKTATNVHLAFEEIAKRAMLQEKQQEQ 184
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
P + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 2 PPKKKALLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + + V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKDVV---IDDKEVTVQIWD 63
>gi|224466272|gb|ACN44178.1| RAS oncogene family protein [Cavia porcellus]
Length = 168
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 99/174 (56%), Gaps = 8/174 (4%)
Query: 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD AG
Sbjct: 1 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTAG 57
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
Q+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN LL+ +K
Sbjct: 58 QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNA---QVLLVGNK 113
Query: 362 CDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
CD+ D +V +E + + E S+K+++ ++ + LVD +IC K E
Sbjct: 114 CDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEKMSE 166
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 2 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 54
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 1 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 41
>gi|281205259|gb|EFA79452.1| hypothetical protein PPL_07870 [Polysphondylium pallidum PN500]
Length = 262
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 98/170 (57%), Gaps = 8/170 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G++ GKTS + + NKF YK T+G+DF K ++ +P+ L +WD+AGQ
Sbjct: 47 ILVIGEAACGKTSIIHKYCLNKFEPKYKVTMGLDFFPKKIT---VDDQPINLALWDVAGQ 103
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTN-RKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
+R+ M R Y++N++G II+FDLT + S +WK LD C D+ +PC+LLA+K
Sbjct: 104 ERFHHMIRSYFKNANGAIIVFDLTRIYHTLNSASKWKLQLDI-CFPDDNP-IPCILLANK 161
Query: 362 CDLPD-RQVEI-NEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
DL D VEI +++ + W S+KE IE +M ++ I+
Sbjct: 162 SDLFDMNDVEIKKQLDEFIAENGIKQWFFTSAKEGFGIEHAMEYIARVIL 211
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
S IL+ G++ GKTS + + NKF YK T+G+DF K ++ +P+ L +WD+
Sbjct: 44 SLKILVIGEAACGKTSIIHKYCLNKFEPKYKVTMGLDFFPKKIT---VDDQPINLALWDV 100
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
LKILVIG++ GKTS + + NKF YK T+G+DF K
Sbjct: 45 LKILVIGEAACGKTSIIHKYCLNKFEPKYKVTMGLDFFPK 84
>gi|308483958|ref|XP_003104180.1| CRE-RAB-35 protein [Caenorhabditis remanei]
gi|308258488|gb|EFP02441.1| CRE-RAB-35 protein [Caenorhabditis remanei]
Length = 209
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 98/172 (56%), Gaps = 8/172 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +NY T+GVDF + + G+ VKLQIWD A
Sbjct: 11 FKLLIIGDSGVGKSSLLLRFADNTFSENYITTIGVDFKIRTMD---INGQRVKLQIWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN +SF +V +W ++++ C + +L+ +
Sbjct: 68 GQERFRTITSTYYRGTHGVVVVYDVTNGESFGNVKRWLQEIENNC-----DSVQKVLVGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KC+ DR+V + Q +++ E S+KE +E + ++ +K
Sbjct: 123 KCEESDRRVVLESDARNYAQSMNIAFFETSAKEDKNVEPMFTCITSLVLTAK 174
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F +NY T+GVDF + + G+ VKLQIWD
Sbjct: 11 FKLLIIGDSGVGKSSLLLRFADNTFSENYITTIGVDFKIRTMD---INGQRVKLQIWD 65
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
D + + K+L+IGDS VGK+S + F N F +NY T+GVDF + +
Sbjct: 6 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSENYITTIGVDFKIRTM 52
>gi|15231462|ref|NP_187397.1| RAB GTPase-like protein A5B [Arabidopsis thaliana]
gi|75337573|sp|Q9SRS5.1|RAA5B_ARATH RecName: Full=Ras-related protein RABA5b; Short=AtRABA5b
gi|6041856|gb|AAF02165.1|AC009853_25 putative GTP-binding protein [Arabidopsis thaliana]
gi|18253019|gb|AAL62436.1| putative GTP-binding protein [Arabidopsis thaliana]
gi|25084141|gb|AAN72184.1| putative GTP-binding protein [Arabidopsis thaliana]
gi|332641018|gb|AEE74539.1| RAB GTPase-like protein A5B [Arabidopsis thaliana]
Length = 217
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 101/170 (59%), Gaps = 9/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGK++ + F +++F N K T+GV+F T+L+ + G+ VK QIWD A
Sbjct: 13 FKIVLIGDSAVGKSNLLSRFSRDEFDTNSKATIGVEFQTQLVEIE---GKEVKAQIWDTA 69
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G +I++D+T +FESV +W +L++ C + +L+ +
Sbjct: 70 GQERFRAVTSAYYRGAFGALIVYDITRGDTFESVKRWLQELNTHC----DTAVAQMLVGN 125
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL D R V + E +A+ + ++E S+ + ++ + ++ I
Sbjct: 126 KCDLEDIRAVSVEEGKALAEEEGLF-FMETSALDATNVDKAFEIVIREIF 174
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD-- 228
+ I++ GDS VGK++ + F +++F N K T+GV+F T+L+ + G+ VK QIWD
Sbjct: 13 FKIVLIGDSAVGKSNLLSRFSRDEFDTNSKATIGVEFQTQLVEIE---GKEVKAQIWDTA 69
Query: 229 ----IYCTLSPIQIPTYPILITGDSTVGKT 254
S + LI D T G T
Sbjct: 70 GQERFRAVTSAYYRGAFGALIVYDITRGDT 99
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 33/45 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KI++IGDS VGK++ + F +++F N K T+GV+F T+L+
Sbjct: 10 EYLFKIVLIGDSAVGKSNLLSRFSRDEFDTNSKATIGVEFQTQLV 54
>gi|112982896|ref|NP_001037576.1| small GTP binding protein RAB8 [Bombyx mori]
gi|95102574|gb|ABF51225.1| small GTP binding protein RAB8 [Bombyx mori]
gi|102993217|gb|ABF71468.1| ras-related GTP-binding protein Rab8 [Bombyx mori]
Length = 210
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 103/179 (57%), Gaps = 9/179 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKTS + F ++ F ++ +T+G+DF + + G+ VKLQIWD A
Sbjct: 9 FKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTID---LDGKKVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ S G ++++D+TN KSFE++ W +++ D + ++L +
Sbjct: 66 GQERFRTITTAYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASAD----VEKMILGN 121
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
KCDL RQV E + +Y + ++E S+K+ L +E + L I ++EA
Sbjct: 122 KCDLDSQRQVSKERGEQLAIEYQ-IKFVETSAKDSLNVEYAFYTLARDIKAKMEKKQEA 179
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKTS + F ++ F ++ +T+G+DF + + G+ VKLQIWD
Sbjct: 9 FKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTID---LDGKKVKLQIWD 63
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS VGKTS + F ++ F ++ +T+G+DF + +
Sbjct: 8 LFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTI 50
>gi|91083485|ref|XP_971858.1| PREDICTED: similar to ras-related protein Rab-8A, putative
[Tribolium castaneum]
Length = 221
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 109/194 (56%), Gaps = 14/194 (7%)
Query: 224 LQIWDIYCTLSPIQIPTY----PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 279
+++W C + TY +L+ GDS VGKT + F ++ F + +T+G+DF
Sbjct: 1 MRVWGSLCLVWQKMAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNTTFISTIGIDFKI 60
Query: 280 KLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKH 339
+ + G+ +KLQIWD AGQ+R+ ++ YY+ + G ++++D+TN KSFE++ W
Sbjct: 61 RTID---LDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIKNWIR 117
Query: 340 DLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398
+++ D + +LL +KC+L + RQV E + +Y + +IE S+K + +E
Sbjct: 118 NIEENASAD----VEKMLLGNKCELEEKRQVSKERGEQLAIEYG-IKFIETSAKASIRVE 172
Query: 399 DSMNFLVDRIICSK 412
++ F + R I +K
Sbjct: 173 EAF-FTLARDIKAK 185
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 167 QTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
+T YL +L+ GDS VGKT + F ++ F + +T+G+DF + + G+ +KL
Sbjct: 16 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNTTFISTIGIDFKIRTID---LDGKKIKL 72
Query: 225 QIWD 228
QIWD
Sbjct: 73 QIWD 76
>gi|157112793|ref|XP_001651875.1| ras-related protein Rab-3C, putative [Aedes aegypti]
gi|108877951|gb|EAT42176.1| AAEL006267-PA [Aedes aegypti]
Length = 219
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 103/177 (58%), Gaps = 12/177 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 21 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWDT 76
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++ YY+ + G I+M+D+TN +SF SV W + + DN + +L+
Sbjct: 77 AGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWVTQIKTYS-WDNAQV---ILVG 132
Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
+KCD+ D R + + + Q + + E S+KE++ +++ LVD IIC K E
Sbjct: 133 NKCDMEDERVISFERGKQLADQLG-VEFFETSAKENVNVKNVFERLVD-IICDKMSE 187
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 21 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWD 75
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKK 154
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K + H K
Sbjct: 20 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK 67
>gi|27469883|gb|AAH41759.1| RAB35 protein, partial [Xenopus laevis]
Length = 227
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 105/174 (60%), Gaps = 10/174 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD A
Sbjct: 35 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWDTA 91
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+ +SF +V +W H+++ C D+ + +L+ +
Sbjct: 92 GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DD---VCRILVGN 146
Query: 361 KCDLPDRQ-VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K D P+R+ VE + Q + + E S+KE+L +E+ N + + ++ +K+
Sbjct: 147 KNDDPERKVVETEDAFKFAGQMD-IQLFETSAKENLNVEEMFNCITELVLRAKK 199
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD
Sbjct: 35 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWD 89
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 89 PSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
P P + D + + K+L+IGDS VGK+S + F N F +Y T+GVDF +
Sbjct: 15 PGPGLPFVQVATMARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIR 74
>gi|255584671|ref|XP_002533058.1| protein with unknown function [Ricinus communis]
gi|223527156|gb|EEF29328.1| protein with unknown function [Ricinus communis]
Length = 218
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 115/211 (54%), Gaps = 30/211 (14%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGK++ + F +N+F N K T+GV+F T+++ + G+ +K QIWD A
Sbjct: 15 FKIVLIGDSAVGKSNLLARFARNEFDSNSKATIGVEFQTQVVDIE---GKEIKAQIWDTA 71
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G +I++D+T R SF+SV +W +L + C D A +L+ +
Sbjct: 72 GQERFRAVTSAYYRGAVGALIVYDITRRSSFDSVKRWLEELSTHC--DTTA--ARMLVGN 127
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKE--HLMIEDSMNFLVDRIICSKRMEE-- 416
KCDL + + EVS +E L E+S+ F+ + S +E
Sbjct: 128 KCDLENIR-------------------EVSREEGKTLAEEESLFFMETSALDSTNVEAAF 168
Query: 417 EAVERKSSIRLSEETLRDDQPKKLVPADKVS 447
E V R+ +S +TL D K + ++VS
Sbjct: 169 EVVIREIYHNMSRKTLNSDSYKAELTVNRVS 199
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGK++ + F +N+F N K T+GV+F T+++ + G+ +K QIWD
Sbjct: 15 FKIVLIGDSAVGKSNLLARFARNEFDSNSKATIGVEFQTQVVDIE---GKEIKAQIWD 69
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 33/45 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KI++IGDS VGK++ + F +N+F N K T+GV+F T+++
Sbjct: 12 EYLFKIVLIGDSAVGKSNLLARFARNEFDSNSKATIGVEFQTQVV 56
>gi|308159460|gb|EFO61990.1| Rab11 [Giardia lamblia P15]
Length = 216
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 5/167 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR-PVKLQIWDI 299
Y +++ GDS VGK++ + F NKF + T+GV+F+TK L+ + G +LQ WD
Sbjct: 9 YKLILIGDSAVGKSNILSRFTSNKFNASSAATIGVEFTTKTLTVEVQGKMISTRLQCWDT 68
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++ YY+ + GC+++FD+T R SFE +W +L + N +L+
Sbjct: 69 AGQERYRSITSSYYRGAHGCLLVFDVTKRTSFEHCTEWLTELRNASA--NSTACKVILVG 126
Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLV 405
+K DL R+V E A Q +S+IE S+ I+D+ LV
Sbjct: 127 NKVDLRHLREVTTEEAAAFAQQQG-LSYIETSASSGHGIDDAFKQLV 172
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR-PVKLQIWD 228
Y +++ GDS VGK++ + F NKF + T+GV+F+TK L+ + G +LQ WD
Sbjct: 9 YKLILIGDSAVGKSNILSRFTSNKFNASSAATIGVEFTTKTLTVEVQGKMISTRLQCWD 67
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
K+++IGDS VGK++ + F NKF + T+GV+F+TK L+
Sbjct: 10 KLILIGDSAVGKSNILSRFTSNKFNASSAATIGVEFTTKTLT 51
>gi|4930237|pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 99/172 (57%), Gaps = 8/172 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 62
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN LL+ +
Sbjct: 63 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNA---QVLLVGN 118
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCD+ D +V +E + + E S+K+++ ++ + LVD +IC K
Sbjct: 119 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEK 169
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 60
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 47
>gi|50540122|ref|NP_001002530.1| ras-related protein Rab-3C [Danio rerio]
gi|49900849|gb|AAH76367.1| RAB3C, member RAS oncogene family [Danio rerio]
gi|182889398|gb|AAI65042.1| Rab3c protein [Danio rerio]
Length = 218
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 102/173 (58%), Gaps = 10/173 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 21 FKLLIIGNSSVGKTSFLFRYADDTFTSAFVSTVGIDFKVKTVYKND---KRIKLQIWDTA 77
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L +
Sbjct: 78 GQERYRTITTAYYRGAMGFILMYDITNEESFAAVQDWATQIKTYS-WDNAQV---ILAGN 133
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCD+ +R V ++ + Q F + E S+K+++ ++ + + LVD IIC K
Sbjct: 134 KCDMEEERIVSVDSGRLLAEQLGF-EFFETSAKDNINVKQTFDRLVD-IICDK 184
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 21 FKLLIIGNSSVGKTSFLFRYADDTFTSAFVSTVGIDFKVKTVYKND---KRIKLQIWD 75
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 20 MFKLLIIGNSSVGKTSFLFRYADDTFTSAFVSTVGIDFKVKTV 62
>gi|196011170|ref|XP_002115449.1| hypothetical protein TRIADDRAFT_29154 [Trichoplax adhaerens]
gi|190582220|gb|EDV22294.1| hypothetical protein TRIADDRAFT_29154 [Trichoplax adhaerens]
Length = 222
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 102/176 (57%), Gaps = 10/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + VKLQIWD A
Sbjct: 26 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVFR---NDKRVKLQIWDTA 82
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN SF +V W + + DN + +L+ +
Sbjct: 83 GQERYRTITTAYYRGAMGFILMYDITNEDSFNAVQDWSTQIKTYS-WDNAQV---VLVGN 138
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD D R V I+ + + Q F + E S+K+++ ++ + LVD IIC K E
Sbjct: 139 KCDREDERVVSIDRGKQLADQLGF-PFFETSAKDNINVKSTFETLVD-IICEKMSE 192
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 25 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTV 67
>gi|27696356|gb|AAH43857.1| Rab3d protein, partial [Xenopus laevis]
Length = 246
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 112/199 (56%), Gaps = 13/199 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD A
Sbjct: 52 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNE---KRVKLQIWDTA 108
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G ++M+D++N +SF +V W + + DN + LL+ +
Sbjct: 109 GQERYRTITTAYYRGAMGFLLMYDISNLESFNAVQDWATQIKTYS-WDNAQV---LLVGN 164
Query: 361 KCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK---RMEE 416
KCDL DR + + + + F + E S+K+++ ++ LVD IIC K +E
Sbjct: 165 KCDLEDDRVIAAEDGRKLAEELGF-EFFEASAKDNINVKQVFERLVD-IICEKMNESLEN 222
Query: 417 EAVERKSSIRLSEETLRDD 435
V + +L+E +D+
Sbjct: 223 GPVPGSGTAQLTESAPKDN 241
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD
Sbjct: 52 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNE---KRVKLQIWD 106
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 51 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 93
>gi|50556440|ref|XP_505628.1| YALI0F19602p [Yarrowia lipolytica]
gi|49651498|emb|CAG78437.1| YALI0F19602p [Yarrowia lipolytica CLIB122]
Length = 205
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 109/223 (48%), Gaps = 21/223 (9%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+ P + ++I GDS VGK+S +Q +V NKF YK T+G DF K L+ + GR V
Sbjct: 1 MPPKKRTMLKVVILGDSGVGKSSLMQQYVNNKFSTQYKATIGADFLNKELTLE---GRKV 57
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
+QIWD AGQ+R+ + +Y+ +D C++++D+ N KSF+++ W+ + +
Sbjct: 58 NMQIWDTAGQERFQSLGLAFYRGADCCVLVYDVNNSKSFDALTLWRDEFLLLANPRDPEN 117
Query: 353 LPCLLLASKCDLPD--RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
P +++ +K D+ + R V +A C + + E S+KE ++ +
Sbjct: 118 FPFVVIGNKVDVEESKRAVSAKRAQAFCKATGNIPYFETSAKEDTGVDQAF--------- 168
Query: 411 SKRMEEEAVERKSSIRLSEETLRDDQPKKL-VPADKVSTYCWC 452
E V R + ++ E DD + + D + C C
Sbjct: 169 ------ETVARNAMAQVDSEDYTDDFADTINIHLDNEQSNCAC 205
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGK+S +Q +V NKF YK T+G DF K L+ + GR V +QIWD
Sbjct: 11 VVILGDSGVGKSSLMQQYVNNKFSTQYKATIGADFLNKELTLE---GRKVNMQIWD 63
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P T+LK++++GDS VGK+S +Q +V NKF YK T+G DF K L+
Sbjct: 2 PPKKRTMLKVVILGDSGVGKSSLMQQYVNNKFSTQYKATIGADFLNKELT 51
>gi|345480659|ref|XP_003424189.1| PREDICTED: ras-related protein Rab-8A-like isoform 2 [Nasonia
vitripennis]
Length = 210
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 117/204 (57%), Gaps = 11/204 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F ++ F + +T+G+DF + + + G+ +KLQIWD A
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNTTFISTIGIDFKIRTI---ELDGKKIKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSFE++ W +++ D + +LL +
Sbjct: 66 GQERFRTITTAYYRGAMGIMLVYDVTNEKSFENIKNWIRNIEENASAD----VEKMLLGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KC+L RQV EA+ +Y + ++E S+K + +E++ F + R I +K ME+
Sbjct: 122 KCELTSKRQVSKERGEALAIEYG-IKFMETSAKSSINVEEAF-FTLARDIKAK-MEKRLK 178
Query: 420 ERKSSIRLSEETLRDDQPKKLVPA 443
E + + L+ +P++ P+
Sbjct: 179 EASNPPKGGGHQLKAMEPQRKPPS 202
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 167 QTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
+T YL +L+ GDS VGKT + F ++ F + +T+G+DF + + + G+ +KL
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNTTFISTIGIDFKIRTI---ELDGKKIKL 59
Query: 225 QIWD 228
QIWD
Sbjct: 60 QIWD 63
>gi|410918873|ref|XP_003972909.1| PREDICTED: uncharacterized protein LOC101079538 [Takifugu rubripes]
Length = 799
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 113/194 (58%), Gaps = 14/194 (7%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ G+S+VGKTS ++ F + +F + TVG+D+S K L+ V +Q+WD A
Sbjct: 613 FKVVLVGNSSVGKTSLLRSFCEGRFHPSTTATVGIDYSVKTLT---LDNMQVAMQLWDTA 669
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY +++ +++ +DG ++M+D+T +SF +V W ++ G +P LLL +
Sbjct: 670 GQERYCSITKQFFRKADGVVVMYDVTVEESFRAVKPWLANVQEAA----GEGIPILLLGN 725
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D+ + RQV + E E + Q N + + EVS+ + +S+ L R++ ME+E
Sbjct: 726 KMDMDESRQVPVKEAEKLA-QENRVMFSEVSAYTSRNVTESLTHLA-RVL----MEQEDR 779
Query: 420 ERKSSIRLSEETLR 433
R +++ LS + ++
Sbjct: 780 VRDTTVVLSAQPIK 793
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 17/92 (18%)
Query: 157 GRPYG-------TFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 207
GRP G T + P L +++ G+S+VGKTS ++ F + +F + TVG+D+
Sbjct: 590 GRPVGKEAHQKATEGALFAPDRLFKVVLVGNSSVGKTSLLRSFCEGRFHPSTTATVGIDY 649
Query: 208 STKLLSHKKYGGRPVKLQIWDI-----YCTLS 234
S K L+ V +Q+WD YC+++
Sbjct: 650 SVKTLT---LDNMQVAMQLWDTAGQERYCSIT 678
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 32/44 (72%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ K++++G+S+VGKTS ++ F + +F + TVG+D+S K L+
Sbjct: 612 LFKVVLVGNSSVGKTSLLRSFCEGRFHPSTTATVGIDYSVKTLT 655
>gi|68534613|gb|AAH99268.1| RAB35 protein, partial [Xenopus laevis]
Length = 233
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 105/174 (60%), Gaps = 10/174 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD A
Sbjct: 41 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWDTA 97
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+ +SF +V +W H+++ C D+ + +L+ +
Sbjct: 98 GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DD---VCRILVGN 152
Query: 361 KCDLPDRQ-VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K D P+R+ VE + Q + + E S+KE+L +E+ N + + ++ +K+
Sbjct: 153 KNDDPERKVVETEDAFKFAGQMD-IQLFETSAKENLNVEEMFNCITELVLRAKK 205
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD
Sbjct: 41 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWD 95
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 89 PSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
P P + D + + K+L+IGDS VGK+S + F N F +Y T+GVDF +
Sbjct: 21 PGPGLPFVQVATMARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIR 80
>gi|170049010|ref|XP_001853751.1| GTP-binding protein Rab-3D [Culex quinquefasciatus]
gi|167870968|gb|EDS34351.1| GTP-binding protein Rab-3D [Culex quinquefasciatus]
Length = 219
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 103/177 (58%), Gaps = 12/177 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 21 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWDT 76
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++ YY+ + G I+M+D+TN +SF SV W + + DN + +L+
Sbjct: 77 AGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWVTQIKTYS-WDNAQV---ILVG 132
Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
+KCD+ D R + + + Q + + E S+KE++ +++ LVD IIC K E
Sbjct: 133 NKCDMEDERVISFERGKQLADQLG-VEFFETSAKENVNVKNVFERLVD-IICDKMSE 187
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 21 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWD 75
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKK 154
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K + H K
Sbjct: 20 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK 67
>gi|224071962|ref|XP_002199537.1| PREDICTED: ras-related protein Rab-35 [Taeniopygia guttata]
Length = 201
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 105/178 (58%), Gaps = 18/178 (10%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+ +SF +V +W H+++ C D+ + +L+ +
Sbjct: 66 GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DD---VCRILVGN 120
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEV-----SSKEHLMIEDSMNFLVDRIICSKR 413
K D PDR+V E Y F +E+ S+KE++ +E+ N + + ++ +K+
Sbjct: 121 KNDDPDRKVVETE-----DAYKFAGQMEIQLFETSAKENINVEEMFNCITELVLRAKK 173
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWD 63
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
D + + K+L+IGDS VGK+S + F N F +Y T+GVDF +
Sbjct: 2 ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIR 48
>gi|346987769|gb|AEO51738.1| Rab8 [Helicoverpa armigera]
Length = 203
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 97/162 (59%), Gaps = 9/162 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKTS + F ++ F ++ +T+G+DF + + G+ VKLQIWD A
Sbjct: 9 FKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTID---LDGKKVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ S G ++++D+TN KSFE++ W +++ D + ++L +
Sbjct: 66 GQERFRTITTAYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASAD----VEKMILGN 121
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
KCDL RQV E + +Y + +IE S+K+ L +E +
Sbjct: 122 KCDLEAKRQVSKERGEQLAVEYQ-IKFIETSAKDSLNVESAF 162
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 5/64 (7%)
Query: 167 QTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
+T YL +L+ GDS VGKTS + F ++ F ++ +T+G+DF + + G+ VKL
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTID---LDGKKVKL 59
Query: 225 QIWD 228
QIWD
Sbjct: 60 QIWD 63
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS VGKTS + F ++ F ++ +T+G+DF + +
Sbjct: 8 LFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTI 50
>gi|193615541|ref|XP_001951463.1| PREDICTED: ras-related protein Rab-10-like [Acyrthosiphon pisum]
Length = 200
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 103/170 (60%), Gaps = 9/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTTTFISTIGIDFKIKTVELQ---GKKIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSFE++V+W +++ D + ++L +
Sbjct: 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNINEHANED----VEKMILGN 122
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCD+ D R V + E + ++N +S++E S+K ++ IE + L I+
Sbjct: 123 KCDMDDKRVVGKSRGEGIAREHN-ISFLETSAKANINIEKAFTDLTLSIL 171
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTTTFISTIGIDFKIKTVELQ---GKKIKLQIWD 64
>gi|448523590|ref|XP_003868901.1| Ypt72 GTPase [Candida orthopsilosis Co 90-125]
gi|380353241|emb|CCG25997.1| Ypt72 GTPase [Candida orthopsilosis]
Length = 211
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 77/126 (61%), Gaps = 2/126 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ GDS VGKTS + FV NKF YK T+G DF TK ++ GG+ V LQIWD AGQ
Sbjct: 9 IIVVGDSGVGKTSLMHQFVNNKFSQQYKATIGADFLTKEITLD--GGKTVTLQIWDTAGQ 66
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++ FD+TN KS ++ WK + + + N P +++ +K
Sbjct: 67 ERFQSLGVAFYRGADCCVLCFDVTNEKSLNNLTSWKDEFLVQSNVSNPQDFPFVIIGNKI 126
Query: 363 DLPDRQ 368
D+ D +
Sbjct: 127 DVDDSK 132
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
I++ GDS VGKTS + FV NKF YK T+G DF TK ++ GG+ V LQIWD
Sbjct: 9 IIVVGDSGVGKTSLMHQFVNNKFSQQYKATIGADFLTKEITLD--GGKTVTLQIWD 62
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+LKI+V+GDS VGKTS + FV NKF YK T+G DF TK ++
Sbjct: 6 LLKIIVVGDSGVGKTSLMHQFVNNKFSQQYKATIGADFLTKEIT 49
>gi|7689363|gb|AAF67748.1| GTP-binding protein RAB3A [Homo sapiens]
Length = 220
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KKIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E + + E S+K+++ ++ + L D +IC K E
Sbjct: 136 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLED-VICEKMSE 189
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KKIKLQIWD 77
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 13 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 64
>gi|156553809|ref|XP_001603302.1| PREDICTED: ras-related protein Rab-35-like [Nasonia vitripennis]
Length = 202
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 106/193 (54%), Gaps = 9/193 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F NY T+GVDF + + G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFNGNYITTIGVDFKIRTVD---VDGERVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+ SF +V +W H+++ C ++ +L+ +
Sbjct: 66 GQERFRTITSTYYRGTHGVIVVYDVTSGDSFANVKRWLHEIEHNC----DVVVNRILVGN 121
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR--MEEEA 418
K D P+++V + E + E S+K++ +E+ + ++ +K+ E +A
Sbjct: 122 KNDAPNQKVVLTEDAQRFANQMGIKLFETSAKDNTNVEEMFMAITREVLRTKKESKERQA 181
Query: 419 VERKSSIRLSEET 431
+ ++ L + T
Sbjct: 182 TKTNETVNLRKST 194
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F NY T+GVDF + + G VKLQIWD
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFNGNYITTIGVDFKIRTVD---VDGERVKLQIWD 63
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
D + + K+L+IGDS VGK+S + F N F NY T+GVDF + +
Sbjct: 2 ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFNGNYITTIGVDFKIRTV 50
>gi|346472349|gb|AEO36019.1| hypothetical protein [Amblyomma maculatum]
Length = 200
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 113/213 (53%), Gaps = 25/213 (11%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F + F + +T+G+DF K + K G+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFHTTFISTIGIDFKIKTIELK---GKKIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSF+++ +W +D D + ++L +
Sbjct: 67 GQERFHTITTSYYRGAMGIMLVYDITNTKSFDNIAKWLRYIDEHANED----VEKMILGN 122
Query: 361 KCDLPDRQV---EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
KCD+ D+++ E E A+ H FM E S+K ++ IE + L + I+ + ++
Sbjct: 123 KCDMEDKRLISRERGEAVAIDHNIRFM---ETSAKTNVNIERAFTELAEAILNKQMAGKD 179
Query: 418 AVERKSSIRLSEETLRDDQPKKLVPADKVSTYC 450
E + D+ K L P KV C
Sbjct: 180 QAENQ------------DRLKVLPPEKKVMNCC 200
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F + F + +T+G+DF K + K G+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFHTTFISTIGIDFKIKTIELK---GKKIKLQIWD 64
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 153
+ + K+L+IGDS VGKT + F + F + +T+G+DF K + K
Sbjct: 7 DLLFKLLLIGDSGVGKTCILFRFSDDAFHTTFISTIGIDFKIKTIELK 54
>gi|425772158|gb|EKV10572.1| Rab small monomeric GTPase Rab7, putative [Penicillium digitatum
Pd1]
gi|425777445|gb|EKV15619.1| Rab small monomeric GTPase Rab7, putative [Penicillium digitatum
PHI26]
Length = 205
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 104/194 (53%), Gaps = 5/194 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF +YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSGSYKATIGADFLTKEV---LVDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+ N KSFE++ W+ + + + P +++ +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVNNSKSFEALDSWRDEFLIQASPRDPETFPFVVIGNKI 127
Query: 363 DLPDRQVEINEIEAV--CHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
D+ + + I+ A+ CH + + E S+KE + +E + + + + EE + E
Sbjct: 128 DVEENKRMISSKRAMTFCHSKGNIPYFETSAKEAVNVEQAFEVIARSALAQEEAEEFSGE 187
Query: 421 RKSSIRLSEETLRD 434
I + + RD
Sbjct: 188 FSDPINIHLDNDRD 201
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF +YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSGSYKATIGADFLTKEV---LVDDRLVTMQIWD 63
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF +YK T+G DF TK
Sbjct: 2 ASRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSGSYKATIGADFLTK 48
>gi|322794138|gb|EFZ17347.1| hypothetical protein SINV_09491 [Solenopsis invicta]
Length = 207
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 95/164 (57%), Gaps = 9/164 (5%)
Query: 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
TY +L+ GDS VGKT V + ++ D Y +T+G+DF K+++ G P+KLQIWD
Sbjct: 7 ATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIIN---LDGTPIKLQIWD 63
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
AGQ+R+ ++ YY+ + G ++M+D+T+ +SF + W ++ D + +L
Sbjct: 64 TAGQERFRTLTTAYYRGAMGILLMYDVTSLESFNHLSYWLRNIQENASPD----VVKVLA 119
Query: 359 ASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
A+KCD R V+ + + ++ M + EVS KE++ IE++
Sbjct: 120 ANKCDATAQRAVDAERGQKIAENFD-MPFFEVSCKENINIEEAF 162
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 168 TPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 227
+Y +L+ GDS VGKT V + ++ D Y +T+G+DF K+++ G P+KLQIW
Sbjct: 6 AATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIIN---LDGTPIKLQIW 62
Query: 228 D 228
D
Sbjct: 63 D 63
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
D K+LV+GDS VGKT V + ++ D Y +T+G+DF K+++
Sbjct: 4 DFAATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIIN 51
>gi|158256738|dbj|BAF84342.1| unnamed protein product [Homo sapiens]
Length = 219
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 99/172 (57%), Gaps = 8/172 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD A
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHE---KRVKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN ++P + +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQVIP---VGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCD+ + +V E + + + E S+KE++ + + LVD IC K
Sbjct: 136 KCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVD-AICDK 186
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHE---KRVKLQIWD 77
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKK 154
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K + H+K
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK 69
>gi|300174998|emb|CBK20309.2| unnamed protein product [Blastocystis hominis]
Length = 183
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 102/169 (60%), Gaps = 9/169 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GDS VGKT+ + F ++F + K TVGV+FS K + K +K QIWD A
Sbjct: 18 FVVVLIGDSNVGKTNILSRFANDEFNLDSKATVGVEFSAKCV---KVNNSIIKAQIWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G ++++D+T+R SFE+V W +L +G M+ +L+ +
Sbjct: 75 GQERYRSITSAYYRGAVGALMVYDITSRSSFENVEGWLSELRQHS---DGDMV-VVLIGN 130
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
KCDL + R + +E A ++N M++IE S+ E I+++ ++ R+
Sbjct: 131 KCDLANQRSISTDEARAYAEKHN-MAFIETSAYERTGIDEAFTMVLKRL 178
Score = 38.1 bits (87), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 111 ILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+++IGDS VGKT+ + F ++F + K TVGV+FS K
Sbjct: 20 VVLIGDSNVGKTNILSRFANDEFNLDSKATVGVEFSAK 57
>gi|126305656|ref|XP_001362429.1| PREDICTED: ras-related protein Rab-3B-like [Monodelphis domestica]
Length = 220
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 98/175 (56%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD A
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRNE---KRVKLQIWDTA 80
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+ N +SF +V W + + DN + +L+ +
Sbjct: 81 GQERYRTITTAYYRGAMGFILMYDIANEESFNAVQDWATQIKTYS-WDNAQV---ILVGN 136
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V E + + E S+KE++ + LVD +IC K E
Sbjct: 137 KCDMEDERVVPTEKGKFLAEQLGFDFFEASAKENICVRQVFERLVD-VICDKMSE 190
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTV 65
>gi|46249671|gb|AAH68969.1| RAB35 protein, partial [Xenopus laevis]
Length = 231
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 105/174 (60%), Gaps = 10/174 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD A
Sbjct: 39 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWDTA 95
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+ +SF +V +W H+++ C D+ + +L+ +
Sbjct: 96 GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DD---VCRILVGN 150
Query: 361 KCDLPDRQ-VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K D P+R+ VE + Q + + E S+KE+L +E+ N + + ++ +K+
Sbjct: 151 KNDDPERKVVETEDAFKFAGQMD-IQLFETSAKENLNVEEMFNCITELVLRAKK 203
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD
Sbjct: 39 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWD 93
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 89 PSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
P P + D + + K+L+IGDS VGK+S + F N F +Y T+GVDF +
Sbjct: 19 PGPGLPFVQVATMARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIR 78
>gi|145516685|ref|XP_001444231.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74834389|emb|CAI44532.1| rab_B33 [Paramecium tetraurelia]
gi|124411642|emb|CAK76834.1| unnamed protein product [Paramecium tetraurelia]
Length = 204
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 100/172 (58%), Gaps = 12/172 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y I+I G+S VGK+S + F ++F D Y +T+GVDF K L + G+ VKLQIWD A
Sbjct: 6 YKIVIVGNSAVGKSSLLIRFCDDQFRDMYLSTIGVDFRFKSL---RVNGQGVKLQIWDTA 62
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLA 359
GQ+R+ ++ YY+ + G ++++D+TN KSFE + + W ++L+ D +L +LL
Sbjct: 63 GQERFRNITNSYYKGAQGIVVVYDITNLKSFEDIRKYWMNELNHYA--DENVLL--MLLG 118
Query: 360 SKCDLP---DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+K DL RQV E + +YN + + EVS+K +E + +I
Sbjct: 119 NKSDLATDESRQVTTAMAEEMAKEYN-LKFFEVSAKTSDQVEAAFQAFTQQI 169
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
Y I+I G+S VGK+S + F ++F D Y +T+GVDF K L + G+ VKLQIWD
Sbjct: 6 YKIVIVGNSAVGKSSLLIRFCDDQFRDMYLSTIGVDFRFKSL---RVNGQGVKLQIWD 60
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KI+++G+S VGK+S + F ++F D Y +T+GVDF K L
Sbjct: 3 EQLYKIVIVGNSAVGKSSLLIRFCDDQFRDMYLSTIGVDFRFKSL 47
>gi|85001291|ref|XP_955364.1| Ras-related gtpase [Theileria annulata strain Ankara]
gi|65303510|emb|CAI75888.1| Ras-related gtpase, putative [Theileria annulata]
Length = 215
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 99/176 (56%), Gaps = 4/176 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I+I GDS VGKTS + F+ +F + Y+ T+G DF T ++ + V LQIWD AGQ
Sbjct: 10 IIILGDSGVGKTSLMNQFINKRFTNQYRATIGADFLTMEMT---VDDKEVTLQIWDTAGQ 66
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + + +Y+ +D C++++D TN+K+FES+ WK + + + P L+ +K
Sbjct: 67 ERFQSLGKAFYRGADCCMLVYDTTNQKTFESIESWKSEFLIQVDPKDPDSFPFALIGNKI 126
Query: 363 -DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
D+ +++V N+ + C N + E S+K L + ++ N + + I ++E
Sbjct: 127 DDVENKKVSTNKALSWCKANNDIPHFETSAKTSLNVANAFNEIAKKAILRDIQDDE 182
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
I+I GDS VGKTS + F+ +F + Y+ T+G DF T ++ + V LQIWD
Sbjct: 10 IIILGDSGVGKTSLMNQFINKRFTNQYRATIGADFLTMEMT---VDDKEVTLQIWD 62
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147
+++LKI+++GDS VGKTS + F+ +F + Y+ T+G DF T
Sbjct: 5 KSILKIIILGDSGVGKTSLMNQFINKRFTNQYRATIGADFLT 46
>gi|345484022|ref|XP_001599973.2| PREDICTED: ras-related protein Rab-3-like [Nasonia vitripennis]
Length = 256
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + VKLQIWD A
Sbjct: 55 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR---NDKRVKLQIWDTA 111
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF SV W + + DN + +L+ +
Sbjct: 112 GQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWLTQIKTYS-WDNAQI---ILVGN 167
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V E ++ + + E S+KE+ ++ LVD IIC K E
Sbjct: 168 KCDMEDERVISFERGKQLAEHLKVQFFETSAKENTNVKAVFETLVD-IICDKMSE 221
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + VKLQIWD
Sbjct: 55 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR---NDKRVKLQIWD 109
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 54 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 96
>gi|401426815|ref|XP_003877891.1| putative ras-related rab-4 [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322494138|emb|CBZ29435.1| putative ras-related rab-4 [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 203
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 16/192 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GDS VGK+ + F+++ F D T+G+++ K++ GG VKLQIWD AGQ
Sbjct: 11 LIVIGDSGVGKSCLLHRFIEDTFSDEQTQTIGIEYGAKII---DLGGAKVKLQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+RY ++R YY+ + GC+I++D+ NR S+ESV QW D+ G+ + +L+ +K
Sbjct: 68 ERYKSVTRSYYRGATGCLIVYDVNNRSSYESVPQWLSDVRQLA----GSDVVVMLIGNKI 123
Query: 363 DLPD----RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
DL R V+ NE Q + + E S+ + ++ FL R+ S A
Sbjct: 124 DLAKGNSVRAVQHNEASLYAQQNGLLHF-ETSAATGEFVSEA--FL--RVAKSAVSLASA 178
Query: 419 VERKSSIRLSEE 430
E +S +LS++
Sbjct: 179 AEPESEAQLSQD 190
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ GDS VGK+ + F+++ F D T+G+++ K++ GG VKLQIWD
Sbjct: 11 LIVIGDSGVGKSCLLHRFIEDTFSDEQTQTIGIEYGAKII---DLGGAKVKLQIWD 63
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 31/45 (68%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ +LK++VIGDS VGK+ + F+++ F D T+G+++ K++
Sbjct: 6 QQLLKLIVIGDSGVGKSCLLHRFIEDTFSDEQTQTIGIEYGAKII 50
>gi|50978606|dbj|BAD34970.1| EhRab7C protein [Entamoeba histolytica]
gi|449708719|gb|EMD48124.1| EhRab7C protein, putative [Entamoeba histolytica KU27]
Length = 207
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 95/176 (53%), Gaps = 5/176 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GDS VGK+S + F+ F YK T+G DF TK + G V LQ+WD AG
Sbjct: 11 MILIGDSAVGKSSLMNQFINKSFTAQYKATIGADFLTKEID---VDGESVALQVWDTAGH 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
++++ + +Y+ SD C ++FD+TN +SF+S+ WK+D S N P +++ +K
Sbjct: 68 EKFMSFGQAFYRGSDCCFLVFDVTNEQSFQSLDTWKNDFLSGANPTNATNFPFVVMGNKV 127
Query: 363 --DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
D R V + + C + + E S+K L +E++ + +++ + + E+
Sbjct: 128 DEDAAKRVVTNEQAKDWCENNGDIPYYETSAKSGLNVEEAFLTVARKVVKTMKKED 183
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 165 PIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
P +T +ILI GDS VGK+S + F+ F YK T+G DF TK + G V L
Sbjct: 4 PKKTLLKMILI-GDSAVGKSSLMNQFINKSFTAQYKATIGADFLTKEID---VDGESVAL 59
Query: 225 QIWD 228
Q+WD
Sbjct: 60 QVWD 63
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+T+LK+++IGDS VGK+S + F+ F YK T+G DF TK
Sbjct: 6 KTLLKMILIGDSAVGKSSLMNQFINKSFTAQYKATIGADFLTK 48
>gi|270013048|gb|EFA09496.1| hypothetical protein TcasGA2_TC010990 [Tribolium castaneum]
Length = 297
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 100/173 (57%), Gaps = 10/173 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 99 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWDT 154
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++ YY+ + G I+M+D+TN +SF SV W + + DN + +L+
Sbjct: 155 AGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWVTQIKTYS-WDNAQV---ILVG 210
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
+KCD+ D +V E + + + E S+KE++ ++ LVD IIC K
Sbjct: 211 NKCDMEDERVISFERGKQLAEQLGVEFFETSAKENINVKAVFERLVD-IICDK 262
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 99 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWD 153
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKK 154
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K + H K
Sbjct: 98 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK 145
>gi|225719394|gb|ACO15543.1| Ras-related protein Rab-18 [Caligus clemensi]
Length = 212
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 100/172 (58%), Gaps = 6/172 (3%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ + +LI G+S VGK+S F ++ F + T+GVDF K ++ + G VKL IW
Sbjct: 9 LTSLKLLIIGESCVGKSSLQLRFTEDAFDPEHSATIGVDFKVKTITVQ---GNRVKLAIW 65
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+R+ ++ YY+ G I+++D+TNR SF +V W ++LD+ + + + +L
Sbjct: 66 DTAGQERFRTLTPSYYRGGQGAILVYDVTNRDSFSNVENWLNELDTYATIHD---IVKML 122
Query: 358 LASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+ +KCDL +++V E C + + M +IE S+K ++ + LV+ II
Sbjct: 123 VGNKCDLEEKRVISKEEGQKCARKHRMMFIEASAKTREGVQLAFEELVENII 174
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
T LK+L+IG+S VGK+S F ++ F + T+GVDF K ++
Sbjct: 10 TSLKLLIIGESCVGKSSLQLRFTEDAFDPEHSATIGVDFKVKTIT 54
>gi|255549670|ref|XP_002515886.1| protein with unknown function [Ricinus communis]
gi|223544791|gb|EEF46306.1| protein with unknown function [Ricinus communis]
Length = 219
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 102/177 (57%), Gaps = 9/177 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGK+ + F + ++++Y +T+GVDF + + G+ +KLQIWD A
Sbjct: 25 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD---GKTIKLQIWDTA 81
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G II+FD+T+ +SF +V W ++D K DN + LL+ +
Sbjct: 82 GQERFRTITSSYYRGAHGIIIVFDVTDEESFRNVKGWLTEID-KFATDN---INKLLVGN 137
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
KCD+ +++V NE + ++E S+K +ED+ + I KRM +
Sbjct: 138 KCDVTNKRVVSNETAKAFADEIGIPFLETSAKNATNVEDAFMTMAAEI--KKRMASQ 192
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGK+ + F + ++++Y +T+GVDF + + G+ +KLQIWD
Sbjct: 25 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD---GKTIKLQIWD 79
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 30/45 (66%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152
+ K+L+IGDS VGK+ + F + ++++Y +T+GVDF + +
Sbjct: 24 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQ 68
>gi|18543235|ref|NP_569921.1| Rab27, isoform C [Drosophila melanogaster]
gi|16768612|gb|AAL28525.1| GM10914p [Drosophila melanogaster]
gi|22831493|gb|AAF45634.2| Rab27, isoform C [Drosophila melanogaster]
gi|28317210|gb|AAO39612.1| GH17339p [Drosophila melanogaster]
gi|40788406|dbj|BAD07036.1| Rab27 [Drosophila melanogaster]
gi|220953266|gb|ACL89176.1| Rab27-PC [synthetic construct]
Length = 230
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 114/205 (55%), Gaps = 12/205 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDIAG 301
L+ GDS VGKT + + +F + +TVG+DF K L + G R + LQIWD AG
Sbjct: 14 FLVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFREKRLLYNSRGRRHRIHLQIWDTAG 73
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
Q+R+ ++ +Y+++ G +++FDLT+ KSF W L + ++ ++ C +K
Sbjct: 74 QERFRSLTTAFYRDAMGFLLIFDLTSEKSFLETANWLSQLRTHAYSEDPDVVLC---GNK 130
Query: 362 CDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
CDL R V +++ A+C +Y + +IE S+ +++++ LV R++ +R+E A
Sbjct: 131 CDLLQLRVVSRDQVAALCRRYR-LPYIETSACTGANVKEAVELLVGRVM--ERIENAACN 187
Query: 421 RKSSIRLSEE----TLRDDQPKKLV 441
R+ S+ L++ + QP+ LV
Sbjct: 188 REFSLLLTQSRCLPNIAYGQPEDLV 212
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWD 228
L+ GDS VGKT + + +F + +TVG+DF K L + G R + LQIWD
Sbjct: 14 FLVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFREKRLLYNSRGRRHRIHLQIWD 70
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR 158
D + +LK LV+GDS VGKT + + +F + +TVG+DF K L + G R
Sbjct: 7 DYDYLLKFLVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFREKRLLYNSRGRR 61
>gi|354548148|emb|CCE44884.1| hypothetical protein CPAR2_406870 [Candida parapsilosis]
Length = 210
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 77/126 (61%), Gaps = 2/126 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GDS VGKTS + FV NKF YK T+G DF TK ++ GG+ V LQIWD AGQ
Sbjct: 8 VIVVGDSGVGKTSLMHQFVNNKFSQQYKATIGADFLTKEITLD--GGKKVTLQIWDTAGQ 65
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++ FD+TN KS ++ WK + + + N P +++ +K
Sbjct: 66 ERFQSLGVAFYRGADCCVLCFDVTNEKSLNNLTSWKDEFLVQSNVSNPQDFPFIIIGNKI 125
Query: 363 DLPDRQ 368
D+ D +
Sbjct: 126 DVDDSK 131
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 168 TPSYL-ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
+P L +++ GDS VGKTS + FV NKF YK T+G DF TK ++ GG+ V LQI
Sbjct: 2 SPKLLKVIVVGDSGVGKTSLMHQFVNNKFSQQYKATIGADFLTKEITLD--GGKKVTLQI 59
Query: 227 WD 228
WD
Sbjct: 60 WD 61
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+LK++V+GDS VGKTS + FV NKF YK T+G DF TK ++
Sbjct: 5 LLKVIVVGDSGVGKTSLMHQFVNNKFSQQYKATIGADFLTKEIT 48
>gi|123419727|ref|XP_001305617.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|62736252|gb|AAX97455.1| small Rab GTPase Rab7c [Trichomonas vaginalis]
gi|121887146|gb|EAX92687.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 202
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 4/151 (2%)
Query: 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
+L GD+ GKT + +V +F +YK T+G DF++K + + G+ V LQIWD AG
Sbjct: 10 KVLFLGDTGAGKTCLLNQYVSREFSSDYKVTIGSDFTSKQV---EIDGKFVTLQIWDTAG 66
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
Q+R+ + +++ +D I+++D+TN KSFE++ +WK+D + L + P LLL +K
Sbjct: 67 QERFQSLGSTFFRGTDCLILVYDVTNAKSFENINKWKNDFVRQLELKQDSNFPFLLLGNK 126
Query: 362 CDLPDRQVEINEIEAVCHQYNFMSWIEVSSK 392
CD+ ++ V+ + Q N M + EVS+K
Sbjct: 127 CDIQNKVVQASAAREYA-QMNGMIFHEVSAK 156
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+L GD+ GKT + +V +F +YK T+G DF++K + + G+ V LQIWD
Sbjct: 11 VLFLGDTGAGKTCLLNQYVSREFSSDYKVTIGSDFTSKQV---EIDGKFVTLQIWD 63
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S A T+LK+L +GD+ GKT + +V +F +YK T+G DF++K
Sbjct: 2 ASRARTMLKVLFLGDTGAGKTCLLNQYVSREFSSDYKVTIGSDFTSK 48
>gi|47211718|emb|CAF95873.1| unnamed protein product [Tetraodon nigroviridis]
Length = 182
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 96/171 (56%), Gaps = 8/171 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT VQ F F++ +NT+GVDF+ + + G+ VK+Q+WD A
Sbjct: 16 FKIILVGDSNVGKTCVVQSFKSGIFMEKQQNTIGVDFTVRTID---IDGKKVKMQVWDTA 72
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ G ++ +D+T R +FESV W +++ + + +L+ +
Sbjct: 73 GQERFRTITQSYYRSAHGAMVAYDITRRSTFESVSHWIREVEHY----GASSVVLILIGN 128
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
K DL RQV + + ++ +E S+KE +E + + ++
Sbjct: 129 KSDLQAQRQVLFEDACTLAESNGVLAVLETSAKEAQNVEAAFTLMARELLA 179
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT VQ F F++ +NT+GVDF+ + + G+ VK+Q+WD
Sbjct: 16 FKIILVGDSNVGKTCVVQSFKSGIFMEKQQNTIGVDFTVRTID---IDGKKVKMQVWD 70
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 100 PRPSDA-ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P D+ + + KI+++GDS VGKT VQ F F++ +NT+GVDF+ + +
Sbjct: 6 PEVEDSFDFLFKIILVGDSNVGKTCVVQSFKSGIFMEKQQNTIGVDFTVRTI 57
>gi|326432764|gb|EGD78334.1| Rab7 GTPase [Salpingoeca sp. ATCC 50818]
Length = 206
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 107/198 (54%), Gaps = 10/198 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK ++ R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVT---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +SFES+ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTVPRSFESLEAWRDEFLIQASPRDPEHFPFVVLGNKV 127
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
DL D R + N ++ C + + + E S+KE +E + + + ++ E+ +
Sbjct: 128 DLKDNRAITENRAKSWCDEKGNIPYFETSAKEATKVETAFLTIARAALQQEKDEDIYHDF 187
Query: 422 KSSIRLSEETLRDDQPKK 439
K ++ L DD P K
Sbjct: 188 KDAVNL------DDVPDK 199
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK ++ R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVT---VDDRLVTMQIWD 63
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 6 KVLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTK 48
>gi|307176945|gb|EFN66251.1| Ras-related protein Rab-3 [Camponotus floridanus]
Length = 258
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 102/176 (57%), Gaps = 10/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 57 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWDT 112
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++ YY+ + G I+M+D+TN +SF SV W + + DN + +L+
Sbjct: 113 AGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKNYS-WDNAQV---ILVG 168
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
+KCD+ + +V +E + + + E S+KE++ ++ LVD IIC K E
Sbjct: 169 NKCDMEEERVISSERGKQLAEQLGVRFFETSAKENINVKAVFETLVD-IICDKMSE 223
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 157 GRPYGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLS 213
R G + Q Y+ +LI G+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 41 ARQDGRDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR 100
Query: 214 HKKYGGRPVKLQIWD 228
H K VKLQIWD
Sbjct: 101 HDK----RVKLQIWD 111
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 97 GFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKK 154
G + + + + K+L+IG+S+VGKTS++ + + F + +TVG+DF K + H K
Sbjct: 45 GRDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK 103
>gi|397776464|gb|AFO64930.1| Rab3 [Ruditapes philippinarum]
Length = 219
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD A
Sbjct: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRQD---KRVKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 79 GQERYRTITTAYYRGAMGFILMYDVTNEESFNAVQDWCTQIKTYS-WDNAQV---VLVGN 134
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCDL D +V E + + E S+KE++ ++ LVD IIC K E
Sbjct: 135 KCDLEDERVVSTERGKQLADQLGLEFFETSAKENINVKAVFERLVD-IICDKMSE 188
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD
Sbjct: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRQD---KRVKLQIWD 76
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 63
>gi|21311975|ref|NP_080953.1| ras-related protein Rab-13 [Mus musculus]
gi|46577121|sp|Q9DD03.1|RAB13_MOUSE RecName: Full=Ras-related protein Rab-13; Flags: Precursor
gi|12832187|dbj|BAB22000.1| unnamed protein product [Mus musculus]
gi|20070865|gb|AAH27214.1| RAB13, member RAS oncogene family [Mus musculus]
gi|148683212|gb|EDL15159.1| RAB13, member RAS oncogene family [Mus musculus]
Length = 202
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 102/171 (59%), Gaps = 11/171 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F ++ F Y +T+G+DF + + + G+ +KLQ+WD A
Sbjct: 9 FKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIE---GKRIKLQVWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNG-AMLPCLLLA 359
GQ+R+ ++ YY+ + G I+++D+T+ KSFE++ W K I +N A + LLL
Sbjct: 66 GQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNW-----MKSIKENASAGVERLLLG 120
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+KCD+ RQV+ + E + ++ + + E S+K + ++++ + L I+
Sbjct: 121 NKCDMEAKRQVQREQAEKLAREHR-IRFFETSAKSSVNVDEAFSSLARDIL 170
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F ++ F Y +T+G+DF + + + G+ +KLQ+WD
Sbjct: 9 FKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIE---GKRIKLQVWD 63
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS VGKT + F ++ F Y +T+G+DF +
Sbjct: 8 LFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIR 48
>gi|440298637|gb|ELP91268.1| GTP-binding protein YPTM1, putative [Entamoeba invadens IP1]
Length = 207
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 97/170 (57%), Gaps = 7/170 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S VGKT+ +Q F +N F Y +TVGVDF K++ K G + VK+Q+WD A
Sbjct: 10 FKILIIGESGVGKTAIMQRFCENTFEPVYISTVGVDFKPKVI---KVGNKTVKMQLWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQDR+ ++ YY+ + G +I++D+T+R SF+ V W ++ + D + +L+ +
Sbjct: 67 GQDRFRNITASYYRGTQGVLIVYDITDRASFDKVSSWFTEVRDRTENDPPVI---ILVGN 123
Query: 361 KCDLPDR-QVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
K DL D V+ +E + Q + S+K+ I+D N L II
Sbjct: 124 KTDLMDHAAVKQEAVEQLARQLGGVQTFTCSAKDGSGIDDVFNALTQSII 173
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S VGKT+ +Q F +N F Y +TVGVDF K++ K G + VK+Q+WD
Sbjct: 10 FKILIIGESGVGKTAIMQRFCENTFEPVYISTVGVDFKPKVI---KVGNKTVKMQLWD 64
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KIL+IG+S VGKT+ +Q F +N F Y +TVGVDF K++
Sbjct: 9 LFKILIIGESGVGKTAIMQRFCENTFEPVYISTVGVDFKPKVI 51
>gi|321455624|gb|EFX66752.1| hypothetical protein DAPPUDRAFT_64407 [Daphnia pulex]
Length = 189
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 94/176 (53%), Gaps = 9/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ GD GKTS + +V F D Y+ TVG + K ++ + L+ +DI
Sbjct: 11 YKLLVIGDQNTGKTSIIHRYVHGSFRDKYEVTVGAGINFKEIAWNNTD--HLTLEFFDIG 68
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G++R M+ +Y+ + G ++ D+T F++ WK DLD K + + +LPC+LL +
Sbjct: 69 GEERSRFMTSAFYRKAVGAFVVTDVTQPNGFQAATLWKKDLDMKLRMHDDTLLPCVLLIN 128
Query: 361 KCD--LPDRQVEINE-----IEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCD D++ NE ++ C F W + S+K + I++++ FLV ++I
Sbjct: 129 KCDGATADQKHSSNELDPSQVDRFCRHQKFSGWFDTSAKNDINIDEAVQFLVGKVI 184
Score = 38.1 bits (87), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
K+LVIGD GKTS + +V F D Y+ TVG + K ++
Sbjct: 12 KLLVIGDQNTGKTSIIHRYVHGSFRDKYEVTVGAGINFKEIA 53
>gi|118151120|ref|NP_001071481.1| ras-related protein Rab-7b [Bos taurus]
gi|122132235|sp|Q08DE8.1|RAB7B_BOVIN RecName: Full=Ras-related protein Rab-7b
gi|115305016|gb|AAI23790.1| RAB7B, member RAS oncogene family [Bos taurus]
gi|296479391|tpg|DAA21506.1| TPA: ras-related protein Rab-7b [Bos taurus]
Length = 200
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 107/196 (54%), Gaps = 10/196 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I G VGKTS + +V F ++Y+ T+G +K++ + +KLQIWD GQ
Sbjct: 11 LIIIGALGVGKTSLLHRYVHKTFYEDYQTTLGASILSKIIILED---TTLKLQIWDTGGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ M +Y+ SDGC++ FD+T+ +SFE++ W+ D+ +K I P ++L +K
Sbjct: 68 ERFRSMVSTFYKGSDGCVLAFDVTDLESFEALETWRGDVLAKTIPMEQPY-PMVVLGNKI 126
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL DRQV + C + + + + EVS+K + + + L R + R E+
Sbjct: 127 DLEDRQVPQEVAQGWCKEKD-IPYFEVSAKNDINVVQAFEMLASRALSRYRSILESY-LT 184
Query: 423 SSIRLSEETLRDDQPK 438
SI+LS E DQPK
Sbjct: 185 DSIKLSPE----DQPK 196
>gi|391330041|ref|XP_003739473.1| PREDICTED: ras-related protein Rab-3-like [Metaseiulus
occidentalis]
Length = 218
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 101/177 (57%), Gaps = 12/177 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 18 FKILIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWDT 73
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++ YY+ + G I+M+D+TN SF+ V W + + DN + +L+
Sbjct: 74 AGQERYRTITTAYYRGAMGFILMYDVTNEDSFKCVQDWVTQIKTYS-WDNAQV---VLVG 129
Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
+KCD+ D R V + + Q + + E S+KE++ ++ LVD IIC K E
Sbjct: 130 NKCDMEDERVVSTDRGRQLAEQLG-LEFFETSAKENINVKQCFERLVD-IICDKMSE 184
Score = 44.7 bits (104), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 7/60 (11%)
Query: 102 PSDAET------VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKK 154
P DA T + KIL+IG+S+VGKTS++ + + F + +TVG+DF K + H K
Sbjct: 5 PKDASTDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK 64
>gi|221116505|ref|XP_002158899.1| PREDICTED: ras-related protein Rab-35-like [Hydra magnipapillata]
Length = 203
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 108/186 (58%), Gaps = 11/186 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F + F +Y T+GVDF + ++ G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSILLRFADDMFSGSYITTIGVDFKIRTIN---IDGEKVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+TN +SF +V +W H++D C + N +L+ +
Sbjct: 66 GQERFRTITSTYYRGTHGVIVVYDVTNAESFVNVKRWLHEIDQNCDVVNK-----VLVGN 120
Query: 361 KCD-LPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D L ++ V+ + + Q + E S+K++L IE + + ++ SKR ++ V
Sbjct: 121 KNDCLKNKVVDTQDAKTFAAQMG-VEVFETSAKDNLNIEQVFSHITAMVLRSKREQQSKV 179
Query: 420 -ERKSS 424
E+K S
Sbjct: 180 LEQKHS 185
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F + F +Y T+GVDF + ++ G VKLQIWD
Sbjct: 9 FKLLIIGDSGVGKSSILLRFADDMFSGSYITTIGVDFKIRTIN---IDGEKVKLQIWD 63
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
D + + K+L+IGDS VGK+S + F + F +Y T+GVDF + ++
Sbjct: 2 ARDYDHLFKLLIIGDSGVGKSSILLRFADDMFSGSYITTIGVDFKIRTIN 51
>gi|427787197|gb|JAA59050.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 204
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 99/188 (52%), Gaps = 3/188 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I G+S VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGESGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T SF+++ W+ + + + P +++ +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTVPGSFKALESWRDEFLIQASPRDPENFPFVVIGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL +R V + C N + + E S+KE L +E + + + + E E
Sbjct: 128 DLDNRGVSTKRAQGWCQSKNGIPYFETSAKEALNVEQAFQTVAKNALAQETDVELYNEFP 187
Query: 423 SSIRLSEE 430
I+L+ E
Sbjct: 188 DQIKLTNE 195
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I G+S VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGESGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++G+S VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGESGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|344278706|ref|XP_003411134.1| PREDICTED: ras-related protein Rab-3B-like [Loxodonta africana]
Length = 219
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 108/197 (54%), Gaps = 9/197 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD A
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRNE---KRVKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQV---ILVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
KCD+ + +V E + + + E S+KE++ + + LVD IC K M +
Sbjct: 136 KCDMEEERVVPTEKGKILAEQLGFDFFEASAKENISVRQAFERLVD-AICDK-MSDSLDT 193
Query: 421 RKSSIRLSEETLRDDQP 437
S + S+ T D P
Sbjct: 194 DPSVLGASKNTRLSDTP 210
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRNE---KRVKLQIWD 77
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTV 64
>gi|15219943|ref|NP_173688.1| Ras-related protein Rab7 [Arabidopsis thaliana]
gi|3914521|sp|O04157.1|RAG3B_ARATH RecName: Full=Ras-related protein RABG3b; Short=AtRABG3b; AltName:
Full=Ras-related protein Rab75; Short=AtRab75
gi|2065015|emb|CAA70951.1| GTP-binding protein Rab7 [Arabidopsis thaliana]
gi|2505866|emb|CAA72904.1| GTP-binding protein Rab7 [Arabidopsis thaliana]
gi|3287684|gb|AAC25512.1| Strong similaity to gb|Y09821 GTP-binding protein Rab7 from A.
thaliana. EST gb|T76449 comes from this gene
[Arabidopsis thaliana]
gi|15718416|dbj|BAB68375.1| AtRab75 [Arabidopsis thaliana]
gi|88193796|gb|ABD42987.1| At1g22740 [Arabidopsis thaliana]
gi|332192158|gb|AEE30279.1| Ras-related protein Rab7 [Arabidopsis thaliana]
Length = 203
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 91/162 (56%), Gaps = 6/162 (3%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V NKF YK T+G DF TK L + R V LQIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNNKFSQQYKATIGADFVTKEL---QIDDRLVTLQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+ + KSFES+ W ++ ++ + P +LL +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVNHLKSFESLDNWHNEFLTRASPRDPMAFPFILLGNKV 127
Query: 363 DLP---DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
D+ R V + C + + + E S+KE ++DS
Sbjct: 128 DIDGGNSRVVSEKKAREWCAEKGNIVYFETSAKEDYNVDDSF 169
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V NKF YK T+G DF TK L + R V LQIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNNKFSQQYKATIGADFVTKEL---QIDDRLVTLQIWD 63
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
T+LK++++GDS VGKTS + +V NKF YK T+G DF TK L
Sbjct: 7 TLLKVIILGDSGVGKTSLMNQYVNNKFSQQYKATIGADFVTKEL 50
>gi|407034580|gb|EKE37287.1| Rab family GTPase [Entamoeba nuttalli P19]
Length = 197
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 95/176 (53%), Gaps = 5/176 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GDS VGK+S + F+ F YK T+G DF TK + G V LQ+WD AG
Sbjct: 1 MILIGDSAVGKSSLMNQFINKSFTAQYKATIGADFLTKEID---VDGESVALQVWDTAGH 57
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
++++ + +Y+ SD C ++FD+TN +SF+S+ WK+D S N P +++ +K
Sbjct: 58 EKFMSFGQAFYRGSDCCFLVFDVTNEQSFQSLDTWKNDFLSGANPTNATNFPFVVMGNKV 117
Query: 363 --DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
D R V + + C + + E S+K L +E++ + +++ + + E+
Sbjct: 118 DEDAAKRVVSNEQAKDWCENNGDIPYYETSAKSGLNVEEAFLTVARKVVKTMKKED 173
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 172 LILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ILI GDS VGK+S + F+ F YK T+G DF TK + G V LQ+WD
Sbjct: 1 MILI-GDSAVGKSSLMNQFINKSFTAQYKATIGADFLTKEID---VDGESVALQVWD 53
Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 111 ILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+++IGDS VGK+S + F+ F YK T+G DF TK
Sbjct: 1 MILIGDSAVGKSSLMNQFINKSFTAQYKATIGADFLTK 38
>gi|112292985|dbj|BAF02870.1| Rab13 [Mus musculus]
Length = 202
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 102/171 (59%), Gaps = 11/171 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F ++ F Y +T+G+DF + + + G+ +KLQ+WD A
Sbjct: 9 FKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIE---GKRIKLQVWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNG-AMLPCLLLA 359
GQ+R+ ++ YY+ + G I+++D+T+ KSFE++ W K I +N A + LLL
Sbjct: 66 GQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNW-----MKSIKENASAGVERLLLG 120
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+KCD+ RQV+ + E + ++ + + E S+K + ++++ + L I+
Sbjct: 121 NKCDMEAKRQVQREQAEKLAREHR-IRFFETSAKSSVNVDEAFSSLARDIL 170
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F ++ F Y +T+G+DF + + + G+ +KLQ+WD
Sbjct: 9 FKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIE---GKRIKLQVWD 63
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS VGKT + F ++ F Y +T+G+DF +
Sbjct: 8 LFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIR 48
>gi|312380644|gb|EFR26581.1| hypothetical protein AND_07236 [Anopheles darlingi]
Length = 199
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 100/164 (60%), Gaps = 11/164 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD GKT VQ F F++++ NT+GVDFS K ++ + VKLQIWD A
Sbjct: 24 FKIVLIGDCGTGKTCIVQRFKSGNFIESHGNTIGVDFSMKAVT---VDDKKVKLQIWDTA 80
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G II++D+T R SF S+ +W ++ + + ++ +
Sbjct: 81 GQERFRTITQSYYRSANGVIIVYDITKRSSFISLQRWIDEVRRY----TASNVMIFVIGN 136
Query: 361 KCDLPD-RQVEINEIEAVCHQY--NFMSWIEVSSKEHLMIEDSM 401
K DL R+VE +E +A+C QY M +E S+K++ +ED+
Sbjct: 137 KSDLDSIREVEFSEAQAMC-QYIPEVMFVMETSAKDNRFVEDAF 179
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD GKT VQ F F++++ NT+GVDFS K ++ + VKLQIWD
Sbjct: 24 FKIVLIGDCGTGKTCIVQRFKSGNFIESHGNTIGVDFSMKAVT---VDDKKVKLQIWD 78
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ KI++IGD GKT VQ F F++++ NT+GVDFS K ++
Sbjct: 23 LFKIVLIGDCGTGKTCIVQRFKSGNFIESHGNTIGVDFSMKAVT 66
>gi|307188292|gb|EFN73084.1| Ras-related protein Rab-7a [Camponotus floridanus]
Length = 207
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 99/188 (52%), Gaps = 3/188 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVED---RIVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD++ SF+S+ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVSAPTSFKSLDSWRDEFLIQASPRDPDNFPFVVLGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL R V + C N + + E S+KE + +E + + + + E E
Sbjct: 128 DLESRAVSSKRAQQWCQSKNNIPYFETSAKEAINVEQAFQTIAKNALAQESEVELYNEFP 187
Query: 423 SSIRLSEE 430
I+LS +
Sbjct: 188 DQIKLSND 195
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVED---RIVTMQIWD 63
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|344238128|gb|EGV94231.1| Ras-related protein Rab-19 [Cricetulus griseus]
Length = 218
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 117/219 (53%), Gaps = 25/219 (11%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GDS VGKT VQ F + ++ +NT+GVDF+ + L + G+ VK+Q+WD A
Sbjct: 18 FKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSL---EIDGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA- 359
GQ+R+ +++ YY+++ II +DLT R +FESV W H+++ A L +L+
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKY----GAANLVIMLIGR 130
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
+K +L +R+V + + +Y ++ +E S+KE I++ + +I
Sbjct: 131 NKSNLWENRRVLFEDACTLAEKYGLLAVLETSAKESRNIDEVFVLMAKELIA-------- 182
Query: 419 VERKSSIRLSEETL-----RDDQPKKLVPADKVSTYCWC 452
++S+ L E++ +D P + + +T C C
Sbjct: 183 ---RNSLHLYGESIQQGLSQDSSPILVAQGPRENTRCTC 218
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDS VGKT VQ F + ++ +NT+GVDF+ + L + G+ VK+Q+WD
Sbjct: 18 FKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSL---EIDGKKVKMQVWD 72
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ + + K+++IGDS VGKT VQ F + ++ +NT+GVDF+ + L
Sbjct: 13 NVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSL 59
>gi|89258445|gb|ABD65446.1| Rab41/43 [Suberites domuncula]
Length = 201
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 98/166 (59%), Gaps = 12/166 (7%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD+ VGKT VQ F +++ Y NT+GVDF +L + G+ +KLQ+WD A
Sbjct: 14 FKLVLIGDAGVGKTCAVQRFKHGVYIERYGNTIGVDF---MLRTVEVDGKRIKLQVWDTA 70
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+ + G I+ +D+TN ++F V W D+ K NGA + LL+ +
Sbjct: 71 GQERFRTITQSYYRGAHGVIVAYDITNAETFNHVTHWIDDV--KRYAGNGAQM--LLMGT 126
Query: 361 KCDL----PD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K D+ P RQV NE +++ + + IE S+K++ IE +
Sbjct: 127 KLDIVMSTPSLRQVPYNEAQSLSTYKHMLEPIETSAKDNTNIEKTF 172
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 172 LILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
L+LI GD+ VGKT VQ F +++ Y NT+GVDF +L + G+ +KLQ+WD
Sbjct: 16 LVLI-GDAGVGKTCAVQRFKHGVYIERYGNTIGVDF---MLRTVEVDGKRIKLQVWD 68
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
+ K+++IGD+ VGKT VQ F +++ Y NT+GVDF
Sbjct: 13 LFKLVLIGDAGVGKTCAVQRFKHGVYIERYGNTIGVDF 50
>gi|449473409|ref|XP_002186832.2| PREDICTED: uncharacterized protein LOC100219191 [Taeniopygia
guttata]
Length = 423
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 101/163 (61%), Gaps = 9/163 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 229 FKLVLIGDASVGKTCLVQRFKTGAFSERQGSTIGVDFTMKSL---EIQGKRVKLQIWDTA 285
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D++ R SF S+ +W D+ G+ + LL+ +
Sbjct: 286 GQERFRTITQSYYRSANGAILAYDISKRGSFLSIPRWIEDVRKYA----GSNIVQLLIGN 341
Query: 361 KCDLPD-RQVEINEIEAVCHQY-NFMSWIEVSSKEHLMIEDSM 401
K DL D R+V++ E +++ Y N + IE S+K+ +E++
Sbjct: 342 KSDLSDLREVQLEEAQSLAEHYDNIICAIETSAKDSSNVEEAF 384
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 229 FKLVLIGDASVGKTCLVQRFKTGAFSERQGSTIGVDFTMKSL---EIQGKRVKLQIWD 283
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+++IGD++VGKT VQ F F + +T+GVDF+ K L
Sbjct: 228 LFKLVLIGDASVGKTCLVQRFKTGAFSERQGSTIGVDFTMKSL 270
>gi|442759119|gb|JAA71718.1| Putative gtp-binding protein [Ixodes ricinus]
Length = 207
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 104/185 (56%), Gaps = 20/185 (10%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKTS + F NKF ++ +T+G+DF +++ + G+ +KLQIWD A
Sbjct: 9 FKLLLIGDSGVGKTSILFRFSDNKFDGSFISTIGIDFKIRII---EIDGKKIKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+T +FE++ W + D D + ++L +
Sbjct: 66 GQERFRTITTAYYRGAMGIMLVYDVTKENTFENIKTWIRNTDEHAAAD----VEKMILGN 121
Query: 361 KCDLPD-RQV--EINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
KCD+ D RQV E E AV H FM E S+ + +ED+ L I +E
Sbjct: 122 KCDMNDLRQVSRERGEKLAVEHGIKFM---ETSAVSSINVEDAFYTLARDI-------KE 171
Query: 418 AVERK 422
+ERK
Sbjct: 172 KMERK 176
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKTS + F NKF ++ +T+G+DF +++ + G+ +KLQIWD
Sbjct: 9 FKLLLIGDSGVGKTSILFRFSDNKFDGSFISTIGIDFKIRII---EIDGKKIKLQIWD 63
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS VGKTS + F NKF ++ +T+G+DF +++
Sbjct: 8 LFKLLLIGDSGVGKTSILFRFSDNKFDGSFISTIGIDFKIRII 50
>gi|51010929|ref|NP_001003419.1| ras-related protein Rab-3C [Danio rerio]
gi|50370044|gb|AAH75980.1| RAB3A, member RAS oncogene family [Danio rerio]
Length = 220
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 103/177 (58%), Gaps = 11/177 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 23 FKVLIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN SF +V W + + DN + LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEDSFNAVQDWSTQIKTYS-WDNAQV---LLVGN 135
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
KCD+ D +V + + Q F + E S+K+++ ++ + LVD +IC +RM E
Sbjct: 136 KCDMEDERVVAGQRGRQLSEQLGF-EFFEASAKDNINVKQTFERLVD-VIC-ERMSE 189
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 22 MFKVLIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 64
>gi|428672346|gb|EKX73260.1| Ras-related protein Rab7 small GTP-binging protein [Babesia equi]
Length = 215
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 96/180 (53%), Gaps = 4/180 (2%)
Query: 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
P I+I GDS VGKTS + F+ KF + Y+ T+G DF T+ ++ + V LQIWD
Sbjct: 6 PILKIIILGDSGVGKTSLMNQFINKKFTNQYRATIGADFLTQEMT---VDDKEVTLQIWD 62
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
AGQ+R+ + + +Y+ +D C++++D TN+K+FESV WK + + + P L+
Sbjct: 63 TAGQERFQSLGKAFYRGADCCMLVYDTTNQKTFESVESWKSEFLIQVEPKDPDSFPFALI 122
Query: 359 ASKC-DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
+K D +R+V N+ C N + E S+K + + + R I ++E
Sbjct: 123 GNKIDDTANRKVSSNKALTWCKANNNIPHFETSAKTAHNVVSAFVEIAKRAIMRDTQDDE 182
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
P I+I GDS VGKTS + F+ KF + Y+ T+G DF T+ ++ + V LQIWD
Sbjct: 6 PILKIIILGDSGVGKTSLMNQFINKKFTNQYRATIGADFLTQEMT---VDDKEVTLQIWD 62
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+LKI+++GDS VGKTS + F+ KF + Y+ T+G DF T+ ++
Sbjct: 7 ILKIIILGDSGVGKTSLMNQFINKKFTNQYRATIGADFLTQEMT 50
>gi|31199429|ref|XP_308662.1| AGAP007096-PA [Anopheles gambiae str. PEST]
gi|21291806|gb|EAA03951.1| AGAP007096-PA [Anopheles gambiae str. PEST]
Length = 220
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 112/194 (57%), Gaps = 16/194 (8%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD GKT VQ F F++++ NT+GVDFS K +S G+ VKLQIWD A
Sbjct: 22 FKIVLIGDCGTGKTCIVQRFKSGNFIESHGNTIGVDFSMKAVS---VDGKKVKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G +I++D+T R +F S+ +W ++ + + ++ +
Sbjct: 79 GQERFRTITQSYYRSANGVLIVYDITKRSTFLSLQRWIDEVRRY----TASNVMIFVIGN 134
Query: 361 KCDL-PDRQVEINEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE- 416
K DL +R+VE +E E +C QY M +E S+K++ ++D+ L + KR +
Sbjct: 135 KSDLDEEREVEFSEAENLC-QYIPEVMFVMETSAKDNRCVDDAFMTLATEL---KRRHDG 190
Query: 417 -EAVERKSSIRLSE 429
A E + I L +
Sbjct: 191 LNAAEEEEGITLGQ 204
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD GKT VQ F F++++ NT+GVDFS K +S G+ VKLQIWD
Sbjct: 22 FKIVLIGDCGTGKTCIVQRFKSGNFIESHGNTIGVDFSMKAVS---VDGKKVKLQIWD 76
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ KI++IGD GKT VQ F F++++ NT+GVDFS K +S
Sbjct: 21 LFKIVLIGDCGTGKTCIVQRFKSGNFIESHGNTIGVDFSMKAVS 64
>gi|399163149|gb|AFP33150.1| rab-7, partial [Caenorhabditis elegans]
Length = 208
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 101/190 (53%), Gaps = 19/190 (10%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V +F + YK T+G DF T+ ++ R V LQIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNRRFSNQYKATIGADFLTRDVN---IDDRTVTLQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++ FD+TN SF+S+ W+ + + + P +LL +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLAFDVTNAASFKSLDSWRDEFLIQASPRDPDHFPFVLLGNKV 127
Query: 363 DL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
DL R V ++ C + + EVS+KE L +E + FL A+ R
Sbjct: 128 DLESQRAVSSKRAQSWCQTKGNIPYYEVSAKEALNVEAA--FL-------------AIAR 172
Query: 422 KSSIRLSEET 431
+ R S+ET
Sbjct: 173 DALARESQET 182
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V +F + YK T+G DF T+ ++ R V LQIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNRRFSNQYKATIGADFLTRDVN---IDDRTVTLQIWD 63
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ +LK++++GDS VGKTS + +V +F + YK T+G DF T+
Sbjct: 6 KALLKVIILGDSGVGKTSLMNQYVNRRFSNQYKATIGADFLTR 48
>gi|183233923|ref|XP_652334.2| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|169801344|gb|EAL46948.2| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
Length = 197
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 95/176 (53%), Gaps = 5/176 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GDS VGK+S + F+ F YK T+G DF TK + G V LQ+WD AG
Sbjct: 1 MILIGDSAVGKSSLMNQFINKSFTAQYKATIGADFLTKEID---VDGESVALQVWDTAGH 57
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
++++ + +Y+ SD C ++FD+TN +SF+S+ WK+D S N P +++ +K
Sbjct: 58 EKFMSFGQAFYRGSDCCFLVFDVTNEQSFQSLDTWKNDFLSGANPTNATNFPFVVMGNKV 117
Query: 363 --DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
D R V + + C + + E S+K L +E++ + +++ + + E+
Sbjct: 118 DEDAAKRVVTNEQAKDWCENNGDIPYYETSAKSGLNVEEAFLTVARKVVKTMKKED 173
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 172 LILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ILI GDS VGK+S + F+ F YK T+G DF TK + G V LQ+WD
Sbjct: 1 MILI-GDSAVGKSSLMNQFINKSFTAQYKATIGADFLTKEID---VDGESVALQVWD 53
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 111 ILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+++IGDS VGK+S + F+ F YK T+G DF TK
Sbjct: 1 MILIGDSAVGKSSLMNQFINKSFTAQYKATIGADFLTK 38
>gi|311259329|ref|XP_003128025.1| PREDICTED: ras-related protein Rab-3B-like [Sus scrofa]
Length = 219
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 100/172 (58%), Gaps = 8/172 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + ++ + VKLQIWD A
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRQE---KRVKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQV---ILVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCD+ + +V E + + + E S+KE++ + + LVD IC K
Sbjct: 136 KCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVD-AICDK 186
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + ++ + VKLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRQE---KRVKLQIWD 77
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 154
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K + ++
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRQE 68
>gi|402469023|gb|EJW04091.1| small GTP-binding protein domain protein [Edhazardia aedis USNM
41457]
Length = 205
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 114/204 (55%), Gaps = 14/204 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ G+S VGKTS + ++ N + NY +T+GVDF K L K +KLQIWD A
Sbjct: 9 FKIILIGNSGVGKTSLLNRYIDNTYHGNYISTIGVDFKIKTL---KVSSDLIKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G II+FD+T+ SF V +W ++ ++ + L+ +
Sbjct: 66 GQERFRTITSAYYRGAHGIIIVFDMTDLDSFTKVTEWLDEIKARA----NEKVEIYLIGN 121
Query: 361 KCDLPDRQ-VEINEIEAVCHQYNFM--SWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
K DL D V+ +IEA ++N +++EVS+K+ +++ L D++ ++ E
Sbjct: 122 KIDLKDEICVQKEDIEAFKKEHNIADSNFMEVSAKDGYQVDELFFKLADKLAKREKAEGP 181
Query: 418 AVER-KSSIRLSEETLRDDQPKKL 440
V + K + +L+ +DD KK
Sbjct: 182 IVSKDKEAFKLN---CKDDDNKKF 202
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 168 TPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 227
T + I++ G+S VGKTS + ++ N + NY +T+GVDF K L K +KLQIW
Sbjct: 6 THLFKIILIGNSGVGKTSLLNRYIDNTYHGNYISTIGVDFKIKTL---KVSSDLIKLQIW 62
Query: 228 D 228
D
Sbjct: 63 D 63
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IG+S VGKTS + ++ N + NY +T+GVDF K L
Sbjct: 8 LFKIILIGNSGVGKTSLLNRYIDNTYHGNYISTIGVDFKIKTL 50
>gi|348554601|ref|XP_003463114.1| PREDICTED: ras-related protein Rab-3B-like [Cavia porcellus]
Length = 219
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 111/198 (56%), Gaps = 11/198 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ +LI G+S+VGKTS++ + + F+ + +TVG+DF K + H+K VKLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDTFIPAFVSTVGIDFKVKTVYRHEK----RVKLQIWDT 78
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+
Sbjct: 79 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQV---ILVG 134
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
+KCD+ + +V E + + + E S+KE++ + + LVD IC K M +
Sbjct: 135 NKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFECLVD-AICEK-MSDSLD 192
Query: 420 ERKSSIRLSEETLRDDQP 437
+ S + S+ T D P
Sbjct: 193 KDPSILGTSKNTRLSDTP 210
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 5/59 (8%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F+ + +TVG+DF K + H+K VKLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDTFIPAFVSTVGIDFKVKTVYRHEK----RVKLQIWD 77
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKK 154
+ K+L+IG+S+VGKTS++ + + F+ + +TVG+DF K + H+K
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDTFIPAFVSTVGIDFKVKTVYRHEK 69
>gi|332028544|gb|EGI68581.1| Ras-related protein Rab-8A [Acromyrmex echinatior]
Length = 208
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 95/164 (57%), Gaps = 9/164 (5%)
Query: 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
TY +L+ GDS VGKT V + ++ D Y +T+G+DF K+++ G P+KLQIWD
Sbjct: 7 ATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIIN---LDGTPIKLQIWD 63
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
AGQ+R+ ++ YY+ + G ++M+D+T+ +SF + W ++ D + +L
Sbjct: 64 TAGQERFRTLTTAYYRGAMGILLMYDVTSLESFNHLSYWLRNIQENASPD----VVKVLA 119
Query: 359 ASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
A+KCD R V+ + + ++ M + EVS KE++ IE++
Sbjct: 120 ANKCDATAHRAVDAERGQKIAENFD-MPFFEVSCKENINIEEAF 162
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 168 TPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 227
+Y +L+ GDS VGKT V + ++ D Y +T+G+DF K+++ G P+KLQIW
Sbjct: 6 AATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIIN---LDGTPIKLQIW 62
Query: 228 D 228
D
Sbjct: 63 D 63
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
D K+LV+GDS VGKT V + ++ D Y +T+G+DF K+++
Sbjct: 4 DFAATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIIN 51
>gi|225709362|gb|ACO10527.1| Ras-related protein Rab-10 [Caligus rogercresseyi]
Length = 198
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 102/170 (60%), Gaps = 9/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F ++ F + +T+G+DF K + G+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSEDTFNTTFISTIGIDFKIKTFELR---GKKIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+N+ G ++++D+TN KSF+++ +W ++ + M +L +
Sbjct: 67 GQERFHTITTSYYRNAMGIMLVYDVTNPKSFDNIAKWLQNIQEHAAEEVDKM----ILGN 122
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCD+ D++V E EA+ +Y + ++E S+K ++ IE + L + I+
Sbjct: 123 KCDMEDKRVISKEKGEAISREYG-IRFLETSAKTNVNIERAFMDLAESIL 171
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F ++ F + +T+G+DF K + G+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSEDTFNTTFISTIGIDFKIKTFELR---GKKIKLQIWD 64
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS VGKT + F ++ F + +T+G+DF K
Sbjct: 9 LFKLLLIGDSGVGKTCILFRFSEDTFNTTFISTIGIDFKIK 49
>gi|123501259|ref|XP_001328031.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|62736256|gb|AAX97457.1| small Rab GTPase RabA1 [Trichomonas vaginalis]
gi|121910969|gb|EAY15808.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 195
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 100/154 (64%), Gaps = 9/154 (5%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
T+ +I G S VGKT+ ++ V+NKF+ + ++T+GV+F + + + + VKLQIWD
Sbjct: 6 TFKFIIIGSSGVGKTALLRRLVENKFVHDQQSTIGVEFDSTSI---EVDDQVVKLQIWDT 62
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ +++ Y++N+ G +++FD+T R++F+ V W +D+ S C D A + +L+
Sbjct: 63 AGQERFRSIAKAYFRNAVGVVLVFDVTERRTFDDVNMWLNDVHSLC--DPSARV--ILVG 118
Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
+K DL D R + ++E EA + +++IE S++
Sbjct: 119 NKTDLADSRVIPVSEAEAYANHRK-LAYIETSAR 151
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 168 TPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 227
+ ++ +I G S VGKT+ ++ V+NKF+ + ++T+GV+F + + + + VKLQIW
Sbjct: 4 SSTFKFIIIGSSGVGKTALLRRLVENKFVHDQQSTIGVEFDSTSI---EVDDQVVKLQIW 60
Query: 228 D 228
D
Sbjct: 61 D 61
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 32/44 (72%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147
++ + K ++IG S VGKT+ ++ V+NKF+ + ++T+GV+F +
Sbjct: 2 ESSSTFKFIIIGSSGVGKTALLRRLVENKFVHDQQSTIGVEFDS 45
>gi|410963617|ref|XP_003988360.1| PREDICTED: EF-hand calcium-binding domain-containing protein 4B
[Felis catus]
Length = 671
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 78/123 (63%), Gaps = 7/123 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ G+S VGKTS+++ F +++F TVG+D+ K++ G V LQ+WD A
Sbjct: 486 FKIVLVGNSAVGKTSFLRRFCEDRFAPGLAATVGIDYQVKMVH---VDGSYVALQLWDTA 542
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY C+++ +++ +DG I+M+DLT R+SF SV QW ++ G +P LLL +
Sbjct: 543 GQERYCCITQQFFRKADGVIVMYDLTARQSFLSVRQWLSSVEEAV----GDRIPVLLLGN 598
Query: 361 KCD 363
K D
Sbjct: 599 KID 601
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 90 SPRASVIG------FEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGV 143
SPR IG E PS + + KI+++G+S VGKTS+++ F +++F TVG+
Sbjct: 461 SPRGQPIGKEDLSKEEASPSTPDRLFKIVLVGNSAVGKTSFLRRFCEDRFAPGLAATVGI 520
Query: 144 DFSTKLL 150
D+ K++
Sbjct: 521 DYQVKMV 527
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 10/74 (13%)
Query: 168 TPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQ 225
TP L I++ G+S VGKTS+++ F +++F TVG+D+ K++ G V LQ
Sbjct: 481 TPDRLFKIVLVGNSAVGKTSFLRRFCEDRFAPGLAATVGIDYQVKMVH---VDGSYVALQ 537
Query: 226 IWDI-----YCTLS 234
+WD YC ++
Sbjct: 538 LWDTAGQERYCCIT 551
>gi|383848303|ref|XP_003699791.1| PREDICTED: ras-related protein Rab-10-like isoform 1 [Megachile
rotundata]
Length = 200
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 104/170 (61%), Gaps = 9/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFSTTFISTIGIDFKIKTVELR---GKKIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN K+FE++V+W ++D D + ++L +
Sbjct: 67 GQERFHTITTSYYRGAMGIMLVYDITNEKTFENIVKWLRNIDEHANED----VEKMILGN 122
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
K D+ DR+V E EA+ ++ + ++E S+K ++ I+ + + L + I+
Sbjct: 123 KSDMEDRRVVSTERGEAIAREHG-IRFMETSAKANINIDRAFSELAEAIL 171
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFSTTFISTIGIDFKIKTVELR---GKKIKLQIWD 64
>gi|355745981|gb|EHH50606.1| hypothetical protein EGM_01463 [Macaca fascicularis]
Length = 189
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 99/183 (54%), Gaps = 5/183 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I G VGKTS + +V F + Y+ T+G +K++ G +KLQIWD GQ
Sbjct: 11 LIIVGAIGVGKTSLLHQYVHKTFYEEYQTTLGASILSKIII---LGDTTLKLQIWDTGGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ M +Y+ SDGCI+ FD+T+ +SFE++ W+ D+ +K I+ P +LL +K
Sbjct: 68 ERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAK-IVPMEQSYPMVLLGNKI 126
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL DR+V + C + + + + EVS+K + + + L R + + E +
Sbjct: 127 DLADRKVPQEVAQGWCREKD-IPYFEVSAKNDINVVQAFEMLASRALSRPSLSRERESSE 185
Query: 423 SSI 425
SI
Sbjct: 186 VSI 188
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I G VGKTS + +V F + Y+ T+G +K++ G +KLQIWD
Sbjct: 11 LIIVGAIGVGKTSLLHQYVHKTFYEEYQTTLGASILSKIII---LGDTTLKLQIWD 63
>gi|17536699|ref|NP_496549.1| Protein RAB-7 [Caenorhabditis elegans]
gi|268533066|ref|XP_002631661.1| C. briggsae CBR-RAB-7 protein [Caenorhabditis briggsae]
gi|3880453|emb|CAA91357.1| Protein RAB-7 [Caenorhabditis elegans]
gi|341885407|gb|EGT41342.1| hypothetical protein CAEBREN_32671 [Caenorhabditis brenneri]
Length = 209
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 101/190 (53%), Gaps = 19/190 (10%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V +F + YK T+G DF T+ ++ R V LQIWD AGQ
Sbjct: 12 VIILGDSGVGKTSLMNQYVNRRFSNQYKATIGADFLTRDVN---IDDRTVTLQIWDTAGQ 68
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++ FD+TN SF+S+ W+ + + + P +LL +K
Sbjct: 69 ERFQSLGVAFYRGADCCVLAFDVTNAASFKSLDSWRDEFLIQASPRDPDHFPFVLLGNKV 128
Query: 363 DL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
DL R V ++ C + + EVS+KE L +E + FL A+ R
Sbjct: 129 DLESQRAVSSKRAQSWCQTKGNIPYYEVSAKEALNVEAA--FL-------------AIAR 173
Query: 422 KSSIRLSEET 431
+ R S+ET
Sbjct: 174 DALARESQET 183
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V +F + YK T+G DF T+ ++ R V LQIWD
Sbjct: 12 VIILGDSGVGKTSLMNQYVNRRFSNQYKATIGADFLTRDVN---IDDRTVTLQIWD 64
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ +LK++++GDS VGKTS + +V +F + YK T+G DF T+
Sbjct: 7 KALLKVIILGDSGVGKTSLMNQYVNRRFSNQYKATIGADFLTR 49
>gi|391336619|ref|XP_003742676.1| PREDICTED: ras-related protein Rab-7a-like [Metaseiulus
occidentalis]
Length = 207
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GDS VGKT + FV KF + YK T+G DF TK + + + LQIWD AGQ
Sbjct: 11 VIVLGDSGVGKTCLMNQFVSKKFTNQYKATIGADFQTKEV---MVDNKLITLQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T+ +F+S+ W+ + + + P +++ +K
Sbjct: 68 ERFQSLGVGFYRGADCCVLVYDVTSPTTFKSLESWRDEFLIQSSPKDPENFPFVVIGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +R + ++ C N + + EVS+KE L ++++
Sbjct: 128 DLENRSITTKRAQSWCQSKNNIPYFEVSAKEALHVDEAF 166
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ +LK++V+GDS VGKT + FV KF + YK T+G DF TK
Sbjct: 6 KVLLKVIVLGDSGVGKTCLMNQFVSKKFTNQYKATIGADFQTK 48
>gi|91093088|ref|XP_969292.1| PREDICTED: similar to ras-related protein Rab-3C, putative
[Tribolium castaneum]
Length = 219
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 100/173 (57%), Gaps = 10/173 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 21 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWDT 76
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++ YY+ + G I+M+D+TN +SF SV W + + DN + +L+
Sbjct: 77 AGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWVTQIKTYS-WDNAQV---ILVG 132
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
+KCD+ D +V E + + + E S+KE++ ++ LVD IIC K
Sbjct: 133 NKCDMEDERVISFERGKQLAEQLGVEFFETSAKENINVKAVFERLVD-IICDK 184
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 21 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWD 75
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKK 154
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K + H K
Sbjct: 20 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK 67
>gi|403258075|ref|XP_003921608.1| PREDICTED: ras-related protein Rab-3B isoform 1 [Saimiri
boliviensis boliviensis]
gi|403258077|ref|XP_003921609.1| PREDICTED: ras-related protein Rab-3B isoform 2 [Saimiri
boliviensis boliviensis]
Length = 219
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 100/172 (58%), Gaps = 8/172 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + ++ + VKLQIWD A
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRQE---KRVKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQV---ILVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCD+ + +V E + + + E S+KE++ + + LVD IC K
Sbjct: 136 KCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVD-AICDK 186
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + ++ + VKLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRQE---KRVKLQIWD 77
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 154
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K + ++
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRQE 68
>gi|345494263|ref|XP_001605584.2| PREDICTED: ras-related protein Rab-8A-like [Nasonia vitripennis]
Length = 208
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 95/164 (57%), Gaps = 9/164 (5%)
Query: 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
TY +L+ GDS VGKT V + ++ D Y +T+G+DF K+++ G P+KLQIWD
Sbjct: 7 ATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIIN---LDGTPIKLQIWD 63
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
AGQ+R+ ++ YY+ + G ++M+D+T+ +SF + W ++ D + +L
Sbjct: 64 TAGQERFRTLTTAYYRGAMGILLMYDVTSLESFNHLSYWLRNIQENASPD----VVKVLA 119
Query: 359 ASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
A+KCD R V+ + + ++ M + EVS KE++ IE++
Sbjct: 120 ANKCDASTQRAVDAERGQKIAENFD-MPFFEVSCKENINIEEAF 162
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 168 TPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 227
+Y +L+ GDS VGKT V + ++ D Y +T+G+DF K+++ G P+KLQIW
Sbjct: 6 AATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIIN---LDGTPIKLQIW 62
Query: 228 D 228
D
Sbjct: 63 D 63
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
D K+LV+GDS VGKT V + ++ D Y +T+G+DF K+++
Sbjct: 4 DFAATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKIIN 51
>gi|157124773|ref|XP_001660517.1| ras-related protein Rab-8A, putative [Aedes aegypti]
gi|108873888|gb|EAT38113.1| AAEL009974-PA [Aedes aegypti]
Length = 219
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 100/171 (58%), Gaps = 10/171 (5%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
TY +L+ GDS VGKT V + ++ D Y +T+G+DF KL++ G P+KLQIWD
Sbjct: 8 TYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKLIN---LDGVPIKLQIWDT 64
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ ++ YY+ + G ++M+D+T+ +SF ++ W ++ D + +L
Sbjct: 65 AGQERFRTLTTAYYRGAMGILLMYDVTSLESFNNLSYWLRNIQENASPD----VVKVLAG 120
Query: 360 SKCDL--PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+KC+ P R V+ + + + ++ M + EVS K+++ IE++ L +I
Sbjct: 121 NKCECNPPQRAVDKDRGDKIAENFD-MPFFEVSCKQNINIEEAFLTLARKI 170
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 168 TPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 227
+Y +L+ GDS VGKT V + ++ D Y +T+G+DF KL++ G P+KLQIW
Sbjct: 6 AATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKLIN---LDGVPIKLQIW 62
Query: 228 D 228
D
Sbjct: 63 D 63
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
D K+LV+GDS VGKT V + ++ D Y +T+G+DF KL++
Sbjct: 4 DFAATYKVLVLGDSNVGKTCIVHRYCDERYYDTYISTIGIDFKQKLIN 51
>gi|403222812|dbj|BAM40943.1| Ras-related GTPase [Theileria orientalis strain Shintoku]
Length = 215
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 98/176 (55%), Gaps = 4/176 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I+I GDS VGKTS + F+ +F + Y+ T+G DF T ++ + V LQIWD AGQ
Sbjct: 10 IIILGDSGVGKTSLMNQFINKRFTNQYRATIGADFLTMEMT---VDDKEVTLQIWDTAGQ 66
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + + +Y+ +D C++++D TN+K+FES+ WK + + + P L+ +K
Sbjct: 67 ERFQSLGKAFYRGADCCMLVYDTTNQKTFESIESWKSEFLIQVDPKDPDSFPFALVGNKI 126
Query: 363 -DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
D+ +++V N+ + C N + E S+K + ++ N + R I ++E
Sbjct: 127 DDVENKKVSTNKALSWCKANNDIPHFETSAKTSHNVTNAFNEIAKRAIIRDNQDDE 182
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
I+I GDS VGKTS + F+ +F + Y+ T+G DF T ++ + V LQIWD
Sbjct: 10 IIILGDSGVGKTSLMNQFINKRFTNQYRATIGADFLTMEMT---VDDKEVTLQIWD 62
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147
+++LKI+++GDS VGKTS + F+ +F + Y+ T+G DF T
Sbjct: 5 KSILKIIILGDSGVGKTSLMNQFINKRFTNQYRATIGADFLT 46
>gi|350417672|ref|XP_003491537.1| PREDICTED: ras-related protein Rab-35-like [Bombus impatiens]
Length = 201
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 108/193 (55%), Gaps = 10/193 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +Y T+GVDF + + G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFNGSYITTIGVDFKIQTVD---IDGERVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+ SF +V +W H+++ C + N +L+ +
Sbjct: 66 GQERFRTITSTYYRGTHGVIVVYDVTSGDSFANVKRWLHEIEQNCDVVNR-----VLVGN 120
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK--RMEEEA 418
K D P+ +V + E + E S+K+++ +++ + +++ +K R E +A
Sbjct: 121 KNDAPNEKVVLTEDAQRFANQMGIQLFETSAKDNINVQEMFMAITRQVLRTKKERKERQA 180
Query: 419 VERKSSIRLSEET 431
++ ++ L + T
Sbjct: 181 IQTSETVNLRKST 193
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F +Y T+GVDF + + G VKLQIWD
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFNGSYITTIGVDFKIQTVD---IDGERVKLQIWD 63
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
+ K+L+IGDS VGK+S + F N F +Y T+GVDF
Sbjct: 8 LFKLLIIGDSGVGKSSLLLRFADNTFNGSYITTIGVDF 45
>gi|351697769|gb|EHB00688.1| Ras-related protein Rab-3B [Heterocephalus glaber]
Length = 219
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 98/169 (57%), Gaps = 7/169 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + ++ + VKLQIWD A
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRQE---KRVKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQV---ILVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCD+ + +V E + + + E S+KE++ + + LVD I
Sbjct: 136 KCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAIF 184
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + ++ + VKLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRQE---KRVKLQIWD 77
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 93 ASVIGFEPRPSDA-----ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147
ASV G + DA + + K+L+IG+S+VGKTS++ + + F + +TVG+DF
Sbjct: 2 ASVTGSKTGVKDASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKV 61
Query: 148 KLLSHKK 154
K + ++
Sbjct: 62 KTVYRQE 68
>gi|348517184|ref|XP_003446115.1| PREDICTED: ras-related protein Rab-3C-like [Oreochromis niloticus]
Length = 218
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 102/176 (57%), Gaps = 10/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 21 FKLLIIGNSSVGKTSFLFRYADDAFTSAFVSTVGIDFKVKTVYKND---KRIKLQIWDTA 77
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L +
Sbjct: 78 GQERYRTITTAYYRGAMGFILMYDITNEESFGAVQDWSTQIKTYS-WDNAQV---VLAGN 133
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ +R V ++ + Q F + E S+K+++ ++ + LVD +IC K E
Sbjct: 134 KCDMEEERVVSVDNGRLLAEQLGF-EFFETSAKDNINVKQTFERLVD-LICDKMSE 187
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 21 FKLLIIGNSSVGKTSFLFRYADDAFTSAFVSTVGIDFKVKTVYKND---KRIKLQIWD 75
Score = 41.6 bits (96), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 20 MFKLLIIGNSSVGKTSFLFRYADDAFTSAFVSTVGIDFKVKTV 62
>gi|342186413|emb|CCC95899.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 199
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 100/169 (59%), Gaps = 9/169 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GDS GK+S + FV++ F+++ T+GV+F +K++ + GR +KLQIWD +GQ
Sbjct: 11 LIVLGDSGSGKSSLLHRFVEDTFVEDRTQTIGVEFGSKVV---ELSGRKIKLQIWDTSGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+RY ++R YY+ + GC+I++D+T R S+ES+ QW +D+ G + +L+ +K
Sbjct: 68 ERYKSVTRSYYRGAVGCLIVYDITQRSSYESIPQWLNDVHHLA----GQDVVVMLVGNKS 123
Query: 363 DLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
D+ +R V+ NE + N + +E S+ + D+ + +C
Sbjct: 124 DVANNRAVQHNEASLFALENNLLH-LETSASTGEFVSDAFLKVAKAALC 171
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 39/56 (69%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ GDS GK+S + FV++ F+++ T+GV+F +K++ + GR +KLQIWD
Sbjct: 11 LIVLGDSGSGKSSLLHRFVEDTFVEDRTQTIGVEFGSKVV---ELSGRKIKLQIWD 63
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 34/45 (75%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ ++K++V+GDS GK+S + FV++ F+++ T+GV+F +K++
Sbjct: 6 QKLMKLIVLGDSGSGKSSLLHRFVEDTFVEDRTQTIGVEFGSKVV 50
>gi|321465918|gb|EFX76917.1| hypothetical protein DAPPUDRAFT_106641 [Daphnia pulex]
Length = 211
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 115/198 (58%), Gaps = 11/198 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F ++ F + +T+G+DF + + + G+ +KLQIWD A
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI---ELDGKKIKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSF+++ W +++ D + ++L +
Sbjct: 66 GQERFRTITTAYYRGAMGIMLVYDITNDKSFDNIKNWIRNIEEHASAD----VEKMILGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D RQV + E + +Y + ++E S+K + +ED+ F + R I +K ME++
Sbjct: 122 KCDMNDKRQVSKDRGEQLAIEYG-IKFMETSAKASINVEDAF-FTLARDIKAK-MEKKLE 178
Query: 420 ERKSSIRLSEETLRDDQP 437
S + ++ D+P
Sbjct: 179 ASHPSGKGGGHQIKADEP 196
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 167 QTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
+T YL +L+ GDS VGKT + F ++ F + +T+G+DF + + + G+ +KL
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI---ELDGKKIKL 59
Query: 225 QIWD 228
QIWD
Sbjct: 60 QIWD 63
>gi|72392985|ref|XP_847293.1| small GTP-binding protein Rab7 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|1877404|emb|CAA68210.1| rab7 [Trypanosoma brucei]
gi|62176473|gb|AAX70580.1| small GTP-binding protein Rab7, putative [Trypanosoma brucei]
gi|70803323|gb|AAZ13227.1| small GTP-binding protein Rab7, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261330517|emb|CBH13501.1| small GTP-binding protein Rab7, putative [Trypanosoma brucei
gambiense DAL972]
Length = 219
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 95/185 (51%), Gaps = 18/185 (9%)
Query: 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
P Y I++ GD VGK++ F + + D+ T+GVDF + + R + LQIWD
Sbjct: 5 PAYKIIVIGDVGVGKSNISSRFCDSIYYDDIVPTIGVDFKYCHTTTLEKHARTILLQIWD 64
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
+GQDR++ ++ YY+N G +I FDLTNR SFE + W L S C + + P +L+
Sbjct: 65 TSGQDRFVSLTTAYYRNCHGALICFDLTNRSSFEGIDAWFERLRSHCPV----LPPLILV 120
Query: 359 ASKCDLPD--------------RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFL 404
K DL + RQVE +E +A ++ + + E SS+ + + ++ L
Sbjct: 121 GCKLDLVECSELHKEGTSLGICRQVEKSEADAWAKRHGCLCYFETSSRNNTNVSEAFQHL 180
Query: 405 VDRII 409
I+
Sbjct: 181 GTYIV 185
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
+ P+Y I++ GD VGK++ F + + D+ T+GVDF + + R + LQI
Sbjct: 3 EEPAYKIIVIGDVGVGKSNISSRFCDSIYYDDIVPTIGVDFKYCHTTTLEKHARTILLQI 62
Query: 227 WD 228
WD
Sbjct: 63 WD 64
>gi|67467937|ref|XP_650041.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56466592|gb|EAL44655.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56790084|dbj|BAD82838.1| small GTPase EhRabX2 [Entamoeba histolytica]
gi|449706292|gb|EMD46168.1| small GTPase EhRabX2, putative [Entamoeba histolytica KU27]
Length = 204
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 107/183 (58%), Gaps = 10/183 (5%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
T I++ GDS VGKTS + FV K+ YK+T+GVD STK++S K + V LQIWD
Sbjct: 6 TLKIIVLGDSFVGKTSLINQFVNRKYSSEYKSTIGVDLSTKVISIK---DQLVSLQIWDP 62
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
+G +R+ C+S +++ +DGC+++ +T+ +SF S W D+ I G +P + +A
Sbjct: 63 SGTERFRCISESFFRGTDGCVLVCSVTSIESFNSFESWMSDI----INHIGYNVPFVAVA 118
Query: 360 SKCDLP--DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
+K DL + QV N ++ C + N S+ VS+K+ +E++ L + ++ + ++
Sbjct: 119 NKSDLDPIEWQVTSNRLDTWCKKKNIPSFF-VSAKDASNVENAFIRLSEDVLINNSTKQS 177
Query: 418 AVE 420
VE
Sbjct: 178 TVE 180
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
I++ GDS VGKTS + FV K+ YK+T+GVD STK++S K + V LQIWD
Sbjct: 9 IIVLGDSFVGKTSLINQFVNRKYSSEYKSTIGVDLSTKVISIK---DQLVSLQIWD 61
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 34/45 (75%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 153
LKI+V+GDS VGKTS + FV K+ YK+T+GVD STK++S K
Sbjct: 7 LKIIVLGDSFVGKTSLINQFVNRKYSSEYKSTIGVDLSTKVISIK 51
>gi|145546430|ref|XP_001458898.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74834089|emb|CAI44446.1| rab_A30 [Paramecium tetraurelia]
gi|124426720|emb|CAK91501.1| unnamed protein product [Paramecium tetraurelia]
Length = 206
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I+I GDS VGKTS + +V +F Y+ TVG DF K + R V LQIWD A
Sbjct: 9 FKIIILGDSGVGKTSLMNQYVNARFTQQYRATVGADFMAKEVM---IDDRMVTLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ + +Y+ +D C++++D+TN KSF+S+ W+ + + + P ++L +
Sbjct: 66 GQERFQSLGGAFYRGADCCVLVYDITNPKSFDSLDSWRDEFLMQGQPKDPEHFPFVVLGN 125
Query: 361 KCD-LPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
K D +R+V+ ++ + C + + + EVS+K+ IE + + ++ EE
Sbjct: 126 KLDKASERKVQESKAQQWCKSHGNIQFFEVSAKDATNIEQAFQDIAKAAASQEKDEE 182
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I+I GDS VGKTS + +V +F Y+ TVG DF K + R V LQIWD
Sbjct: 9 FKIIILGDSGVGKTSLMNQYVNARFTQQYRATVGADFMAKEVM---IDDRMVTLQIWD 63
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + + KI+++GDS VGKTS + +V +F Y+ TVG DF K
Sbjct: 3 SKKKQLFKIIILGDSGVGKTSLMNQYVNARFTQQYRATVGADFMAK 48
>gi|440795599|gb|ELR16719.1| Ras subfamily protein [Acanthamoeba castellanii str. Neff]
Length = 514
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 103/178 (57%), Gaps = 9/178 (5%)
Query: 234 SPIQIPTYPIL----ITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG 289
SP Q Y L + GD+ VGKTS F +++F Y +T+GV+F K + + G
Sbjct: 283 SPPQSADYDQLFKFNVIGDAGVGKTSLHTRFFRDEFSLPYVSTIGVEFGIKTI---ELCG 339
Query: 290 RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDN 349
+ +KLQ+WD AGQ+R+ ++R YY+ S G ++++D+TNR S+E+ W +++ + + D+
Sbjct: 340 QRIKLQVWDTAGQERFRSITRAYYRGSRGLVVVYDVTNRSSWENAKFWINEVQ-RNLPDD 398
Query: 350 GAMLPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVD 406
M+P LL+ +K DL RQV E +A+ + W E SS+ +E++ L +
Sbjct: 399 VDMMPFLLVGTKNDLEHQRQVSPEEGQALALELGAAGWAETSSRTGSEVENTFLRLTE 456
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Query: 164 SPIQTPSYLIL----ITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG 219
SP Q+ Y L + GD+ VGKTS F +++F Y +T+GV+F K + + G
Sbjct: 283 SPPQSADYDQLFKFNVIGDAGVGKTSLHTRFFRDEFSLPYVSTIGVEFGIKTI---ELCG 339
Query: 220 RPVKLQIWD 228
+ +KLQ+WD
Sbjct: 340 QRIKLQVWD 348
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 91 PRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P AS P+ +D + + K VIGD+ VGKTS F +++F Y +T+GV+F K +
Sbjct: 276 PTASARPSPPQSADYDQLFKFNVIGDAGVGKTSLHTRFFRDEFSLPYVSTIGVEFGIKTI 335
>gi|301786120|ref|XP_002928475.1| PREDICTED: ras-related protein Rab-7b-like [Ailuropoda melanoleuca]
gi|281339452|gb|EFB15036.1| hypothetical protein PANDA_018434 [Ailuropoda melanoleuca]
Length = 200
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 106/196 (54%), Gaps = 10/196 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I G VGKTS + +V F ++Y+ T+G +K++ +KLQIWD GQ
Sbjct: 11 LIIIGALGVGKTSLLHQYVHKTFYEDYQTTLGASILSKIII---LDDTTLKLQIWDTGGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ M +Y+ SDGCI+ FD+T+ +SFE++ W+ D+ +K I + P ++L +K
Sbjct: 68 ERFRSMVSTFYKGSDGCILAFDVTDLESFEALDTWRGDVLAKTIPMEPSY-PMVVLGNKI 126
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL DRQV + C + + + + EVS+K + + + L R + R E
Sbjct: 127 DLADRQVPQEVAQGWCREKD-IPYFEVSAKNDINVVQAFEMLASRALSRYRSVLENY-LA 184
Query: 423 SSIRLSEETLRDDQPK 438
SI+LS E DQP+
Sbjct: 185 DSIKLSPE----DQPR 196
>gi|109133514|ref|XP_001082679.1| PREDICTED: ras-related protein Rab-7b isoform 2 [Macaca mulatta]
gi|355558838|gb|EHH15618.1| hypothetical protein EGK_01733 [Macaca mulatta]
Length = 189
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 99/183 (54%), Gaps = 5/183 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I G VGKTS + +V F + Y+ T+G +K++ G +KLQIWD GQ
Sbjct: 11 LIIVGAIGVGKTSLLHQYVHKTFYEEYQTTLGASILSKIII---LGDTTLKLQIWDTGGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ M +Y+ SDGCI+ FD+T+ +SFE++ W+ D+ +K I+ P +LL +K
Sbjct: 68 ERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAK-IVPMEQSYPMVLLGNKI 126
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL DR+V + C + + + + EVS+K + + + L R + + E +
Sbjct: 127 DLADRKVPQEVAQGWCREKD-IPYFEVSAKNDINVVQAFEMLASRALSRPSLSRERESSE 185
Query: 423 SSI 425
SI
Sbjct: 186 VSI 188
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I G VGKTS + +V F + Y+ T+G +K++ G +KLQIWD
Sbjct: 11 LIIVGAIGVGKTSLLHQYVHKTFYEEYQTTLGASILSKIII---LGDTTLKLQIWD 63
>gi|340728042|ref|XP_003402341.1| PREDICTED: ras-related protein Rab-35-like [Bombus terrestris]
Length = 249
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 108/193 (55%), Gaps = 10/193 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +Y T+GVDF + + G VKLQIWD A
Sbjct: 57 FKLLIIGDSGVGKSSLLLRFADNTFNGSYITTIGVDFKIQTVD---IDGERVKLQIWDTA 113
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+ SF +V +W H+++ C + N +L+ +
Sbjct: 114 GQERFRTITSTYYRGTHGVIVVYDVTSGDSFANVKRWLHEIEQNCDVVNR-----VLVGN 168
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK--RMEEEA 418
K D P+ +V + E + E S+K+++ +++ + +++ +K R E +A
Sbjct: 169 KNDAPNEKVVLTEDAQRFANQMGIQLFETSAKDNINVQEMFMAITRQVLRTKKERKERQA 228
Query: 419 VERKSSIRLSEET 431
++ ++ L + T
Sbjct: 229 IQTSETVNLRKST 241
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F +Y T+GVDF + + G VKLQIWD
Sbjct: 57 FKLLIIGDSGVGKSSLLLRFADNTFNGSYITTIGVDFKIQTVD---IDGERVKLQIWD 111
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
+ K+L+IGDS VGK+S + F N F +Y T+GVDF
Sbjct: 56 LFKLLIIGDSGVGKSSLLLRFADNTFNGSYITTIGVDF 93
>gi|402594067|gb|EJW87994.1| rab family protein 10 [Wuchereria bancrofti]
Length = 203
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 114/207 (55%), Gaps = 15/207 (7%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F + F + +T+G+DF K + K G+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKTCILYRFSDDAFNTTFISTIGIDFKIKTIELK---GKKIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSF+++ +W ++D D + +LL +
Sbjct: 67 GQERFHTITTSYYRGAMGIMLVYDITNAKSFDNIAKWLRNIDEHASED----VEKMLLGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
KCD+ +R+V E + + ++E S+K ++ I+ + L + I+ ++ E
Sbjct: 123 KCDMAERRVVSRERGEKIANDHGIRFLETSAKANIQIDKAFYDLAEAILDKMPIKNEG-- 180
Query: 421 RKSSIRLSEETLRDDQPKKLVPADKVS 447
+ + T+R +P+ V ++S
Sbjct: 181 ------MKQPTIRPAEPQSNVAIGRLS 201
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F + F + +T+G+DF K + K G+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKTCILYRFSDDAFNTTFISTIGIDFKIKTIELK---GKKIKLQIWD 64
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 153
+ + K+L+IGDS VGKT + F + F + +T+G+DF K + K
Sbjct: 7 DLLFKLLLIGDSGVGKTCILYRFSDDAFNTTFISTIGIDFKIKTIELK 54
>gi|332016796|gb|EGI57617.1| Ras-related protein Rab-3 [Acromyrmex echinatior]
Length = 260
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 101/176 (57%), Gaps = 10/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 58 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWDT 113
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++ YY+ + G I+M+D+TN +SF SV W + + DN + +L+
Sbjct: 114 AGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWVTQIKNYS-WDNAQV---ILVG 169
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
+KCD+ + +V E + + + E S+KE++ ++ LVD IIC K E
Sbjct: 170 NKCDMEEERVISTERGKQLAEQLGVRFFETSAKENINVKAVFEQLVD-IICDKMSE 224
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 58 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWD 112
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 86 SNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
S +P A G + + + + K+L+IG+S+VGKTS++ + + F + +TVG+DF
Sbjct: 35 SQRNNPMARQDGRDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDF 94
Query: 146 STK-LLSHKK 154
K + H K
Sbjct: 95 KVKTVFRHDK 104
>gi|224069898|ref|XP_002303077.1| predicted protein [Populus trichocarpa]
gi|222844803|gb|EEE82350.1| predicted protein [Populus trichocarpa]
Length = 218
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 114/208 (54%), Gaps = 24/208 (11%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGK++ + F +N+F N K T+GV+F T+++ G+ +K QIWD A
Sbjct: 16 FKIVVIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVD---IDGKEIKAQIWDTA 72
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G +I++D+T R SF+SV +W +L + C + +L+ +
Sbjct: 73 GQERFRAVTSAYYRGAVGALIVYDITRRTSFDSVKRWLDELGTHC----DTAIARMLVGN 128
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL R+V +E +++ + + ++E S+ + +E + E V
Sbjct: 129 KCDLDSIREVSRDEGKSLAEEESLF-FMETSALDSTNVEAAF---------------EVV 172
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVS 447
R+ +S + L D K + A++VS
Sbjct: 173 IREIYNNMSRKILNSDSYKAELTANRVS 200
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGK++ + F +N+F N K T+GV+F T+++ G+ +K QIWD
Sbjct: 16 FKIVVIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVD---IDGKEIKAQIWD 70
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI+VIGDS VGK++ + F +N+F N K T+GV+F T+++
Sbjct: 15 LFKIVVIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVV 57
>gi|167377314|ref|XP_001734353.1| GTP-binding protein yptV5 [Entamoeba dispar SAW760]
gi|165904184|gb|EDR29502.1| GTP-binding protein yptV5, putative [Entamoeba dispar SAW760]
Length = 207
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 101/191 (52%), Gaps = 5/191 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GDS VGK+S + F+ F YK T+G DF TK + G + LQ+WD AG
Sbjct: 11 MILIGDSAVGKSSLMNQFINKSFTAQYKATIGADFLTKEID---VDGESIALQVWDTAGH 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
++++ + +Y+ SD C ++FD+TN +SF+S+ WK+D S N P +++ +K
Sbjct: 68 EKFMSFGQAFYRGSDCCFLVFDVTNEQSFQSLDTWKNDFLSGANPTNPTNFPFVVMGNKV 127
Query: 363 --DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
D R V ++ + C + + E S+K L +E++ + +++ + + E+
Sbjct: 128 DEDAAKRVVSNDQAKEWCENNGDIPYYETSAKSGLNVEEAFLTVARKVVKTMKKEDNHSV 187
Query: 421 RKSSIRLSEET 431
S+I + T
Sbjct: 188 PISTISIDGNT 198
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 165 PIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
P +T +ILI GDS VGK+S + F+ F YK T+G DF TK + G + L
Sbjct: 4 PKKTLLKMILI-GDSAVGKSSLMNQFINKSFTAQYKATIGADFLTKEID---VDGESIAL 59
Query: 225 QIWD 228
Q+WD
Sbjct: 60 QVWD 63
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+T+LK+++IGDS VGK+S + F+ F YK T+G DF TK
Sbjct: 6 KTLLKMILIGDSAVGKSSLMNQFINKSFTAQYKATIGADFLTK 48
>gi|29841442|gb|AAP06474.1| SJCHGC06013 protein [Schistosoma japonicum]
gi|226466782|emb|CAX69526.1| RAB7, member RAS oncogene family [Schistosoma japonicum]
Length = 205
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 98/184 (53%), Gaps = 3/184 (1%)
Query: 247 GDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI 306
GDS VGKTS + ++ KF + YK T+G DF TK + + R V +QIWD AGQ+R+
Sbjct: 15 GDSGVGKTSLITQYIDKKFSNQYKATIGADFFTK---QEVFDDRLVTMQIWDTAGQERFQ 71
Query: 307 CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366
+ +Y+ +D C++++D++ +F+++ W+++ + N P +++ +KCDL +
Sbjct: 72 SLGVAFYRGADCCVLVYDVSMTSTFKTLDSWRNEFLVQSSPRNPEKFPFIVIGNKCDLDN 131
Query: 367 RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERKSSIR 426
R + N C + + E S+KE+ +E + ++ I + + SIR
Sbjct: 132 RAISENRARQWCQANGNLPYFECSAKENTNVELAFEHIIRVAIDEESATNLHSDYPDSIR 191
Query: 427 LSEE 430
L E
Sbjct: 192 LGTE 195
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 177 GDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
GDS VGKTS + ++ KF + YK T+G DF TK + + R V +QIWD
Sbjct: 15 GDSGVGKTSLITQYIDKKFSNQYKATIGADFFTK---QEVFDDRLVTMQIWD 63
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 115 GDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
GDS VGKTS + ++ KF + YK T+G DF TK
Sbjct: 15 GDSGVGKTSLITQYIDKKFSNQYKATIGADFFTK 48
>gi|449268202|gb|EMC79072.1| Ras-related protein Rab-3B [Columba livia]
Length = 219
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 109/194 (56%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + VKLQIWD A
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYR---NDKRVKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+T+ SF +V W + + DN + +L+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITSEDSFNAVQDWATQIKTYS-WDNAQV---ILVGN 135
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D R V + + + + Q F + E S+KE++ + LVD IIC K E++
Sbjct: 136 KCDMEDERIVPVEKGKHLADQLGF-DYFEASAKENINVRQVFERLVD-IICEKM--SESI 191
Query: 420 ERKSSIRLSEETLR 433
E S S ++R
Sbjct: 192 ESDPSRGASGRSMR 205
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTV 64
>gi|74182584|dbj|BAE34652.1| unnamed protein product [Mus musculus]
Length = 212
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 118/213 (55%), Gaps = 10/213 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + + G V++QIWD A
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI---EVDGIKVRIQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY +++ YY+ + G +++D+++ + ++ +++W D+D + +L+ +
Sbjct: 66 GQERYQTITKQYYRRAQGIFLVYDISSERFYQHIMKWVSDVDEYA----PEGVQKILIGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D RQV + + + +Y M + E S+ +L I++S L ++ + R E + +
Sbjct: 122 KADEEQKRQVGREQGQQLAKEYG-MDFYETSACTNLNIKESFTRLTGLVLQAHRKELDGL 180
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
++S L+ L +D+ K PA+ T CWC
Sbjct: 181 RTRASNELALAELEEDEGKPEGPANSSKT-CWC 212
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + + G V++QIWD
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI---EVDGIKVRIQIWD 63
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ + ++L+IGDS VGKT + F N+F ++ +T+GVDF K +
Sbjct: 6 DVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI 50
>gi|123444682|ref|XP_001311109.1| Ras-like GTP-binding protein YPT1 [Trichomonas vaginalis G3]
gi|62736240|gb|AAX97449.1| small Rab GTPase Rab1b [Trichomonas vaginalis]
gi|121892906|gb|EAX98179.1| Ras-like GTP-binding protein YPT1, putative [Trichomonas vaginalis
G3]
Length = 203
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 97/160 (60%), Gaps = 9/160 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS GK+ + F +N F DNY +T+GVDF K ++ G+ +K+Q+WD A
Sbjct: 10 FKVLLIGDSGTGKSCLLIRFAENIFSDNYISTIGVDFKIKTIN---VDGKTIKMQVWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ S+G I+++D+TNR SF+ + W ++D D + L++ +
Sbjct: 67 GQERFRTITASYYRGSNGIILVYDVTNRDSFDHINYWMKEIDRLAAPD----VCRLIVGN 122
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
K DL D R V E +++ QY +S++E S+ + +E+
Sbjct: 123 KSDLSDKRVVTTEEGQSLAQQYG-VSFLETSALGNANVEE 161
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS GK+ + F +N F DNY +T+GVDF K ++ G+ +K+Q+WD
Sbjct: 10 FKVLLIGDSGTGKSCLLIRFAENIFSDNYISTIGVDFKIKTIN---VDGKTIKMQVWD 64
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+D + + K+L+IGDS GK+ + F +N F DNY +T+GVDF K ++
Sbjct: 4 ADFDLLFKVLLIGDSGTGKSCLLIRFAENIFSDNYISTIGVDFKIKTIN 52
>gi|45360691|ref|NP_989019.1| RAB35, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|38174140|gb|AAH61434.1| RAB35, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|89268698|emb|CAJ82712.1| RAB35, member RAS oncogene family [Xenopus (Silurana) tropicalis]
Length = 201
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 105/174 (60%), Gaps = 10/174 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+ +SF +V +W H+++ C D+ + +L+ +
Sbjct: 66 GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DD---VCRILVGN 120
Query: 361 KCDLPDRQ-VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K D P+R+ VE + Q + + E S+KE+L +E+ N + + ++ +K+
Sbjct: 121 KNDDPERKVVETEDAYKFAAQMD-IQLFETSAKENLNVEEMFNCITELVLRAKK 173
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWD 63
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
D + + K+L+IGDS VGK+S + F N F +Y T+GVDF +
Sbjct: 2 ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIR 48
>gi|328790442|ref|XP_003251420.1| PREDICTED: ras-related protein Rab-35-like [Apis mellifera]
gi|380017688|ref|XP_003692779.1| PREDICTED: ras-related protein Rab-35-like [Apis florea]
Length = 201
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 108/193 (55%), Gaps = 10/193 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +Y T+GVDF + + G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFNGSYITTIGVDFKIQTVD---VDGERVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+ SF +V +W H+++ C + N +L+ +
Sbjct: 66 GQERFRTITSTYYRGTHGVIVVYDVTSGDSFANVKRWLHEIEQNCDVVNR-----VLVGN 120
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK--RMEEEA 418
K D P+ +V + E + E S+K+++ +++ + +++ +K R E +A
Sbjct: 121 KNDAPNEKVVLTEDAQRFANQMGIQLFETSAKDNVNVQEMFMAITRQVLRTKKERKERQA 180
Query: 419 VERKSSIRLSEET 431
++ ++ L + T
Sbjct: 181 IQTSETVNLRKST 193
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F +Y T+GVDF + + G VKLQIWD
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFNGSYITTIGVDFKIQTVD---VDGERVKLQIWD 63
Score = 41.6 bits (96), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
+ K+L+IGDS VGK+S + F N F +Y T+GVDF
Sbjct: 8 LFKLLIIGDSGVGKSSLLLRFADNTFNGSYITTIGVDF 45
>gi|159465968|ref|XP_001691181.1| small rab-related GTPase [Chlamydomonas reinhardtii]
gi|2500075|sp|Q39573.1|YPTC5_CHLRE RecName: Full=GTP-binding protein YPTC5
gi|806726|gb|AAA82728.1| YptC5 [Chlamydomonas reinhardtii]
gi|158279153|gb|EDP04914.1| small rab-related GTPase [Chlamydomonas reinhardtii]
Length = 206
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 97/177 (54%), Gaps = 6/177 (3%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +VQ KF YK T+G DF TK + + + V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTKEI---EVDDKKVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+ N KSF+ + W+ + + + P ++L +K
Sbjct: 68 ERFQSLGSAFYRGADCCVLVFDVNNAKSFDDLDNWRDEFIIQAGPPDPDNFPFMVLGNKI 127
Query: 363 DL---PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
D RQV + +A C + + E S+KE + +E + + + +++ EE
Sbjct: 128 DENGGSSRQVSEKKAKAWCASKGSIPYFETSAKEDINVEAAFTCITRNALRNEKEEE 184
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +VQ KF YK T+G DF TK + + + V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTKEI---EVDDKKVTMQIWD 63
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 30/41 (73%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+LK++++GDS VGKTS + +VQ KF YK T+G DF TK
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTK 48
>gi|348527766|ref|XP_003451390.1| PREDICTED: ras-related protein Rab-3B-like [Oreochromis niloticus]
Length = 218
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 115/201 (57%), Gaps = 11/201 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F +++ +TVG+DF K + + +KLQIWD A
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFSNSFVSTVGIDFKVKTVYR---NDKRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +++ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQV---IMVGN 135
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ +R V + + + Q F + E S+KE++ + LVD IIC K E V
Sbjct: 136 KCDMDEERVVPPEKGKHLADQLGF-EYYEASAKENINVRQVFERLVD-IICVKMSERVDV 193
Query: 420 ERKSSIRLSEETLRDDQPKKL 440
E ++ S+ T D+P +L
Sbjct: 194 EAPAAPG-SKTTRLTDKPAQL 213
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F +++ +TVG+DF K + + +KLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFSNSFVSTVGIDFKVKTVYR---NDKRIKLQIWD 77
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 32/43 (74%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F +++ +TVG+DF K +
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDSFSNSFVSTVGIDFKVKTV 64
>gi|312065340|ref|XP_003135743.1| Ras family protein [Loa loa]
gi|307769102|gb|EFO28336.1| Ras family protein [Loa loa]
Length = 209
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 109/179 (60%), Gaps = 12/179 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD VGKT VQ F F++ T+GVDFS K L + G+ VKLQIWD
Sbjct: 11 FKIVLIGDMGVGKTCVVQRFKNGTFIERQGTTIGVDFSMKTLIIE---GKRVKLQIWDTG 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G ++ +DLT R+SFES+ +W D+ SK N + +L+A+
Sbjct: 68 GQERFRTITQSYYRSANGILLCYDLTCRQSFESLHRWLDDV-SKFAAPN---VCKVLIAT 123
Query: 361 KCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
K DL +R VE +E + + +N +IE SSK +L ++++ FL + C + + EA
Sbjct: 124 KADLENERLVERDEGSELANTHNMCMFIETSSKSNLNVDNA--FL--ELACQLKSQYEA 178
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD VGKT VQ F F++ T+GVDFS K L + G+ VKLQIWD
Sbjct: 11 FKIVLIGDMGVGKTCVVQRFKNGTFIERQGTTIGVDFSMKTLIIE---GKRVKLQIWD 65
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGD VGKT VQ F F++ T+GVDFS K L
Sbjct: 10 LFKIVLIGDMGVGKTCVVQRFKNGTFIERQGTTIGVDFSMKTL 52
>gi|389749162|gb|EIM90339.1| ras-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 214
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 93/161 (57%), Gaps = 9/161 (5%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+S + I++ GD +VGKTS + F+ + F + Y+ T+G+DF +K L R V
Sbjct: 12 ISSTSLKRTKIVLLGDQSVGKTSLITRFMYDTFDNTYQATIGIDFLSKTL---YLDDRTV 68
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
+LQ+WD AGQ+R+ + Y ++S I++FD+TNR SF S +W D+ S + G
Sbjct: 69 RLQLWDTAGQERFRSLIPSYIRDSTVAIVVFDITNRASFMSTTKWIDDVRS----ERGND 124
Query: 353 LPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
+ +L+ +K DL D RQV + E A Q N M ++E S+K
Sbjct: 125 VMVVLVGNKADLSDKRQVTLEEATAKSQQLNIM-FMETSAK 164
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 11/118 (9%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
I++ GD +VGKTS + F+ + F + Y+ T+G+DF +K L R V+LQ+WD
Sbjct: 22 IVLLGDQSVGKTSLITRFMYDTFDNTYQATIGIDFLSKTL---YLDDRTVRLQLWDTAGQ 78
Query: 230 --YCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 285
+ +L P I + I + S++ K++D+ ++ G D L+ +K
Sbjct: 79 ERFRSLIPSYIRDSTVAIVVFDITNRASFMS---TTKWIDDVRSERGNDVMVVLVGNK 133
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 30/41 (73%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
KI+++GD +VGKTS + F+ + F + Y+ T+G+DF +K L
Sbjct: 21 KIVLLGDQSVGKTSLITRFMYDTFDNTYQATIGIDFLSKTL 61
>gi|157136703|ref|XP_001656883.1| ras-related protein Rab, putative [Aedes aegypti]
gi|94469070|gb|ABF18384.1| RAB protein [Aedes aegypti]
gi|108869891|gb|EAT34116.1| AAEL013620-PA [Aedes aegypti]
Length = 203
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 108/185 (58%), Gaps = 10/185 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +Y T+GVDF + + G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTVV---INGERVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+TN +SF +V +W ++++ C + N +L+ +
Sbjct: 66 GQERFRTITNTYYRGTHGVIVVYDVTNGESFANVKRWLQEIEANCDVVNK-----VLVGN 120
Query: 361 KCDLPDRQVEINE-IEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D P R+V I E + +Q + + E S+K+++ +E+ + ++++ K+ ++ V
Sbjct: 121 KNDDPARKVVITEDAQRFANQMD-IQLFETSAKDNINVEEMFLAITEQVLRHKKQTQKQV 179
Query: 420 ERKSS 424
+ S
Sbjct: 180 QSDQS 184
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F +Y T+GVDF + + G VKLQIWD
Sbjct: 9 FKLLIIGDSGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTVV---INGERVKLQIWD 63
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS VGK+S + F N F +Y T+GVDF + +
Sbjct: 8 LFKLLIIGDSGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTV 50
>gi|62858521|ref|NP_001016372.1| RAB15, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|89267008|emb|CAJ81786.1| RAB15, member RAS onocogene family [Xenopus (Silurana) tropicalis]
gi|213624493|gb|AAI71178.1| RAB15, member RAS onocogene family [Xenopus (Silurana) tropicalis]
gi|213625715|gb|AAI71180.1| RAB15, member RAS onocogene family [Xenopus (Silurana) tropicalis]
Length = 212
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 118/213 (55%), Gaps = 10/213 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + + G V++QIWD A
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHPSHISTIGVDFKMKTI---EVDGIKVRIQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY +++ YY+ + G +++D+T+ +S++ +++W D+D +G + +L+ +
Sbjct: 66 GQERYQTITKQYYRRAQGIFLVYDITSERSYQHIMKWASDVDEYA--PDG--VQKILIGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D RQV N+ + +Y M + E S+ + I++S L + ++ + + E E +
Sbjct: 122 KADEEQKRQVGKNQGMKLAEEYG-MDFFETSACTNYNIKESFTRLTELVLMAHKRELEGL 180
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
S+ L+ L DD K A+ S CWC
Sbjct: 181 RMSSADELNLAELEDDGSKSDGMANS-SKSCWC 212
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + + G V++QIWD
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHPSHISTIGVDFKMKTI---EVDGIKVRIQIWD 63
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ + ++L+IGDS VGKT + F N+F ++ +T+GVDF K +
Sbjct: 6 DVLFRLLLIGDSGVGKTCLLCRFTDNEFHPSHISTIGVDFKMKTI 50
>gi|549813|sp|P36864.1|YPTV5_VOLCA RecName: Full=GTP-binding protein yptV5
gi|409168|gb|AAA34254.1| GTP-binding protein [Volvox carteri]
Length = 205
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 98/176 (55%), Gaps = 5/176 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I+I GDS VGKTS + +VQ KF YK T+G DF TK + + + V +QIWD AGQ
Sbjct: 11 IIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTKEI---EVDDKKVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+ N KSF+ + W+ + + + P ++L +K
Sbjct: 68 ERFQSLGSAFYRGADCCMLVFDVNNAKSFDDLDNWRDEFIIQAGPSDPDNFPFVVLGNKI 127
Query: 363 DL--PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
D +RQV + +A C + + E S+KE + +E + + + +++ EE
Sbjct: 128 DEVGVNRQVTEKKAKAWCASKGSIPYFETSAKEDINVEAAFTCITRNALRNEKEEE 183
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
I+I GDS VGKTS + +VQ KF YK T+G DF TK + + + V +QIWD
Sbjct: 11 IIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTKEI---EVDDKKVTMQIWD 63
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 30/41 (73%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
VLKI+++GDS VGKTS + +VQ KF YK T+G DF TK
Sbjct: 8 VLKIIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTK 48
>gi|348680772|gb|EGZ20588.1| hypothetical protein PHYSODRAFT_465114 [Phytophthora sojae]
Length = 360
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 100/181 (55%), Gaps = 22/181 (12%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
SP+ +++ GDS VGK++ V F +NK++ + TVG +F+TK + + G R +K
Sbjct: 93 SPMAESILKVVLIGDSGVGKSNLVMRFTKNKYMPHSVQTVGFEFATKTI---RVGDRRLK 149
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQW-----KHDLDSKCILD 348
QIWD AGQ+R+ ++ YY+N+ G +I++D+TNR SFE V W +H +S
Sbjct: 150 AQIWDTAGQERFQSLTAAYYRNAVGAMIVYDITNRSSFEHVTGWLAQVHEHSHES----- 204
Query: 349 NGAMLPCLLLASKCDLP----DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFL 404
L +L+ +KCDL R+V E +++ M ++E S+ + + D+ L
Sbjct: 205 ----LVLILVGNKCDLAHLPESREVSTLEAARFAAKHS-MEFLETSALDSTNVVDAFKKL 259
Query: 405 V 405
+
Sbjct: 260 I 260
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 35/46 (76%)
Query: 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
AE++LK+++IGDS VGK++ V F +NK++ + TVG +F+TK +
Sbjct: 96 AESILKVVLIGDSGVGKSNLVMRFTKNKYMPHSVQTVGFEFATKTI 141
>gi|34559282|gb|AAL08054.2| Rab7a protein [Paramecium octaurelia]
gi|53850820|gb|AAU95464.1| Rab7a protein [Paramecium octaurelia]
gi|210137241|gb|ACJ09042.1| Rab7a1 protein [Paramecium octaurelia]
Length = 206
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I+I GDS VGKTS + +V +F Y+ TVG DF K + R V LQIWD A
Sbjct: 9 FKIIILGDSGVGKTSLMNQYVNARFTQQYRATVGADFMAKEVM---IDDRMVTLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ + +Y+ +D C++++D+TN KSF+S+ W+ + + + P ++L +
Sbjct: 66 GQERFQSLGGAFYRGADCCVLVYDITNPKSFDSLDSWRDEFLMQGQPKDPEHFPFVVLGN 125
Query: 361 KCD-LPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
K D +R+V+ ++ + C + + + EVS+K+ IE + + ++ EE
Sbjct: 126 KLDKATERKVQESKAQQWCKSHGNIQFFEVSAKDATNIEQAFQDIAKAAASQEKDEE 182
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I+I GDS VGKTS + +V +F Y+ TVG DF K + R V LQIWD
Sbjct: 9 FKIIILGDSGVGKTSLMNQYVNARFTQQYRATVGADFMAKEVM---IDDRMVTLQIWD 63
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + + KI+++GDS VGKTS + +V +F Y+ TVG DF K
Sbjct: 3 SQKKQLFKIIILGDSGVGKTSLMNQYVNARFTQQYRATVGADFMAK 48
>gi|303748|dbj|BAA02115.1| GTP-binding protein [Pisum sativum]
gi|738939|prf||2001457G GTP-binding protein
Length = 201
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 107/184 (58%), Gaps = 9/184 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS+VGK+ + F + ++D+Y +T+GVDF + + + G+ VKLQIWD A
Sbjct: 9 FKLLIIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELE---GKTVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G II++D+T+ +SF +V QW H++D N ++ LL+ +
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDVTDMESFNNVKQWLHEIDRYA---NDSVCK-LLVGN 121
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
KCDL + +V + + ++E S+K+ + +E + FL K+M +
Sbjct: 122 KCDLTENKVVQTQTAKAFADELGIPFLETSAKDSINVEQA--FLTMAAEIKKKMGSQPSG 179
Query: 421 RKSS 424
KS+
Sbjct: 180 SKSA 183
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS+VGK+ + F + ++D+Y +T+GVDF + + + G+ VKLQIWD
Sbjct: 9 FKLLIIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELE---GKTVKLQIWD 63
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 30/41 (73%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS+VGK+ + F + ++D+Y +T+GVDF +
Sbjct: 8 LFKLLIIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIR 48
>gi|357017283|gb|AET50670.1| hypothetical protein [Eimeria tenella]
Length = 207
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 106/192 (55%), Gaps = 7/192 (3%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS+VGKTS + +V KF + YK T+G DF TK + + V +QIWD AGQ
Sbjct: 11 VIILGDSSVGKTSLMNQYVNKKFSNQYKATIGADFLTKDVV---IDDKEVTIQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+TN KSF+S+ WK + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTNPKSFDSLESWKDEFLIQSSPADPDAFPFVVLGNKV 127
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
D + R+V + EA C +S+ E S+K+ + + + + R ++E +
Sbjct: 128 DEKEKRRVSAAKAEAFCGSK--ISYFETSAKQAINVSAAFEEIA-RKAMQHETKQEQIYL 184
Query: 422 KSSIRLSEETLR 433
++ LS + +R
Sbjct: 185 PETLTLSNQEIR 196
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
P +++LK++++GDS+VGKTS + +V KF + YK T+G DF TK
Sbjct: 2 PPKKKSLLKVIILGDSSVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS+VGKTS + +V KF + YK T+G DF TK + + V +QIWD
Sbjct: 11 VIILGDSSVGKTSLMNQYVNKKFSNQYKATIGADFLTKDVV---IDDKEVTIQIWD 63
>gi|47216418|emb|CAG01969.1| unnamed protein product [Tetraodon nigroviridis]
Length = 219
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 104/177 (58%), Gaps = 11/177 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 22 FKILIIGNSSVGKTSFLFRYADDSFTPTFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN SF +V W + + DN + LL+ +
Sbjct: 79 GQERYRTITTAYYRGAMGFILMYDITNEDSFNAVQDWSTQIKTYS-WDNAQV---LLVGN 134
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
KCD+ + +V ++ + Q F + E S+K+++ ++ + LVD IIC +RM E
Sbjct: 135 KCDMEEERVVASQRGRQLSDQLGF-EFFEASAKDNINVKQTFERLVD-IIC-ERMSE 188
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 12 EASDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPTFVSTVGIDFKVKTI 63
>gi|47217500|emb|CAG10880.1| unnamed protein product [Tetraodon nigroviridis]
Length = 221
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 102/176 (57%), Gaps = 10/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDAFTSAFVSTVGIDFKVKTVYKND---KRIKLQIWDTA 80
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L +
Sbjct: 81 GQERYRTITTAYYRGAMGFILMYDITNEESFGAVQDWSTQIKTYS-WDNAQV---VLAGN 136
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ +R V ++ + Q F + E S+K+++ ++ + LVD +IC K E
Sbjct: 137 KCDMEEERVVSVDSGRLLAEQLGF-EFFETSAKDNINVKQTFERLVD-LICDKMSE 190
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDAFTSAFVSTVGIDFKVKTVYKND---KRIKLQIWD 78
Score = 41.2 bits (95), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K
Sbjct: 23 MFKLLIIGNSSVGKTSFLFRYADDAFTSAFVSTVGIDFKVK 63
>gi|307207614|gb|EFN85274.1| Ras-related protein Rab-3 [Harpegnathos saltator]
Length = 222
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 102/176 (57%), Gaps = 10/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 21 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWDT 76
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++ YY+ + G I+M+D+TN +SF SV W + + DN + +L+
Sbjct: 77 AGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWVTQIKTYS-WDNAQV---ILVG 132
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
+KCD+ + +V +E + + + E S+KE++ ++ LVD IIC K E
Sbjct: 133 NKCDMEEERVISSERGRQLAEQLGVRFFETSAKENINVKAVFEQLVD-IICDKMSE 187
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 21 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWD 75
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKK 154
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K + H K
Sbjct: 20 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK 67
>gi|74831253|emb|CAI39271.1| rab_C85 [Paramecium tetraurelia]
Length = 219
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 110/193 (56%), Gaps = 17/193 (8%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+S VGK+ + + +N+F +N+ NT+GVDF TK ++ G VKLQIWD A
Sbjct: 11 FKVLLIGNSGVGKSCMLMRYSENQFTNNFYNTIGVDFKTKTVA---IGEHNVKLQIWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQDR+ ++ YY+ + G II++D+T+R+SFE+V W ++D + +L+ +
Sbjct: 68 GQDRFRTITCSYYRGAQGIIIVYDITDRESFENVKTWIAEIDKYA----SESVNRMLVGN 123
Query: 361 KCDLPD-RQVEINEIEAVCH--------QYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
K D+ + R+V E +C+ Q+ + + E S+K + IE + + I+
Sbjct: 124 KADITERREVSYEEGLELCNLDLYYLARQFQ-IPFYETSAKSSINIEAAFTHITKNILNR 182
Query: 412 KRMEEEAVERKSS 424
+ +AV RK+S
Sbjct: 183 EIHNTKAVVRKTS 195
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ G+S VGK+ + + +N+F +N+ NT+GVDF TK ++ G VKLQIWD
Sbjct: 11 FKVLLIGNSGVGKSCMLMRYSENQFTNNFYNTIGVDFKTKTVA---IGEHNVKLQIWD 65
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 35/49 (71%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
SD + K+L+IG+S VGK+ + + +N+F +N+ NT+GVDF TK ++
Sbjct: 5 SDYHFLFKVLLIGNSGVGKSCMLMRYSENQFTNNFYNTIGVDFKTKTVA 53
>gi|322800183|gb|EFZ21268.1| hypothetical protein SINV_07541 [Solenopsis invicta]
Length = 220
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 101/176 (57%), Gaps = 10/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 18 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWDT 73
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++ YY+ + G I+M+D+TN +SF SV W + + DN + +L+
Sbjct: 74 AGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKNYS-WDNAQV---ILVG 129
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
+KCD+ + +V E + + + E S+KE++ ++ LVD IIC K E
Sbjct: 130 NKCDMEEERVISTERGKQLAEQLGVRFFETSAKENINVKAVFETLVD-IICDKMSE 184
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 157 GRPYGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLS 213
R G + Q Y+ +LI G+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 2 ARQDGRDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR 61
Query: 214 HKKYGGRPVKLQIWD 228
H K VKLQIWD
Sbjct: 62 HDK----RVKLQIWD 72
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 97 GFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKK 154
G + + + + K+L+IG+S+VGKTS++ + + F + +TVG+DF K + H K
Sbjct: 6 GRDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK 64
>gi|156551213|ref|XP_001600682.1| PREDICTED: ras-related protein Rab-8A-like isoform 1 [Nasonia
vitripennis]
Length = 209
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 103/173 (59%), Gaps = 10/173 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F ++ F + +T+G+DF + + + G+ +KLQIWD A
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNTTFISTIGIDFKIRTI---ELDGKKIKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSFE++ W +++ D + +LL +
Sbjct: 66 GQERFRTITTAYYRGAMGIMLVYDVTNEKSFENIKNWIRNIEENASAD----VEKMLLGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KC+L RQV EA+ +Y + ++E S+K + +E++ F + R I +K
Sbjct: 122 KCELTSKRQVSKERGEALAIEYG-IKFMETSAKSSINVEEAF-FTLARDIKAK 172
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 167 QTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
+T YL +L+ GDS VGKT + F ++ F + +T+G+DF + + + G+ +KL
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNTTFISTIGIDFKIRTI---ELDGKKIKL 59
Query: 225 QIWD 228
QIWD
Sbjct: 60 QIWD 63
>gi|328865966|gb|EGG14352.1| Rab GTPase [Dictyostelium fasciculatum]
Length = 200
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 110/182 (60%), Gaps = 9/182 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y I++ G+S VGK+ + F N F ++ T+GVDF+ K + +K+ G + VKLQIWD A
Sbjct: 9 YKIILVGESAVGKSCILVRFTDNTFNTHFAPTLGVDFNVKTIRNKETG-QTVKLQIWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ +Y+ S G I+++D+T+ KSFE W D++ NG ++ +L+ +
Sbjct: 68 GQERFRSITQTFYRGSHGVILVYDITDVKSFERCRDWIADINQ--YTQNGMII--VLVGN 123
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D+ R+V + +A+ + N + + E S+KE++ + + + +V I + M++ V
Sbjct: 124 KIDMTAQRKVSFEQGKALAEELN-IKFFETSAKENMGVTNVFDHIVQHI--EQTMKDTEV 180
Query: 420 ER 421
E+
Sbjct: 181 EK 182
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 168 TPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 227
T Y I++ G+S VGK+ + F N F ++ T+GVDF+ K + +K+ G+ VKLQIW
Sbjct: 6 TLCYKIILVGESAVGKSCILVRFTDNTFNTHFAPTLGVDFNVKTIRNKET-GQTVKLQIW 64
Query: 228 D 228
D
Sbjct: 65 D 65
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 31/47 (65%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG 156
KI+++G+S VGK+ + F N F ++ T+GVDF+ K + +K+ G
Sbjct: 10 KIILVGESAVGKSCILVRFTDNTFNTHFAPTLGVDFNVKTIRNKETG 56
>gi|73976938|ref|XP_849630.1| PREDICTED: ras-related protein Rab-3B isoform 1 [Canis lupus
familiaris]
Length = 219
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 109/198 (55%), Gaps = 11/198 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H+K VKLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK----RVKLQIWDT 78
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++ YY+ + G I+M+D+TN SF +V W + + DN + +L+
Sbjct: 79 AGQERYRTITTAYYRGAMGFILMYDITNEDSFNAVQDWATQIKTYS-WDNAQV---ILVG 134
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
+KCD+ + +V E + + + E S+KE++ + + LVD IC K M +
Sbjct: 135 NKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVD-AICDK-MSDSLD 192
Query: 420 ERKSSIRLSEETLRDDQP 437
S++ S+ T D P
Sbjct: 193 TDPSTLGTSKNTRLSDTP 210
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKK 154
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K + H+K
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK 69
>gi|167387053|ref|XP_001738005.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165898967|gb|EDR25691.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 204
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 107/183 (58%), Gaps = 10/183 (5%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
T I++ GDS VGKTS + FV K+ YK+T+GVD STK +S K + V LQIWD
Sbjct: 6 TLKIIVLGDSFVGKTSLINQFVNRKYSSEYKSTIGVDLSTKAMSVK---DQLVSLQIWDP 62
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
+G +R+ C+S +++ +DGC+++ +T+ +SF S W +D+ + G +P + +A
Sbjct: 63 SGTERFRCISDSFFRGTDGCVLVCSVTSIESFNSFESWMNDITNHI----GYNVPFVAVA 118
Query: 360 SKCDLP--DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
+K DL + QV N ++ C + N S+ VS+K+ +E++ L + ++ + ++
Sbjct: 119 NKSDLDPIEWQVTSNRLDTWCKKKNIPSFF-VSAKDASNVENAFVRLCEDVLINNSTKQS 177
Query: 418 AVE 420
VE
Sbjct: 178 TVE 180
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
I++ GDS VGKTS + FV K+ YK+T+GVD STK +S K + V LQIWD
Sbjct: 9 IIVLGDSFVGKTSLINQFVNRKYSSEYKSTIGVDLSTKAMSVK---DQLVSLQIWD 61
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 153
LKI+V+GDS VGKTS + FV K+ YK+T+GVD STK +S K
Sbjct: 7 LKIIVLGDSFVGKTSLINQFVNRKYSSEYKSTIGVDLSTKAMSVK 51
>gi|118386344|ref|XP_001026291.1| Ras family protein [Tetrahymena thermophila]
gi|89308058|gb|EAS06046.1| Ras family protein [Tetrahymena thermophila SB210]
gi|307777822|dbj|BAJ21307.1| Rab-family small GTPase RabX12 [Tetrahymena thermophila]
Length = 233
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 103/174 (59%), Gaps = 11/174 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ G+ VGKT + + +++F T+G+DF +KLL +K G+ ++LQ+WDIAGQ
Sbjct: 9 IIVVGEQNVGKTCILARYSRDQFDTTCPPTLGMDFQSKLLEYK---GKTIRLQLWDIAGQ 65
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+RY +S++Y + + G +I+ D+ +S ++ ++WK ++ C NG +P +L+ +K
Sbjct: 66 ERYNSVSKLYVRGAYGALIVADVKEEESLQNTLKWKKMIEDSCDQKNGKPIPMILVQNKV 125
Query: 363 D-------LPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
D + D Q E + +++ Q F ++VS+K++ I D N L+D II
Sbjct: 126 DELKGVGQIQDFQKE-SYLKSFAQQNGFNGALQVSAKDNTNIPDIFNMLIDEII 178
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 9/82 (10%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
I++ G+ VGKT + + +++F T+G+DF +KLL +K G+ ++LQ+WDI
Sbjct: 9 IIVVGEQNVGKTCILARYSRDQFDTTCPPTLGMDFQSKLLEYK---GKTIRLQLWDIAGQ 65
Query: 230 --YCTLSPIQI-PTYPILITGD 248
Y ++S + + Y LI D
Sbjct: 66 ERYNSVSKLYVRGAYGALIVAD 87
>gi|312285796|gb|ADQ64588.1| hypothetical protein [Bactrocera oleae]
Length = 208
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 101/188 (53%), Gaps = 3/188 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS+VGKTS + ++ +F + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSSVGKTSLMNQYINKRFSNQYKATIGADFCTKEVIADD---RVVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+T+ SF+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTSPNSFKNLDSWRDEFLIQASPRDPDHFPFVVLGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
D+ +RQV + C N M + E S+K+ +E + + + + E E
Sbjct: 128 DMDNRQVSTRRAQQWCQSKNDMPYFETSAKDGTNVELAFQTIARNALAQEAEVELYNEFP 187
Query: 423 SSIRLSEE 430
IRL+ +
Sbjct: 188 DQIRLNTD 195
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS+VGKTS + ++ +F + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSSVGKTSLMNQYINKRFSNQYKATIGADFCTKEVIADD---RVVTMQIWD 63
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 33/43 (76%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+++LK++++GDS+VGKTS + ++ +F + YK T+G DF TK
Sbjct: 6 KSLLKVIILGDSSVGKTSLMNQYINKRFSNQYKATIGADFCTK 48
>gi|409082156|gb|EKM82514.1| hypothetical protein AGABI1DRAFT_111121 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426199982|gb|EKV49906.1| GTP binding protein [Agaricus bisporus var. bisporus H97]
Length = 214
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 9/151 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ GD +VGKTS + F+ + F + Y+ T+G+DF +K + + R V+LQ+WD AGQ
Sbjct: 23 IVLLGDQSVGKTSLITRFMYDTFDNTYQATIGIDFLSKTMYLED---RTVRLQLWDTAGQ 79
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + Y ++S I++FD+TNR+SF S +W D+ S + G + +L+ +K
Sbjct: 80 ERFRSLIPSYIRDSSVAIVVFDITNRQSFMSTTKWIEDVRS----ERGNDVIIVLVGNKA 135
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
DL D RQV + E A Q N M ++E S+K
Sbjct: 136 DLSDKRQVTLEEATAKATQLNIM-FMETSAK 165
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
I++ GD +VGKTS + F+ + F + Y+ T+G+DF +K + + R V+LQ+WD
Sbjct: 23 IVLLGDQSVGKTSLITRFMYDTFDNTYQATIGIDFLSKTMYLED---RTVRLQLWD 75
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 30/41 (73%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
KI+++GD +VGKTS + F+ + F + Y+ T+G+DF +K +
Sbjct: 22 KIVLLGDQSVGKTSLITRFMYDTFDNTYQATIGIDFLSKTM 62
>gi|7496249|pir||T15546 hypothetical protein C18A3.6 - Caenorhabditis elegans
Length = 343
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 107/190 (56%), Gaps = 10/190 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + G + VKLQIWD A
Sbjct: 88 FKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFR---GDKRVKLQIWDTA 144
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF SV W + + +N + +L+ +
Sbjct: 145 GQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYS-WENAQV---VLVGN 200
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ +R V ++ + Q + + E S+KE++ ++ LV+ IIC K E
Sbjct: 201 KCDMDSERVVSMDRGRQLADQLG-LEFFETSAKENINVKAVFEKLVE-IICDKMAERPTA 258
Query: 420 ERKSSIRLSE 429
K + SE
Sbjct: 259 TAKRTEARSE 268
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 156 GGRPYGTF--SPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 211
GG+P G P Q Y+ +LI G+S+VGKTS++ + + F + +TVG+DF K
Sbjct: 69 GGQPQGATPGQPDQNFDYMFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKT 128
Query: 212 LSHKKYGGRPVKLQIWD 228
+ G + VKLQIWD
Sbjct: 129 VFR---GDKRVKLQIWD 142
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K
Sbjct: 87 MFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVK 127
>gi|74025730|ref|XP_829431.1| small GTPase [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|1195465|gb|AAC46990.1| ras-related protein RAB-4 [Trypanosoma brucei rhodesiense]
gi|70834817|gb|EAN80319.1| small GTPase, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|261335424|emb|CBH18418.1| ras-related rab-4, putative [Trypanosoma brucei gambiense DAL972]
Length = 198
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 85/132 (64%), Gaps = 8/132 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GDS GK+S + FV++ F + T+GV+F +K++ + GR +KLQIWD AGQ
Sbjct: 11 LIVVGDSGTGKSSLLHRFVEDTFSEERAQTIGVEFGSKII---ELSGRRIKLQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+RY ++R YY+ + GC+I++D+T R S+ESV QW +D+ G + +L+ +K
Sbjct: 68 ERYKSVTRSYYRGAVGCLIVYDITERTSYESVPQWLNDVRQLA----GPDVVVMLIGNKS 123
Query: 363 DLP-DRQVEINE 373
D+ +R V+ NE
Sbjct: 124 DMSKNRAVQHNE 135
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ GDS GK+S + FV++ F + T+GV+F +K++ + GR +KLQIWD
Sbjct: 11 LIVVGDSGTGKSSLLHRFVEDTFSEERAQTIGVEFGSKII---ELSGRRIKLQIWD 63
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ ++K++V+GDS GK+S + FV++ F + T+GV+F +K++
Sbjct: 6 QQLMKLIVVGDSGTGKSSLLHRFVEDTFSEERAQTIGVEFGSKII 50
>gi|145533477|ref|XP_001452483.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124420182|emb|CAK85086.1| unnamed protein product [Paramecium tetraurelia]
Length = 215
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 112/199 (56%), Gaps = 9/199 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I+I GDS VGKT+ V F Q KFLD+ K TVGV+F H G+ +K Q+WD AGQ
Sbjct: 13 IIIVGDSGVGKTNLVNRFAQQKFLDDSKPTVGVEF---FFRHIDIMGKTIKAQVWDTAGQ 69
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+++ ++ YY+ + G +I +D+T +SF +V +W +L + L +L+ +K
Sbjct: 70 EKFRAITYGYYRGALGAMICYDITKEQSFLNVERWIEELREH----GDSNLVMMLIGTKS 125
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL ++V NE + M+++E S+ + + + + L+++I + + +++
Sbjct: 126 DLESKRVVRNEDGTQKALQHNMAFLETSALKAANVGKAFSMLLEKIYVGIDNQGKEYQKR 185
Query: 423 SSIRLSEE--TLRDDQPKK 439
+SI+L+ E T+++ Q K
Sbjct: 186 ASIKLTSEPITIKNAQNTK 204
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
I+I GDS VGKT+ V F Q KFLD+ K TVGV+F H G+ +K Q+WD
Sbjct: 13 IIIVGDSGVGKTNLVNRFAQQKFLDDSKPTVGVEF---FFRHIDIMGKTIKAQVWD 65
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
D + ++KI+++GDS VGKT+ V F Q KFLD+ K TVGV+F
Sbjct: 4 EEDYDILMKIIIVGDSGVGKTNLVNRFAQQKFLDDSKPTVGVEF 47
>gi|340368936|ref|XP_003383006.1| PREDICTED: ras-related protein Rab-7a-like [Amphimedon
queenslandica]
Length = 206
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 90/159 (56%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFTSQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+TN +F+++ W+ + + + P +++ +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVTNANTFKTLDSWRDEFLIQASPRDPENFPFVVIGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV + C N + + E S+KE + ++ +
Sbjct: 128 DLENRQVPARRAQNWCESKNNIPYYETSAKEAVNVDQAF 166
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFTSQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ +LK++++GDS VGKTS + +V KF YK T+G DF TK
Sbjct: 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFTSQYKATIGADFLTK 48
>gi|255730629|ref|XP_002550239.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240132196|gb|EER31754.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 228
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 94/166 (56%), Gaps = 4/166 (2%)
Query: 232 TLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 291
+L+ + +P + I++ GDS+VGKTS V F NKF + NT+G F TK+ S +
Sbjct: 13 SLNSVPVPPFKIVVLGDSSVGKTSLVHRFTTNKFDLHTSNTIGAAFITKVFSPFQNEEHK 72
Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNG 350
VKL+IWD AGQ+RY ++ +YY+N+ ++ FDL+N +S S + W L+ D
Sbjct: 73 VKLEIWDTAGQERYRSLTPMYYRNAKTALVCFDLSNFESSISAAKYWIQQLELNNSSDAS 132
Query: 351 AMLPCLLLASKCDL-PDRQVEINEI--EAVCHQYNFMSWIEVSSKE 393
+ L+ +K DL P+++ EI E + Q N + E SSKE
Sbjct: 133 DKVEIRLVGTKLDLAPNKRTEIQHQIDELIAQQPNIKQYHETSSKE 178
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 161 GTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR 220
+ + + P + I++ GDS+VGKTS V F NKF + NT+G F TK+ S +
Sbjct: 12 SSLNSVPVPPFKIVVLGDSSVGKTSLVHRFTTNKFDLHTSNTIGAAFITKVFSPFQNEEH 71
Query: 221 PVKLQIWDI-----YCTLSPI 236
VKL+IWD Y +L+P+
Sbjct: 72 KVKLEIWDTAGQERYRSLTPM 92
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 18/104 (17%)
Query: 83 LCKSNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142
+ + SP+ R S + P P KI+V+GDS+VGKTS V F NKF + NT+G
Sbjct: 1 MASNESPNSRRSSLNSVPVPP-----FKIVVLGDSSVGKTSLVHRFTTNKFDLHTSNTIG 55
Query: 143 VDFSTKLLSHKKYGGRPYGTFSPIQTPSYLILITGDSTVGKTSY 186
F TK+ FSP Q + + + T G+ Y
Sbjct: 56 AAFITKV-------------FSPFQNEEHKVKLEIWDTAGQERY 86
>gi|224496098|ref|NP_001139069.1| RAB3D, member RAS oncogene family, a [Danio rerio]
Length = 223
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 121/215 (56%), Gaps = 20/215 (9%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD A
Sbjct: 26 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNE---KRVKLQIWDTA 82
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G ++M+D+TN+ SF +V W + + DN + +L+ +
Sbjct: 83 GQERYRTITTAYYRGAMGFLLMYDITNQDSFYAVQDWATQIKTYS-WDNAQV---ILVGN 138
Query: 361 KCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL DR V + + + ++ F + E S+K+++ ++ LVD IIC K E++
Sbjct: 139 KCDLEDDRLVAREDGQRLANELGF-QFFEASAKDNINVKQVFERLVD-IICDKM--NESL 194
Query: 420 ERKSSIRLSEE--TLRDDQPKKLVPADKVSTYCWC 452
+ SI +++ +L+D P D S C C
Sbjct: 195 DTDPSILTNQKGPSLQD------TPPDGQSGGCGC 223
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 25 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 67
>gi|148234955|ref|NP_001079974.1| RAB35, member RAS oncogene family [Xenopus laevis]
gi|34784624|gb|AAH57747.1| MGC69101 protein [Xenopus laevis]
Length = 201
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 105/174 (60%), Gaps = 10/174 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+ +SF +V +W H+++ C D+ + +L+ +
Sbjct: 66 GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DD---VCRILVGN 120
Query: 361 KCDLPDRQ-VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K D PDR+ VE + Q + + E S+K++L +E+ N + + ++ +K+
Sbjct: 121 KNDDPDRKVVETEDAYKFAAQMD-IRLFETSAKDNLNVEEMFNCITELVLRAKK 173
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWD 63
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
D + + K+L+IGDS VGK+S + F N F +Y T+GVDF +
Sbjct: 2 ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIR 48
>gi|410922738|ref|XP_003974839.1| PREDICTED: ras-related protein Rab-3C-like [Takifugu rubripes]
Length = 219
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 102/176 (57%), Gaps = 10/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 22 FKLLIIGNSSVGKTSFLFRYADDAFTSAFVSTVGIDFKVKTVYKND---KRIKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L +
Sbjct: 79 GQERYRTITTAYYRGAMGFILMYDITNEESFGAVQDWSTQIKTYS-WDNAQV---VLAGN 134
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ +R V ++ + Q F + E S+K+++ ++ + LVD +IC K E
Sbjct: 135 KCDMDEERVVSVDSGRLLAEQLGF-EFFETSAKDNINVKQTFERLVD-LICDKMSE 188
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 22 FKLLIIGNSSVGKTSFLFRYADDAFTSAFVSTVGIDFKVKTVYKND---KRIKLQIWD 76
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 21 MFKLLIIGNSSVGKTSFLFRYADDAFTSAFVSTVGIDFKVKTV 63
>gi|340055447|emb|CCC49766.1| Rab11A GTPase [Trypanosoma vivax Y486]
Length = 219
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 95/169 (56%), Gaps = 7/169 (4%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
T+ ++I GDS VGK++ + + N+F + T+GV+F TK + K GR K+QIWD
Sbjct: 7 TFKVVIVGDSGVGKSNLMTRYTANEFSQDTPATIGVEFMTKSI---KIEGRDAKVQIWDT 63
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ +SR Y + G ++++D+TN+ SF+S+ W +L + A L+
Sbjct: 64 AGQERFRAISRSIYHGAKGAVLVYDITNQTSFDSIPTWLQELRAFV----PATCSIFLIG 119
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+KCDL +V E+ + N +S++E S+ E ++ + +L +
Sbjct: 120 NKCDLEHLRVVKKEVADRFARENGLSFLETSALEKTNVDKAFEWLAKSV 168
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
D K++++GDS VGK++ + + N+F + T+GV+F TK
Sbjct: 3 DTNLTFKVVIVGDSGVGKSNLMTRYTANEFSQDTPATIGVEFMTK 47
>gi|383858778|ref|XP_003704876.1| PREDICTED: ras-related protein Rab-7a-like [Megachile rotundata]
Length = 207
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 99/188 (52%), Gaps = 3/188 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF +K + + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVSKKFSNQYKATIGADFLSKEV---RVDDRIVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD++ SF+S+ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVSAPSSFKSLDSWRDEFLIQASPRDQDNFPFVVLGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL R V + C N + + E S+KE + +E + + + + E E
Sbjct: 128 DLESRAVSSKRAQQWCQSKNNIPYFETSAKEAINVEQAFQAIAKNALAQESEVELYNEFP 187
Query: 423 SSIRLSEE 430
I+L+ +
Sbjct: 188 DQIKLTND 195
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF +K + + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVSKKFSNQYKATIGADFLSKEV---RVDDRIVTMQIWD 63
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+LK++++GDS VGKTS + +V KF + YK T+G DF +K
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVSKKFSNQYKATIGADFLSK 48
>gi|330799117|ref|XP_003287594.1| Rab GTPase [Dictyostelium purpureum]
gi|325082380|gb|EGC35863.1| Rab GTPase [Dictyostelium purpureum]
Length = 202
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 97/160 (60%), Gaps = 9/160 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ GDS VGK+ + F N+F D+Y +T+GVDF + + + G+ +KLQIWD AGQ
Sbjct: 36 ILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTI---ELDGKKIKLQIWDTAGQ 92
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ ++ YY+ + G II++D+T+ SF S+ +W D+D + ++L L++ +KC
Sbjct: 93 ERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDR---FASPSVLK-LIVGNKC 148
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL D R V+ + + N + +E S+KE I+D+
Sbjct: 149 DLKDKRNVDFKVAKKFADELN-IPIMETSAKESTAIDDAF 187
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 79 PARELCKSNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYK 138
P++E S + + AS+ G E P + + +LKILVIGDS VGK+ + F N+F D+Y
Sbjct: 5 PSKEGSGSFTTTSSASLHGSESHP-EYDMLLKILVIGDSGVGKSCMLLRFADNRFTDSYI 63
Query: 139 NTVGVDFSTKLL 150
+T+GVDF + +
Sbjct: 64 STIGVDFCIRTI 75
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
IL+ GDS VGK+ + F N+F D+Y +T+GVDF + + + G+ +KLQIWD
Sbjct: 36 ILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTI---ELDGKKIKLQIWD 88
>gi|347964252|ref|XP_311197.3| AGAP000671-PA [Anopheles gambiae str. PEST]
gi|333467445|gb|EAA06827.3| AGAP000671-PA [Anopheles gambiae str. PEST]
Length = 204
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 101/170 (59%), Gaps = 9/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTIELR---GKKIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSF+++V+W ++D D + ++L +
Sbjct: 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIVKWLRNIDEHANED----VEKMILGN 122
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCD+ D R V E + +++ + ++E S+K + IE + L + I+
Sbjct: 123 KCDMADKRAVRKERGENIAREHD-IRFMETSAKANTNIELAFRELAEAIL 171
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F + F + +T+G+DF K + + G+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTIELR---GKKIKLQIWD 64
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS VGKT + F + F + +T+G+DF K +
Sbjct: 9 LFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTI 51
>gi|154335561|ref|XP_001564019.1| putative rab7 GTP binding protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|18997099|gb|AAL83291.1|AF474147_1 Rab7-like protein [Leishmania braziliensis]
gi|134061050|emb|CAM38069.1| putative rab7 GTP binding protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 223
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 105/216 (48%), Gaps = 29/216 (13%)
Query: 235 PIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 294
P++ I+I GDS VGKTS + +V + F YK T+G DF +K + + GR V L
Sbjct: 2 PMKRQLLKIIILGDSGVGKTSLMHQYVSHTFDSRYKATIGADFLSKDV---EVNGRVVTL 58
Query: 295 QIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP 354
QIWD AGQ+R+ + +Y+ +D CI++FD+T ++SF + W + +
Sbjct: 59 QIWDTAGQERFQSLGSAFYRGADACILVFDVTQQESFAHIGSWMEEFSIQ-----AGRRD 113
Query: 355 CLLLASKCDLPD-RQVEINEIEAVCHQYNF--------------------MSWIEVSSKE 393
+L+ +K DL D RQV ++A C + N M + E S+KE
Sbjct: 114 SVLVGNKTDLEDRRQVASKTVQAWCAKQNAAAANANNGAGAGADDSAAPEMKYFETSAKE 173
Query: 394 HLMIEDSMNFLVDRIICSKRMEEEAVERKSSIRLSE 429
+ +ED+ + + K EE ++ L++
Sbjct: 174 NAGVEDAFIAVAQLALAKKATVEETTPMPQTVNLNQ 209
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 165 PIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
P++ I+I GDS VGKTS + +V + F YK T+G DF +K + + GR V L
Sbjct: 2 PMKRQLLKIIILGDSGVGKTSLMHQYVSHTFDSRYKATIGADFLSKDV---EVNGRVVTL 58
Query: 225 QIWD 228
QIWD
Sbjct: 59 QIWD 62
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+LKI+++GDS VGKTS + +V + F YK T+G DF +K
Sbjct: 7 LLKIIILGDSGVGKTSLMHQYVSHTFDSRYKATIGADFLSK 47
>gi|19918938|dbj|BAB88682.1| small GTPase AvaA [Emericella nidulans]
gi|259489719|tpe|CBF90222.1| TPA: Small GTPase AvaA [Source:UniProtKB/TrEMBL;Acc:Q8TGD9]
[Aspergillus nidulans FGSC A4]
Length = 205
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 103/194 (53%), Gaps = 5/194 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF +YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSGSYKATIGADFLTKEV---LVDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+ N KSFE++ W+ + + + P +++ +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVNNSKSFEALDSWRDEFLIQASPRDPESFPFVVIGNKI 127
Query: 363 DLPDRQVEINEIEAV--CHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
D+ + + I+ A+ C + + E S+KE + +E + + + + EE +
Sbjct: 128 DMEESKRMISSKRAMTFCQSKGNIPYFETSAKEAVNVEQAFEVIARSALAQEEAEEYGGD 187
Query: 421 RKSSIRLSEETLRD 434
I + + T RD
Sbjct: 188 YTDPINIHDTTERD 201
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF +YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSGSYKATIGADFLTKEV---LVDDRLVTMQIWD 63
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF +YK T+G DF TK
Sbjct: 3 SRKKVMLKVIILGDSGVGKTSLMNQYVNKKFSGSYKATIGADFLTK 48
>gi|307204727|gb|EFN83308.1| Ras-related protein Rab-7a [Harpegnathos saltator]
Length = 207
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 99/188 (52%), Gaps = 3/188 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVED---RIVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD++ SF+S+ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVSAPTSFKSLDSWRDEFLIQASPRDPDNFPFVVLGNKV 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL R V + C N + + E S+KE + +E + + + + E E
Sbjct: 128 DLESRAVSSKRAQQWCQSKNNIPYFETSAKEAINVEQAFQTIAKNALAQESEVELYNEFP 187
Query: 423 SSIRLSEE 430
I+L+ +
Sbjct: 188 DQIKLTND 195
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVED---RIVTMQIWD 63
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>gi|348522271|ref|XP_003448649.1| PREDICTED: ras-related protein Rab-35-like [Oreochromis niloticus]
Length = 201
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 105/174 (60%), Gaps = 10/174 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+ +SF +V +W H+++ C D+ + +L+ +
Sbjct: 66 GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DD---VCRILVGN 120
Query: 361 KCDLPDRQ-VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K D P+ + VE + + Q +S E S+KE++ +E+ N + + ++ +K+
Sbjct: 121 KNDDPNSKVVETTDAQKFAEQMG-ISLFETSAKENVNVEEMFNCITELVLKAKK 173
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWD 63
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
D + + K+L+IGDS VGK+S + F N F +Y T+GVDF +
Sbjct: 2 ARDYDYLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIR 48
>gi|444723565|gb|ELW64216.1| Ras-related protein Rab-39A [Tupaia chinensis]
Length = 228
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 99/181 (54%), Gaps = 11/181 (6%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYG 288
+ I I + +++ GDSTVGK+ + F Q +F TVGVDF ++LL +
Sbjct: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP-- 58
Query: 289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD 348
G+ +KLQ+WD AGQ+R ++R YY+NS G ++FD+TNR+SFE V W L+ +
Sbjct: 59 GKRIKLQLWDTAGQERRESITRSYYRNSVGGFLVFDITNRRSFEHVKDW---LEEAKMHV 115
Query: 349 NGAMLPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
+ LL+ KCDL RQV E E + M +IE S+K+ +E+S L
Sbjct: 116 QPFRIVFLLVGHKCDLASQRQVTREEAEKLSADCG-MKYIETSAKDATNVEESFTILTRD 174
Query: 408 I 408
I
Sbjct: 175 I 175
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
+ +++ GDSTVGK+ + F Q +F TVGVDF ++LL + G+ +KLQ+
Sbjct: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP--GKRIKLQL 66
Query: 227 WD 228
WD
Sbjct: 67 WD 68
>gi|443723889|gb|ELU12108.1| hypothetical protein CAPTEDRAFT_157234 [Capitella teleta]
Length = 212
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 110/213 (51%), Gaps = 19/213 (8%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD+ VGKT VQ F FL+ NT+GVDF+ K ++ G VKLQ+WD A
Sbjct: 17 FKIVLIGDAGVGKTCVVQRFKTGTFLERQGNTIGVDFTMKTIN---LDGNKVKLQVWDTA 73
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++ I+ +D+T +SFE+ +W D+ A + LL+ +
Sbjct: 74 GQERFRTITQSYYRSANAVIMAYDITKLQSFENCQRWLDDVKKYA----AASIVKLLIGN 129
Query: 361 KCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K DL R+V+ + + +N + IE S+K++ IED C ++ E
Sbjct: 130 KNDLETQREVKFSSARQFANHHNMIDAIETSAKDNKNIED----------CFVKIATELK 179
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
+ EET D Q L D + +C C
Sbjct: 180 RIHGGMTQLEETT-DAQRISLDTRDVRTGFCNC 211
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD+ VGKT VQ F FL+ NT+GVDF+ K ++ G VKLQ+WD
Sbjct: 17 FKIVLIGDAGVGKTCVVQRFKTGTFLERQGNTIGVDFTMKTIN---LDGNKVKLQVWD 71
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 100 PRPSDAET----VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P P D + + KI++IGD+ VGKT VQ F FL+ NT+GVDF+ K ++
Sbjct: 4 PGPLDQDDQFDYLFKIVLIGDAGVGKTCVVQRFKTGTFLERQGNTIGVDFTMKTIN 59
>gi|388581470|gb|EIM21778.1| hypothetical protein WALSEDRAFT_32360 [Wallemia sebi CBS 633.66]
Length = 208
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 105/200 (52%), Gaps = 5/200 (2%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
+P + ++I GDS VGKTS + +V +F + YK T+G DF TK + R V
Sbjct: 3 APKKTVLLKVIILGDSGVGKTSLMNQYVNKRFSNQYKATIGADFLTKEVV---VDDRVVT 59
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
+Q+WD AGQ+R+ + +Y+ +D C++++D+ N KSFE++ W+ + + +
Sbjct: 60 MQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNAKSFETLDSWRDEFLIQASPQDPVNF 119
Query: 354 PCLLLASKCDLPDRQVEINEIEAV--CHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
P ++L +K D+ D + +++ +A C + + E S+KE + +E + + +
Sbjct: 120 PFVVLGNKIDMEDSKRAVSQKKATSWCQSKGNIPYFETSAKEAINVEQAFQTIARNALVQ 179
Query: 412 KRMEEEAVERKSSIRLSEET 431
+ E IR+ +E+
Sbjct: 180 EAEVELYANYPDPIRIDQES 199
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
+P +T ++I GDS VGKTS + +V +F + YK T+G DF TK + R V
Sbjct: 3 APKKTVLLKVIILGDSGVGKTSLMNQYVNKRFSNQYKATIGADFLTKEVV---VDDRVVT 59
Query: 224 LQIWD 228
+Q+WD
Sbjct: 60 MQLWD 64
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 102 PSDAETVL-KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
P+ +TVL K++++GDS VGKTS + +V +F + YK T+G DF TK
Sbjct: 2 PAPKKTVLLKVIILGDSGVGKTSLMNQYVNKRFSNQYKATIGADFLTK 49
>gi|288965976|gb|ADC79634.1| Ras family protein [Ditylenchus destructor]
Length = 211
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 103/169 (60%), Gaps = 8/169 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD VGKT VQ F +++ T+GVDF+ K L G+ +KLQIWD
Sbjct: 11 FKIVLIGDMGVGKTCVVQRFKNGSYIEKQGTTIGVDFTMKTLI---VDGKRIKLQIWDTG 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D+T R+S ES+ +W D+ SK + N A +L+ +
Sbjct: 68 GQERFRTITQSYYRSANGIILCYDITCRQSSESLHRWIDDV-SKFAVPNVAK---ILIGT 123
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
K DL D R ++ E E +C +N + ++EVSSK ++ ++ N L ++
Sbjct: 124 KADLQDQRVIDPEEGEQLCRAHNMIKFLEVSSKSNVNVDVVFNELARQL 172
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD VGKT VQ F +++ T+GVDF+ K L G+ +KLQIWD
Sbjct: 11 FKIVLIGDMGVGKTCVVQRFKNGSYIEKQGTTIGVDFTMKTLI---VDGKRIKLQIWD 65
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGD VGKT VQ F +++ T+GVDF+ K L
Sbjct: 10 LFKIVLIGDMGVGKTCVVQRFKNGSYIEKQGTTIGVDFTMKTL 52
>gi|270010835|gb|EFA07283.1| hypothetical protein TcasGA2_TC014518 [Tribolium castaneum]
Length = 208
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 102/173 (58%), Gaps = 10/173 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F ++ F + +T+G+DF + + G+ +KLQIWD A
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNTTFISTIGIDFKIRTID---LDGKKIKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSFE++ W +++ D + +LL +
Sbjct: 66 GQERFRTITTAYYRGAMGIMLVYDITNEKSFENIKNWIRNIEENASAD----VEKMLLGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KC+L + RQV E + +Y + +IE S+K + +E++ F + R I +K
Sbjct: 122 KCELEEKRQVSKERGEQLAIEYG-IKFIETSAKASIRVEEAF-FTLARDIKAK 172
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 167 QTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
+T YL +L+ GDS VGKT + F ++ F + +T+G+DF + + G+ +KL
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNTTFISTIGIDFKIRTID---LDGKKIKL 59
Query: 225 QIWD 228
QIWD
Sbjct: 60 QIWD 63
>gi|156554564|ref|XP_001605676.1| PREDICTED: ras-related protein Rab-27A-like [Nasonia vitripennis]
Length = 211
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 122/214 (57%), Gaps = 15/214 (7%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP--VKLQIWDIA 300
L G+S VGKTS++ + + F ++ +TVG+DF K + HK G+P V+LQ+WD A
Sbjct: 9 FLALGNSGVGKTSFLYQYTEGTFNPSFHSTVGIDFKEKRVVHKSANGQPQTVQLQLWDTA 68
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ +Y+ S G ++FDLTN +SF +V W L + + ++ C +
Sbjct: 69 GQERFRSLTTAFYRESMGFFLLFDLTNEQSFLAVRDWLDQLRTHAYCEEPDIILC---GN 125
Query: 361 KCDLPDRQVEINEIEA--VCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
K DL R+V I+E +A + ++YN + ++E S+ +E ++ L+DR++ R + +
Sbjct: 126 KSDLEARRV-ISEQKARELANKYNLV-YLETSASTGQNVERAVEILLDRVM---RRIDTS 180
Query: 419 VERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
V+R SI ++ LR Q + + K + C+C
Sbjct: 181 VDR--SILPHQKLLRCHQSLEAEASPKKKS-CFC 211
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP--VKLQIWD 228
L G+S VGKTS++ + + F ++ +TVG+DF K + HK G+P V+LQ+WD
Sbjct: 9 FLALGNSGVGKTSFLYQYTEGTFNPSFHSTVGIDFKEKRVVHKSANGQPQTVQLQLWD 66
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 159
D + +LK L +G+S VGKTS++ + + F ++ +TVG+DF K + HK G+P
Sbjct: 2 DYDYLLKFLALGNSGVGKTSFLYQYTEGTFNPSFHSTVGIDFKEKRVVHKSANGQP 57
>gi|383854082|ref|XP_003702551.1| PREDICTED: ras-related protein Rab-3-like [Megachile rotundata]
Length = 264
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 103/178 (57%), Gaps = 14/178 (7%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 63 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWDT 118
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDS-KCILDNGAMLPCLLL 358
AGQ+RY ++ YY+ + G I+M+D+TN +SF SV W + + C DN + +L+
Sbjct: 119 AGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWVTQIKTYSC--DNAQV---ILV 173
Query: 359 ASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
+KCD+ +R + + + Q + + E S+KE++ I+ LVD IIC K E
Sbjct: 174 GNKCDMDEERVISFERGKQLADQLG-VQFFETSAKENINIKTVFEQLVD-IICDKMSE 229
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H K VKLQIWD
Sbjct: 63 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDK----RVKLQIWD 117
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 88 SPSPRASVIGFEPR------PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
SP R + G +P+ + + + K+L+IG+S+VGKTS++ + + F + +TV
Sbjct: 36 SPQNRLPMAGQDPKMQKEAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV 95
Query: 142 GVDFSTK-LLSHKK 154
G+DF K + H K
Sbjct: 96 GIDFKVKTVFRHDK 109
>gi|290561625|gb|ADD38212.1| Ras-related protein Rab-18-B [Lepeophtheirus salmonis]
Length = 204
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 105/182 (57%), Gaps = 7/182 (3%)
Query: 235 PIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 294
PI + + +LI G+S VGK+S + F ++ F ++ T+GVDF K L+ + G VKL
Sbjct: 5 PI-LTSLKLLIIGESGVGKSSLLLRFTEDAFDPDHSATIGVDFKVKTLTVQ---GNRVKL 60
Query: 295 QIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP 354
IWD AGQ+R+ ++ YY+ G I+++D+TNR SF +V W ++LD+ + +
Sbjct: 61 AIWDTAGQERFRTLTPSYYRGGQGAILVYDVTNRDSFSNVENWLNELDTYATNHD---IV 117
Query: 355 CLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
+L+ +KCDL +++ E C + + M +IE S+K ++ + LV+ II + +
Sbjct: 118 KMLVGNKCDLEEKRAISKEEGQKCARKHRMMFIESSAKTREGVQLAFEELVENIIQTPEL 177
Query: 415 EE 416
E
Sbjct: 178 WE 179
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
T LK+L+IG+S VGK+S + F ++ F ++ T+GVDF K L+
Sbjct: 8 TSLKLLIIGESGVGKSSLLLRFTEDAFDPDHSATIGVDFKVKTLT 52
>gi|117939083|dbj|BAF36695.1| Small G Protein RAB [Symbiotic protist of Reticulitermes speratus]
Length = 196
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 107/198 (54%), Gaps = 11/198 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GDS VGKT + F NKF YK T+G DF TK + R V +QIWD AG
Sbjct: 2 VVVLGDSGVGKTCLINQFALNKFSAQYKATIGADFLTKEVV---VDNRQVTMQIWDTAGL 58
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + Y+ +D CI+++D+T K+FE++ WK + + + P +LL +K
Sbjct: 59 ERFQSLGVALYRGADACILVYDVTQPKTFENLDGWKEEFLFQGSPQDPDNFPFMLLGNKI 118
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
DL + R V+ + E CHQ + + E S+K++ +E + + RI S+ ++++ +
Sbjct: 119 DLEEQRVVQAKKAENWCHQKGDIKYFETSAKDNSNVEQAF-LEIARIGLSREVQDDDIPA 177
Query: 422 KSSIRLSEETLRDDQPKK 439
S + + DD+ KK
Sbjct: 178 PSIV------VDDDKNKK 189
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ GDS VGKT + F NKF YK T+G DF TK + R V +QIWD
Sbjct: 2 VVVLGDSGVGKTCLINQFALNKFSAQYKATIGADFLTKEVV---VDNRQVTMQIWD 54
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
K++V+GDS VGKT + F NKF YK T+G DF TK
Sbjct: 1 KVVVLGDSGVGKTCLINQFALNKFSAQYKATIGADFLTK 39
>gi|76779772|gb|AAI06309.1| Rab3d protein [Xenopus laevis]
Length = 217
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 102/176 (57%), Gaps = 10/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD A
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNE---KRVKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G ++M+D++N +SF +V W + + DN + LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFLLMYDISNLESFNAVQDWATQIKTYS-WDNAQV---LLVGN 135
Query: 361 KCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCDL DR + + + + F + E S+K+++ ++ LVD IIC K E
Sbjct: 136 KCDLEDDRVIAAEDGRKLAEELGF-EFFEASAKDNINVKQVFERLVD-IICEKMNE 189
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + VKLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNE---KRVKLQIWD 77
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVK 62
>gi|383852954|ref|XP_003701990.1| PREDICTED: ras-related protein Rab-35-like [Megachile rotundata]
Length = 201
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 108/193 (55%), Gaps = 10/193 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +Y T+GVDF + + G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFNGSYITTIGVDFKIQTVD---IDGERVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+ SF +V +W H+++ C + N +L+ +
Sbjct: 66 GQERFRTITSTYYRGTHGVIVVYDVTSGDSFANVKRWLHEIEQNCDVVNR-----VLVGN 120
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK--RMEEEA 418
K D P+ +V + E + E S+K+++ +++ + +++ +K R E +A
Sbjct: 121 KNDSPNEKVVLTEDAQRFANQMGIQLFETSAKDNINVQEMFMAITRQVLRTKKERKERQA 180
Query: 419 VERKSSIRLSEET 431
++ ++ L + T
Sbjct: 181 IQTSETVNLRKST 193
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F +Y T+GVDF + + G VKLQIWD
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFNGSYITTIGVDFKIQTVD---IDGERVKLQIWD 63
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
+ K+L+IGDS VGK+S + F N F +Y T+GVDF
Sbjct: 8 LFKLLIIGDSGVGKSSLLLRFADNTFNGSYITTIGVDF 45
>gi|403349661|gb|EJY74271.1| Ras-like GTP-binding protein YPT1, putative [Oxytricha trifallax]
Length = 428
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 90/162 (55%), Gaps = 6/162 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y I++ G+S GKTS + F + F +NY T+GVDF K L K R +K+QIWD A
Sbjct: 101 YKIVLIGESNTGKTSMLVRFADSVFNENYLCTIGVDFKIKTL---KIDNRIIKMQIWDTA 157
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +S YY+NS GC+ ++D+ NR SF+S+ + + D +L+ +
Sbjct: 158 GQERFRSISHAYYRNSHGCVAVYDIANRASFDSIEEQIQSFIAYSAQD--VARNIILVGN 215
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL D R+V E + + N + E S+K + ++DS
Sbjct: 216 KTDLDDKRKVPFEEAVRLGKKLNLAAVFETSAKNNDSVDDSF 257
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 163 FSPIQTPS-YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 221
FSP + Y I++ G+S GKTS + F + F +NY T+GVDF K L K R
Sbjct: 92 FSPYDFDALYKIVLIGESNTGKTSMLVRFADSVFNENYLCTIGVDFKIKTL---KIDNRI 148
Query: 222 VKLQIWD 228
+K+QIWD
Sbjct: 149 IKMQIWD 155
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 97 GFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
GF P DA + KI++IG+S GKTS + F + F +NY T+GVDF K L
Sbjct: 91 GFSPYDFDA--LYKIVLIGESNTGKTSMLVRFADSVFNENYLCTIGVDFKIKTL 142
>gi|405976260|gb|EKC40773.1| Ras-related protein Rab-10 [Crassostrea gigas]
Length = 212
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 103/170 (60%), Gaps = 9/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F + F + +T+G+DF K + + GG+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKTCLLFRFSDDAFNTTFISTIGIDFKIKTV---ELGGKKIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN K+FE++ +W ++D D + ++L +
Sbjct: 67 GQERFHTITTSYYRGAMGIMLVYDITNPKTFENISKWLRNIDEHANED----VEKMILGN 122
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCD+ + RQV + EA+ ++ + ++E S+K ++ +E + L I+
Sbjct: 123 KCDMENKRQVSKDRGEAIAKEHE-IPFLETSAKANINVEKAFMDLAQAIL 171
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F + F + +T+G+DF K + + GG+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKTCLLFRFSDDAFNTTFISTIGIDFKIKTV---ELGGKKIKLQIWD 64
>gi|432873564|ref|XP_004072279.1| PREDICTED: ras-related protein Rab-3C-like [Oryzias latipes]
Length = 219
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 101/176 (57%), Gaps = 10/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 22 FKLLIIGNSSVGKTSFLFRYADDAFTSAFVSTVGIDFKVKTVYKND---KRIKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L +
Sbjct: 79 GQERYRTITTAYYRGAMGFILMYDITNEESFGAVQDWSTQIKTYS-WDNAQV---VLAGN 134
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ +R V + + Q F + E S+K+++ ++ + LVD +IC K E
Sbjct: 135 KCDMEEERVVSVESGRLLAEQLGF-EFFETSAKDNINVKQTFERLVD-LICDKMSE 188
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 22 FKLLIIGNSSVGKTSFLFRYADDAFTSAFVSTVGIDFKVKTVYKND---KRIKLQIWD 76
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 21 MFKLLIIGNSSVGKTSFLFRYADDAFTSAFVSTVGIDFKVKTV 63
>gi|225712132|gb|ACO11912.1| Ras-related protein Rab-18 [Lepeophtheirus salmonis]
gi|290462753|gb|ADD24424.1| Ras-related protein Rab-18-B [Lepeophtheirus salmonis]
Length = 204
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 105/182 (57%), Gaps = 7/182 (3%)
Query: 235 PIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 294
PI + + +LI G+S VGK+S + F ++ F ++ T+GVDF K L+ + G VKL
Sbjct: 5 PI-LTSLKLLIIGESGVGKSSLLLRFTEDAFDPDHSATIGVDFKVKTLTVQ---GNRVKL 60
Query: 295 QIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP 354
IWD AGQ+R+ ++ YY+ G I+++D+TNR SF +V W ++LD+ + +
Sbjct: 61 AIWDTAGQERFRTLTPSYYRGGQGAILVYDVTNRDSFSNVENWLNELDTYATNHD---IV 117
Query: 355 CLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
+L+ +KCDL +++ E C + + M +IE S+K ++ + LV+ II + +
Sbjct: 118 KMLVGNKCDLEEKRAISKEEGQKCARKHRMMFIESSAKTREGVQLAFEELVENIIQTPEL 177
Query: 415 EE 416
E
Sbjct: 178 WE 179
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
T LK+L+IG+S VGK+S + F ++ F ++ T+GVDF K L+
Sbjct: 8 TSLKLLIIGESGVGKSSLLLRFTEDAFDPDHSATIGVDFKVKTLT 52
>gi|354478940|ref|XP_003501672.1| PREDICTED: ras-related protein Rab-13-like [Cricetulus griseus]
gi|81909832|sp|Q5KTJ6.1|RAB13_MESAU RecName: Full=Ras-related protein Rab-13; Flags: Precursor
gi|57157445|dbj|BAD83700.1| Rab13 [Mesocricetus auratus]
Length = 203
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 100/170 (58%), Gaps = 9/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F ++ F + Y +T+G+DF + + + G+ +KLQ+WD A
Sbjct: 9 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIE---GKRIKLQVWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNG-AMLPCLLLA 359
GQ+R+ ++ YY+ + G I+++D+T+ KSFE++ W K I +N A + LLL
Sbjct: 66 GQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNW-----MKSIKENASAGVERLLLG 120
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+KCD+ ++ + E + + + + E S+K + ++++ N L I+
Sbjct: 121 NKCDMEAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLARDIL 170
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F ++ F + Y +T+G+DF + + + G+ +KLQ+WD
Sbjct: 9 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIE---GKRIKLQVWD 63
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS VGKT + F ++ F + Y +T+G+DF +
Sbjct: 8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIR 48
>gi|410922303|ref|XP_003974622.1| PREDICTED: ras-related protein Rab-35-like [Takifugu rubripes]
Length = 201
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 105/174 (60%), Gaps = 10/174 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD A
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+ +SF +V +W H+++ C D+ + +L+ +
Sbjct: 66 GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DD---VCRILVGN 120
Query: 361 KCDLPDRQ-VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K D P+ + VE + + Q ++ E S+KE+L +E+ N + + ++ +K+
Sbjct: 121 KNDDPNSKVVETTDAQKFAEQMG-INLFETSAKENLNVEEMFNCITELVLRAKK 173
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD
Sbjct: 9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWD 63
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
D + + K+L+IGDS VGK+S + F N F +Y T+GVDF +
Sbjct: 2 ARDYDYLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIR 48
>gi|383864075|ref|XP_003707505.1| PREDICTED: ras-related protein Rab-8A-like isoform 2 [Megachile
rotundata]
Length = 210
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 115/204 (56%), Gaps = 11/204 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F ++ F + +T+G+DF + + + G+ +KLQIWD A
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNTTFISTIGIDFKIRTI---ELDGKKIKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSFE++ W +++ D + +LL +
Sbjct: 66 GQERFRTITTAYYRGAMGIMLVYDVTNEKSFENIKNWIRNIEENASAD----VEKMLLGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KC+L + RQV E + +Y + ++E S+K + +E++ L I +ME++
Sbjct: 122 KCELTEKRQVSKERGEQLAVEYG-IKFMETSAKSSINVEEAFYTLARDI--KAKMEKKLK 178
Query: 420 ERKSSIRLSEETLRDDQPKKLVPA 443
E + + L+ +P++ P+
Sbjct: 179 EASNPPKGGGHQLKASEPQRKPPS 202
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 167 QTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
+T YL +L+ GDS VGKT + F ++ F + +T+G+DF + + + G+ +KL
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNTTFISTIGIDFKIRTI---ELDGKKIKL 59
Query: 225 QIWD 228
QIWD
Sbjct: 60 QIWD 63
>gi|297664935|ref|XP_002810871.1| PREDICTED: ras-related protein Rab-3B [Pongo abelii]
Length = 219
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 111/201 (55%), Gaps = 11/201 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H+K VKLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK----RVKLQIWDT 78
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+
Sbjct: 79 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQV---ILVG 134
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
+KCD+ + +V E + + + E S+KE++ + + LVD IC K M +
Sbjct: 135 NKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVD-AICDK-MSDSLD 192
Query: 420 ERKSSIRLSEETLRDDQPKKL 440
S + S+ T D P+ L
Sbjct: 193 TDPSMLGSSKNTRLSDTPQLL 213
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 5/59 (8%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H+K VKLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK----RVKLQIWD 77
Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKK 154
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K + H+K
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK 69
>gi|354468180|ref|XP_003496545.1| PREDICTED: ras-related protein Rab-3B-like [Cricetulus griseus]
gi|81870701|sp|Q5KTJ7.1|RAB3B_MESAU RecName: Full=Ras-related protein Rab-3B
gi|57157443|dbj|BAD83699.1| Rab3B [Mesocricetus auratus]
Length = 219
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 100/173 (57%), Gaps = 10/173 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H+K VKLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK----RVKLQIWDT 78
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+
Sbjct: 79 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQV---ILVG 134
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
+KCD+ + +V E + + + E S+KE++ + + LVD IC K
Sbjct: 135 NKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVD-AICDK 186
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 5/59 (8%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H+K VKLQIWD
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK----RVKLQIWD 77
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKK 154
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K + H+K
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK 69
>gi|154422723|ref|XP_001584373.1| hypothetical protein [Trichomonas vaginalis G3]
gi|62736316|gb|AAX97487.1| small Rab GTPase RabX10 [Trichomonas vaginalis]
gi|121918620|gb|EAY23387.1| hypothetical protein TVAG_070500 [Trichomonas vaginalis G3]
Length = 196
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 98/170 (57%), Gaps = 10/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S VGKT + F N F +N+ +T+GVDF + + G+ VKLQIWD A
Sbjct: 8 FKLLIVGESGVGKTCMLLRFADNSFEENFLSTIGVDFKVREID---VDGKRVKLQIWDSA 64
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+N G II++D+T +F V +W D+ + I N +P LL+ +
Sbjct: 65 GQERFRNITTSYYRNCGGIIIVYDITRHDTFTKVTEWIEDV--RKITSN---VPLLLVGN 119
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
K DL D R V E + + ++ + +E S+K L IED+ + ++I
Sbjct: 120 KADLEDKRAVTEQEAKELANRMGLV-LLETSAKTALNIEDAFKQISRQLI 168
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S VGKT + F N F +N+ +T+GVDF + + G+ VKLQIWD
Sbjct: 8 FKLLIVGESGVGKTCMLLRFADNSFEENFLSTIGVDFKVREID---VDGKRVKLQIWD 62
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L++G+S VGKT + F N F +N+ +T+GVDF +
Sbjct: 7 LFKLLIVGESGVGKTCMLLRFADNSFEENFLSTIGVDFKVR 47
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,242,944,209
Number of Sequences: 23463169
Number of extensions: 312998540
Number of successful extensions: 926362
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 13021
Number of HSP's successfully gapped in prelim test: 8134
Number of HSP's that attempted gapping in prelim test: 859760
Number of HSP's gapped (non-prelim): 56611
length of query: 452
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 306
effective length of database: 8,933,572,693
effective search space: 2733673244058
effective search space used: 2733673244058
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)