BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14768
(452 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 111 bits (278), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 99/162 (61%), Gaps = 8/162 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWDTA 86
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D+T R SF SV W D+ G+ + LL+ +
Sbjct: 87 GQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA----GSNIVQLLIGN 142
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL + R+V + E +++ Y+ + IE S+K+ +E++
Sbjct: 143 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 159 PYGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 216
P G+ P + +L +++ GD++VGKT VQ F F + +T+GVDF+ K L +
Sbjct: 16 PRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ- 74
Query: 217 YGGRPVKLQIWD 228
G+ VKLQIWD
Sbjct: 75 --GKRVKLQIWD 84
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 97 GFEPRPS-----DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
G PR S + + K++++GD++VGKT VQ F F + +T+GVDF+ K L
Sbjct: 13 GLVPRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTL 71
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
D +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AG
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGL 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 99/172 (57%), Gaps = 8/172 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 62
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN LL+ +
Sbjct: 63 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNA---QVLLVGN 118
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCD+ D +V +E + + E S+K+++ ++ + LVD +IC K
Sbjct: 119 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEK 169
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYR---NDKRIKLQIWD 60
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 47
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 101/174 (58%), Gaps = 12/174 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H+K VKLQIWD
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK----RVKLQIWDT 79
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN +L+
Sbjct: 80 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNA---QVILVG 135
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
+KCD+ +R V + + + Q F + E S+KE++ + + LVD IC K
Sbjct: 136 NKCDMEEERVVPTEKGQLLAEQLGF-DFFEASAKENISVRQAFERLVD-AICDK 187
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 5/59 (8%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + H+K VKLQIWD
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK----RVKLQIWD 78
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKK 154
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K + H+K
Sbjct: 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK 70
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 104/174 (59%), Gaps = 10/174 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD A
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+ +SF +V +W H+++ C D+ + +L+ +
Sbjct: 67 GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DD---VCRILVGN 121
Query: 361 KCDLPDRQ-VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K D P+R+ VE + Q + E S+KE++ +E+ N + + ++ +K+
Sbjct: 122 KNDDPERKVVETEDAYKFAGQMG-IQLFETSAKENVNVEEMFNCITELVLRAKK 174
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWD 64
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
D + + K+L+IGDS VGK+S + F N F +Y T+GVDF +
Sbjct: 3 ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIR 49
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 98/175 (56%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +RY ++ YY+ + G I+ +D+TN +SF +V W + + DN + LL+ +
Sbjct: 66 GLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 121
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD D +V +E + + E S+K+++ ++ + LVD +IC K E
Sbjct: 122 KCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEKXSE 175
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 63
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 50
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 107/183 (58%), Gaps = 16/183 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-----GRPVK--LQ 295
+L GDS VGKT+++ + NKF + TVG+DF K + + G G+ K LQ
Sbjct: 28 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQ 87
Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
+WD AGQ+R+ ++ +++++ G ++MFDLT+++SF +V W L + +N +
Sbjct: 88 LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI--- 144
Query: 356 LLLASKCDLPDRQVEINEIEA--VCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
+L+ +K DLPD Q E+NE +A + +Y + + E S+ +E ++ L+D I+ KR
Sbjct: 145 VLIGNKADLPD-QREVNERQARELADKYG-IPYFETSAATGQNVEKAVETLLDLIM--KR 200
Query: 414 MEE 416
ME+
Sbjct: 201 MEQ 203
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 97 GFEPRPS-DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
G PR S D + ++K+L +GDS VGKT+++ + NKF + TVG+DF K + +
Sbjct: 13 GLVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQ 72
Query: 156 G 156
G
Sbjct: 73 G 73
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 171 YLI--LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-----GRPVK 223
YLI L GDS VGKT+++ + NKF + TVG+DF K + + G G+ K
Sbjct: 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFK 83
Query: 224 --LQIWD 228
LQ+WD
Sbjct: 84 VHLQLWD 90
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 101/168 (60%), Gaps = 7/168 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGK+ + F + + D+Y +T+GVDF + +S + + VKLQIWD A
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLEN---KTVKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G II++D+T+R SF++V QW ++D + ++N + LL+ +
Sbjct: 67 GQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEID-RYAMEN---VNKLLVGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
KCDL ++V ++ + + +IE S+K +E + + + I
Sbjct: 123 KCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGK+ + F + + D+Y +T+GVDF + +S + + VKLQIWD
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLEN---KTVKLQIWD 64
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ K+L+IGDS VGK+ + F + + D+Y +T+GVDF + +S
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTIS 52
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 95/161 (59%), Gaps = 7/161 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+S VGK+ + F + + ++Y +T+GVDF K + + G+ VKLQIWD A
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTV---ELDGKTVKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ S G II++D+T+++SF V W ++D + + LL+ +
Sbjct: 79 GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVLKLLVGN 134
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
KCDL D++V ++ N M ++E S+ + +ED+
Sbjct: 135 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 175
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ G+S VGK+ + F + + ++Y +T+GVDF K + + G+ VKLQIWD
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTV---ELDGKTVKLQIWD 76
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
PR S+ + + K+L+IG+S VGK+ + F + + ++Y +T+GVDF K
Sbjct: 13 PRGSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIK 61
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 95/161 (59%), Gaps = 7/161 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+S VGK+ + F + + ++Y +T+GVDF K + + G+ VKLQIWD A
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTV---ELDGKTVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ S G II++D+T+++SF V W ++D + + LL+ +
Sbjct: 66 GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVLKLLVGN 121
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
KCDL D++V ++ N M ++E S+ + +ED+
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ G+S VGK+ + F + + ++Y +T+GVDF K + + G+ VKLQIWD
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTV---ELDGKTVKLQIWD 63
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 31/46 (67%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S+ + + K+L+IG+S VGK+ + F + + ++Y +T+GVDF K
Sbjct: 3 SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIK 48
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 103/173 (59%), Gaps = 10/173 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F ++ F + +T+G+DF + + + G+ +KLQIWD A
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI---ELDGKRIKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSF+++ W +++ D + ++L +
Sbjct: 66 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD----VEKMILGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCD+ D RQV E + Y + ++E S+K ++ +E++ F + R I +K
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAF-FTLARDIKAK 172
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 167 QTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
+T YL +L+ GDS VGKT + F ++ F + +T+G+DF + + + G+ +KL
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI---ELDGKRIKL 59
Query: 225 QIWD 228
QIWD
Sbjct: 60 QIWD 63
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS VGKT + F ++ F + +T+G+DF + +
Sbjct: 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI 50
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 95/161 (59%), Gaps = 7/161 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+S VGK+ + F + + ++Y +T+GVDF K + + G+ VKLQIWD A
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTV---ELDGKTVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ S G II++D+T+++SF V W ++D + + LL+ +
Sbjct: 66 GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVLKLLVGN 121
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
KCDL D++V ++ N M ++E S+ + +ED+
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ G+S VGK+ + F + + ++Y +T+GVDF K + + G+ VKLQIWD
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTV---ELDGKTVKLQIWD 63
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 31/46 (67%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S+ + + K+L+IG+S VGK+ + F + + ++Y +T+GVDF K
Sbjct: 3 SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIK 48
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 103/173 (59%), Gaps = 10/173 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F ++ F + +T+G+DF + + + G+ +KLQIWD A
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI---ELDGKRIKLQIWDTA 63
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSF+++ W +++ D + ++L +
Sbjct: 64 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD----VEKMILGN 119
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
KCD+ D RQV E + Y + ++E S+K ++ +E++ F + R I +K
Sbjct: 120 KCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAF-FTLARDIKAK 170
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F ++ F + +T+G+DF + + + G+ +KLQIWD
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI---ELDGKRIKLQIWD 61
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS VGKT + F ++ F + +T+G+DF + +
Sbjct: 6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI 48
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 100/177 (56%), Gaps = 12/177 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
+ +L+ G+S+VGKTS++ + + F + +TVG+DF K + H K +KLQIWD
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDK----RIKLQIWDT 78
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+RY ++ YY+ + G ++M+D+ N++SF +V W + + DN +L+
Sbjct: 79 AGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS-WDNA---QVILVG 134
Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
+KCDL D R V + + F + E S+KE++ ++ LVD +IC K E
Sbjct: 135 NKCDLEDERVVPAEDGRRLADDLGF-EFFEASAKENINVKQVFERLVD-VICEKMNE 189
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 97 GFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKK 154
G PR SD + K+L+IG+S+VGKTS++ + + F + +TVG+DF K + H K
Sbjct: 13 GLVPRGSD--YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDK 69
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 91/171 (53%), Gaps = 3/171 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GD VGK+S + +V NKF +T+GV+F K L + G V +QIWD A
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDL---EVDGHFVTMQIWDTA 68
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ + +Y+ SD C++ F + + +SF+++ WK + + P ++L +
Sbjct: 69 GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 128
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
K D+ +RQV E +A C + E S+K+ + + V RI+ +
Sbjct: 129 KTDIKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILAT 179
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GD VGK+S + +V NKF +T+GV+F K L + G V +QIWD
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDL---EVDGHFVTMQIWD 66
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
++ KI+++GD VGK+S + +V NKF +T+GV+F K L
Sbjct: 10 SLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDL 53
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 106/183 (57%), Gaps = 16/183 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-----GRPVK--LQ 295
+L GDS VGKT+++ + NKF + TVG+DF K + + G G+ K LQ
Sbjct: 14 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQ 73
Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
+WD AG +R+ ++ +++++ G ++MFDLT+++SF +V W L + +N +
Sbjct: 74 LWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI--- 130
Query: 356 LLLASKCDLPDRQVEINEIEA--VCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
+L+ +K DLPD Q E+NE +A + +Y + + E S+ +E S+ L+D I+ KR
Sbjct: 131 VLIGNKADLPD-QREVNERQARELAEKYG-IPYFETSAATGQNVEKSVETLLDLIM--KR 186
Query: 414 MEE 416
ME+
Sbjct: 187 MEK 189
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG 157
D + ++K+L +GDS VGKT+++ + NKF + TVG+DF K + + G
Sbjct: 6 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 171 YLI--LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-----GRPVK 223
YLI L GDS VGKT+++ + NKF + TVG+DF K + + G G+ K
Sbjct: 10 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFK 69
Query: 224 --LQIWD 228
LQ+WD
Sbjct: 70 VHLQLWD 76
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 106/183 (57%), Gaps = 16/183 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-----GRPVK--LQ 295
+L GDS VGKT+++ + NKF + TVG+DF K + + G G+ K LQ
Sbjct: 14 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQ 73
Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
+WD AG +R+ ++ +++++ G ++MFDLT+++SF +V W L + +N +
Sbjct: 74 LWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI--- 130
Query: 356 LLLASKCDLPDRQVEINEIEA--VCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
+L+ +K DLPD Q E+NE +A + +Y + + E S+ +E S+ L+D I+ KR
Sbjct: 131 VLIGNKADLPD-QREVNERQARELAEKYG-IPYFETSAATGQNVEKSVETLLDLIM--KR 186
Query: 414 MEE 416
ME+
Sbjct: 187 MEK 189
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG 157
D + ++K+L +GDS VGKT+++ + NKF + TVG+DF K + + G
Sbjct: 7 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 171 YLI--LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-----GRPVK 223
YLI L GDS VGKT+++ + NKF + TVG+DF K + + G G+ K
Sbjct: 10 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFK 69
Query: 224 --LQIWD 228
LQ+WD
Sbjct: 70 VHLQLWD 76
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 92/172 (53%), Gaps = 3/172 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD VGK+S + +V NKF +T+GV+F K L + G V +QIWD A
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDL---EVDGHFVTMQIWDTA 64
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ + +Y+ SD C++ F + + +SF+++ WK + + P ++L +
Sbjct: 65 GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 124
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
K D+ +RQV E +A C + E S+K+ + + V R++ ++
Sbjct: 125 KIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD VGK+S + +V NKF +T+GV+F K L + G V +QIWD
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDL---EVDGHFVTMQIWD 62
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
++ K++++GD VGK+S + +V NKF +T+GV+F K L
Sbjct: 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDL 49
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 96/168 (57%), Gaps = 8/168 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I G VGKTS ++ F + F + K+TVGVDF K + + G+ ++LQIWD AGQ
Sbjct: 29 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELR---GKKIRLQIWDTAGQ 85
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ ++ YY+++ G I+++D+T +++F+ + +W +D D LL+ +K
Sbjct: 86 ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA----ELLLVGNKL 141
Query: 363 DLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
D DR++ + E Q M + E S+K++ +++ LVD I+
Sbjct: 142 DCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 159 PYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG 218
P G+ P +I+I G VGKTS ++ F + F + K+TVGVDF K + +
Sbjct: 16 PRGSPRPADFKLQVIII-GSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELR--- 71
Query: 219 GRPVKLQIWD 228
G+ ++LQIWD
Sbjct: 72 GKKIRLQIWD 81
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 7/58 (12%)
Query: 91 PRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
PR S PRP+D + L++++IG VGKTS ++ F + F + K+TVGVDF K
Sbjct: 16 PRGS-----PRPADFK--LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIK 66
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 91/171 (53%), Gaps = 3/171 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD VGK+S + +V NKF +T+GV+F K L + G V +QIWD A
Sbjct: 10 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDL---EVDGHFVTMQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ + +Y+ SD C++ F + + +SF+++ WK + + P ++L +
Sbjct: 67 GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 126
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
K D+ +RQV E +A C + E S+K+ + + V R++ +
Sbjct: 127 KIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 177
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD VGK+S + +V NKF +T+GV+F K L + G V +QIWD
Sbjct: 10 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDL---EVDGHFVTMQIWD 64
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
++ K++++GD VGK+S + +V NKF +T+GV+F K L
Sbjct: 8 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDL 51
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 86/151 (56%), Gaps = 3/151 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GD VGK+S + +V NKF +T+GV+F + L + GR V LQIWD AGQ
Sbjct: 10 VILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDL---EVDGRFVTLQIWDTAGQ 66
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++ F + +R+SFE++ W+ + + + P ++L +K
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKE 393
D DRQV E + C + ++E S+K+
Sbjct: 127 DKEDRQVTTEEAQTWCMENGDYPYLETSAKD 157
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ GD VGK+S + +V NKF +T+GV+F + L + GR V LQIWD
Sbjct: 10 VILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDL---EVDGRFVTLQIWD 62
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+LK++++GD VGK+S + +V NKF +T+GV+F + L
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDL 49
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 95/160 (59%), Gaps = 11/160 (6%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
SP++ + ++ G+ +VGKTS + F+ + F + Y+ T+G+DF +K + + R ++
Sbjct: 2 SPLR--KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED---RTIR 56
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
LQ+WD AGQ+R+ + Y ++S ++++D+TN SF+ +W D+ + + G+ +
Sbjct: 57 LQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT----ERGSDV 112
Query: 354 PCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
+L+ +K DL D RQV I E E + N M +IE S+K
Sbjct: 113 IIMLVGNKTDLADKRQVSIEEGERKAKELNVM-FIETSAK 151
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 65/128 (50%), Gaps = 15/128 (11%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
SP++ + ++ G+ +VGKTS + F+ + F + Y+ T+G+DF +K + + R ++
Sbjct: 2 SPLR--KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED---RTIR 56
Query: 224 LQIWDI-----YCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQ-NKFLDNYKNTVGVDF 277
LQ+WD + +L IP+Y V + V F Q K++D+ + G D
Sbjct: 57 LQLWDTAGQERFRSL----IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 112
Query: 278 STKLLSHK 285
L+ +K
Sbjct: 113 IIMLVGNK 120
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
K++ +G+ +VGKTS + F+ + F + Y+ T+G+DF +K +
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTM 48
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 108/187 (57%), Gaps = 12/187 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GDS VGK++ + F +N+F K+T+GV+F+T+ + + G+ +K QIWD A
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVDGKTIKAQIWDTA 62
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G ++++D+ ++E+V +W +L + + +L+ +
Sbjct: 63 GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA----DSNIVIMLVGN 118
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM-NFLVD--RIICSKRMEE 416
K DL R V +E A + N +S+IE S+ + +E++ N L + RI+ K++ +
Sbjct: 119 KSDLRHLRAVPTDEARAFAEKNN-LSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIAD 177
Query: 417 EAVERKS 423
A +S
Sbjct: 178 RAAHDES 184
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 31/41 (75%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+++IGDS VGK++ + F +N+F K+T+GV+F+T+
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR 45
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 84/143 (58%), Gaps = 8/143 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y ++ G+ VGKTS + F + F +NY++T+G+DF +K L + PV+LQ+WD A
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDE---GPVRLQLWDTA 58
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ + Y ++S I+++D+TNR+SFE+ +W D+ + + G + L+ +
Sbjct: 59 GQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDI----LNERGKDVIIALVGN 114
Query: 361 KCDLPD-RQVEINEIEAVCHQYN 382
K DL D R+V E +YN
Sbjct: 115 KTDLGDLRKVTYEEGXQKAQEYN 137
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
Y ++ G+ VGKTS + F + F +NY++T+G+DF +K L + PV+LQ+WD
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDE---GPVRLQLWD 56
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
K++ +G+ VGKTS + F + F +NY++T+G+DF +K L
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTL 43
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 103/183 (56%), Gaps = 16/183 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-----GRPVK--LQ 295
+L GDS VGKT+++ + NKF + TVG+DF K + + G G+ K LQ
Sbjct: 14 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQ 73
Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
+WD AG +R+ ++ +++++ G ++ FDLT+++SF +V W L + +N +
Sbjct: 74 LWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDI--- 130
Query: 356 LLLASKCDLPDRQVEINEIEA--VCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
+L+ +K DLPD Q E+NE +A + +Y + + E S+ +E S+ L+D I KR
Sbjct: 131 VLIGNKADLPD-QREVNERQARELAEKYG-IPYFETSAATGQNVEKSVETLLDLI--XKR 186
Query: 414 MEE 416
E+
Sbjct: 187 XEK 189
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG 157
D + ++K+L +GDS VGKT+++ + NKF + TVG+DF K + + G
Sbjct: 6 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 171 YLI--LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-----GRPVK 223
YLI L GDS VGKT+++ + NKF + TVG+DF K + + G G+ K
Sbjct: 10 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFK 69
Query: 224 --LQIWD 228
LQ+WD
Sbjct: 70 VHLQLWD 76
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 91/153 (59%), Gaps = 9/153 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ++ G+ +VGKTS + F+ + F + Y+ T+G+DF +K + + R V+LQ+WD A
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE---DRTVRLQLWDTA 58
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ + Y ++S ++++D+TN SF+ +W D+ + + G+ + +L+ +
Sbjct: 59 GQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRT----ERGSDVIIMLVGN 114
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
K DL D RQV I E E + N M +IE S+K
Sbjct: 115 KTDLADKRQVSIEEGERKAKELNVM-FIETSAK 146
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 21/125 (16%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI- 229
+ ++ G+ +VGKTS + F+ + F + Y+ T+G+DF +K + + R V+LQ+WD
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE---DRTVRLQLWDTA 58
Query: 230 ----YCTLSPIQIPTYPILITGDSTVGKTSY----VQGFVQ-NKFLDNYKNTVGVDFSTK 280
+ +L IP+Y DSTV Y V F Q K++D+ + G D
Sbjct: 59 GQERFRSL----IPSY----IRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIM 110
Query: 281 LLSHK 285
L+ +K
Sbjct: 111 LVGNK 115
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 17/119 (14%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK--LLSHKKYGGRPYGT---- 162
K++ +G+ +VGKTS + F+ + F + Y+ T+G+DF +K L + + + T
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 163 -FSPIQTPSYLILITGDSTVGKTSY----VQGFVQ-NKFLDNYKNTVGVDFSTKLLSHK 215
F + PSY+ DSTV Y V F Q K++D+ + G D L+ +K
Sbjct: 62 RFRSL-IPSYI----RDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 115
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 96/174 (55%), Gaps = 9/174 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGK+ + F + + ++Y +T+GVDF + + + G+ +KLQIWD A
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTA 73
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+++SF +V QW ++D + LL+ +
Sbjct: 74 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGN 129
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCDL ++V + ++E S+K +E S + I KRM
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI--KKRM 181
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 159 PYGTFSPIQTPSY----LILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 214
P G+ S + P Y +L+ GDS VGK+ + F + + ++Y +T+GVDF + +
Sbjct: 2 PLGSMSSMN-PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI-- 58
Query: 215 KKYGGRPVKLQIWD 228
+ G+ +KLQIWD
Sbjct: 59 -ELDGKTIKLQIWD 71
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS VGK+ + F + + ++Y +T+GVDF + +
Sbjct: 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI 58
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 103/183 (56%), Gaps = 16/183 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-----GRPVK--LQ 295
+L GDS VGKT+++ + NKF + TVG+DF K + + G G+ K LQ
Sbjct: 14 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQ 73
Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
+WD AG +R+ ++ +++++ G ++ FDLT+++SF +V W L + +N +
Sbjct: 74 LWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDI--- 130
Query: 356 LLLASKCDLPDRQVEINEIEA--VCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
+L+ +K DLPD Q E+NE +A + +Y + + E S+ +E S+ L+D I KR
Sbjct: 131 VLIGNKADLPD-QREVNERQARELAEKYG-IPYFETSAATGQNVEKSVETLLDLI--XKR 186
Query: 414 MEE 416
E+
Sbjct: 187 XEK 189
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG 157
D + ++K+L +GDS VGKT+++ + NKF + TVG+DF K + + G
Sbjct: 7 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 171 YLI--LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-----GRPVK 223
YLI L GDS VGKT+++ + NKF + TVG+DF K + + G G+ K
Sbjct: 10 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFK 69
Query: 224 --LQIWD 228
LQ+WD
Sbjct: 70 VHLQLWD 76
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 81/129 (62%), Gaps = 7/129 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGK+ + F + + ++Y +T+GVDF + + + G+ +KLQIWD A
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTA 63
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+++SF +V QW ++D + LL+ +
Sbjct: 64 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGN 119
Query: 361 KCDLPDRQV 369
KCDL ++V
Sbjct: 120 KCDLTTKKV 128
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGK+ + F + + ++Y +T+GVDF + + + G+ +KLQIWD
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWD 61
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 30/45 (66%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ + K+L+IGDS VGK+ + F + + ++Y +T+GVDF + +
Sbjct: 4 DALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI 48
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 80/134 (59%), Gaps = 2/134 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V +K+ YK T+G DF TK ++ G + +Q+WD AGQ
Sbjct: 11 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVD--GDKVATMQVWDTAGQ 68
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+TN SFE++ W+ + +++ P ++L +K
Sbjct: 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128
Query: 363 DLPDRQVEINEIEA 376
D + + ++E A
Sbjct: 129 DAEESKKIVSEKSA 142
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V +K+ YK T+G DF TK ++ G + +Q+WD
Sbjct: 11 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVD--GDKVATMQVWD 64
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V +K+ YK T+G DF TK
Sbjct: 3 SRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTK 48
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 104/170 (61%), Gaps = 10/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGK++ + F +++F K+T+GV+F+TK + K + +K QIWD A
Sbjct: 8 FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLK--NNKIIKAQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNG-AMLPCLLLA 359
GQ+RY ++ YY+ + G ++++D+T + SFE++ +W +L DN + + LL+
Sbjct: 66 GQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELR-----DNADSNIVILLVG 120
Query: 360 SKCDLPDRQVEINEIEAVCH-QYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+K DL +V IN+ +A + + +++IE S+ E +E + + L++ I
Sbjct: 121 NKSDLKHLRV-INDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEI 169
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGK++ + F +++F K+T+GV+F+TK + K + +K QIWD
Sbjct: 8 FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLK--NNKIIKAQIWD 63
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 33/46 (71%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 153
+ KI++IGDS VGK++ + F +++F K+T+GV+F+TK + K
Sbjct: 7 LFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLK 52
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 81/129 (62%), Gaps = 7/129 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGK+ + F + + ++Y +T+GVDF + + + G+ +KLQIWD A
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTA 63
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+++SF +V QW ++D + LL+ +
Sbjct: 64 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGN 119
Query: 361 KCDLPDRQV 369
KCDL ++V
Sbjct: 120 KCDLTTKKV 128
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGK+ + F + + ++Y +T+GVDF + + + G+ +KLQIWD
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWD 61
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS VGK+ + F + + ++Y +T+GVDF + +
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI 48
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 94/158 (59%), Gaps = 8/158 (5%)
Query: 235 PIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 294
P+ IL+ GDS VGK+ + FV++KF ++ T+G+DF K + G+ VKL
Sbjct: 2 PLGSSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD---INGKKVKL 58
Query: 295 QIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP 354
Q+WD AGQ+R+ ++ YY+ + G I+++D+T+ ++F ++ QW ++ ++ A L
Sbjct: 59 QLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA--NDEAQL- 115
Query: 355 CLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSK 392
LL+ +K D+ R V ++ EA+ + + +IE S+K
Sbjct: 116 -LLVGNKSDMETRVVTADQGEALAKELG-IPFIESSAK 151
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 165 PIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
P+ + IL+ GDS VGK+ + FV++KF ++ T+G+DF K + G+ VKL
Sbjct: 2 PLGSSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD---INGKKVKL 58
Query: 225 QIWD 228
Q+WD
Sbjct: 59 QLWD 62
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+++KIL+IGDS VGK+ + FV++KF ++ T+G+DF K
Sbjct: 6 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIK 47
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 96/174 (55%), Gaps = 9/174 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGK+ + F + + ++Y +T+GVDF + + + G+ +KLQIWD A
Sbjct: 26 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTA 82
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+++SF +V QW ++D + LL+ +
Sbjct: 83 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGN 138
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
KCDL ++V + ++E S+K +E S + I KRM
Sbjct: 139 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI--KKRM 190
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
SP + +L+ GDS VGK+ + F + + ++Y +T+GVDF + + + G+ +K
Sbjct: 19 SPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIK 75
Query: 224 LQIWD 228
LQIWD
Sbjct: 76 LQIWD 80
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 97 GFEPRPS-DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
G PR S + + + K+L+IGDS VGK+ + F + + ++Y +T+GVDF + +
Sbjct: 13 GLVPRGSPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI 67
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 81/129 (62%), Gaps = 7/129 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGK+ + F + + ++Y +T+GVDF + + + G+ +KLQIWD A
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTA 90
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+++SF +V QW ++D + LL+ +
Sbjct: 91 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGN 146
Query: 361 KCDLPDRQV 369
KCDL ++V
Sbjct: 147 KCDLTTKKV 155
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 155 YGGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 214
+ GRP + +P + +L+ GDS VGK+ + F + + ++Y +T+GVDF + +
Sbjct: 18 FQGRPXSSXNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI-- 75
Query: 215 KKYGGRPVKLQIWD 228
+ G+ +KLQIWD
Sbjct: 76 -ELDGKTIKLQIWD 88
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 98 FEPRPSDA-----ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
F+ RP + + + K+L+IGDS VGK+ + F + + ++Y +T+GVDF + +
Sbjct: 18 FQGRPXSSXNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI 75
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 97/171 (56%), Gaps = 9/171 (5%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
++ +++ G+ VGKTS V + +NKF D + T+G F TK L+ GG+ V L IWD
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLN---IGGKRVNLAIWDT 62
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ + +YY++S+G I+++D+T+ SF+ V W +L + +L N L ++
Sbjct: 63 AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL--RKMLGNEICL--CIVG 118
Query: 360 SKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+K DL +R V I E E+ + S+K++ IE+ L R+I
Sbjct: 119 NKIDLEKERHVSIQEAESYAESVGAKHY-HTSAKQNKGIEELFLDLCKRMI 168
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
S+ +++ G+ VGKTS V + +NKF D + T+G F TK L+ GG+ V L IWD
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLN---IGGKRVNLAIWDT 62
Query: 230 -----YCTLSPI 236
+ L PI
Sbjct: 63 AGQERFHALGPI 74
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
K++++G+ VGKTS V + +NKF D + T+G F TK L+
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLN 49
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 92/150 (61%), Gaps = 8/150 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ GDS VGK+ + FV++KF ++ T+G+DF K + G+ VKLQIWD AGQ
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD---INGKKVKLQIWDTAGQ 62
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ ++ YY+ + G I+++D+T+ ++F ++ QW ++ ++ A L LL+ +K
Sbjct: 63 ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA--NDEAQL--LLVGNKS 118
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSK 392
D+ R V ++ EA+ + + +IE S+K
Sbjct: 119 DMETRVVTADQGEALAKELG-IPFIESSAK 147
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
IL+ GDS VGK+ + FV++KF ++ T+G+DF K + G+ VKLQIWD
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD---INGKKVKLQIWD 58
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 32/43 (74%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
++++KIL+IGDS VGK+ + FV++KF ++ T+G+DF K
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIK 43
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 80/129 (62%), Gaps = 7/129 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGK + F + + ++Y +T+GVDF + + + G+ +KLQIWD A
Sbjct: 17 FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTA 73
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+++SF +V QW ++D + LL+ +
Sbjct: 74 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGN 129
Query: 361 KCDLPDRQV 369
KCDL ++V
Sbjct: 130 KCDLTTKKV 138
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 8/74 (10%)
Query: 159 PYGTFSPIQTPSY----LILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 214
P G+ S + P Y +L+ GDS VGK + F + + ++Y +T+GVDF + +
Sbjct: 2 PLGSMSSMN-PEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTI-- 58
Query: 215 KKYGGRPVKLQIWD 228
+ G+ +KLQIWD
Sbjct: 59 -ELDGKTIKLQIWD 71
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 91 PRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P S+ P + + + K+L+IGDS VGK + F + + ++Y +T+GVDF + +
Sbjct: 2 PLGSMSSMNP---EYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTI 58
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 80/128 (62%), Gaps = 7/128 (5%)
Query: 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
+L+ GDS VGK+ + F + + ++Y +T+GVDF + + + G+ +KLQIWD AG
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTAG 57
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
Q+R+ ++ YY+ + G I+++D+T+++SF +V QW ++D + LL+ +K
Sbjct: 58 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGNK 113
Query: 362 CDLPDRQV 369
CDL ++V
Sbjct: 114 CDLTTKKV 121
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+L+ GDS VGK+ + F + + ++Y +T+GVDF + + + G+ +KLQIWD
Sbjct: 2 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWD 54
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
K+L+IGDS VGK+ + F + + ++Y +T+GVDF + +
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI 41
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 91/150 (60%), Gaps = 8/150 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ GDS VGK+ + FV++KF ++ T+G+DF K + G+ VKLQIWD AGQ
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD---INGKKVKLQIWDTAGQ 62
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ ++ YY+ + G I+++D+T+ ++F ++ QW ++ ++ A L LL+ +K
Sbjct: 63 ERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHA--NDEAQL--LLVGNKS 118
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSK 392
D R V ++ EA+ + + +IE S+K
Sbjct: 119 DXETRVVTADQGEALAKELG-IPFIESSAK 147
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
IL+ GDS VGK+ + FV++KF ++ T+G+DF K + G+ VKLQIWD
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD---INGKKVKLQIWD 58
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+++ KIL+IGDS VGK+ + FV++KF ++ T+G+DF K
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIK 43
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 97/172 (56%), Gaps = 7/172 (4%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ T ILI G+S VGK+S + F + F T+GVDF K +S G KL IW
Sbjct: 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIS---VDGNKAKLAIW 69
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+R+ ++ YY+ + G I+++D+T R +F + W ++L++ C ++ + L
Sbjct: 70 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRND---IVNXL 126
Query: 358 LASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+ +K D +R+V+ NE +++ + +IE S+K ++ + LV++II
Sbjct: 127 VGNKIDKENREVDRNEGLKFARKHSXL-FIEASAKTCDGVQCAFEELVEKII 177
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
ILI G+S VGK+S + F + F T+GVDF K +S G KL IWD
Sbjct: 18 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIS---VDGNKAKLAIWDTAGQ 74
Query: 230 --YCTLSP 235
+ TL+P
Sbjct: 75 ERFRTLTP 82
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
D T LKIL+IG+S VGK+S + F + F T+GVDF K +S
Sbjct: 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIS 58
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 92/151 (60%), Gaps = 8/151 (5%)
Query: 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
IL+ GDS VGK+ + FV++KF ++ T+G+DF K + G+ VKLQ+WD AG
Sbjct: 22 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD---INGKKVKLQLWDTAG 78
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
Q+R+ ++ YY+ + G I+++D+T+ ++F ++ QW ++ ++ A L LL+ +K
Sbjct: 79 QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA--NDEAQL--LLVGNK 134
Query: 362 CDLPDRQVEINEIEAVCHQYNFMSWIEVSSK 392
D+ R V ++ EA+ + + +IE S+K
Sbjct: 135 SDMETRVVTADQGEALAKELG-IPFIESSAK 164
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
IL+ GDS VGK+ + FV++KF ++ T+G+DF K + G+ VKLQ+WD
Sbjct: 23 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD---INGKKVKLQLWD 75
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 32/43 (74%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
++++KIL+IGDS VGK+ + FV++KF ++ T+G+DF K
Sbjct: 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIK 60
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 90/153 (58%), Gaps = 9/153 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ++ G+ +VGKTS + F+ + F + Y+ T+G+DF +K + + R ++LQ+WD A
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED---RTIRLQLWDTA 70
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +R+ + Y ++S ++++D+TN SF+ +W D+ + + G+ + +L+ +
Sbjct: 71 GLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT----ERGSDVIIMLVGN 126
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
K DL D RQV I E E + N M +IE S+K
Sbjct: 127 KTDLADKRQVSIEEGERKAKELNVM-FIETSAK 158
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIY 230
+ ++ G+ +VGKTS + F+ + F + Y+ T+G+DF +K + + R ++LQ+WD
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED---RTIRLQLWDT- 69
Query: 231 CTLSPIQ--IPTYPILITGDSTVGKTSYVQGFVQ-NKFLDNYKNTVGVDFSTKLLSHK 285
L + IP+Y V + V F Q K++D+ + G D L+ +K
Sbjct: 70 AGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 127
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
K++ +G+ +VGKTS + F+ + F + Y+ T+G+DF +K +
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTM 55
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 80/129 (62%), Gaps = 7/129 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGK+ + F + + ++Y +T+GVDF + + + G+ +KLQIWD A
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+++SF +V QW ++D + LL+
Sbjct: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGI 121
Query: 361 KCDLPDRQV 369
KCDL ++V
Sbjct: 122 KCDLTTKKV 130
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGK+ + F + + ++Y +T+GVDF + + + G+ +KLQIWD
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWD 63
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS VGK+ + F + + ++Y +T+GVDF + +
Sbjct: 8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI 50
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 90/153 (58%), Gaps = 9/153 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ++ G+ +VGKTS + F+ + F + Y+ T+G+DF +K + + R V+LQ+WD A
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED---RTVRLQLWDTA 63
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +R+ + Y ++S ++++D+TN SF+ +W D+ + + G+ + +L+ +
Sbjct: 64 GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRT----ERGSDVIIMLVGN 119
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
K DL D RQV I E E + N M +IE S+K
Sbjct: 120 KTDLADKRQVSIEEGERKAKELNVM-FIETSAK 151
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 15/122 (12%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIY 230
+ ++ G+ +VGKTS + F+ + F + Y+ T+G+DF +K + + R V+LQ+WD
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE---DRTVRLQLWDT- 62
Query: 231 CTLSPIQ--IPTYPILITGDSTVGKTSY----VQGFVQ-NKFLDNYKNTVGVDFSTKLLS 283
L + IP+Y DSTV Y V F Q K++D+ + G D L+
Sbjct: 63 AGLERFRSLIPSY----IRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVG 118
Query: 284 HK 285
+K
Sbjct: 119 NK 120
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR-------PYG 161
K++ +G+ +VGKTS + F+ + F + Y+ T+G+DF +K + + R
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 162 TFSPIQTPSYLILITGDSTVGKTSY----VQGFVQ-NKFLDNYKNTVGVDFSTKLLSHK 215
F + PSY+ DSTV Y V F Q K++D+ + G D L+ +K
Sbjct: 67 RFRSL-IPSYI----RDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 120
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 93/162 (57%), Gaps = 9/162 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ L+ G + GK+ + F++NKF + +T+GV+F +++++ GG+ VKLQIWD A
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVN---VGGKTVKLQIWDTA 82
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++R YY+ + G ++++D+T+R+++ S+ W D + + +L +
Sbjct: 83 GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLA----SPNIVVILCGN 138
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL P+R+V E + M ++E S+ +E++
Sbjct: 139 KKDLDPEREVTFLEASRFAQENELM-FLETSALTGENVEEAF 179
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ L+ G + GK+ + F++NKF + +T+GV+F +++++ GG+ VKLQIWD
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVN---VGGKTVKLQIWD 80
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 97 GFEPRPSD-AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
G PR S ++ + K LVIG + GK+ + F++NKF + +T+GV+F +++++
Sbjct: 13 GLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVN 68
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 90/153 (58%), Gaps = 9/153 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ++ G+ +VGKTS + F+ + F + Y+ T+G+DF +K + + R V+LQ+WD A
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED---RTVRLQLWDTA 73
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +R+ + Y ++S ++++D+TN SF+ +W D+ + + G+ + +L+ +
Sbjct: 74 GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRT----ERGSDVIIMLVGN 129
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
K DL D RQV I E E + N M +IE S+K
Sbjct: 130 KTDLADKRQVSIEEGERKAKELNVM-FIETSAK 161
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 15/122 (12%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIY 230
+ ++ G+ +VGKTS + F+ + F + Y+ T+G+DF +K + + R V+LQ+WD
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED---RTVRLQLWDT- 72
Query: 231 CTLSPIQ--IPTYPILITGDSTVGKTSY----VQGFVQ-NKFLDNYKNTVGVDFSTKLLS 283
L + IP+Y DSTV Y V F Q K++D+ + G D L+
Sbjct: 73 AGLERFRSLIPSY----IRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVG 128
Query: 284 HK 285
+K
Sbjct: 129 NK 130
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK--LLSHKKYGGRPYGTFSPI 166
K++ +G+ +VGKTS + F+ + F + Y+ T+G+DF +K L + + + T
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 167 QTPSYLILITGDSTVGKTSY----VQGFVQ-NKFLDNYKNTVGVDFSTKLLSHK 215
+ S + DSTV Y V F Q K++D+ + G D L+ +K
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 130
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD A
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ++Y + YY + IIMFD+T+R ++++V W DL C +P +L +
Sbjct: 68 GQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
K D+ DR+V+ I V H+ + + ++S+K + E +L ++I +E
Sbjct: 123 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG 156
+ + K++++GD GKT++V+ + +F Y T+GV+ L+ H G
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG 57
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 89/153 (58%), Gaps = 9/153 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ++ G+ +VGKTS + F+ + F + Y+ T+G+DF +K + + R V+LQ+WD A
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED---RTVRLQLWDTA 71
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ + Y ++S ++++D+TN SF +W D+ + + G+ + +L+ +
Sbjct: 72 GQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRT----ERGSDVIIMLVGN 127
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
K DL D RQV E E + N M +IE S+K
Sbjct: 128 KTDLSDKRQVSTEEGERKAKELNVM-FIETSAK 159
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 21/125 (16%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI- 229
+ ++ G+ +VGKTS + F+ + F + Y+ T+G+DF +K + + R V+LQ+WD
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED---RTVRLQLWDTA 71
Query: 230 ----YCTLSPIQIPTYPILITGDSTVGKTSY----VQGFVQ-NKFLDNYKNTVGVDFSTK 280
+ +L IP+Y DSTV Y F Q +K++D+ + G D
Sbjct: 72 GQERFRSL----IPSY----IRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIM 123
Query: 281 LLSHK 285
L+ +K
Sbjct: 124 LVGNK 128
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
K++ +G+ +VGKTS + F+ + F + Y+ T+G+DF +K +
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTM 56
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 91/150 (60%), Gaps = 8/150 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ GDS VGK+ + FV++KF ++ T+G+DF K + G+ VKLQ+WD AGQ
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD---INGKKVKLQLWDTAGQ 62
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ ++ YY+ + G I+++D+T+ ++F ++ QW ++ ++ A L LL+ +K
Sbjct: 63 ERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHA--NDEAQL--LLVGNKS 118
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSK 392
D R V ++ EA+ + + +IE S+K
Sbjct: 119 DXETRVVTADQGEALAKELG-IPFIESSAK 147
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
IL+ GDS VGK+ + FV++KF ++ T+G+DF K + G+ VKLQ+WD
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD---INGKKVKLQLWD 58
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+++ KIL+IGDS VGK+ + FV++KF ++ T+G+DF K
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIK 43
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 91/153 (59%), Gaps = 9/153 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ++ G+ +VGKTS + F+ + F + Y+ T+G+DF +K + + R V+LQ+WD A
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED---RTVRLQLWDTA 59
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ + Y ++S ++++D+TN SF+ +W D+ + + G+ + +L+ +
Sbjct: 60 GQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRT----ERGSDVIIMLVGN 115
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
K DL D RQ+ I E E + + M +IE S+K
Sbjct: 116 KTDLADKRQITIEEGEQRAKELSVM-FIETSAK 147
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 21/125 (16%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI- 229
+ ++ G+ +VGKTS + F+ + F + Y+ T+G+DF +K + + R V+LQ+WD
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED---RTVRLQLWDTA 59
Query: 230 ----YCTLSPIQIPTYPILITGDSTVGKTSY----VQGFVQ-NKFLDNYKNTVGVDFSTK 280
+ +L IP+Y DSTV Y + F Q +K++D+ + G D
Sbjct: 60 GQERFRSL----IPSY----IRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIM 111
Query: 281 LLSHK 285
L+ +K
Sbjct: 112 LVGNK 116
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 17/119 (14%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK--LLSHKKYGGRPYGT---- 162
K++ +G+ +VGKTS + F+ + F + Y+ T+G+DF +K L + + + T
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 163 -FSPIQTPSYLILITGDSTVGKTSY----VQGFVQ-NKFLDNYKNTVGVDFSTKLLSHK 215
F + PSY+ DSTV Y + F Q +K++D+ + G D L+ +K
Sbjct: 63 RFRSL-IPSYI----RDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNK 116
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 95/181 (52%), Gaps = 14/181 (7%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-------GRPVKLQ 295
L GDS VGKTS + + KF + TVG+DF K + ++ G G+ + LQ
Sbjct: 14 FLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQ 73
Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
+WD AG +R+ ++ +++++ G +++FDLTN +SF +V W L +N ++ C
Sbjct: 74 LWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLC 133
Query: 356 LLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
+K DL D R V+ E + +Y + + E S+ I ++ L+D I+ KRM
Sbjct: 134 ---GNKSDLEDQRAVKEEEARELAEKYG-IPYFETSAANGTNISHAIEMLLDLIM--KRM 187
Query: 415 E 415
E
Sbjct: 188 E 188
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 171 YLI--LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-------GRP 221
YLI L GDS VGKTS + + KF + TVG+DF K + ++ G G+
Sbjct: 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQR 69
Query: 222 VKLQIWD 228
+ LQ+WD
Sbjct: 70 IHLQLWD 76
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG 156
D + ++K L +GDS VGKTS + + KF + TVG+DF K + ++ G
Sbjct: 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANG 59
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 93/155 (60%), Gaps = 15/155 (9%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ L+ G++ GK+ + F++ KF D+ +T+GV+F +K+++ GG+ VKLQIWD A
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIIN---VGGKYVKLQIWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHD---LDSKCILDNGAMLPCLL 357
GQ+R+ ++R YY+ + G ++++D+T+R+++ ++ W D L S+ I+ +L
Sbjct: 68 GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIV-------IIL 120
Query: 358 LASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSS 391
+K DL DR+V E Q N + ++E S+
Sbjct: 121 CGNKKDLDADREVTFLEASRFA-QENELMFLETSA 154
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ L+ G++ GK+ + F++ KF D+ +T+GV+F +K+++ GG+ VKLQIWD
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIIN---VGGKYVKLQIWD 65
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ K LVIG++ GK+ + F++ KF D+ +T+GV+F +K+++
Sbjct: 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIIN 53
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 97/169 (57%), Gaps = 9/169 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GDS VGK++ + F +N+F K+T+GV+F+T+ + + G+ +K QIWD A
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVDGKTIKAQIWDTA 86
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G ++++D+ ++E+V +W +L + + +L+ +
Sbjct: 87 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA----DSNIVIMLVGN 142
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
K DL R V +E A + N +S+IE S+ + +E + ++ I
Sbjct: 143 KSDLRHLRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQTILTEI 190
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 157 GRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 216
GR GT + +++ GDS VGK++ + F +N+F K+T+GV+F+T+ + +
Sbjct: 16 GRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---Q 72
Query: 217 YGGRPVKLQIWD 228
G+ +K QIWD
Sbjct: 73 VDGKTIKAQIWD 84
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 34/48 (70%)
Query: 101 RPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
R + + + K+++IGDS VGK++ + F +N+F K+T+GV+F+T+
Sbjct: 22 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR 69
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 93/155 (60%), Gaps = 15/155 (9%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ L+ G++ GK+ + F++ KF D+ +T+GV+F +K+++ GG+ VKLQIWD A
Sbjct: 12 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIIN---VGGKYVKLQIWDTA 68
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHD---LDSKCILDNGAMLPCLL 357
GQ+R+ ++R YY+ + G ++++D+T+R+++ ++ W D L S+ I+ +L
Sbjct: 69 GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIV-------IIL 121
Query: 358 LASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSS 391
+K DL DR+V E Q N + ++E S+
Sbjct: 122 CGNKKDLDADREVTFLEASRFA-QENELMFLETSA 155
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ L+ G++ GK+ + F++ KF D+ +T+GV+F +K+++ GG+ VKLQIWD
Sbjct: 12 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIIN---VGGKYVKLQIWD 66
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Query: 102 PSDAET---VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P +ET + K LVIG++ GK+ + F++ KF D+ +T+GV+F +K+++
Sbjct: 2 PLGSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIIN 54
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 97/169 (57%), Gaps = 9/169 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GDS VGK++ + F +N+F K+T+GV+F+T+ + + G+ +K QIWD A
Sbjct: 21 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVDGKTIKAQIWDTA 77
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G ++++D+ ++E+V +W +L + + +L+ +
Sbjct: 78 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA----DSNIVIMLVGN 133
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
K DL R V +E A + N +S+IE S+ + +E + ++ I
Sbjct: 134 KSDLRHLRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQTILTEI 181
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 161 GTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG 218
G+ P + YL +++ GDS VGK++ + F +N+F K+T+GV+F+T+ + +
Sbjct: 9 GSLVPRGSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVD 65
Query: 219 GRPVKLQIWD 228
G+ +K QIWD
Sbjct: 66 GKTIKAQIWD 75
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
PR S + + K+++IGDS VGK++ + F +N+F K+T+GV+F+T+
Sbjct: 13 PRGS-YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR 60
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 98/179 (54%), Gaps = 9/179 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGK+ + F + + ++Y +T+GVDF + + + G+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+++S+ +V QW ++D + LL+ +
Sbjct: 67 GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYA----SENVNKLLVGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K DL ++V N + ++E S+K +E + + I KRM E +
Sbjct: 123 KSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI--KKRMGLEVL 179
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGK+ + F + + ++Y +T+GVDF + + + G+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWD 64
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS VGK+ + F + + ++Y +T+GVDF + +
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI 51
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 96/174 (55%), Gaps = 9/174 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGK+ + F + + ++Y +T+GVDF + + + G+ +KLQIWD A
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G I+++D+T+++S+ +V QW ++D + LL+ +
Sbjct: 67 GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYA----SENVNKLLVGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
K DL ++V N + ++E S+K +E + + I KRM
Sbjct: 123 KSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI--KKRM 174
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGK+ + F + + ++Y +T+GVDF + + + G+ +KLQIWD
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWD 64
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS VGK+ + F + + ++Y +T+GVDF + +
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI 51
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD A
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWDTA 72
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+++ + YY + IIMFD+T+R ++++V W DL C +P +L +
Sbjct: 73 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 127
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
K D+ DR+V+ I V H+ + + ++S+K + E +L ++I +E
Sbjct: 128 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 180
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWD 70
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG 156
+ + K++++GD GKT++V+ + +F Y T+GV+ L+ H G
Sbjct: 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG 62
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 96/171 (56%), Gaps = 9/171 (5%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
++ +++ G+ VGKTS V + +NKF D + T+ F TK L+ GG+ V L IWD
Sbjct: 20 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLN---IGGKRVNLAIWDT 76
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ + +YY++S+G I+++D+T+ SF+ V W +L + +L N L ++
Sbjct: 77 AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL--RKMLGNEICL--CIVG 132
Query: 360 SKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+K DL +R V I E E+ + S+K++ IE+ L R+I
Sbjct: 133 NKIDLEKERHVSIQEAESYAESVGAKHY-HTSAKQNKGIEELFLDLCKRMI 182
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
S+ +++ G+ VGKTS V + +NKF D + T+ F TK L+ GG+ V L IWD
Sbjct: 20 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLN---IGGKRVNLAIWDT 76
Query: 230 -----YCTLSPI 236
+ L PI
Sbjct: 77 AGQERFHALGPI 88
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
PR S A + K++++G+ VGKTS V + +NKF D + T+ F TK L+
Sbjct: 13 PRGSRAYS-FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLN 63
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD A
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+++ + YY + IIMFD+T+R ++++V W DL C +P +L +
Sbjct: 68 GQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
K D+ DR+V+ I V H+ + + ++S+K + E +L ++I +E
Sbjct: 123 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWD 65
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG 156
+ + K++++GD GKT++V+ + +F Y T+GV+ L+ H G
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG 57
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD A
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+++ + YY + IIMFD+T+R ++++V W DL C +P +L +
Sbjct: 68 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
K D+ DR+V+ I V H+ + + ++S+K + E +L ++I +E
Sbjct: 123 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWD 65
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG 156
+ + K++++GD GKT++V+ + +F Y T+GV+ L+ H G
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG 57
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD A
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWDTA 60
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+++ + YY + IIMFD+T+R ++++V W DL C +P +L +
Sbjct: 61 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 115
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
K D+ DR+V+ I V H+ + + ++S+K + E +L ++I +E
Sbjct: 116 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 168
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD
Sbjct: 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWD 58
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD 144
K++++GD GKT++V+ + +F Y T+GV+
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 39
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD A
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHP-LVFHTNRG--PIKFNVWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+++ + YY + IIMFD+T+R ++++V W DL C +P +L +
Sbjct: 68 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
K D+ DR+V+ I V H+ + + ++S+K + E +L ++I +E
Sbjct: 123 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHP-LVFHTNRG--PIKFNVWD 65
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG 156
+ + K++++GD GKT++V+ + +F Y T+GV+ L+ H G
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHP-LVFHTNRG 57
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 96/171 (56%), Gaps = 9/171 (5%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
++ +++ G+ VGKTS V + +NKF D + T+ F TK L+ GG+ V L IWD
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLN---IGGKRVNLAIWDT 62
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ + +YY++S+G I+++D+T+ SF+ V W +L + +L N L ++
Sbjct: 63 AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL--RKMLGNEICL--CIVG 118
Query: 360 SKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+K DL +R V I E E+ + S+K++ IE+ L R+I
Sbjct: 119 NKIDLEKERHVSIQEAESYAESVGAKHY-HTSAKQNKGIEELFLDLCKRMI 168
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
S+ +++ G+ VGKTS V + +NKF D + T+ F TK L+ GG+ V L IWD
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLN---IGGKRVNLAIWDT 62
Query: 230 -----YCTLSPI 236
+ L PI
Sbjct: 63 AGQERFHALGPI 74
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
K++++G+ VGKTS V + +NKF D + T+ F TK L+
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLN 49
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD A
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+++ + YY + IIMFD+T+R ++++V W DL C +P +L +
Sbjct: 68 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
K D+ DR+V+ I V H+ + + ++S+K + E +L ++I +E
Sbjct: 123 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWD 65
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG 156
+ + K++++GD GKT++V+ + +F Y T+GV+ L+ H G
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG 57
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD A
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+++ + YY + IIMFD+T+R ++++V W DL C +P +L +
Sbjct: 68 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
K D+ DR+V+ I V H+ + + ++S+K + E +L ++I +E
Sbjct: 123 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWD 65
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD 144
+ + K++++GD GKT++V+ + +F Y T+GV+
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 46
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 94/162 (58%), Gaps = 9/162 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +I GD VGK+ + F + KF+ + +T+GV+F T+++ + G+ +KLQIWD A
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII---EVSGQKIKLQIWDTA 72
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++R YY+ + G ++++D+T R ++ + W D++ + + ++ +L+ +
Sbjct: 73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWL--TDARNLTNPNTVI--ILIGN 128
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL R V E + + N + ++E S+K +ED+
Sbjct: 129 KADLEAQRDVTYEEAKQFAEE-NGLLFLEASAKTGENVEDAF 169
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 159 PYGTFSPIQTPSYLI--LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 216
P G+ + SY+ +I GD VGK+ + F + KF+ + +T+GV+F T+++ +
Sbjct: 2 PLGSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII---E 58
Query: 217 YGGRPVKLQIWD 228
G+ +KLQIWD
Sbjct: 59 VSGQKIKLQIWD 70
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%)
Query: 96 IGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+G P + + K ++IGD VGK+ + F + KF+ + +T+GV+F T+++
Sbjct: 3 LGSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII 57
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD A
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHP-LVFHTNRG--PIKFNVWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+++ + YY + IIMFD+T+R ++++V W DL C +P +L +
Sbjct: 68 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
K D+ DR+V+ I V H+ + + ++S+K + E +L ++I +E
Sbjct: 123 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHP-LVFHTNRG--PIKFNVWD 65
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD 144
+ + K++++GD GKT++V+ + +F Y T+GV+
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVE 46
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 77/123 (62%), Gaps = 7/123 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ GDS VGK+ + F + + ++Y +T+GVDF + + + G+ +KLQIWD AGQ
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTAGQ 57
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ ++ YY+ + G I+++D+T+++SF +V QW ++D + LL+ +KC
Sbjct: 58 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGNKC 113
Query: 363 DLP 365
DL
Sbjct: 114 DLT 116
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+L+ GDS VGK+ + F + + ++Y +T+GVDF + + + G+ +KLQIWD
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWD 53
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 111 ILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+L+IGDS VGK+ + F + + ++Y +T+GVDF + +
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI 40
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 78/129 (60%), Gaps = 11/129 (8%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
Y I++ GD+ VGK+S++ +N+F +N T+GVDF K L G LQ+WD
Sbjct: 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLI---VDGERTVLQLWDT 84
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA--MLPCLL 357
AGQ+R+ +++ Y++ +DG ++++D+T KSF ++ +W ++++ A +P +L
Sbjct: 85 AGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVD------MIEDAAHETVPIML 138
Query: 358 LASKCDLPD 366
+ +K D+ D
Sbjct: 139 VGNKADIRD 147
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 159 PYGTFSPIQT-PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 217
P G+ + +Y I++ GD+ VGK+S++ +N+F +N T+GVDF K L
Sbjct: 16 PRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLI---V 72
Query: 218 GGRPVKLQIWD 228
G LQ+WD
Sbjct: 73 DGERTVLQLWD 83
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 97 GFEPRPS----DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
G PR S ++ KI++ GD+ VGK+S++ +N+F +N T+GVDF K L
Sbjct: 13 GLVPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTL 70
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 91/167 (54%), Gaps = 10/167 (5%)
Query: 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
+++ G+ VGK+S +Q + + F +YK T+GVDF L + V+L +WD AG
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDF---LERQIQVNDEDVRLMLWDTAG 63
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
Q+ + +++ YY+ + C+++F T+R+SFE++ W+ K + + G +P L+ +K
Sbjct: 64 QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWRE----KVVAEVGD-IPTALVQNK 118
Query: 362 CDLPDRQ-VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
DL D ++ E E + + + + S KE L + + +L ++
Sbjct: 119 IDLLDDSCIKNEEAEGLAKRLK-LRFYRTSVKEDLNVSEVFKYLAEK 164
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
+E +K++V+G+ VGK+S +Q + + F +YK T+GVDF
Sbjct: 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDF 42
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ G+ VGK+S +Q + + F +YK T+GVDF L + V+L +WD
Sbjct: 8 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDF---LERQIQVNDEDVRLMLWD 60
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD A
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+++ + YY + II FD+T+R ++++V W DL C +P +L +
Sbjct: 68 GQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
K D+ DR+V+ I V H+ + + ++S+K + E +L ++I +E
Sbjct: 123 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWD 65
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG 156
+ + K++++GD GKT++V+ + +F Y T+GV+ L+ H G
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG 57
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 92/155 (59%), Gaps = 15/155 (9%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ L+ G++ GK+ + F++ KF D+ +T+GV+F +K+++ GG+ VKLQIWD A
Sbjct: 9 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIIN---VGGKYVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHD---LDSKCILDNGAMLPCLL 357
G +R+ ++R YY+ + G ++++D+T+R+++ ++ W D L S+ I+ +L
Sbjct: 66 GLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIV-------IIL 118
Query: 358 LASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSS 391
+K DL DR+V E Q N + ++E S+
Sbjct: 119 CGNKKDLDADREVTFLEASRFA-QENELMFLETSA 152
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ L+ G++ GK+ + F++ KF D+ +T+GV+F +K+++ GG+ VKLQIWD
Sbjct: 9 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIIN---VGGKYVKLQIWD 63
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ K LVIG++ GK+ + F++ KF D+ +T+GV+F +K+++
Sbjct: 8 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIIN 51
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 96/169 (56%), Gaps = 9/169 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GDS VGK++ + F +N+F K+T+GV+F+T+ + + G+ +K QIWD A
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVDGKTIKAQIWDTA 86
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +RY ++ YY+ + G ++++D+ ++E+V +W +L + + +L+ +
Sbjct: 87 GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA----DSNIVIMLVGN 142
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
K DL R V +E A + N +S+IE S+ + +E + ++ I
Sbjct: 143 KSDLRHLRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQTILTEI 190
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 157 GRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 216
GR GT + +++ GDS VGK++ + F +N+F K+T+GV+F+T+ + +
Sbjct: 16 GRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---Q 72
Query: 217 YGGRPVKLQIWD 228
G+ +K QIWD
Sbjct: 73 VDGKTIKAQIWD 84
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 34/48 (70%)
Query: 101 RPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
R + + + K+++IGDS VGK++ + F +N+F K+T+GV+F+T+
Sbjct: 22 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR 69
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 93/162 (57%), Gaps = 9/162 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +I GD VGK+ + F + KF+ + +T+GV+F T+++ + G+ +KLQIWD A
Sbjct: 31 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII---EVSGQKIKLQIWDTA 87
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ R+ ++R YY+ + G ++++D+T R ++ + W D++ + + ++ +L+ +
Sbjct: 88 GQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWL--TDARNLTNPNTVI--ILIGN 143
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL R V E + + N + ++E S+K +ED+
Sbjct: 144 KADLEAQRDVTYEEAKQFAEE-NGLLFLEASAKTGENVEDAF 184
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+I GD VGK+ + F + KF+ + +T+GV+F T+++ + G+ +KLQIWD
Sbjct: 34 IIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII---EVSGQKIKLQIWD 85
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 91 PRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
PR S+ P + + K ++IGD VGK+ + F + KF+ + +T+GV+F T+++
Sbjct: 16 PRGSM---ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII 72
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 96/169 (56%), Gaps = 9/169 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GDS VGK++ + F +N+F K+T+GV+F+T+ + + G+ +K QIWD A
Sbjct: 9 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVDGKTIKAQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +RY ++ YY+ + G ++++D+ ++E+V +W +L + + +L+ +
Sbjct: 66 GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA----DSNIVIMLVGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
K DL R V +E A + N +S+IE S+ + +E + ++ I
Sbjct: 122 KSDLRHLRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQTILTEI 169
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDS VGK++ + F +N+F K+T+GV+F+T+ + + G+ +K QIWD
Sbjct: 9 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVDGKTIKAQIWD 63
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 31/41 (75%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+++IGDS VGK++ + F +N+F K+T+GV+F+T+
Sbjct: 8 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR 48
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 7/168 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGK++ + F +N+F + K+T+GV+F+T+ L + G+ +K QIWD A
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIE---GKRIKAQIWDTA 70
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G +I++D++ S+E+ W +L DN A+ L+ +
Sbjct: 71 GQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD-DNVAV---GLIGN 126
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
K DL + E Q N + + E S+ ++ + L++ I
Sbjct: 127 KSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTI 174
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 40/58 (68%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGK++ + F +N+F + K+T+GV+F+T+ L + G+ +K QIWD
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIE---GKRIKAQIWD 68
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 35/47 (74%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
D + + KI++IGDS VGK++ + F +N+F + K+T+GV+F+T+ L
Sbjct: 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTL 55
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD A
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +++ + YY + IIMFD+T+R ++++V W DL C +P +L +
Sbjct: 68 GLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
K D+ DR+V+ I V H+ + + ++S+K + E +L ++I +E
Sbjct: 123 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWD 65
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG 156
+ + K++++GD GKT++V+ + +F Y T+GV+ L+ H G
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG 57
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 10/179 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD A
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWDTA 69
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +++ + YY + IIMFD+T+R ++++V W DL C +P +L +
Sbjct: 70 GLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 124
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D+ DR+V+ I V H+ + + ++S+K + E +L ++I +E A+
Sbjct: 125 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAM 181
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD
Sbjct: 12 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWD 67
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD 144
+ + K++++GD GKT++V+ + +F Y T+GV+
Sbjct: 7 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 48
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD GKT++V+ + + Y T+GV+ L+ H G P+K +WD A
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWDTA 72
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+++ + YY + IIMFD+T+R ++++V W DL C +P +L +
Sbjct: 73 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 127
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
K D+ DR+V+ I V H+ + + ++S+K + E +L ++I +E
Sbjct: 128 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 180
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD GKT++V+ + + Y T+GV+ L+ H G P+K +WD
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWD 70
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 10/179 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD A
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWDTA 63
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +++ + YY + IIMFD+T+R ++++V W DL C +P +L +
Sbjct: 64 GLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 118
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D+ DR+V+ I V H+ + + ++S+K + E +L ++I +E A+
Sbjct: 119 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAM 175
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD GKT++V+ + +F Y T+GV+ L+ H G P+K +WD
Sbjct: 6 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWD 61
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD 144
+ + K++++GD GKT++V+ + +F Y T+GV+
Sbjct: 1 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 42
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 91/171 (53%), Gaps = 9/171 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ G+S VGKT+ + F +N+F + + T+GV+FST+ + G VK QIWD A
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTV---MLGTAAVKAQIWDTA 82
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +RY ++ YY+ + G +++FDLT +++ V +W +L A + +L+ +
Sbjct: 83 GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA----EATIVVMLVGN 138
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
K DL R+V E N + ++E S+ + +E + ++ I
Sbjct: 139 KSDLSQAREVPTEEARMFAEN-NGLLFLETSALDSTNVELAFETVLKEIFA 188
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 97 GFEPRPS-DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
G PR S D V K+++IG+S VGKT+ + F +N+F + + T+GV+FST+
Sbjct: 13 GLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTR 65
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ G+S VGKT+ + F +N+F + + T+GV+FST+ + G VK QIWD
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTV---MLGTAAVKAQIWD 80
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 96/179 (53%), Gaps = 10/179 (5%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
++PT+ +++ GD GKT++V+ + +F Y T+GV+ L + +G +K +
Sbjct: 9 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHP-LSFYTNFG--EIKFDV 65
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
WD AG +++ + YY N+ IIMFD+T+R ++++V W DL C +P +
Sbjct: 66 WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIV 120
Query: 357 LLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
L +K D+ +R+V+ I H+ + + ++S+K + E +L ++ + ++E
Sbjct: 121 LCGNKVDVKERKVKAKTI--TFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLE 177
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
+ P++ +++ GD GKT++V+ + +F Y T+GV+ L + +G +K +
Sbjct: 9 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHP-LSFYTNFG--EIKFDV 65
Query: 227 WD 228
WD
Sbjct: 66 WD 67
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD 144
K++++GD GKT++V+ + +F Y T+GV+
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVE 48
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 91/171 (53%), Gaps = 9/171 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ G+S VGKT+ + F +N+F + + T+GV+FST+ + G VK QIWD A
Sbjct: 11 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTV---MLGTAAVKAQIWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +RY ++ YY+ + G +++FDLT +++ V +W +L A + +L+ +
Sbjct: 68 GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA----EATIVVMLVGN 123
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
K DL R+V E N + ++E S+ + +E + ++ I
Sbjct: 124 KSDLSQAREVPTEEARMFAEN-NGLLFLETSALDSTNVELAFETVLKEIFA 173
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ G+S VGKT+ + F +N+F + + T+GV+FST+ + G VK QIWD
Sbjct: 11 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTV---MLGTAAVKAQIWD 65
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
D V K+++IG+S VGKT+ + F +N+F + + T+GV+FST+
Sbjct: 6 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTR 50
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 90/162 (55%), Gaps = 9/162 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +I GD+ VGK+ + F +F + T+GV+F ++++ G+ +KLQIWD A
Sbjct: 11 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIT---IDGKQIKLQIWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+ + ++R YY+ + G ++++D+T R +F + W D N M+ +L+ +
Sbjct: 68 GQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHS---NSNMV-IMLIGN 123
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL R+V+ E EA ++ + ++E S+K +E++
Sbjct: 124 KSDLESRREVKKEEGEAFAREHGLI-FMETSAKTASNVEEAF 164
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+I GD+ VGK+ + F +F + T+GV+F ++++ G+ +KLQIWD
Sbjct: 14 IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIT---IDGKQIKLQIWD 65
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P S + K ++IGD+ VGK+ + F +F + T+GV+F ++++
Sbjct: 2 PLGSAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIT 53
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 95/169 (56%), Gaps = 9/169 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GDS VGK++ + F +N+F K+T+GV+F+T+ + + G+ +K QIWD A
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVDGKTIKAQIWDTA 62
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +RY ++ YY+ + G ++++D+ ++E+V +W +L + + L+ +
Sbjct: 63 GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA----DSNIVIXLVGN 118
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
K DL R V +E A + N +S+IE S+ + +E + ++ I
Sbjct: 119 KSDLRHLRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQTILTEI 166
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDS VGK++ + F +N+F K+T+GV+F+T+ + + G+ +K QIWD
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVDGKTIKAQIWD 60
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 31/41 (75%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+++IGDS VGK++ + F +N+F K+T+GV+F+T+
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR 45
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 91/161 (56%), Gaps = 10/161 (6%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
+ +++ GDS VGKT + F FL + +TVG+DF K+L G VKLQ+WD
Sbjct: 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLD---VDGVKVKLQMWD 66
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
AGQ+R+ ++ YY+++ ++++D+TN+ SF+++ W ++ D + +LL
Sbjct: 67 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD----VALMLL 122
Query: 359 ASKCD-LPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398
+K D +R V+ + E + +Y + ++E S+K L ++
Sbjct: 123 GNKVDSAHERVVKREDGEKLAKEYG-LPFMETSAKTGLNVD 162
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++ +++ GDS VGKT + F FL + +TVG+DF K+L G VKLQ+WD
Sbjct: 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLD---VDGVKVKLQMWD 66
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLL 150
+ K++++GDS VGKT + F FL + +TVG+DF K+L
Sbjct: 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVL 53
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 95/169 (56%), Gaps = 9/169 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GDS VGK++ + F +N+F K+T+GV+F+T+ + + G+ +K QIWD A
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVDGKTIKAQIWDTA 68
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +RY ++ YY+ + G ++++D+ ++E+V +W +L + + L+ +
Sbjct: 69 GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA----DSNIVIXLVGN 124
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
K DL R V +E A + N +S+IE S+ + +E + ++ I
Sbjct: 125 KSDLRHLRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQTILTEI 172
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDS VGK++ + F +N+F K+T+GV+F+T+ + + G+ +K QIWD
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVDGKTIKAQIWD 66
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 34/49 (69%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
R + + + K+++IGDS VGK++ + F +N+F K+T+GV+F+T+
Sbjct: 3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR 51
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 91/162 (56%), Gaps = 9/162 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +I GD+ VGK+ + F +F + T+GV+F ++++ G+ +KLQIWD A
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVN---IDGKQIKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+ + ++R YY+ + G ++++D+T R++F + W D + + + +L+ +
Sbjct: 79 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH----SSSNMVIMLIGN 134
Query: 361 KCDLPDRQ-VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL R+ V+ E EA ++ + ++E S+K +E++
Sbjct: 135 KSDLESRRDVKREEGEAFAREHGLI-FMETSAKTACNVEEAF 175
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 170 SYLI--LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 227
SYL +I GD+ VGK+ + F +F + T+GV+F ++++ G+ +KLQIW
Sbjct: 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVN---IDGKQIKLQIW 75
Query: 228 D 228
D
Sbjct: 76 D 76
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 97 GFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
G PR S + K ++IGD+ VGK+ + F +F + T+GV+F ++++
Sbjct: 13 GLVPRGS---YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVN 64
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 7/150 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GD GK+S V FV+++F++ ++T+G F ++ L+ VK +IWD AGQ
Sbjct: 15 LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLA---VNDATVKFEIWDTAGQ 71
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+RY ++ +YY+ + II+FD+TN+ SFE +W +L ++ N M+ L +K
Sbjct: 72 ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG---NPNMVMA-LAGNKS 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSK 392
DL D + E Q N + ++E S+K
Sbjct: 128 DLLDARKVTAEDAQTYAQENGLFFMETSAK 157
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
+++ GD GK+S V FV+++F++ ++T+G F ++ L+ VK +IWD
Sbjct: 15 LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLA---VNDATVKFEIWDTAGQ 71
Query: 230 --YCTLSPI 236
Y +L+P+
Sbjct: 72 ERYHSLAPM 80
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 30/42 (71%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
K++++GD GK+S V FV+++F++ ++T+G F ++ L+
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLA 55
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 96/179 (53%), Gaps = 10/179 (5%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
++PT+ +++ GD GKT++V+ + +F Y T+GV+ L + +G +K +
Sbjct: 2 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHP-LSFYTNFG--EIKFDV 58
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
WD AG +++ + YY N+ IIMFD+T+R ++++V W DL C +P +
Sbjct: 59 WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIV 113
Query: 357 LLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
L +K D+ +R+V+ I H+ + + ++S+K + E +L ++ + ++E
Sbjct: 114 LCGNKVDVKERKVKAKTI--TFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLE 170
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
+ P++ +++ GD GKT++V+ + +F Y T+GV+ L + +G +K +
Sbjct: 2 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHP-LSFYTNFG--EIKFDV 58
Query: 227 WD 228
WD
Sbjct: 59 WD 60
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD 144
K++++GD GKT++V+ + +F Y T+GV+
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVE 41
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 96/179 (53%), Gaps = 10/179 (5%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
++PT+ +++ GD GKT++V+ + +F Y T+GV+ L + +G +K +
Sbjct: 1 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHP-LSFYTNFG--EIKFDV 57
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
WD AG +++ + YY N+ IIMFD+T+R ++++V W DL C +P +
Sbjct: 58 WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIV 112
Query: 357 LLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
L +K D+ +R+V+ I H+ + + ++S+K + E +L ++ + ++E
Sbjct: 113 LCGNKVDVKERKVKAKTI--TFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLE 169
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
+ P++ +++ GD GKT++V+ + +F Y T+GV+ L + +G +K +
Sbjct: 1 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHP-LSFYTNFG--EIKFDV 57
Query: 227 WD 228
WD
Sbjct: 58 WD 59
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD 144
K++++GD GKT++V+ + +F Y T+GV+
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVE 40
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 91/173 (52%), Gaps = 7/173 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ G++ VGKT V+ F Q F T+GVDF K + + G VKLQIWD A
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTV---EINGEKVKLQIWDTA 83
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++ I+ +D+T +SF + +W +++ + +L+ +
Sbjct: 84 GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA----SNKVITVLVGN 139
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K DL +R+ + + M ++E S+KE +E L R+I R
Sbjct: 140 KIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 192
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ G++ VGKT V+ F Q F T+GVDF K + + G VKLQIWD
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTV---EINGEKVKLQIWD 81
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 97 GFEPRPS--DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
G PR S D + + KI++IG++ VGKT V+ F Q F T+GVDF K
Sbjct: 13 GLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIK 66
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 7/133 (5%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
L P + + I++ GDS VGKT F +F D + T+GVDF + + G +
Sbjct: 22 LPPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVD---IDGERI 78
Query: 293 KLQIWDIAGQDRYI-CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA 351
K+Q+WD AGQ+R+ M + YY+N + ++D TN SF S+ W + + ++
Sbjct: 79 KIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLAND-- 136
Query: 352 MLPCLLLASKCDL 364
+P +L+ +KCDL
Sbjct: 137 -IPRILVGNKCDL 148
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P + KI+VIGDS VGKT F +F D + T+GVDF + +
Sbjct: 23 PPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAV 71
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 7/125 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT F +F D + T+GVDF + + G +K+Q+WD A
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVD---IDGERIKIQLWDTA 77
Query: 301 GQDRYI-CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
GQ+R+ M + YY+N + ++D+TN SF S+ W + + ++ +P +L+
Sbjct: 78 GQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND---IPRILVG 134
Query: 360 SKCDL 364
+KCDL
Sbjct: 135 NKCDL 139
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
PR S + + KI+VIGDS VGKT F +F D + T+GVDF +
Sbjct: 13 PRGSRSR-IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRER 60
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 93/170 (54%), Gaps = 15/170 (8%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
S +I + +++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK
Sbjct: 2 SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVC---LDDTTVK 58
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
+IWD AGQ+RY ++ +YY+ + I+++D+TN+++F W +L +
Sbjct: 59 FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQAS------- 111
Query: 354 PCLLLA---SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
P +++A +K DL + R VE E +A N + ++E S+K + + D
Sbjct: 112 PSIVIALAGNKADLANKRMVEYEEAQAYADD-NSLLFMETSAKTAMNVND 160
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI- 229
+ +++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +IWD
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVC---LDDTTVKFEIWDTA 65
Query: 230 ----YCTLSPI 236
Y +L+P+
Sbjct: 66 GQERYHSLAPM 76
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
K++++G+S VGK+S V FV+ +F + ++T+G F T+
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ 48
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ Y +++ G VGK++ +QN F+D Y T+ + +++ G L I
Sbjct: 1 MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDIL 56
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+ Y M Y + +G + +F + N KSFE + Q++ + K + D+ +P +L
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVL 113
Query: 358 LASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ +KCDL R VE + + + Y + +IE S+K +ED+ LV I
Sbjct: 114 VGNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
T K++V+G VGK++ +QN F+D Y T+
Sbjct: 2 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI 36
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTV 203
Y +++ G VGK++ +QN F+D Y T+
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI 36
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 73/130 (56%), Gaps = 8/130 (6%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG-VDFSTKLLSHKKYGGRPVKLQIWD 298
TY I + GD VGKT+Y+ + +F NY TVG V+ L + G +K +WD
Sbjct: 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQ---GNVIKFNVWD 67
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
AGQ++ + VYY + G I+ FD+T+R + +++ +W + + ++ N A P ++
Sbjct: 68 TAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEF--QAVVGNEA--PIVVC 123
Query: 359 ASKCDLPDRQ 368
A+K D+ +RQ
Sbjct: 124 ANKIDIKNRQ 133
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG-VDFSTKLLSHKKYGGRPVKLQIWD 228
+Y I + GD VGKT+Y+ + +F NY TVG V+ L + G +K +WD
Sbjct: 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQ---GNVIKFNVWD 67
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142
E KI +IGD VGKT+Y+ + +F NY TVG
Sbjct: 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVG 45
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ Y +++ G VGK++ +QN F+D Y T+ + +++ G L I
Sbjct: 1 MTEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDIL 56
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+ Y M Y + +G + +F + N KSFE + Q++ + K + D+ +P +L
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVL 113
Query: 358 LASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ +KCDL R VE + + + Y + +IE S+K +ED+ LV I
Sbjct: 114 VGNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
T K++V+G VGK++ +QN F+D Y T+
Sbjct: 2 TEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTI 36
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +++ G VGK++ +QN F+D Y T+ + +++ G L I D A
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTA 59
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+ Y M Y + +G + +F + N KSFE + Q++ + K + D+ +P +L+ +
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGN 116
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
KCDL R VE + + + Y + +IE S+K +ED+ LV I
Sbjct: 117 KCDLAGRTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
T K++V+G VGK++ +QN F+D Y T+
Sbjct: 2 TEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI 36
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +++ G VGK++ +QN F+D Y T+ + +++ G L I D A
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTA 59
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+ Y M Y + +G + +F + N KSFE + Q++ + K + D+ +P +L+ +
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGN 116
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
KCDL R VE + + + Y + +IE S+K +ED+ LV I
Sbjct: 117 KCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
T K++V+G VGK++ +QN F+D Y T+
Sbjct: 2 TEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI 36
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 8/168 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +++ G VGK++ +QN F+D Y T+ + +++ G L I D A
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTA 60
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+ Y M Y + +G + +F + N KSFE + ++ + + + +P +L+ +
Sbjct: 61 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKR---VKDSEDVPMVLVGN 117
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
KCDLP R V+ + + + Y + +IE S+K ++D+ LV I
Sbjct: 118 KCDLPSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREI 164
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
T K++V+G VGK++ +QN F+D Y T+
Sbjct: 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI 37
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 168 TPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTV 203
+ Y +++ G VGK++ +QN F+D Y T+
Sbjct: 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI 37
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 9/163 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
I + +++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +IW
Sbjct: 1 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVC---LDDTTVKFEIW 57
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+RY ++ +YY+ + I+++D+TN +F W +L + + L
Sbjct: 58 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQA----SPNIVIAL 113
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
+K DL R VE E +A N + ++E S+K + + +
Sbjct: 114 AGNKADLASKRAVEFQEAQAYADD-NSLLFMETSAKTAMNVNE 155
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI- 229
+ +++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +IWD
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVC---LDDTTVKFEIWDTA 60
Query: 230 ----YCTLSPI 236
Y +L+P+
Sbjct: 61 GQERYHSLAPM 71
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
K++++G+S VGK+S V FV+ +F + ++T+G F T+
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ 43
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 91/167 (54%), Gaps = 15/167 (8%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
+I + +++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +I
Sbjct: 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEI 59
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
WD AGQ+RY ++ +YY+ + I+++D+TN +SF W +L + P +
Sbjct: 60 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-------PNI 112
Query: 357 LLA---SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
++A +K DL + R V+ E ++ N + ++E S+K + + +
Sbjct: 113 VIALSGNKADLANKRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNE 158
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI- 229
+ +++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +IWD
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEIWDTA 63
Query: 230 ----YCTLSPI 236
Y +L+P+
Sbjct: 64 GQERYHSLAPM 74
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
K++++G+S VGK+S V FV+ +F + ++T+G F T+
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ 46
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 91/167 (54%), Gaps = 15/167 (8%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
+I + +++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +I
Sbjct: 4 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEI 60
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
WD AGQ+RY ++ +YY+ + I+++D+TN +SF W +L + P +
Sbjct: 61 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-------PNI 113
Query: 357 LLA---SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
++A +K DL + R V+ E ++ N + ++E S+K + + +
Sbjct: 114 VIALSGNKADLANKRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNE 159
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI- 229
+ +++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +IWD
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEIWDTA 64
Query: 230 ----YCTLSPI 236
Y +L+P+
Sbjct: 65 GQERYHSLAPM 75
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
K++++G+S VGK+S V FV+ +F + ++T+G F T+
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ 47
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 12/159 (7%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ + +++ G++ VGK+S V FV N F +N + T+G F T+ ++ ++ VK +IW
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEH---TVKFEIW 57
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+R+ ++ YY+N+ ++++D+T +SF W +L + D + L
Sbjct: 58 DTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD----IIIAL 113
Query: 358 LASKCDL----PDRQVEINEIEAVCHQYNFMSWIEVSSK 392
+ +K D +R+V E E + + + + E S+K
Sbjct: 114 VGNKIDXLQEGGERKVAREEGEKLAEEKGLL-FFETSAK 151
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
S +++ G++ VGK+S V FV N F +N + T+G F T+ ++ ++ VK +IWD
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEH---TVKFEIWDT 59
Query: 230 -----YCTLSP 235
+ +L+P
Sbjct: 60 AGQERFASLAP 70
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
T +K++++G++ VGK+S V FV N F +N + T+G F T+ ++
Sbjct: 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVT 46
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 91/167 (54%), Gaps = 15/167 (8%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
+I + +++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +I
Sbjct: 3 KICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEI 59
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
WD AGQ+RY ++ +YY+ + I+++D+TN +SF W +L + P +
Sbjct: 60 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-------PNI 112
Query: 357 LLA---SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
++A +K DL + R V+ E ++ N + ++E S+K + + +
Sbjct: 113 VIALSGNKADLANKRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNE 158
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI- 229
+ +++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +IWD
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEIWDTA 63
Query: 230 ----YCTLSPI 236
Y +L+P+
Sbjct: 64 GQERYHSLAPM 74
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
K++++G+S VGK+S V FV+ +F + ++T+G F T+
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ 46
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 91/167 (54%), Gaps = 15/167 (8%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
+I + +++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +I
Sbjct: 3 KICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEI 59
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
WD AGQ+RY ++ +YY+ + I+++D+TN +SF W +L + P +
Sbjct: 60 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-------PNI 112
Query: 357 LLA---SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
++A +K DL + R V+ E ++ N + ++E S+K + + +
Sbjct: 113 VIALSGNKADLANKRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNE 158
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI- 229
+ +++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +IWD
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEIWDTA 63
Query: 230 ----YCTLSPI 236
Y +L+P+
Sbjct: 64 GQERYHSLAPM 74
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
K++++G+S VGK+S V FV+ +F + ++T+G F T+
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ 46
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 91/167 (54%), Gaps = 15/167 (8%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
+I + +++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +I
Sbjct: 3 KICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEI 59
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
WD AGQ+RY ++ +YY+ + I+++D+TN +SF W +L + P +
Sbjct: 60 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-------PNI 112
Query: 357 LLA---SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
++A +K DL + R V+ E ++ N + ++E S+K + + +
Sbjct: 113 VIALSGNKADLANKRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNE 158
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI- 229
+ +++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +IWD
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEIWDTA 63
Query: 230 ----YCTLSPI 236
Y +L+P+
Sbjct: 64 GQERYHSLAPM 74
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
K++++G+S VGK+S V FV+ +F + ++T+G F T+
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ 46
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 91/167 (54%), Gaps = 15/167 (8%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
+I + +++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +I
Sbjct: 3 KICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEI 59
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
WD AGQ+RY ++ +YY+ + I+++D+TN +SF W +L + P +
Sbjct: 60 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-------PNI 112
Query: 357 LLA---SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
++A +K DL + R V+ E ++ N + ++E S+K + + +
Sbjct: 113 VIALSGNKADLANKRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNE 158
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI- 229
+ +++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +IWD
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEIWDTA 63
Query: 230 ----YCTLSPI 236
Y +L+P+
Sbjct: 64 GQERYHSLAPM 74
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
K++++G+S VGK+S V FV+ +F + ++T+G F T+
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ 46
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
+I + +++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +I
Sbjct: 3 KICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEI 59
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
WD AGQ+RY ++ +YY+ + I+++D+TN +SF W +L + +
Sbjct: 60 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA----SPNIVIA 115
Query: 357 LLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
L +K DL + R V+ E ++ N + ++E S+K + + +
Sbjct: 116 LSGNKADLANKRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNE 158
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI- 229
+ +++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +IWD
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEIWDTA 63
Query: 230 ----YCTLSPI 236
Y +L+P+
Sbjct: 64 GQERYHSLAPM 74
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
K++++G+S VGK+S V FV+ +F + ++T+G F T+
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ 46
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 11/159 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+ + GD+ VGK+S V FVQ+ F N T+G F TK + G K IWD AGQ
Sbjct: 26 VCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVP---CGNELHKFLIWDTAGQ 82
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA-SK 361
+R+ ++ +YY+ S +I++D+T + SF ++ +W +L ++G + +A +K
Sbjct: 83 ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELK-----EHGPENIVMAIAGNK 137
Query: 362 CDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
CDL D R+V + + + + +E S+K + IE+
Sbjct: 138 CDLSDIREVPLKDAKEYAESIGAIV-VETSAKNAINIEE 175
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 97 GFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
G PR S A LK+ ++GD+ VGK+S V FVQ+ F N T+G F TK
Sbjct: 13 GLVPRGS-AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTK 63
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ + GD+ VGK+S V FVQ+ F N T+G F TK + G K IWD
Sbjct: 26 VCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVP---CGNELHKFLIWD 78
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 83/157 (52%), Gaps = 9/157 (5%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
+I + +++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +I
Sbjct: 4 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEI 60
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
WD AGQ+RY ++ YY+ + I+++D+TN +SF W +L + +
Sbjct: 61 WDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA----SPNIVIA 116
Query: 357 LLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
L +K DL + R V+ E ++ N + + E S+K
Sbjct: 117 LSGNKADLANKRAVDFQEAQSYADD-NSLLFXETSAK 152
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI- 229
+ +++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +IWD
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEIWDTA 64
Query: 230 ----YCTLSP 235
Y +L+P
Sbjct: 65 GQERYHSLAP 74
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
K++++G+S VGK+S V FV+ +F + ++T+G F T+
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ 47
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 8/168 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +++ G VGK++ +QN F+D Y T+ + +++ G L I D A
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTA 60
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+ Y M Y + +G + +F + N KSFE + ++ + + + +P +L+ +
Sbjct: 61 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKR---VKDSEDVPMVLVGN 117
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
K DLP R V+ + + + Y + +IE S+K ++D+ LV I
Sbjct: 118 KSDLPSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREI 164
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
T K++V+G VGK++ +QN F+D Y T+
Sbjct: 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI 37
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 84/163 (51%), Gaps = 9/163 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
I + +++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +IW
Sbjct: 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVC---LDDTTVKFEIW 59
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AG +RY ++ +YY+ + I+++D+TN +F W +L + + L
Sbjct: 60 DTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQA----SPNIVIAL 115
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
+K DL R VE E +A N + ++E S+K + + +
Sbjct: 116 AGNKADLASKRAVEFQEAQAYADD-NSLLFMETSAKTAMNVNE 157
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI- 229
+ +++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +IWD
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVC---LDDTTVKFEIWDTA 62
Query: 230 ----YCTLSPI 236
Y +L+P+
Sbjct: 63 GLERYHSLAPM 73
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
K++++G+S VGK+S V FV+ +F + ++T+G F T+
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ 45
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 84/163 (51%), Gaps = 9/163 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
I + +++ G+S VGK+S V FV+ +F + ++T+ F T+ + VK +IW
Sbjct: 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVC---LDDTTVKFEIW 59
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+RY ++ +YY+ + I+++D+TN +F W +L + + L
Sbjct: 60 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQA----SPNIVIAL 115
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
+K DL R VE E +A N + ++E S+K + + +
Sbjct: 116 AGNKADLASKRAVEFQEAQAYADD-NSLLFMETSAKTAMNVNE 157
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI- 229
+ +++ G+S VGK+S V FV+ +F + ++T+ F T+ + VK +IWD
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVC---LDDTTVKFEIWDTA 62
Query: 230 ----YCTLSPI 236
Y +L+P+
Sbjct: 63 GQERYHSLAPM 73
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
K++++G+S VGK+S V FV+ +F + ++T+ F T+
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQ 45
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 90/167 (53%), Gaps = 15/167 (8%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
+I + +++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +I
Sbjct: 2 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEI 58
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
WD AG +RY ++ +YY+ + I+++D+TN +SF W +L + P +
Sbjct: 59 WDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-------PNI 111
Query: 357 LLA---SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
++A +K DL + R V+ E ++ N + ++E S+K + + +
Sbjct: 112 VIALSGNKADLANKRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNE 157
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI- 229
+ +++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +IWD
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEIWDTA 62
Query: 230 ----YCTLSPI 236
Y +L+P+
Sbjct: 63 GLERYHSLAPM 73
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
K++++G+S VGK+S V FV+ +F + ++T+G F T+
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ 45
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 89/161 (55%), Gaps = 15/161 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+ + GD+ VGK+S V FV++ F N T+G F TK + +Y K IWD AGQ
Sbjct: 8 VCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTV---QYQNELHKFLIWDTAGQ 64
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA--- 359
+R+ ++ +YY+ S II++D+T ++F ++ W +L +G P +++A
Sbjct: 65 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQ-----HGP--PSIVVAIAG 117
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMS-WIEVSSKEHLMIED 399
+KCDL D + E+ E +A + + + ++E S+K + I +
Sbjct: 118 NKCDLTDVR-EVMERDAKDYADSIHAIFVETSAKNAININE 157
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 153
LK+ ++GD+ VGK+S V FV++ F N T+G F TK + ++
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQ 50
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ + GD+ VGK+S V FV++ F N T+G F TK + +Y K IWD
Sbjct: 8 VCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTV---QYQNELHKFLIWD 60
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 84/152 (55%), Gaps = 9/152 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGK++ + F ++F K+T+GV+F+T+ + + + +K QIWD A
Sbjct: 11 FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVEN---KKIKAQIWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +RY ++ YY+ + G +I++D++ S+E+ W +L DN + L+ +
Sbjct: 68 GLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENAD-DN---VAVGLIGN 123
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSS 391
K DL R V +E + + N M + E S+
Sbjct: 124 KSDLAHLRAVPTDEAKNFAME-NQMLFTETSA 154
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGK++ + F ++F K+T+GV+F+T+ + + + +K QIWD
Sbjct: 11 FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVEN---KKIKAQIWD 65
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 33/47 (70%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
D + + KI++IGDS VGK++ + F ++F K+T+GV+F+T+ +
Sbjct: 6 DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTI 52
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 97/180 (53%), Gaps = 10/180 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ + +++ G VGK++ F+ ++F+++Y+ T + K++ G V++ I
Sbjct: 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV----LDGEEVQIDIL 71
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+ Y + Y+++ +G + +F +T +SF + ++ + + +P LL
Sbjct: 72 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLL 128
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
+ +K DL D RQV + E + Q+N ++++E S+K + D + F + R I +++ME+
Sbjct: 129 VGNKSDLEDKRQVSVEEAKNRAEQWN-VNYVETSAKTRANV-DKVFFDLMREIRARKMED 186
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 97/180 (53%), Gaps = 10/180 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ + +++ G VGK++ F+ ++F+++Y+ T + K++ G V++ I
Sbjct: 4 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV----LDGEEVQIDIL 59
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+ Y + Y+++ +G + +F +T +SF + ++ + + +P LL
Sbjct: 60 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLL 116
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
+ +K DL D RQV + E + Q+N ++++E S+K + D + F + R I +++ME+
Sbjct: 117 VGNKSDLEDKRQVSVEEAKNRAEQWN-VNYVETSAKTRANV-DKVFFDLMREIRARKMED 174
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 97/180 (53%), Gaps = 10/180 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ + +++ G VGK++ F+ ++F+++Y+ T + K++ G V++ I
Sbjct: 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV----LDGEEVQIDIL 67
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+ Y + Y+++ +G + +F +T +SF + ++ + + +P LL
Sbjct: 68 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLL 124
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
+ +K DL D RQV + E + Q+N ++++E S+K + D + F + R I +++ME+
Sbjct: 125 VGNKSDLEDKRQVSVEEAKNRAEQWN-VNYVETSAKTRANV-DKVFFDLMREIRARKMED 182
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 8/149 (5%)
Query: 260 FVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319
+QN F+D Y T+ + +++ G L I D AGQ+ Y M Y + +G
Sbjct: 30 LIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 85
Query: 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH 379
+ +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE + + +
Sbjct: 86 LCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESRQAQDLAR 142
Query: 380 QYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
Y + +IE S+K +ED+ LV I
Sbjct: 143 SYG-IPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AGQ+ Y M Y
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 76
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 77 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 133
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 134 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AGQ+ Y M Y
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 76
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 77 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 133
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 134 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 88/161 (54%), Gaps = 15/161 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+ + GD+ VGK+S + FV++ F N T+G F TK + +Y K IWD AG
Sbjct: 9 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTV---QYQNELHKFLIWDTAGL 65
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA--- 359
+R+ ++ +YY+ S II++D+T ++F ++ W +L +G P +++A
Sbjct: 66 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQ-----HGP--PSIVVAIAG 118
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMS-WIEVSSKEHLMIED 399
+KCDL D + E+ E +A + + + ++E S+K + I +
Sbjct: 119 NKCDLTDVR-EVMERDAKDYADSIHAIFVETSAKNAININE 158
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 153
LK+ ++GD+ VGK+S + FV++ F N T+G F TK + ++
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQ 51
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ + GD+ VGK+S + FV++ F N T+G F TK + +Y K IWD
Sbjct: 9 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTV---QYQNELHKFLIWD 61
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AGQ+ Y M Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AGQ+ Y M Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + + + +P +L+ +KCDL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKR---VKDSDDVPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AGQ+ Y M Y
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AGQ+ Y M Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AGQ+ Y M Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AGQ+ Y M Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDEY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AGQ+ Y M Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AGQ+ Y M Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 8/149 (5%)
Query: 260 FVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319
+QN F+D Y T+ + +++ G L I D AGQ+ Y M Y + +G
Sbjct: 23 LIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 78
Query: 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH 379
+ +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE + + +
Sbjct: 79 LCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESRQAQDLAR 135
Query: 380 QYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
Y + +IE S+K +ED+ LV I
Sbjct: 136 SYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 8/153 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AGQ+ Y M Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLV 405
+ + + Y + +IE S+K +ED+ LV
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y ++ + +++ G L I D AGQ+ Y M Y
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 77
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 78 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 134
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 135 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AGQ+ Y M Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGEICLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AGQ+ Y M Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ ++CDL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNRCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 96/180 (53%), Gaps = 10/180 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ + +++ G VGK++ F+ ++F+++Y+ T + K++ G V++ I
Sbjct: 4 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV----LDGEEVQIDIL 59
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AG + Y + Y+++ +G + +F +T +SF + ++ + + +P LL
Sbjct: 60 DTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLL 116
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
+ +K DL D RQV + E + Q+N ++++E S+K + D + F + R I +++ME+
Sbjct: 117 VGNKSDLEDKRQVSVEEAKNRAEQWN-VNYVETSAKTRANV-DKVFFDLMREIRARKMED 174
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y ++ + +++ G L I D AGQ+ Y M Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D + T+ + +++ G L I D AGQ+ Y M Y
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D GQ+ Y M Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTGGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F++ Y T+ + +++ G L I D AGQ+ Y M Y
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AG++ Y M Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGKEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D GQ+ Y M Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTTGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AG + Y M Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGHEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AG + Y M Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETXLLDILDTAGGEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AG + Y M Y
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGLEEYSAMRDQY 76
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 77 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 133
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 134 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AG + Y M Y
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGHEEYSAMRDQY 89
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + ++ + + + +P +L+ +KCDLP R V+
Sbjct: 90 MRTGEGFLCVFAINNTKSFEDIHHYREQIKR---VKDSEDVPMVLVGNKCDLPSRTVDTK 146
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K ++D+ LV I
Sbjct: 147 QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 84/156 (53%), Gaps = 9/156 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ + +++ G VGK++ F+ ++F+++Y+ T + K++ G V++ I
Sbjct: 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV----LDGEEVQIDIL 57
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+ Y + Y+++ +G + +F +T +SF + ++ + + +P LL
Sbjct: 58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLL 114
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
+ +K DL D RQV + E + Q+N ++++E S+K
Sbjct: 115 VGNKSDLEDKRQVSVEEAKNRADQWN-VNYVETSAK 149
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 96/181 (53%), Gaps = 11/181 (6%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ + +++ G VGK++ F+ ++F+++Y+ T + K++ G V++ I
Sbjct: 5 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV----LDGEEVQIDIL 60
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHD-LDSKCILDNGAMLPCL 356
D AG + Y + Y+++ +G +++F +T +SF + +++ L K D +P L
Sbjct: 61 DTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK---IPLL 117
Query: 357 LLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
++ +K DL + RQV + E + ++ + ++E S+K + D + F + R I +K+M
Sbjct: 118 VVGNKSDLEERRQVPVEEARSKAEEWG-VQYVETSAKTRANV-DKVFFDLMREIRTKKMS 175
Query: 416 E 416
E
Sbjct: 176 E 176
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AG + Y M Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGGEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 96/181 (53%), Gaps = 11/181 (6%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ + +++ G VGK++ F+ ++F+++Y+ T + K++ G V++ I
Sbjct: 1 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV----LDGEEVQIDIL 56
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHD-LDSKCILDNGAMLPCL 356
D AG + Y + Y+++ +G +++F +T +SF + +++ L K D +P L
Sbjct: 57 DTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK---IPLL 113
Query: 357 LLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
++ +K DL + RQV + E + ++ + ++E S+K + D + F + R I +K+M
Sbjct: 114 VVGNKSDLEERRQVPVEEARSKAEEWG-VQYVETSAKTRANV-DKVFFDLMREIRTKKMS 171
Query: 416 E 416
E
Sbjct: 172 E 172
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AGQ+ M Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEASAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AG + Y M Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGLEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AG + Y M Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGVEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AGQ+ Y M Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +K DL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKSDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AG + Y M Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGIEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +KCDL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AGQ+ Y M Y
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 72
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + ++ + + + +P +L+ +K DLP R V+
Sbjct: 73 MRTGEGFLCVFAINNTKSFEDIHHYREQIKR---VKDSEDVPMVLVGNKSDLPSRTVDTK 129
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K ++D+ LV I
Sbjct: 130 QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AGQ+ Y M Y
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 72
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + ++ + + + +P +L+ +K DLP R V+
Sbjct: 73 MRTGEGFLCVFAINNTKSFEDIHHYREQIKR---VKDSEDVPMVLVGNKSDLPSRTVDTK 129
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K ++D+ LV I
Sbjct: 130 QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 9/164 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D AGQ+ Y M Y
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 89
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSF + ++ + K + D+ +P +L+ +KCDLP R V+
Sbjct: 90 MRTGEGFLCVFAINNSKSFADINLYREQI--KRVKDSDD-VPMVLVGNKCDLPTRTVDTK 146
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
+ + Y + +IE S+K +ED+ LV R I RM++
Sbjct: 147 QAHELAKSYG-IPFIETSAKTRQGVEDAFYTLV-REIRQYRMKK 188
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 104/191 (54%), Gaps = 16/191 (8%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
Q + I I G +VGK+S FV+ +F+D+Y T+ F TKL++ G+ LQ+
Sbjct: 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLIT---VNGQEYHLQL 58
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD--NGAMLP 354
D AGQD Y + Y + +G I+++ +T+ KSFE V++ H +LD +P
Sbjct: 59 VDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHG----KLLDMVGKVQIP 113
Query: 355 CLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
+L+ +K DL +R + E +A+ +N +++E S+KE+ + +++ I+ +++
Sbjct: 114 IMLVGNKKDLHMERVISYEEGKALAESWN-AAFLESSAKEN---QTAVDVFRRIILEAEK 169
Query: 414 MEEEAVERKSS 424
M+ + KSS
Sbjct: 170 MDGACSQGKSS 180
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
Q+ S I I G +VGK+S FV+ +F+D+Y T+ F TKL++ G+ LQ+
Sbjct: 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLIT---VNGQEYHLQL 58
Query: 227 WDIYCTLSPIQIP-TYPILITGDSTVGKTSYVQGF-----VQNKFLD 267
D P TY I I G V + ++ F + K LD
Sbjct: 59 VDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLD 105
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
KI ++G +VGK+S FV+ +F+D+Y T+ F TKL++
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLIT 48
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ GD GKTS F Q F YK T+G+DF + ++ G V LQIWDI GQ
Sbjct: 9 IVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLP--GNLNVTLQIWDIGGQ 66
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQW 337
M Y + G ++++D+TN +SFE++ W
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDW 101
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
I++ GD GKTS F Q F YK T+G+DF + ++ G V LQIWDI
Sbjct: 9 IVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLP--GNLNVTLQIWDI 63
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
LKI+V+GD GKTS F Q F YK T+G+DF
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDF 43
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 87/155 (56%), Gaps = 13/155 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I I G +VGK+S FV+ +F+D+Y T+ F TKL++ G+ LQ+ D AGQ
Sbjct: 9 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLIT---VNGQEYHLQLVDTAGQ 64
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD--NGAMLPCLLLAS 360
D Y + Y + +G I+++ +T+ KSFE V++ H +LD +P +L+ +
Sbjct: 65 DEYSIFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHG----KLLDMVGKVQIPIMLVGN 119
Query: 361 KCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEH 394
K DL +R + E +A+ +N +++E S+KE+
Sbjct: 120 KKDLHMERVISYEEGKALAESWN-AAFLESSAKEN 153
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
Q+ S I I G +VGK+S FV+ +F+D+Y T+ F TKL++ G+ LQ+
Sbjct: 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLIT---VNGQEYHLQL 58
Query: 227 WDIYCTLSPIQIP-TYPILITGDSTVGKTSYVQGF-----VQNKFLD 267
D P TY I I G V + ++ F + K LD
Sbjct: 59 VDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLD 105
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
KI ++G +VGK+S FV+ +F+D+Y T+ F TKL++
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLIT 48
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 22/173 (12%)
Query: 204 GVDFSTKLLSHKKYGGRPVKLQIWDIYCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQN 263
GVD T+ L + G +P + + +++ GD GKTS + F
Sbjct: 10 GVDLGTENLYFQSMAGEE------------APPGVRSVKVVLVGDGGCGKTSLLMVFADG 57
Query: 264 KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMF 323
F ++Y TV + L + G+PV L IWD AGQD Y + ++Y ++ ++ F
Sbjct: 58 AFPESYTPTVFERYMVNL----QVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCF 113
Query: 324 DLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIE 375
D+T+ SF+++ +W +++ C +P +++ K DL + +N++
Sbjct: 114 DVTSPNSFDNIFNRWYPEVNHFC-----KKVPIIVVGCKTDLRKDKSLVNKLR 161
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 142 GVDFSTKLLSHKKYGGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKN 201
GVD T+ L + G +P S +++ GD GKTS + F F ++Y
Sbjct: 10 GVDLGTENLYFQSMAGEE----APPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTP 65
Query: 202 TVGVDFSTKLLSHKKYGGRPVKLQIWDI-----YCTLSPIQIPTYPILI 245
TV + L + G+PV L IWD Y L P+ P +L+
Sbjct: 66 TVFERYMVNL----QVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
+K++++GD GKTS + F F ++Y TV
Sbjct: 35 VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV 67
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 87/157 (55%), Gaps = 17/157 (10%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I I G +VGK+S FV+ +F+D+Y T+ F TKL++ G+ LQ+ D AGQ
Sbjct: 4 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLIT---VNGQEYHLQLVDTAGQ 59
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKH----DLDSKCILDNGAMLPCLLL 358
D Y + Y + +G I+++ +T+ KSFE V++ H D+ K +P +L+
Sbjct: 60 DEYSIFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKV------QIPIMLV 112
Query: 359 ASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEH 394
+K DL +R + E +A+ +N +++E S+KE+
Sbjct: 113 GNKKDLHMERVISYEEGKALAESWN-AAFLESSAKEN 148
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCT 232
I I G +VGK+S FV+ +F+D+Y T+ F TKL++ G+ LQ+ D
Sbjct: 4 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLIT---VNGQEYHLQLVDTAGQ 59
Query: 233 LSPIQIP-TYPILITGDSTVGKTSYVQGF-----VQNKFLD 267
P TY I I G V + ++ F + K LD
Sbjct: 60 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLD 100
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
KI ++G +VGK+S FV+ +F+D+Y T+ F TKL++
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLIT 43
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 41/204 (20%)
Query: 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS--------------- 283
+Y ++ G+S+VGK+S V ++ F +N T+G F T +++
Sbjct: 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKN 65
Query: 284 -----------------HKKYGGR--PVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFD 324
H Y +K IWD AGQ+RY + +YY+ + I++FD
Sbjct: 66 NNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD 125
Query: 325 LTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFM 384
++N + + W + L + +L+A+K D QV+I E++ N +
Sbjct: 126 ISNSNTLDRAKTWVNQLKI------SSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLL 179
Query: 385 SWIEVSSKEHLMIEDSMNFLVDRI 408
+I+ S+K I++ L + I
Sbjct: 180 -FIQTSAKTGTNIKNIFYMLAEEI 202
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 97 GFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
G E + S K +++G+S+VGK+S V ++ F +N T+G F T +++
Sbjct: 1 GMEKKSS-----YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVN 50
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 213
SY ++ G+S+VGK+S V ++ F +N T+G F T +++
Sbjct: 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVN 50
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D A Q+ Y M Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAAQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +K DL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKXDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D Y T+ + +++ G L I D A Q+ Y M Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAAQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +K DL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKXDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD AGQ+
Sbjct: 9 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 64
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SFE+V +W ++ C P +L+ +K
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 119
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 120 DLRDDKDTIEKLK 132
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD
Sbjct: 9 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 64
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASF 92
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 154
+K +V+GD VGKT + + N F Y TV ++S ++ K
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGK 51
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD AGQ+
Sbjct: 11 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 66
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SFE+V +W ++ C P +L+ +K
Sbjct: 67 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 121
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 122 DLRDDKDTIEKLK 134
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD
Sbjct: 11 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 66
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 67 DYDRLRPLSYPQTDVSLICFSLVSPASF 94
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 154
+K +V+GD VGKT + + N F Y TV ++S ++ K
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGK 53
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD AGQ+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SFE+V +W ++ C P +L+ +K
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 117
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 118 DLRDDKDTIEKLK 130
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASF 90
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------YGGRP 159
+K +V+GD VGKT + + N F Y TV ++S ++ K G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 160 YGTFSPIQTPSYLILITGDSTVGKTSY 186
Y P+ P + + S V S+
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASF 90
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD AGQ+
Sbjct: 8 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 63
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SFE+V +W ++ C P LL+ +K
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PHTPILLVGTKL 118
Query: 363 DLPDRQVEINEIE 375
DL D + I +
Sbjct: 119 DLRDDKDTIERLR 131
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD
Sbjct: 8 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 63
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASF 91
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------YGGRP 159
+K +V+GD VGKT + + N F Y TV ++S ++ K G
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 160 YGTFSPIQTPSYLILITGDSTVGKTSY 186
Y P+ P + + S V S+
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASF 91
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD AGQ+
Sbjct: 8 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 63
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SFE+V +W ++ C P LL+ +K
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PHTPILLVGTKL 118
Query: 363 DLPDRQVEINEIE 375
DL D + I +
Sbjct: 119 DLRDDKDTIERLR 131
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD
Sbjct: 8 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 63
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASF 91
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------YGGRP 159
+K +V+GD VGKT + + N F Y TV ++S ++ K G
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 160 YGTFSPIQTPSYLILITGDSTVGKTSY 186
Y P+ P + + S V S+
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASF 91
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD AGQ+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SFE+V +W ++ C P +L+ +K
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 117
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 118 DLRDDKDTIEKLK 130
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASF 90
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------YGGRP 159
+K +V+GD VGKT + + N F Y TV ++S ++ K G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 160 YGTFSPIQTPSYLILITGDSTVGKTSY 186
Y P+ P + + S V S+
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASF 90
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD AGQ+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SFE+V +W ++ C P +L+ +K
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 117
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 118 DLRDDKDTIEKLK 130
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASF 90
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------YGGRP 159
+K +V+GD VGKT + + N F Y TV ++S ++ K G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 160 YGTFSPIQTPSYLILITGDSTVGKTSY 186
Y P+ P + + S V S+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASF 90
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD AGQ+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SFE+V +W ++ C P +L+ +K
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 117
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 118 DLRDDKDTIEKLK 130
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASF 90
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------YGGRP 159
+K +V+GD VGKT + + N F Y TV ++S ++ K G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 160 YGTFSPIQTPSYLILITGDSTVGKTSY 186
Y P+ P + + S V S+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASF 90
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD AGQ+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SFE+V +W ++ C P LL+ +K
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PHTPILLVGTKL 117
Query: 363 DLPDRQVEINEIE 375
DL D + I +
Sbjct: 118 DLRDDKDTIERLR 130
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASF 90
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------YGGRP 159
+K +V+GD VGKT + + N F Y TV ++S ++ K G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 160 YGTFSPIQTPSYLILITGDSTVGKTSY 186
Y P+ P + + S V S+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASF 90
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD AGQ+
Sbjct: 34 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 89
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SFE+V +W ++ C P +L+ +K
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 144
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 145 DLRDDKDTIEKLK 157
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD
Sbjct: 34 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 89
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASF 117
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 15/105 (14%)
Query: 97 GFEPRPSDAETV------LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
G PR S E + +K +V+GD VGKT + + N F Y TV ++S ++
Sbjct: 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 72
Query: 151 SHKK---------YGGRPYGTFSPIQTPSYLILITGDSTVGKTSY 186
K G Y P+ P + + S V S+
Sbjct: 73 VDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 117
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ +QN F+D T+ + +++ G L I D AGQ+ Y M Y
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
+ +G + +F + N KSFE + Q++ + K + D+ +P +L+ +K DL R VE
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKSDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + + Y + +IE S+K +ED+ LV I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD AGQ+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SFE+V +W ++ C P +L+ +K
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 117
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 118 DLRDDKDTIEKLK 130
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASF 90
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------YGGRP 159
+K +V+GD VGKT + + N F Y TV ++S ++ K G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 160 YGTFSPIQTPSYLILITGDSTVGKTSY 186
Y P+ P + + S V S+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASF 90
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD AGQ+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SFE+V +W ++ C P +L+ +K
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 117
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 118 DLRDDKDTIEKLK 130
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASF 90
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------YGGRP 159
+K +V+GD VGKT + + N F Y TV ++S ++ K G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 160 YGTFSPIQTPSYLILITGDSTVGKTSY 186
Y P+ P + + S V S+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASF 90
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD AGQ+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SFE+V +W ++ C P +L+ +K
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 117
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 118 DLRDDKDTIEKLK 130
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASF 90
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------YGGRP 159
+K +V+GD VGKT + + N F Y TV ++S ++ K G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 160 YGTFSPIQTPSYLILITGDSTVGKTSY 186
Y P+ P + + S V S+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASF 90
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD AGQ+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SFE+V +W ++ C P +L+ +K
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 117
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 118 DLRDDKDTIEKLK 130
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASF 90
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------YGGRP 159
+K +V+GD VGKT + + N F Y TV ++S ++ K G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 160 YGTFSPIQTPSYLILITGDSTVGKTSY 186
Y P+ P + + S V S+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASF 90
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD AGQ+
Sbjct: 17 VVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 72
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SFE+V +W ++ C P +L+ +K
Sbjct: 73 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 127
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 128 DLRDDKDTIEKLK 140
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD
Sbjct: 17 VVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 72
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 73 DYDRLRPLSYPQTDVFLICFSLVSPASF 100
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------YGGRP 159
+K +V+GD VGKT + + N F Y TV ++S ++ K G
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 73
Query: 160 YGTFSPIQTPSYLILITGDSTVGKTSY 186
Y P+ P + + S V S+
Sbjct: 74 YDRLRPLSYPQTDVFLICFSLVSPASF 100
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD AGQ+
Sbjct: 26 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 81
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SFE+V +W ++ C P +L+ +K
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 136
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 137 DLRDDKDTIEKLK 149
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD
Sbjct: 26 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 81
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASF 109
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------YGGRP 159
+K +V+GD VGKT + + N F Y TV ++S ++ K G
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 82
Query: 160 YGTFSPIQTPSYLILITGDSTVGKTSY 186
Y P+ P + + S V S+
Sbjct: 83 YDRLRPLSYPQTDVFLICFSLVSPASF 109
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 88/161 (54%), Gaps = 13/161 (8%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
Q + I I G +VGK+S FV+ +F+D+ T+ F TKL++ G+ LQ+
Sbjct: 1 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLIT---VNGQEYHLQL 56
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD--NGAMLP 354
D AGQD Y + Y + +G I+++ +T+ KSFE V++ H +LD +P
Sbjct: 57 VDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHG----KLLDMVGKVQIP 111
Query: 355 CLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEH 394
+L+ +K DL +R + E +A+ +N +++E S+KE+
Sbjct: 112 IMLVGNKKDLHMERVISYEEGKALAESWN-AAFLESSAKEN 151
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
Q+ S I I G +VGK+S FV+ +F+D+ T+ F TKL++ G+ LQ+
Sbjct: 1 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLIT---VNGQEYHLQL 56
Query: 227 WDIYCTLSPIQIP-TYPILITGDSTVGKTSYVQGF-----VQNKFLD 267
D P TY I I G V + ++ F + K LD
Sbjct: 57 VDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLD 103
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
KI ++G +VGK+S FV+ +F+D+ T+ F TKL++
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLIT 46
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 90/193 (46%), Gaps = 19/193 (9%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
+ GD VGKT + + NKF +Y TV +FS + G+ V L +WD AGQ+
Sbjct: 13 VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV----AVDGQIVNLGLWDTAGQE 68
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y+ +D ++ F L ++ S+E+V+ +W +L +P +L+ +K
Sbjct: 69 DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRR-----FAPNVPIVLVGTKL 123
Query: 363 DLPDRQ---------VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
DL D + + + E + Q ++IE SSK ++ + + ++ R
Sbjct: 124 DLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPR 183
Query: 414 MEEEAVERKSSIR 426
+E RK+ R
Sbjct: 184 RKEVPRRRKNHRR 196
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
+ GD VGKT + + NKF +Y TV +FS + G+ V L +WD
Sbjct: 13 VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV----AVDGQIVNLGLWDTAGQE 68
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ I + S + K SY
Sbjct: 69 DYSRLRPLSYRGADIFVLAFSLISKASY 96
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKF--------LDNYKNTVGVDFSTKLLSHKKYGGRP- 159
+K + +GD VGKT + + NKF DN+ V VD L G+
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQED 69
Query: 160 YGTFSPIQTPSYLILITGDSTVGKTSY 186
Y P+ I + S + K SY
Sbjct: 70 YSRLRPLSYRGADIFVLAFSLISKASY 96
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 86/157 (54%), Gaps = 9/157 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+PTY +++ GD VGK++ F Q F+D+Y T+ + L H + + L +
Sbjct: 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY----LKHTEIDNQWAILDVL 71
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+ + M Y + DG +I++ +T++ SFE V ++ H L + + P +L
Sbjct: 72 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRF-HQLILRV--KDRESFPMIL 128
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKE 393
+A+K DL R+V ++ + + +YN + +IE S+K+
Sbjct: 129 VANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSAKD 164
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGK + + N F Y TV ++S ++ G+PV L +WD AGQ+
Sbjct: 14 VVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 69
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SFE+V +W ++ C P +L+ +K
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 124
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 125 DLRDDKDTIEKLK 137
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGK + + N F Y TV ++S ++ G+PV L +WD
Sbjct: 14 VVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 69
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASF 97
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK-------- 154
S +K +V+GD VGK + + N F Y TV ++S ++ K
Sbjct: 5 SSGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 64
Query: 155 -YGGRPYGTFSPIQTPSYLILITGDSTVGKTSY 186
G Y P+ P + + S V S+
Sbjct: 65 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 97
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N Y TV ++S ++ G+PV L +WD AGQ+
Sbjct: 34 VVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 89
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SFE+V +W ++ C P +L+ +K
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 144
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 145 DLRDDKDTIEKLK 157
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N Y TV ++S ++ G+PV L +WD
Sbjct: 34 VVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 89
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASF 117
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 15/105 (14%)
Query: 97 GFEPRPSDAETV------LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
G PR S E + +K +V+GD VGKT + + N Y TV ++S ++
Sbjct: 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM 72
Query: 151 SHKK---------YGGRPYGTFSPIQTPSYLILITGDSTVGKTSY 186
K G Y P+ P + + S V S+
Sbjct: 73 VDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 117
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD AG +
Sbjct: 10 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGLE 65
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SFE+V +W ++ C P +L+ +K
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 120
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 121 DLRDDKDTIEKLK 133
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD
Sbjct: 10 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGLE 65
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASF 93
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------YGGRP 159
+K +V+GD VGKT + + N F Y TV ++S ++ K G
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 66
Query: 160 YGTFSPIQTPSYLILITGDSTVGKTSY 186
Y P+ P + + S V S+
Sbjct: 67 YDRLRPLSYPQTDVFLICFSLVSPASF 93
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD AG +
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGLE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SFE+V +W ++ C P +L+ +K
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 117
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 118 DLRDDKDTIEKLK 130
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGLE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASF 90
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------YGGRP 159
+K +V+GD VGKT + + N F Y TV ++S ++ K G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 160 YGTFSPIQTPSYLILITGDSTVGKTSY 186
Y P+ P + + S V S+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASF 90
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD AG +
Sbjct: 34 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGLE 89
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SFE+V +W ++ C P +L+ +K
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 144
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 145 DLRDDKDTIEKLK 157
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD
Sbjct: 34 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGLE 89
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASF 117
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 15/105 (14%)
Query: 97 GFEPRPSDAETV------LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
G PR S E + +K +V+GD VGKT + + N F Y TV ++S ++
Sbjct: 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 72
Query: 151 SHKK---------YGGRPYGTFSPIQTPSYLILITGDSTVGKTSY 186
K G Y P+ P + + S V S+
Sbjct: 73 VDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 117
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 87/170 (51%), Gaps = 10/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +++ G VGK++ FVQ F++ Y T+ + ++ + + L+I D A
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV----EVDAQQCMLEILDTA 59
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCI-LDNGAMLPCLLLA 359
G +++ M +Y +N G +++ +T + +F + DL + + + + +P +L+
Sbjct: 60 GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDL----QDLREQILRVKDTDDVPMILVG 115
Query: 360 SKCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+KCDL D +V E + + Q+N +++E S+K + + + LV +I
Sbjct: 116 NKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD AG +
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGLE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SFE+V +W ++ C P +L+ +K
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 117
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 118 DLRDDKDTIEKLK 130
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGLE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASF 90
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------YGGRP 159
+K +V+GD VGKT + + N F Y TV ++S ++ K G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 160 YGTFSPIQTPSYLILITGDSTVGKTSY 186
Y P+ P + + S V S+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASF 90
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 21/178 (11%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ GD VGKT + F + + Y TV +FS + KY L +WD AGQ
Sbjct: 26 IVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVM----KYKNEEFILHLWDTAGQ 81
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQW----KHDLDSKCILDNGAMLPCLL 357
+ Y + + Y +SD ++ F + NR SF+++ +W KH +D+ +L
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTA---------KTVL 132
Query: 358 LASKCDL---PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
+ K DL V E + +C + +++IE SS + + + VD I +K
Sbjct: 133 VGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNK 190
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
I++ GD VGKT + F + + Y TV +FS + KY L +WD
Sbjct: 26 IVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVM----KYKNEEFILHLWDTAGQ 81
Query: 230 --YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ +++ + +TS+
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSF 110
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 101 RPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146
+ + + LKI+V+GD VGKT + F + + Y TV +FS
Sbjct: 16 KIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS 61
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 87/170 (51%), Gaps = 10/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +++ G VGK++ FVQ F++ Y T+ + ++ + + L+I D A
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV----EVDAQQCMLEILDTA 61
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCI-LDNGAMLPCLLLA 359
G +++ M +Y +N G +++ +T + +F + DL + + + + +P +L+
Sbjct: 62 GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDL----QDLREQILRVKDTDDVPMILVG 117
Query: 360 SKCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+KCDL D +V E + + Q+N +++E S+K + + + LV +I
Sbjct: 118 NKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 84/157 (53%), Gaps = 9/157 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+PTY +++ GD VGK++ F Q F+D Y T+ + H + + L +
Sbjct: 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYR----KHTEIDNQWAILDVL 71
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+ + M Y + DG +I++ +T++ SFE V ++ H L + + P +L
Sbjct: 72 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRF-HQLILRV--KDRESFPMIL 128
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKE 393
+A+K DL R+V ++ + + +YN + +IE S+K+
Sbjct: 129 VANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSAKD 164
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ K PV L +WD AGQ+
Sbjct: 13 VVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSK----PVNLGLWDTAGQE 68
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + S+E+V +W ++ C P +L+ +K
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-----PSTPIILVGTKL 123
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 124 DLRDDKDTIEKLK 136
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ K PV L +WD
Sbjct: 13 VVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSK----PVNLGLWDTAGQE 68
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V SY
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASY 96
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK-------- 154
S +K +V+GD VGKT + + N F Y TV ++S ++ K
Sbjct: 4 SGGSQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWD 63
Query: 155 -YGGRPYGTFSPIQTPSYLILITGDSTVGKTSY 186
G Y P+ P + + S V SY
Sbjct: 64 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASY 96
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ K PV L +WD AGQ+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSK----PVNLGLWDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + S+E+V +W ++ C P +L+ +K
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-----PSTPIILVGTKL 117
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 118 DLRDDKDTIEKLK 130
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ K PV L +WD
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSK----PVNLGLWDTAGQE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V SY
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASY 90
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------YGGRP 159
+K +V+GD VGKT + + N F Y TV ++S ++ K G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 160 YGTFSPIQTPSYLILITGDSTVGKTSY 186
Y P+ P + + S V SY
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASY 90
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ K PV L +WD AGQ+
Sbjct: 14 VVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSK----PVNLGLWDTAGQE 69
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + S+E+V +W ++ C P +L+ +K
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-----PSTPIILVGTKL 124
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 125 DLRDDKDTIEKLK 137
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 14/106 (13%)
Query: 156 GGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 215
GG G+ I+ ++ GD VGKT + + N F Y TV ++S ++
Sbjct: 1 GGGSGGSMQAIKC-----VVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDS 55
Query: 216 KYGGRPVKLQIWDI-----YCTLSPIQIPTYPILITGDSTVGKTSY 256
K PV L +WD Y L P+ P + + S V SY
Sbjct: 56 K----PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASY 97
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------YGGRP 159
+K +V+GD VGKT + + N F Y TV ++S ++ K G
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 70
Query: 160 YGTFSPIQTPSYLILITGDSTVGKTSY 186
Y P+ P + + S V SY
Sbjct: 71 YDRLRPLSYPQTDVFLICFSLVSPASY 97
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 85/157 (54%), Gaps = 9/157 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+PTY +++ GD VGK++ F Q F+ +Y T+ + L H + + L +
Sbjct: 11 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY----LKHTEIDNQWAILDVL 66
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+ + M Y + DG +I++ +T++ SFE V ++ H L + + P +L
Sbjct: 67 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRF-HQLILRV--KDRESFPMIL 123
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKE 393
+A+K DL R+V ++ + + +YN + +IE S+K+
Sbjct: 124 VANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSAKD 159
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 10/141 (7%)
Query: 235 PIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 294
P+ T ++ GD VGKT + + NKF Y TV +++ ++ GG P L
Sbjct: 2 PLGSQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTL 57
Query: 295 QIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAML 353
++D AGQ+ Y + + Y +D ++ F + + SFE+V + W ++ C
Sbjct: 58 GLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKT 112
Query: 354 PCLLLASKCDLPDRQVEINEI 374
P LL+ ++ DL D I ++
Sbjct: 113 PFLLVGTQIDLRDDPSTIEKL 133
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 165 PIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
P+ + + ++ GD VGKT + + NKF Y TV +++ ++ GG P L
Sbjct: 2 PLGSQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTL 57
Query: 225 QIWDI-----YCTLSPIQIPTYPILITGDSTVGKTSY 256
++D Y L P+ P + + S V +S+
Sbjct: 58 GLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 94
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K +V+GD VGKT + + NKF Y TV +++ ++ GG PY
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPY 55
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D AGQ+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D ++ F + + SFE+V + W ++ C P LL+ ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
DL D I ++
Sbjct: 118 DLRDDPSTIEKL 129
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V +S+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K +V+GD VGKT + + NKF Y TV +++ ++ GG PY
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPY 51
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D AGQ+
Sbjct: 10 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 65
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D ++ F + + SFE+V + W ++ C P LL+ ++
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 120
Query: 363 DLPDRQVEINEI 374
DL D I ++
Sbjct: 121 DLRDDPSTIEKL 132
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D
Sbjct: 10 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 65
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V +S+
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 93
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K +V+GD VGKT + + NKF Y TV +++ ++ GG PY
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPY 54
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 84/157 (53%), Gaps = 9/157 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+PTY +++ GD VGK++ F Q F+ Y T+ + L H + + L +
Sbjct: 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSY----LKHTEIDNQWAILDVL 71
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+ + M Y + DG +I++ +T++ SFE V ++ H L + + P +L
Sbjct: 72 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRF-HQLILRV--KDRESFPMIL 128
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKE 393
+A+K DL R+V ++ + + +YN + +IE S+K+
Sbjct: 129 VANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSAKD 164
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 24/181 (13%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKTS V + N + Y T +FS + GRPV+LQ+ D AGQD
Sbjct: 24 VLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVV----SVDGRPVRLQLCDTAGQD 79
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
+ + + Y N+D ++ F + + SF++V + W ++ C P +L+ ++
Sbjct: 80 EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-----PKAPIILVGTQS 134
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL + + E++ KE + E++ L + I + +E A+ +K
Sbjct: 135 DLREDVKVLIELD--------------KCKEKPVPEEAAKLLAEEIKAASYIECSALTQK 180
Query: 423 S 423
+
Sbjct: 181 N 181
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++ GD VGKTS V + N + Y T +FS + GRPV+LQ+ D
Sbjct: 24 VLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVV----SVDGRPVRLQLCD 74
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKF--------LDNYKNTVGVD 144
+K +++GD VGKTS V + N + DN+ V VD
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVD 64
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D AGQ+
Sbjct: 14 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 69
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D ++ F + + SFE+V + W ++ C P LL+ ++
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 124
Query: 363 DLPDRQVEINEI 374
DL D I ++
Sbjct: 125 DLRDDPSTIEKL 136
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D
Sbjct: 14 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 69
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V +S+
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 97
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
A +K +V+GD VGKT + + NKF Y TV +++ ++ GG PY
Sbjct: 7 AMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPY 58
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D AGQ+
Sbjct: 17 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 72
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D ++ F + + SFE+V + W ++ C P LL+ ++
Sbjct: 73 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 127
Query: 363 DLPDRQVEINEI 374
DL D I ++
Sbjct: 128 DLRDDPSTIEKL 139
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D
Sbjct: 17 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 72
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V +S+
Sbjct: 73 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 100
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K +V+GD VGKT + + NKF Y TV +++ ++ GG PY
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPY 61
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D AGQ+
Sbjct: 9 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 64
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D ++ F + + SFE+V + W ++ C P LL+ ++
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 119
Query: 363 DLPDRQVEINEI 374
DL D I ++
Sbjct: 120 DLRDDPSTIEKL 131
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D
Sbjct: 9 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 64
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V +S+
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 92
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K +V+GD VGKT + + NKF Y TV +++ ++ GG PY
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPY 53
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D AGQ+
Sbjct: 10 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 65
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D ++ F + + SFE+V + W ++ C P LL+ ++
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 120
Query: 363 DLPDRQVEINEI 374
DL D I ++
Sbjct: 121 DLRDDPSTIEKL 132
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D
Sbjct: 10 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 65
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V +S+
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 93
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K +V+GD VGKT + + NKF Y TV +++ ++ GG PY
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPY 54
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D AGQ+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D ++ F + + SFE+V + W ++ C P LL+ ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
DL D I ++
Sbjct: 118 DLRDDPSTIEKL 129
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V +S+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K +V+GD VGKT + + NKF Y TV +++ ++ GG PY
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPY 51
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D AGQ+
Sbjct: 8 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 63
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D ++ F + + SFE+V + W ++ C P LL+ ++
Sbjct: 64 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 118
Query: 363 DLPDRQVEINEI 374
DL D I ++
Sbjct: 119 DLRDDPSTIEKL 130
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D
Sbjct: 8 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 63
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V +S+
Sbjct: 64 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 91
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K +V+GD VGKT + + NKF Y TV +++ ++ GG PY
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPY 52
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 247 GDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI 306
GD VGKT + + N F +Y TV +FS ++ G V L +WD AGQ+ Y
Sbjct: 13 GDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD----GNTVNLGLWDTAGQEDYN 68
Query: 307 CMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDL- 364
+ + Y+ +D I+ F L ++ S+E+V +W +L +P +L+ +K DL
Sbjct: 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY-----APGVPIILVGTKLDLR 123
Query: 365 PDRQVEINEIEAV 377
D+Q I+ AV
Sbjct: 124 DDKQFFIDHPGAV 136
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 177 GDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI-----YC 231
GD VGKT + + N F +Y TV +FS ++ G V L +WD Y
Sbjct: 13 GDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD----GNTVNLGLWDTAGQEDYN 68
Query: 232 TLSPIQIPTYPILITGDSTVGKTSY 256
L P+ + I S + K SY
Sbjct: 69 RLRPLSYRGADVFILAFSLISKASY 93
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 105 AETVLKILVIGDSTVGKTSYVQGFVQNKF--------LDNYKNTVGVDFSTKLLSHKKYG 156
A +K + +GD VGKT + + N F DN+ V VD +T L
Sbjct: 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTA 62
Query: 157 GRP-YGTFSPIQTPSYLILITGDSTVGKTSY 186
G+ Y P+ + I S + K SY
Sbjct: 63 GQEDYNRLRPLSYRGADVFILAFSLISKASY 93
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D AGQ+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D ++ F + + SFE+V + W ++ C P LL+ ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
DL D I ++
Sbjct: 118 DLRDDPSTIEKL 129
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V +S+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K +V+GD VGKT + + NKF Y TV +++ ++ GG PY
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPY 51
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D AGQ+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D ++ F + + SFE+V + W ++ C P LL+ ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
DL D I ++
Sbjct: 118 DLRDDPSTIEKL 129
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V +S+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K +V+GD VGKT + + NKF Y TV +++ ++ GG PY
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPY 51
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 11/136 (8%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
+ GD VGKT + + N F +Y TV +FS ++ + G V L +WD AGQ+
Sbjct: 12 VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVN----GATVNLGLWDTAGQE 67
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y+ +D I+ F L ++ S+E+V +W +L +P +L+ +K
Sbjct: 68 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----PGVPIVLVGTKL 122
Query: 363 DL-PDRQVEINEIEAV 377
DL D+Q I+ AV
Sbjct: 123 DLRDDKQFFIDHPGAV 138
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
+ GD VGKT + + N F +Y TV +FS ++ + G V L +WD
Sbjct: 12 VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVN----GATVNLGLWDTAGQE 67
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ + I S + K SY
Sbjct: 68 DYNRLRPLSYRGADVFILAFSLISKASY 95
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------Y 155
A +K + +GD VGKT + + N F +Y TV +FS ++ +
Sbjct: 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTA 64
Query: 156 GGRPYGTFSPIQTPSYLILITGDSTVGKTSY 186
G Y P+ + I S + K SY
Sbjct: 65 GQEDYNRLRPLSYRGADVFILAFSLISKASY 95
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 21/175 (12%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ GD VGKT + F + + Y TV +FS + KY L +WD AGQ
Sbjct: 25 IVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVM----KYKNEEFILHLWDTAGQ 80
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQW----KHDLDSKCILDNGAMLPCLL 357
+ Y + + Y +SD ++ F + NR SF+++ +W KH +D+ +L
Sbjct: 81 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTA---------KTVL 131
Query: 358 LASKCDL---PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+ K DL V E + +C + +++IE SS + + + VD I
Sbjct: 132 VGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 186
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
I++ GD VGKT + F + + Y TV +FS + KY L +WD
Sbjct: 25 IVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVM----KYKNEEFILHLWDTAGQ 80
Query: 230 --YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ +++ + +TS+
Sbjct: 81 EEYDRLRPLSYADSDVVLLCFAVNNRTSF 109
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 101 RPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146
+ + + LKI+V+GD VGKT + F + + Y TV +FS
Sbjct: 15 KIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS 60
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D AGQ+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D ++ F + + SFE+V + W ++ C P LL+ ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
DL D I ++
Sbjct: 118 DLRDDPSTIEKL 129
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V +S+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K +V+GD VGKT + + NKF Y TV +++ ++ GG PY
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPY 51
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D AGQ+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D ++ F + + SFE+V + W ++ C P LL+ ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
DL D I ++
Sbjct: 118 DLRDDPSTIEKL 129
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V +S+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K +V+GD VGKT + + NKF Y TV +++ ++ GG PY
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPY 51
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 83/158 (52%), Gaps = 10/158 (6%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K++ F+Q+ F+ +Y T+ ++ + + R +L I D AGQ+ + M Y
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCV----IDDRAARLDILDTAGQEEFGAMREQY 73
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP-DRQVEI 371
+ +G +++F +T+R SFE + +++ + + + P +L+ +K DL RQV
Sbjct: 74 MRTGEGFLLVFSVTDRGSFEEIYKFQRQI---LRVKDRDEFPMILIGNKADLDHQRQVTQ 130
Query: 372 NEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
E + + Q ++++E S+K + ++ + + LV R+I
Sbjct: 131 EEGQQLARQLK-VTYMEASAKIRMNVDQAFHELV-RVI 166
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D AGQ+
Sbjct: 9 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 64
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D ++ F + + SFE+V + W ++ C P LL+ ++
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 119
Query: 363 DLPDRQVEINEI 374
DL D I ++
Sbjct: 120 DLRDDPSTIEKL 131
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D
Sbjct: 9 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 64
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V +S+
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 92
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K +V+GD VGKT + + NKF Y TV +++ ++ GG PY
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPY 53
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D AGQ+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D ++ F + + SFE+V + W ++ C P LL+ ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
DL D I ++
Sbjct: 118 DLRDDPSTIEKL 129
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V +S+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K +V+GD VGKT + + NKF Y TV +++ ++ GG PY
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPY 51
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD AG +
Sbjct: 159 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM----VDGKPVNLGLWDTAGLE 214
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SF V +W ++ C P +L+ +K
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-----PNTPIILVGTKL 269
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 270 DLRDDKDTIEKLK 282
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD
Sbjct: 159 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM----VDGKPVNLGLWDTAGLE 214
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASF 242
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------Y 155
A+ ++K +V+GD VGKT + + N F Y TV ++S ++ K
Sbjct: 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 211
Query: 156 GGRPYGTFSPIQTPSYLILITGDSTVGKTSY 186
G Y P+ P + + S V S+
Sbjct: 212 GLEDYDRLRPLSYPQTDVFLICFSLVSPASF 242
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D AGQ+
Sbjct: 7 VVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D ++ F + + SFE+V + W ++ C P LL+ ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
DL D I ++
Sbjct: 118 DLRDDPSTIEKL 129
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D
Sbjct: 7 VVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V +S+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K +V+GD VGKT + + NKF Y TV +++ ++ GG PY
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPY 51
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD AG +
Sbjct: 159 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM----VDGKPVNLGLWDTAGLE 214
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SF V +W ++ C P +L+ +K
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-----PNTPIILVGTKL 269
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 270 DLRDDKDTIEKLK 282
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD
Sbjct: 159 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM----VDGKPVNLGLWDTAGLE 214
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASF 242
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------Y 155
A+ ++K +V+GD VGKT + + N F Y TV ++S ++ K
Sbjct: 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 211
Query: 156 GGRPYGTFSPIQTPSYLILITGDSTVGKTSY 186
G Y P+ P + + S V S+
Sbjct: 212 GLEDYDRLRPLSYPQTDVFLICFSLVSPASF 242
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD AG +
Sbjct: 159 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM----VDGKPVNLGLWDTAGLE 214
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F L + SF V +W ++ C P +L+ +K
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-----PNTPIILVGTKL 269
Query: 363 DLPDRQVEINEIE 375
DL D + I +++
Sbjct: 270 DLRDDKDTIEKLK 282
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD
Sbjct: 159 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM----VDGKPVNLGLWDTAGLE 214
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASF 242
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------Y 155
A+ ++K +V+GD VGKT + + N F Y TV ++S ++ K
Sbjct: 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 211
Query: 156 GGRPYGTFSPIQTPSYLILITGDSTVGKTSY 186
G Y P+ P + + S V S+
Sbjct: 212 GLEDYDRLRPLSYPQTDVFLICFSLVSPASF 242
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 86/170 (50%), Gaps = 10/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +++ G VGK++ FVQ F+D Y T+ + ++ + + L+I D A
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQV----EVDCQQCMLEILDTA 59
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCI-LDNGAMLPCLLLA 359
G +++ M +Y +N G +++ +T + +F + DL + + + + +P +L+
Sbjct: 60 GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDL----QDLREQILRVKDTEDVPMILVG 115
Query: 360 SKCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+KCDL D +V E + + Q+ +++E S+K + + + LV +I
Sbjct: 116 NKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
K++V+G VGK++ FVQ F+D Y T+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTI 36
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + NKF Y TV +++ + GG P L ++D AGQ+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTV----XIGGEPYTLGLFDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D ++ F + + SFE+V + W ++ C P LL+ ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
DL D I ++
Sbjct: 118 DLRDDPSTIEKL 129
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + NKF Y TV +++ + GG P L ++D
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTV----XIGGEPYTLGLFDTAGQE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V +S+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K +V+GD VGKT + + NKF Y TV +++ + GG PY
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTV----XIGGEPY 51
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 22/160 (13%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y + + G VGK+S V FV+ F ++Y TV D +++S K LQI D
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDK---SICTLQITDTT 59
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKS-------FESVVQWKHDLDSKCILDNGAML 353
G ++ M R+ I+++ +T+R+S +E + + K D++S +
Sbjct: 60 GSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES---------I 110
Query: 354 PCLLLASKCD-LPDRQVEINEIEAVCHQYNFMSWIEVSSK 392
P +L+ +KCD P R+V+ +E EA+ + +++E S+K
Sbjct: 111 PIMLVGNKCDESPSREVQSSEAEALARTWK-CAFMETSAK 149
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGK + + NKF Y TV +++ ++ GG P L ++D AGQ+
Sbjct: 14 VVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 69
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D ++ F + + SFE+V + W ++ C P LL+ ++
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 124
Query: 363 DLPDRQVEINEI 374
DL D I ++
Sbjct: 125 DLRDDPSTIEKL 136
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGK + + NKF Y TV +++ ++ GG P L ++D
Sbjct: 14 VVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 69
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V +S+
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 97
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
S +K +V+GD VGK + + NKF Y TV +++ ++ GG PY
Sbjct: 5 SSGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPY 58
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + NKF Y TV +++ ++ GG P L + D AGQ+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLRDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D ++ F + + SFE+V + W ++ C P LL+ ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
DL D I ++
Sbjct: 118 DLRDDPSTIEKL 129
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + NKF Y TV +++ ++ GG P L + D
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLRDTAGQE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V +S+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K +V+GD VGKT + + NKF Y TV +++ ++ GG PY
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPY 51
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + NKF Y V +++ ++ GG P L ++D AGQ+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D ++ F + + SFE+V + W ++ C P LL+ ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
DL D I ++
Sbjct: 118 DLRDDPSTIEKL 129
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + NKF Y V +++ ++ GG P L ++D
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V +S+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K +V+GD VGKT + + NKF Y V +++ ++ GG PY
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVM----IGGEPY 51
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+ P Q I++ GDS GKT+ + F ++ F +NY TV +++ + + +
Sbjct: 16 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF----EIDTQRI 71
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGA 351
+L +WD +G Y + + Y +SD +I FD++ ++ +SV+ +WK ++ C N
Sbjct: 72 ELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTK 129
Query: 352 MLPCLLLASKCDL 364
M LL+ K DL
Sbjct: 130 M---LLVGCKSDL 139
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL--------LSHKKYGGRP-Y 160
KI+V+GDS GKT+ + F ++ F +NY TV +++ LS G P Y
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 84
Query: 161 GTFSPIQTP-SYLILITGD 178
P+ P S +LI D
Sbjct: 85 DNVRPLSYPDSDAVLICFD 103
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 165 PIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
P Q I++ GDS GKT+ + F ++ F +NY TV +++ + + ++L
Sbjct: 18 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF----EIDTQRIEL 73
Query: 225 QIWDI-----YCTLSPIQIP 239
+WD Y + P+ P
Sbjct: 74 SLWDTSGSPYYDNVRPLSYP 93
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+ P Q I++ GDS GKT+ + F ++ F +NY TV +++ + + +
Sbjct: 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF----EIDTQRI 76
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGA 351
+L +WD +G Y + + Y +SD +I FD++ ++ +SV+ +WK ++ C N
Sbjct: 77 ELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTK 134
Query: 352 MLPCLLLASKCDL 364
M LL+ K DL
Sbjct: 135 M---LLVGCKSDL 144
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 156 GGRPYGT-FSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 214
G P G+ P Q I++ GDS GKT+ + F ++ F +NY TV +++
Sbjct: 13 GLVPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF--- 69
Query: 215 KKYGGRPVKLQIWDI-----YCTLSPIQIP 239
+ + ++L +WD Y + P+ P
Sbjct: 70 -EIDTQRIELSLWDTSGSPYYDNVRPLSYP 98
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 97 GFEPRPS----DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL--- 149
G PR S + KI+V+GDS GKT+ + F ++ F +NY TV +++
Sbjct: 13 GLVPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEID 72
Query: 150 -----LSHKKYGGRP-YGTFSPIQTP-SYLILITGD 178
LS G P Y P+ P S +LI D
Sbjct: 73 TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFD 108
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 85/170 (50%), Gaps = 15/170 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I G VGKTS FV+ +F + Y TV +S K+++ G L + D AGQ
Sbjct: 27 VVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVT---LGKDEFHLHLVDTAGQ 82
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSF---ESVVQWKHDLDSKCILDNGAMLPCLLLA 359
D Y + + G ++++ +T+ SF ES+ Q H+ K +P +L+
Sbjct: 83 DEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKT------RVPVVLVG 136
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+K DL P+R+V+ E + + + +++E S++E+ + + ++ I
Sbjct: 137 NKADLSPEREVQAVEGKKLAESWG-ATFMESSARENQLTQGIFTKVIQEI 185
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
K++++G VGKTS FV+ +F + Y TV
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTV 57
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 89/175 (50%), Gaps = 9/175 (5%)
Query: 232 TLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 291
++ P T+ +++ G VGK++ F+Q+ F+ +Y T+ D TK+ S G P
Sbjct: 1 SMDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICS---VDGIP 56
Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA 351
+L I D AGQ+ + M Y + G +++F + +R+SF V + + D+
Sbjct: 57 ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD-- 114
Query: 352 MLPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLV 405
P +L+ +K DL RQV +E A ++ +++ E S+K L ++++ LV
Sbjct: 115 -FPVVLVGNKADLESQRQVPRSEASAFGASHH-VAYFEASAKLRLNVDEAFEQLV 167
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 10/138 (7%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
I T ++ GD VGKT + + NKF Y TV +++ ++ GG P L ++
Sbjct: 5 IQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLF 60
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCL 356
D AG + Y + + Y +D ++ F + + SFE+V + W ++ C P L
Sbjct: 61 DTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFL 115
Query: 357 LLASKCDLPDRQVEINEI 374
L+ ++ DL D I ++
Sbjct: 116 LVGTQIDLRDDPSTIEKL 133
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D
Sbjct: 11 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGLE 66
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V +S+
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 94
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K +V+GD VGKT + + NKF Y TV +++ ++ GG PY
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPY 55
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D AG +
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGLE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D ++ F + + SFE+V + W ++ C P LL+ ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
DL D I ++
Sbjct: 118 DLRDDPSTIEKL 129
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + NKF Y TV +++ ++ GG P L ++D
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGLE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V +S+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K +V+GD VGKT + + NKF Y TV +++ ++ GG PY
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPY 51
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 86/170 (50%), Gaps = 10/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +++ G VGK++ FVQ F++ Y T+ + ++ + + L+I D A
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV----EVDCQQCMLEILDTA 59
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCI-LDNGAMLPCLLLA 359
G +++ M +Y +N G +++ +T + +F + DL + + + + +P +L+
Sbjct: 60 GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDL----QDLREQILRVKDTEDVPMILVG 115
Query: 360 SKCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+KCDL D +V E + + Q+ +++E S+K + + + LV +I
Sbjct: 116 NKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + NK Y TV +++ ++ GG P L ++D AGQ+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D ++ F + + SFE+V + W ++ C P LL+ ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
DL D I ++
Sbjct: 118 DLRDDPSTIEKL 129
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI---- 229
++ GD VGKT + + NK Y TV +++ ++ GG P L ++D
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V +S+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K +V+GD VGKT + + NK Y TV +++ ++ GG PY
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVM----IGGEPY 51
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ GDS GKT+ + F ++ F +NY TV +++ + + ++L +WD +G
Sbjct: 10 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF----EIDTQRIELSLWDTSGS 65
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
Y + + Y +SD +I FD++ ++ +SV+ +WK ++ C N M LL+ K
Sbjct: 66 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKM---LLVGCK 120
Query: 362 CDL 364
DL
Sbjct: 121 SDL 123
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL--------LSHKKYGGRP-Y 160
KI+V+GDS GKT+ + F ++ F +NY TV +++ LS G P Y
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68
Query: 161 GTFSPIQTP-SYLILITGD 178
P+ P S +LI D
Sbjct: 69 DNVRPLSYPDSDAVLICFD 87
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
I++ GDS GKT+ + F ++ F +NY TV +++ + + ++L +WD
Sbjct: 10 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF----EIDTQRIELSLWDTSGS 65
Query: 230 --YCTLSPIQIP 239
Y + P+ P
Sbjct: 66 PYYDNVRPLSYP 77
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Query: 247 GDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI 306
GD VGKT + + N F +Y TV +FS ++ G V L +WD AGQ+ Y
Sbjct: 13 GDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVD----GSTVNLGLWDTAGQEDYN 68
Query: 307 CMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365
+ + Y+ +D ++ F L ++ S+E++ +W +L +P +L+ +K DL
Sbjct: 69 RLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-----PGIPIVLVGTKLDLR 123
Query: 366 D 366
D
Sbjct: 124 D 124
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 166 IQTPSYLILIT-GDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
+ T ++ +T GD VGKT + + N F +Y TV +FS ++ G V L
Sbjct: 1 MSTARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVD----GSTVNL 56
Query: 225 QIWDI-----YCTLSPIQIPTYPILITGDSTVGKTSY 256
+WD Y L P+ + + S + K SY
Sbjct: 57 GLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASY 93
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKF--------LDNYKNTVGVDFSTKLLSHKKYGGRP- 159
+K + +GD VGKT + + N F DN+ V VD ST L G+
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
Query: 160 YGTFSPIQTPSYLILITGDSTVGKTSY 186
Y P+ + + S + K SY
Sbjct: 67 YNRLRPLSYRGADVFLLAFSLISKASY 93
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 29/152 (19%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + N F Y TV ++S ++ G+PV L +WD AGQ+
Sbjct: 9 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 64
Query: 304 RYICMSRVYYQNSDG-------------------CIIMFDLTNRKSFESV-VQWKHDLDS 343
Y + + Y + G +I F L + SFE+V +W ++
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 344 KCILDNGAMLPCLLLASKCDLPDRQVEINEIE 375
C P +L+ +K DL D + I +++
Sbjct: 125 HC-----PNTPIILVGTKLDLRDDKDTIEKLK 151
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 154
+K +V+GD VGKT + + N F Y TV ++S ++ K
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGK 51
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 243 ILITGDSTVGKTSYVQGFVQ--NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ + G++TVGK++ + F +KFL +Y T GV+ ++ V+L + D A
Sbjct: 23 VAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPD-TTVSVELFLLDTA 81
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G D Y Y+ I++FD+++ +SFES W L S D L +L+A+
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKS-ARPDRERPLRAVLVAN 140
Query: 361 KCDLPDRQVEI 371
K DLP ++ ++
Sbjct: 141 KTDLPPQRHQV 151
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 93 ASVIGFEPRPSDAETVL--KILVIGDSTVGKTSYVQGFVQ--NKFLDNYKNTVGVD 144
AS++ E +P D L K+ V+G++TVGK++ + F +KFL +Y T GV+
Sbjct: 3 ASMVKKEVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVE 58
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 13/166 (7%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+ + G GKT++V +F ++ TVG + +K V ++IWDI GQ
Sbjct: 25 LTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNM-------RKVTKGNVTIKIWDIGGQ 77
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
R+ M Y + + + M D +R+ E+ H+L K L +P L+L +K
Sbjct: 78 PRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQG---IPVLVLGNKR 134
Query: 363 DLP---DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLV 405
DLP D + I ++ Q + +S KE I+ ++ +L+
Sbjct: 135 DLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 180
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ G GKT+ ++ F + +D T+G F+ K L H+ + KL IWD+ GQ
Sbjct: 21 LLMLGLDNAGKTTILKKF-NGEDVDTISPTLG--FNIKTLEHRGF-----KLNIWDVGGQ 72
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
R Y++++DG I + D +R+ + + +L S + + A L+ A+K
Sbjct: 73 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDC---QRELQSLLVEERLAGATLLIFANKQ 129
Query: 363 DLP 365
DLP
Sbjct: 130 DLP 132
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ G GKT+ ++ F + +D T+G F+ K L H+ + KL IWD+ GQ
Sbjct: 19 LLMLGLDNAGKTTILKKF-NGEDIDTISPTLG--FNIKTLEHRGF-----KLNIWDVGGQ 70
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
R Y++++DG I + D +R+ + + +L S + + A L+ A+K
Sbjct: 71 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDC---QRELQSLLVEERLAGATLLIFANKQ 127
Query: 363 DLP 365
DLP
Sbjct: 128 DLP 130
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ G GKT+ ++ F + +D T+G F+ K L H+ + KL IWD+ GQ
Sbjct: 21 LLMLGLDNAGKTTILKKF-NGEDVDTISPTLG--FNIKTLEHRGF-----KLNIWDVGGQ 72
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
R Y++++DG I + D +R+ + + +L S + + A L+ A+K
Sbjct: 73 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDC---QRELQSLLVEERLAGATLLIFANKQ 129
Query: 363 DLP 365
DLP
Sbjct: 130 DLP 132
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 21/147 (14%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
K+S V FV+ F D Y T+ D +++S K LQI D G ++ M R+
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIE-DTYRQVISCDK---SVCTLQITDTTGSHQFPAMQRLS 76
Query: 313 YQNSDGCIIMFDLTNRKSFES-------VVQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365
I++F +T+++S E +VQ K ++ +P +L+ +KCD
Sbjct: 77 ISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED---------IPVMLVGNKCDET 127
Query: 366 DRQVEINEIEAVCHQYNFMSWIEVSSK 392
R+V+ E +AV ++ +++E S+K
Sbjct: 128 QREVDTREAQAVAQEWK-CAFMETSAK 153
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 10/124 (8%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
++ GD VGKT + + + F + Y TV ++ + GG+ L ++D AGQ+
Sbjct: 22 VVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV----TVGGKQYLLGLYDTAGQE 77
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +D +I F + N SF++V +W +L + +P LL+ ++
Sbjct: 78 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-----EYAPNVPFLLIGTQI 132
Query: 363 DLPD 366
DL D
Sbjct: 133 DLRD 136
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL-LSHKKY--------GGR 158
+LK +V+GD VGKT + + + F + Y TV ++ + + K+Y G
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 77
Query: 159 PYGTFSPIQTPSYLILITGDSTVGKTSY 186
Y P+ P + + S V S+
Sbjct: 78 DYDRLRPLSYPMTDVFLICFSVVNPASF 105
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 12/104 (11%)
Query: 161 GTFSPIQTPSYLIL---ITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 217
G S P L+L + GD VGKT + + + F + Y TV ++ +
Sbjct: 6 GRSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV----TV 61
Query: 218 GGRPVKLQIWDI-----YCTLSPIQIPTYPILITGDSTVGKTSY 256
GG+ L ++D Y L P+ P + + S V S+
Sbjct: 62 GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASF 105
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GD GKT + F +++F + Y TV ++ + + G+ V+L +WD AGQ
Sbjct: 12 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y ++D ++ F + + S E++ + W ++ C +P +L+ +K
Sbjct: 68 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 122
Query: 362 CDL 364
DL
Sbjct: 123 KDL 125
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
++I GD GKT + F +++F + Y TV ++ + + G+ V+L +WD
Sbjct: 12 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 67
Query: 230 --YCTLSPIQIPTYPILI 245
Y L P+ P +++
Sbjct: 68 EDYDRLRPLSYPDTDVIL 85
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GD GKT + F +++F + Y TV ++ + + G+ V+L +WD AGQ
Sbjct: 10 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 65
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y ++D ++ F + + S E++ + W ++ C +P +L+ +K
Sbjct: 66 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 120
Query: 362 CDL 364
DL
Sbjct: 121 KDL 123
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
++I GD GKT + F +++F + Y TV ++ + + G+ V+L +WD
Sbjct: 10 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 65
Query: 230 --YCTLSPIQIPTYPILI 245
Y L P+ P +++
Sbjct: 66 EDYDRLRPLSYPDTDVIL 83
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GD GKT + F +++F + Y TV ++ + + G+ V+L +WD AGQ
Sbjct: 9 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 64
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y ++D ++ F + + S E++ + W ++ C +P +L+ +K
Sbjct: 65 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 119
Query: 362 CDL 364
DL
Sbjct: 120 KDL 122
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
++I GD GKT + F +++F + Y TV ++ + + G+ V+L +WD
Sbjct: 9 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 64
Query: 230 --YCTLSPIQIPTYPILI 245
Y L P+ P +++
Sbjct: 65 EDYDRLRPLSYPDTDVIL 82
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GD GKT + F +++F + Y TV ++ ++ + G+ V+L +WD AGQ
Sbjct: 28 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY----IADIEVDGKQVELALWDTAGQ 83
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y ++D ++ F + + S E++ + W ++ C +P +L+ +K
Sbjct: 84 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 138
Query: 362 CDL 364
DL
Sbjct: 139 KDL 141
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
++I GD GKT + F +++F + Y TV ++ ++ + G+ V+L +WD
Sbjct: 28 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY----IADIEVDGKQVELALWDTAGQ 83
Query: 230 --YCTLSPIQIPTYPILI 245
Y L P+ P +++
Sbjct: 84 EDYDRLRPLSYPDTDVIL 101
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 72/139 (51%), Gaps = 13/139 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GD GKT+ +Q ++ + + Y TV +++ L + ++ V+L +WD +G
Sbjct: 13 LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR----VELSLWDTSGS 68
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
Y + + Y +SD ++ FD++ ++ +S + +W+ + ILD LL+ K
Sbjct: 69 PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTE-----ILDYCPSTRVLLIGCK 123
Query: 362 CDLPDRQVEINEIEAVCHQ 380
DL + +++ + + HQ
Sbjct: 124 TDL---RTDLSTLMELSHQ 139
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GD GKT + F +++F + Y TV ++ + + G+ V+L +WD AGQ
Sbjct: 10 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 65
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y ++D ++ F + + S E++ + W ++ C +P +L+ +K
Sbjct: 66 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 120
Query: 362 CDL 364
DL
Sbjct: 121 KDL 123
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
++I GD GKT + F +++F + Y TV ++ + + G+ V+L +WD
Sbjct: 10 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 65
Query: 230 --YCTLSPIQIPTYPILI 245
Y L P+ P +++
Sbjct: 66 EDYDRLRPLSYPDTDVIL 83
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 72/139 (51%), Gaps = 13/139 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GD GKT+ +Q ++ + + Y TV +++ L + ++ V+L +WD +G
Sbjct: 14 LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR----VELSLWDTSGS 69
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
Y + + Y +SD ++ FD++ ++ +S + +W+ + ILD LL+ K
Sbjct: 70 PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTE-----ILDYCPSTRVLLIGCK 124
Query: 362 CDLPDRQVEINEIEAVCHQ 380
DL + +++ + + HQ
Sbjct: 125 TDL---RTDLSTLMELSHQ 140
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GD GKT + F +++F + Y TV ++ + + G+ V+L +WD AGQ
Sbjct: 8 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 63
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y ++D ++ F + + S E++ + W ++ C +P +L+ +K
Sbjct: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 118
Query: 362 CDL 364
DL
Sbjct: 119 KDL 121
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
++I GD GKT + F +++F + Y TV ++ + + G+ V+L +WD
Sbjct: 8 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 63
Query: 230 --YCTLSPIQIPTYPILI 245
Y L P+ P +++
Sbjct: 64 EDYDRLRPLSYPDTDVIL 81
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GD GKT + F +++F + Y TV ++ + + G+ V+L +WD AGQ
Sbjct: 9 LVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 64
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y ++D ++ F + + S E++ + W ++ C +P +L+ +K
Sbjct: 65 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 119
Query: 362 CDL 364
DL
Sbjct: 120 KDL 122
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
++I GD GKT + F +++F + Y TV ++ + + G+ V+L +WD
Sbjct: 9 LVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 64
Query: 230 --YCTLSPIQIPTYPILI 245
Y L P+ P +++
Sbjct: 65 EDYDRLRPLSYPDTDVIL 82
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 72/139 (51%), Gaps = 13/139 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GD GKT+ +Q ++ + + Y TV +++ L + ++ V+L +WD +G
Sbjct: 30 LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR----VELSLWDTSGS 85
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
Y + + Y +SD ++ FD++ ++ +S + +W+ + ILD LL+ K
Sbjct: 86 PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTE-----ILDYCPSTRVLLIGCK 140
Query: 362 CDLPDRQVEINEIEAVCHQ 380
DL + +++ + + HQ
Sbjct: 141 TDL---RTDLSTLMELSHQ 156
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GD GKT + F +++F + Y TV ++ + + G+ V+L +WD AGQ
Sbjct: 11 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 66
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y ++D ++ F + + S E++ + W ++ C +P +L+ +K
Sbjct: 67 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 121
Query: 362 CDL 364
DL
Sbjct: 122 KDL 124
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
++I GD GKT + F +++F + Y TV ++ + + G+ V+L +WD
Sbjct: 11 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 66
Query: 230 --YCTLSPIQIPTYPILI 245
Y L P+ P +++
Sbjct: 67 EDYDRLRPLSYPDTDVIL 84
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GD GKT + F +++F + Y TV ++ + + G+ V+L +WD AGQ
Sbjct: 28 LVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 83
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y ++D ++ F + + S E++ + W ++ C +P +L+A+K
Sbjct: 84 EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-----PNVPIILVANK 138
Query: 362 CDL 364
DL
Sbjct: 139 KDL 141
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
+++ GD GKT + F +++F + Y TV ++ + + G+ V+L +WD
Sbjct: 28 LVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 83
Query: 230 --YCTLSPIQIPTYPILI 245
Y L P+ P +++
Sbjct: 84 EDYDRLRPLSYPDTDVIL 101
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GD GKT + F +++F + Y TV ++ + + G+ V+L +WD AGQ
Sbjct: 10 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 65
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y ++D ++ F + + S E++ + W ++ C +P +L+ +K
Sbjct: 66 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 120
Query: 362 CDL 364
DL
Sbjct: 121 KDL 123
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
++I GD GKT + F +++F + Y TV ++ + + G+ V+L +WD
Sbjct: 10 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 65
Query: 230 --YCTLSPIQIPTYPILI 245
Y L P+ P +++
Sbjct: 66 EDYDRLRPLSYPDTDVIL 83
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 20/124 (16%)
Query: 290 RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDN 349
R + +WD+ GQD+ + R YY N+DG I + D +R+ + + H + ++ L +
Sbjct: 59 RNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKD 118
Query: 350 GAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+ L+ A+K DLP N MS EV+ K HL N+ +
Sbjct: 119 AII---LVFANKQDLP----------------NAMSAAEVTEKLHLNTIRERNWFIQS-T 158
Query: 410 CSKR 413
C+ R
Sbjct: 159 CATR 162
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
Query: 251 VGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSR 310
GKT+ ++ F + +D T+G F+ K L H+ + KL IWD+ GQ R
Sbjct: 29 AGKTTILKKF-NGEDVDTISPTLG--FNIKTLEHRGF-----KLNIWDVGGQKSLRSYWR 80
Query: 311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365
Y++++DG I + D +R+ + + +L S + + A L+ A+K DLP
Sbjct: 81 NYFESTDGLIWVVDSADRQRXQDC---QRELQSLLVEERLAGATLLIFANKQDLP 132
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ G GKT+ ++ F + +D T+G F+ K L H+ + KL IWD+ G
Sbjct: 4 LLMLGLDNAGKTTILKKF-NGEDVDTISPTLG--FNIKTLEHRGF-----KLNIWDVGGL 55
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
R Y++++DG I + D +R+ + + +L S + + A L+ A+K
Sbjct: 56 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDC---QRELQSLLVEERLAGATLLIFANKQ 112
Query: 363 DLP 365
DLP
Sbjct: 113 DLP 115
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 13/166 (7%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+ + G GKT++V +F ++ TVG + +K V +++WDI GQ
Sbjct: 25 LTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM-------RKITKGNVTIKLWDIGGQ 77
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
R+ M Y + + M D +++ E+ H+L K L +P L+L +K
Sbjct: 78 PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG---IPVLVLGNKR 134
Query: 363 DLP---DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLV 405
DLP D + I ++ Q + +S KE I+ ++ +L+
Sbjct: 135 DLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 180
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKT+ + K + V F+ + +++K VK +WD+ GQ
Sbjct: 325 ILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKN-----VKFNVWDVGGQ 376
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
D+ + R YY + G I + D +R + Q H + + + + + L+ A+K
Sbjct: 377 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII---LIFANKQ 433
Query: 363 DLPD 366
DLPD
Sbjct: 434 DLPD 437
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 66/123 (53%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GD GKT + F +++F + Y TV ++ ++ + G+ V+L +WD AGQ
Sbjct: 28 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY----IADIEVDGKQVELALWDTAGQ 83
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y ++D ++ F + + S E++ + W ++ K N +P +L+ +K
Sbjct: 84 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV--KHFXPN---VPIILVGNK 138
Query: 362 CDL 364
DL
Sbjct: 139 KDL 141
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
++I GD GKT + F +++F + Y TV ++ ++ + G+ V+L +WD
Sbjct: 28 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY----IADIEVDGKQVELALWDTAGQ 83
Query: 230 --YCTLSPIQIPTYPILI 245
Y L P+ P +++
Sbjct: 84 EDYDRLRPLSYPDTDVIL 101
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GD GKT + F +++F Y TV ++ + + G+ V+L +WD AGQ
Sbjct: 8 LVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 63
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + Y ++D ++ F + + S E++ + W ++ C +P +L+ +K
Sbjct: 64 EDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 118
Query: 362 CDL 364
DL
Sbjct: 119 KDL 121
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 13/164 (7%)
Query: 245 ITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR 304
+ G GKT++V +F ++ TVG + +K V +++WDI GQ R
Sbjct: 36 LVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM-------RKITKGNVTIKLWDIGGQPR 88
Query: 305 YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDL 364
+ M Y + + M D +++ E+ H+L K L +P L+L +K DL
Sbjct: 89 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG---IPVLVLGNKRDL 145
Query: 365 P---DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLV 405
P D + I ++ Q + +S KE I+ ++ +L+
Sbjct: 146 PGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 189
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKT+ + + + T+G F+ + + +K + +WD+ GQ
Sbjct: 3 ILMVGLDGAGKTTVLYKLKLGEVITTIP-TIG--FNVETVQYKN-----ISFTVWDVGGQ 54
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
DR + R YY+N++G I + D +R + + ++ L N A L+ A+K
Sbjct: 55 DRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAA---WLVFANKQ 111
Query: 363 DLPD 366
DLP+
Sbjct: 112 DLPE 115
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GD GKT + +++F + Y TV ++ + + G+ V+L +WD AGQ
Sbjct: 6 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 61
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y ++D ++ F + + S E++ + W ++ C +P +L+ +K
Sbjct: 62 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 116
Query: 362 CDL 364
DL
Sbjct: 117 KDL 119
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GD GKT + +++F + Y TV ++ + + G+ V+L +WD AGQ
Sbjct: 6 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 61
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y ++D ++ F + + S E++ + W ++ C +P +L+ +K
Sbjct: 62 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 116
Query: 362 CDL 364
DL
Sbjct: 117 KDL 119
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GD GKT + +++F + Y TV ++ + + G+ V+L +WD AGQ
Sbjct: 8 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 63
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y ++D ++ F + + S E++ + W ++ C +P +L+ +K
Sbjct: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 118
Query: 362 CDL 364
DL
Sbjct: 119 KDL 121
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 290 RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDN 349
+ + +WD+ GQDR + R YY+N++G I + D +R + + ++ L N
Sbjct: 59 KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRN 118
Query: 350 GAMLPCLLLASKCDLPD 366
A L+ A+K DLP+
Sbjct: 119 AA---WLVFANKQDLPE 132
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 15/126 (11%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKT+ + K + V F+ + +++K VK +WD+ GQ
Sbjct: 15 ILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKN-----VKFNVWDVGGQ 66
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL--AS 360
D+ + R YY + G I + D +R + Q H I+++ M ++L A+
Sbjct: 67 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR-----IINDREMRDAIILIFAN 121
Query: 361 KCDLPD 366
K DLPD
Sbjct: 122 KQDLPD 127
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 15/126 (11%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKT+ + K + V F+ + +++K VK +WD+ GQ
Sbjct: 3 ILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKN-----VKFNVWDVGGQ 54
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL--AS 360
D+ + R YY + G I + D +R + Q H I+++ M ++L A+
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR-----IINDREMRDAIILIFAN 109
Query: 361 KCDLPD 366
K DLPD
Sbjct: 110 KQDLPD 115
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GD GKT + +++F + Y TV ++ ++ + G+ V+L +WD AGQ
Sbjct: 8 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY----IADIEVDGKQVELALWDTAGQ 63
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y ++D ++ F + + S E++ + W ++ C +P +L+ +K
Sbjct: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 118
Query: 362 CDL 364
DL
Sbjct: 119 KDL 121
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKT+ + K + V F+ + +++K VK +WD+ GQ
Sbjct: 3 ILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKN-----VKFNVWDVGGQ 54
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
D+ + R YY + G I + D +R + Q H + + + + + L+ A+K
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII---LIFANKQ 111
Query: 363 DLPD 366
DLPD
Sbjct: 112 DLPD 115
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 15/126 (11%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKT+ + K + V F+ + +++K VK +WD+ GQ
Sbjct: 16 ILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKN-----VKFNVWDVGGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL--AS 360
D+ + R YY + G I + D +R + Q H I+++ M ++L A+
Sbjct: 68 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR-----IINDREMRDAIILIFAN 122
Query: 361 KCDLPD 366
K DLPD
Sbjct: 123 KQDLPD 128
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GD GKT + +++F + Y TV ++ + + G+ V+L +WD AGQ
Sbjct: 8 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 63
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y ++D ++ F + + S E++ + W ++ C +P +L+ +K
Sbjct: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 118
Query: 362 CDL 364
DL
Sbjct: 119 KDL 121
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GD GKT + +++F + Y TV ++ + + G+ V+L +WD AGQ
Sbjct: 8 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 63
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y ++D ++ F + + S E++ + W ++ C +P +L+ +K
Sbjct: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 118
Query: 362 CDL 364
DL
Sbjct: 119 KDL 121
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 12/125 (9%)
Query: 290 RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDN 349
+ + ++WD+ GQ R Y+ ++D I + D T+R KH+L +LD
Sbjct: 64 KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVA---KHEL--YALLDE 118
Query: 350 GAMLPCLLL--ASKCDLPD--RQVEINEIEAVCHQYNFMSW--IEVSSKEHLMIEDSMNF 403
+ LLL A+K DLPD + EI E V N +W ++ SSK + + M++
Sbjct: 119 DELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMN-RTWTIVKSSSKTGDGLVEGMDW 177
Query: 404 LVDRI 408
LV+R+
Sbjct: 178 LVERL 182
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKT+ + + + T+G F+ + + +K + +WD+ GQ
Sbjct: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEYKN-----ICFTVWDVGGQ 71
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
DR + + Y+QN+ G I + D +R+ + V +L ++D LL A+K
Sbjct: 72 DRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVA---DELQKMLLVDELRDAVLLLFANKQ 128
Query: 363 DLPD 366
DLP+
Sbjct: 129 DLPN 132
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+ I G + VGK++ V F+ +F+ Y T+ + V ++I D AGQ
Sbjct: 31 LAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR----HQATIDDEVVSMEILDTAGQ 86
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+ I + + +G ++++D+T+R SFE V+ K+ LD + + +L+ +K
Sbjct: 87 EDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDE---IKKPKNVTLILVGNKA 142
Query: 363 DLP-DRQVEINEIEAVCHQ 380
DL RQV E E + +
Sbjct: 143 DLDHSRQVSTEEGEKLATE 161
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 290 RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDN 349
+ + +WD+ GQDR + R YY+N++G I + D +R + + ++ L N
Sbjct: 59 KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRN 118
Query: 350 GAMLPCLLLASKCDLPD 366
L+ A+K DLP+
Sbjct: 119 AV---WLVFANKQDLPE 132
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GD GKT + + +F + Y TV ++ ++ + GR V+L +WD AGQ
Sbjct: 13 LVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENY----VADVEVDGRRVELALWDTAGQ 68
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y +S+ +I F + S E+V + W ++ C +P +L+ K
Sbjct: 69 EDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFC-----QGVPIILVGCK 123
Query: 362 CDL 364
DL
Sbjct: 124 VDL 126
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL G GKT+ + K + V F+ + +++K VK +WD+ GQ
Sbjct: 3 ILXLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKN-----VKFNVWDVGGQ 54
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
D+ + R YY + G I + D +R + Q H + + + + L+ A+K
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAII---LIFANKQ 111
Query: 363 DLPD 366
DLPD
Sbjct: 112 DLPD 115
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKT+ + + + T+G F+ + + +K + +WD+ GQ
Sbjct: 23 ILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEYKN-----ISFTVWDVGGQ 74
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
D+ + R Y+QN+ G I + D +R + VV+ + +L D L+ A+K
Sbjct: 75 DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 131
Query: 363 DLPD 366
DLP+
Sbjct: 132 DLPN 135
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKT+ + + + T+G F+ + + +K + +WD+ GQ
Sbjct: 168 ILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEYKN-----ISFTVWDVGGQ 219
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
D+ + R Y+QN+ G I + D +R E V + + +L D L+ A+K
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQ 276
Query: 363 DLPD 366
DLP+
Sbjct: 277 DLPN 280
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKT+ + K + V F+ + +++K VK +WD+ G
Sbjct: 5 ILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKN-----VKFNVWDVGGL 56
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL--AS 360
D+ + R YY + G I + D +R + Q H I+++ M ++L A+
Sbjct: 57 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR-----IINDREMRDAIILIFAN 111
Query: 361 KCDLPD 366
K DLPD
Sbjct: 112 KQDLPD 117
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKT+ + K + V F+ + +++K VK +WD+ G
Sbjct: 6 ILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKN-----VKFNVWDVGGL 57
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL--AS 360
D+ + R YY + G I + D +R + Q H I+++ M ++L A+
Sbjct: 58 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR-----IINDREMRDAIILIFAN 112
Query: 361 KCDLPD 366
K DLPD
Sbjct: 113 KQDLPD 118
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKT+ + K + V F+ + +++K VK +WD+ G
Sbjct: 16 ILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKN-----VKFNVWDVGGL 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL--AS 360
D+ + R YY + G I + D +R + Q H I+++ M ++L A+
Sbjct: 68 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR-----IINDREMRDAIILIFAN 122
Query: 361 KCDLPD 366
K DLPD
Sbjct: 123 KQDLPD 128
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKT+ + + + T+G F+ + + +K + +WD+ GQ
Sbjct: 19 ILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEYKN-----ISFTVWDVGGQ 70
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
D+ + R Y+QN+ G I + D +R E V + + +L D L+ A+K
Sbjct: 71 DKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQ 127
Query: 363 DLPD 366
DLP+
Sbjct: 128 DLPN 131
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKT+ + + + T+G F+ + + +K + +WD+ GQ
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEYKN-----ISFTVWDVGGQ 54
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
D+ + R Y+QN+ G I + D +R E V + + +L D L+ A+K
Sbjct: 55 DKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQ 111
Query: 363 DLPD 366
DLP+
Sbjct: 112 DLPN 115
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKT+ + + + T+G F+ + + +K + +WD+ GQ
Sbjct: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEYKN-----ISFTVWDVGGQ 71
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
D+ + R Y+QN+ G I + D +R E V + + +L D L+ A+K
Sbjct: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQ 128
Query: 363 DLPD 366
DLP+
Sbjct: 129 DLPN 132
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 92/193 (47%), Gaps = 19/193 (9%)
Query: 241 YPILITGDSTVGKTSYVQGFVQ-NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
Y +++ G+ VGK++ F + +D+ +G D + L + L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 300 AGQDRYI---CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
G++ ++ CM Q D +I++ +T+R SFE + + L ++ +P +
Sbjct: 67 KGENEWLHDHCM-----QVGDAYLIVYSITDRASFEKASELRIQLRRARQTED---IPII 118
Query: 357 LLASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
L+ +K DL R+V ++E A ++ +IE S+ ++ ++ L + I+ R+
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFD-XKFIETSA----AVQHNVKELFEGIVRQVRLR 173
Query: 416 EEAVERKSSIRLS 428
++ E K+ RL+
Sbjct: 174 RDSKE-KNERRLA 185
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKT+ ++ + + T G F+ K + + + KL +WDI GQ
Sbjct: 20 ILLLGLDNAGKTTLLKQLASED-ISHITPTQG--FNIKSVQSQGF-----KLNVWDIGGQ 71
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+ R Y++N+D I + D +RK FE Q +L + + +P L+ A+K
Sbjct: 72 RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ---ELTELLEEEKLSCVPVLIFANKQ 128
Query: 363 DL 364
DL
Sbjct: 129 DL 130
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKT+ ++ + + T G F+ K + + + KL +WDI GQ
Sbjct: 19 ILLLGLDNAGKTTLLKQLASED-ISHITPTQG--FNIKSVQSQGF-----KLNVWDIGGQ 70
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+ R Y++N+D I + D +RK FE Q +L + + +P L+ A+K
Sbjct: 71 RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ---ELTELLEEEKLSCVPVLIFANKQ 127
Query: 363 DL 364
DL
Sbjct: 128 DL 129
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSF---ESVVQWKHDLDSKCILD 348
+ +WD+ GQDR + R YY N++G I + D +R V+Q + D C
Sbjct: 61 ISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELC--- 117
Query: 349 NGAMLPCLLLASKCDLPD 366
N A L+ A+K DLP+
Sbjct: 118 NAAW---LVFANKQDLPE 132
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKT+ ++ + + T G F+ K + + + KL +WDI GQ
Sbjct: 7 ILLLGLDNAGKTTLLKQLASED-ISHITPTQG--FNIKSVQSQGF-----KLNVWDIGGQ 58
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+ R Y++N+D I + D +RK FE Q +L + + +P L+ A+K
Sbjct: 59 RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ---ELTELLEEEKLSCVPVLIFANKQ 115
Query: 363 DL 364
DL
Sbjct: 116 DL 117
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKTS + + + T+G F+ + + +K + +WD+ GQ
Sbjct: 20 ILMVGLDAAGKTSILYKLKLGEIVTTIP-TIG--FNVETVEYKN-----ISFTVWDVGGQ 71
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
D+ + R YYQN+ I + D +R + + + + +L D L+ A+K
Sbjct: 72 DKIRPLWRHYYQNTQAIIFVVDSNDR---DRIGEAREELMKMLNEDEMRNAILLVFANKH 128
Query: 363 DLPDRQVEINEI 374
DLP + + I+E+
Sbjct: 129 DLP-QAMSISEV 139
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKT+ + + + T+G F+ + + +K + +WD+ G
Sbjct: 5 ILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEYKN-----ISFTVWDVGGL 56
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
D+ + R Y+QN+ G I + D +R E V + + +L D L+ A+K
Sbjct: 57 DKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQ 113
Query: 363 DLPD 366
DLP+
Sbjct: 114 DLPN 117
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKT+ + + + T+G F+ + + +K + +WD+ GQ
Sbjct: 32 ILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEYKN-----ICFTVWDVGGQ 83
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
D+ + R Y+QN+ G I + D +R E V + +L D L+ A+K
Sbjct: 84 DKIRPLWRHYFQNTQGLIFVVDSNDR---ERVQESADELQKMLQEDELRDAVLLVFANKQ 140
Query: 363 DLPD 366
D+P+
Sbjct: 141 DMPN 144
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 66/140 (47%), Gaps = 7/140 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQ-NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
Y +++ G+ VGK++ F + +D+ +G D + L + L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
G++ ++ + Q D +I++ +T+R SFE + + L ++ +P +L+
Sbjct: 67 KGENEWLHDHXM--QVGDAYLIVYSITDRASFEKASELRIQLRRARQTED---IPIILVG 121
Query: 360 SKCDL-PDRQVEINEIEAVC 378
+K DL R+V ++E A
Sbjct: 122 NKSDLVRXREVSVSEGRAXA 141
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 13/141 (9%)
Query: 241 YPILITGDSTVGKTSYVQGFVQ-NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
Y +++ G+ VGK++ F + +D+ +G D + L + L +W+
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 300 AGQDRYI---CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
G++ ++ CM Q D +I++ +T+R SFE + + L ++ +P +
Sbjct: 98 KGENEWLHDHCM-----QVGDAYLIVYSITDRASFEKASELRIQLRRARQTED---IPII 149
Query: 357 LLASKCDLPD-RQVEINEIEA 376
L+ +K DL R+V ++E A
Sbjct: 150 LVGNKSDLVRCREVSVSEGRA 170
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 13/141 (9%)
Query: 241 YPILITGDSTVGKTSYVQGFVQ-NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
Y +++ G+ VGK++ F + +D+ +G D + L + L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 300 AGQDRYI---CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
G++ ++ CM Q D +I++ +T+R SFE + + L ++ +P +
Sbjct: 67 KGENEWLHDHCM-----QVGDAYLIVYSITDRASFEKASELRIQLRRARQTED---IPII 118
Query: 357 LLASKCDLPD-RQVEINEIEA 376
L+ +K DL R+V ++E A
Sbjct: 119 LVGNKSDLVRCREVSVSEGRA 139
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKT+ ++ + + T G F+ K + + + KL +WDI G
Sbjct: 7 ILLLGLDNAGKTTLLKQLASED-ISHITPTQG--FNIKSVQSQGF-----KLNVWDIGGL 58
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+ R Y++N+D I + D +RK FE Q +L + + +P L+ A+K
Sbjct: 59 RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ---ELTELLEEEKLSCVPVLIFANKQ 115
Query: 363 DL 364
DL
Sbjct: 116 DL 117
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ Y +++ GD VGKTS F + D ++ +G D + L+ V + W
Sbjct: 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ-LGEDVYERTLTVDGEDTTLVVVDTW 60
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
+ D+ Q +I++ + +R SFES + + L D+ +P +L
Sbjct: 61 EAEKLDKSWSQESC-LQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADH---VPIIL 116
Query: 358 LASKCDLPD-RQVEINEIEA 376
+ +K DL R+V + E A
Sbjct: 117 VGNKADLARCREVSVEEGRA 136
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 11/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
ILI G GKT+ + + + K T+G F+ + LS+K +KL +WD+ GQ
Sbjct: 21 ILILGLDGAGKTTILYRLQIGEVVTT-KPTIG--FNVETLSYKN-----LKLNVWDLGGQ 72
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
R YY ++ I + D T++ + + H + + L + A+ L+ A+K
Sbjct: 73 TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAAL---LVFANKQ 129
Query: 363 DLP 365
D P
Sbjct: 130 DQP 132
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
L P + ++I G GKT+ + F N+ + + T+G + ++++ ++
Sbjct: 14 LVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVINNTRF----- 67
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK 329
+WDI GQ+ YY N++ I++ D T+R+
Sbjct: 68 --LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 102
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 225 QIWDIYCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 284
++W ++C + ++I G GKT+ + F+ N+ + T+G + ++ +
Sbjct: 7 KLWSLFCN------QEHKVIIVGLDNAGKTTILYQFLMNEVVHT-SPTIGSNVEEIVVKN 59
Query: 285 KKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK 329
+ +WDI GQ+ YY N++ I++ D +R+
Sbjct: 60 THF-------LMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRE 97
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ++I G GKT+ + F N+ + + T+G + ++++ ++ +WDI
Sbjct: 23 HKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVINNTRF-------LMWDIG 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRK 329
GQ+ YY N++ I++ D T+R+
Sbjct: 75 GQESLRSSWNTYYTNTEFVIVVVDSTDRE 103
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ++I G GKT+ + F N+ + T+G + ++++ ++ +WDI
Sbjct: 17 HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVINNTRF-------LMWDIG 68
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRK 329
GQ+ YY N++ I++ D T+R+
Sbjct: 69 GQESLRSSWNTYYTNTEFVIVVVDSTDRE 97
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ++I G GKT+ + F N+ + T+G + ++++ ++ +WDI
Sbjct: 17 HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVINNTRF-------LMWDIG 68
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRK 329
GQ+ YY N++ I++ D T+R+
Sbjct: 69 GQESLRSSWNTYYTNTEFVIVVVDSTDRE 97
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Query: 243 ILITGDSTVGKTSYVQGFV-QNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
+L G GKT+ + N N T+G S +K+ + ++D++G
Sbjct: 24 VLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-------FSIEKFKSSSLSFTVFDMSG 76
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM----LPCLL 357
Q RY + YY+ I + D ++R +V K +LD+ +L++ + +P L
Sbjct: 77 QGRYRNLWEHYYKEGQAIIFVIDSSDRL---RMVVAKEELDT--LLNHPDIKHRRIPILF 131
Query: 358 LASKCDLPDRQVEINEIEAVC 378
A+K DL D + + +C
Sbjct: 132 FANKMDLRDAVTSVKVSQLLC 152
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
ILI G GKT+ + + + T+G F+ + +++K +K Q+WD+ GQ
Sbjct: 5 ILILGLDGAGKTTILYRLQVGEVVTTIP-TIG--FNVETVTYKN-----LKFQVWDLGGQ 56
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNR 328
R YY N+D I + D +R
Sbjct: 57 TSIRPYWRCYYSNTDAVIYVVDSCDR 82
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 26/114 (22%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFL-------DNYKNTVGVDFSTKLLSHKKYGGR 290
IP + + GD+ GK+S + F+ + + YK + VD T L+ ++ G
Sbjct: 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGA 64
Query: 291 P-VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDS 343
P K W +D I +F L + SF++V + L S
Sbjct: 65 PDAKFSGW------------------ADAVIFVFSLEDENSFQAVSRLHGQLSS 100
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFL-------DNYKNTVGVDFSTKLLSHKKYGGRPYG 161
L++ V+GD+ GK+S + F+ + + YK + VD T L+ ++ G P
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA 67
Query: 162 TFS 164
FS
Sbjct: 68 KFS 70
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLD--NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I G++ GKT+ +Q + K D TVG+D + + R + L +WD A
Sbjct: 3 LXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFA 62
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKS-FESVVQWKHDLDSKCILDNGAMLPCLLLA 359
G++ + + + ++DL+ ++ ++ W ++ ++ + P +L+
Sbjct: 63 GREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARA-----SSSPVILVG 117
Query: 360 SKCDLPDRQ 368
+ D+ D +
Sbjct: 118 THLDVSDEK 126
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 26/114 (22%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFL-------DNYKNTVGVDFSTKLLSHKKYGGR 290
IP + + GD+ GK+S + F+ + + YK + VD T L+ ++ G
Sbjct: 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGA 64
Query: 291 P-VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDS 343
P K W +D I +F L + SF++V + L S
Sbjct: 65 PDAKFSGW------------------ADAVIFVFSLEDENSFQAVSRLHGQLSS 100
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFL-------DNYKNTVGVDFSTKLLSHKKYGGRPYG 161
L++ V+GD+ GK+S + F+ + + YK + VD T L+ ++ G P
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA 67
Query: 162 TFS 164
FS
Sbjct: 68 KFS 70
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 12/137 (8%)
Query: 241 YPILITGDSTVGKTSYVQGF--VQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
+ +++ G+S VGK++ F +Q +N+ + +++ K+ V L ++D
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDT-YERRIMVDKE----EVTLIVYD 57
Query: 299 IAGQ-DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
I Q D + Q D +I+F +T+R+SF V + L + + LP +L
Sbjct: 58 IWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD---LPVIL 114
Query: 358 LASKCDLP-DRQVEINE 373
+ +K DL R+V + E
Sbjct: 115 VGNKSDLARSREVSLEE 131
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 57/129 (44%), Gaps = 8/129 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLD--NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I G++ GKT+ +Q + K D TVG+D + + R + L +WD A
Sbjct: 5 LXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFA 64
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTN-RKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
G++ + + + ++DL+ + ++ W ++ ++ + P +L+
Sbjct: 65 GREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARA-----SSSPVILVG 119
Query: 360 SKCDLPDRQ 368
+ D+ D +
Sbjct: 120 THLDVSDEK 128
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 30/146 (20%)
Query: 241 YPILITGDSTVGKTSYVQGF--VQNKFL-------DNYKNTVGVDFSTKLLSHKKYGGRP 291
+ +++ G+S VGK++ F +Q D Y+ + VD L
Sbjct: 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTL--------- 74
Query: 292 VKLQIW---DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD 348
V IW D G R C+ Q D +I+F +T+R+SF V + L +
Sbjct: 75 VVYDIWEQGDAGGWLRDHCL-----QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH 129
Query: 349 NGAMLPCLLLASKCDLP-DRQVEINE 373
+ LP +L+ +K DL R+V + E
Sbjct: 130 D---LPVILVGNKSDLARSREVSLEE 152
>pdb|2I5D|A Chain A, Crystal Structure Of Human Inosine Triphosphate
Pyrophosphatase
Length = 197
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 11/54 (20%)
Query: 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEI 374
I+F N K E VVQ IL G PC L+A K DLP+ Q E +EI
Sbjct: 13 IVFVTGNAKKLEEVVQ---------IL--GDKFPCTLVAQKIDLPEYQGEPDEI 55
>pdb|2CAR|A Chain A, Crystal Structure Of Human Inosine Triphosphatase
pdb|2CAR|B Chain B, Crystal Structure Of Human Inosine Triphosphatase
pdb|2J4E|A Chain A, The Itp Complex Of Human Inosine Triphosphatase
pdb|2J4E|B Chain B, The Itp Complex Of Human Inosine Triphosphatase
pdb|2J4E|C Chain C, The Itp Complex Of Human Inosine Triphosphatase
pdb|2J4E|D Chain D, The Itp Complex Of Human Inosine Triphosphatase
pdb|2J4E|E Chain E, The Itp Complex Of Human Inosine Triphosphatase
pdb|2J4E|F Chain F, The Itp Complex Of Human Inosine Triphosphatase
pdb|2J4E|G Chain G, The Itp Complex Of Human Inosine Triphosphatase
pdb|2J4E|H Chain H, The Itp Complex Of Human Inosine Triphosphatase
Length = 196
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 11/54 (20%)
Query: 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEI 374
I+F N K E VVQ IL G PC L+A K DLP+ Q E +EI
Sbjct: 12 IVFVTGNAKKLEEVVQ---------IL--GDKFPCTLVAQKIDLPEYQGEPDEI 54
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 12/137 (8%)
Query: 241 YPILITGDSTVGKTSYVQGF--VQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
+ +++ G+S VGK++ F +Q +N+ + +++ K+ V L ++D
Sbjct: 13 FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDT-YERRIMVDKE----EVTLIVYD 67
Query: 299 IAGQ-DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
I Q D + Q D +I+F +T+R+SF V + L + + LP +L
Sbjct: 68 IWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD---LPVIL 124
Query: 358 LASKCDLP-DRQVEINE 373
+ +K DL R+V + E
Sbjct: 125 VGNKSDLARSREVSLEE 141
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 6/133 (4%)
Query: 156 GGRPYGTFS-PIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 214
G GT S PI Y ++ + T F D+ KN K ++H
Sbjct: 1 GAMGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60
Query: 215 KKYGGRPVKLQIWDIYCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG 274
K+Y P+ + + C PI + Y ++ + T F D+ KN
Sbjct: 61 KRY--HPIYIGSGTVSC---PICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT 115
Query: 275 VDFSTKLLSHKKY 287
K ++HK+Y
Sbjct: 116 CPTCRKKINHKRY 128
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
ILI G GKT+ + + + T+G F+ + +++K +K Q+WD+ G
Sbjct: 7 ILILGLDGAGKTTILYRLQVGEVVTTIP-TIG--FNVETVTYKN-----LKFQVWDLGGL 58
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNR 328
R YY N+D I + D +R
Sbjct: 59 TSIRPYWRCYYSNTDAVIYVVDSCDR 84
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
ILI G GKT+ + + + T+G F+ + +++K +K Q+WD+ G
Sbjct: 10 ILILGLDGAGKTTILYRLQVGEVVTTIP-TIG--FNVETVTYKN-----LKFQVWDLGGL 61
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNR 328
R YY N+D I + D +R
Sbjct: 62 TSIRPYWRCYYSNTDAVIYVVDSCDR 87
>pdb|1BWY|A Chain A, Nmr Study Of Bovine Heart Fatty Acid Binding Protein
Length = 132
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 36/113 (31%)
Query: 128 FVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQTPSYLILITGDSTVGKTSYV 187
V +K D+Y ++GV F+T+ + + + P+ +I + GD+ + KT
Sbjct: 10 LVDSKNFDDYMKSLGVGFATRQVGN-------------MTKPTTIIEVNGDTVIIKTQ-- 54
Query: 188 QGFVQNKFLDNYKNT-----VGVDFSTKLLSHKKY-------GGRPVKLQIWD 228
+KNT +GV+F +K GG+ V +Q W+
Sbjct: 55 ---------STFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHVQKWN 98
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 79 PARELCKSNSPSPRASVIGFEPRPSDAETV-----LKILVIGDSTVGKTSYVQGFVQNKF 133
P E+ K + R E S E + +K+ +IGD GKTS ++ + F
Sbjct: 7 PPPEIVKQGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETF 66
Query: 134 LDNYKNTVGVDFSTK 148
T G++ TK
Sbjct: 67 DPKESQTHGLNVVTK 81
>pdb|1ZMX|A Chain A, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|B Chain B, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|G Chain G, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|H Chain H, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|E Chain E, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|F Chain F, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|C Chain C, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|D Chain D, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZM7|A Chain A, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase Mutant N64d In Complex With Dttp
pdb|1ZM7|B Chain B, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase Mutant N64d In Complex With Dttp
pdb|1ZM7|C Chain C, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase Mutant N64d In Complex With Dttp
pdb|1ZM7|D Chain D, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase Mutant N64d In Complex With Dttp
Length = 230
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 161 GTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKF--------LDNYKNTVGVDFSTKLL 212
GT T + +LI G+ GKT+Y+ F + K ++ ++N GVD +
Sbjct: 11 GTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVDLLELMY 70
Query: 213 SHKKYGGRPVKLQIWDIYCTLSPIQIPTYP 242
K P + Y TL+ +Q T P
Sbjct: 71 KDPKKWAMPFQ-----SYVTLTMLQSHTAP 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,338,978
Number of Sequences: 62578
Number of extensions: 554308
Number of successful extensions: 2531
Number of sequences better than 100.0: 341
Number of HSP's better than 100.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1366
Number of HSP's gapped (non-prelim): 896
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)