BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14768
(452 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R7A4|RAB7L_PONAB Ras-related protein Rab-7L1 OS=Pongo abelii GN=RAB7L1 PE=2 SV=1
Length = 203
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 114/169 (67%), Gaps = 2/169 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L Y V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDY--EIVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL V ++I+ + F W E S KE+ I ++M L+++++
Sbjct: 126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMM 174
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L Y V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDY--EIVRLQLWDI 64
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L Y
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDY 54
>sp|O14966|RAB7L_HUMAN Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB7L1 PE=1 SV=1
Length = 203
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 114/169 (67%), Gaps = 2/169 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L Y V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDY--EIVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L NG +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL V ++I+ + F W E S KE+ I ++M L+++++
Sbjct: 126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMM 174
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L Y V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDY--EIVRLQLWDI 64
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L Y
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDY 54
>sp|Q63481|RAB7L_RAT Ras-related protein Rab-7L1 OS=Rattus norvegicus GN=Rab7l1 PE=2
SV=1
Length = 204
Score = 158 bits (400), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 114/173 (65%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L +G +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K DL V ++I+ + F W E S KE+ I ++M LV++++ + R
Sbjct: 126 KSDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLVEKMMNNSR 178
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDI 64
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVL 49
>sp|Q91YQ1|RAB7L_MOUSE Ras-related protein Rab-7L1 OS=Mus musculus GN=Rab7l1 PE=2 SV=1
Length = 204
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 114/173 (65%), Gaps = 2/173 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDIA
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDIA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ M+R+YY+++ C+IMFD+TN +F + +WK DLDSK L +G +PCLLLA+
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLAN 125
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K DL V ++I+ + F W E S KE+ I ++M LV++++ + R
Sbjct: 126 KSDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLVEKMMNNSR 178
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +L+ GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L V+LQ+WDI
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDI 64
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+LV+GD+ VGKTS VQ + Q+ F +YK+TVGVDF+ K+L
Sbjct: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVL 49
>sp|Q13637|RAB32_HUMAN Ras-related protein Rab-32 OS=Homo sapiens GN=RAB32 PE=1 SV=3
Length = 225
Score = 154 bits (390), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 132/198 (66%), Gaps = 11/198 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 26 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 82
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +FE+V++WK DLDSK L NG+ +P +LLA
Sbjct: 83 AGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLA 142
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM---E 415
+KCD D ++++ C ++ F W E S+K+++ IE++ FLV++I+ + + E
Sbjct: 143 NKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILVNHQSFPNE 202
Query: 416 EEAVERKSSIRLSEETLR 433
E V++ I+L +ETLR
Sbjct: 203 ENDVDK---IKLDQETLR 217
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 26 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 82
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 23 EHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 68
>sp|Q06AU5|RAB32_PIG Ras-related protein Rab-32 OS=Sus scrofa GN=RAB32 PE=2 SV=1
Length = 226
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 130/197 (65%), Gaps = 6/197 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 28 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 84
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G +++FD++ FE+V++WK+DLDSK L NG+ +P +LLA
Sbjct: 85 AGQERFGNMTRVYYKEAVGALVVFDISRGSPFEAVLKWKNDLDSKVHLPNGSPIPAVLLA 144
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
+KCD D ++++ C ++ F W E S+K+++ I+++ FLV+ I+ + + +
Sbjct: 145 NKCDQKKDSGQNPSQMDQFCKEHGFTGWFETSAKDNINIDEAARFLVENILANHQ-SFPS 203
Query: 419 VERKSSIRLSEETLRDD 435
E I+L EET++ +
Sbjct: 204 EENDGRIKLDEETMKKE 220
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 21 PETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 70
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 28 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 84
>sp|Q9CZE3|RAB32_MOUSE Ras-related protein Rab-32 OS=Mus musculus GN=Rab32 PE=2 SV=3
Length = 223
Score = 145 bits (366), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 129/195 (66%), Gaps = 11/195 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 24 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 80
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ M+RVYY+ + G ++FD++ +F++V++WK+DLDSK L NG+ +P +LLA
Sbjct: 81 AGQERFGNMTRVYYKEALGAFVVFDISRSSTFDAVLKWKNDLDSKVHLPNGSPIPAVLLA 140
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR---ME 415
+KCD D ++++ C + F W E S+K+++ I+++ FLV+ ++ +++ E
Sbjct: 141 NKCDQKKDNSQSPSQMDQFCKDHGFTGWFETSAKDNINIDEATRFLVENMLANQQSFPSE 200
Query: 416 EEAVERKSSIRLSEE 430
E ++R I+L EE
Sbjct: 201 EIDLDR---IKLVEE 212
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
P E + K+LVIG+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+
Sbjct: 17 PETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN 66
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 229
+ +L+ G+ VGKTS ++ +V F +Y+ T+GVDF+ K+L+ + R V+LQ+WDI
Sbjct: 24 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 80
>sp|Q54QR3|RB32A_DICDI Ras-related protein Rab-32A OS=Dictyostelium discoideum GN=rab32A
PE=1 SV=1
Length = 219
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 116/183 (63%), Gaps = 5/183 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y IL+ GD GKTS ++ FV N F +YK+T+GVDF+ K+++ V+LQ+WDIA
Sbjct: 16 YKILVVGDIGTGKTSIIKRFVHNIFSMHYKSTIGVDFALKVINWDP--KTEVRLQLWDIA 73
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD-NGAMLPCLLLA 359
GQ+R+ M+RVYY+ + G +I FD+T +FE+V +WK D+DSK + +P +LLA
Sbjct: 74 GQERFGSMTRVYYKEAVGAMITFDVTRMSTFEAVAKWKADIDSKVTYGADEKPIPVVLLA 133
Query: 360 SKCDL-PDRQVEI-NEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
+KCDL D ++ N+++ C F+ W E S+KE++ IE + FLVD I+ + +
Sbjct: 134 NKCDLGKDAFIKTANDMDKYCKDNGFIGWFETSAKENMNIEKAARFLVDHILKNDVRRNQ 193
Query: 418 AVE 420
+E
Sbjct: 194 PIE 196
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
E + KILV+GD GKTS ++ FV N F +YK+T+GVDF+ K+++
Sbjct: 13 EYLYKILVVGDIGTGKTSIIKRFVHNIFSMHYKSTIGVDFALKVIN 58
>sp|Q8QZZ8|RAB38_MOUSE Ras-related protein Rab-38 OS=Mus musculus GN=Rab38 PE=1 SV=1
Length = 211
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 121/190 (63%), Gaps = 6/190 (3%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 TPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPE--TVVR 60
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG +
Sbjct: 61 LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPV 120
Query: 354 PCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
+LLA+KCD + V +N +++ C ++ F+ W E S+KE++ I+++ LV I+
Sbjct: 121 SVVLLANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA 179
Query: 411 SKRMEEEAVE 420
++ E++E
Sbjct: 180 NECDLLESIE 189
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 166 IQTPS----YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 221
+QTP Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 1 MQTPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDP--ETV 58
Query: 222 VKLQIWDI 229
V+LQ+WDI
Sbjct: 59 VRLQLWDI 66
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>sp|P57729|RAB38_HUMAN Ras-related protein Rab-38 OS=Homo sapiens GN=RAB38 PE=1 SV=1
Length = 211
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 121/190 (63%), Gaps = 6/190 (3%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPE--TVVR 60
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
LQ+WDIAGQ+R+ M+RVYY+ + G I+FD+T +FE+V +WK+DLDSK L NG +
Sbjct: 61 LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPV 120
Query: 354 PCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
+LLA+KCD + V +N +++ C ++ F+ W E S+KE++ I+++ LV I+
Sbjct: 121 SVVLLANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA 179
Query: 411 SKRMEEEAVE 420
++ E++E
Sbjct: 180 NECDLMESIE 189
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
+P + Y +L+ GD VGKTS ++ +V F +Y+ T+GVDF+ K+L V+
Sbjct: 3 APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPE--TVVR 60
Query: 224 LQIWDI 229
LQ+WDI
Sbjct: 61 LQLWDI 66
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + K+LVIGD VGKTS ++ +V F +Y+ T+GVDF+ K+L
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVL 51
>sp|Q55E31|RB32B_DICDI Ras-related protein Rab-32B OS=Dictyostelium discoideum GN=rab32B
PE=3 SV=1
Length = 260
Score = 135 bits (341), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 107/176 (60%), Gaps = 2/176 (1%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
+ I+ Y +L+ GD VGK+S ++ + F NYK T+GVDFS K + +K + V
Sbjct: 53 TDIEKHLYKVLLIGDYAVGKSSIIKRYCTGIFSPNYKLTIGVDFSVKDIEWEK--NKIVS 110
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
LQ+WDIAG +R+ M+RVYY+ + II+FDL+ +F++V +W+ D++SK +L N +
Sbjct: 111 LQLWDIAGHERFGTMTRVYYRYAIAAIIVFDLSRPSTFDAVTKWREDVNSKVVLANQEPI 170
Query: 354 PCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
P LLLA+K DL V+ ++ C + NF+ W S+ I ++M+FL I+
Sbjct: 171 PVLLLANKSDLSTSYVDSEMLDRFCKENNFIGWFATSASNDTNINEAMHFLTKEIL 226
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 223
+ I+ Y +L+ GD VGK+S ++ + F NYK T+GVDFS K + +K + V
Sbjct: 53 TDIEKHLYKVLLIGDYAVGKSSIIKRYCTGIFSPNYKLTIGVDFSVKDIEWEK--NKIVS 110
Query: 224 LQIWDI 229
LQ+WDI
Sbjct: 111 LQLWDI 116
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 154
+ K+L+IGD VGK+S ++ + F NYK T+GVDFS K + +K
Sbjct: 59 LYKVLLIGDYAVGKSSIIKRYCTGIFSPNYKLTIGVDFSVKDIEWEK 105
>sp|Q8MXQ2|RB32C_DICDI Ras-related protein Rab-32C OS=Dictyostelium discoideum GN=rab32C
PE=3 SV=2
Length = 224
Score = 122 bits (306), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 102/183 (55%), Gaps = 7/183 (3%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKTS +Q + N F YK T+GVDF K+L + G+ V LQ+WDIAGQ
Sbjct: 31 ILVVGKLACGKTSIIQRYCHNNFQPKYKPTIGVDFQQKVL---EIMGQKVLLQLWDIAGQ 87
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ M+RVY+QN+ G +I+FD T +F WK D+D C N LP +LLA+KC
Sbjct: 88 ERFGHMTRVYFQNAHGAVIVFDATRSGTFLGAKAWKDDIDY-CF--NNENLPTILLANKC 144
Query: 363 DLPDRQVEINE-IEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
DL E I C Q F + S+KE I +++ LV I+ S + +E++
Sbjct: 145 DLLTPPYTFPEDINTFCEQNRFNKYFYTSAKEDTGINEALEELVKIILESYQTQEQSTGF 204
Query: 422 KSS 424
K S
Sbjct: 205 KLS 207
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
IL+ G GKTS +Q + N F YK T+GVDF K+L + G+ V LQ+WDI
Sbjct: 31 ILVVGKLACGKTSIIQRYCHNNFQPKYKPTIGVDFQQKVL---EIMGQKVLLQLWDI 84
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
LKILV+G GKTS +Q + N F YK T+GVDF K+L
Sbjct: 29 LKILVVGKLACGKTSIIQRYCHNNFQPKYKPTIGVDFQQKVL 70
>sp|Q96DA2|RB39B_HUMAN Ras-related protein Rab-39B OS=Homo sapiens GN=RAB39B PE=1 SV=1
Length = 213
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 105/173 (60%), Gaps = 7/173 (4%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+ I + + +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +
Sbjct: 1 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRI 58
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
KLQIWD AGQ+R+ ++R YY+NS G +++FD+TNR+SF++V +W L+ +
Sbjct: 59 KLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEW---LEETKVHVQPYQ 115
Query: 353 LPCLLLASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFL 404
+ +L+ KCDL RQV +E E + Y M +IE S+++ + +E + L
Sbjct: 116 IVFVLVGHKCDLDTQRQVTRHEAEKLAAAYG-MKYIETSARDAINVEKAFTDL 167
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +KLQIWD
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRIKLQIWD 64
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+++VIGDSTVGK+ ++ F + +F TVGVDF ++L+
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLV 50
>sp|Q17QU4|RB39B_BOVIN Ras-related protein Rab-39B OS=Bos taurus GN=RAB39B PE=2 SV=1
Length = 213
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 105/173 (60%), Gaps = 7/173 (4%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+ I + + +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +
Sbjct: 1 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRI 58
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
KLQIWD AGQ+R+ ++R YY+NS G +++FD+TNR+SF++V +W L+ +
Sbjct: 59 KLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEW---LEETKVHVQPYQ 115
Query: 353 LPCLLLASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFL 404
+ +L+ KCDL RQV +E E + Y M +IE S+++ + +E + L
Sbjct: 116 IVFVLVGHKCDLDTQRQVTRHEAEKLAAAYG-MKYIETSARDAINVEKAFTDL 167
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +KLQIWD
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRIKLQIWD 64
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+++VIGDSTVGK+ ++ F + +F TVGVDF ++L+
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLV 50
>sp|Q8BHC1|RB39B_MOUSE Ras-related protein Rab-39B OS=Mus musculus GN=Rab39b PE=2 SV=1
Length = 213
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 105/173 (60%), Gaps = 7/173 (4%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
+ I + + +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +
Sbjct: 1 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRI 58
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
KLQIWD AGQ+R+ ++R YY+NS G +++FD+TNR+SF++V +W L+ +
Sbjct: 59 KLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEW---LEETKVHVQPYQ 115
Query: 353 LPCLLLASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFL 404
+ +L+ KCDL RQV +E E + Y M +IE S+++ + +E + L
Sbjct: 116 IVFVLVGHKCDLDTQRQVTRHEAEKLAAAYG-MKYIETSARDAINVEKAFTDL 167
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDSTVGK+ ++ F + +F TVGVDF ++L+ + G+ +KLQIWD
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP--GKRIKLQIWD 64
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+++VIGDSTVGK+ ++ F + +F TVGVDF ++L+
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLV 50
>sp|Q3ZC27|RAB19_BOVIN Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 PE=2 SV=1
Length = 217
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 112/213 (52%), Gaps = 14/213 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT VQ F +++ +NT+GVDF+ + L + G+ VK+Q+WD A
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRAL---EIDGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT R +FESV W H+++ A L +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKY----GAANLVIMLIGN 130
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL + R V + + +Y ++ +E S+KE I++ + ++ +
Sbjct: 131 KCDLWEKRHVLFEDACILAEKYGLLAVLETSAKESKNIDEVFVLMARELMARHSLPLYGE 190
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
S+ L + P + PA + C C
Sbjct: 191 GAPGSLPL------ESTPVLMAPAPREKNQCTC 217
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT VQ F +++ +NT+GVDF+ + L + G+ VK+Q+WD
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRAL---EIDGKKVKMQVWD 72
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGDS VGKT VQ F +++ +NT+GVDF+ + L
Sbjct: 17 LFKIILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRAL 59
>sp|Q32NQ0|RAB19_XENLA Ras-related protein Rab-19 OS=Xenopus laevis GN=rab19 PE=2 SV=1
Length = 213
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 109/201 (54%), Gaps = 9/201 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT V F F+DN +NT+GVDF+ + L+ G+ VK+Q+WD A
Sbjct: 16 FKIILIGDSNVGKTCVVHRFQSGIFMDNQQNTIGVDFTVRSLN---INGKKVKVQVWDTA 72
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ G II +D+T R+SFESV W ++ A L +L+ +
Sbjct: 73 GQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAGKY----GAANLMLMLMGN 128
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME-EEA 418
K DL + RQ+ E + ++ ++ +E S+KE +++ + +I
Sbjct: 129 KSDLAEKRQILFEEACTLAEKHGLLAVLETSAKESHNVDEVFLLMAKELIARNTFHYHNE 188
Query: 419 VERKSSIRLSEETLRDDQPKK 439
R S I S+ L +P K
Sbjct: 189 SPRNSFILDSKPVLAPPEPDK 209
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT V F F+DN +NT+GVDF+ + L+ G+ VK+Q+WD
Sbjct: 16 FKIILIGDSNVGKTCVVHRFQSGIFMDNQQNTIGVDFTVRSLN---INGKKVKVQVWD 70
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ KI++IGDS VGKT V F F+DN +NT+GVDF+ + L+
Sbjct: 15 LFKIILIGDSNVGKTCVVHRFQSGIFMDNQQNTIGVDFTVRSLN 58
>sp|A4D1S5|RAB19_HUMAN Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2
Length = 217
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 110/217 (50%), Gaps = 22/217 (10%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L G+ VK+Q+WD A
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLD---IDGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT R +FES+ W H+++ A + +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKY----GAANVVIMLIGN 130
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL + R V + + +Y ++ +E S+KE IE+ M +E +
Sbjct: 131 KCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVFVL----------MAKELI 180
Query: 420 ERKSSIRLSEETLR----DDQPKKLVPADKVSTYCWC 452
R S E L D P + T+C C
Sbjct: 181 ARNSLHLYGESALNGLPLDSSPVLMAQGPSEKTHCTC 217
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT VQ F + + +NT+GVDF+ + L G+ VK+Q+WD
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLD---IDGKKVKMQVWD 72
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGDS VGKT VQ F + + +NT+GVDF+ + L
Sbjct: 17 LFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSL 59
>sp|P16976|YPTM1_MAIZE GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2
Length = 208
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 122/201 (60%), Gaps = 11/201 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS+VGK+ ++ F + ++D+Y +T+GVDF + + + G+ VKLQIWD A
Sbjct: 9 FKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVE---GKTVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G II++D+T+ +SF +V QW ++D N ++ LL+ +
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYA---NDSVRK-LLVGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCDL + R V+ + +A + + ++E S+KE + +E++ + I SK + A+
Sbjct: 122 KCDLAENRAVDTSVAQAYAQEVG-IPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAAL 180
Query: 420 ERKSS--IRLSEETLRDDQPK 438
ERK S +++ ++ +Q K
Sbjct: 181 ERKPSNVVQMKGRPIQQEQQK 201
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 40/58 (68%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS+VGK+ ++ F + ++D+Y +T+GVDF + + + G+ VKLQIWD
Sbjct: 9 FKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVE---GKTVKLQIWD 63
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 31/41 (75%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS+VGK+ ++ F + ++D+Y +T+GVDF +
Sbjct: 8 LFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIR 48
>sp|Q3T0F5|RAB7A_BOVIN Ras-related protein Rab-7a OS=Bos taurus GN=RAB7A PE=2 SV=1
Length = 207
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLV 405
DL +RQV +A C+ N + + E S+KE + +E + +V
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIV 170
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>sp|Q28IZ3|RAB19_XENTR Ras-related protein Rab-19 OS=Xenopus tropicalis GN=rab19 PE=2 SV=1
Length = 213
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 110/201 (54%), Gaps = 9/201 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT V F F N +NT+GVDF+ + ++ G+ VK+Q+WD A
Sbjct: 16 FKIILIGDSNVGKTCVVHRFQSGVFAHNQQNTIGVDFTVRNMN---INGKKVKVQVWDTA 72
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ G II +D+T R+SFESV W ++ + A L +L+ +
Sbjct: 73 GQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAEKY----GAANLMMMLIGN 128
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K DL + RQ+ E + ++ ++ +E S+KE +++ + +I +
Sbjct: 129 KSDLAEKRQILFEEACTLAEKHGLLAVLETSAKESHNVDEVFLLMAKELIARNTFHYHSE 188
Query: 420 ERKSSIRL-SEETLRDDQPKK 439
++S L S+ L +P K
Sbjct: 189 SPRNSFMLDSKPVLAPPEPDK 209
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I++ GDS VGKT V F F N +NT+GVDF+ + ++ G+ VK+Q+WD
Sbjct: 16 FKIILIGDSNVGKTCVVHRFQSGVFAHNQQNTIGVDFTVRNMN---INGKKVKVQVWD 70
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ KI++IGDS VGKT V F F N +NT+GVDF+ +
Sbjct: 15 LFKIILIGDSNVGKTCVVHRFQSGVFAHNQQNTIGVDFTVR 55
>sp|Q5M7U5|RAB19_RAT Ras-related protein Rab-19 OS=Rattus norvegicus GN=Rab19 PE=2 SV=1
Length = 217
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 118/220 (53%), Gaps = 28/220 (12%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GDS VGKT VQ F + ++ +NT+GVDF+ + L + G+ VK+Q+WD A
Sbjct: 18 FKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSL---EIDGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT R +FESV W H+++ A L +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKY----GAANLVIMLIGN 130
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K DL + R V + + +Y ++ +E S+KE I++ + +I
Sbjct: 131 KSDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESRNIDEVFVLMAKELIA--------- 181
Query: 420 ERKSSIRLSEETLRDDQPK-------KLVPADKVSTYCWC 452
++S+ L E+ + P+ VP+++ T+C C
Sbjct: 182 --RNSLHLYGESAQQGLPQDSSPVLVAHVPSER--THCTC 217
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDS VGKT VQ F + ++ +NT+GVDF+ + L + G+ VK+Q+WD
Sbjct: 18 FKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSL---EIDGKKVKMQVWD 72
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ + + K+++IGDS VGKT VQ F + ++ +NT+GVDF+ + L
Sbjct: 13 NVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSL 59
>sp|P09527|RAB7A_RAT Ras-related protein Rab-7a OS=Rattus norvegicus GN=Rab7a PE=1 SV=2
Length = 207
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>sp|Q54P07|RB32D_DICDI Ras-related protein Rab-32D OS=Dictyostelium discoideum GN=rab32D
PE=3 SV=1
Length = 228
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 99/170 (58%), Gaps = 7/170 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV-KLQIWDIAG 301
+++ GD VGKTS + + +KF + YK+T+G DF LS Y + +Q+WD AG
Sbjct: 12 LILIGDVNVGKTSILHRLIFSKFTEEYKSTIGADF----LSKTFYQNDIITHIQLWDTAG 67
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA--MLPCLLLA 359
Q++Y C++ +++ SD I++FD++N SF ++ W SK I +G LP LLLA
Sbjct: 68 QEKYWCLTSAFWRTSDAVILVFDISNESSFRNLNFWYKQFKSKSINPDGTEKQLPILLLA 127
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+K D R V+ +EI C + + EVS+K + I++S+ LV+ II
Sbjct: 128 NKSDSLTRAVDQSEINQWCTDHKVNLYYEVSAKSSINIKESILKLVEVII 177
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
LK+++IGD VGKTS + + +KF + YK+T+G DF +K
Sbjct: 10 LKLILIGDVNVGKTSILHRLIFSKFTEEYKSTIGADFLSK 49
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 172 LILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV-KLQIWD 228
LILI GD VGKTS + + +KF + YK+T+G DF LS Y + +Q+WD
Sbjct: 12 LILI-GDVNVGKTSILHRLIFSKFTEEYKSTIGADF----LSKTFYQNDIITHIQLWD 64
>sp|Q86YS6|RAB43_HUMAN Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1
Length = 212
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 99/162 (61%), Gaps = 8/162 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWDTA 75
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D+T R SF SV W D+ G+ + LL+ +
Sbjct: 76 GQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA----GSNIVQLLIGN 131
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
K DL + R+V + E +++ Y+ + IE S+K+ +E++
Sbjct: 132 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 173
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWD 73
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K++++GD++VGKT VQ F F + +T+GVDF+ K L
Sbjct: 18 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTL 60
>sp|Q5R9Y4|RAB7A_PONAB Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7A PE=2 SV=1
Length = 207
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>sp|P18067|RAB7A_CANFA Ras-related protein Rab-7a OS=Canis familiaris GN=RAB7A PE=2 SV=1
Length = 207
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>sp|P51150|RAB7A_MOUSE Ras-related protein Rab-7a OS=Mus musculus GN=Rab7a PE=1 SV=2
Length = 207
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>sp|P51149|RAB7A_HUMAN Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7A PE=1 SV=1
Length = 207
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A C+ N + + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWD 63
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>sp|Q53B90|RAB43_RAT Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1
Length = 210
Score = 108 bits (271), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 101/170 (59%), Gaps = 8/170 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQ---GKRVKLQIWDTA 73
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D++ R +F SV W D+ G+ + LL+ +
Sbjct: 74 GQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYA----GSNIVQLLIGN 129
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
K DL D R+V + E +++ Y+ + IE S+K+ +E++ + +I
Sbjct: 130 KSDLADLREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATELI 179
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD++VGKT VQ F F +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQ---GKRVKLQIWD 71
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 100 PRPSDAET----VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P P D + + K++++GD++VGKT VQ F F +T+GVDF+ K L
Sbjct: 4 PGPGDQDEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTL 58
>sp|Q1RMR4|RAB15_BOVIN Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 PE=2 SV=1
Length = 212
Score = 108 bits (271), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 120/213 (56%), Gaps = 10/213 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + + G V++QIWD A
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI---EVDGIKVRIQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY +++ YY+ + G +++D+++ +S++ +++W D+D + +L+ +
Sbjct: 66 GQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA----PEGVQKILIGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D RQV + + + +Y M + E S+ +L I++S L + ++ + R E E +
Sbjct: 122 KADEEQKRQVGREQGQQLAREYG-MDFYETSACTNLNIKESFTRLTELVLQAHRKELEGL 180
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
+++ L+ L +D+ K PA+ T CWC
Sbjct: 181 RTRANHELALAELEEDEGKPEGPANSSKT-CWC 212
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + + G V++QIWD
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI---EVDGIKVRIQIWD 63
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ + ++L+IGDS VGKT + F N+F ++ +T+GVDF K +
Sbjct: 6 DVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI 50
>sp|Q8CG50|RAB43_MOUSE Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1
Length = 210
Score = 108 bits (271), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 101/170 (59%), Gaps = 8/170 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD++VGKT VQ F F +T+GVDF+ K L + G+ VKLQIWD A
Sbjct: 17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQ---GKRVKLQIWDTA 73
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++G I+ +D++ R +F SV W D+ G+ + LL+ +
Sbjct: 74 GQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYA----GSNIVQLLIGN 129
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
K DL D R+V + E +++ Y+ + IE S+K+ +E++ + +I
Sbjct: 130 KSDLADFREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATELI 179
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GD++VGKT VQ F F +T+GVDF+ K L + G+ VKLQIWD
Sbjct: 17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQ---GKRVKLQIWD 71
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 100 PRPSDAET----VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
P P D + + K++++GD++VGKT VQ F F +T+GVDF+ K L
Sbjct: 4 PGPGDQDEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTL 58
>sp|P62824|RAB3C_RAT Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1
Length = 227
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 112/194 (57%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 87
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L +
Sbjct: 88 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILAGN 143
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D R V + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 144 KCDMEDERVVSTERGQRLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 199
Query: 420 ERKSSIRLSEETLR 433
E +I ++++ R
Sbjct: 200 ETDPAITAAKQSTR 213
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 85
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 72
>sp|P62823|RAB3C_MOUSE Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1
Length = 227
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 112/194 (57%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 87
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L +
Sbjct: 88 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILAGN 143
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D R V + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 144 KCDMEDERVVSTERGQRLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 199
Query: 420 ERKSSIRLSEETLR 433
E +I ++++ R
Sbjct: 200 ETDPAITAAKQSTR 213
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 85
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 72
>sp|P35294|RAB19_MOUSE Ras-related protein Rab-19 OS=Mus musculus GN=Rab19 PE=2 SV=3
Length = 217
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 114/218 (52%), Gaps = 24/218 (11%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GDS VGKT VQ F + ++ +NT+GVDF+ + L + G+ VK+Q+WD A
Sbjct: 18 FKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSL---EIDGKKVKMQVWDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY+++ II +DLT R +FESV W H+++ A L +L+ +
Sbjct: 75 GQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKY----GAANLVIMLIGN 130
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K DL + R V + + ++ ++ +E S+KE I++ + +I
Sbjct: 131 KSDLWEKRHVLFEDACTLAEKHGLLAVLETSAKESRNIDEVFVLMAKELIA--------- 181
Query: 420 ERKSSIRLSEETL-----RDDQPKKLVPADKVSTYCWC 452
++S+ L E+ +D P + ST C C
Sbjct: 182 --RNSLHLYGESAQQGLSQDSSPVLVAQVPNESTRCTC 217
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ GDS VGKT VQ F + ++ +NT+GVDF+ + L + G+ VK+Q+WD
Sbjct: 18 FKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSL---EIDGKKVKMQVWD 72
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 100 PRPSD--AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
R SD + + K+++IGDS VGKT VQ F + ++ +NT+GVDF+ + L
Sbjct: 7 SRTSDENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSL 59
>sp|P11023|RAB3A_BOVIN Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3
Length = 220
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 101/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E + + E S+K+++ ++ + LVD +IC K E
Sbjct: 136 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEKMSE 189
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 77
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 13 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 64
>sp|P63012|RAB3A_RAT Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1
Length = 220
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 101/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E + + E S+K+++ ++ + LVD +IC K E
Sbjct: 136 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEKMSE 189
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 77
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 13 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 64
>sp|Q06AU3|RAB3A_PIG Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1
Length = 220
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 101/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E + + E S+K+++ ++ + LVD +IC K E
Sbjct: 136 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEKMSE 189
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 77
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 13 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 64
>sp|P63011|RAB3A_MOUSE Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1
Length = 220
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 101/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E + + E S+K+++ ++ + LVD +IC K E
Sbjct: 136 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEKMSE 189
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 77
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 13 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 64
>sp|Q4R4R9|RAB3A_MACFA Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2
SV=1
Length = 220
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 101/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E + + E S+K+++ ++ + LVD +IC K E
Sbjct: 136 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEKMSE 189
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 77
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 13 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 64
>sp|P20336|RAB3A_HUMAN Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1
Length = 220
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 101/175 (57%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD A
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 79
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + LL+ +
Sbjct: 80 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 135
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
KCD+ D +V +E + + E S+K+++ ++ + LVD +IC K E
Sbjct: 136 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEKMSE 189
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWD 77
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 13 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 64
>sp|O97572|RAB7A_RABIT Ras-related protein Rab-7a OS=Oryctolagus cuniculus GN=RAB7A PE=2
SV=1
Length = 207
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK---EVMVDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ +S +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLSVAFYRGADCCVLVFDVTAPNTFKTLDSWRLEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
DL +RQV +A + N + + E S+KE + +E +
Sbjct: 128 DLENRQVATKRAQAWSYSKNNIPYFETSAKEAINVEQAF 166
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK---EVMVDDRLVTMQIWD 63
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>sp|Q8K386|RAB15_MOUSE Ras-related protein Rab-15 OS=Mus musculus GN=Rab15 PE=1 SV=1
Length = 212
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 119/213 (55%), Gaps = 10/213 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + G V++QIWD A
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTID---VDGIKVRIQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY +++ YY+ + G +++D+++ +S++ +++W D+D + +L+ +
Sbjct: 66 GQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA----PEGVQKILIGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D RQV + + + +Y M + E S+ +L I++S L + ++ + R E + +
Sbjct: 122 KADEEQKRQVGREQGQQLAKEYG-MDFYETSACTNLNIKESFTRLTELVLQAHRKELDGL 180
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
++S L+ L +D+ K PA+ T CWC
Sbjct: 181 RTRASNELALAELEEDEGKPEGPANSSKT-CWC 212
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + G V++QIWD
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTID---VDGIKVRIQIWD 63
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ + ++L+IGDS VGKT + F N+F ++ +T+GVDF K +
Sbjct: 6 DVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI 50
>sp|P10949|RAB3C_BOVIN Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3
Length = 227
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 113/194 (58%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 87
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 88 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 143
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D +V E + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 144 KCDMEDERVISTERGQHLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 199
Query: 420 ERKSSIRLSEETLR 433
E +I +++ R
Sbjct: 200 ETDPAITAAKQNTR 213
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 85
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 72
>sp|Q96E17|RAB3C_HUMAN Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1
Length = 227
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 113/194 (58%), Gaps = 12/194 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD A
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWDTA 87
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + + DN + +L+ +
Sbjct: 88 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVGN 143
Query: 361 KCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
KCD+ D +V E + + Q F + E S+K+++ ++ + LVD IIC K E++
Sbjct: 144 KCDMEDERVISTERGQHLGEQLGF-EFFETSAKDNINVKQTFERLVD-IICDKM--SESL 199
Query: 420 ERKSSIRLSEETLR 433
E +I +++ R
Sbjct: 200 ETDPAITAAKQNTR 213
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + + +KLQIWD
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE---KRIKLQIWD 85
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 72
>sp|Q8BHD0|RB39A_MOUSE Ras-related protein Rab-39A OS=Mus musculus GN=Rab39a PE=2 SV=1
Length = 217
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 101/181 (55%), Gaps = 11/181 (6%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKN----TVGVDFSTKLLSHKKYG 288
+ I I + +++ GDSTVGK+ + F Q +F + TVGVDF ++LL +
Sbjct: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLHSPACDPTVGVDFFSRLLEIEP-- 58
Query: 289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD 348
G+ +KLQ+WD AGQ+R+ ++R YY+NS G ++FD+TNR+SFE V W L+ +
Sbjct: 59 GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDW---LEEAKMHV 115
Query: 349 NGAMLPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
+ LL+ KCDL RQV E E + M +IE S+K+ +E+S L
Sbjct: 116 QPFQIVFLLVGHKCDLASQRQVSREEAERLSTDCG-MKYIETSAKDATNVEESFTILTRD 174
Query: 408 I 408
I
Sbjct: 175 I 175
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYK----NTVGVDFSTKLLSHKKYGGRPVKLQI 226
+ +++ GDSTVGK+ + F Q +F + TVGVDF ++LL + G+ +KLQ+
Sbjct: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGLHSPACDPTVGVDFFSRLLEIEP--GKRIKLQL 66
Query: 227 WD 228
WD
Sbjct: 67 WD 68
Score = 38.9 bits (89), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYK----NTVGVDFSTKLL 150
+++VIGDSTVGK+ + F Q +F + TVGVDF ++LL
Sbjct: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGLHSPACDPTVGVDFFSRLL 54
>sp|Q14964|RB39A_HUMAN Ras-related protein Rab-39A OS=Homo sapiens GN=RAB39A PE=2 SV=2
Length = 217
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 100/181 (55%), Gaps = 11/181 (6%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYG 288
+ I I + +++ GDSTVGK+ + F Q +F TVGVDF ++LL +
Sbjct: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP-- 58
Query: 289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD 348
G+ +KLQ+WD AGQ+R+ ++R YY+NS G ++FD+TNR+SFE V W L+ +
Sbjct: 59 GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDW---LEEAKMYV 115
Query: 349 NGAMLPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
+ LL+ KCDL RQV E E + M +IE S+K+ +E+S L
Sbjct: 116 QPFRIVFLLVGHKCDLASQRQVTREEAEKLSADCG-MKYIETSAKDATNVEESFTILTRD 174
Query: 408 I 408
I
Sbjct: 175 I 175
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
+ +++ GDSTVGK+ + F Q +F TVGVDF ++LL + G+ +KLQ+
Sbjct: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP--GKRIKLQL 66
Query: 227 WD 228
WD
Sbjct: 67 WD 68
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLL 150
+++VIGDSTVGK+ + F Q +F TVGVDF ++LL
Sbjct: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLL 54
>sp|P35289|RAB15_RAT Ras-related protein Rab-15 OS=Rattus norvegicus GN=Rab15 PE=2 SV=1
Length = 212
Score = 105 bits (263), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 119/213 (55%), Gaps = 10/213 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + + G V++QIWD A
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI---EVDGIKVRIQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY +++ YY+ + G +++D+++ +S++ +++W D+D + +L+ +
Sbjct: 66 GQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA----PEGVQKILIGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K D RQV + + + +Y M + E S+ +L I++S L + ++ + R E + +
Sbjct: 122 KADEEQKRQVGREQGQQLAKEYG-MDFYETSACTNLNIKESFTRLTELVLQAHRKELDGL 180
Query: 420 ERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
+S L+ L +D+ K PA+ T CWC
Sbjct: 181 RTCASNELALAELEEDEGKTEGPANSSKT-CWC 212
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F N+F ++ +T+GVDF K + + G V++QIWD
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI---EVDGIKVRIQIWD 63
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ + ++L+IGDS VGKT + F N+F ++ +T+GVDF K +
Sbjct: 6 DVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI 50
>sp|Q9SRS5|RAA5B_ARATH Ras-related protein RABA5b OS=Arabidopsis thaliana GN=RABA5B PE=2
SV=1
Length = 217
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 101/170 (59%), Gaps = 9/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGK++ + F +++F N K T+GV+F T+L+ + G+ VK QIWD A
Sbjct: 13 FKIVLIGDSAVGKSNLLSRFSRDEFDTNSKATIGVEFQTQLVEIE---GKEVKAQIWDTA 69
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G +I++D+T +FESV +W +L++ C + +L+ +
Sbjct: 70 GQERFRAVTSAYYRGAFGALIVYDITRGDTFESVKRWLQELNTHC----DTAVAQMLVGN 125
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCDL D R V + E +A+ + ++E S+ + ++ + ++ I
Sbjct: 126 KCDLEDIRAVSVEEGKALAEEEGLF-FMETSALDATNVDKAFEIVIREIF 174
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD-- 228
+ I++ GDS VGK++ + F +++F N K T+GV+F T+L+ + G+ VK QIWD
Sbjct: 13 FKIVLIGDSAVGKSNLLSRFSRDEFDTNSKATIGVEFQTQLVEIE---GKEVKAQIWDTA 69
Query: 229 ----IYCTLSPIQIPTYPILITGDSTVGKT 254
S + LI D T G T
Sbjct: 70 GQERFRAVTSAYYRGAFGALIVYDITRGDT 99
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 33/45 (73%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
E + KI++IGDS VGK++ + F +++F N K T+GV+F T+L+
Sbjct: 10 EYLFKIVLIGDSAVGKSNLLSRFSRDEFDTNSKATIGVEFQTQLV 54
>sp|Q9DD03|RAB13_MOUSE Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=1 SV=1
Length = 202
Score = 105 bits (261), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 102/171 (59%), Gaps = 11/171 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F ++ F Y +T+G+DF + + + G+ +KLQ+WD A
Sbjct: 9 FKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIE---GKRIKLQVWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNG-AMLPCLLLA 359
GQ+R+ ++ YY+ + G I+++D+T+ KSFE++ W K I +N A + LLL
Sbjct: 66 GQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNW-----MKSIKENASAGVERLLLG 120
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+KCD+ RQV+ + E + ++ + + E S+K + ++++ + L I+
Sbjct: 121 NKCDMEAKRQVQREQAEKLAREHR-IRFFETSAKSSVNVDEAFSSLARDIL 170
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +L+ GDS VGKT + F ++ F Y +T+G+DF + + + G+ +KLQ+WD
Sbjct: 9 FKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIE---GKRIKLQVWD 63
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K+L+IGDS VGKT + F ++ F Y +T+G+DF +
Sbjct: 8 LFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIR 48
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 171,877,849
Number of Sequences: 539616
Number of extensions: 7513410
Number of successful extensions: 24979
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 193
Number of HSP's that attempted gapping in prelim test: 21380
Number of HSP's gapped (non-prelim): 2823
length of query: 452
length of database: 191,569,459
effective HSP length: 121
effective length of query: 331
effective length of database: 126,275,923
effective search space: 41797330513
effective search space used: 41797330513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)