Query psy14768
Match_columns 452
No_of_seqs 342 out of 2551
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 20:07:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14768.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14768hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1160 Predicted GTPases [Gen 100.0 1.5E-40 3.3E-45 331.7 16.9 293 109-414 4-356 (444)
2 KOG0084|consensus 100.0 7.8E-38 1.7E-42 278.4 17.3 199 237-452 6-205 (205)
3 KOG0092|consensus 100.0 1.5E-34 3.2E-39 256.5 16.2 170 239-416 4-174 (200)
4 KOG0394|consensus 100.0 1.8E-34 4E-39 253.3 13.6 173 239-414 8-183 (210)
5 KOG0078|consensus 100.0 1.2E-33 2.6E-38 255.3 18.7 170 237-414 9-179 (207)
6 KOG0080|consensus 100.0 4.3E-34 9.3E-39 245.1 14.7 172 238-416 9-181 (209)
7 KOG0094|consensus 100.0 3.8E-34 8.3E-39 253.7 14.1 167 240-413 22-189 (221)
8 KOG0098|consensus 100.0 1.4E-33 3.1E-38 248.1 15.6 171 238-416 4-175 (216)
9 KOG0087|consensus 100.0 6E-33 1.3E-37 249.5 17.0 173 237-417 11-184 (222)
10 PRK03003 GTP-binding protein D 100.0 1.6E-32 3.6E-37 287.1 18.0 292 109-413 39-386 (472)
11 KOG0079|consensus 100.0 1.4E-32 3E-37 232.7 13.1 167 240-415 8-175 (198)
12 TIGR03594 GTPase_EngA ribosome 100.0 7.4E-32 1.6E-36 279.7 18.0 291 110-413 1-348 (429)
13 KOG0093|consensus 100.0 1.1E-31 2.4E-36 227.0 14.4 167 240-414 21-188 (193)
14 KOG0091|consensus 100.0 9.5E-32 2.1E-36 231.3 11.5 205 239-452 7-213 (213)
15 KOG0095|consensus 100.0 2.3E-31 5E-36 225.6 13.5 201 240-451 7-210 (213)
16 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2.6E-30 5.7E-35 240.9 20.5 173 241-416 1-175 (201)
17 cd04120 Rab12 Rab12 subfamily. 100.0 7.5E-30 1.6E-34 237.8 20.2 165 242-413 2-167 (202)
18 PRK00093 GTP-binding protein D 100.0 2.5E-30 5.4E-35 268.8 18.7 292 109-413 2-348 (435)
19 PRK09518 bifunctional cytidyla 100.0 2.1E-30 4.5E-35 283.3 17.8 292 108-413 275-625 (712)
20 KOG0086|consensus 100.0 2.5E-30 5.4E-35 220.1 13.7 170 239-416 8-178 (214)
21 cd04121 Rab40 Rab40 subfamily. 100.0 6.1E-30 1.3E-34 236.1 16.7 165 239-412 5-170 (189)
22 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.5E-29 3.3E-34 240.0 19.2 164 239-411 12-190 (232)
23 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.9E-29 6.3E-34 230.3 17.0 163 239-410 4-181 (182)
24 KOG0088|consensus 100.0 3.1E-30 6.8E-35 220.7 8.4 169 238-414 11-180 (218)
25 cd04133 Rop_like Rop subfamily 100.0 5E-29 1.1E-33 227.5 16.7 160 241-409 2-173 (176)
26 cd04109 Rab28 Rab28 subfamily. 100.0 8.3E-29 1.8E-33 233.3 18.5 167 241-412 1-169 (215)
27 cd04111 Rab39 Rab39 subfamily. 100.0 1.2E-28 2.7E-33 231.5 19.2 206 240-451 2-211 (211)
28 cd04126 Rab20 Rab20 subfamily. 100.0 1.2E-28 2.6E-33 232.4 18.5 161 241-413 1-194 (220)
29 cd04131 Rnd Rnd subfamily. Th 100.0 1.1E-28 2.4E-33 225.7 17.0 160 241-409 2-176 (178)
30 cd04122 Rab14 Rab14 subfamily. 100.0 1.7E-28 3.6E-33 221.2 17.8 162 241-410 3-165 (166)
31 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.2E-28 4.9E-33 230.8 18.7 166 241-415 2-182 (222)
32 PLN03110 Rab GTPase; Provision 100.0 3.7E-28 8E-33 229.1 19.5 167 239-413 11-178 (216)
33 cd04144 Ras2 Ras2 subfamily. 100.0 3.6E-28 7.9E-33 224.4 17.9 167 242-414 1-168 (190)
34 cd04112 Rab26 Rab26 subfamily. 100.0 3.2E-28 6.9E-33 225.0 17.1 165 241-413 1-167 (191)
35 cd04125 RabA_like RabA-like su 100.0 9.2E-28 2E-32 221.1 20.0 162 241-410 1-163 (188)
36 cd01875 RhoG RhoG subfamily. 100.0 3.9E-28 8.5E-33 224.5 17.4 162 240-410 3-178 (191)
37 cd04132 Rho4_like Rho4-like su 100.0 7.3E-28 1.6E-32 221.3 18.6 165 241-413 1-171 (187)
38 cd01867 Rab8_Rab10_Rab13_like 100.0 6.9E-28 1.5E-32 217.5 17.8 163 240-410 3-166 (167)
39 cd04110 Rab35 Rab35 subfamily. 100.0 9.4E-28 2E-32 223.4 18.6 168 239-415 5-173 (199)
40 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 6.2E-28 1.3E-32 219.4 16.9 163 240-410 2-165 (172)
41 KOG0083|consensus 100.0 1.4E-28 3E-33 205.0 10.9 161 245-413 2-164 (192)
42 cd04116 Rab9 Rab9 subfamily. 100.0 1E-27 2.2E-32 216.7 17.2 166 239-407 4-169 (170)
43 KOG0081|consensus 100.0 4E-28 8.7E-33 208.0 13.2 170 240-413 9-185 (219)
44 cd04127 Rab27A Rab27a subfamil 100.0 1.3E-27 2.9E-32 218.0 17.6 167 240-410 4-178 (180)
45 cd01865 Rab3 Rab3 subfamily. 100.0 1.6E-27 3.5E-32 214.7 17.9 161 241-409 2-163 (165)
46 cd04117 Rab15 Rab15 subfamily. 100.0 1.3E-27 2.8E-32 214.7 17.1 159 241-407 1-160 (161)
47 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.1E-27 2.4E-32 218.5 16.5 159 241-408 2-174 (175)
48 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.9E-27 4.1E-32 214.1 17.7 163 240-410 2-165 (166)
49 cd04119 RJL RJL (RabJ-Like) su 100.0 1.7E-27 3.7E-32 213.6 17.3 165 241-409 1-167 (168)
50 cd04136 Rap_like Rap-like subf 100.0 1.6E-27 3.4E-32 213.4 16.1 160 241-408 2-162 (163)
51 cd04118 Rab24 Rab24 subfamily. 100.0 5.5E-27 1.2E-31 216.7 19.8 163 241-412 1-169 (193)
52 cd04128 Spg1 Spg1p. Spg1p (se 100.0 2E-27 4.4E-32 218.1 16.7 163 241-412 1-169 (182)
53 PTZ00369 Ras-like protein; Pro 100.0 3.1E-27 6.7E-32 218.0 17.6 165 239-411 4-169 (189)
54 PLN03071 GTP-binding nuclear p 100.0 2.9E-27 6.3E-32 223.5 17.2 165 238-412 11-175 (219)
55 PF00071 Ras: Ras family; Int 99.9 4.2E-27 9.1E-32 210.7 17.1 160 242-409 1-161 (162)
56 cd01868 Rab11_like Rab11-like. 99.9 5.2E-27 1.1E-31 210.9 17.4 161 240-408 3-164 (165)
57 cd04175 Rap1 Rap1 subgroup. T 99.9 4.2E-27 9E-32 211.4 16.6 162 240-409 1-163 (164)
58 cd01864 Rab19 Rab19 subfamily. 99.9 6E-27 1.3E-31 210.8 17.4 161 240-407 3-164 (165)
59 KOG0097|consensus 99.9 2.6E-27 5.7E-32 199.2 13.9 167 240-414 11-178 (215)
60 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 1.1E-26 2.4E-31 210.8 17.9 162 242-410 2-166 (170)
61 cd01866 Rab2 Rab2 subfamily. 99.9 1.3E-26 2.9E-31 209.5 18.2 163 240-410 4-167 (168)
62 cd01871 Rac1_like Rac1-like su 99.9 6.8E-27 1.5E-31 213.1 16.4 158 241-407 2-173 (174)
63 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1E-26 2.2E-31 207.4 17.0 160 241-408 2-161 (162)
64 cd04113 Rab4 Rab4 subfamily. 99.9 9.1E-27 2E-31 208.5 16.7 159 241-407 1-160 (161)
65 PLN03108 Rab family protein; P 99.9 2.6E-26 5.6E-31 215.6 19.6 164 240-411 6-170 (210)
66 cd04176 Rap2 Rap2 subgroup. T 99.9 1.1E-26 2.3E-31 208.5 16.0 161 240-408 1-162 (163)
67 smart00176 RAN Ran (Ras-relate 99.9 1.4E-26 3E-31 215.5 16.9 158 246-413 1-158 (200)
68 cd04106 Rab23_lke Rab23-like s 99.9 2.1E-26 4.5E-31 206.0 17.1 158 241-407 1-161 (162)
69 cd04134 Rho3 Rho3 subfamily. 99.9 1.2E-26 2.7E-31 214.1 16.1 160 242-410 2-175 (189)
70 cd00877 Ran Ran (Ras-related n 99.9 2E-26 4.4E-31 208.2 17.0 161 241-411 1-161 (166)
71 cd04124 RabL2 RabL2 subfamily. 99.9 3.2E-26 6.8E-31 205.6 17.5 161 241-412 1-161 (161)
72 smart00173 RAS Ras subfamily o 99.9 3.6E-26 7.7E-31 205.1 16.6 161 241-409 1-162 (164)
73 cd04142 RRP22 RRP22 subfamily. 99.9 3E-26 6.5E-31 213.2 16.2 169 241-414 1-179 (198)
74 cd04145 M_R_Ras_like M-Ras/R-R 99.9 5.9E-26 1.3E-30 203.4 17.2 161 240-408 2-163 (164)
75 cd04115 Rab33B_Rab33A Rab33B/R 99.9 5.7E-26 1.2E-30 205.7 17.2 162 240-408 2-168 (170)
76 smart00174 RHO Rho (Ras homolo 99.9 4E-26 8.7E-31 206.9 16.1 159 243-410 1-173 (174)
77 smart00175 RAB Rab subfamily o 99.9 9.4E-26 2E-30 201.9 17.8 162 241-410 1-163 (164)
78 PLN03118 Rab family protein; P 99.9 1.2E-25 2.6E-30 211.1 19.3 166 239-412 13-180 (211)
79 cd01861 Rab6 Rab6 subfamily. 99.9 7.6E-26 1.7E-30 202.2 16.9 159 241-407 1-160 (161)
80 cd04140 ARHI_like ARHI subfami 99.9 7.5E-26 1.6E-30 203.8 16.4 160 241-406 2-162 (165)
81 cd01862 Rab7 Rab7 subfamily. 99.9 1.6E-25 3.5E-30 202.1 18.2 168 241-411 1-169 (172)
82 cd01873 RhoBTB RhoBTB subfamil 99.9 6.7E-26 1.5E-30 210.2 15.5 157 240-407 2-194 (195)
83 cd01860 Rab5_related Rab5-rela 99.9 1.6E-25 3.6E-30 200.4 17.5 161 240-408 1-162 (163)
84 KOG0395|consensus 99.9 2.2E-25 4.8E-30 206.2 18.6 167 240-414 3-170 (196)
85 cd01892 Miro2 Miro2 subfamily. 99.9 5.1E-26 1.1E-30 206.2 13.9 162 239-409 3-166 (169)
86 cd04101 RabL4 RabL4 (Rab-like4 99.9 1.8E-25 3.9E-30 200.5 17.1 160 241-408 1-163 (164)
87 cd04143 Rhes_like Rhes_like su 99.9 1.5E-25 3.2E-30 215.3 17.3 165 241-409 1-171 (247)
88 cd04177 RSR1 RSR1 subgroup. R 99.9 2.8E-25 6.2E-30 200.6 17.2 164 240-410 1-165 (168)
89 cd04130 Wrch_1 Wrch-1 subfamil 99.9 2.1E-25 4.5E-30 202.6 16.3 157 241-406 1-171 (173)
90 cd01863 Rab18 Rab18 subfamily. 99.9 2.8E-25 6.1E-30 198.7 16.9 160 241-407 1-160 (161)
91 cd04103 Centaurin_gamma Centau 99.9 1.7E-25 3.8E-30 200.6 15.0 154 241-407 1-157 (158)
92 cd04123 Rab21 Rab21 subfamily. 99.9 4.6E-25 1E-29 196.6 17.2 160 241-408 1-161 (162)
93 cd04135 Tc10 TC10 subfamily. 99.9 4.9E-25 1.1E-29 199.8 16.6 159 241-408 1-173 (174)
94 cd04146 RERG_RasL11_like RERG/ 99.9 6.1E-25 1.3E-29 197.7 15.3 161 242-409 1-164 (165)
95 cd04148 RGK RGK subfamily. Th 99.9 1E-24 2.3E-29 206.3 16.8 164 241-413 1-167 (221)
96 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 1.6E-24 3.4E-29 199.0 16.7 172 240-418 3-179 (183)
97 cd04114 Rab30 Rab30 subfamily. 99.9 3.3E-24 7.2E-29 193.2 17.3 161 240-408 7-168 (169)
98 KOG0393|consensus 99.9 1.5E-24 3.3E-29 197.0 14.9 165 240-413 4-183 (198)
99 cd01870 RhoA_like RhoA-like su 99.9 2.4E-24 5.3E-29 195.4 16.4 159 241-408 2-174 (175)
100 cd04147 Ras_dva Ras-dva subfam 99.9 5.3E-24 1.1E-28 198.0 18.0 167 242-416 1-170 (198)
101 cd04139 RalA_RalB RalA/RalB su 99.9 7.5E-24 1.6E-28 189.3 17.1 161 241-409 1-162 (164)
102 cd00154 Rab Rab family. Rab G 99.9 7.3E-24 1.6E-28 187.2 16.5 157 241-405 1-158 (159)
103 cd04149 Arf6 Arf6 subfamily. 99.9 4E-24 8.6E-29 193.6 14.5 156 239-406 8-167 (168)
104 cd04129 Rho2 Rho2 subfamily. 99.9 8.6E-24 1.9E-28 194.7 16.2 166 241-415 2-179 (187)
105 PTZ00099 rab6; Provisional 99.9 3.3E-23 7.1E-28 189.1 19.0 173 263-452 3-176 (176)
106 cd04158 ARD1 ARD1 subfamily. 99.9 1.2E-23 2.6E-28 190.4 15.3 158 242-411 1-163 (169)
107 PLN00223 ADP-ribosylation fact 99.9 1.5E-23 3.3E-28 192.2 15.7 157 239-410 16-179 (181)
108 cd04150 Arf1_5_like Arf1-Arf5- 99.9 7.5E-24 1.6E-28 190.0 13.1 155 241-406 1-158 (159)
109 cd00876 Ras Ras family. The R 99.9 3.2E-23 7E-28 184.3 16.2 158 242-407 1-159 (160)
110 smart00177 ARF ARF-like small 99.9 8.4E-24 1.8E-28 192.8 11.4 159 239-409 12-174 (175)
111 cd04137 RheB Rheb (Ras Homolog 99.9 5.3E-23 1.1E-27 187.7 16.6 163 241-411 2-165 (180)
112 PTZ00132 GTP-binding nuclear p 99.9 9.3E-23 2E-27 192.0 18.2 166 238-413 7-172 (215)
113 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 8E-24 1.7E-28 190.8 10.4 152 242-406 1-163 (164)
114 cd00157 Rho Rho (Ras homology) 99.9 5.5E-23 1.2E-27 185.3 15.7 157 241-406 1-170 (171)
115 cd01893 Miro1 Miro1 subfamily. 99.9 6.2E-23 1.3E-27 185.1 15.3 160 241-410 1-165 (166)
116 PTZ00133 ADP-ribosylation fact 99.9 2.2E-23 4.8E-28 191.3 11.8 160 240-411 17-180 (182)
117 KOG4252|consensus 99.9 1.8E-24 4E-29 189.0 3.0 173 238-419 18-191 (246)
118 cd04154 Arl2 Arl2 subfamily. 99.9 1E-22 2.2E-27 184.9 14.4 157 238-406 12-172 (173)
119 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.6E-22 3.4E-27 188.4 14.8 154 241-395 1-176 (202)
120 cd04157 Arl6 Arl6 subfamily. 99.9 3.1E-22 6.8E-27 178.7 14.1 156 242-406 1-161 (162)
121 cd04156 ARLTS1 ARLTS1 subfamil 99.9 4E-22 8.6E-27 178.0 13.8 154 242-406 1-159 (160)
122 cd04161 Arl2l1_Arl13_like Arl2 99.9 2E-22 4.4E-27 182.2 11.3 153 242-406 1-166 (167)
123 PLN00023 GTP-binding protein; 99.9 7E-22 1.5E-26 193.3 15.5 148 239-386 20-192 (334)
124 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 6.7E-22 1.5E-26 179.9 13.4 154 240-406 15-173 (174)
125 cd04151 Arl1 Arl1 subfamily. 99.9 1.3E-21 2.8E-26 174.8 14.9 153 242-406 1-157 (158)
126 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1.4E-21 2.9E-26 175.8 13.7 154 242-406 1-166 (167)
127 cd00878 Arf_Arl Arf (ADP-ribos 99.9 3.8E-21 8.2E-26 171.4 15.0 153 242-406 1-157 (158)
128 cd00879 Sar1 Sar1 subfamily. 99.9 2.5E-21 5.5E-26 178.3 14.2 157 239-407 18-189 (190)
129 cd01890 LepA LepA subfamily. 99.9 5E-21 1.1E-25 174.2 14.8 158 242-408 2-176 (179)
130 smart00178 SAR Sar1p-like memb 99.9 9.1E-21 2E-25 174.2 14.0 157 239-407 16-183 (184)
131 cd04159 Arl10_like Arl10-like 99.8 1.5E-20 3.3E-25 166.1 14.3 154 242-406 1-158 (159)
132 TIGR02528 EutP ethanolamine ut 99.8 3.4E-21 7.3E-26 168.9 10.0 135 242-405 2-141 (142)
133 cd04171 SelB SelB subfamily. 99.8 2.5E-20 5.4E-25 166.5 14.1 154 242-406 2-163 (164)
134 cd01898 Obg Obg subfamily. Th 99.8 1.8E-20 3.8E-25 168.9 13.1 160 242-407 2-169 (170)
135 PRK12299 obgE GTPase CgtA; Rev 99.8 5.6E-20 1.2E-24 183.6 15.8 166 240-412 158-331 (335)
136 cd01897 NOG NOG1 is a nucleola 99.8 4.5E-20 9.7E-25 166.1 13.4 154 242-408 2-167 (168)
137 TIGR00231 small_GTP small GTP- 99.8 1.3E-19 2.8E-24 159.2 14.8 158 240-405 1-160 (161)
138 cd04155 Arl3 Arl3 subfamily. 99.8 1.2E-19 2.7E-24 164.1 13.4 153 239-406 13-172 (173)
139 COG1100 GTPase SAR1 and relate 99.8 2.9E-19 6.2E-24 168.2 16.5 167 241-415 6-191 (219)
140 cd01878 HflX HflX subfamily. 99.8 1.6E-19 3.6E-24 168.3 13.1 155 239-407 40-203 (204)
141 PF00025 Arf: ADP-ribosylation 99.8 3.8E-19 8.2E-24 162.2 15.1 159 238-408 12-175 (175)
142 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 3.8E-19 8.3E-24 159.7 13.6 157 242-409 2-166 (168)
143 KOG0073|consensus 99.8 7.3E-19 1.6E-23 152.3 14.3 159 239-410 15-179 (185)
144 cd01879 FeoB Ferrous iron tran 99.8 3.1E-19 6.7E-24 158.5 12.0 148 245-408 1-156 (158)
145 TIGR03156 GTP_HflX GTP-binding 99.8 4.7E-19 1E-23 178.3 14.5 154 239-407 188-350 (351)
146 TIGR00436 era GTP-binding prot 99.8 5.4E-19 1.2E-23 172.3 13.4 155 242-410 2-165 (270)
147 TIGR02729 Obg_CgtA Obg family 99.8 1.5E-18 3.2E-23 173.2 15.2 162 240-408 157-328 (329)
148 cd01891 TypA_BipA TypA (tyrosi 99.8 4.8E-19 1E-23 164.1 10.6 147 242-400 4-173 (194)
149 KOG0070|consensus 99.8 2.3E-18 4.9E-23 153.1 13.6 161 238-411 15-180 (181)
150 PRK04213 GTP-binding protein; 99.8 4.9E-19 1.1E-23 164.7 9.6 155 239-412 8-195 (201)
151 cd01889 SelB_euk SelB subfamil 99.8 1.3E-18 2.8E-23 160.9 11.9 161 241-409 1-186 (192)
152 PF02421 FeoB_N: Ferrous iron 99.8 4.5E-19 9.7E-24 157.3 8.5 148 241-404 1-156 (156)
153 TIGR00450 mnmE_trmE_thdF tRNA 99.8 2.5E-18 5.5E-23 177.8 14.9 153 238-411 201-362 (442)
154 PRK03003 GTP-binding protein D 99.8 3.2E-18 7E-23 179.4 14.0 154 240-410 38-200 (472)
155 KOG4423|consensus 99.8 1.9E-20 4E-25 165.2 -2.7 170 240-412 25-197 (229)
156 cd00881 GTP_translation_factor 99.8 4.3E-18 9.3E-23 155.6 12.7 154 242-408 1-186 (189)
157 cd00882 Ras_like_GTPase Ras-li 99.8 9.7E-18 2.1E-22 145.4 14.1 153 245-405 1-156 (157)
158 cd01881 Obg_like The Obg-like 99.8 2.4E-18 5.1E-23 155.6 10.3 158 245-407 1-175 (176)
159 PRK11058 GTPase HflX; Provisio 99.8 6.8E-18 1.5E-22 173.7 15.0 158 241-410 198-363 (426)
160 KOG0075|consensus 99.8 4.9E-18 1.1E-22 144.4 11.5 156 240-409 20-182 (186)
161 cd01894 EngA1 EngA1 subfamily. 99.8 3.8E-18 8.3E-23 151.0 11.4 147 244-407 1-156 (157)
162 PRK15467 ethanolamine utilizat 99.8 2.9E-18 6.2E-23 153.8 10.4 141 242-411 3-149 (158)
163 PRK15494 era GTPase Era; Provi 99.8 6.9E-18 1.5E-22 169.4 14.1 157 239-411 51-218 (339)
164 TIGR01393 lepA GTP-binding pro 99.8 8.6E-18 1.9E-22 179.8 14.5 159 242-409 5-180 (595)
165 cd01895 EngA2 EngA2 subfamily. 99.7 1.7E-17 3.6E-22 149.0 14.0 155 240-407 2-173 (174)
166 PRK05291 trmE tRNA modificatio 99.7 6E-18 1.3E-22 175.9 11.7 149 239-410 214-371 (449)
167 PRK12296 obgE GTPase CgtA; Rev 99.7 2.2E-17 4.7E-22 171.2 15.1 168 240-413 159-344 (500)
168 PRK12298 obgE GTPase CgtA; Rev 99.7 2E-17 4.3E-22 168.5 14.0 167 241-413 160-337 (390)
169 TIGR00487 IF-2 translation ini 99.7 2.8E-17 6.1E-22 175.0 15.3 155 238-406 85-247 (587)
170 PRK12297 obgE GTPase CgtA; Rev 99.7 4.8E-17 1E-21 166.6 16.1 163 241-413 159-331 (424)
171 KOG1673|consensus 99.7 2.7E-17 5.8E-22 141.1 11.4 165 239-412 19-189 (205)
172 cd04164 trmE TrmE (MnmE, ThdF, 99.7 3.2E-17 6.9E-22 144.9 12.5 146 241-408 2-156 (157)
173 COG1160 Predicted GTPases [Gen 99.7 1.7E-17 3.8E-22 166.6 11.6 152 241-409 4-165 (444)
174 PRK05306 infB translation init 99.7 2.4E-16 5.1E-21 171.9 20.9 156 237-407 287-450 (787)
175 COG0486 ThdF Predicted GTPase 99.7 2.8E-17 6E-22 165.5 12.2 154 239-411 216-378 (454)
176 TIGR03594 GTPase_EngA ribosome 99.7 5E-17 1.1E-21 168.7 14.6 152 242-410 1-161 (429)
177 PF08477 Miro: Miro-like prote 99.7 1.6E-17 3.6E-22 140.9 8.7 117 242-363 1-119 (119)
178 PRK00093 GTP-binding protein D 99.7 4.4E-17 9.5E-22 169.5 13.6 149 241-406 2-159 (435)
179 KOG0096|consensus 99.7 1.4E-17 3E-22 147.7 8.2 167 238-414 8-174 (216)
180 KOG3883|consensus 99.7 5.5E-17 1.2E-21 138.9 11.3 167 240-413 9-179 (198)
181 TIGR03598 GTPase_YsxC ribosome 99.7 5.8E-17 1.3E-21 148.1 11.3 147 238-398 16-179 (179)
182 CHL00189 infB translation init 99.7 9.7E-17 2.1E-21 173.4 14.6 160 238-408 242-409 (742)
183 PRK00454 engB GTP-binding prot 99.7 1.5E-16 3.2E-21 147.0 13.9 156 239-409 23-194 (196)
184 TIGR00475 selB selenocysteine- 99.7 1.1E-16 2.4E-21 171.1 14.5 158 241-411 1-168 (581)
185 COG1159 Era GTPase [General fu 99.7 9.2E-17 2E-21 153.4 11.9 161 240-413 6-176 (298)
186 PRK00089 era GTPase Era; Revie 99.7 2E-16 4.3E-21 156.0 13.7 158 240-410 5-172 (292)
187 PRK09518 bifunctional cytidyla 99.7 2.3E-16 4.9E-21 173.1 14.6 154 240-410 275-437 (712)
188 TIGR00437 feoB ferrous iron tr 99.7 1.3E-16 2.9E-21 170.7 12.3 146 247-408 1-154 (591)
189 PF00009 GTP_EFTU: Elongation 99.7 1.4E-16 3E-21 146.9 10.5 158 240-408 3-186 (188)
190 cd04163 Era Era subfamily. Er 99.7 3.9E-16 8.4E-21 138.7 12.8 155 240-407 3-167 (168)
191 TIGR00491 aIF-2 translation in 99.7 4.6E-16 9.9E-21 165.6 14.0 162 240-409 4-216 (590)
192 PRK05433 GTP-binding protein L 99.7 4.9E-16 1.1E-20 166.5 14.1 161 241-410 8-185 (600)
193 cd04166 CysN_ATPS CysN_ATPS su 99.7 2.3E-16 5E-21 147.9 9.6 147 242-400 1-185 (208)
194 cd01888 eIF2_gamma eIF2-gamma 99.7 4.9E-16 1.1E-20 145.1 11.4 110 292-408 83-198 (203)
195 KOG0071|consensus 99.6 8.6E-16 1.9E-20 129.8 10.6 157 239-408 16-177 (180)
196 cd00880 Era_like Era (E. coli 99.6 1.6E-15 3.6E-20 133.0 11.3 151 245-407 1-162 (163)
197 cd04105 SR_beta Signal recogni 99.6 2.3E-15 5.1E-20 140.5 12.7 120 242-366 2-123 (203)
198 cd01884 EF_Tu EF-Tu subfamily. 99.6 2.9E-15 6.2E-20 138.9 13.0 145 240-397 2-171 (195)
199 PRK12317 elongation factor 1-a 99.6 1E-15 2.2E-20 158.7 11.0 153 238-402 4-198 (425)
200 cd01896 DRG The developmentall 99.6 2.8E-15 6.1E-20 142.9 12.6 156 242-409 2-226 (233)
201 TIGR00483 EF-1_alpha translati 99.6 1.3E-15 2.8E-20 158.0 10.9 156 237-402 4-200 (426)
202 PRK09554 feoB ferrous iron tra 99.6 3.8E-15 8.3E-20 163.2 14.9 153 240-408 3-167 (772)
203 cd01876 YihA_EngB The YihA (En 99.6 7.3E-15 1.6E-19 130.9 12.7 152 242-407 1-169 (170)
204 KOG0076|consensus 99.6 2.9E-15 6.4E-20 131.2 8.2 162 239-411 16-189 (197)
205 PRK10512 selenocysteinyl-tRNA- 99.6 1.2E-14 2.6E-19 156.1 14.2 155 242-408 2-165 (614)
206 PRK10218 GTP-binding protein; 99.6 1.1E-14 2.5E-19 155.5 13.8 158 241-409 6-195 (607)
207 PRK04004 translation initiatio 99.6 2E-14 4.3E-19 153.6 14.5 158 239-407 5-216 (586)
208 cd01883 EF1_alpha Eukaryotic e 99.6 7E-15 1.5E-19 138.9 9.7 145 242-398 1-194 (219)
209 cd04167 Snu114p Snu114p subfam 99.6 1.3E-14 2.9E-19 136.4 11.3 149 242-398 2-192 (213)
210 KOG1191|consensus 99.6 4.7E-15 1E-19 149.2 7.8 169 239-413 267-454 (531)
211 PRK12736 elongation factor Tu; 99.5 2.8E-14 6E-19 146.4 12.4 157 238-407 10-199 (394)
212 TIGR03680 eif2g_arch translati 99.5 1.9E-14 4.2E-19 148.1 10.8 163 239-408 3-195 (406)
213 CHL00071 tufA elongation facto 99.5 4.1E-14 9E-19 145.8 12.9 148 237-397 9-181 (409)
214 TIGR00485 EF-Tu translation el 99.5 4.3E-14 9.3E-19 145.1 13.0 146 237-395 9-179 (394)
215 PRK12735 elongation factor Tu; 99.5 3.5E-14 7.7E-19 145.7 12.2 157 238-407 10-201 (396)
216 TIGR01394 TypA_BipA GTP-bindin 99.5 3.7E-14 8E-19 151.6 12.8 155 242-410 3-192 (594)
217 cd04165 GTPBP1_like GTPBP1-lik 99.5 5E-14 1.1E-18 133.4 11.7 157 242-406 1-220 (224)
218 KOG0074|consensus 99.5 1.5E-14 3.2E-19 122.5 5.9 161 234-407 11-177 (185)
219 PRK04000 translation initiatio 99.5 6.2E-14 1.4E-18 144.4 11.2 165 237-408 6-200 (411)
220 COG2229 Predicted GTPase [Gene 99.5 2.9E-13 6.2E-18 120.5 13.7 155 239-407 9-176 (187)
221 cd04168 TetM_like Tet(M)-like 99.5 1.3E-13 2.7E-18 131.8 11.8 113 242-365 1-129 (237)
222 cd01885 EF2 EF2 (for archaea a 99.5 1.3E-13 2.9E-18 130.1 11.7 116 242-365 2-138 (222)
223 COG0218 Predicted GTPase [Gene 99.5 3.7E-13 8.1E-18 122.3 14.0 158 239-410 23-198 (200)
224 KOG0072|consensus 99.5 1.3E-13 2.9E-18 117.1 10.3 160 239-411 17-181 (182)
225 KOG1423|consensus 99.5 1.8E-13 4E-18 130.2 11.2 162 236-410 68-272 (379)
226 COG0370 FeoB Fe2+ transport sy 99.5 2.1E-13 4.5E-18 143.1 11.7 157 240-412 3-167 (653)
227 COG2262 HflX GTPases [General 99.5 4.9E-13 1.1E-17 132.8 13.5 159 239-411 191-358 (411)
228 TIGR02034 CysN sulfate adenyly 99.5 2.2E-13 4.9E-18 140.2 11.5 147 241-399 1-187 (406)
229 PLN03127 Elongation factor Tu; 99.5 4.3E-13 9.3E-18 139.2 13.2 157 238-407 59-250 (447)
230 PLN03126 Elongation factor Tu; 99.5 4.8E-13 1E-17 139.6 13.5 148 237-397 78-250 (478)
231 PRK00049 elongation factor Tu; 99.5 5.5E-13 1.2E-17 136.8 13.3 146 238-396 10-180 (396)
232 cd01886 EF-G Elongation factor 99.4 5.9E-13 1.3E-17 129.6 11.4 138 242-392 1-158 (270)
233 PRK05124 cysN sulfate adenylyl 99.4 4.9E-13 1.1E-17 139.9 11.7 152 237-400 24-216 (474)
234 KOG0462|consensus 99.4 6.4E-13 1.4E-17 135.0 11.6 158 241-409 61-235 (650)
235 COG1084 Predicted GTPase [Gene 99.4 1.3E-12 2.9E-17 126.1 12.7 167 230-408 158-335 (346)
236 PF10662 PduV-EutP: Ethanolami 99.4 7.2E-13 1.6E-17 115.2 9.9 136 242-405 3-142 (143)
237 COG0532 InfB Translation initi 99.4 4.4E-12 9.5E-17 129.9 16.3 159 240-411 5-172 (509)
238 cd04169 RF3 RF3 subfamily. Pe 99.4 1.4E-12 2.9E-17 126.9 12.1 114 242-366 4-137 (267)
239 PRK05506 bifunctional sulfate 99.4 6.9E-13 1.5E-17 144.0 10.6 149 239-399 23-211 (632)
240 KOG1707|consensus 99.4 2.5E-13 5.4E-18 139.1 5.6 168 238-412 7-178 (625)
241 cd04104 p47_IIGP_like p47 (47- 99.4 2.2E-12 4.7E-17 119.9 11.5 163 240-414 1-189 (197)
242 cd01899 Ygr210 Ygr210 subfamil 99.4 3.9E-12 8.4E-17 126.3 13.5 164 243-409 1-269 (318)
243 KOG1489|consensus 99.4 1.7E-12 3.7E-17 124.4 10.4 158 241-406 197-364 (366)
244 PRK00741 prfC peptide chain re 99.4 3.8E-12 8.1E-17 134.6 13.7 115 240-365 10-144 (526)
245 cd04170 EF-G_bact Elongation f 99.4 3.2E-12 6.8E-17 124.6 11.6 143 242-398 1-162 (268)
246 PLN00043 elongation factor 1-a 99.4 1.1E-12 2.5E-17 136.2 8.9 149 238-399 5-203 (447)
247 PRK13351 elongation factor G; 99.4 3.3E-12 7.2E-17 140.1 13.1 114 240-366 8-139 (687)
248 PTZ00141 elongation factor 1- 99.4 3.4E-12 7.3E-17 132.7 11.1 149 238-399 5-203 (446)
249 cd01850 CDC_Septin CDC/Septin. 99.3 7E-12 1.5E-16 122.5 11.1 139 240-391 4-184 (276)
250 COG0481 LepA Membrane GTPase L 99.3 1.4E-11 3E-16 123.6 13.1 159 242-409 11-186 (603)
251 TIGR00484 EF-G translation elo 99.3 4.6E-12 1E-16 138.8 10.3 140 241-394 11-171 (689)
252 PRK12739 elongation factor G; 99.3 1.3E-11 2.9E-16 135.2 13.4 114 240-366 8-139 (691)
253 TIGR00503 prfC peptide chain r 99.3 2.9E-11 6.3E-16 127.9 14.3 116 239-365 10-145 (527)
254 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 1.6E-11 3.5E-16 116.2 11.1 161 242-411 1-178 (232)
255 PF01926 MMR_HSR1: 50S ribosom 99.3 1.5E-11 3.3E-16 104.0 9.6 106 242-361 1-116 (116)
256 COG0536 Obg Predicted GTPase [ 99.3 1.8E-11 3.9E-16 118.9 11.2 167 241-413 160-337 (369)
257 PTZ00327 eukaryotic translatio 99.3 1.5E-11 3.3E-16 127.7 11.0 164 238-408 32-232 (460)
258 PRK09602 translation-associate 99.3 3.1E-11 6.7E-16 123.3 13.0 86 241-326 2-113 (396)
259 COG1163 DRG Predicted GTPase [ 99.3 3.1E-11 6.6E-16 116.4 11.7 159 240-412 63-292 (365)
260 KOG1145|consensus 99.3 8.3E-11 1.8E-15 119.8 15.0 158 238-409 151-316 (683)
261 PRK12740 elongation factor G; 99.3 3E-11 6.4E-16 132.3 12.5 108 246-366 1-126 (668)
262 PRK00007 elongation factor G; 99.2 4.6E-11 1E-15 130.9 11.9 140 241-394 11-171 (693)
263 KOG1490|consensus 99.2 6.1E-11 1.3E-15 119.7 10.8 178 230-418 158-350 (620)
264 PRK14845 translation initiatio 99.2 1.4E-10 3E-15 129.8 14.6 150 251-408 472-672 (1049)
265 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 2.5E-10 5.4E-15 105.9 14.0 161 241-411 1-186 (196)
266 KOG0084|consensus 99.2 2.8E-11 6E-16 108.8 5.9 48 103-150 4-51 (205)
267 PRK09866 hypothetical protein; 99.2 5.6E-10 1.2E-14 117.3 16.3 111 291-407 229-351 (741)
268 COG3596 Predicted GTPase [Gene 99.1 1.1E-10 2.3E-15 110.6 7.4 165 237-411 36-224 (296)
269 COG5256 TEF1 Translation elong 99.1 1.5E-10 3.3E-15 115.1 8.8 182 168-400 5-202 (428)
270 TIGR00157 ribosome small subun 99.1 2.7E-10 5.8E-15 109.4 9.8 95 303-406 24-120 (245)
271 PF09439 SRPRB: Signal recogni 99.1 8.5E-11 1.8E-15 106.8 5.5 118 241-365 4-125 (181)
272 TIGR00490 aEF-2 translation el 99.1 1.5E-10 3.2E-15 127.5 8.2 116 239-365 18-151 (720)
273 KOG0082|consensus 99.0 1.4E-09 3E-14 107.8 10.6 144 264-414 174-349 (354)
274 KOG0077|consensus 99.0 5.1E-10 1.1E-14 97.8 6.5 158 238-407 18-191 (193)
275 cd01882 BMS1 Bms1. Bms1 is an 99.0 1.9E-09 4.1E-14 102.3 11.0 140 238-396 37-183 (225)
276 COG2895 CysN GTPases - Sulfate 99.0 1.8E-09 3.8E-14 105.2 10.1 147 239-398 5-192 (431)
277 PTZ00258 GTP-binding protein; 99.0 3.5E-09 7.7E-14 107.4 12.0 86 239-326 20-126 (390)
278 KOG0090|consensus 99.0 1.2E-08 2.5E-13 93.2 13.7 157 241-407 39-237 (238)
279 PRK09435 membrane ATPase/prote 99.0 2.2E-09 4.8E-14 106.9 9.5 109 290-413 147-264 (332)
280 TIGR00991 3a0901s02IAP34 GTP-b 98.9 6.1E-09 1.3E-13 102.0 10.6 131 228-366 26-167 (313)
281 COG4917 EutP Ethanolamine util 98.9 4.2E-09 9.2E-14 88.0 8.1 137 242-406 3-143 (148)
282 KOG0098|consensus 98.9 1.7E-09 3.6E-14 96.4 5.7 47 105-151 3-49 (216)
283 PRK07560 elongation factor EF- 98.9 7E-09 1.5E-13 114.5 11.9 116 241-365 21-152 (731)
284 KOG0394|consensus 98.9 1.9E-09 4E-14 95.9 5.8 47 104-150 5-51 (210)
285 smart00010 small_GTPase Small 98.9 4.3E-09 9.3E-14 89.2 7.8 113 241-398 1-115 (124)
286 KOG0080|consensus 98.9 3.6E-09 7.7E-14 92.0 7.1 47 103-149 6-52 (209)
287 KOG1532|consensus 98.9 1.7E-09 3.7E-14 101.9 5.2 215 167-414 16-269 (366)
288 KOG0705|consensus 98.9 1.3E-08 2.8E-13 103.8 11.9 177 237-426 27-206 (749)
289 PRK09601 GTP-binding protein Y 98.9 1.4E-08 3.1E-13 101.9 12.1 86 241-326 3-107 (364)
290 PLN00116 translation elongatio 98.9 3.4E-09 7.4E-14 118.5 8.0 118 240-365 19-163 (843)
291 KOG1144|consensus 98.9 9.4E-09 2E-13 107.9 10.2 167 240-414 475-692 (1064)
292 PTZ00416 elongation factor 2; 98.9 3.6E-09 7.9E-14 118.1 7.6 117 241-365 20-157 (836)
293 KOG0095|consensus 98.8 2.6E-09 5.7E-14 91.6 4.6 49 102-150 1-49 (213)
294 COG1217 TypA Predicted membran 98.8 2.2E-08 4.7E-13 100.7 11.7 157 241-411 6-197 (603)
295 PF05783 DLIC: Dynein light in 98.8 3.9E-08 8.5E-13 102.2 13.6 168 239-411 24-266 (472)
296 KOG0458|consensus 98.8 9.8E-09 2.1E-13 105.9 8.9 141 250-400 218-373 (603)
297 KOG1707|consensus 98.8 1.6E-08 3.4E-13 104.4 10.2 161 240-412 425-586 (625)
298 KOG0094|consensus 98.8 3.2E-09 7E-14 95.4 4.6 78 169-249 21-103 (221)
299 TIGR00101 ureG urease accessor 98.8 1.6E-08 3.5E-13 94.1 9.1 104 291-409 91-196 (199)
300 cd01853 Toc34_like Toc34-like 98.8 3.7E-08 8.1E-13 94.7 11.5 125 234-366 25-163 (249)
301 KOG3905|consensus 98.8 5E-08 1.1E-12 94.0 12.0 169 238-411 50-292 (473)
302 TIGR02836 spore_IV_A stage IV 98.8 3.8E-08 8.3E-13 98.8 11.5 159 239-406 16-234 (492)
303 KOG0079|consensus 98.8 2.3E-09 4.9E-14 91.9 1.7 49 103-151 3-51 (198)
304 cd01900 YchF YchF subfamily. 98.8 2.2E-08 4.7E-13 97.3 8.5 81 243-326 1-103 (274)
305 TIGR00073 hypB hydrogenase acc 98.7 2.2E-08 4.7E-13 93.8 7.5 101 292-407 103-205 (207)
306 cd00066 G-alpha G protein alph 98.7 8.1E-08 1.8E-12 95.8 11.6 123 290-412 159-314 (317)
307 KOG0087|consensus 98.7 2E-08 4.4E-13 91.4 6.1 52 101-152 7-58 (222)
308 KOG3886|consensus 98.7 7E-08 1.5E-12 89.1 9.4 120 241-366 5-130 (295)
309 KOG0461|consensus 98.7 8.9E-08 1.9E-12 93.0 10.5 168 240-415 7-199 (522)
310 cd01855 YqeH YqeH. YqeH is an 98.7 8.6E-08 1.9E-12 88.4 9.7 95 305-409 24-125 (190)
311 PF03029 ATP_bind_1: Conserved 98.7 1.2E-08 2.5E-13 97.6 3.8 110 293-408 92-236 (238)
312 smart00275 G_alpha G protein a 98.7 7.3E-08 1.6E-12 97.0 9.6 138 269-413 168-338 (342)
313 cd01859 MJ1464 MJ1464. This f 98.7 9.2E-08 2E-12 85.2 8.5 94 306-409 3-96 (156)
314 COG5257 GCD11 Translation init 98.6 1.7E-07 3.6E-12 90.5 10.0 170 238-413 8-206 (415)
315 PF04548 AIG1: AIG1 family; I 98.6 1.9E-07 4.1E-12 87.8 10.2 162 241-412 1-189 (212)
316 KOG0078|consensus 98.6 3.5E-08 7.6E-13 90.1 4.9 51 104-154 8-58 (207)
317 COG3276 SelB Selenocysteine-sp 98.6 4E-07 8.7E-12 91.7 12.5 156 242-409 2-162 (447)
318 COG4108 PrfC Peptide chain rel 98.6 2.6E-07 5.6E-12 92.6 10.6 131 241-383 13-163 (528)
319 KOG0092|consensus 98.5 1.6E-07 3.4E-12 84.6 6.1 75 169-246 4-83 (200)
320 PF00350 Dynamin_N: Dynamin fa 98.5 2.5E-07 5.4E-12 83.1 7.2 63 293-362 102-168 (168)
321 PF05049 IIGP: Interferon-indu 98.5 1.8E-07 3.9E-12 94.1 6.1 165 238-414 33-223 (376)
322 PRK00098 GTPase RsgA; Reviewed 98.5 3.9E-07 8.4E-12 90.2 8.1 86 312-405 77-163 (298)
323 TIGR00750 lao LAO/AO transport 98.5 8.8E-07 1.9E-11 87.7 10.4 105 290-409 125-238 (300)
324 PRK12289 GTPase RsgA; Reviewed 98.5 6.5E-07 1.4E-11 90.2 9.5 92 307-407 81-173 (352)
325 KOG0393|consensus 98.4 2.2E-07 4.7E-12 85.1 5.1 85 170-258 4-94 (198)
326 KOG0086|consensus 98.4 1.9E-07 4.2E-12 80.6 4.4 49 103-151 4-52 (214)
327 PRK13768 GTPase; Provisional 98.4 9.7E-07 2.1E-11 85.3 9.9 110 293-408 98-246 (253)
328 TIGR03597 GTPase_YqeH ribosome 98.4 7.4E-07 1.6E-11 90.5 9.4 96 302-407 50-151 (360)
329 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.4 4.5E-07 9.7E-12 83.2 7.1 39 107-145 4-42 (182)
330 cd01892 Miro2 Miro2 subfamily. 98.4 3.4E-07 7.4E-12 82.7 6.2 45 107-151 3-48 (169)
331 KOG0410|consensus 98.4 1.5E-07 3.3E-12 90.9 3.9 159 238-411 176-343 (410)
332 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.4 3.6E-07 7.8E-12 86.5 6.4 37 109-145 2-38 (222)
333 cd04131 Rnd Rnd subfamily. Th 98.4 5.3E-07 1.2E-11 82.3 7.2 37 109-145 2-38 (178)
334 cd01854 YjeQ_engC YjeQ/EngC. 98.4 8.7E-07 1.9E-11 87.2 9.2 88 310-406 73-161 (287)
335 smart00053 DYNc Dynamin, GTPas 98.4 1.1E-06 2.4E-11 83.8 9.5 68 292-366 125-206 (240)
336 COG0480 FusA Translation elong 98.4 9.4E-07 2E-11 95.9 9.4 115 240-366 10-142 (697)
337 KOG0468|consensus 98.4 9.4E-07 2E-11 92.3 8.6 121 237-365 125-262 (971)
338 PF02421 FeoB_N: Ferrous iron 98.3 2.6E-07 5.7E-12 82.2 2.7 44 109-152 1-44 (156)
339 PRK12288 GTPase RsgA; Reviewed 98.3 2.7E-06 5.8E-11 85.8 10.1 88 312-407 117-206 (347)
340 TIGR00993 3a0901s04IAP86 chlor 98.3 2.3E-06 5E-11 90.8 10.0 119 240-366 118-250 (763)
341 cd04142 RRP22 RRP22 subfamily. 98.3 5.2E-07 1.1E-11 83.9 4.7 41 109-149 1-41 (198)
342 cd04107 Rab32_Rab38 Rab38/Rab3 98.3 4.8E-07 1E-11 84.1 4.3 44 109-152 1-44 (201)
343 COG0050 TufB GTPases - transla 98.3 2.3E-06 5.1E-11 81.8 8.7 142 239-393 11-177 (394)
344 KOG0097|consensus 98.3 7E-07 1.5E-11 76.1 4.6 55 100-154 3-57 (215)
345 COG0486 ThdF Predicted GTPase 98.3 7.2E-07 1.6E-11 90.8 5.6 77 109-185 218-312 (454)
346 PF03308 ArgK: ArgK protein; 98.3 7.3E-07 1.6E-11 84.7 5.3 108 290-414 120-235 (266)
347 cd01858 NGP_1 NGP-1. Autoanti 98.3 1.7E-06 3.8E-11 77.1 7.4 89 311-408 4-94 (157)
348 KOG0091|consensus 98.3 4.7E-07 1E-11 79.2 3.5 42 106-147 6-47 (213)
349 COG0012 Predicted GTPase, prob 98.3 6.1E-06 1.3E-10 82.1 11.5 88 240-327 2-109 (372)
350 KOG1486|consensus 98.3 5.2E-06 1.1E-10 77.7 10.2 163 239-413 61-292 (364)
351 cd04119 RJL RJL (RabJ-Like) su 98.3 9E-07 2E-11 78.7 4.9 43 109-151 1-43 (168)
352 cd01867 Rab8_Rab10_Rab13_like 98.3 1.2E-06 2.6E-11 78.7 5.5 45 107-151 2-46 (167)
353 cd04102 RabL3 RabL3 (Rab-like3 98.3 7.2E-07 1.6E-11 83.2 4.0 43 109-151 1-43 (202)
354 cd04127 Rab27A Rab27a subfamil 98.3 1.3E-06 2.8E-11 79.3 5.5 46 106-151 2-47 (180)
355 PRK10463 hydrogenase nickel in 98.2 2.9E-07 6.2E-12 89.7 1.1 55 353-407 231-287 (290)
356 cd01849 YlqF_related_GTPase Yl 98.2 4.5E-06 9.9E-11 74.3 8.3 84 317-409 1-85 (155)
357 COG0378 HypB Ni2+-binding GTPa 98.2 4.6E-06 1E-10 75.8 8.1 54 355-408 145-200 (202)
358 cd01874 Cdc42 Cdc42 subfamily. 98.2 1.4E-06 3.1E-11 79.2 4.9 38 109-146 2-39 (175)
359 cd01868 Rab11_like Rab11-like. 98.2 1.7E-06 3.7E-11 77.2 5.4 45 107-151 2-46 (165)
360 TIGR02528 EutP ethanolamine ut 98.2 6.1E-07 1.3E-11 78.2 2.4 74 110-185 2-78 (142)
361 cd04110 Rab35 Rab35 subfamily. 98.2 1.9E-06 4.1E-11 80.0 5.9 46 106-151 4-49 (199)
362 PLN03071 GTP-binding nuclear p 98.2 2E-06 4.4E-11 81.2 6.0 45 106-150 11-55 (219)
363 PLN03110 Rab GTPase; Provision 98.2 2.7E-06 5.9E-11 80.1 6.1 47 105-151 9-55 (216)
364 cd01865 Rab3 Rab3 subfamily. 98.2 2E-06 4.4E-11 77.0 4.9 42 109-150 2-43 (165)
365 cd04109 Rab28 Rab28 subfamily. 98.2 1.8E-06 3.8E-11 81.3 4.6 43 109-151 1-43 (215)
366 cd04122 Rab14 Rab14 subfamily. 98.2 2.5E-06 5.4E-11 76.4 5.3 43 108-150 2-44 (166)
367 PF00735 Septin: Septin; Inte 98.2 7.4E-06 1.6E-10 80.2 8.9 115 240-366 4-156 (281)
368 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.2 3E-06 6.4E-11 75.8 5.6 44 108-151 2-45 (166)
369 cd04108 Rab36_Rab34 Rab34/Rab3 98.2 2.4E-06 5.2E-11 77.2 5.0 41 110-150 2-42 (170)
370 cd01866 Rab2 Rab2 subfamily. 98.1 3.4E-06 7.3E-11 75.8 5.6 47 106-152 2-48 (168)
371 cd01875 RhoG RhoG subfamily. 98.1 3.2E-06 7E-11 77.9 5.4 83 170-256 3-90 (191)
372 cd04116 Rab9 Rab9 subfamily. 98.1 3.5E-06 7.6E-11 75.6 5.5 45 107-151 4-48 (170)
373 KOG4252|consensus 98.1 1.5E-06 3.2E-11 77.1 2.9 53 99-151 11-63 (246)
374 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 5.8E-06 1.3E-10 72.4 6.6 77 310-396 6-84 (141)
375 cd01864 Rab19 Rab19 subfamily. 98.1 3.7E-06 8.1E-11 75.1 5.5 46 107-152 2-47 (165)
376 cd04111 Rab39 Rab39 subfamily. 98.1 3.1E-06 6.7E-11 79.4 5.2 44 108-151 2-45 (211)
377 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.1 2.8E-06 6.1E-11 76.9 4.5 38 109-146 3-40 (172)
378 cd00877 Ran Ran (Ras-related n 98.1 3.2E-06 6.9E-11 76.0 4.8 42 109-150 1-42 (166)
379 cd04124 RabL2 RabL2 subfamily. 98.1 2.5E-06 5.5E-11 76.1 4.0 39 109-147 1-39 (161)
380 cd04128 Spg1 Spg1p. Spg1p (se 98.1 3.5E-06 7.7E-11 77.1 4.9 56 171-229 1-56 (182)
381 PRK15494 era GTPase Era; Provi 98.1 7.8E-06 1.7E-10 82.4 7.8 28 107-134 51-78 (339)
382 cd04117 Rab15 Rab15 subfamily. 98.1 3.5E-06 7.5E-11 75.3 4.6 42 109-150 1-42 (161)
383 cd04133 Rop_like Rop subfamily 98.1 5.6E-06 1.2E-10 75.5 6.1 84 171-258 2-90 (176)
384 PLN03108 Rab family protein; P 98.1 4.9E-06 1.1E-10 78.0 5.8 46 106-151 4-49 (210)
385 cd04106 Rab23_lke Rab23-like s 98.1 3.4E-06 7.4E-11 74.8 4.5 42 109-150 1-42 (162)
386 cd04138 H_N_K_Ras_like H-Ras/N 98.1 3.6E-06 7.9E-11 74.3 4.6 37 109-145 2-38 (162)
387 COG1159 Era GTPase [General fu 98.1 2.6E-06 5.7E-11 82.2 3.8 26 109-134 7-32 (298)
388 cd04162 Arl9_Arfrp2_like Arl9/ 98.1 3.8E-06 8.2E-11 75.4 4.5 35 111-145 2-36 (164)
389 PTZ00369 Ras-like protein; Pro 98.1 4.6E-06 1E-10 76.6 4.9 38 109-146 6-43 (189)
390 PF00071 Ras: Ras family; Int 98.1 4.9E-06 1.1E-10 73.9 4.9 42 110-151 1-42 (162)
391 cd04125 RabA_like RabA-like su 98.0 4.7E-06 1E-10 76.4 4.7 43 109-151 1-43 (188)
392 COG5258 GTPBP1 GTPase [General 98.0 0.00016 3.6E-09 71.7 15.5 161 237-405 114-335 (527)
393 cd04132 Rho4_like Rho4-like su 98.0 4.9E-06 1.1E-10 76.0 4.7 39 109-147 1-39 (187)
394 cd04175 Rap1 Rap1 subgroup. T 98.0 5E-06 1.1E-10 74.1 4.7 38 109-146 2-39 (164)
395 cd04118 Rab24 Rab24 subfamily. 98.0 5.1E-06 1.1E-10 76.4 4.8 42 109-150 1-43 (193)
396 KOG0093|consensus 98.0 6.9E-06 1.5E-10 70.7 5.1 53 99-151 12-64 (193)
397 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.0 4.4E-06 9.5E-11 79.6 4.3 85 169-257 12-101 (232)
398 cd01862 Rab7 Rab7 subfamily. 98.0 5.6E-06 1.2E-10 74.1 4.8 43 109-151 1-43 (172)
399 COG0218 Predicted GTPase [Gene 98.0 9.5E-06 2.1E-10 74.2 5.9 81 108-189 24-126 (200)
400 cd04120 Rab12 Rab12 subfamily. 98.0 4.5E-06 9.7E-11 77.9 3.9 55 172-229 2-56 (202)
401 cd04145 M_R_Ras_like M-Ras/R-R 98.0 5.1E-06 1.1E-10 73.8 4.1 38 109-146 3-40 (164)
402 cd04136 Rap_like Rap-like subf 98.0 7.3E-06 1.6E-10 72.7 5.1 34 109-142 2-35 (163)
403 cd04115 Rab33B_Rab33A Rab33B/R 98.0 7.4E-06 1.6E-10 73.7 5.1 45 108-152 2-46 (170)
404 COG3640 CooC CO dehydrogenase 98.0 3.7E-05 8.1E-10 71.8 9.6 77 292-383 134-211 (255)
405 cd01861 Rab6 Rab6 subfamily. 98.0 7.3E-06 1.6E-10 72.6 4.9 44 109-152 1-44 (161)
406 KOG2486|consensus 98.0 6.1E-06 1.3E-10 78.6 4.5 154 238-407 134-314 (320)
407 cd01856 YlqF YlqF. Proteins o 98.0 1.9E-05 4.2E-10 71.5 7.6 91 307-409 11-101 (171)
408 PF00503 G-alpha: G-protein al 98.0 2E-05 4.3E-10 81.0 8.5 119 290-408 234-389 (389)
409 cd04149 Arf6 Arf6 subfamily. 98.0 6.8E-06 1.5E-10 74.1 4.5 39 108-147 9-47 (168)
410 COG1703 ArgK Putative periplas 98.0 2E-05 4.4E-10 76.0 7.7 108 290-414 142-259 (323)
411 cd04121 Rab40 Rab40 subfamily. 98.0 7E-06 1.5E-10 75.7 4.2 57 170-229 6-62 (189)
412 PLN00023 GTP-binding protein; 97.9 1.4E-05 3E-10 79.1 6.2 93 164-256 15-122 (334)
413 cd04140 ARHI_like ARHI subfami 97.9 8E-06 1.7E-10 73.1 4.1 37 109-145 2-38 (165)
414 cd04126 Rab20 Rab20 subfamily. 97.9 8.7E-06 1.9E-10 77.0 4.5 40 109-149 1-40 (220)
415 cd04135 Tc10 TC10 subfamily. 97.9 1.6E-05 3.5E-10 71.5 6.0 34 109-142 1-34 (174)
416 KOG0448|consensus 97.9 3.3E-05 7.1E-10 81.6 8.9 148 238-393 107-310 (749)
417 PTZ00133 ADP-ribosylation fact 97.9 1E-05 2.2E-10 74.0 4.6 39 108-147 17-55 (182)
418 cd04176 Rap2 Rap2 subgroup. T 97.9 1.2E-05 2.7E-10 71.4 5.0 34 109-142 2-35 (163)
419 cd04152 Arl4_Arl7 Arl4/Arl7 su 97.9 1.3E-05 2.7E-10 73.4 5.0 42 108-150 3-44 (183)
420 smart00177 ARF ARF-like small 97.9 1.4E-05 2.9E-10 72.6 5.2 39 108-147 13-51 (175)
421 KOG1191|consensus 97.9 1E-05 2.2E-10 82.5 4.7 77 109-185 269-364 (531)
422 PRK04213 GTP-binding protein; 97.9 1.5E-05 3.2E-10 73.9 5.3 38 108-145 9-46 (201)
423 cd04150 Arf1_5_like Arf1-Arf5- 97.9 1.2E-05 2.7E-10 71.6 4.6 37 109-146 1-37 (159)
424 smart00175 RAB Rab subfamily o 97.9 1.4E-05 2.9E-10 70.9 4.8 44 109-152 1-44 (164)
425 cd04113 Rab4 Rab4 subfamily. 97.9 1.4E-05 3.1E-10 70.8 4.8 42 109-150 1-42 (161)
426 cd04157 Arl6 Arl6 subfamily. 97.9 8.3E-06 1.8E-10 72.3 3.1 37 110-146 1-38 (162)
427 cd01870 RhoA_like RhoA-like su 97.9 1.9E-05 4.1E-10 71.1 5.6 38 109-146 2-39 (175)
428 cd01860 Rab5_related Rab5-rela 97.9 1.8E-05 3.8E-10 70.3 5.2 44 109-152 2-45 (163)
429 cd04158 ARD1 ARD1 subfamily. 97.9 1.7E-05 3.7E-10 71.4 5.1 36 110-146 1-36 (169)
430 PRK13796 GTPase YqeH; Provisio 97.9 6.7E-05 1.5E-09 76.4 9.9 93 304-407 58-157 (365)
431 KOG0081|consensus 97.9 7.4E-07 1.6E-11 77.5 -3.8 49 103-151 4-52 (219)
432 TIGR00450 mnmE_trmE_thdF tRNA 97.9 1.5E-05 3.2E-10 83.1 5.0 57 109-165 204-261 (442)
433 cd04130 Wrch_1 Wrch-1 subfamil 97.9 2.4E-05 5.3E-10 70.5 5.9 33 109-141 1-33 (173)
434 cd04159 Arl10_like Arl10-like 97.9 1.3E-05 2.7E-10 70.2 3.8 37 111-147 2-38 (159)
435 cd04101 RabL4 RabL4 (Rab-like4 97.9 1.6E-05 3.4E-10 70.8 4.4 42 109-150 1-44 (164)
436 PLN03118 Rab family protein; P 97.8 2.5E-05 5.4E-10 73.1 5.9 46 105-151 11-56 (211)
437 PTZ00132 GTP-binding nuclear p 97.8 2.1E-05 4.5E-10 73.9 5.2 44 107-150 8-51 (215)
438 cd01893 Miro1 Miro1 subfamily. 97.8 2.2E-05 4.8E-10 70.3 5.0 31 109-139 1-31 (166)
439 PLN00223 ADP-ribosylation fact 97.8 1.8E-05 3.9E-10 72.3 4.4 39 108-147 17-55 (181)
440 cd01863 Rab18 Rab18 subfamily. 97.8 2.4E-05 5.1E-10 69.4 5.0 42 109-150 1-42 (161)
441 TIGR03596 GTPase_YlqF ribosome 97.8 6.5E-05 1.4E-09 73.6 8.4 90 309-410 15-104 (276)
442 cd04114 Rab30 Rab30 subfamily. 97.8 3.4E-05 7.4E-10 68.9 6.0 46 106-151 5-50 (169)
443 cd04112 Rab26 Rab26 subfamily. 97.8 2.3E-05 5.1E-10 72.1 5.0 41 109-149 1-42 (191)
444 cd04146 RERG_RasL11_like RERG/ 97.8 1.8E-05 3.9E-10 70.6 4.1 36 110-145 1-36 (165)
445 cd04148 RGK RGK subfamily. Th 97.8 2.3E-05 5E-10 74.1 5.0 43 109-151 1-44 (221)
446 TIGR03156 GTP_HflX GTP-binding 97.8 1.5E-05 3.2E-10 80.6 3.9 45 108-152 189-233 (351)
447 TIGR03598 GTPase_YsxC ribosome 97.8 3.6E-05 7.7E-10 70.1 6.1 39 107-145 17-55 (179)
448 KOG1143|consensus 97.8 0.00017 3.6E-09 71.3 10.8 100 292-399 249-378 (591)
449 smart00173 RAS Ras subfamily o 97.8 2.3E-05 5E-10 69.7 4.4 35 109-143 1-35 (164)
450 cd00154 Rab Rab family. Rab G 97.8 2.6E-05 5.7E-10 68.0 4.7 44 109-152 1-44 (159)
451 cd04144 Ras2 Ras2 subfamily. 97.8 2.1E-05 4.6E-10 72.3 4.1 36 110-145 1-36 (190)
452 cd04103 Centaurin_gamma Centau 97.8 2.5E-05 5.4E-10 69.8 4.4 33 109-141 1-33 (158)
453 PRK11058 GTPase HflX; Provisio 97.8 2.7E-05 5.8E-10 80.7 5.2 57 109-165 198-255 (426)
454 cd04147 Ras_dva Ras-dva subfam 97.8 2.1E-05 4.5E-10 72.9 3.9 33 110-142 1-33 (198)
455 TIGR00436 era GTP-binding prot 97.8 3.6E-05 7.8E-10 75.0 5.7 25 110-134 2-26 (270)
456 COG1100 GTPase SAR1 and relate 97.8 2.5E-05 5.4E-10 73.1 4.5 43 109-151 6-48 (219)
457 cd04161 Arl2l1_Arl13_like Arl2 97.8 1.6E-05 3.5E-10 71.5 3.0 35 110-145 1-35 (167)
458 cd04178 Nucleostemin_like Nucl 97.8 1.5E-05 3.3E-10 72.4 2.7 56 239-302 116-172 (172)
459 cd04154 Arl2 Arl2 subfamily. 97.7 3.5E-05 7.5E-10 69.6 5.0 38 108-146 14-51 (173)
460 cd01858 NGP_1 NGP-1. Autoanti 97.7 1.8E-05 3.8E-10 70.6 2.9 55 240-302 102-157 (157)
461 COG5019 CDC3 Septin family pro 97.7 0.00016 3.4E-09 71.8 9.7 114 240-365 23-175 (373)
462 cd01871 Rac1_like Rac1-like su 97.7 5E-05 1.1E-09 68.9 5.8 55 171-229 2-56 (174)
463 cd01873 RhoBTB RhoBTB subfamil 97.7 9.2E-05 2E-09 68.6 7.6 34 109-142 3-42 (195)
464 cd04177 RSR1 RSR1 subgroup. R 97.7 3.5E-05 7.6E-10 69.1 4.6 37 109-145 2-38 (168)
465 cd04151 Arl1 Arl1 subfamily. 97.7 2.1E-05 4.6E-10 69.7 3.0 36 110-146 1-36 (158)
466 cd01857 HSR1_MMR1 HSR1/MMR1. 97.7 2E-05 4.3E-10 69.0 2.7 53 242-302 85-138 (141)
467 cd04156 ARLTS1 ARLTS1 subfamil 97.7 2.7E-05 5.8E-10 69.0 3.5 37 110-147 1-37 (160)
468 cd04134 Rho3 Rho3 subfamily. 97.7 6.4E-05 1.4E-09 69.1 6.0 54 172-229 2-55 (189)
469 PRK09563 rbgA GTPase YlqF; Rev 97.7 0.00016 3.4E-09 71.2 9.1 90 309-410 18-107 (287)
470 KOG0463|consensus 97.7 0.00051 1.1E-08 68.0 12.3 160 233-400 126-349 (641)
471 KOG3887|consensus 97.7 0.00036 7.8E-09 65.3 10.6 165 240-413 27-206 (347)
472 PRK00454 engB GTP-binding prot 97.7 7.8E-05 1.7E-09 68.4 6.2 39 107-145 23-61 (196)
473 cd04171 SelB SelB subfamily. 97.7 3.7E-05 8.1E-10 68.0 3.9 36 110-145 2-40 (164)
474 cd04123 Rab21 Rab21 subfamily. 97.7 5.1E-05 1.1E-09 66.9 4.8 41 109-149 1-41 (162)
475 KOG0460|consensus 97.7 0.00019 4.2E-09 70.2 8.9 143 238-392 52-218 (449)
476 PRK05291 trmE tRNA modificatio 97.7 4.9E-05 1.1E-09 79.5 5.2 56 109-164 216-272 (449)
477 cd01878 HflX HflX subfamily. 97.7 7.3E-05 1.6E-09 69.4 5.9 28 107-134 40-67 (204)
478 cd04139 RalA_RalB RalA/RalB su 97.7 4.8E-05 1E-09 67.3 4.5 37 109-145 1-37 (164)
479 cd01887 IF2_eIF5B IF2/eIF5B (i 97.7 4.8E-05 1E-09 67.7 4.5 37 110-146 2-38 (168)
480 TIGR00231 small_GTP small GTP- 97.7 4.2E-05 9.2E-10 66.3 4.0 42 109-150 2-43 (161)
481 KOG0088|consensus 97.7 2.8E-05 6.1E-10 67.8 2.7 59 168-229 11-69 (218)
482 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.6 6E-05 1.3E-09 68.2 4.8 38 109-147 16-53 (174)
483 cd04143 Rhes_like Rhes_like su 97.6 4.7E-05 1E-09 73.3 4.1 55 171-229 1-55 (247)
484 smart00178 SAR Sar1p-like memb 97.6 6E-05 1.3E-09 69.0 4.7 37 108-145 17-53 (184)
485 KOG0467|consensus 97.6 0.00013 2.9E-09 77.8 7.7 114 240-364 9-136 (887)
486 cd04137 RheB Rheb (Ras Homolog 97.6 6.1E-05 1.3E-09 68.2 4.4 38 109-146 2-39 (180)
487 cd04160 Arfrp1 Arfrp1 subfamil 97.6 6E-05 1.3E-09 67.2 4.2 40 110-149 1-46 (167)
488 cd00157 Rho Rho (Ras homology) 97.6 6.9E-05 1.5E-09 66.9 4.5 34 109-142 1-34 (171)
489 KOG0099|consensus 97.6 0.00034 7.4E-09 66.2 8.7 124 290-413 200-373 (379)
490 cd00878 Arf_Arl Arf (ADP-ribos 97.6 8.4E-05 1.8E-09 65.7 4.6 37 110-147 1-37 (158)
491 cd01879 FeoB Ferrous iron tran 97.5 7.6E-05 1.6E-09 65.6 4.0 51 113-163 1-51 (158)
492 COG0370 FeoB Fe2+ transport sy 97.5 9.2E-05 2E-09 78.8 5.1 52 109-160 4-55 (653)
493 KOG2655|consensus 97.5 0.0002 4.3E-09 71.6 7.1 114 240-365 21-171 (366)
494 cd01895 EngA2 EngA2 subfamily. 97.5 0.00015 3.3E-09 64.4 5.8 26 109-134 3-28 (174)
495 PRK01889 GTPase RsgA; Reviewed 97.5 0.00035 7.5E-09 70.9 8.9 84 312-405 109-193 (356)
496 cd04164 trmE TrmE (MnmE, ThdF, 97.5 0.00017 3.8E-09 63.0 5.7 42 109-150 2-44 (157)
497 COG5192 BMS1 GTP-binding prote 97.5 0.00055 1.2E-08 70.9 9.9 142 234-394 63-211 (1077)
498 PRK09554 feoB ferrous iron tra 97.5 0.00013 2.9E-09 80.8 6.0 75 109-183 4-99 (772)
499 cd01898 Obg Obg subfamily. Th 97.5 0.00018 4E-09 64.1 5.7 24 110-133 2-25 (170)
500 cd01855 YqeH YqeH. YqeH is an 97.5 5.6E-05 1.2E-09 69.6 2.0 55 240-302 127-190 (190)
No 1
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=1.5e-40 Score=331.69 Aligned_cols=293 Identities=15% Similarity=0.124 Sum_probs=228.4
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCCCCCC------------------
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQTP------------------ 169 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 169 (452)
..|+|||||||||||||||+++++.+ ++..|++++|..+..+.|..+.+...++++.....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999 89999999999999999999888888888886322
Q ss_pred ceeEEEEcCCCCCchhhhhhhcc-------------cccccccCCCcccccee----eeecccccCCccceeeeeecccc
Q psy14768 170 SYLILITGDSTVGKTSYVQGFVQ-------------NKFLDNYKNTVGVDFST----KLLSHKKYGGRPVKLQIWDIYCT 232 (452)
Q Consensus 170 ~~~Il~vgD~~vGkTsl~~r~~~-------------~~~~~~~~~~i~~~~~~----~~~~~~~id~~~~~l~i~d~~~~ 232 (452)
+..|+||+|++.|.|..+..++. |+.+.........+|++ .++.++..|+.++...+......
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~ 163 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLEL 163 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhh
Confidence 23799999999999988665432 44444333333334443 45556666666655443333222
Q ss_pred C-C---CCCC---CcccEEEeeecccCCcceeeeccc-cccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch
Q psy14768 233 L-S---PIQI---PTYPILITGDSTVGKTSYVQGFVQ-NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR 304 (452)
Q Consensus 233 l-~---~~~~---~~~kI~ivG~~nvGKSSLin~l~~-~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~ 304 (452)
+ . .... ..++|+|+|+||||||||+|++++ ++.+.+..+++++|..+..+++ +++. +.++||||.++
T Consensus 164 l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~---~~~~--~~liDTAGiRr 238 (444)
T COG1160 164 LPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFER---DGRK--YVLIDTAGIRR 238 (444)
T ss_pred cCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEE---CCeE--EEEEECCCCCc
Confidence 2 1 1111 469999999999999999999998 7788999999999999999988 6655 56779999654
Q ss_pred ----------hhhhh-hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHH
Q psy14768 305 ----------YICMS-RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEIN 372 (452)
Q Consensus 305 ----------~~~~~-~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e 372 (452)
|+..+ ...++.+|+++||+|++++.+.|+.+......+.. ++++||+||||+.+ .+...+
T Consensus 239 k~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g--------~~~vIvvNKWDl~~~~~~~~~ 310 (444)
T COG1160 239 KGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAG--------RGIVIVVNKWDLVEEDEATME 310 (444)
T ss_pred ccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcC--------CCeEEEEEccccCCchhhHHH
Confidence 44443 35789999999999999999999999988888777 99999999999976 222333
Q ss_pred ----HHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHhhhh
Q psy14768 373 ----EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414 (452)
Q Consensus 373 ----~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~~ 414 (452)
++......+++.+.+++||++|.+++++|+.+.+...+....
T Consensus 311 ~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~r 356 (444)
T COG1160 311 EFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRR 356 (444)
T ss_pred HHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccc
Confidence 344455556777789999999999999999999999888664
No 2
>KOG0084|consensus
Probab=100.00 E-value=7.8e-38 Score=278.39 Aligned_cols=199 Identities=30% Similarity=0.548 Sum_probs=175.7
Q ss_pred CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS 316 (452)
Q Consensus 237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a 316 (452)
....+||+++|++|||||+|+.||..+.|...+.+|+|+|+..+.+.+ +++.++++|||||||++|+++...||++|
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~---~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVEL---DGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeee---cceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 344689999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768 317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL 395 (452)
Q Consensus 317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~ 395 (452)
|+||+|||+|+..||+++..|+.++.++ ...++|.+|||||+|+.+ +.++.++++.++..++.+.|+|+|||++.
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~----~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~ 158 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRY----ASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDST 158 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhh----ccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCcc
Confidence 9999999999999999999999999999 678899999999999998 99999999999999999889999999999
Q ss_pred cHHHHHHHHHHHHHHhhhhhHHHHhhccccccccccccCCCCCCcCCCCCCCCCccC
Q psy14768 396 MIEDSMNFLVDRIICSKRMEEEAVERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452 (452)
Q Consensus 396 nv~~lf~~i~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~k~~~~c~~ 452 (452)
||+++|..++..+...+........ .+...-+....+.++.+++|||
T Consensus 159 NVe~~F~~la~~lk~~~~~~~~~~~----------~~~~~~ql~~~p~~~~~~~~C~ 205 (205)
T KOG0084|consen 159 NVEDAFLTLAKELKQRKGLHVKWST----------ASLESVQLKGTPVKKSNGGCCE 205 (205)
T ss_pred CHHHHHHHHHHHHHHhcccCCCCCc----------CCCCceeeCCCCcccccCCCCC
Confidence 9999999999999877765443211 1111222222466677777775
No 3
>KOG0092|consensus
Probab=100.00 E-value=1.5e-34 Score=256.50 Aligned_cols=170 Identities=30% Similarity=0.619 Sum_probs=160.6
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..+||+++|+.+||||||+-||..+.|.....+|+|..|.+..+.+ ++..++|.||||||||+|.++.+.||++|++
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~---~~~~ikfeIWDTAGQERy~slapMYyRgA~A 80 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTV---DDNTIKFEIWDTAGQERYHSLAPMYYRGANA 80 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEe---CCcEEEEEEEEcCCcccccccccceecCCcE
Confidence 4689999999999999999999999999888999999999999999 8889999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|+|||+++..||+.++.|..++.+. ..+++-|.|||||.||.+ +++..++++.+++..+.. |+|+|||+|.||
T Consensus 81 AivvYDit~~~SF~~aK~WvkeL~~~----~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll-~~ETSAKTg~Nv 155 (200)
T KOG0092|consen 81 AIVVYDITDEESFEKAKNWVKELQRQ----ASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLL-FFETSAKTGENV 155 (200)
T ss_pred EEEEEecccHHHHHHHHHHHHHHHhh----CCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCE-EEEEecccccCH
Confidence 99999999999999999999999988 557788889999999999 999999999999999998 999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhH
Q psy14768 398 EDSMNFLVDRIICSKRMEE 416 (452)
Q Consensus 398 ~~lf~~i~~~i~~~~~~~~ 416 (452)
+++|..|++.+......+.
T Consensus 156 ~~if~~Ia~~lp~~~~~~~ 174 (200)
T KOG0092|consen 156 NEIFQAIAEKLPCSDPQER 174 (200)
T ss_pred HHHHHHHHHhccCcccccc
Confidence 9999999999987766544
No 4
>KOG0394|consensus
Probab=100.00 E-value=1.8e-34 Score=253.30 Aligned_cols=173 Identities=31% Similarity=0.616 Sum_probs=164.3
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..+||+++|++|||||||+|+|.+++|...+..|+|.||.++.+.+ +++.++++||||||||+|.++...+|+.||.
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~V---d~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQV---DDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEE---cCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 3589999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCHQYNFMSWIEVSSKEHL 395 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~~~~~~~~~evSAktg~ 395 (452)
++||||+++..||+.+..|..++....+.......|+||+|||.|+.+ ++++.+.++.|+...+..+|||+|||...
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 999999999999999999999998886666678899999999999976 89999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhhhh
Q psy14768 396 MIEDSMNFLVDRIICSKRM 414 (452)
Q Consensus 396 nv~~lf~~i~~~i~~~~~~ 414 (452)
||.++|+.+++.++.....
T Consensus 165 NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 165 NVDEAFEEIARRALANEDR 183 (210)
T ss_pred cHHHHHHHHHHHHHhccch
Confidence 9999999999999987654
No 5
>KOG0078|consensus
Probab=100.00 E-value=1.2e-33 Score=255.26 Aligned_cols=170 Identities=33% Similarity=0.622 Sum_probs=162.2
Q ss_pred CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS 316 (452)
Q Consensus 237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a 316 (452)
....+||+++|+++||||+|+.+|..+.|...+..|+|+||..+++.. ++..+.+++|||+||++|+.+...||+.|
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l---~g~~i~lQiWDtaGQerf~ti~~sYyrgA 85 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIEL---DGKKIKLQIWDTAGQERFRTITTAYYRGA 85 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEe---CCeEEEEEEEEcccchhHHHHHHHHHhhc
Confidence 445689999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768 317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL 395 (452)
Q Consensus 317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~ 395 (452)
++++||||+++..||+++..|+..++.+ ....+|++|||||+|+.+ +++..+.+++++.++|.. |+||||++|.
T Consensus 86 ~gi~LvyDitne~Sfeni~~W~~~I~e~----a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~-F~EtSAk~~~ 160 (207)
T KOG0078|consen 86 MGILLVYDITNEKSFENIRNWIKNIDEH----ASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIK-FFETSAKTNF 160 (207)
T ss_pred CeeEEEEEccchHHHHHHHHHHHHHHhh----CCCCCcEEEeeccccccccccccHHHHHHHHHHhCCe-EEEccccCCC
Confidence 9999999999999999999999999999 677999999999999988 999999999999999998 9999999999
Q ss_pred cHHHHHHHHHHHHHHhhhh
Q psy14768 396 MIEDSMNFLVDRIICSKRM 414 (452)
Q Consensus 396 nv~~lf~~i~~~i~~~~~~ 414 (452)
||.++|..+++.+.+....
T Consensus 161 NI~eaF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 161 NIEEAFLSLARDILQKLED 179 (207)
T ss_pred CHHHHHHHHHHHHHhhcch
Confidence 9999999999999974443
No 6
>KOG0080|consensus
Probab=100.00 E-value=4.3e-34 Score=245.10 Aligned_cols=172 Identities=33% Similarity=0.547 Sum_probs=162.3
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...+||+++|.+|||||||+.+|..+.|......|+|.||..+.+.+ +++.+++.||||||||+|+.+.+.||+.|.
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~v---dg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQV---DGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEE---cCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 34689999999999999999999999999888888999999999999 999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM 396 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n 396 (452)
++|+|||++...+|..+..|+.++..++ .++++..++|+||+|... +.++.++..+|+++++.. |+|+||++.+|
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ys---tn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~L-FiE~SAkt~~~ 161 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYS---TNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCL-FIECSAKTREN 161 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhc---CCccHhHhhhcccccchhcccccHHHHHHHHHhhCcE-EEEcchhhhcc
Confidence 9999999999999999999999999986 667888999999999875 999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhH
Q psy14768 397 IEDSMNFLVDRIICSKRMEE 416 (452)
Q Consensus 397 v~~lf~~i~~~i~~~~~~~~ 416 (452)
|+..|++++..|++-....+
T Consensus 162 V~~~FeelveKIi~tp~l~~ 181 (209)
T KOG0080|consen 162 VQCCFEELVEKIIETPSLWE 181 (209)
T ss_pred HHHHHHHHHHHHhcCcchhh
Confidence 99999999999998777655
No 7
>KOG0094|consensus
Probab=100.00 E-value=3.8e-34 Score=253.71 Aligned_cols=167 Identities=32% Similarity=0.565 Sum_probs=156.7
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.+|++++|+.+||||||++||+-+.|...|.+|+|.||...++.+ .+..+.|++|||||||+|+.+.+.||+++.++
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l---~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEE---cCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 489999999999999999999999999999999999999999988 89999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
|+|||+++..||++...|++.+.+.. ...++-|+|||||.||.+ +++..++.+..+++++.. |+++||+.|.||.
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~---gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~-f~etsak~g~NVk 174 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRER---GSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAE-FIETSAKAGENVK 174 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhcc---CCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcE-EEEecccCCCCHH
Confidence 99999999999999999999998873 233477889999999999 999999999999999997 9999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q psy14768 399 DSMNFLVDRIICSKR 413 (452)
Q Consensus 399 ~lf~~i~~~i~~~~~ 413 (452)
++|..|+..+.....
T Consensus 175 ~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 175 QLFRRIAAALPGMEV 189 (221)
T ss_pred HHHHHHHHhccCccc
Confidence 999998888876655
No 8
>KOG0098|consensus
Probab=100.00 E-value=1.4e-33 Score=248.10 Aligned_cols=171 Identities=27% Similarity=0.537 Sum_probs=162.6
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...+|++++|+.+||||+|+.+|+.++|.+.+..|+|+++..+.+.+ +++.+++++|||+||+.|+++...||+.|.
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~i---d~k~IKlqiwDtaGqe~frsv~~syYr~a~ 80 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTI---DGKQIKLQIWDTAGQESFRSVTRSYYRGAA 80 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEE---cCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence 34589999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM 396 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n 396 (452)
++|||||+++.+||..+..|+..+.++ ..++..|+|+|||+||.. +.++.+++++|+++.++. |+++||+++.|
T Consensus 81 GalLVydit~r~sF~hL~~wL~D~rq~----~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLi-fmETSakt~~~ 155 (216)
T KOG0098|consen 81 GALLVYDITRRESFNHLTSWLEDARQH----SNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLI-FMETSAKTAEN 155 (216)
T ss_pred ceEEEEEccchhhHHHHHHHHHHHHHh----cCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCce-eehhhhhhhhh
Confidence 999999999999999999999999998 578899999999999988 999999999999999988 99999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhH
Q psy14768 397 IEDSMNFLVDRIICSKRMEE 416 (452)
Q Consensus 397 v~~lf~~i~~~i~~~~~~~~ 416 (452)
|+++|......+........
T Consensus 156 VEEaF~nta~~Iy~~~q~g~ 175 (216)
T KOG0098|consen 156 VEEAFINTAKEIYRKIQDGV 175 (216)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 99999999999998766543
No 9
>KOG0087|consensus
Probab=100.00 E-value=6e-33 Score=249.53 Aligned_cols=173 Identities=29% Similarity=0.557 Sum_probs=163.7
Q ss_pred CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS 316 (452)
Q Consensus 237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a 316 (452)
....+||+++|+++||||-|+.||..+.|..+..+|+|+++.+..+.+ +++.+..+||||||||+|+.+...||+.|
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~v---d~k~vkaqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNV---DGKTVKAQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceee---cCcEEEEeeecccchhhhccccchhhccc
Confidence 344689999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768 317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL 395 (452)
Q Consensus 317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~ 395 (452)
.+++||||++...+|+.+..|+.+++.+ ...+++|+|||||+||.. +.+..++++.++++.+.. |+|+||+++.
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdh----ad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~-f~EtSAl~~t 162 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDH----ADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLF-FLETSALDAT 162 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhc----CCCCeEEEEeecchhhhhccccchhhhHhHHHhcCce-EEEecccccc
Confidence 9999999999999999999999999999 778999999999999998 899999999999999988 9999999999
Q ss_pred cHHHHHHHHHHHHHHhhhhhHH
Q psy14768 396 MIEDSMNFLVDRIICSKRMEEE 417 (452)
Q Consensus 396 nv~~lf~~i~~~i~~~~~~~~~ 417 (452)
||+++|..++..|.+......-
T Consensus 163 NVe~aF~~~l~~I~~~vs~k~~ 184 (222)
T KOG0087|consen 163 NVEKAFERVLTEIYKIVSKKQL 184 (222)
T ss_pred cHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999987765543
No 10
>PRK03003 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=1.6e-32 Score=287.12 Aligned_cols=292 Identities=17% Similarity=0.138 Sum_probs=196.4
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCCC-----------------CCCc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPI-----------------QTPS 170 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~ 170 (452)
.+|+|||++|||||||||||++++++ ....+++++++....+.+......+.++.+.. ....
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 118 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTA 118 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhC
Confidence 68999999999999999999998876 56677777777666655555444455555532 1234
Q ss_pred eeEEEEcCCCCCchhhhhhh-------------cccccccccCCCccccce----eeeecccccCCccceeeeeeccccC
Q psy14768 171 YLILITGDSTVGKTSYVQGF-------------VQNKFLDNYKNTVGVDFS----TKLLSHKKYGGRPVKLQIWDIYCTL 233 (452)
Q Consensus 171 ~~Il~vgD~~vGkTsl~~r~-------------~~~~~~~~~~~~i~~~~~----~~~~~~~~id~~~~~l~i~d~~~~l 233 (452)
..|+||.|...|.+.....+ +.|+.|.........+++ ...+.++..++.++...+......+
T Consensus 119 D~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 119 DAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCcHHHHHHHHhhc
Confidence 58999999999977544332 235555422111111111 1223455555555443322222112
Q ss_pred CC------CCCCcccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc----
Q psy14768 234 SP------IQIPTYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ---- 302 (452)
Q Consensus 234 ~~------~~~~~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~---- 302 (452)
.. .....++|+++|++|||||||+|+|++..+ ..+..++++.+.....+.+ ++. .+.||||||+
T Consensus 199 ~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~---~~~--~~~l~DTaG~~~~~ 273 (472)
T PRK03003 199 PEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL---GGK--TWRFVDTAGLRRRV 273 (472)
T ss_pred ccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE---CCE--EEEEEECCCccccc
Confidence 11 123458999999999999999999998653 4666788888888777766 554 4579999995
Q ss_pred ------chhhhhh-hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCc---ccHH
Q psy14768 303 ------DRYICMS-RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQ---VEIN 372 (452)
Q Consensus 303 ------e~~~~~~-~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~---~~~e 372 (452)
+.|..++ ..+++++|++|+|||++++.+++++..+..... .++|+|||+||||+.+.. ...+
T Consensus 274 ~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~--------~~~piIiV~NK~Dl~~~~~~~~~~~ 345 (472)
T PRK03003 274 KQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE--------AGRALVLAFNKWDLVDEDRRYYLER 345 (472)
T ss_pred cccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH--------cCCCEEEEEECcccCChhHHHHHHH
Confidence 3444444 346899999999999999999998865433322 348999999999997511 1112
Q ss_pred HHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 373 ~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
++.+......+.+++++||++|.||+++|+.+.+.+.+...
T Consensus 346 ~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~ 386 (472)
T PRK03003 346 EIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDT 386 (472)
T ss_pred HHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 22222233344568999999999999999999998876654
No 11
>KOG0079|consensus
Probab=100.00 E-value=1.4e-32 Score=232.71 Aligned_cols=167 Identities=34% Similarity=0.654 Sum_probs=158.4
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
-++.+|+|+++||||+|+.+|..+.|..+|..|+|.|+..+++.+ ++..+.++||||||||+|+.+...|++..+++
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i---~G~~VkLqIwDtAGqErFrtitstyyrgthgv 84 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDI---NGDRVKLQIWDTAGQERFRTITSTYYRGTHGV 84 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeec---CCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence 468899999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
|+|||+++++||.++..|++++++.+ +..|-+|||||.|+.+ +.+..++++.|+..+++. +||+|||++.|++
T Consensus 85 ~vVYDVTn~ESF~Nv~rWLeei~~nc-----dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie-~FETSaKe~~NvE 158 (198)
T KOG0079|consen 85 IVVYDVTNGESFNNVKRWLEEIRNNC-----DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIE-LFETSAKENENVE 158 (198)
T ss_pred EEEEECcchhhhHhHHHHHHHHHhcC-----ccccceecccCCCCccceeeehHHHHHHHHhcCch-heehhhhhcccch
Confidence 99999999999999999999999874 5889999999999998 788999999999999998 9999999999999
Q ss_pred HHHHHHHHHHHHhhhhh
Q psy14768 399 DSMNFLVDRIICSKRME 415 (452)
Q Consensus 399 ~lf~~i~~~i~~~~~~~ 415 (452)
.+|.-|.++++..+..+
T Consensus 159 ~mF~cit~qvl~~k~r~ 175 (198)
T KOG0079|consen 159 AMFHCITKQVLQAKLRE 175 (198)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999887433
No 12
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.98 E-value=7.4e-32 Score=279.66 Aligned_cols=291 Identities=16% Similarity=0.122 Sum_probs=195.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCCC-----------------CCCce
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPI-----------------QTPSY 171 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 171 (452)
||+|||++|||||||||||++++.+ ....++++++.....+.+......+.|+.+.. .....
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 5899999999999999999998865 55667778888777777766666666666642 12334
Q ss_pred eEEEEcCCCCCchhhhhhh-------------cccccccccCCCcccccee----eeecccccCCccceeeeeeccccCC
Q psy14768 172 LILITGDSTVGKTSYVQGF-------------VQNKFLDNYKNTVGVDFST----KLLSHKKYGGRPVKLQIWDIYCTLS 234 (452)
Q Consensus 172 ~Il~vgD~~vGkTsl~~r~-------------~~~~~~~~~~~~i~~~~~~----~~~~~~~id~~~~~l~i~d~~~~l~ 234 (452)
.|+||.|+..|.+.....+ +.|+.|.........+++. .++.++..++.++...+......+.
T Consensus 81 ~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 81 VILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELLP 160 (429)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcC
Confidence 7999999999988764432 2244443222111112211 2334444444444322221111121
Q ss_pred C------CCCCcccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh
Q psy14768 235 P------IQIPTYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC 307 (452)
Q Consensus 235 ~------~~~~~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~ 307 (452)
. .....++++++|.+|+|||||+|+++++. ......++++.+.....+.. ++. .+.+|||||++++..
T Consensus 161 ~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~---~~~--~~~liDT~G~~~~~~ 235 (429)
T TIGR03594 161 EEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFER---NGK--KYLLIDTAGIRRKGK 235 (429)
T ss_pred cccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEE---CCc--EEEEEECCCcccccc
Confidence 1 12335899999999999999999999854 44566677777777666655 443 688999999754432
Q ss_pred ----------hh-hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHH-H
Q psy14768 308 ----------MS-RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEI-E 375 (452)
Q Consensus 308 ----------~~-~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~-~ 375 (452)
++ ..+++.+|++|+|+|++++.++++...+...... ++|+++|+||||+.+.....++. .
T Consensus 236 ~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~--------~~~iiiv~NK~Dl~~~~~~~~~~~~ 307 (429)
T TIGR03594 236 VTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEA--------GKALVIVVNKWDLVKDEKTREEFKK 307 (429)
T ss_pred chhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc--------CCcEEEEEECcccCCCHHHHHHHHH
Confidence 22 3468999999999999999998887655444333 38999999999997311112222 2
Q ss_pred HHHHH---cCCCEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 376 AVCHQ---YNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 376 ~~~~~---~~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
.+... .+..+++++||++|.|++++|+++.+.+.....
T Consensus 308 ~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~ 348 (429)
T TIGR03594 308 ELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENANR 348 (429)
T ss_pred HHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence 22222 344569999999999999999999998776543
No 13
>KOG0093|consensus
Probab=99.97 E-value=1.1e-31 Score=226.98 Aligned_cols=167 Identities=33% Similarity=0.623 Sum_probs=158.2
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.+|+.|+|.+.+|||||+.+++++.|...+..|.|.++..+++-- ..+.+++++|||+|||+|+.+...+|+.|+++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr---~~kRiklQiwDTagqEryrtiTTayyRgamgf 97 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYR---SDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 97 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeee---cccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence 469999999999999999999999999999999999999987766 77889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
|||||+++.+||..++.|..+|..+ ...+.|+|||+||||+.+ +.++.|.++.+++++|+. |||+|||.+.||+
T Consensus 98 iLmyDitNeeSf~svqdw~tqIkty----sw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfe-fFEtSaK~NinVk 172 (193)
T KOG0093|consen 98 ILMYDITNEESFNSVQDWITQIKTY----SWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFE-FFETSAKENINVK 172 (193)
T ss_pred EEEEecCCHHHHHHHHHHHHHheee----eccCceEEEEecccCCccceeeeHHHHHHHHHHhChH-HhhhcccccccHH
Confidence 9999999999999999999999998 688999999999999987 899999999999999998 9999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q psy14768 399 DSMNFLVDRIICSKRM 414 (452)
Q Consensus 399 ~lf~~i~~~i~~~~~~ 414 (452)
++|+.++..|-+.+..
T Consensus 173 ~~Fe~lv~~Ic~kmse 188 (193)
T KOG0093|consen 173 QVFERLVDIICDKMSE 188 (193)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999998876654
No 14
>KOG0091|consensus
Probab=99.97 E-value=9.5e-32 Score=231.30 Aligned_cols=205 Identities=31% Similarity=0.548 Sum_probs=172.2
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++++++|++-||||||+..|...++..-..||+|.|+....+++. .+..+++++|||||||+|+++...||+++-+
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~--pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELR--PGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcC--CCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 35789999999999999999999999998889999999998888775 7888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+++|||++|..||+.++.|+.+...+.. ....+-+.|||+|+||.. ++++.+++++++...+.. |+||||++|.||
T Consensus 85 vllvyditnr~sfehv~~w~~ea~m~~q--~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~-FVETSak~g~NV 161 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVENWVKEAAMATQ--GPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMA-FVETSAKNGCNV 161 (213)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHhcC--CCCeeEEEEeccccchhhhccccHHHHHHHHHhcCce-EEEecccCCCcH
Confidence 9999999999999999999999887742 123344679999999988 999999999999999998 999999999999
Q ss_pred HHHHHHHHHHHHHhhhh-hHHHHhhccccccccccccCCCCCCcCCCCCCCCCccC
Q psy14768 398 EDSMNFLVDRIICSKRM-EEEAVERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452 (452)
Q Consensus 398 ~~lf~~i~~~i~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~k~~~~c~~ 452 (452)
++.|..+.+.+...-.+ +......+-..+. +++.+--+..+.++....|||
T Consensus 162 eEAF~mlaqeIf~~i~qGeik~edgw~gvKS----srpn~i~~s~~~~~P~k~c~C 213 (213)
T KOG0091|consen 162 EEAFDMLAQEIFQAIQQGEIKLEDGWGGVKS----SRPNQIPRSPSRKQPSKPCQC 213 (213)
T ss_pred HHHHHHHHHHHHHHHhcCceeeeeccccccc----cCCCcCCCcccccCCCCCCCC
Confidence 99999999999888766 3333333333322 333333333446777777877
No 15
>KOG0095|consensus
Probab=99.97 E-value=2.3e-31 Score=225.56 Aligned_cols=201 Identities=28% Similarity=0.488 Sum_probs=172.5
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
-+||+++|..|||||+|+++|...-|.+...+|+|.||..+++.+ ++.+++++||||+||++|+++...||+.|+++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev---~gekiklqiwdtagqerfrsitqsyyrsahal 83 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEV---NGEKIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEE---CCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence 489999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
|||||++...||+-+..|+.+++++ .+.++--||||||.|+.+ +++.....++|.+.. ...|.|+||++.+||+
T Consensus 84 ilvydiscqpsfdclpewlreie~y----an~kvlkilvgnk~d~~drrevp~qigeefs~~q-dmyfletsakea~nve 158 (213)
T KOG0095|consen 84 ILVYDISCQPSFDCLPEWLREIEQY----ANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQ-DMYFLETSAKEADNVE 158 (213)
T ss_pred EEEEecccCcchhhhHHHHHHHHHH----hhcceEEEeeccccchhhhhhhhHHHHHHHHHhh-hhhhhhhcccchhhHH
Confidence 9999999999999999999999999 566677899999999998 688888888888874 4448999999999999
Q ss_pred HHHHHHHHHHHHhhhhhHHHHhhccccccccccccCCCCCCcCC--CCCCCCCcc
Q psy14768 399 DSMNFLVDRIICSKRMEEEAVERKSSIRLSEETLRDDQPKKLVP--ADKVSTYCW 451 (452)
Q Consensus 399 ~lf~~i~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~k~~~~c~ 451 (452)
++|..++-.+....+.... ....+....+.+ .+.++|++.. +....+||.
T Consensus 159 ~lf~~~a~rli~~ar~~d~--v~~~~a~a~~~~-seg~si~l~s~aqt~~~~cc~ 210 (213)
T KOG0095|consen 159 KLFLDLACRLISEARQNDL--VNNVSAPAPNSS-SEGKSIKLISYAQTQLLTCCN 210 (213)
T ss_pred HHHHHHHHHHHHHHHhccc--hhhccccCcccc-CCCCcccchhHHHHHHhcccc
Confidence 9999999888876654433 222233333322 5667787776 666677774
No 16
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=2.6e-30 Score=240.90 Aligned_cols=173 Identities=44% Similarity=0.834 Sum_probs=153.2
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecC-CeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-GRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~-~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
+||+++|++|||||||+++|+++.+...+.+|++.++....+.+ + +..+.+.||||+|+++|..++..+++++|++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~---~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ 77 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEW---DPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGA 77 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEE---CCCCEEEEEEEECCCchhhhhhHHHHhCCCCEE
Confidence 58999999999999999999999988889999999988777776 6 7789999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
|+|||++++.+|+.+..|+..+..........++|++||+||+|+.+ +.+..+++.++++..++..|+++||++|.||+
T Consensus 78 ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~ 157 (201)
T cd04107 78 IIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIE 157 (201)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHH
Confidence 99999999999999999999887653222346789999999999975 67788899999999997679999999999999
Q ss_pred HHHHHHHHHHHHhhhhhH
Q psy14768 399 DSMNFLVDRIICSKRMEE 416 (452)
Q Consensus 399 ~lf~~i~~~i~~~~~~~~ 416 (452)
++|+++++.+........
T Consensus 158 e~f~~l~~~l~~~~~~~~ 175 (201)
T cd04107 158 EAMRFLVKNILANDKNLQ 175 (201)
T ss_pred HHHHHHHHHHHHhchhhH
Confidence 999999999876644333
No 17
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.97 E-value=7.5e-30 Score=237.81 Aligned_cols=165 Identities=30% Similarity=0.577 Sum_probs=149.3
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII 321 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl 321 (452)
.|+++|..+||||||+++|..+.|...+.+|++.++....+.+ ++..+.+++|||+|+++|..++..+++++|++|+
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~---~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIl 78 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVEL---RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIIL 78 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEE---CCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEE
Confidence 5889999999999999999999999989999999998888887 8888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHHH
Q psy14768 322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS 400 (452)
Q Consensus 322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~l 400 (452)
|||++++.||+++..|+..+... ...+.|++||+||+|+.+ +++..++++++++++....|++|||++|.||+++
T Consensus 79 VfDvtd~~Sf~~l~~w~~~i~~~----~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~ 154 (202)
T cd04120 79 VYDITKKETFDDLPKWMKMIDKY----ASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEI 154 (202)
T ss_pred EEECcCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHH
Confidence 99999999999999999988766 356799999999999976 7888889999998863334999999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy14768 401 MNFLVDRIICSKR 413 (452)
Q Consensus 401 f~~i~~~i~~~~~ 413 (452)
|+++++.+.+...
T Consensus 155 F~~l~~~~~~~~~ 167 (202)
T cd04120 155 FLKLVDDILKKMP 167 (202)
T ss_pred HHHHHHHHHHhCc
Confidence 9999998876533
No 18
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.97 E-value=2.5e-30 Score=268.75 Aligned_cols=292 Identities=16% Similarity=0.122 Sum_probs=193.5
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCCCC-----------------CCc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ-----------------TPS 170 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 170 (452)
++|+|||++|||||||+|++++.+.+ ....+++++++....+.+......+.++.+... ...
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 58999999999999999999998865 455677777777777766666666666665543 223
Q ss_pred eeEEEEcCCCCCchhhhhhh-------------cccccccccCCCcccccee----eeecccccCCccceeeeeeccccC
Q psy14768 171 YLILITGDSTVGKTSYVQGF-------------VQNKFLDNYKNTVGVDFST----KLLSHKKYGGRPVKLQIWDIYCTL 233 (452)
Q Consensus 171 ~~Il~vgD~~vGkTsl~~r~-------------~~~~~~~~~~~~i~~~~~~----~~~~~~~id~~~~~l~i~d~~~~l 233 (452)
..++||+|+..|.+.....+ +-|+.|.........+++. ..+.++..++.++...+.......
T Consensus 82 d~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 82 DVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhC
Confidence 47999999999888654322 1244443211111111111 133334444444332211111101
Q ss_pred C-----CCCCCcccEEEeeecccCCcceeeecccc-ccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch---
Q psy14768 234 S-----PIQIPTYPILITGDSTVGKTSYVQGFVQN-KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR--- 304 (452)
Q Consensus 234 ~-----~~~~~~~kI~ivG~~nvGKSSLin~l~~~-~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~--- 304 (452)
. ......++|+++|.+|+|||||+|++++. .......++++.+.....+.. ++ ..+.+|||||..+
T Consensus 162 ~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~---~~--~~~~lvDT~G~~~~~~ 236 (435)
T PRK00093 162 PEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFER---DG--QKYTLIDTAGIRRKGK 236 (435)
T ss_pred CccccccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEE---CC--eeEEEEECCCCCCCcc
Confidence 0 11234689999999999999999999974 456677788888777666655 44 4577899999643
Q ss_pred -------hhhhh-hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccH---HH
Q psy14768 305 -------YICMS-RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEI---NE 373 (452)
Q Consensus 305 -------~~~~~-~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~---e~ 373 (452)
|..++ ..+++.+|++|+|+|++++.+.++...+....... +|++||+||||+.+..... ++
T Consensus 237 ~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~--------~~~ivv~NK~Dl~~~~~~~~~~~~ 308 (435)
T PRK00093 237 VTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAG--------RALVIVVNKWDLVDEKTMEEFKKE 308 (435)
T ss_pred hhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcC--------CcEEEEEECccCCCHHHHHHHHHH
Confidence 22222 34788999999999999999998876654444433 8999999999997521111 12
Q ss_pred HHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 374 IEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 374 ~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
+..........+++++||++|.|++++|+.+.+.+...+.
T Consensus 309 ~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~~ 348 (435)
T PRK00093 309 LRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENANR 348 (435)
T ss_pred HHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHcC
Confidence 2222223345569999999999999999999988766543
No 19
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.97 E-value=2.1e-30 Score=283.34 Aligned_cols=292 Identities=16% Similarity=0.126 Sum_probs=195.2
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCCCC-----------------CC
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ-----------------TP 169 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~ 169 (452)
..+|+|||+||||||||||++++.+++ ....+++++++......+....+...++.+... ..
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 354 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSL 354 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHh
Confidence 468999999999999999999998775 556677777776666655555555555555331 23
Q ss_pred ceeEEEEcCCCCCchhhhhhhc-------------ccccccccCCCcccccee----eeecccccCCccceeeeeecccc
Q psy14768 170 SYLILITGDSTVGKTSYVQGFV-------------QNKFLDNYKNTVGVDFST----KLLSHKKYGGRPVKLQIWDIYCT 232 (452)
Q Consensus 170 ~~~Il~vgD~~vGkTsl~~r~~-------------~~~~~~~~~~~i~~~~~~----~~~~~~~id~~~~~l~i~d~~~~ 232 (452)
...++||.|+..|.+.....++ -|+.|.........+++. ..+.++..++.++...+......
T Consensus 355 aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~~ 434 (712)
T PRK09518 355 ADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGVGDLLDEALDS 434 (712)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCCchHHHHHHHHh
Confidence 3589999999999887665432 245543221111112211 23345555565554332222111
Q ss_pred CCC----C----CCCcccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc
Q psy14768 233 LSP----I----QIPTYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303 (452)
Q Consensus 233 l~~----~----~~~~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e 303 (452)
+.. . ....++|+++|++|||||||+|++++... .....++++.+.....+.+ ++. .+.||||+|+.
T Consensus 435 l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~---~~~--~~~liDTaG~~ 509 (712)
T PRK09518 435 LKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEI---DGE--DWLFIDTAGIK 509 (712)
T ss_pred cccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEE---CCC--EEEEEECCCcc
Confidence 111 0 12358999999999999999999998653 4455677777887766666 554 46699999963
Q ss_pred ----------hhhhhh-hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHH
Q psy14768 304 ----------RYICMS-RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372 (452)
Q Consensus 304 ----------~~~~~~-~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e 372 (452)
.|..++ ..+++.+|++|+|+|++++.+++++..+...... ++|++||+||||+.+.. ..+
T Consensus 510 ~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~--------~~piIiV~NK~DL~~~~-~~~ 580 (712)
T PRK09518 510 RRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDA--------GRALVLVFNKWDLMDEF-RRQ 580 (712)
T ss_pred cCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc--------CCCEEEEEEchhcCChh-HHH
Confidence 233333 3457899999999999999999998765443332 48999999999997521 112
Q ss_pred HHH-HHHH---HcCCCEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 373 EIE-AVCH---QYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 373 ~~~-~~~~---~~~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
..+ .+.. ...+.+.+++||++|.||+++|+.+.+.+.+...
T Consensus 581 ~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~ 625 (712)
T PRK09518 581 RLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQ 625 (712)
T ss_pred HHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 222 2222 2344557999999999999999999998876543
No 20
>KOG0086|consensus
Probab=99.97 E-value=2.5e-30 Score=220.10 Aligned_cols=170 Identities=29% Similarity=0.589 Sum_probs=160.8
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
.-+|++++|+.|.|||+|+.+|+.+.|-.+...|+|.+|..+.+.+ .++.++++||||+|||+|++....||+.|-+
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinV---GgK~vKLQIWDTAGQErFRSVtRsYYRGAAG 84 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNV---GGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 84 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeee---cCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 4589999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
.+||||+++..||+.+..|+..++.. ..+++-+||+|||.||.+ +++...++..|+++.... |.|+||++|.||
T Consensus 85 AlLVYD~TsrdsfnaLtnWL~DaR~l----As~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~-flETSa~TGeNV 159 (214)
T KOG0086|consen 85 ALLVYDITSRDSFNALTNWLTDARTL----ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELM-FLETSALTGENV 159 (214)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHhh----CCCcEEEEEeCChhhcChhhhhhHHHHHhhhccccee-eeeecccccccH
Confidence 99999999999999999999999888 778899999999999988 999999999999999987 999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhH
Q psy14768 398 EDSMNFLVDRIICSKRMEE 416 (452)
Q Consensus 398 ~~lf~~i~~~i~~~~~~~~ 416 (452)
++.|-...+.|+.+-...+
T Consensus 160 EEaFl~c~~tIl~kIE~GE 178 (214)
T KOG0086|consen 160 EEAFLKCARTILNKIESGE 178 (214)
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 9999999999998765544
No 21
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.97 E-value=6.1e-30 Score=236.09 Aligned_cols=165 Identities=28% Similarity=0.523 Sum_probs=150.9
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..+||+++|..+||||||+.+|..+.+...+.++++.++....+.+ ++..+.+.+|||+|+++|..++..+++++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~---~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ 81 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILL---DGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG 81 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEE---CCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 3589999999999999999999998888888889999988777777 8888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|||||++++.||+.+..|+.++... ..+.|+||||||.|+.+ +.+..++++.+++..++. |++|||++|.||
T Consensus 82 illVfD~t~~~Sf~~~~~w~~~i~~~-----~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~-~~e~SAk~g~~V 155 (189)
T cd04121 82 IILVYDITNRWSFDGIDRWIKEIDEH-----APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMT-FFEVSPLCNFNI 155 (189)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh-----CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCE-EEEecCCCCCCH
Confidence 99999999999999999999999765 25799999999999976 788899999999999875 999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy14768 398 EDSMNFLVDRIICSK 412 (452)
Q Consensus 398 ~~lf~~i~~~i~~~~ 412 (452)
+++|+++++.+...+
T Consensus 156 ~~~F~~l~~~i~~~~ 170 (189)
T cd04121 156 TESFTELARIVLMRH 170 (189)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999998886543
No 22
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=1.5e-29 Score=239.99 Aligned_cols=164 Identities=21% Similarity=0.338 Sum_probs=147.3
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..+||+++|+++||||||+++|+.+.|...+.+|++.++. ..+.+ ++..+.+.||||+|+++|..++..+|+++|+
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~---~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLET---EEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEE---CCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 4589999999999999999999999999999999987774 35666 8899999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCC
Q psy14768 319 CIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFM 384 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~-~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~ 384 (452)
+|||||+++..||+.+ ..|+..+... .++.|+||||||.||.+ +.+..++++++++++++.
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~-----~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~ 162 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDY-----CPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAE 162 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHh-----CCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCC
Confidence 9999999999999985 7899998875 24689999999999853 468899999999999986
Q ss_pred EEEEecCCCCc-cHHHHHHHHHHHHHHh
Q psy14768 385 SWIEVSSKEHL-MIEDSMNFLVDRIICS 411 (452)
Q Consensus 385 ~~~evSAktg~-nv~~lf~~i~~~i~~~ 411 (452)
.|+||||++|. ||+++|..++..+.+.
T Consensus 163 ~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 163 VYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred EEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 69999999997 8999999999988764
No 23
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.96 E-value=2.9e-29 Score=230.28 Aligned_cols=163 Identities=24% Similarity=0.416 Sum_probs=146.4
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..+||+++|+++||||||+++|+.+.+...+.||++.++. ..+.+ ++..+.+.||||+|+++|..++..+++++|+
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~---~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~ 79 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEI---DTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 79 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEE---CCEEEEEEEEECCCchhhHhhhhhhcCCCCE
Confidence 3589999999999999999999999999999999987664 45666 8889999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCC
Q psy14768 319 CIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFM 384 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~-~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~ 384 (452)
+|||||++++.||+.+ ..|+..+... .++.|++|||||.||.+ +.+..++++++++++++.
T Consensus 80 ~ilvyDit~~~Sf~~~~~~w~~~i~~~-----~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~ 154 (182)
T cd04172 80 VLICFDISRPETLDSVLKKWKGEIQEF-----CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAA 154 (182)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHH-----CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCC
Confidence 9999999999999997 7899999876 25689999999999853 358899999999999976
Q ss_pred EEEEecCCCCcc-HHHHHHHHHHHHHH
Q psy14768 385 SWIEVSSKEHLM-IEDSMNFLVDRIIC 410 (452)
Q Consensus 385 ~~~evSAktg~n-v~~lf~~i~~~i~~ 410 (452)
+|+||||++|.| |+++|..+++.+++
T Consensus 155 ~~~E~SAk~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 155 TYIECSALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred EEEECCcCCCCCCHHHHHHHHHHHHhc
Confidence 699999999998 99999999997654
No 24
>KOG0088|consensus
Probab=99.96 E-value=3.1e-30 Score=220.75 Aligned_cols=169 Identities=31% Similarity=0.551 Sum_probs=158.1
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...+|++++|..-||||||+-+++.++|......|+...|..+.+.+ .+....+.||||+||++|..+-+.||+.++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~---ed~ra~L~IWDTAGQErfHALGPIYYRgSn 87 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNV---EDCRADLHIWDTAGQERFHALGPIYYRGSN 87 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccccc---ccceeeeeeeeccchHhhhccCceEEeCCC
Confidence 34689999999999999999999999999999999999999999888 788899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM 396 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n 396 (452)
++|||||++|..||+.++.|..+++.. ....+-++|||||+||.+ +.++.++++.+++..|.. |+++||+.+.+
T Consensus 88 GalLVyDITDrdSFqKVKnWV~Elr~m----lGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~-y~eTSAk~N~G 162 (218)
T KOG0088|consen 88 GALLVYDITDRDSFQKVKNWVLELRTM----LGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGAL-YMETSAKDNVG 162 (218)
T ss_pred ceEEEEeccchHHHHHHHHHHHHHHHH----hCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchh-heecccccccC
Confidence 999999999999999999999999998 456688999999999988 999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy14768 397 IEDSMNFLVDRIICSKRM 414 (452)
Q Consensus 397 v~~lf~~i~~~i~~~~~~ 414 (452)
|.++|+.+.+.+++...+
T Consensus 163 i~elFe~Lt~~MiE~~s~ 180 (218)
T KOG0088|consen 163 ISELFESLTAKMIEHSSQ 180 (218)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999999988876543
No 25
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.96 E-value=5e-29 Score=227.48 Aligned_cols=160 Identities=29% Similarity=0.496 Sum_probs=144.2
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+|++++|.++||||||+.+|+.+.|...+.+|++.++. ..+.. ++..+.+.||||+|+++|..++..+++++|++|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~---~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~i 77 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSV---DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 77 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEE---CCEEEEEEEEECCCCccccccchhhcCCCcEEE
Confidence 68999999999999999999999999899999987664 45556 888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C----------cccHHHHHHHHHHcCCCEEEE
Q psy14768 321 IMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R----------QVEINEIEAVCHQYNFMSWIE 388 (452)
Q Consensus 321 lV~D~t~~~S~~~~-~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~----------~~~~e~~~~~~~~~~~~~~~e 388 (452)
||||+++..||+++ ..|+..+... ..+.|++|||||+||.+ + .+..++++++++.++...|+|
T Consensus 78 lvyd~~~~~Sf~~~~~~w~~~i~~~-----~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E 152 (176)
T cd04133 78 LAFSLISRASYENVLKKWVPELRHY-----APNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIE 152 (176)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEE
Confidence 99999999999998 6899998765 24799999999999965 2 478899999999999866999
Q ss_pred ecCCCCccHHHHHHHHHHHHH
Q psy14768 389 VSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 389 vSAktg~nv~~lf~~i~~~i~ 409 (452)
|||++|.||+++|+.+++.++
T Consensus 153 ~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 153 CSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred CCCCcccCHHHHHHHHHHHHh
Confidence 999999999999999998764
No 26
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.96 E-value=8.3e-29 Score=233.32 Aligned_cols=167 Identities=27% Similarity=0.407 Sum_probs=148.2
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCC-eeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG-RPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~-~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
+||+++|++|||||||+++|.++.+...+.+|++.++....+.+ ++ ..+.+.||||+|++.|..++..+++++|++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~---~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~i 77 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTL---PGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAV 77 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEe---CCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEE
Confidence 58999999999999999999999999999999999988777776 43 578999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
|+|||++++.||+++..|+..+.+... ....+.|++||+||+|+.+ +.+..++..++++.++.. ++++||++|.||+
T Consensus 78 ilV~D~t~~~s~~~~~~w~~~l~~~~~-~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~-~~~iSAktg~gv~ 155 (215)
T cd04109 78 FLVYDVTNSQSFENLEDWYSMVRKVLK-SSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGME-SCLVSAKTGDRVN 155 (215)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcc-ccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEECCCCCCHH
Confidence 999999999999999999999987631 1124578999999999976 778888999999998865 9999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy14768 399 DSMNFLVDRIICSK 412 (452)
Q Consensus 399 ~lf~~i~~~i~~~~ 412 (452)
++|+++++.+....
T Consensus 156 ~lf~~l~~~l~~~~ 169 (215)
T cd04109 156 LLFQQLAAELLGVD 169 (215)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988753
No 27
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=1.2e-28 Score=231.51 Aligned_cols=206 Identities=32% Similarity=0.550 Sum_probs=164.8
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.+||+++|++|||||||+++|+++.+...+.+|++.++....+.+. ++..+.+++|||+|+++|..++..+++++|++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 79 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIE--PGVRIKLQLWDTAGQERFRSITRSYYRNSVGV 79 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEEC--CCCEEEEEEEeCCcchhHHHHHHHHhcCCcEE
Confidence 4799999999999999999999988888888999998887777652 35678999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
|+|||++++.||+++..|+..+.... .....|++||+||+|+.+ +.+..++..++++.++. +|+++||++|.||+
T Consensus 80 ilv~D~~~~~Sf~~l~~~~~~i~~~~---~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sak~g~~v~ 155 (211)
T cd04111 80 LLVFDITNRESFEHVHDWLEEARSHI---QPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGM-KYIETSARTGDNVE 155 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCeEEEEEEccccccccccCHHHHHHHHHHhCC-EEEEEeCCCCCCHH
Confidence 99999999999999999999887652 234578999999999977 67888899999999885 49999999999999
Q ss_pred HHHHHHHHHHHHhhhhhH-HHHhhcccccccccccc--CCCCCCcCCCCCCCCCcc
Q psy14768 399 DSMNFLVDRIICSKRMEE-EAVERKSSIRLSEETLR--DDQPKKLVPADKVSTYCW 451 (452)
Q Consensus 399 ~lf~~i~~~i~~~~~~~~-~~~~~~~s~~~~~~~~~--~~~~~~~~~~~k~~~~c~ 451 (452)
++|+++++.+.+.....+ .....+.+.+.....++ ...-+..+-..-+++|||
T Consensus 156 e~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
T cd04111 156 EAFELLTQEIYERIKRGELCALDGWDGVKSGFPAGRAFSLEERSPTFASPEKSCCC 211 (211)
T ss_pred HHHHHHHHHHHHHhhcCCCCccccccccccCCCcccccccCcccccccCCCCCCCC
Confidence 999999998887754433 34444444444443333 111222222555667665
No 28
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.96 E-value=1.2e-28 Score=232.43 Aligned_cols=161 Identities=24% Similarity=0.433 Sum_probs=138.2
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|.++||||||+++|+.+.+.. +.+|++.++....+ ..+.+.||||+|++.|..++..+++++|++|
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~-------~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~I 72 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW-------GPYNISIWDTAGREQFHGLGSMYCRGAAAVI 72 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe-------eEEEEEEEeCCCcccchhhHHHHhccCCEEE
Confidence 589999999999999999999988864 57888877654432 4578999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--------------------CcccHHHHHHHHHH
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--------------------RQVEINEIEAVCHQ 380 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--------------------~~~~~e~~~~~~~~ 380 (452)
+|||+++..||+++..|+..+.+. ...++|+|||+||+|+.+ +++..++++.++++
T Consensus 73 lV~Dvt~~~Sf~~l~~~~~~l~~~----~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~ 148 (220)
T cd04126 73 LTYDVSNVQSLEELEDRFLGLTDT----ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKR 148 (220)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHH
Confidence 999999999999999887777654 345789999999999853 67888999999998
Q ss_pred cCC-------------CEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 381 YNF-------------MSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 381 ~~~-------------~~~~evSAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
++. .+|+||||++|.||+++|..+++.+.....
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~ 194 (220)
T cd04126 149 INKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLIL 194 (220)
T ss_pred hCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 762 359999999999999999999998875433
No 29
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=1.1e-28 Score=225.73 Aligned_cols=160 Identities=23% Similarity=0.406 Sum_probs=143.7
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|+++||||||+++|.++.+...+.+|++.++. ..+.+ ++..+.+.||||+|+++|..++..+++++|++|
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~---~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~i 77 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEI---DEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVL 77 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEE---CCEEEEEEEEECCCchhhhhcchhhcCCCCEEE
Confidence 68999999999999999999999999999999987764 45666 888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCCEE
Q psy14768 321 IMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFMSW 386 (452)
Q Consensus 321 lV~D~t~~~S~~~~-~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~~~ 386 (452)
+|||++++.||+++ ..|+..+... .++.|++|||||.||.+ +.+..+++++++++++...|
T Consensus 78 lvfdit~~~Sf~~~~~~w~~~i~~~-----~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~ 152 (178)
T cd04131 78 ICFDISRPETLDSVLKKWRGEIQEF-----CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIY 152 (178)
T ss_pred EEEECCChhhHHHHHHHHHHHHHHH-----CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEE
Confidence 99999999999996 7899998876 25789999999999853 35888999999999998669
Q ss_pred EEecCCCCcc-HHHHHHHHHHHHH
Q psy14768 387 IEVSSKEHLM-IEDSMNFLVDRII 409 (452)
Q Consensus 387 ~evSAktg~n-v~~lf~~i~~~i~ 409 (452)
+||||++|.| |+++|..+++..+
T Consensus 153 ~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 153 LECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred EECccCcCCcCHHHHHHHHHHHHh
Confidence 9999999995 9999999999654
No 30
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.96 E-value=1.7e-28 Score=221.24 Aligned_cols=162 Identities=29% Similarity=0.613 Sum_probs=147.4
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|++|||||||++++.++.+...+.++++.++....+.. ++..+.+.+|||+|+++|..++..+++++|++|
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 79 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV---NGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 79 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEE---CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 79999999999999999999999998888889998887777777 888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~ 399 (452)
+|||++++.+|+.+..|+..+... ...+.|++||+||+|+.+ +.+..+++.++++..++. |+++||++|.||++
T Consensus 80 lv~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~e 154 (166)
T cd04122 80 MVYDITRRSTYNHLSSWLTDARNL----TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLL-FLECSAKTGENVED 154 (166)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCE-EEEEECCCCCCHHH
Confidence 999999999999999999988765 346789999999999977 677888999999988875 99999999999999
Q ss_pred HHHHHHHHHHH
Q psy14768 400 SMNFLVDRIIC 410 (452)
Q Consensus 400 lf~~i~~~i~~ 410 (452)
+|.++++.+.+
T Consensus 155 ~f~~l~~~~~~ 165 (166)
T cd04122 155 AFLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHHhh
Confidence 99999987754
No 31
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.96 E-value=2.2e-28 Score=230.79 Aligned_cols=166 Identities=22% Similarity=0.403 Sum_probs=145.5
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|+++||||||+++|..+.|...+.||++.++. ..+.+ ++..+.+.||||+|++.|..+++.+|+++|++|
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~---~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~il 77 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEI---DKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVL 77 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEE---CCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEE
Confidence 68999999999999999999999999999999987764 45566 888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCCEE
Q psy14768 321 IMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFMSW 386 (452)
Q Consensus 321 lV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~~~ 386 (452)
+|||++++.||+.+. .|..++... ..+.|+||||||.||.+ ..+..+++..+++.++...|
T Consensus 78 lvfdis~~~Sf~~i~~~w~~~~~~~-----~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y 152 (222)
T cd04173 78 ICFDISRPETLDSVLKKWQGETQEF-----CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSY 152 (222)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEE
Confidence 999999999999994 577766554 36799999999999953 13778899999999998679
Q ss_pred EEecCCCCcc-HHHHHHHHHHHHHHhhhhh
Q psy14768 387 IEVSSKEHLM-IEDSMNFLVDRIICSKRME 415 (452)
Q Consensus 387 ~evSAktg~n-v~~lf~~i~~~i~~~~~~~ 415 (452)
+||||+++.+ |+++|..++...+......
T Consensus 153 ~E~SAk~~~~~V~~~F~~~~~~~~~~~~~~ 182 (222)
T cd04173 153 VECSSRSSERSVRDVFHVATVASLGRGHRQ 182 (222)
T ss_pred EEcCCCcCCcCHHHHHHHHHHHHHhccCCc
Confidence 9999999985 9999999999887755433
No 32
>PLN03110 Rab GTPase; Provisional
Probab=99.96 E-value=3.7e-28 Score=229.09 Aligned_cols=167 Identities=30% Similarity=0.575 Sum_probs=151.3
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..+||+++|+++||||||+++|.+..+...+.+|++.++....+.+ ++..+.+.||||+|+++|..++..+++.+++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~---~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV---EGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE---CCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 3589999999999999999999999888888899999998888887 8888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|+|||++++.+|+.+..|+..+... ...++|++||+||+|+.+ +.+..++...+...+++. |+++||++|.|+
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~----~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~-~~e~SA~~g~~v 162 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDH----ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLS-FLETSALEATNV 162 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHh----CCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence 99999999999999999999988876 345799999999999976 677788889998888765 999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy14768 398 EDSMNFLVDRIICSKR 413 (452)
Q Consensus 398 ~~lf~~i~~~i~~~~~ 413 (452)
+++|++++..+.+...
T Consensus 163 ~~lf~~l~~~i~~~~~ 178 (216)
T PLN03110 163 EKAFQTILLEIYHIIS 178 (216)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999887543
No 33
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=3.6e-28 Score=224.45 Aligned_cols=167 Identities=25% Similarity=0.492 Sum_probs=143.4
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII 321 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl 321 (452)
||+++|.+|||||||+++|+.+.+...+.++++..+. ..+.+ ++..+.+.||||+|+++|..++..+++.+|++|+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~il 76 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVV---DGQPCMLEVLDTAGQEEYTALRDQWIREGEGFIL 76 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEE---CCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEE
Confidence 6899999999999999999998888888888876553 34455 7788899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHHH
Q psy14768 322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS 400 (452)
Q Consensus 322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~l 400 (452)
|||+++..||+.+..|+..+..... ....++|++||+||+|+.+ +.+..++..++++.+++. |+++||++|.||+++
T Consensus 77 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SAk~~~~v~~l 154 (190)
T cd04144 77 VYSITSRSTFERVERFREQIQRVKD-ESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCE-FIEASAKTNVNVERA 154 (190)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhc-ccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCE-EEEecCCCCCCHHHH
Confidence 9999999999999999988876521 1135789999999999976 677777888888888875 999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q psy14768 401 MNFLVDRIICSKRM 414 (452)
Q Consensus 401 f~~i~~~i~~~~~~ 414 (452)
|+++++.+.+.+..
T Consensus 155 ~~~l~~~l~~~~~~ 168 (190)
T cd04144 155 FYTLVRALRQQRQG 168 (190)
T ss_pred HHHHHHHHHHhhcc
Confidence 99999887655444
No 34
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=3.2e-28 Score=225.00 Aligned_cols=165 Identities=31% Similarity=0.614 Sum_probs=146.3
Q ss_pred ccEEEeeecccCCcceeeecccccccc-ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLD-NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~-~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
+||+++|++|+|||||++++....+.. .+.++++.++....+.+ ++..+.+.||||+|+++|..++..+++.+|++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ 77 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTV---DGVKVKLQIWDTAGQERFRSVTHAYYRDAHAL 77 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEE---CCEEEEEEEEeCCCcHHHHHhhHHHccCCCEE
Confidence 589999999999999999999888764 67788888887777777 88889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
|+|||+++..+|+++..|+..+... ...++|++||+||+|+.. +.+..++++.+...++.. |+++||++|.|++
T Consensus 78 i~v~D~~~~~s~~~~~~~~~~i~~~----~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~-~~e~Sa~~~~~v~ 152 (191)
T cd04112 78 LLLYDITNKASFDNIRAWLTEIKEY----AQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVP-FMETSAKTGLNVE 152 (191)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHH
Confidence 9999999999999999999988876 345789999999999965 667778888998888875 9999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q psy14768 399 DSMNFLVDRIICSKR 413 (452)
Q Consensus 399 ~lf~~i~~~i~~~~~ 413 (452)
++|.++++.+.....
T Consensus 153 ~l~~~l~~~~~~~~~ 167 (191)
T cd04112 153 LAFTAVAKELKHRKY 167 (191)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999876543
No 35
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=9.2e-28 Score=221.14 Aligned_cols=162 Identities=31% Similarity=0.627 Sum_probs=146.7
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|+++||||||+++|.++.+...+.++.+.++....+.+ ++..+.+.+|||+|++.|..++..+++++|++|
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ii 77 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYI---ENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYL 77 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE---CCEEEEEEEEECCCcHHHHhhHHHHccCCCEEE
Confidence 58999999999999999999999988778899998887777777 788899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~ 399 (452)
+|||++++.+|+.+..|+..+... ....+|++||+||+|+.+ +.+..++...+++..++. |+++||++|.|+++
T Consensus 78 lv~d~~~~~s~~~i~~~~~~i~~~----~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evSa~~~~~i~~ 152 (188)
T cd04125 78 LVYDVTDQESFENLKFWINEINRY----ARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIP-FFETSAKQSINVEE 152 (188)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHH
Confidence 999999999999999999998876 345689999999999986 667788888898888874 99999999999999
Q ss_pred HHHHHHHHHHH
Q psy14768 400 SMNFLVDRIIC 410 (452)
Q Consensus 400 lf~~i~~~i~~ 410 (452)
+|+++++.+..
T Consensus 153 ~f~~l~~~~~~ 163 (188)
T cd04125 153 AFILLVKLIIK 163 (188)
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 36
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.96 E-value=3.9e-28 Score=224.55 Aligned_cols=162 Identities=25% Similarity=0.443 Sum_probs=142.8
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.+||+++|.++||||||+.+|..+.|...+.+|++.++. ..+.+ ++..+.+.||||+|+++|..++..+++++|++
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~---~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ 78 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAV---DGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVF 78 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEE---CCEEEEEEEEECCCchhhhhhhhhhccCCCEE
Confidence 479999999999999999999999998899999986654 34555 88889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C------------cccHHHHHHHHHHcCCCE
Q psy14768 320 IIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R------------QVEINEIEAVCHQYNFMS 385 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~------------~~~~e~~~~~~~~~~~~~ 385 (452)
|+|||++++.||+.+. .|...+... ..++|++|||||.||.+ + .+..+++++++++++...
T Consensus 79 ilvydit~~~Sf~~~~~~w~~~i~~~-----~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~ 153 (191)
T cd01875 79 IICFSIASPSSYENVRHKWHPEVCHH-----CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVK 153 (191)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcE
Confidence 9999999999999996 588877654 24799999999999964 1 356788999999998666
Q ss_pred EEEecCCCCccHHHHHHHHHHHHHH
Q psy14768 386 WIEVSSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 386 ~~evSAktg~nv~~lf~~i~~~i~~ 410 (452)
|++|||++|.||+++|+++++.+..
T Consensus 154 ~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 154 YLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999988753
No 37
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=7.3e-28 Score=221.32 Aligned_cols=165 Identities=25% Similarity=0.450 Sum_probs=142.6
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|++|+|||||+++|.++.+...+.++++.++... +... ++..+.+.||||+|+++|..++..+++++|++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 77 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGP--NGKIIELALWDTAGQEEYDRLRPLSYPDVDVLL 77 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEec--CCcEEEEEEEECCCchhHHHHHHHhCCCCCEEE
Confidence 4899999999999999999999999888888888776543 3331 367889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-----CcccHHHHHHHHHHcCCCEEEEecCCCC
Q psy14768 321 IMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-----RQVEINEIEAVCHQYNFMSWIEVSSKEH 394 (452)
Q Consensus 321 lV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-----~~~~~e~~~~~~~~~~~~~~~evSAktg 394 (452)
+|||+++..||+++. .|+..+... ..++|++||+||+|+.+ +.+..+++++++..++..+|+++||++|
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 152 (187)
T cd04132 78 ICYAVDNPTSLDNVEDKWFPEVNHF-----CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTM 152 (187)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCC
Confidence 999999999999996 588777654 35789999999999865 3467888999999998856999999999
Q ss_pred ccHHHHHHHHHHHHHHhhh
Q psy14768 395 LMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 395 ~nv~~lf~~i~~~i~~~~~ 413 (452)
.||+++|+.+++.+.....
T Consensus 153 ~~v~~~f~~l~~~~~~~~~ 171 (187)
T cd04132 153 ENVEEVFDTAIEEALKKEG 171 (187)
T ss_pred CCHHHHHHHHHHHHHhhhh
Confidence 9999999999999885544
No 38
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.96 E-value=6.9e-28 Score=217.53 Aligned_cols=163 Identities=31% Similarity=0.664 Sum_probs=148.6
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.+||+++|++|+|||||++++.+..+...+.++++.++....+.+ ++..+.+++|||+|+++|..++..+++++|++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~---~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~ 79 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIEL---DGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 79 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEE---CCEEEEEEEEeCCchHHHHHHHHHHhCCCCEE
Confidence 489999999999999999999999999999999998887777777 77889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
|+|||++++.+|+.+..|+..+.+. ...++|++||+||+|+.+ +++..+++..++..++.. |+++||++|.|++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~ 154 (167)
T cd01867 80 ILVYDITDEKSFENIRNWMRNIEEH----ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIK-FLETSAKANINVE 154 (167)
T ss_pred EEEEECcCHHHHHhHHHHHHHHHHh----CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence 9999999999999999999999876 456799999999999986 667788888899988875 9999999999999
Q ss_pred HHHHHHHHHHHH
Q psy14768 399 DSMNFLVDRIIC 410 (452)
Q Consensus 399 ~lf~~i~~~i~~ 410 (452)
++|+++++.+..
T Consensus 155 ~~~~~i~~~~~~ 166 (167)
T cd01867 155 EAFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 39
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.96 E-value=9.4e-28 Score=223.43 Aligned_cols=168 Identities=33% Similarity=0.612 Sum_probs=150.5
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..+||+++|++|||||||+++|.+..+...+.+|++.++....+.+ ++..+.+.||||+|++.|..++..+++++|+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ 81 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI---NGERVKLQIWDTAGQERFRTITSTYYRGTHG 81 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEE---CCEEEEEEEEeCCCchhHHHHHHHHhCCCcE
Confidence 3589999999999999999999999888888899998888777777 7788899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|+|||++++.+|+.+..|+..+... ....|++||+||+|+.+ ..+..++...++..++.. |+++||++|.||
T Consensus 82 iilv~D~~~~~s~~~~~~~~~~i~~~-----~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~gi 155 (199)
T cd04110 82 VIVVYDVTNGESFVNVKRWLQEIEQN-----CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGIS-LFETSAKENINV 155 (199)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh-----CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEECCCCcCH
Confidence 99999999999999999999988765 35689999999999987 566778888899888865 999999999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q psy14768 398 EDSMNFLVDRIICSKRME 415 (452)
Q Consensus 398 ~~lf~~i~~~i~~~~~~~ 415 (452)
+++|+++.+.++..+...
T Consensus 156 ~~lf~~l~~~~~~~~~~~ 173 (199)
T cd04110 156 EEMFNCITELVLRAKKDN 173 (199)
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 999999999998665443
No 40
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.96 E-value=6.2e-28 Score=219.44 Aligned_cols=163 Identities=27% Similarity=0.435 Sum_probs=144.8
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.+||+++|.+|||||||++++..+.+...+.+|++..+. ..+.+ ++..+.+.||||+|+++|..++..+++.+|++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~---~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ 77 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARI---DNEPALLDILDTAGQAEFTAMRDQYMRCGEGF 77 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEE---CCEEEEEEEEeCCCchhhHHHhHHHhhcCCEE
Confidence 378999999999999999999999998888888886553 44566 78889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
|+|||++++.||+.+..|...+.+.. ...++|++||+||+|+.+ +++..++..++++.+++. |++|||++|.||+
T Consensus 78 ilv~d~~~~~Sf~~~~~~~~~i~~~~---~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sa~~~~~v~ 153 (172)
T cd04141 78 IICYSVTDRHSFQEASEFKKLITRVR---LTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCP-FFETSAALRHYID 153 (172)
T ss_pred EEEEECCchhHHHHHHHHHHHHHHhc---CCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCE-EEEEecCCCCCHH
Confidence 99999999999999999988887652 235799999999999976 678888999999988875 9999999999999
Q ss_pred HHHHHHHHHHHH
Q psy14768 399 DSMNFLVDRIIC 410 (452)
Q Consensus 399 ~lf~~i~~~i~~ 410 (452)
++|+++++.+.+
T Consensus 154 ~~f~~l~~~~~~ 165 (172)
T cd04141 154 DAFHGLVREIRR 165 (172)
T ss_pred HHHHHHHHHHHH
Confidence 999999988775
No 41
>KOG0083|consensus
Probab=99.96 E-value=1.4e-28 Score=204.99 Aligned_cols=161 Identities=31% Similarity=0.624 Sum_probs=149.3
Q ss_pred EeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEE
Q psy14768 245 ITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMF 323 (452)
Q Consensus 245 ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~ 323 (452)
++|++++|||+|+-+|-..-|. ...++|+|+|+..+.+.+ +++++++++|||+||++|++....||+++|+.+|+|
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~---~~~kvklqiwdtagqerfrsvt~ayyrda~alllly 78 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDM---DDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLY 78 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceecc---CCcEEEEEEeeccchHHHhhhhHhhhcccceeeeee
Confidence 6899999999999999876655 567889999999999999 999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHHHHH
Q psy14768 324 DLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMN 402 (452)
Q Consensus 324 D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~lf~ 402 (452)
|+.+..||++.+.|+.+|..+ ....+.+++++||+|+.. +.+..++.+.+++.++++ |+|+||++|.||+..|.
T Consensus 79 diankasfdn~~~wlsei~ey----~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ip-fmetsaktg~nvd~af~ 153 (192)
T KOG0083|consen 79 DIANKASFDNCQAWLSEIHEY----AKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIP-FMETSAKTGFNVDLAFL 153 (192)
T ss_pred ecccchhHHHHHHHHHHHHHH----HHhhHhHhhhccccccchhhccccchHHHHHHHHCCC-ceeccccccccHhHHHH
Confidence 999999999999999999988 567788999999999976 888999999999999998 99999999999999999
Q ss_pred HHHHHHHHhhh
Q psy14768 403 FLVDRIICSKR 413 (452)
Q Consensus 403 ~i~~~i~~~~~ 413 (452)
.|++.+.+.+.
T Consensus 154 ~ia~~l~k~~~ 164 (192)
T KOG0083|consen 154 AIAEELKKLKM 164 (192)
T ss_pred HHHHHHHHhcc
Confidence 99998876654
No 42
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.95 E-value=1e-27 Score=216.66 Aligned_cols=166 Identities=31% Similarity=0.588 Sum_probs=148.7
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..+||+++|++|+|||||+++++++.+...+.++++.++....+.+ ++..+.+.||||+|+++|..++..+++.+|+
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~ 80 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV---DGHFVTLQIWDTAGQERFRSLRTPFYRGSDC 80 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEE---CCeEEEEEEEeCCChHHHHHhHHHHhcCCCE
Confidence 3589999999999999999999999988888889998887777777 8889999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
+|+|||+++..+|+.+..|...+..........++|++||+||+|+.++.+..+++++++++++..+|+++||++|.|+.
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 81 CLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 99999999999999999999888765332234678999999999997777788899999999987679999999999999
Q ss_pred HHHHHHHHH
Q psy14768 399 DSMNFLVDR 407 (452)
Q Consensus 399 ~lf~~i~~~ 407 (452)
++|+++++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999999875
No 43
>KOG0081|consensus
Probab=99.95 E-value=4e-28 Score=207.96 Aligned_cols=170 Identities=29% Similarity=0.548 Sum_probs=153.8
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeec------CCeeEEEEEEecCCcchhhhhhhhhh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY------GGRPVKLQIWDIAGQDRYICMSRVYY 313 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~------~~~~~~l~l~DtaG~e~~~~~~~~~i 313 (452)
-+|.+.+|++||||||++.++..++|....+.|+|+||..+.+.+..- .+..+.+++|||+|||+|+++...++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf 88 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF 88 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence 468889999999999999999999999999999999999888776321 13568999999999999999999999
Q ss_pred cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCC
Q psy14768 314 QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392 (452)
Q Consensus 314 ~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAk 392 (452)
++|-+++|+||+++..||-+++.|+.++..+. .-++.-|||+|||+||.+ +.++.+++.+++.+++++ |||+||.
T Consensus 89 RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hA---YcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglP-YfETSA~ 164 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHA---YCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLP-YFETSAC 164 (219)
T ss_pred HhhccceEEEeccchHHHHHHHHHHHHHHHhh---ccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCC-eeeeccc
Confidence 99999999999999999999999999998773 346677999999999998 999999999999999998 9999999
Q ss_pred CCccHHHHHHHHHHHHHHhhh
Q psy14768 393 EHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 393 tg~nv~~lf~~i~~~i~~~~~ 413 (452)
+|.||++..+.++..+.++..
T Consensus 165 tg~Nv~kave~LldlvM~Rie 185 (219)
T KOG0081|consen 165 TGTNVEKAVELLLDLVMKRIE 185 (219)
T ss_pred cCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999988876543
No 44
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.95 E-value=1.3e-27 Score=217.97 Aligned_cols=167 Identities=32% Similarity=0.570 Sum_probs=146.5
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeee-------cCCeeEEEEEEecCCcchhhhhhhhh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK-------YGGRPVKLQIWDIAGQDRYICMSRVY 312 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~-------~~~~~~~l~l~DtaG~e~~~~~~~~~ 312 (452)
.+||+++|++|||||||++++.+..+...+.+|++.++....+.+.. ..+..+.+.||||+|+++|..++..+
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 83 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAF 83 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHH
Confidence 48999999999999999999999999999999999888776665510 01456889999999999999999999
Q ss_pred hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecC
Q psy14768 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSS 391 (452)
Q Consensus 313 i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSA 391 (452)
++++|++|+|||++++.||+++..|+..+.... ...+.|++||+||+|+.+ +.+..+++.++++.++.. |+++||
T Consensus 84 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa 159 (180)
T cd04127 84 FRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHA---YCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIP-YFETSA 159 (180)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCe-EEEEeC
Confidence 999999999999999999999999999887652 235689999999999986 677888899999999875 999999
Q ss_pred CCCccHHHHHHHHHHHHHH
Q psy14768 392 KEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 392 ktg~nv~~lf~~i~~~i~~ 410 (452)
++|.|++++|+++++.+.+
T Consensus 160 k~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 160 ATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 45
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.95 E-value=1.6e-27 Score=214.70 Aligned_cols=161 Identities=35% Similarity=0.673 Sum_probs=144.9
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|++|+|||||++++.++.+...+.++++.++....+.. ++..+.+.+|||+|+++|..++..+++++|+++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l 78 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR---NDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 78 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE---CCEEEEEEEEECCChHHHHHHHHHHccCCcEEE
Confidence 68999999999999999999999998888899988887777666 777899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~ 399 (452)
+|||+++..+|+.+..|+..+... ....+|++||+||+|+.+ +.+..++..++++.+++. ++++||++|.|+++
T Consensus 79 ~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~ 153 (165)
T cd01865 79 LMYDITNEESFNAVQDWSTQIKTY----SWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFE-FFEASAKENINVKQ 153 (165)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh----CCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCE-EEEEECCCCCCHHH
Confidence 999999999999999999998766 345789999999999976 566778888899888875 99999999999999
Q ss_pred HHHHHHHHHH
Q psy14768 400 SMNFLVDRII 409 (452)
Q Consensus 400 lf~~i~~~i~ 409 (452)
+|++++..+.
T Consensus 154 l~~~l~~~~~ 163 (165)
T cd01865 154 VFERLVDIIC 163 (165)
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 46
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.95 E-value=1.3e-27 Score=214.72 Aligned_cols=159 Identities=30% Similarity=0.595 Sum_probs=144.6
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|++++|||||+++++++.+...+.+|++.++....+.+ ++..+.+.+|||+|+++|..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 77 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEV---DGIKVRIQIWDTAGQERYQTITKQYYRRAQGIF 77 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE---CCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEE
Confidence 47999999999999999999999998888999999888777777 778899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~ 399 (452)
+|||+++..||+.+..|+..+... ...+.|+++|+||.|+.+ +.+..++...+++..+.. |++|||++|.||++
T Consensus 78 ~v~d~~~~~sf~~~~~~~~~~~~~----~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~~ 152 (161)
T cd04117 78 LVYDISSERSYQHIMKWVSDVDEY----APEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMD-FFETSACTNSNIKE 152 (161)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHH
Confidence 999999999999999999988765 345799999999999976 777888999999988855 99999999999999
Q ss_pred HHHHHHHH
Q psy14768 400 SMNFLVDR 407 (452)
Q Consensus 400 lf~~i~~~ 407 (452)
+|++|++.
T Consensus 153 ~f~~l~~~ 160 (161)
T cd04117 153 SFTRLTEL 160 (161)
T ss_pred HHHHHHhh
Confidence 99999864
No 47
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.95 E-value=1.1e-27 Score=218.49 Aligned_cols=159 Identities=24% Similarity=0.438 Sum_probs=140.3
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|.++||||||+++|..+.|...+.||++.++. ..+.+ ++..+.+.||||+|+++|..++..+++++|++|
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~i 77 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMI---GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 77 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEE---CCEEEEEEEEECCCccchhhhhhhhcccCCEEE
Confidence 68999999999999999999999998899999987764 34555 788899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCCEE
Q psy14768 321 IMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFMSW 386 (452)
Q Consensus 321 lV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~~~ 386 (452)
||||++++.||+++. .|...+... ..++|++||+||.|+.+ +.+..+++++++++++...|
T Consensus 78 lv~d~~~~~s~~~~~~~w~~~i~~~-----~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~ 152 (175)
T cd01874 78 VCFSVVSPSSFENVKEKWVPEITHH-----CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKY 152 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEE
Confidence 999999999999996 598888765 24699999999999853 35677888899998886669
Q ss_pred EEecCCCCccHHHHHHHHHHHH
Q psy14768 387 IEVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 387 ~evSAktg~nv~~lf~~i~~~i 408 (452)
++|||++|.||+++|+.+++..
T Consensus 153 ~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 153 VECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred EEecCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998854
No 48
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.95 E-value=1.9e-27 Score=214.12 Aligned_cols=163 Identities=33% Similarity=0.661 Sum_probs=147.6
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.+||+++|++|||||||+++++++.+...+.++.+.++....+.+ ++..+.+.+|||+|+++|..++..+++++|++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~i 78 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL---DGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 78 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE---CCEEEEEEEEECCCcHhHHHHHHHHhCcCCEE
Confidence 379999999999999999999998888888899998888888777 78889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
|+|||++++.||+.+..|+..+... ...+.|+++|+||+|+.+ +.+..+++..++..+++. |+++||++|.|++
T Consensus 79 i~v~d~~~~~s~~~l~~~~~~~~~~----~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~ 153 (166)
T cd01869 79 IIVYDVTDQESFNNVKQWLQEIDRY----ASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIP-FLETSAKNATNVE 153 (166)
T ss_pred EEEEECcCHHHHHhHHHHHHHHHHh----CCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EEEEECCCCcCHH
Confidence 9999999999999999999998876 345789999999999876 667788899999988875 9999999999999
Q ss_pred HHHHHHHHHHHH
Q psy14768 399 DSMNFLVDRIIC 410 (452)
Q Consensus 399 ~lf~~i~~~i~~ 410 (452)
++|.++++.+.+
T Consensus 154 ~~~~~i~~~~~~ 165 (166)
T cd01869 154 QAFMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999988753
No 49
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.95 E-value=1.7e-27 Score=213.65 Aligned_cols=165 Identities=23% Similarity=0.493 Sum_probs=147.1
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|+++||||||+++++++.+...+.++++.++....+.. ++..+.+.+|||+|++.|..++..+++.+|++|
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSV---RNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVL 77 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE---CCeEEEEEEEECCccHHHHHHHHHHhccCCEEE
Confidence 58999999999999999999999999999999999988888777 788899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhh-cCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCIL-DNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~-~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
+|||++++.+|+.+..|+..+...... ....+.|+++|+||+|+.+ .....++...++...++. |+++||++|.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 156 (168)
T cd04119 78 LVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFK-YFETSACTGEGVN 156 (168)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCe-EEEEECCCCCCHH
Confidence 999999999999999999999876311 0125699999999999974 667788888899888865 9999999999999
Q ss_pred HHHHHHHHHHH
Q psy14768 399 DSMNFLVDRII 409 (452)
Q Consensus 399 ~lf~~i~~~i~ 409 (452)
++|+++++.+.
T Consensus 157 ~l~~~l~~~l~ 167 (168)
T cd04119 157 EMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 50
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.95 E-value=1.6e-27 Score=213.39 Aligned_cols=160 Identities=28% Similarity=0.539 Sum_probs=140.0
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|++|||||||+++++.+.+...+.+|++ +.....+.+ ++..+.+.||||+|+++|..++..+++++|+++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 77 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEV---DGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFV 77 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEE---CCEEEEEEEEECCCccccchHHHHHhhcCCEEE
Confidence 6899999999999999999999888888888887 444556666 788899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~ 399 (452)
+|||+++..+|+++..|...+.... ...++|++||+||+|+.+ +.+..++...+.+.++. +|+++||++|.|+++
T Consensus 78 lv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~ 153 (163)
T cd04136 78 LVYSITSQSSFNDLQDLREQILRVK---DTENVPMVLVGNKCDLEDERVVSREEGQALARQWGC-PFYETSAKSKINVDE 153 (163)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccceecHHHHHHHHHHcCC-eEEEecCCCCCCHHH
Confidence 9999999999999999998887652 235799999999999976 56677778888888884 599999999999999
Q ss_pred HHHHHHHHH
Q psy14768 400 SMNFLVDRI 408 (452)
Q Consensus 400 lf~~i~~~i 408 (452)
+|+++++.+
T Consensus 154 l~~~l~~~~ 162 (163)
T cd04136 154 VFADLVRQI 162 (163)
T ss_pred HHHHHHHhc
Confidence 999998754
No 51
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.95 E-value=5.5e-27 Score=216.69 Aligned_cols=163 Identities=32% Similarity=0.590 Sum_probs=143.2
Q ss_pred ccEEEeeecccCCcceeeecccccccc-ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLD-NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~-~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
+||+++|++|||||||+++|+++.+.. .+.+|++.++....+.+ ++..+.+.+|||+|+++|..++..+++++|++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~i 77 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVV---GERVVTLGIWDTAGSERYEAMSRIYYRGAKAA 77 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEE---CCEEEEEEEEECCCchhhhhhhHhhcCCCCEE
Confidence 489999999999999999999988875 67889988887777777 88889999999999999999998999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-----CcccHHHHHHHHHHcCCCEEEEecCCCC
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-----RQVEINEIEAVCHQYNFMSWIEVSSKEH 394 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-----~~~~~e~~~~~~~~~~~~~~~evSAktg 394 (452)
|+|||+++..+|+++..|+..+... ..++|++||+||+|+.+ +++..+++.+++..++.. ++++||++|
T Consensus 78 ilv~d~~~~~s~~~~~~~~~~i~~~-----~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~ 151 (193)
T cd04118 78 IVCYDLTDSSSFERAKFWVKELQNL-----EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQ-HFETSSKTG 151 (193)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhc-----CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCe-EEEEeCCCC
Confidence 9999999999999999999988764 24689999999999864 345567788888888765 899999999
Q ss_pred ccHHHHHHHHHHHHHHhh
Q psy14768 395 LMIEDSMNFLVDRIICSK 412 (452)
Q Consensus 395 ~nv~~lf~~i~~~i~~~~ 412 (452)
.|++++|+++++.+.+..
T Consensus 152 ~gv~~l~~~i~~~~~~~~ 169 (193)
T cd04118 152 QNVDELFQKVAEDFVSRA 169 (193)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999987543
No 52
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.95 E-value=2e-27 Score=218.11 Aligned_cols=163 Identities=24% Similarity=0.463 Sum_probs=142.6
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|.++||||||+++|+.+.+...+.+|++.++....+.. ++..+.+.+|||+|+++|..++..+++++|+++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~---~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~ii 77 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISI---RGTEITFSIWDLGGQREFINMLPLVCNDAVAIL 77 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEE---CCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEE
Confidence 58999999999999999999999999889999999998878877 888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC------CcccHHHHHHHHHHcCCCEEEEecCCCC
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD------RQVEINEIEAVCHQYNFMSWIEVSSKEH 394 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~------~~~~~e~~~~~~~~~~~~~~~evSAktg 394 (452)
+|||++++.||+++..|+..+.+. .....| +||+||+|+.. .....++.+++++.++. +|++|||++|
T Consensus 78 lv~D~t~~~s~~~i~~~~~~~~~~----~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~e~SAk~g 151 (182)
T cd04128 78 FMFDLTRKSTLNSIKEWYRQARGF----NKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKA-PLIFCSTSHS 151 (182)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh----CCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCC-EEEEEeCCCC
Confidence 999999999999999999988775 234466 68899999952 12234677788888885 4999999999
Q ss_pred ccHHHHHHHHHHHHHHhh
Q psy14768 395 LMIEDSMNFLVDRIICSK 412 (452)
Q Consensus 395 ~nv~~lf~~i~~~i~~~~ 412 (452)
.||+++|+++++.+.+.+
T Consensus 152 ~~v~~lf~~l~~~l~~~~ 169 (182)
T cd04128 152 INVQKIFKIVLAKAFDLP 169 (182)
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 999999999999887543
No 53
>PTZ00369 Ras-like protein; Provisional
Probab=99.95 E-value=3.1e-27 Score=218.04 Aligned_cols=165 Identities=27% Similarity=0.515 Sum_probs=144.7
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..+||+++|.+|+|||||++++.++.+...+.+|++.++ ...+.+ ++..+.+.+|||+|+++|..++..+++.+|+
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ 79 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVI---DEETCLLDILDTAGQEEYSAMRDQYMRTGQG 79 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEE---CCEEEEEEEEeCCCCccchhhHHHHhhcCCE
Confidence 358999999999999999999999888888888888666 445556 7888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|+|||+++..+|+++..|+..+.+.. ...+.|++||+||.|+.+ +.+..+++..+.+.++.. |++|||++|.||
T Consensus 80 iilv~D~s~~~s~~~~~~~~~~i~~~~---~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~-~~e~Sak~~~gi 155 (189)
T PTZ00369 80 FLCVYSITSRSSFEEIASFREQILRVK---DKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIP-FLETSAKQRVNV 155 (189)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCE-EEEeeCCCCCCH
Confidence 999999999999999999998887652 235789999999999865 666777888888888765 999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy14768 398 EDSMNFLVDRIICS 411 (452)
Q Consensus 398 ~~lf~~i~~~i~~~ 411 (452)
+++|+++++.+.+.
T Consensus 156 ~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 156 DEAFYELVREIRKY 169 (189)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887643
No 54
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.95 E-value=2.9e-27 Score=223.47 Aligned_cols=165 Identities=27% Similarity=0.540 Sum_probs=145.9
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...+||+++|.+|||||||+++++.+.+...+.+|++.++....+.. ++..+.+.+|||+|+++|..++..+++.+|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 87 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT---NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEE---CCeEEEEEEEECCCchhhhhhhHHHccccc
Confidence 55789999999999999999999999998889999998888777766 777899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
++|+|||+++..||+.+..|+..+... ..+.|++|||||+|+.++.+..+++ .+.+..++. |++|||++|.||
T Consensus 88 ~~ilvfD~~~~~s~~~i~~w~~~i~~~-----~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~-~~e~SAk~~~~i 160 (219)
T PLN03071 88 CAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQ-YYEISAKSNYNF 160 (219)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHh-----CCCCcEEEEEEchhhhhccCCHHHH-HHHHhcCCE-EEEcCCCCCCCH
Confidence 999999999999999999999998865 2569999999999997655555555 677776665 999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy14768 398 EDSMNFLVDRIICSK 412 (452)
Q Consensus 398 ~~lf~~i~~~i~~~~ 412 (452)
+++|+++++.+....
T Consensus 161 ~~~f~~l~~~~~~~~ 175 (219)
T PLN03071 161 EKPFLYLARKLAGDP 175 (219)
T ss_pred HHHHHHHHHHHHcCc
Confidence 999999999987653
No 55
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.95 E-value=4.2e-27 Score=210.70 Aligned_cols=160 Identities=34% Similarity=0.690 Sum_probs=150.6
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII 321 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl 321 (452)
||+++|+++||||||+++|.++.+...+.+|.+.+.....+.. ++..+.+.|||++|+++|..++..+++++|++|+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii 77 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSI---DGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIII 77 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEE---TTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccc---cccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999999999999888 8999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHHH
Q psy14768 322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS 400 (452)
Q Consensus 322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~l 400 (452)
|||++++.||+.+..|+..+... ...+.|++|||||.|+.+ +++..+++++++++++ .+|++|||+++.||.++
T Consensus 78 ~fd~~~~~S~~~~~~~~~~i~~~----~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~ 152 (162)
T PF00071_consen 78 VFDVTDEESFENLKKWLEEIQKY----KPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-VPYFEVSAKNGENVKEI 152 (162)
T ss_dssp EEETTBHHHHHTHHHHHHHHHHH----STTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-SEEEEEBTTTTTTHHHH
T ss_pred ccccccccccccccccccccccc----ccccccceeeeccccccccccchhhHHHHHHHHhC-CEEEEEECCCCCCHHHH
Confidence 99999999999999999999988 335699999999999987 8899999999999999 56999999999999999
Q ss_pred HHHHHHHHH
Q psy14768 401 MNFLVDRII 409 (452)
Q Consensus 401 f~~i~~~i~ 409 (452)
|..+++.++
T Consensus 153 f~~~i~~i~ 161 (162)
T PF00071_consen 153 FQELIRKIL 161 (162)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999876
No 56
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.95 E-value=5.2e-27 Score=210.89 Aligned_cols=161 Identities=32% Similarity=0.643 Sum_probs=145.5
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.+||+++|++|||||||++++.++.+...+.++++.++....+.. ++..+.+.+|||+|+++|..++..++++++++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQI---DGKTIKAQIWDTAGQERYRAITSAYYRGAVGA 79 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE---CCEEEEEEEEeCCChHHHHHHHHHHHCCCCEE
Confidence 479999999999999999999999888888899999888888877 78888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
|+|||+++..+|+++..|+..+... ...++|++||+||+|+.+ +.+..++...++...+.. |+++||++|.|++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~ 154 (165)
T cd01868 80 LLVYDITKKQTFENVERWLKELRDH----ADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLS-FIETSALDGTNVE 154 (165)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCE-EEEEECCCCCCHH
Confidence 9999999999999999999998876 334689999999999976 667788888888887764 9999999999999
Q ss_pred HHHHHHHHHH
Q psy14768 399 DSMNFLVDRI 408 (452)
Q Consensus 399 ~lf~~i~~~i 408 (452)
++|++++..+
T Consensus 155 ~l~~~l~~~i 164 (165)
T cd01868 155 EAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 57
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.95 E-value=4.2e-27 Score=211.45 Aligned_cols=162 Identities=25% Similarity=0.513 Sum_probs=141.0
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
++||+++|.+|+|||||+++++.+.+...+.+|++..+ ...+.+ ++..+.+.+|||+|+++|..++..+++.+|++
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 76 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEV---DGQQCMLEILDTAGTEQFTAMRDLYMKNGQGF 76 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEE---CCEEEEEEEEECCCcccchhHHHHHHhhCCEE
Confidence 47899999999999999999998888888888887655 345555 77889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
|+|||+++..+|+.+..|+..+.... ...+.|++||+||+|+.+ ..+..++..++++.++.. |+++||++|.|++
T Consensus 77 ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~ 152 (164)
T cd04175 77 VLVYSITAQSTFNDLQDLREQILRVK---DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCA-FLETSAKAKINVN 152 (164)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCE-EEEeeCCCCCCHH
Confidence 99999999999999999988887542 346799999999999976 556677788888888865 9999999999999
Q ss_pred HHHHHHHHHHH
Q psy14768 399 DSMNFLVDRII 409 (452)
Q Consensus 399 ~lf~~i~~~i~ 409 (452)
++|.++++.+.
T Consensus 153 ~~~~~l~~~l~ 163 (164)
T cd04175 153 EIFYDLVRQIN 163 (164)
T ss_pred HHHHHHHHHhh
Confidence 99999987653
No 58
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=6e-27 Score=210.76 Aligned_cols=161 Identities=37% Similarity=0.687 Sum_probs=145.5
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.+||+++|++|+|||||++++..+.+...+.++.+.++....+.+ ++..+.+.+|||+|++.|..++..+++.+|++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 79 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEI---EGKRVKLQIWDTAGQERFRTITQSYYRSANGA 79 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEE---CCEEEEEEEEECCChHHHHHHHHHHhccCCEE
Confidence 489999999999999999999988888888888888887777777 77778999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
++|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+ +++..+++.++++.++...++++||++|.|++
T Consensus 80 llv~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 155 (165)
T cd01864 80 IIAYDITRRSSFESVPHWIEEVEKY----GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVE 155 (165)
T ss_pred EEEEECcCHHHHHhHHHHHHHHHHh----CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHH
Confidence 9999999999999999999999775 346799999999999976 66778888999999888778999999999999
Q ss_pred HHHHHHHHH
Q psy14768 399 DSMNFLVDR 407 (452)
Q Consensus 399 ~lf~~i~~~ 407 (452)
++|+++++.
T Consensus 156 ~~~~~l~~~ 164 (165)
T cd01864 156 EAFLLMATE 164 (165)
T ss_pred HHHHHHHHh
Confidence 999999865
No 59
>KOG0097|consensus
Probab=99.95 E-value=2.6e-27 Score=199.19 Aligned_cols=167 Identities=29% Similarity=0.596 Sum_probs=157.8
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
-+|-+|+|+-+||||+|+.+|....|..+-..|+|.+|.+..+.+ .+.+++++||||+||++|+.....||+.+-+.
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriiev---sgqkiklqiwdtagqerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV---SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 87 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEe---cCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 478899999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
++|||++...++..+..|+...+.. .+++..|+|++||.||.. +.+.++++++|+++.|.. |.++||++|.||+
T Consensus 88 lmvyditrrstynhlsswl~dar~l----tnpnt~i~lignkadle~qrdv~yeeak~faeengl~-fle~saktg~nve 162 (215)
T KOG0097|consen 88 LMVYDITRRSTYNHLSSWLTDARNL----TNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLM-FLEASAKTGQNVE 162 (215)
T ss_pred eEEEEehhhhhhhhHHHHHhhhhcc----CCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeE-EEEecccccCcHH
Confidence 9999999999999999999988877 678899999999999988 899999999999999998 9999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q psy14768 399 DSMNFLVDRIICSKRM 414 (452)
Q Consensus 399 ~lf~~i~~~i~~~~~~ 414 (452)
+.|-..++.+.+.-..
T Consensus 163 dafle~akkiyqniqd 178 (215)
T KOG0097|consen 163 DAFLETAKKIYQNIQD 178 (215)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 9999999988876443
No 60
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.95 E-value=1.1e-26 Score=210.82 Aligned_cols=162 Identities=28% Similarity=0.493 Sum_probs=142.9
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII 321 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl 321 (452)
||+++|.++||||||+++++++.+...+.+|++.++....+.+ ++..+.+.||||+|+++|..++..+++++|++|+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~il 78 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEI---LGVPFSLQLWDTAGQERFKCIASTYYRGAQAIII 78 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE---CCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEE
Confidence 7999999999999999999999999999999999988777777 8888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C--cccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R--QVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~--~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
|||+++..+|+.+..|+..+.+.. .....|+++|+||+|+.+ + ....+++..++.+++.. |+++||++|.||+
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~g~~v~ 154 (170)
T cd04108 79 VFDLTDVASLEHTRQWLEDALKEN---DPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAE-YWSVSALSGENVR 154 (170)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhc---CCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCe-EEEEECCCCCCHH
Confidence 999999999999999999876541 234578999999999965 2 23466777888888875 9999999999999
Q ss_pred HHHHHHHHHHHH
Q psy14768 399 DSMNFLVDRIIC 410 (452)
Q Consensus 399 ~lf~~i~~~i~~ 410 (452)
++|+.+++.+.+
T Consensus 155 ~lf~~l~~~~~~ 166 (170)
T cd04108 155 EFFFRVAALTFE 166 (170)
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 61
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.95 E-value=1.3e-26 Score=209.46 Aligned_cols=163 Identities=29% Similarity=0.620 Sum_probs=147.3
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.+||+++|++|||||||++++++..+...+.++.+.++....+.. ++..+.+.+|||+|+++|..++..+++++|++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 80 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI---DGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 80 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE---CCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 489999999999999999999998888888888898888777777 78888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
|+|||++++.+|+++..|+..+... ...++|++||+||+|+.+ ..+..++++.++...+.. |+++||+++.||+
T Consensus 81 l~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~ 155 (168)
T cd01866 81 LLVYDITRRETFNHLTSWLEDARQH----SNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLI-FMETSAKTASNVE 155 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence 9999999999999999999999876 346799999999999975 667788888898888776 9999999999999
Q ss_pred HHHHHHHHHHHH
Q psy14768 399 DSMNFLVDRIIC 410 (452)
Q Consensus 399 ~lf~~i~~~i~~ 410 (452)
++|.++++.+.+
T Consensus 156 ~~~~~~~~~~~~ 167 (168)
T cd01866 156 EAFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 62
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.95 E-value=6.8e-27 Score=213.06 Aligned_cols=158 Identities=25% Similarity=0.423 Sum_probs=138.6
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|.+|||||||+.+++.+.+...+.++++. .....+.. ++..+.+.||||+|++.|..++..+++++|++|
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMV---DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 77 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEE---CCEEEEEEEEECCCchhhhhhhhhhcCCCCEEE
Confidence 68999999999999999999999998888898864 33445555 788899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCCEE
Q psy14768 321 IMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFMSW 386 (452)
Q Consensus 321 lV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~~~ 386 (452)
+|||++++.||+++. .|+..+... ..+.|++||+||.|+.+ +.+..+++.+++++++...|
T Consensus 78 lv~d~~~~~sf~~~~~~~~~~~~~~-----~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 152 (174)
T cd01871 78 ICFSLVSPASFENVRAKWYPEVRHH-----CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 152 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEE
Confidence 999999999999995 688877664 24799999999999954 24778899999999997669
Q ss_pred EEecCCCCccHHHHHHHHHHH
Q psy14768 387 IEVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 387 ~evSAktg~nv~~lf~~i~~~ 407 (452)
++|||++|.||+++|+.+++.
T Consensus 153 ~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 153 LECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred EEecccccCCHHHHHHHHHHh
Confidence 999999999999999999864
No 63
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.95 E-value=1e-26 Score=207.38 Aligned_cols=160 Identities=29% Similarity=0.556 Sum_probs=139.7
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|++|||||||+++|+++.+...+.++++..+ ...+.+ ++..+.+.+|||+|+++|..++..+++.+|+++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i 77 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI---DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 77 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEE---CCEEEEEEEEECCCCcchHHHHHHHHhcCCEEE
Confidence 6899999999999999999999888888888887554 444555 777888999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHH
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS 400 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~l 400 (452)
+|||+++..+|+++..|+..+.+.. ...++|++||+||+|+.++....+++.+++..++.. ++++||++|.|++++
T Consensus 78 ~v~~~~~~~s~~~~~~~~~~i~~~~---~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l 153 (162)
T cd04138 78 CVFAINSRKSFEDIHTYREQIKRVK---DSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIP-YIETSAKTRQGVEEA 153 (162)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECcccccceecHHHHHHHHHHhCCe-EEEecCCCCCCHHHH
Confidence 9999999999999999988887652 235789999999999987666777888888888875 999999999999999
Q ss_pred HHHHHHHH
Q psy14768 401 MNFLVDRI 408 (452)
Q Consensus 401 f~~i~~~i 408 (452)
|+++++.+
T Consensus 154 ~~~l~~~~ 161 (162)
T cd04138 154 FYTLVREI 161 (162)
T ss_pred HHHHHHHh
Confidence 99998754
No 64
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.95 E-value=9.1e-27 Score=208.46 Aligned_cols=159 Identities=33% Similarity=0.656 Sum_probs=144.7
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|++|+|||||++++++..+...+.++.+.++....+.+ ++..+.+.+|||+|+++|..++..+++++|++|
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i 77 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRV---GGKRVKLQIWDTAGQERFRSVTRSYYRGAAGAL 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE---CCEEEEEEEEECcchHHHHHhHHHHhcCCCEEE
Confidence 58999999999999999999999988888899998888877777 788899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~ 399 (452)
+|||++++.+|+.+..|+..+... ...++|++||+||+|+.+ +.+..+++..++...++. |+++||+++.|+++
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~ 152 (161)
T cd04113 78 LVYDITNRTSFEALPTWLSDARAL----ASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLL-FLETSALTGENVEE 152 (161)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCE-EEEEECCCCCCHHH
Confidence 999999999999999999988766 456799999999999976 677888899999998854 99999999999999
Q ss_pred HHHHHHHH
Q psy14768 400 SMNFLVDR 407 (452)
Q Consensus 400 lf~~i~~~ 407 (452)
+|+++++.
T Consensus 153 ~~~~~~~~ 160 (161)
T cd04113 153 AFLKCARS 160 (161)
T ss_pred HHHHHHHh
Confidence 99999875
No 65
>PLN03108 Rab family protein; Provisional
Probab=99.95 E-value=2.6e-26 Score=215.60 Aligned_cols=164 Identities=29% Similarity=0.617 Sum_probs=148.3
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.+||+++|++++|||||++++++..+...+.++++.++....+.+ ++..+.+.+|||+|++.|..++..+++.+|++
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~---~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI---DNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEE---CCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 589999999999999999999998888888899998888777777 78888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
|+|||+++..+|+.+..|+..+... .....|+++|+||+|+.+ +.+..++++++++.+++. |+++||+++.||+
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~----~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~ 157 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQH----ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVE 157 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence 9999999999999999998887665 345799999999999976 677888999999998875 9999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy14768 399 DSMNFLVDRIICS 411 (452)
Q Consensus 399 ~lf~~i~~~i~~~ 411 (452)
++|+++++.+.+.
T Consensus 158 e~f~~l~~~~~~~ 170 (210)
T PLN03108 158 EAFIKTAAKIYKK 170 (210)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 66
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.95 E-value=1.1e-26 Score=208.47 Aligned_cols=161 Identities=25% Similarity=0.524 Sum_probs=139.5
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
++||+++|.+|+|||||+++++.+.+...+.++++ ++....+.+ ++..+.+.||||+|+++|..++..+++++|++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ 76 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEV---DSSPSVLEILDTAGTEQFASMRDLYIKNGQGF 76 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEE---CCEEEEEEEEECCCcccccchHHHHHhhCCEE
Confidence 37899999999999999999999988888877775 555566666 78888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
|+|||+++..||+++..|+..+.+.. ...++|++||+||+|+.+ ..+..++...++..++. +++++||++|.|++
T Consensus 77 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~ 152 (163)
T cd04176 77 IVVYSLVNQQTFQDIKPMRDQIVRVK---GYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGC-PFMETSAKSKTMVN 152 (163)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCC-EEEEecCCCCCCHH
Confidence 99999999999999999988887652 235799999999999965 55666677888888776 49999999999999
Q ss_pred HHHHHHHHHH
Q psy14768 399 DSMNFLVDRI 408 (452)
Q Consensus 399 ~lf~~i~~~i 408 (452)
++|.++++.+
T Consensus 153 ~l~~~l~~~l 162 (163)
T cd04176 153 ELFAEIVRQM 162 (163)
T ss_pred HHHHHHHHhc
Confidence 9999998754
No 67
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.94 E-value=1.4e-26 Score=215.50 Aligned_cols=158 Identities=28% Similarity=0.585 Sum_probs=140.1
Q ss_pred eeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeC
Q psy14768 246 TGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDL 325 (452)
Q Consensus 246 vG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~ 325 (452)
+|.++||||||+++|+.+.+...+.+|++.++....+.+ ++..+.+.||||+|+++|..++..+++++|++|+|||+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~---~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~ 77 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT---NRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDV 77 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE---CCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEEC
Confidence 699999999999999998888888999999998888777 88899999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHH
Q psy14768 326 TNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLV 405 (452)
Q Consensus 326 t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~ 405 (452)
++..||+.+..|+..+.+.+ .++|++||+||+|+.++.+..+. ..++...++. |++|||++|.||.++|++++
T Consensus 78 t~~~S~~~i~~w~~~i~~~~-----~~~piilvgNK~Dl~~~~v~~~~-~~~~~~~~~~-~~e~SAk~~~~v~~~F~~l~ 150 (200)
T smart00176 78 TARVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDVKDRKVKAKS-ITFHRKKNLQ-YYDISAKSNYNFEKPFLWLA 150 (200)
T ss_pred CChHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccccCCHHH-HHHHHHcCCE-EEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999998762 47999999999999765555544 3677777766 99999999999999999999
Q ss_pred HHHHHhhh
Q psy14768 406 DRIICSKR 413 (452)
Q Consensus 406 ~~i~~~~~ 413 (452)
+.+.....
T Consensus 151 ~~i~~~~~ 158 (200)
T smart00176 151 RKLIGDPN 158 (200)
T ss_pred HHHHhccc
Confidence 99876533
No 68
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.94 E-value=2.1e-26 Score=206.01 Aligned_cols=158 Identities=30% Similarity=0.658 Sum_probs=142.0
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecC--CeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG--GRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~--~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
+||+++|.+|+|||||++++.++.+...+.++++.++....+.+ . +..+.+.+|||+|+++|..++..+++++|+
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 77 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFL---RQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQA 77 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEE---cCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCE
Confidence 48999999999999999999999888888899998887766666 4 677899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+++|||++++.+|+.+..|+..+... ..++|++||+||+|+.. ..+..+++..+++.+++. ++++||++|.|+
T Consensus 78 ~v~v~d~~~~~s~~~l~~~~~~~~~~-----~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~v 151 (162)
T cd04106 78 CILVFSTTDRESFEAIESWKEKVEAE-----CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLP-LFRTSVKDDFNV 151 (162)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh-----CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EEEEECCCCCCH
Confidence 99999999999999999999988764 25799999999999976 667778889999998875 999999999999
Q ss_pred HHHHHHHHHH
Q psy14768 398 EDSMNFLVDR 407 (452)
Q Consensus 398 ~~lf~~i~~~ 407 (452)
+++|+++...
T Consensus 152 ~~l~~~l~~~ 161 (162)
T cd04106 152 TELFEYLAEK 161 (162)
T ss_pred HHHHHHHHHh
Confidence 9999998753
No 69
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.94 E-value=1.2e-26 Score=214.08 Aligned_cols=160 Identities=24% Similarity=0.438 Sum_probs=139.3
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII 321 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl 321 (452)
||+++|++|||||||+++|.++.+...+.+|++.++. ..+.. ++..+.+.||||+|++.|..++..+++.+|++|+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~---~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~il 77 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFV---DGLHIELSLWDTAGQEEFDRLRSLSYADTDVIML 77 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEE---CCEEEEEEEEECCCChhccccccccccCCCEEEE
Confidence 7999999999999999999999998888888887664 34455 7778999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C------------cccHHHHHHHHHHcCCCEEE
Q psy14768 322 MFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R------------QVEINEIEAVCHQYNFMSWI 387 (452)
Q Consensus 322 V~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~------------~~~~e~~~~~~~~~~~~~~~ 387 (452)
|||+++..||+.+. .|+..+... ..+.|++||+||+|+.+ + .+..+++.+++...+...|+
T Consensus 78 v~dv~~~~sf~~~~~~~~~~i~~~-----~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 152 (189)
T cd04134 78 CFSVDSPDSLENVESKWLGEIREH-----CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYL 152 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEE
Confidence 99999999999996 588888765 24799999999999965 2 34567788888888866699
Q ss_pred EecCCCCccHHHHHHHHHHHHHH
Q psy14768 388 EVSSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 388 evSAktg~nv~~lf~~i~~~i~~ 410 (452)
+|||++|.||+++|+++++.++.
T Consensus 153 e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 153 ECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred EccCCcCCCHHHHHHHHHHHHhc
Confidence 99999999999999999998873
No 70
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.94 E-value=2e-26 Score=208.15 Aligned_cols=161 Identities=27% Similarity=0.575 Sum_probs=139.5
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|++|||||||+++++.+.+...+.++.+.++....+.. ++..+.+.+|||+|++.+..++..++..+|++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHT---NRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAI 77 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE---CCEEEEEEEEECCCChhhccccHHHhcCCCEEE
Confidence 58999999999999999999988888888899988887777766 778899999999999999999899999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHH
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS 400 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~l 400 (452)
+|||++++.+|+.+..|+..+.... .++|++||+||+|+.++.+.. +..++....+. .|+++||++|.||+++
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~piiiv~nK~Dl~~~~~~~-~~~~~~~~~~~-~~~e~Sa~~~~~v~~~ 150 (166)
T cd00877 78 IMFDVTSRVTYKNVPNWHRDLVRVC-----GNIPIVLCGNKVDIKDRKVKA-KQITFHRKKNL-QYYEISAKSNYNFEKP 150 (166)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-----CCCcEEEEEEchhcccccCCH-HHHHHHHHcCC-EEEEEeCCCCCChHHH
Confidence 9999999999999999999998762 379999999999997544333 34456655444 4999999999999999
Q ss_pred HHHHHHHHHHh
Q psy14768 401 MNFLVDRIICS 411 (452)
Q Consensus 401 f~~i~~~i~~~ 411 (452)
|+++++.+.+.
T Consensus 151 f~~l~~~~~~~ 161 (166)
T cd00877 151 FLWLARKLLGN 161 (166)
T ss_pred HHHHHHHHHhc
Confidence 99999888753
No 71
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.94 E-value=3.2e-26 Score=205.64 Aligned_cols=161 Identities=23% Similarity=0.466 Sum_probs=138.9
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|.+|||||||+++++++.+...+.++.+.++....+.+ ++..+.+.+|||+|+++|..++..+++++|++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKF---EGKTILVDFWDTAGQERFQTMHASYYHKAHACI 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEE---CCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEE
Confidence 58999999999999999999998888887788877776666666 788899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHH
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS 400 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~l 400 (452)
+|||++++.+|+++..|+..+... ..++|++||+||+|+... ..++...++...++. ++++||++|.|++++
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~i~~~-----~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l 149 (161)
T cd04124 78 LVFDVTRKITYKNLSKWYEELREY-----RPEIPCIVVANKIDLDPS--VTQKKFNFAEKHNLP-LYYVSAADGTNVVKL 149 (161)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-----CCCCcEEEEEECccCchh--HHHHHHHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence 999999999999999999998765 246899999999998532 234455666666654 999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy14768 401 MNFLVDRIICSK 412 (452)
Q Consensus 401 f~~i~~~i~~~~ 412 (452)
|+.+++.+.+++
T Consensus 150 ~~~l~~~~~~~~ 161 (161)
T cd04124 150 FQDAIKLAVSYK 161 (161)
T ss_pred HHHHHHHHHhcC
Confidence 999999887653
No 72
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.94 E-value=3.6e-26 Score=205.08 Aligned_cols=161 Identities=28% Similarity=0.537 Sum_probs=139.1
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|++|||||||++++++..+...+.++++. .....+.. ++..+.+.+|||+|+++|..++..+++.+|+++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~---~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i 76 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIED-SYRKQIEI---DGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFL 76 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhh-hEEEEEEE---CCEEEEEEEEECCCcccchHHHHHHHhhCCEEE
Confidence 48999999999999999999998888887777763 33445555 778899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~ 399 (452)
+|||++++.+|+.+..|...+.+.. ...++|+++|+||+|+.+ +....+++..+++.++. +|+++||++|.|+++
T Consensus 77 ~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~ 152 (164)
T smart00173 77 LVYSITDRQSFEEIKKFREQILRVK---DRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGC-PFLETSAKERVNVDE 152 (164)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccceEcHHHHHHHHHHcCC-EEEEeecCCCCCHHH
Confidence 9999999999999999988876652 234689999999999976 56677788888888885 499999999999999
Q ss_pred HHHHHHHHHH
Q psy14768 400 SMNFLVDRII 409 (452)
Q Consensus 400 lf~~i~~~i~ 409 (452)
+|+++++.+.
T Consensus 153 l~~~l~~~~~ 162 (164)
T smart00173 153 AFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHh
Confidence 9999998664
No 73
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.94 E-value=3e-26 Score=213.18 Aligned_cols=169 Identities=20% Similarity=0.264 Sum_probs=139.1
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh--------hhhhh
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC--------MSRVY 312 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~--------~~~~~ 312 (452)
+||+++|.+|||||||+++|+++.+...+.++++.++....+.+ ++..+.+.||||+|++.|.. ....+
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~---~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~ 77 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVL---SGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRG 77 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEE---CCEEEEEEEEeCCCcccCCccchhHHHHHHHhh
Confidence 58999999999999999999999888888899987776666666 88889999999999765431 12345
Q ss_pred hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHH-cCCCEEEEec
Q psy14768 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQ-YNFMSWIEVS 390 (452)
Q Consensus 313 i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~-~~~~~~~evS 390 (452)
++.+|++|+|||++++.||+.+..|+..+.+... ....++|++||+||+|+.+ +.+..++++.++.+ .++ +|++||
T Consensus 78 ~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~-~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~e~S 155 (198)
T cd04142 78 LRNSRAFILVYDICSPDSFHYVKLLRQQILETRP-AGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKC-GYLECS 155 (198)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc-cCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCC-cEEEec
Confidence 8899999999999999999999999888876520 0136799999999999976 56667777777654 455 499999
Q ss_pred CCCCccHHHHHHHHHHHHHHhhhh
Q psy14768 391 SKEHLMIEDSMNFLVDRIICSKRM 414 (452)
Q Consensus 391 Aktg~nv~~lf~~i~~~i~~~~~~ 414 (452)
|++|.||+++|+.+++.+....+.
T Consensus 156 ak~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 156 AKYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred CCCCCCHHHHHHHHHHHhhccCCC
Confidence 999999999999999988866553
No 74
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.94 E-value=5.9e-26 Score=203.35 Aligned_cols=161 Identities=29% Similarity=0.513 Sum_probs=139.6
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.+||+++|.+|+|||||+++++++.+...+.++++..+ .....+ ++..+.+.+|||+|+++|..++..+++.+|++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 77 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEI---DGQWAILDILDTAGQEEFSAMREQYMRTGEGF 77 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEE---CCEEEEEEEEECCCCcchhHHHHHHHhhCCEE
Confidence 47999999999999999999999888878878777544 344455 77788999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
++|||+++..+|+.+..|...+.+.. ...+.|++||+||+|+.. ..+..++..++++.+++. ++++||++|.||+
T Consensus 78 ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~ 153 (164)
T cd04145 78 LLVFSVTDRGSFEEVDKFHTQILRVK---DRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIP-YIETSAKDRLNVD 153 (164)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh---CCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCc-EEEeeCCCCCCHH
Confidence 99999999999999999998887652 235789999999999976 556777888898888875 9999999999999
Q ss_pred HHHHHHHHHH
Q psy14768 399 DSMNFLVDRI 408 (452)
Q Consensus 399 ~lf~~i~~~i 408 (452)
++|+++++.+
T Consensus 154 ~l~~~l~~~~ 163 (164)
T cd04145 154 KAFHDLVRVI 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 75
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.94 E-value=5.7e-26 Score=205.74 Aligned_cols=162 Identities=30% Similarity=0.570 Sum_probs=144.3
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh-hhhhhhhcCCCE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI-CMSRVYYQNSDG 318 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~-~~~~~~i~~ad~ 318 (452)
.+||+++|++|+|||||+++++...+...+.++++.++....+.+ ++..+.+.+|||+|+++|. .++..+++++|+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~ 78 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEI---DGERIKVQLWDTAGQERFRKSMVQHYYRNVHA 78 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEE---CCeEEEEEEEeCCChHHHHHhhHHHhhcCCCE
Confidence 378999999999999999999998888888899998888777777 8888999999999999887 578889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCC---C
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKE---H 394 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAkt---g 394 (452)
+|+|||++++.+|+.+..|...+.... ...++|++||+||+|+.+ +++..++++++++..+.. |+++||++ +
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~~ 154 (170)
T cd04115 79 VVFVYDVTNMASFHSLPSWIEECEQHS---LPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMP-LFETSAKDPSEN 154 (170)
T ss_pred EEEEEECCCHHHHHhHHHHHHHHHHhc---CCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCc-EEEEeccCCcCC
Confidence 999999999999999999999887752 235799999999999976 677788888999888765 99999999 8
Q ss_pred ccHHHHHHHHHHHH
Q psy14768 395 LMIEDSMNFLVDRI 408 (452)
Q Consensus 395 ~nv~~lf~~i~~~i 408 (452)
.+|+++|..+++.+
T Consensus 155 ~~i~~~f~~l~~~~ 168 (170)
T cd04115 155 DHVEAIFMTLAHKL 168 (170)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998765
No 76
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.94 E-value=4e-26 Score=206.92 Aligned_cols=159 Identities=26% Similarity=0.480 Sum_probs=138.7
Q ss_pred EEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEE
Q psy14768 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIM 322 (452)
Q Consensus 243 I~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV 322 (452)
|+++|++|||||||+++|+++.+...+.++++..+. ..+.. ++..+.+.+|||+|+++|..++..+++.+|++|+|
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 76 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEV---DGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLIC 76 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEE---CCEEEEEEEEECCCCcccchhchhhcCCCCEEEEE
Confidence 579999999999999999999998888888775553 44555 78889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCCEEEE
Q psy14768 323 FDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFMSWIE 388 (452)
Q Consensus 323 ~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~~~~e 388 (452)
||+++..||+++. .|+..+... ..++|++||+||+|+.. +.+..+++.++++.++...|++
T Consensus 77 ~d~~~~~s~~~~~~~~~~~i~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 151 (174)
T smart00174 77 FSVDSPASFENVKEKWYPEVKHF-----CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLE 151 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEE
Confidence 9999999999996 588888765 35799999999999864 2367788889999999866999
Q ss_pred ecCCCCccHHHHHHHHHHHHHH
Q psy14768 389 VSSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 389 vSAktg~nv~~lf~~i~~~i~~ 410 (452)
|||++|.||+++|+.+++.+.+
T Consensus 152 ~Sa~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 152 CSALTQEGVREVFEEAIRAALN 173 (174)
T ss_pred ecCCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999988753
No 77
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.94 E-value=9.4e-26 Score=201.86 Aligned_cols=162 Identities=38% Similarity=0.690 Sum_probs=146.5
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|++|+|||||++++.+..+...+.++++.++....+.+ ++..+.+.+||++|+++|..++..+++.+|++|
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 77 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEV---DGKRVKLQIWDTAGQERFRSITSSYYRGAVGAL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE---CCEEEEEEEEECCChHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999998888888889998888777777 788889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~ 399 (452)
+|||++++.+++.+..|+..+... ...++|+++|+||+|+.. .+...+.++++++..++. ++++||++|.|+++
T Consensus 78 lv~d~~~~~s~~~~~~~l~~~~~~----~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~~ 152 (164)
T smart00175 78 LVYDITNRESFENLKNWLKELREY----ADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLP-FFETSAKTNTNVEE 152 (164)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHH
Confidence 999999999999999999998877 346799999999999876 667788889999988876 99999999999999
Q ss_pred HHHHHHHHHHH
Q psy14768 400 SMNFLVDRIIC 410 (452)
Q Consensus 400 lf~~i~~~i~~ 410 (452)
+|+++.+.+.+
T Consensus 153 l~~~i~~~~~~ 163 (164)
T smart00175 153 AFEELAREILK 163 (164)
T ss_pred HHHHHHHHHhh
Confidence 99999988754
No 78
>PLN03118 Rab family protein; Provisional
Probab=99.94 E-value=1.2e-25 Score=211.09 Aligned_cols=166 Identities=31% Similarity=0.580 Sum_probs=142.8
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..+||+++|.+|||||||+++|+++.+ ..+.++++.++....+.+ ++..+.+.||||+|+++|..++..+++.+|+
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~---~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTV---GGKRLKLTIWDTAGQERFRTLTSSYYRNAQG 88 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEE---CCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 358999999999999999999998766 466788888887777776 7788899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHH-HHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768 319 CIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM 396 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~-~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n 396 (452)
+|+|||+++..+|+++.. |...+.... ...+.|++||+||+|+.. +.+..++...++...++. |+++||+++.|
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~---~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~-~~e~SAk~~~~ 164 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYS---TNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCL-FLECSAKTREN 164 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCE-EEEEeCCCCCC
Confidence 999999999999999975 666665441 234689999999999976 566777888888888775 99999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy14768 397 IEDSMNFLVDRIICSK 412 (452)
Q Consensus 397 v~~lf~~i~~~i~~~~ 412 (452)
++++|+++++.+.+..
T Consensus 165 v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 165 VEQCFEELALKIMEVP 180 (211)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999997654
No 79
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.94 E-value=7.6e-26 Score=202.16 Aligned_cols=159 Identities=32% Similarity=0.595 Sum_probs=143.2
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|++|+|||||++++++..+...+.++++.++....+.+ ++..+.+.+|||+|++++..++..+++.+|++|
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii 77 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYL---EDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEE---CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 47999999999999999999999888888999999998888887 777789999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~ 399 (452)
+|||++++.+|+.+..|+..+... ...+.|+++|+||+|+.+ .....++...+.+..+.. ++++||+++.|+++
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~ 152 (161)
T cd01861 78 VVYDITNRQSFDNTDKWIDDVRDE----RGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAM-FIETSAKAGHNVKE 152 (161)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh----CCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCE-EEEEeCCCCCCHHH
Confidence 999999999999999999988765 334799999999999955 667778888888888755 99999999999999
Q ss_pred HHHHHHHH
Q psy14768 400 SMNFLVDR 407 (452)
Q Consensus 400 lf~~i~~~ 407 (452)
+|+++.+.
T Consensus 153 l~~~i~~~ 160 (161)
T cd01861 153 LFRKIASA 160 (161)
T ss_pred HHHHHHHh
Confidence 99999875
No 80
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.94 E-value=7.5e-26 Score=203.84 Aligned_cols=160 Identities=25% Similarity=0.426 Sum_probs=137.1
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|.+|||||||+++++++.+...+.++++..+ ...+.. +...+.+.+|||+|+++|..++..+++.+|++|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 77 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISC---SKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 77 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEE---CCEEEEEEEEECCCCCcchHHHHHHhhcCCEEE
Confidence 6899999999999999999999988888888877544 333444 667889999999999999999889999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~ 399 (452)
+|||+++..+|+.+..|+..+..... ....++|++||+||+|+.+ +.+..+++..++..++.. |+++||++|.||++
T Consensus 78 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SA~~g~~v~~ 155 (165)
T cd04140 78 LVYSVTSKQSLEELKPIYELICEIKG-NNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCA-FMETSAKTNHNVQE 155 (165)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhc-CCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCc-EEEeecCCCCCHHH
Confidence 99999999999999999888776521 1225799999999999976 677777888888888775 99999999999999
Q ss_pred HHHHHHH
Q psy14768 400 SMNFLVD 406 (452)
Q Consensus 400 lf~~i~~ 406 (452)
+|++++.
T Consensus 156 ~f~~l~~ 162 (165)
T cd04140 156 LFQELLN 162 (165)
T ss_pred HHHHHHh
Confidence 9999874
No 81
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.94 E-value=1.6e-25 Score=202.11 Aligned_cols=168 Identities=33% Similarity=0.644 Sum_probs=147.7
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|++|+|||||++++.+..+...+.++.+.++....+.+ .+..+.+.+||++|++.|..++..+++++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 77 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTV---DDKLVTLQIWDTAGQERFQSLGVAFYRGADCCV 77 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEE---CCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEE
Confidence 48999999999999999999998888888888888887777777 778899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~ 399 (452)
+|||++++.+|+.+..|...+..........++|+++|+||+|+.+ .....++.+.+++..+...++++||++|.|+++
T Consensus 78 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 157 (172)
T cd01862 78 LVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQ 157 (172)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHH
Confidence 9999999999999988988776653333345799999999999984 566778888899988866799999999999999
Q ss_pred HHHHHHHHHHHh
Q psy14768 400 SMNFLVDRIICS 411 (452)
Q Consensus 400 lf~~i~~~i~~~ 411 (452)
+|+++++.+.+.
T Consensus 158 l~~~i~~~~~~~ 169 (172)
T cd01862 158 AFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHhc
Confidence 999999988765
No 82
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=6.7e-26 Score=210.24 Aligned_cols=157 Identities=22% Similarity=0.329 Sum_probs=129.4
Q ss_pred cccEEEeeecccCCcceee-ecccc-----ccccccCCccee-eeEEEEE--------EeeecCCeeEEEEEEecCCcch
Q psy14768 240 TYPILITGDSTVGKTSYVQ-GFVQN-----KFLDNYKNTVGV-DFSTKLL--------SHKKYGGRPVKLQIWDIAGQDR 304 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin-~l~~~-----~~~~~~~~t~~~-d~~~~~i--------~~~~~~~~~~~l~l~DtaG~e~ 304 (452)
.+||+++|+++||||||+. ++.++ .+...+.||++. +...... .+ ++..+.+.||||+|++.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~---~~~~v~l~iwDTaG~~~ 78 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV---DGVSVSLRLWDTFGDHD 78 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceee---CCEEEEEEEEeCCCChh
Confidence 4799999999999999995 55443 355677888863 3222221 34 78899999999999986
Q ss_pred hhhhhhhhhcCCCEEEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-----------------
Q psy14768 305 YICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD----------------- 366 (452)
Q Consensus 305 ~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~----------------- 366 (452)
+ ++..+++++|++|+|||++++.||+.+. .|+..+... ..+.|++|||||+||.+
T Consensus 79 ~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~-----~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~ 151 (195)
T cd01873 79 K--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF-----CPRVPVILVGCKLDLRYADLDEVNRARRPLARPI 151 (195)
T ss_pred h--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh-----CCCCCEEEEEEchhccccccchhhhccccccccc
Confidence 3 4567899999999999999999999997 598888765 24689999999999852
Q ss_pred ---CcccHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHH
Q psy14768 367 ---RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 367 ---~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~ 407 (452)
+.+..++++++++++++ +|+||||++|.||+++|+.++++
T Consensus 152 ~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 152 KNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred ccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 57788999999999998 59999999999999999999864
No 83
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.94 E-value=1.6e-25 Score=200.41 Aligned_cols=161 Identities=30% Similarity=0.600 Sum_probs=145.4
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
++||+++|++|+|||||+++++++.+...+.++.+.++....+.+ ++..+.+.+||++|+++|..++..+++++|++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 77 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNL---DDTTVKFEIWDTAGQERYRSLAPMYYRGAAAA 77 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE---CCEEEEEEEEeCCchHHHHHHHHHHhccCCEE
Confidence 379999999999999999999999888778888888887778777 88889999999999999999998999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
|+|||++++.+|+.+..|+..+... .....|+++|+||+|+.. +....++...++...+.. ++++||++|.|++
T Consensus 78 i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~ 152 (163)
T cd01860 78 IVVYDITSEESFEKAKSWVKELQRN----ASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLL-FFETSAKTGENVN 152 (163)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCE-EEEEECCCCCCHH
Confidence 9999999999999999999998876 346799999999999875 667788888899988855 9999999999999
Q ss_pred HHHHHHHHHH
Q psy14768 399 DSMNFLVDRI 408 (452)
Q Consensus 399 ~lf~~i~~~i 408 (452)
++|+++++.+
T Consensus 153 ~l~~~l~~~l 162 (163)
T cd01860 153 ELFTEIAKKL 162 (163)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 84
>KOG0395|consensus
Probab=99.94 E-value=2.2e-25 Score=206.22 Aligned_cols=167 Identities=29% Similarity=0.510 Sum_probs=154.5
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.+||+++|.+|||||+|+.+|+...|+..|.||+. |.+.+.+.+ ++..+.+.|+||+|++.|..++..+++++|++
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v---~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF 78 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTV---DGEVCMLEILDTAGQEEFSAMRDLYIRNGDGF 78 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEE---CCEEEEEEEEcCCCcccChHHHHHhhccCcEE
Confidence 58999999999999999999999999999999999 777888888 89999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
++||++++..||+.+..++..|.+.. ....+|++|||||+|+.. +++..++++.++..+++. |+|+||+.+.||+
T Consensus 79 ~lVysitd~~SF~~~~~l~~~I~r~~---~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~-f~E~Sak~~~~v~ 154 (196)
T KOG0395|consen 79 LLVYSITDRSSFEEAKQLREQILRVK---GRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCA-FIETSAKLNYNVD 154 (196)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhh---CcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCc-EEEeeccCCcCHH
Confidence 99999999999999999988885542 345689999999999998 999999999999999998 9999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q psy14768 399 DSMNFLVDRIICSKRM 414 (452)
Q Consensus 399 ~lf~~i~~~i~~~~~~ 414 (452)
++|..+++.+...+..
T Consensus 155 ~~F~~L~r~~~~~~~~ 170 (196)
T KOG0395|consen 155 EVFYELVREIRLPREG 170 (196)
T ss_pred HHHHHHHHHHHhhhcc
Confidence 9999999998875443
No 85
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=5.1e-26 Score=206.20 Aligned_cols=162 Identities=17% Similarity=0.279 Sum_probs=140.4
Q ss_pred CcccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
..+||+++|.+|||||||+++|+++.+. ..+.+|++.++....+.+ ++..+.+.+||++|++.+..++..+++++|
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~---~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d 79 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEV---YGQEKYLILREVGEDEVAILLNDAELAACD 79 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEE---CCeEEEEEEEecCCcccccccchhhhhcCC
Confidence 3589999999999999999999999888 888999998887777777 788889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM 396 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n 396 (452)
++|+|||++++.+|+.+..|+..+... .++|+++|+||+|+.+ +.+..++..++++.++...++++||++|.|
T Consensus 80 ~~llv~d~~~~~s~~~~~~~~~~~~~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (169)
T cd01892 80 VACLVYDSSDPKSFSYCAEVYKKYFML------GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDS 153 (169)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHhccC------CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCcc
Confidence 999999999999999998888765322 3699999999999965 444445567788888875579999999999
Q ss_pred HHHHHHHHHHHHH
Q psy14768 397 IEDSMNFLVDRII 409 (452)
Q Consensus 397 v~~lf~~i~~~i~ 409 (452)
++++|+.+++.+.
T Consensus 154 v~~lf~~l~~~~~ 166 (169)
T cd01892 154 SNELFTKLATAAQ 166 (169)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998875
No 86
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.93 E-value=1.8e-25 Score=200.53 Aligned_cols=160 Identities=29% Similarity=0.485 Sum_probs=139.4
Q ss_pred ccEEEeeecccCCcceeeecccc--ccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQN--KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~--~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
+||+++|+++||||||++++..+ .+...+.++++.++....+.+. .+..+.+.+|||+|++.+..++..+++++|+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 78 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVD--TDNTVELFIFDSAGQELYSDMVSNYWESPSV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeC--CCCEEEEEEEECCCHHHHHHHHHHHhCCCCE
Confidence 48999999999999999999864 6778888999988877776662 3567999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|+|||+++..+|+.+..|+..+... ..++|+++|+||+|+.+ .++..++.+.+...++.. |+++||+++.|+
T Consensus 79 ii~v~d~~~~~s~~~~~~~~~~~~~~-----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 152 (164)
T cd04101 79 FILVYDVSNKASFENCSRWVNKVRTA-----SKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLK-FFKTSALRGVGY 152 (164)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh-----CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEeCCCCCCh
Confidence 99999999999999999999988776 25689999999999976 556666777777777765 999999999999
Q ss_pred HHHHHHHHHHH
Q psy14768 398 EDSMNFLVDRI 408 (452)
Q Consensus 398 ~~lf~~i~~~i 408 (452)
+++|+.+++.+
T Consensus 153 ~~l~~~l~~~~ 163 (164)
T cd04101 153 EEPFESLARAF 163 (164)
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 87
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.93 E-value=1.5e-25 Score=215.31 Aligned_cols=165 Identities=28% Similarity=0.451 Sum_probs=140.9
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|.+|||||||+++|+++.+...+.+|++ ++....+.+ ++..+.+.||||+|++.|..++..++..+|++|
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i---~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iI 76 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSI---RGEVYQLDILDTSGNHPFPAMRRLSILTGDVFI 76 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEE---CCEEEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 5899999999999999999999888888888886 666666666 888899999999999999999888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhh-----cCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCC
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCIL-----DNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEH 394 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~-----~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg 394 (452)
+|||+++..||+++..|+..+...... ....++|+|||+||+|+.+ +++..+++.+++.......|+++||++|
T Consensus 77 lVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg 156 (247)
T cd04143 77 LVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKN 156 (247)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 999999999999999998888654110 1235799999999999976 6778888888876544445999999999
Q ss_pred ccHHHHHHHHHHHHH
Q psy14768 395 LMIEDSMNFLVDRII 409 (452)
Q Consensus 395 ~nv~~lf~~i~~~i~ 409 (452)
.||+++|++++....
T Consensus 157 ~gI~elf~~L~~~~~ 171 (247)
T cd04143 157 SNLDEMFRALFSLAK 171 (247)
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999998654
No 88
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.93 E-value=2.8e-25 Score=200.65 Aligned_cols=164 Identities=26% Similarity=0.519 Sum_probs=143.1
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
++||+++|.+|+|||||++++.++.+...+.++++..+ ...+.+ ++..+.+.+|||+|+++|..++..+++.++++
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 76 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEI---DGRQCDLEILDTAGTEQFTAMRELYIKSGQGF 76 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEE---CCEEEEEEEEeCCCcccchhhhHHHHhhCCEE
Confidence 36899999999999999999999888888888887554 455556 77889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
++|||++++.+++.+..|...+.+.. ...++|+++|+||.|+.+ +....++...+.+.++..+++++||+++.|++
T Consensus 77 vlv~~~~~~~s~~~~~~~~~~i~~~~---~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~ 153 (168)
T cd04177 77 LLVYSVTSEASLNELGELREQVLRIK---DSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVD 153 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHH
Confidence 99999999999999999988887642 345799999999999976 66677788888888886669999999999999
Q ss_pred HHHHHHHHHHHH
Q psy14768 399 DSMNFLVDRIIC 410 (452)
Q Consensus 399 ~lf~~i~~~i~~ 410 (452)
++|++++..++.
T Consensus 154 ~~f~~i~~~~~~ 165 (168)
T cd04177 154 EVFIDLVRQIIC 165 (168)
T ss_pred HHHHHHHHHHhh
Confidence 999999987764
No 89
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.93 E-value=2.1e-25 Score=202.60 Aligned_cols=157 Identities=24% Similarity=0.461 Sum_probs=136.4
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+|++++|++|+|||||++++.++.+...+.+|. .+.....+.+ ++..+.+.+|||+|+++|..++..+++++|++|
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i 76 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLV---DGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFL 76 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEE---CCEEEEEEEEECCCChhhccccccccCCCcEEE
Confidence 589999999999999999999988888887776 4555556666 778899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCCEE
Q psy14768 321 IMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFMSW 386 (452)
Q Consensus 321 lV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~~~ 386 (452)
+|||++++.+|+.+. .|+..+... ..++|+++|+||+|+.. +.+..+++..+++..+...|
T Consensus 77 ~v~d~~~~~sf~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~ 151 (173)
T cd04130 77 LCFSVVNPSSFQNISEKWIPEIRKH-----NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEY 151 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeE
Confidence 999999999999985 688877754 24689999999999852 45677889999999998679
Q ss_pred EEecCCCCccHHHHHHHHHH
Q psy14768 387 IEVSSKEHLMIEDSMNFLVD 406 (452)
Q Consensus 387 ~evSAktg~nv~~lf~~i~~ 406 (452)
+++||++|.||+++|+.++.
T Consensus 152 ~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 152 IECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred EEEeCCCCCCHHHHHHHHHh
Confidence 99999999999999998875
No 90
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.93 E-value=2.8e-25 Score=198.65 Aligned_cols=160 Identities=33% Similarity=0.605 Sum_probs=142.6
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|++|+|||||++++.+..+...+.++.+.++....+.+ ++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 77 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTV---DGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVI 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEE---CCEEEEEEEEECCCchhhhhhhHHHhCCCCEEE
Confidence 58999999999999999999998887778889988887777766 778899999999999999988899999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHH
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS 400 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~l 400 (452)
+|||++++.+|+.+..|+..+.... ...+.|+++|+||+|+.......++..++....++. |+++||++|.|++++
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~ 153 (161)
T cd01863 78 LVYDVTRRDTFTNLETWLNELETYS---TNNDIVKMLVGNKIDKENREVTREEGLKFARKHNML-FIETSAKTRDGVQQA 153 (161)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhC---CCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCE-EEEEecCCCCCHHHH
Confidence 9999999999999999999887763 346799999999999987666778888888888765 999999999999999
Q ss_pred HHHHHHH
Q psy14768 401 MNFLVDR 407 (452)
Q Consensus 401 f~~i~~~ 407 (452)
|+++++.
T Consensus 154 ~~~~~~~ 160 (161)
T cd01863 154 FEELVEK 160 (161)
T ss_pred HHHHHHh
Confidence 9999875
No 91
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.93 E-value=1.7e-25 Score=200.61 Aligned_cols=154 Identities=21% Similarity=0.334 Sum_probs=129.0
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|++|||||||+.+++.+.+...+.++ +.++ ...+.+ ++..+.+.+|||+|++. ..+++++|+++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~---~~~~~~l~i~D~~g~~~-----~~~~~~~~~~i 70 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLV---DGQSHLLLIRDEGGAPD-----AQFASWVDAVI 70 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEE---CCEEEEEEEEECCCCCc-----hhHHhcCCEEE
Confidence 47999999999999999999988887665444 4344 355666 88889999999999975 34678899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|||+++..||+.+..|+..+.... ...+.|++||+||.|+.. +.+..++++++++..+...|++|||++|.||
T Consensus 71 lv~d~~~~~sf~~~~~~~~~i~~~~---~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i 147 (158)
T cd04103 71 FVFSLENEASFQTVYNLYHQLSSYR---NISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNV 147 (158)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCH
Confidence 9999999999999999999987662 235689999999999852 6788888999998875445999999999999
Q ss_pred HHHHHHHHHH
Q psy14768 398 EDSMNFLVDR 407 (452)
Q Consensus 398 ~~lf~~i~~~ 407 (452)
+++|..+++.
T Consensus 148 ~~~f~~~~~~ 157 (158)
T cd04103 148 ERVFQEAAQK 157 (158)
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 92
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.93 E-value=4.6e-25 Score=196.60 Aligned_cols=160 Identities=33% Similarity=0.603 Sum_probs=141.6
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|.+|+|||||++++++..+...+.++++.++....+.. .+..+.+.+||++|++.+..++..++.++|+++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 77 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNI---GGKRIDLAIWDTAGQERYHALGPIYYRDADGAI 77 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEE---CCEEEEEEEEECCchHHHHHhhHHHhccCCEEE
Confidence 58999999999999999999998887777778877777777766 677789999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~ 399 (452)
+|||++++.+++.+..|...+... ...++|+++|+||+|+.. ++...+++.++....+.. ++++||+++.|+++
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~gi~~ 152 (162)
T cd04123 78 LVYDITDADSFQKVKKWIKELKQM----RGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAK-HFETSAKTGKGIEE 152 (162)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHH
Confidence 999999999999999999998876 334799999999999986 666778888888888776 89999999999999
Q ss_pred HHHHHHHHH
Q psy14768 400 SMNFLVDRI 408 (452)
Q Consensus 400 lf~~i~~~i 408 (452)
+|+++.+.+
T Consensus 153 ~~~~l~~~~ 161 (162)
T cd04123 153 LFLSLAKRM 161 (162)
T ss_pred HHHHHHHHh
Confidence 999998765
No 93
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.93 E-value=4.9e-25 Score=199.76 Aligned_cols=159 Identities=24% Similarity=0.425 Sum_probs=137.3
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|.+|+|||||+++|..+.+...+.++++.. ....+.. ++..+.+.+|||+|++.|..++..+++.+|++|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 76 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTV---GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 76 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEE---CCEEEEEEEEeCCCcccccccccccCCCCCEEE
Confidence 489999999999999999999988887777776533 3445555 778888999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCCEE
Q psy14768 321 IMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFMSW 386 (452)
Q Consensus 321 lV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~~~ 386 (452)
+|||++++.+|+++. .|...+... ..++|++||+||+|+.+ +.+..+++..+++.++...|
T Consensus 77 lv~~~~~~~s~~~~~~~~~~~l~~~-----~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 151 (174)
T cd04135 77 ICFSVVNPASFQNVKEEWVPELKEY-----APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCY 151 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEE
Confidence 999999999999996 587777653 46799999999999854 25667888999999998779
Q ss_pred EEecCCCCccHHHHHHHHHHHH
Q psy14768 387 IEVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 387 ~evSAktg~nv~~lf~~i~~~i 408 (452)
++|||++|.||+++|+.+++.+
T Consensus 152 ~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 152 VECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred EEecCCcCCCHHHHHHHHHHHh
Confidence 9999999999999999999875
No 94
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.93 E-value=6.1e-25 Score=197.67 Aligned_cols=161 Identities=25% Similarity=0.424 Sum_probs=135.1
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh-hhhhhhhhcCCCEEE
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY-ICMSRVYYQNSDGCI 320 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~-~~~~~~~i~~ad~vI 320 (452)
||+++|++|+|||||+++++.+.+...+.++++..+ ...+.+ ++..+.+.+|||+|++++ ......+++.+|++|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i 76 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTI---DGEQVSLEILDTAGQQQADTEQLERSIRWADGFV 76 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEE---CCEEEEEEEEECCCCcccccchHHHHHHhCCEEE
Confidence 689999999999999999998888777777775444 344555 788889999999999853 445677899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCC-ccHH
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEH-LMIE 398 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg-~nv~ 398 (452)
+|||++++.||+.+..|+..+.... ....++|++||+||+|+.+ +.+..+++..+++.++.. |+++||++| .||+
T Consensus 77 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~~v~ 153 (165)
T cd04146 77 LVYSITDRSSFDEISQLKQLIREIK--KRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCL-FFEVSAAEDYDGVH 153 (165)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--cCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCE-EEEeCCCCCchhHH
Confidence 9999999999999999998887651 0135799999999999865 667788888999988865 999999999 5999
Q ss_pred HHHHHHHHHHH
Q psy14768 399 DSMNFLVDRII 409 (452)
Q Consensus 399 ~lf~~i~~~i~ 409 (452)
++|+.+++.+.
T Consensus 154 ~~f~~l~~~~~ 164 (165)
T cd04146 154 SVFHELCREVR 164 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998664
No 95
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.92 E-value=1e-24 Score=206.31 Aligned_cols=164 Identities=22% Similarity=0.346 Sum_probs=138.8
Q ss_pred ccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhc-CCCE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQ-NSDG 318 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~-~ad~ 318 (452)
+||+++|++|||||||+++|..+.+. ..+.++.+.++....+.+ ++..+.+.+|||+|++. .+...++. ++|+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~---~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~ 75 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSV---DGEESTLVVIDHWEQEM--WTEDSCMQYQGDA 75 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEE---CCEEEEEEEEeCCCcch--HHHhHHhhcCCCE
Confidence 58999999999999999999887776 666677766777777777 78889999999999982 33455667 9999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|+|||+++..+|+.+..|+..+.... ...++|+|||+||+|+.+ +++..++..+++..+++. |+++||+++.||
T Consensus 76 iilV~d~td~~S~~~~~~~~~~l~~~~---~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~SA~~~~gv 151 (221)
T cd04148 76 FVVVYSVTDRSSFERASELRIQLRRNR---QLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCK-FIETSAGLQHNV 151 (221)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCe-EEEecCCCCCCH
Confidence 999999999999999999998887652 235799999999999976 677778888888888875 999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy14768 398 EDSMNFLVDRIICSKR 413 (452)
Q Consensus 398 ~~lf~~i~~~i~~~~~ 413 (452)
+++|+++++.+.....
T Consensus 152 ~~l~~~l~~~~~~~~~ 167 (221)
T cd04148 152 DELLEGIVRQIRLRRD 167 (221)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 9999999998875443
No 96
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.92 E-value=1.6e-24 Score=198.99 Aligned_cols=172 Identities=19% Similarity=0.330 Sum_probs=136.0
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.+||+++|.+|||||||++++..+.+... .+|++.++....+... ++..+.+.+|||+|++++..++..+++++|++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~--~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 79 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLG--NSKGITFHFWDVGGQEKLRPLWKSYTRCTDGI 79 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeecc--CCCceEEEEEECCCcHhHHHHHHHHhccCCEE
Confidence 57999999999999999999998777654 6787777665555431 34678999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHH--cC---CCEEEEecCCCC
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQ--YN---FMSWIEVSSKEH 394 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~--~~---~~~~~evSAktg 394 (452)
|+|||+++..+++.+..|+..+.... ...++|++||+||+|+.+ ....+++..+... .. ..+++++||++|
T Consensus 80 i~v~D~~~~~~~~~~~~~~~~i~~~~---~~~~~p~iiv~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 155 (183)
T cd04152 80 VFVVDSVDVERMEEAKTELHKITRFS---ENQGVPVLVLANKQDLPN-ALSVSEVEKLLALHELSASTPWHVQPACAIIG 155 (183)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhhh---hcCCCcEEEEEECcCccc-cCCHHHHHHHhCccccCCCCceEEEEeecccC
Confidence 99999999999999988887776542 234699999999999864 2334445544431 11 124789999999
Q ss_pred ccHHHHHHHHHHHHHHhhhhhHHH
Q psy14768 395 LMIEDSMNFLVDRIICSKRMEEEA 418 (452)
Q Consensus 395 ~nv~~lf~~i~~~i~~~~~~~~~~ 418 (452)
.||+++|++|++.+.+.+++.+++
T Consensus 156 ~gi~~l~~~l~~~l~~~~~~~~~~ 179 (183)
T cd04152 156 EGLQEGLEKLYEMILKRRKMLRQQ 179 (183)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999998776655544
No 97
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=3.3e-24 Score=193.21 Aligned_cols=161 Identities=30% Similarity=0.560 Sum_probs=140.9
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.++|+++|.+|+|||||++++..+.+...+.++++.++....+.+ ++..+.+.+||++|++.|...+..+++.+|++
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI---KGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE---CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 489999999999999999999988877777888888887777777 78888999999999999999889999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
++|||++++.+|+.+..|+..+... ...+.|+++|+||+|+.+ +++..+..+.+.+.... .++++||++|.|++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~----~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~ 158 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQY----ANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDM-YYLETSAKESDNVE 158 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC-eEEEeeCCCCCCHH
Confidence 9999999999999999999888776 345699999999999975 66666667777776664 49999999999999
Q ss_pred HHHHHHHHHH
Q psy14768 399 DSMNFLVDRI 408 (452)
Q Consensus 399 ~lf~~i~~~i 408 (452)
++|+++.+.+
T Consensus 159 ~l~~~i~~~~ 168 (169)
T cd04114 159 KLFLDLACRL 168 (169)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 98
>KOG0393|consensus
Probab=99.92 E-value=1.5e-24 Score=197.02 Aligned_cols=165 Identities=24% Similarity=0.480 Sum_probs=150.5
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecC-CeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-GRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~-~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
.+|+.++|+..+|||+|+..+..+.|...|.||+. |-+...+.+ + ++.+.+.+||||||+.|..+++..|.++|+
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V---~dg~~v~L~LwDTAGqedYDrlRplsY~~tdv 79 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTV---DDGKPVELGLWDTAGQEDYDRLRPLSYPQTDV 79 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEe---cCCCEEEEeeeecCCCcccccccccCCCCCCE
Confidence 47999999999999999999999999999999998 444556666 6 999999999999999999999899999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCC
Q psy14768 319 CIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFM 384 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~ 384 (452)
||+||++.++.||+++. .|+.++.+++ ++.|+||||+|.||.+ ..+..++++++++++|..
T Consensus 80 fl~cfsv~~p~S~~nv~~kW~pEi~~~c-----p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~ 154 (198)
T KOG0393|consen 80 FLLCFSVVSPESFENVKSKWIPEIKHHC-----PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAV 154 (198)
T ss_pred EEEEEEcCChhhHHHHHhhhhHHHHhhC-----CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcc
Confidence 99999999999999985 6999999984 8899999999999973 367889999999999988
Q ss_pred EEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 385 SWIEVSSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 385 ~~~evSAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
.|+|+||++..|++++|+.++...+....
T Consensus 155 ~y~EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 155 KYLECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred eeeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence 89999999999999999999999987654
No 99
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.92 E-value=2.4e-24 Score=195.38 Aligned_cols=159 Identities=23% Similarity=0.438 Sum_probs=136.1
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
.||+++|+++||||||+++|.++.+...+.++++..+. ..+.+ ++..+.+.+|||+|++.|..++..++.++|+++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEV---DGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 77 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEE---CCEEEEEEEEeCCCchhhhhccccccCCCCEEE
Confidence 58999999999999999999999988888888876553 34555 778889999999999999988888899999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCCEE
Q psy14768 321 IMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFMSW 386 (452)
Q Consensus 321 lV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~~~ 386 (452)
+|||+++..+|+++. .|...+... ..++|+++|+||+|+.+ ..+..++.++++..++...|
T Consensus 78 ~v~~~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~ 152 (175)
T cd01870 78 MCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGY 152 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEE
Confidence 999999999999985 588877654 34689999999999854 12445778888888887779
Q ss_pred EEecCCCCccHHHHHHHHHHHH
Q psy14768 387 IEVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 387 ~evSAktg~nv~~lf~~i~~~i 408 (452)
++|||++|.||+++|+++++.+
T Consensus 153 ~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 153 MECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EEeccccCcCHHHHHHHHHHHh
Confidence 9999999999999999998764
No 100
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.92 E-value=5.3e-24 Score=197.98 Aligned_cols=167 Identities=23% Similarity=0.416 Sum_probs=135.4
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII 321 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl 321 (452)
||+++|.+|||||||+++|+...+...+.+++. +.....+.+ .+..+.+.||||+|++.|..++..++..+|++|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~---~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vil 76 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEV---GGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFAL 76 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEE---CCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEE
Confidence 689999999999999999999888777777765 444555555 7777899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--CcccHHHHHHHHH-HcCCCEEEEecCCCCccHH
Q psy14768 322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--RQVEINEIEAVCH-QYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--~~~~~e~~~~~~~-~~~~~~~~evSAktg~nv~ 398 (452)
|||++++.+|+.+..|+..+.... ...++|++||+||+|+.. +.+..++..+... ..+. .|+++||++|.||+
T Consensus 77 v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~ 152 (198)
T cd04147 77 VYAVDDPESFEEVERLREEILEVK---EDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNC-GFVETSAKDNENVL 152 (198)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCC-cEEEecCCCCCCHH
Confidence 999999999999999988777652 235799999999999965 4444444444443 3343 48999999999999
Q ss_pred HHHHHHHHHHHHhhhhhH
Q psy14768 399 DSMNFLVDRIICSKRMEE 416 (452)
Q Consensus 399 ~lf~~i~~~i~~~~~~~~ 416 (452)
++|+++++.+........
T Consensus 153 ~l~~~l~~~~~~~~~~~~ 170 (198)
T cd04147 153 EVFKELLRQANLPYNLSP 170 (198)
T ss_pred HHHHHHHHHhhcccccch
Confidence 999999998765444444
No 101
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.92 E-value=7.5e-24 Score=189.32 Aligned_cols=161 Identities=28% Similarity=0.543 Sum_probs=139.8
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|.+|+|||||+++++...+...+.++++..+ ...... ++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 76 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL---DGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFL 76 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEE---CCEEEEEEEEECCChhhhhHHHHHHhhcCCEEE
Confidence 4899999999999999999999888888777776544 444555 778899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~ 399 (452)
+|||++++.+|+.+..|+..+.... ...++|+++|+||+|+.+ .....++...+...++.. ++++||++|.|+++
T Consensus 77 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~ 152 (164)
T cd04139 77 LVFSITDMESFTATAEFREQILRVK---DDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVP-YVETSAKTRQNVEK 152 (164)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEEeeCCCCCCHHH
Confidence 9999999999999999888887752 235799999999999976 556777788888888865 99999999999999
Q ss_pred HHHHHHHHHH
Q psy14768 400 SMNFLVDRII 409 (452)
Q Consensus 400 lf~~i~~~i~ 409 (452)
+|+++++.+.
T Consensus 153 l~~~l~~~~~ 162 (164)
T cd04139 153 AFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHH
Confidence 9999988775
No 102
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.92 E-value=7.3e-24 Score=187.22 Aligned_cols=157 Identities=39% Similarity=0.718 Sum_probs=141.6
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|.+++|||||++++.+..+...+.++++.++....+.. ++..+.+.+||++|++.+..++..+++++|++|
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii 77 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEI---DGKTVKLQIWDTAGQERFRSITPSYYRGAHGAI 77 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEE---CCEEEEEEEEecCChHHHHHHHHHHhcCCCEEE
Confidence 47999999999999999999999888888899998888888877 777899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC-CCcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~-~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~ 399 (452)
+|||++++.+++.+..|+..+... ....+|+++|+||+|+. ......++..++....+.. ++++||+++.++++
T Consensus 78 ~v~d~~~~~~~~~~~~~~~~~~~~----~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~ 152 (159)
T cd00154 78 LVYDITNRESFENLDKWLKELKEY----APENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLL-FFETSAKTGENVEE 152 (159)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCe-EEEEecCCCCCHHH
Confidence 999999999999999999988877 34679999999999997 3667788888999887665 99999999999999
Q ss_pred HHHHHH
Q psy14768 400 SMNFLV 405 (452)
Q Consensus 400 lf~~i~ 405 (452)
+|+++.
T Consensus 153 ~~~~i~ 158 (159)
T cd00154 153 LFQSLA 158 (159)
T ss_pred HHHHHh
Confidence 999986
No 103
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.91 E-value=4e-24 Score=193.65 Aligned_cols=156 Identities=23% Similarity=0.318 Sum_probs=123.7
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..+||+++|.+|+|||||++++..+.+. .+.+|++.++.. +. ...+.+++|||+|+++|..++..+++++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~--~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ 79 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET--VT-----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQG 79 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEE--EE-----ECCEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence 3589999999999999999999877664 467888876642 22 245889999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHc---C-CCEEEEecCCCC
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQY---N-FMSWIEVSSKEH 394 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~---~-~~~~~evSAktg 394 (452)
+|+|||+++..+|+.+..|+..+.... ...++|++||+||+|+.+ .+..+++.+++... . ...++++||++|
T Consensus 80 ii~v~D~t~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g 155 (168)
T cd04149 80 LIFVVDSADRDRIDEARQELHRIINDR---EMRDALLLVFANKQDLPD-AMKPHEIQEKLGLTRIRDRNWYVQPSCATSG 155 (168)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHhcCH---hhcCCcEEEEEECcCCcc-CCCHHHHHHHcCCCccCCCcEEEEEeeCCCC
Confidence 999999999999999887776664321 235689999999999874 34556666654311 1 124799999999
Q ss_pred ccHHHHHHHHHH
Q psy14768 395 LMIEDSMNFLVD 406 (452)
Q Consensus 395 ~nv~~lf~~i~~ 406 (452)
.||+++|++|.+
T Consensus 156 ~gv~~~~~~l~~ 167 (168)
T cd04149 156 DGLYEGLTWLSS 167 (168)
T ss_pred CChHHHHHHHhc
Confidence 999999999864
No 104
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.91 E-value=8.6e-24 Score=194.72 Aligned_cols=166 Identities=25% Similarity=0.426 Sum_probs=139.5
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
.|++++|++|+|||||++++..+.+...+.++++..+. ..+.. ++..+.+.+|||+|++.|..++..+++++|+++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~---~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~l 77 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRV---DGKPVQLALWDTAGQEEYERLRPLSYSKAHVIL 77 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEE---CCEEEEEEEEECCCChhccccchhhcCCCCEEE
Confidence 58999999999999999999987777777777665554 34455 677788999999999988877777889999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-----------CcccHHHHHHHHHHcCCCEEEE
Q psy14768 321 IMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-----------RQVEINEIEAVCHQYNFMSWIE 388 (452)
Q Consensus 321 lV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-----------~~~~~e~~~~~~~~~~~~~~~e 388 (452)
+|||+++..+|+.+. .|+..+... ..++|++||+||+|+.+ +.+..++...+++.++...|++
T Consensus 78 lv~~i~~~~s~~~~~~~~~~~i~~~-----~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 152 (187)
T cd04129 78 IGFAVDTPDSLENVRTKWIEEVRRY-----CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYME 152 (187)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEE
Confidence 999999999999996 588888765 24699999999999843 3455678888999999877999
Q ss_pred ecCCCCccHHHHHHHHHHHHHHhhhhh
Q psy14768 389 VSSKEHLMIEDSMNFLVDRIICSKRME 415 (452)
Q Consensus 389 vSAktg~nv~~lf~~i~~~i~~~~~~~ 415 (452)
|||++|.||+++|+++.+.++..++.+
T Consensus 153 ~Sa~~~~~v~~~f~~l~~~~~~~~~~~ 179 (187)
T cd04129 153 CSALTGEGVDDVFEAATRAALLVRKSE 179 (187)
T ss_pred ccCCCCCCHHHHHHHHHHHHhcccCcc
Confidence 999999999999999998887665543
No 105
>PTZ00099 rab6; Provisional
Probab=99.91 E-value=3.3e-23 Score=189.10 Aligned_cols=173 Identities=29% Similarity=0.486 Sum_probs=139.9
Q ss_pred cccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHH
Q psy14768 263 NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLD 342 (452)
Q Consensus 263 ~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~ 342 (452)
+.|...+.+|++.++....+.+ ++..+.+.||||+|+++|..++..+++.||++|+|||++++.||+++..|+..+.
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~---~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~ 79 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYL---DEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDIL 79 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEE---CCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 4567788899999998888877 8889999999999999999999999999999999999999999999999999887
Q ss_pred hhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHhhhhhHHHHhh
Q psy14768 343 SKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421 (452)
Q Consensus 343 ~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~~~~~~~~~ 421 (452)
.. ....+|++||+||+||.+ +.+..+++..++..++.. |++|||++|.||+++|++|++.+.+....
T Consensus 80 ~~----~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~-~~e~SAk~g~nV~~lf~~l~~~l~~~~~~------- 147 (176)
T PTZ00099 80 NE----RGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTM-FHETSAKAGHNIKVLFKKIAAKLPNLDNS------- 147 (176)
T ss_pred Hh----cCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHHHhcccc-------
Confidence 65 335689999999999976 677888888999888876 99999999999999999999887543211
Q ss_pred ccccccccccccCCCCCCcCCCCCCCCCccC
Q psy14768 422 KSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452 (452)
Q Consensus 422 ~~s~~~~~~~~~~~~~~~~~~~~k~~~~c~~ 452 (452)
.+.. .+-.....+...+-+.|.+-+.|-|
T Consensus 148 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (176)
T PTZ00099 148 NSND--ANVVDIQLTNNSNANDKNMLSKCMC 176 (176)
T ss_pred CCCC--CCccceeccccCCccchhhHhhhcC
Confidence 0111 1111123344444447788888887
No 106
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.91 E-value=1.2e-23 Score=190.40 Aligned_cols=158 Identities=16% Similarity=0.315 Sum_probs=128.2
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII 321 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl 321 (452)
||+++|.++||||||++++.+..+. .+.+|++.++.. +. ...+.+.+|||+|++++..++..+++++|++|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~~--~~-----~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 72 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVET--VE-----YKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVF 72 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEEE--EE-----ECCEEEEEEECCCChhcchHHHHHhccCCEEEE
Confidence 6899999999999999999987665 467888766642 22 246789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCC-----CEEEEecCCCCcc
Q psy14768 322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNF-----MSWIEVSSKEHLM 396 (452)
Q Consensus 322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~-----~~~~evSAktg~n 396 (452)
|||++++.+|.++..|+..+.+.. ...+.|++||+||+|+.+ .+..+++++++...+. ..|++|||++|.|
T Consensus 73 V~D~s~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 148 (169)
T cd04158 73 VVDSSHRDRVSEAHSELAKLLTEK---ELRDALLLIFANKQDVAG-ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMG 148 (169)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCh---hhCCCCEEEEEeCcCccc-CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCC
Confidence 999999999999988888776541 234589999999999964 4566677776643221 2478999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy14768 397 IEDSMNFLVDRIICS 411 (452)
Q Consensus 397 v~~lf~~i~~~i~~~ 411 (452)
|+++|+++++.+...
T Consensus 149 v~~~f~~l~~~~~~~ 163 (169)
T cd04158 149 LYEGLDWLSRQLVAA 163 (169)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999877654
No 107
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.91 E-value=1.5e-23 Score=192.24 Aligned_cols=157 Identities=20% Similarity=0.335 Sum_probs=123.9
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..+||+++|.++||||||++++..+.+. .+.+|++.++.. + +...+.+.+|||+|++++..++..+++++|+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~--~-----~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~ 87 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--V-----EYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEE--E-----EECCEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence 3589999999999999999999877665 467888876532 2 2346889999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCC-------EEEEecC
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFM-------SWIEVSS 391 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~-------~~~evSA 391 (452)
+|+|||+++..+++.+..++..+.... ...++|++||+||.|+.+. ...++ +...++.. .++++||
T Consensus 88 iI~V~D~s~~~s~~~~~~~l~~~l~~~---~~~~~piilv~NK~Dl~~~-~~~~~---~~~~l~l~~~~~~~~~~~~~Sa 160 (181)
T PLN00223 88 LIFVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNA-MNAAE---ITDKLGLHSLRQRHWYIQSTCA 160 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHhcCH---hhCCCCEEEEEECCCCCCC-CCHHH---HHHHhCccccCCCceEEEeccC
Confidence 999999999999998877666554321 2256999999999999752 23333 33333332 2568999
Q ss_pred CCCccHHHHHHHHHHHHHH
Q psy14768 392 KEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 392 ktg~nv~~lf~~i~~~i~~ 410 (452)
++|+||.++|++|++.+.+
T Consensus 161 ~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 161 TSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999988764
No 108
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.91 E-value=7.5e-24 Score=189.99 Aligned_cols=155 Identities=18% Similarity=0.290 Sum_probs=118.5
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|.++||||||++++..+.+. .+.+|++.++. .+.. ..+.+.+|||+|+++|..++..+++++|++|
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~-----~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i 72 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 72 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE-----CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 48999999999999999999877776 46788887653 2322 4688999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHH-Hc--CCCEEEEecCCCCccH
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH-QY--NFMSWIEVSSKEHLMI 397 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~-~~--~~~~~~evSAktg~nv 397 (452)
+|||+++..+|+.+..|+..+.... ...++|++||+||.|+.+.....+....+.. .. ....++++||++|.||
T Consensus 73 ~v~D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv 149 (159)
T cd04150 73 FVVDSNDRERIGEAREELQRMLNED---ELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGL 149 (159)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhcH---HhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCH
Confidence 9999999999999988776664321 2346899999999999652211222222211 00 1123679999999999
Q ss_pred HHHHHHHHH
Q psy14768 398 EDSMNFLVD 406 (452)
Q Consensus 398 ~~lf~~i~~ 406 (452)
+++|++|.+
T Consensus 150 ~~~~~~l~~ 158 (159)
T cd04150 150 YEGLDWLSN 158 (159)
T ss_pred HHHHHHHhc
Confidence 999999864
No 109
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.90 E-value=3.2e-23 Score=184.26 Aligned_cols=158 Identities=29% Similarity=0.574 Sum_probs=137.4
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII 321 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl 321 (452)
||+++|++|+|||||++++++..+...+.++++ +.....+.. ++..+.+++||++|++.+..++..+++.+|++++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 76 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVV---DGETYTLDILDTAGQEEFSAMRDLYIRQGDGFIL 76 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEE---CCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEE
Confidence 689999999999999999998878888877777 444555555 6677899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHHH
Q psy14768 322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS 400 (452)
Q Consensus 322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~l 400 (452)
|||++++.+++++..|...+.... ....+|+++|+||+|+.+ .....+++..+....+.. |+++||+++.|++++
T Consensus 77 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i~~l 152 (160)
T cd00876 77 VYSITDRESFEEIKGYREQILRVK---DDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCP-FIETSAKDNINIDEV 152 (160)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCc-EEEeccCCCCCHHHH
Confidence 999999999999999888887762 225799999999999987 667788888898888855 999999999999999
Q ss_pred HHHHHHH
Q psy14768 401 MNFLVDR 407 (452)
Q Consensus 401 f~~i~~~ 407 (452)
|+++++.
T Consensus 153 ~~~l~~~ 159 (160)
T cd00876 153 FKLLVRE 159 (160)
T ss_pred HHHHHhh
Confidence 9999875
No 110
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.90 E-value=8.4e-24 Score=192.76 Aligned_cols=159 Identities=21% Similarity=0.313 Sum_probs=122.6
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..+||+++|.+++|||||++++..+.+. .+.+|++.++.. +.. ..+.+++|||+|++.+..++..+++++|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~-----~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ 83 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY-----KNISFTVWDVGGQDKIRPLWRHYYTNTQG 83 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE-----CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 3589999999999999999999877664 467888876643 222 45789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHc----CCCEEEEecCCCC
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQY----NFMSWIEVSSKEH 394 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~----~~~~~~evSAktg 394 (452)
+|+|||++++.+++....|+..+.... ...++|++||+||.|+.+. ...+++.+..... ....++++||++|
T Consensus 84 ii~v~D~t~~~s~~~~~~~l~~~~~~~---~~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 159 (175)
T smart00177 84 LIFVVDSNDRDRIDEAREELHRMLNED---ELRDAVILVFANKQDLPDA-MKAAEITEKLGLHSIRDRNWYIQPTCATSG 159 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHhhCH---hhcCCcEEEEEeCcCcccC-CCHHHHHHHhCccccCCCcEEEEEeeCCCC
Confidence 999999999999999888777664331 2356899999999999752 2233333222111 1112568999999
Q ss_pred ccHHHHHHHHHHHHH
Q psy14768 395 LMIEDSMNFLVDRII 409 (452)
Q Consensus 395 ~nv~~lf~~i~~~i~ 409 (452)
.||+++|++|.+.+.
T Consensus 160 ~gv~e~~~~l~~~~~ 174 (175)
T smart00177 160 DGLYEGLTWLSNNLK 174 (175)
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999987653
No 111
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.90 E-value=5.3e-23 Score=187.70 Aligned_cols=163 Identities=29% Similarity=0.483 Sum_probs=137.9
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
.||+++|.+|+|||||++++.+..+...+.++++..+ ...+.. ++..+.+.+|||+|+++|..++..++..+|+++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 77 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRY---KGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYI 77 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEE---CCEEEEEEEEECCChHhhHHHHHHHHhhCCEEE
Confidence 5899999999999999999999888877878776555 344445 667788999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~ 399 (452)
+|||+++..+|+.+..|+..+.+.. ...+.|+|||+||+|+.. +....++...+.+.++.. ++++||+++.|+.+
T Consensus 78 ~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~ 153 (180)
T cd04137 78 LVYSVTSRKSFEVVKVIYDKILDML---GKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAA-FLESSARENENVEE 153 (180)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHH
Confidence 9999999999999998877776542 335689999999999975 556666777888877754 99999999999999
Q ss_pred HHHHHHHHHHHh
Q psy14768 400 SMNFLVDRIICS 411 (452)
Q Consensus 400 lf~~i~~~i~~~ 411 (452)
+|.++.+.+...
T Consensus 154 l~~~l~~~~~~~ 165 (180)
T cd04137 154 AFELLIEEIEKV 165 (180)
T ss_pred HHHHHHHHHHHh
Confidence 999999887643
No 112
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.90 E-value=9.3e-23 Score=192.01 Aligned_cols=166 Identities=27% Similarity=0.563 Sum_probs=143.5
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...+|++++|++|+|||||+++++.+.+...+.+|++.++....+.. ++..+.+.+|||+|++.|..++..++.+++
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYT---NCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEE---CCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 44689999999999999999999888888888999999888877766 788899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
++|+|||+++..+|+.+..|+..+... ..+.|+++|+||+|+.++....+. ..+....++. |+++||++|.|+
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-----~~~~~i~lv~nK~Dl~~~~~~~~~-~~~~~~~~~~-~~e~Sa~~~~~v 156 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRV-----CENIPIVLVGNKVDVKDRQVKARQ-ITFHRKKNLQ-YYDISAKSNYNF 156 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh-----CCCCCEEEEEECccCccccCCHHH-HHHHHHcCCE-EEEEeCCCCCCH
Confidence 999999999999999999999988765 256899999999998764444333 3566666665 999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy14768 398 EDSMNFLVDRIICSKR 413 (452)
Q Consensus 398 ~~lf~~i~~~i~~~~~ 413 (452)
+++|.++++.+.....
T Consensus 157 ~~~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 157 EKPFLWLARRLTNDPN 172 (215)
T ss_pred HHHHHHHHHHHhhccc
Confidence 9999999999876544
No 113
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.90 E-value=8e-24 Score=190.84 Aligned_cols=152 Identities=23% Similarity=0.333 Sum_probs=124.2
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII 321 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl 321 (452)
.|+++|.+|||||||+++|.++.+...+.+|++.+.. .+ +...+.+.+|||+|+++|..++..+++++|++|+
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~----~i---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 73 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSV----AI---PTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIF 73 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceE----EE---eeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 3789999999999999999998888888899886542 22 4467889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccH----HHHHHHHHHcCCCEEEEecCCC---
Q psy14768 322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEI----NEIEAVCHQYNFMSWIEVSSKE--- 393 (452)
Q Consensus 322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~----e~~~~~~~~~~~~~~~evSAkt--- 393 (452)
|||+++..+|..++.|+..+... ..++|++||+||.|+.. +.+.. .++..++++.++. |+++||++
T Consensus 74 V~D~t~~~s~~~~~~~l~~~~~~-----~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~Sa~~~~s 147 (164)
T cd04162 74 VVDSADSERLPLARQELHQLLQH-----PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWI-LQGTSLDDDGS 147 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHhC-----CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceE-EEEeeecCCCC
Confidence 99999999999998888877643 25799999999999875 32211 1234555555654 88888888
Q ss_pred ---CccHHHHHHHHHH
Q psy14768 394 ---HLMIEDSMNFLVD 406 (452)
Q Consensus 394 ---g~nv~~lf~~i~~ 406 (452)
++||+++|+.++.
T Consensus 148 ~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 148 PSRMEAVKDLLSQLIN 163 (164)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999998763
No 114
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.90 E-value=5.5e-23 Score=185.32 Aligned_cols=157 Identities=26% Similarity=0.484 Sum_probs=132.5
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|.+|+|||||+++|++..+...+.++....+ ...... ++..+.+++|||+|++.|..++..+++.+|+++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i 76 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTV---DGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFL 76 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEE---CCEEEEEEEEeCCCcccccccchhhcCCCCEEE
Confidence 5899999999999999999999888777777766443 334455 678889999999999998888888899999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C-----------cccHHHHHHHHHHcCCCEEE
Q psy14768 321 IMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R-----------QVEINEIEAVCHQYNFMSWI 387 (452)
Q Consensus 321 lV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~-----------~~~~e~~~~~~~~~~~~~~~ 387 (452)
+|||+++..+|.... .|+..+... ..++|+++|+||+|+.+ . .+..++...+...++...|+
T Consensus 77 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 151 (171)
T cd00157 77 ICFSVDSPSSFENVKTKWIPEIRHY-----CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYM 151 (171)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEE
Confidence 999999999998875 477777665 24799999999999976 2 23567788888998886799
Q ss_pred EecCCCCccHHHHHHHHHH
Q psy14768 388 EVSSKEHLMIEDSMNFLVD 406 (452)
Q Consensus 388 evSAktg~nv~~lf~~i~~ 406 (452)
++||++|.|++++|+++++
T Consensus 152 ~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 152 ECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EeecCCCCCHHHHHHHHhh
Confidence 9999999999999999875
No 115
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.90 E-value=6.2e-23 Score=185.06 Aligned_cols=160 Identities=17% Similarity=0.286 Sum_probs=125.2
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|++|||||||++++.++.+...+. ++..++ .....+ ++..+.+.+|||+|++.+...+..++..+|+++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~-~~~~~~-~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i 75 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVP-RVLPEI-TIPADV---TPERVPTTIVDTSSRPQDRANLAAEIRKANVIC 75 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCC-Ccccce-Eeeeee---cCCeEEEEEEeCCCchhhhHHHhhhcccCCEEE
Confidence 489999999999999999999988865543 333222 233334 667789999999999988877777889999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Ccc--cHHHHHHHHHHcC-CCEEEEecCCCCc
Q psy14768 321 IMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQV--EINEIEAVCHQYN-FMSWIEVSSKEHL 395 (452)
Q Consensus 321 lV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~--~~e~~~~~~~~~~-~~~~~evSAktg~ 395 (452)
+|||++++.+|+.+. .|...+... . .+.|++||+||+|+.+ ... ..+++..+...+. ...|+++||++|.
T Consensus 76 lv~d~~~~~s~~~~~~~~~~~i~~~----~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 150 (166)
T cd01893 76 LVYSVDRPSTLERIRTKWLPLIRRL----G-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLI 150 (166)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh----C-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEecccccc
Confidence 999999999999985 588877765 2 3799999999999976 221 2334444445443 3369999999999
Q ss_pred cHHHHHHHHHHHHHH
Q psy14768 396 MIEDSMNFLVDRIIC 410 (452)
Q Consensus 396 nv~~lf~~i~~~i~~ 410 (452)
|++++|+.+.+.+.+
T Consensus 151 ~v~~lf~~~~~~~~~ 165 (166)
T cd01893 151 NVSEVFYYAQKAVLH 165 (166)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999988764
No 116
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.90 E-value=2.2e-23 Score=191.27 Aligned_cols=160 Identities=22% Similarity=0.311 Sum_probs=122.2
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.+||+++|++|||||||++++..+.+.. +.+|++.++.. + +...+.+.+|||+|++++..++..+++++|++
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~--~-----~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~i 88 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVET--V-----EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGL 88 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEE--E-----EECCEEEEEEECCCCHhHHHHHHHHhcCCCEE
Confidence 5899999999999999999998777754 66888866542 2 22457899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCC----CEEEEecCCCCc
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNF----MSWIEVSSKEHL 395 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~----~~~~evSAktg~ 395 (452)
|+|||+++..+|..+..++..+.... ...++|++||+||.|+.+ ....+++........+ ..++++||++|.
T Consensus 89 I~v~D~t~~~s~~~~~~~l~~~~~~~---~~~~~piilv~NK~Dl~~-~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~ 164 (182)
T PTZ00133 89 IFVVDSNDRERIGDAREELERMLSED---ELRDAVLLVFANKQDLPN-AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQ 164 (182)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhCH---hhcCCCEEEEEeCCCCCC-CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCC
Confidence 99999999999998877666553321 234689999999999864 2222332222111111 135689999999
Q ss_pred cHHHHHHHHHHHHHHh
Q psy14768 396 MIEDSMNFLVDRIICS 411 (452)
Q Consensus 396 nv~~lf~~i~~~i~~~ 411 (452)
|++++|+++.+.+...
T Consensus 165 gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 165 GLYEGLDWLSANIKKS 180 (182)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999877653
No 117
>KOG4252|consensus
Probab=99.89 E-value=1.8e-24 Score=189.02 Aligned_cols=173 Identities=25% Similarity=0.522 Sum_probs=160.4
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...+|++|+|..+|||||++.+++.+-|..++..++|.|+....+.+ +...+.+.+|||+||++|..+...||+.|.
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v---~~Edvr~mlWdtagqeEfDaItkAyyrgaq 94 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKV---LIEDVRSMLWDTAGQEEFDAITKAYYRGAQ 94 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHh---hHHHHHHHHHHhccchhHHHHHHHHhcccc
Confidence 34689999999999999999999999999999999999999998888 788888999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM 396 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n 396 (452)
+.+|||+-+|..||+.+..|++.+...+ ..+|.++|-||+||.+ .++..++++.+++.++.. ++.+|++...|
T Consensus 95 a~vLVFSTTDr~SFea~~~w~~kv~~e~-----~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~R-lyRtSvked~N 168 (246)
T KOG4252|consen 95 ASVLVFSTTDRYSFEATLEWYNKVQKET-----ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKR-LYRTSVKEDFN 168 (246)
T ss_pred ceEEEEecccHHHHHHHHHHHHHHHHHh-----ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhh-hhhhhhhhhhh
Confidence 9999999999999999999999998763 6799999999999998 788899999999999987 99999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHH
Q psy14768 397 IEDSMNFLVDRIICSKRMEEEAV 419 (452)
Q Consensus 397 v~~lf~~i~~~i~~~~~~~~~~~ 419 (452)
|..+|..++..+.+..++...+.
T Consensus 169 V~~vF~YLaeK~~q~~kq~~~~~ 191 (246)
T KOG4252|consen 169 VMHVFAYLAEKLTQQKKQSLNAN 191 (246)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999888755443
No 118
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.89 E-value=1e-22 Score=184.89 Aligned_cols=157 Identities=25% Similarity=0.332 Sum_probs=123.1
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|++|+|||||++++.++.+ ..+.+|++... ..+.+ + .+.+.+|||+|++.+..++..+++.+|
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~---~--~~~l~l~D~~G~~~~~~~~~~~~~~~d 83 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEY---E--GYKLNIWDVGGQKTLRPYWRNYFESTD 83 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEE---C--CEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 3468999999999999999999997644 45567776433 33334 3 578999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHc----CCCEEEEecCCC
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQY----NFMSWIEVSSKE 393 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~----~~~~~~evSAkt 393 (452)
++++|||++++.+|+....|+..+.... ...++|++||+||+|+.+ ....+++.++.... ...+|+++||++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04154 84 ALIWVVDSSDRLRLDDCKRELKELLQEE---RLAGATLLILANKQDLPG-ALSEEEIREALELDKISSHHWRIQPCSAVT 159 (173)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEECccccc-CCCHHHHHHHhCccccCCCceEEEeccCCC
Confidence 9999999999999999888777664321 235799999999999975 22445555555321 233599999999
Q ss_pred CccHHHHHHHHHH
Q psy14768 394 HLMIEDSMNFLVD 406 (452)
Q Consensus 394 g~nv~~lf~~i~~ 406 (452)
|.|++++|++++.
T Consensus 160 g~gi~~l~~~l~~ 172 (173)
T cd04154 160 GEGLLQGIDWLVD 172 (173)
T ss_pred CcCHHHHHHHHhc
Confidence 9999999999864
No 119
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.89 E-value=1.6e-22 Score=188.38 Aligned_cols=154 Identities=27% Similarity=0.398 Sum_probs=125.7
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeee--cCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK--YGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~--~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
+||+++|.++||||||+++++++.+...+.+|++.++..+.+.+.. .+++.+.+.||||+|+++|..++..+|+++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 5899999999999999999999999989999999888766665510 02467899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhh---------------cCCCCCcEEEEEECCCCCC-CcccHH----HHHHHH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCIL---------------DNGAMLPCLLLASKCDLPD-RQVEIN----EIEAVC 378 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~---------------~~~~~~piilV~NK~Dl~~-~~~~~e----~~~~~~ 378 (452)
+|+|||+++..||+++..|+.++.+.... ....++|++|||||.|+.+ +.+..+ ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 99999999999999999999999764210 0134699999999999976 444443 244577
Q ss_pred HHcCCCEEEEecCCCCc
Q psy14768 379 HQYNFMSWIEVSSKEHL 395 (452)
Q Consensus 379 ~~~~~~~~~evSAktg~ 395 (452)
++++.. .++.+++++.
T Consensus 161 ~~~~~~-~i~~~c~~~~ 176 (202)
T cd04102 161 EQGNAE-EINLNCTNGR 176 (202)
T ss_pred HhcCCc-eEEEecCCcc
Confidence 888887 8888888643
No 120
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.88 E-value=3.1e-22 Score=178.75 Aligned_cols=156 Identities=21% Similarity=0.294 Sum_probs=118.4
Q ss_pred cEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+|+++|++|||||||++++.+.. +...+.+|++..... + ....+.+.+|||+|+++|..++..+++.+|++|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 73 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--F-----EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGII 73 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--E-----EECCEEEEEEECCCCHhhHHHHHHHHccCCEEE
Confidence 58899999999999999999865 455677888754432 2 234678999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHH---cC-CCEEEEecCCCCcc
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQ---YN-FMSWIEVSSKEHLM 396 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~---~~-~~~~~evSAktg~n 396 (452)
+|||++++.+|..+..|+..+.+.... ...++|++||+||+|+.+. ...++....... .. ...++++||++|.|
T Consensus 74 ~v~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~iiv~NK~Dl~~~-~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~g 151 (162)
T cd04157 74 FVIDSSDRLRLVVVKDELELLLNHPDI-KHRRVPILFFANKMDLPDA-LTAVKITQLLGLENIKDKPWHIFASNALTGEG 151 (162)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCccc-ccCCCCEEEEEeCccccCC-CCHHHHHHHhCCccccCceEEEEEeeCCCCCc
Confidence 999999999998888887776543100 1257999999999999752 122332222211 11 12378999999999
Q ss_pred HHHHHHHHHH
Q psy14768 397 IEDSMNFLVD 406 (452)
Q Consensus 397 v~~lf~~i~~ 406 (452)
++++|++|.+
T Consensus 152 v~~~~~~l~~ 161 (162)
T cd04157 152 LDEGVQWLQA 161 (162)
T ss_pred hHHHHHHHhc
Confidence 9999999864
No 121
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.88 E-value=4e-22 Score=178.02 Aligned_cols=154 Identities=20% Similarity=0.342 Sum_probs=118.0
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII 321 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl 321 (452)
+|+++|.+|+|||||++++.+..+.. ..+|++.++.. +.. ...+.+.+|||+|++.+..++..+++.+|++|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~--~~~----~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~ 73 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEM--LQL----EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVY 73 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEE--EEe----CCceEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 58999999999999999999887764 46777755433 222 245789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHH--Hc---CCCEEEEecCCCCcc
Q psy14768 322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH--QY---NFMSWIEVSSKEHLM 396 (452)
Q Consensus 322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~--~~---~~~~~~evSAktg~n 396 (452)
|||++++.++..+..|+..+.+.. ...+.|++||+||+|+.+ ....+++..... .+ ...++++|||++|.|
T Consensus 74 v~D~~~~~~~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~g 149 (160)
T cd04156 74 VVDSSDEARLDESQKELKHILKNE---HIKGVPVVLLANKQDLPG-ALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEG 149 (160)
T ss_pred EEECCcHHHHHHHHHHHHHHHhch---hhcCCCEEEEEECccccc-CcCHHHHHHHcCCcccCCCCcEEEEecccccCCC
Confidence 999999999999888777765431 225699999999999864 122333332221 11 112489999999999
Q ss_pred HHHHHHHHHH
Q psy14768 397 IEDSMNFLVD 406 (452)
Q Consensus 397 v~~lf~~i~~ 406 (452)
|+++|++|++
T Consensus 150 v~~~~~~i~~ 159 (160)
T cd04156 150 LAEAFRKLAS 159 (160)
T ss_pred hHHHHHHHhc
Confidence 9999999864
No 122
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.88 E-value=2e-22 Score=182.17 Aligned_cols=153 Identities=20% Similarity=0.262 Sum_probs=119.7
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII 321 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl 321 (452)
+|+++|.++||||||++++.++ +...+.+|++... ..+.. ..+.+++||++|++++..++..+++++|++|+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~-----~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~ 72 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL-----DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVF 72 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE-----CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEE
Confidence 4889999999999999999876 6677788887543 23333 45789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHH------HHHHHHHcCC-CEEEEecCCCC
Q psy14768 322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINE------IEAVCHQYNF-MSWIEVSSKEH 394 (452)
Q Consensus 322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~------~~~~~~~~~~-~~~~evSAktg 394 (452)
|||+++..+|+.+..|+..+.... ...++|++||+||+|+.+. ...++ +..++++.+. ..+++|||++|
T Consensus 73 V~D~s~~~s~~~~~~~l~~l~~~~---~~~~~piliv~NK~Dl~~~-~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g 148 (167)
T cd04161 73 VVDSSDDDRVQEVKEILRELLQHP---RVSGKPILVLANKQDKKNA-LLGADVIEYLSLEKLVNENKSLCHIEPCSAIEG 148 (167)
T ss_pred EEECCchhHHHHHHHHHHHHHcCc---cccCCcEEEEEeCCCCcCC-CCHHHHHHhcCcccccCCCCceEEEEEeEceeC
Confidence 999999999999998888876541 2357999999999999751 11221 1223322332 23677999998
Q ss_pred ------ccHHHHHHHHHH
Q psy14768 395 ------LMIEDSMNFLVD 406 (452)
Q Consensus 395 ------~nv~~lf~~i~~ 406 (452)
.|+++.|+||..
T Consensus 149 ~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 149 LGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCccccCHHHHHHHHhc
Confidence 899999999975
No 123
>PLN00023 GTP-binding protein; Provisional
Probab=99.88 E-value=7e-22 Score=193.25 Aligned_cols=148 Identities=21% Similarity=0.442 Sum_probs=123.7
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeec----------CCeeEEEEEEecCCcchhhhh
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY----------GGRPVKLQIWDIAGQDRYICM 308 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~----------~~~~~~l~l~DtaG~e~~~~~ 308 (452)
..+||+++|..+||||||+++|+++.+...+.+|+|.++....+.+... +++.+.++||||+|+++|..+
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL 99 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC 99 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence 4589999999999999999999999999889999999887776665100 135688999999999999999
Q ss_pred hhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhh--------cCCCCCcEEEEEECCCCCC-C---c---ccHHH
Q psy14768 309 SRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCIL--------DNGAMLPCLLLASKCDLPD-R---Q---VEINE 373 (452)
Q Consensus 309 ~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~--------~~~~~~piilV~NK~Dl~~-~---~---~~~e~ 373 (452)
+..+|+++|++|+|||+++..+|+++..|+..+...... ....++|++||+||+||.+ + . +..++
T Consensus 100 ~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~ 179 (334)
T PLN00023 100 RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDA 179 (334)
T ss_pred hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHH
Confidence 999999999999999999999999999999999875210 0013589999999999965 2 2 36889
Q ss_pred HHHHHHHcCCCEE
Q psy14768 374 IEAVCHQYNFMSW 386 (452)
Q Consensus 374 ~~~~~~~~~~~~~ 386 (452)
+++|+++.++.+.
T Consensus 180 a~~~A~~~g~l~~ 192 (334)
T PLN00023 180 ARQWVEKQGLLPS 192 (334)
T ss_pred HHHHHHHcCCCcc
Confidence 9999999887543
No 124
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.87 E-value=6.7e-22 Score=179.91 Aligned_cols=154 Identities=19% Similarity=0.338 Sum_probs=119.5
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.++|+++|.+|+|||||++++..+.+.. +.++++.++.. +.+ ..+.+.+|||+|++.+...+..+++.+|++
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~--~~~-----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 86 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE--IVY-----KNIRFLMWDIGGQESLRSSWNTYYTNTDAV 86 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE--EEE-----CCeEEEEEECCCCHHHHHHHHHHhhcCCEE
Confidence 5799999999999999999999877764 56777765532 222 357899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHH-----HHcCCCEEEEecCCCC
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVC-----HQYNFMSWIEVSSKEH 394 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~-----~~~~~~~~~evSAktg 394 (452)
|+|||++++.++.....++..+.+.. ...++|++||+||+|+.+ ....+++.+.. ...++ +++++||++|
T Consensus 87 i~V~D~s~~~~~~~~~~~l~~~~~~~---~~~~~p~viv~NK~Dl~~-~~~~~~i~~~l~~~~~~~~~~-~~~~~SA~~g 161 (174)
T cd04153 87 ILVIDSTDRERLPLTKEELYKMLAHE---DLRKAVLLVLANKQDLKG-AMTPAEISESLGLTSIRDHTW-HIQGCCALTG 161 (174)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhch---hhcCCCEEEEEECCCCCC-CCCHHHHHHHhCcccccCCce-EEEecccCCC
Confidence 99999999999988877666654431 235699999999999875 22333332222 12222 4899999999
Q ss_pred ccHHHHHHHHHH
Q psy14768 395 LMIEDSMNFLVD 406 (452)
Q Consensus 395 ~nv~~lf~~i~~ 406 (452)
.||+++|++|.+
T Consensus 162 ~gi~e~~~~l~~ 173 (174)
T cd04153 162 EGLPEGLDWIAS 173 (174)
T ss_pred CCHHHHHHHHhc
Confidence 999999999864
No 125
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.87 E-value=1.3e-21 Score=174.80 Aligned_cols=153 Identities=25% Similarity=0.342 Sum_probs=114.8
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII 321 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl 321 (452)
||+++|++++|||||++++..+.+. .+.+|++.++.. +. ...+.+++|||+|++.|..++..+++.+|++|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~--~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~ 72 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVET--VT-----YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIY 72 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEE--EE-----ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 6899999999999999999877665 456777765532 22 245789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcC----CCEEEEecCCCCccH
Q psy14768 322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYN----FMSWIEVSSKEHLMI 397 (452)
Q Consensus 322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~----~~~~~evSAktg~nv 397 (452)
|||++++.++.....++..+.+.. ...++|++||+||+|+.+.. ..+++.+...... ..+++++||++|.|+
T Consensus 73 v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~piiiv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi 148 (158)
T cd04151 73 VVDSTDRDRLGTAKEELHAMLEEE---ELKGAVLLVFANKQDMPGAL-SEAEISEKLGLSELKDRTWSIFKTSAIKGEGL 148 (158)
T ss_pred EEECCCHHHHHHHHHHHHHHHhch---hhcCCcEEEEEeCCCCCCCC-CHHHHHHHhCccccCCCcEEEEEeeccCCCCH
Confidence 999999988887766555443221 23469999999999986421 2223222211111 124899999999999
Q ss_pred HHHHHHHHH
Q psy14768 398 EDSMNFLVD 406 (452)
Q Consensus 398 ~~lf~~i~~ 406 (452)
+++|+++++
T Consensus 149 ~~l~~~l~~ 157 (158)
T cd04151 149 DEGMDWLVN 157 (158)
T ss_pred HHHHHHHhc
Confidence 999999875
No 126
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.87 E-value=1.4e-21 Score=175.81 Aligned_cols=154 Identities=25% Similarity=0.398 Sum_probs=118.5
Q ss_pred cEEEeeecccCCcceeeecccccc------ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcC
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKF------LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQN 315 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~------~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ 315 (452)
+|+++|++|+|||||++++.+... ...+.+|++.++. .+.+ ..+.+.+|||+|++.+..++..+++.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~ 73 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEV-----GNARLKFWDLGGQESLRSLWDKYYAE 73 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEE-----CCEEEEEEECCCChhhHHHHHHHhCC
Confidence 589999999999999999875322 2344556665553 3333 35789999999999999999999999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHc------CCCEEEEe
Q psy14768 316 SDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQY------NFMSWIEV 389 (452)
Q Consensus 316 ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~------~~~~~~ev 389 (452)
+|++++|||+++..++.....|+..+.+.. ...++|++||+||+|+.+ ....+++..+.... ...+++++
T Consensus 74 ~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (167)
T cd04160 74 CHAIIYVIDSTDRERFEESKSALEKVLRNE---ALEGVPLLILANKQDLPD-ALSVEEIKEVFQDKAEEIGRRDCLVLPV 149 (167)
T ss_pred CCEEEEEEECchHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEEcccccc-CCCHHHHHHHhccccccccCCceEEEEe
Confidence 999999999999988988888777765531 235699999999999865 33445555554432 12358999
Q ss_pred cCCCCccHHHHHHHHHH
Q psy14768 390 SSKEHLMIEDSMNFLVD 406 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~ 406 (452)
||++|.|++++|++|..
T Consensus 150 Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 150 SALEGTGVREGIEWLVE 166 (167)
T ss_pred eCCCCcCHHHHHHHHhc
Confidence 99999999999999864
No 127
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.86 E-value=3.8e-21 Score=171.44 Aligned_cols=153 Identities=24% Similarity=0.373 Sum_probs=120.1
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII 321 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl 321 (452)
||+++|.+|+|||||++++++.. ...+.++++..... +.+ ..+.+.+|||+|++.+..++..+++.+|++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~--~~~-----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 72 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVET--VEY-----KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIF 72 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEE--EEE-----CCEEEEEEECCCChhhHHHHHHHhccCCEEEE
Confidence 68999999999999999999876 34556677655433 323 35789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHc----CCCEEEEecCCCCccH
Q psy14768 322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQY----NFMSWIEVSSKEHLMI 397 (452)
Q Consensus 322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~----~~~~~~evSAktg~nv 397 (452)
|||++++.++.....|+..+.... ...+.|+++|+||+|+... ...++..+..... ...+++++||++|.|+
T Consensus 73 v~D~~~~~~~~~~~~~~~~~~~~~---~~~~~piiiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 148 (158)
T cd00878 73 VVDSSDRERIEEAKEELHKLLNEE---ELKGVPLLIFANKQDLPGA-LSVSELIEKLGLEKILGRRWHIQPCSAVTGDGL 148 (158)
T ss_pred EEECCCHHHHHHHHHHHHHHHhCc---ccCCCcEEEEeeccCCccc-cCHHHHHHhhChhhccCCcEEEEEeeCCCCCCH
Confidence 999999999999988777765542 2457999999999998752 2333333333321 2345899999999999
Q ss_pred HHHHHHHHH
Q psy14768 398 EDSMNFLVD 406 (452)
Q Consensus 398 ~~lf~~i~~ 406 (452)
+++|++|+.
T Consensus 149 ~~~~~~l~~ 157 (158)
T cd00878 149 DEGLDWLLQ 157 (158)
T ss_pred HHHHHHHhh
Confidence 999999875
No 128
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.86 E-value=2.5e-21 Score=178.25 Aligned_cols=157 Identities=20% Similarity=0.304 Sum_probs=124.5
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
...+|+++|++|+|||||++++.++.+. .+.+|.+... ..+.+ + .+.+.+||++|++.+..++..+++.+|+
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~---~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~ 89 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTI---G--NIKFKTFDLGGHEQARRLWKDYFPEVDG 89 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEE---C--CEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence 4689999999999999999999987663 4566666443 33334 3 4678999999999998888999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcC---------------C
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYN---------------F 383 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~---------------~ 383 (452)
+++|+|+++..+|+....|+..+.... ...+.|++||+||+|+.. .+..+++++++.... .
T Consensus 90 iilV~D~~~~~s~~~~~~~~~~i~~~~---~~~~~pvivv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (190)
T cd00879 90 IVFLVDAADPERFQESKEELDSLLSDE---ELANVPFLILGNKIDLPG-AVSEEELRQALGLYGTTTGKGVSLKVSGIRP 165 (190)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHcCc---cccCCCEEEEEeCCCCCC-CcCHHHHHHHhCcccccccccccccccCcee
Confidence 999999999999988877777765431 235699999999999864 455666766664321 1
Q ss_pred CEEEEecCCCCccHHHHHHHHHHH
Q psy14768 384 MSWIEVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 384 ~~~~evSAktg~nv~~lf~~i~~~ 407 (452)
..+++|||++|+|++++|+++++.
T Consensus 166 ~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 166 IEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEEEEeEecCCCChHHHHHHHHhh
Confidence 247999999999999999999875
No 129
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.86 E-value=5e-21 Score=174.22 Aligned_cols=158 Identities=18% Similarity=0.256 Sum_probs=115.5
Q ss_pred cEEEeeecccCCcceeeeccccc-------cccccCCc------ceeeeEEEEE--EeeecCCeeEEEEEEecCCcchhh
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNK-------FLDNYKNT------VGVDFSTKLL--SHKKYGGRPVKLQIWDIAGQDRYI 306 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~-------~~~~~~~t------~~~d~~~~~i--~~~~~~~~~~~l~l~DtaG~e~~~ 306 (452)
+|+++|.+++|||||+++|++.. +...+.++ .+.++....+ .+...++..+.+.||||||+++|.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999998632 11122222 1223332222 221114567889999999999999
Q ss_pred hhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCC--
Q psy14768 307 CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFM-- 384 (452)
Q Consensus 307 ~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~-- 384 (452)
.++..+++.+|++|+|||++++.++++...|..... .++|+++|+||+|+.+ ....+...++.+.++..
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~--------~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~ 152 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE--------NNLEIIPVINKIDLPS-ADPERVKQQIEDVLGLDPS 152 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH--------cCCCEEEEEECCCCCc-CCHHHHHHHHHHHhCCCcc
Confidence 998999999999999999999888888777754433 2489999999999864 11223345666666553
Q ss_pred EEEEecCCCCccHHHHHHHHHHHH
Q psy14768 385 SWIEVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 385 ~~~evSAktg~nv~~lf~~i~~~i 408 (452)
.++++||++|.|++++|+++.+.+
T Consensus 153 ~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 153 EAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred cEEEeeccCCCCHHHHHHHHHhhC
Confidence 389999999999999999998764
No 130
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.85 E-value=9.1e-21 Score=174.20 Aligned_cols=157 Identities=17% Similarity=0.234 Sum_probs=120.7
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||++++.++.+. .+.+|.+... ..+.+ ..+.+.+|||+|++.+..++..+++++|+
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~-----~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ 87 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAI-----GNIKFTTFDLGGHQQARRLWKDYFPEVNG 87 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEE-----CCEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 3589999999999999999999987654 3445555433 22333 34788999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHH-----------cCCCEEE
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQ-----------YNFMSWI 387 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~-----------~~~~~~~ 387 (452)
+|+|+|++++.++.....++..+.... ...++|++||+||+|+.. .+..+++.+...- .....++
T Consensus 88 ii~vvD~~~~~~~~~~~~~l~~l~~~~---~~~~~piliv~NK~Dl~~-~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~ 163 (184)
T smart00178 88 IVYLVDAYDKERFAESKRELDALLSDE---ELATVPFLILGNKIDAPY-AASEDELRYALGLTNTTGSKGKVGVRPLEVF 163 (184)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHcCh---hhcCCCEEEEEeCccccC-CCCHHHHHHHcCCCcccccccccCCceeEEE
Confidence 999999999999988877776654321 235689999999999863 3445555544321 1233479
Q ss_pred EecCCCCccHHHHHHHHHHH
Q psy14768 388 EVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 388 evSAktg~nv~~lf~~i~~~ 407 (452)
+|||++|.|++++|+++...
T Consensus 164 ~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 164 MCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EeecccCCChHHHHHHHHhh
Confidence 99999999999999999764
No 131
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.85 E-value=1.5e-20 Score=166.14 Aligned_cols=154 Identities=27% Similarity=0.437 Sum_probs=120.2
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII 321 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl 321 (452)
.|+++|++|+|||||++++.+..+...+.++++.++.. +.. . .+.+.+|||+|++.+..++..++..+|++++
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~---~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 73 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTK---G--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVY 73 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEE---C--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEE
Confidence 47899999999999999999999998888998877653 222 2 3789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHH--H--cCCCEEEEecCCCCccH
Q psy14768 322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH--Q--YNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~--~--~~~~~~~evSAktg~nv 397 (452)
|+|+++..++.....|+..+.... ...++|+++|+||+|+.+.. ..++...... . ....+++++||++|.|+
T Consensus 74 v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 149 (159)
T cd04159 74 VVDAADRTALEAAKNELHDLLEKP---SLEGIPLLVLGNKNDLPGAL-SVDELIEQMNLKSITDREVSCYSISCKEKTNI 149 (159)
T ss_pred EEECCCHHHHHHHHHHHHHHHcCh---hhcCCCEEEEEeCccccCCc-CHHHHHHHhCcccccCCceEEEEEEeccCCCh
Confidence 999999988888877766665431 23568999999999987521 1222211111 1 11134799999999999
Q ss_pred HHHHHHHHH
Q psy14768 398 EDSMNFLVD 406 (452)
Q Consensus 398 ~~lf~~i~~ 406 (452)
.++|+++.+
T Consensus 150 ~~l~~~l~~ 158 (159)
T cd04159 150 DIVLDWLIK 158 (159)
T ss_pred HHHHHHHhh
Confidence 999999875
No 132
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.85 E-value=3.4e-21 Score=168.89 Aligned_cols=135 Identities=21% Similarity=0.259 Sum_probs=103.3
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc-----chhhhhhhhhhcCC
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ-----DRYICMSRVYYQNS 316 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~-----e~~~~~~~~~i~~a 316 (452)
||+++|++|||||||+|+|.++.+ .+.+|.+.+ + .. .+|||+|+ +.|..+.. .++++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~-------~---~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~a 63 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVE-------Y---ND-----GAIDTPGEYVENRRLYSALIV-TAADA 63 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEE-------E---cC-----eeecCchhhhhhHHHHHHHHH-HhhcC
Confidence 799999999999999999998764 233343322 2 11 58999997 23444433 58999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768 317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLM 396 (452)
Q Consensus 317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~n 396 (452)
|++|+|||++++.++... .|... . ..|+++|+||+|+.++....++++++++..+..+++++||++|.|
T Consensus 64 d~vilv~d~~~~~s~~~~-~~~~~---~-------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 132 (142)
T TIGR02528 64 DVIALVQSATDPESRFPP-GFASI---F-------VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQG 132 (142)
T ss_pred CEEEEEecCCCCCcCCCh-hHHHh---c-------cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCC
Confidence 999999999999988663 34321 1 149999999999976455667778888888775699999999999
Q ss_pred HHHHHHHHH
Q psy14768 397 IEDSMNFLV 405 (452)
Q Consensus 397 v~~lf~~i~ 405 (452)
++++|++++
T Consensus 133 i~~l~~~l~ 141 (142)
T TIGR02528 133 LEALVDYLN 141 (142)
T ss_pred HHHHHHHHh
Confidence 999999874
No 133
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.84 E-value=2.5e-20 Score=166.49 Aligned_cols=154 Identities=17% Similarity=0.169 Sum_probs=106.5
Q ss_pred cEEEeeecccCCcceeeecccc---ccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 242 PILITGDSTVGKTSYVQGFVQN---KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~---~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
.|+++|++|||||||+++|.+. .+...+.++++.+.....+.+ .. ...+.+|||||+++|......++..+|+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~---~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ 77 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDL---PS-GKRLGFIDVPGHEKFIKNMLAGAGGIDL 77 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEe---cC-CcEEEEEECCChHHHHHHHHhhhhcCCE
Confidence 5899999999999999999863 333344455666555544444 32 4578999999999988777778899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCC---cccHHHHHHHHHHc--CCCEEEEecCCC
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDR---QVEINEIEAVCHQY--NFMSWIEVSSKE 393 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~---~~~~e~~~~~~~~~--~~~~~~evSAkt 393 (452)
+|+|||+++....+... ++..+... ..+|+++|+||+|+.+. ....++..++.... ...+++++||++
T Consensus 78 ii~V~d~~~~~~~~~~~-~~~~~~~~------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (164)
T cd04171 78 VLLVVAADEGIMPQTRE-HLEILELL------GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVT 150 (164)
T ss_pred EEEEEECCCCccHhHHH-HHHHHHHh------CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCC
Confidence 99999998732222211 11122221 12599999999999752 12233444444442 223599999999
Q ss_pred CccHHHHHHHHHH
Q psy14768 394 HLMIEDSMNFLVD 406 (452)
Q Consensus 394 g~nv~~lf~~i~~ 406 (452)
+.|++++|+.+..
T Consensus 151 ~~~v~~l~~~l~~ 163 (164)
T cd04171 151 GEGIEELKEYLDE 163 (164)
T ss_pred CcCHHHHHHHHhh
Confidence 9999999998754
No 134
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.84 E-value=1.8e-20 Score=168.91 Aligned_cols=160 Identities=11% Similarity=0.079 Sum_probs=113.6
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc----hhhhhhhhh---hc
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD----RYICMSRVY---YQ 314 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e----~~~~~~~~~---i~ 314 (452)
.|+++|++|+|||||+|++.+........+.++.+.....+.. ++ ...+.+|||||+. .+..+...+ ++
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~---~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRV---DD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIE 77 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEc---CC-CCeEEEEecCcccCcccccCCchHHHHHHHH
Confidence 5899999999999999999976544333333333332222322 22 2478999999974 222233333 45
Q ss_pred CCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCC
Q psy14768 315 NSDGCIIMFDLTNR-KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKE 393 (452)
Q Consensus 315 ~ad~vIlV~D~t~~-~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAkt 393 (452)
.+|++|+|+|++++ .+++.+..|...+.... .....+|+++|+||+|+.+.....+....+.......+++++||++
T Consensus 78 ~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~--~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 155 (170)
T cd01898 78 RTRLLLHVIDLSGDDDPVEDYKTIRNELELYN--PELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALT 155 (170)
T ss_pred hCCEEEEEEecCCCCCHHHHHHHHHHHHHHhC--ccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCC
Confidence 69999999999999 79999999988887652 1124689999999999976333345555666654233489999999
Q ss_pred CccHHHHHHHHHHH
Q psy14768 394 HLMIEDSMNFLVDR 407 (452)
Q Consensus 394 g~nv~~lf~~i~~~ 407 (452)
+.|++++|+++.+.
T Consensus 156 ~~gi~~l~~~i~~~ 169 (170)
T cd01898 156 GEGLDELLRKLAEL 169 (170)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999865
No 135
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=5.6e-20 Score=183.61 Aligned_cols=166 Identities=12% Similarity=0.043 Sum_probs=123.0
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch----hhhhh---hhh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR----YICMS---RVY 312 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~----~~~~~---~~~ 312 (452)
-..|+++|.||||||||+|++.+.+......+.++.+...-.+.+ . ....+.+|||||+.+ ...+. ...
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~---~-~~~~~~i~D~PGli~ga~~~~gLg~~flrh 233 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRV---D-DYKSFVIADIPGLIEGASEGAGLGHRFLKH 233 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEe---C-CCcEEEEEeCCCccCCCCccccHHHHHHHH
Confidence 368999999999999999999985544444455565555444443 2 334688999999732 11232 335
Q ss_pred hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecC
Q psy14768 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSS 391 (452)
Q Consensus 313 i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSA 391 (452)
+++++++|+|||+++..++++++.|..++..+. ....++|++||+||+|+.+ .....+..+.+....+.. ++++||
T Consensus 234 ie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~--~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~-i~~iSA 310 (335)
T PRK12299 234 IERTRLLLHLVDIEAVDPVEDYKTIRNELEKYS--PELADKPRILVLNKIDLLDEEEEREKRAALELAALGGP-VFLISA 310 (335)
T ss_pred hhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhh--hhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCC-EEEEEc
Confidence 678999999999998889999999999998762 1124689999999999976 333334455555556555 899999
Q ss_pred CCCccHHHHHHHHHHHHHHhh
Q psy14768 392 KEHLMIEDSMNFLVDRIICSK 412 (452)
Q Consensus 392 ktg~nv~~lf~~i~~~i~~~~ 412 (452)
+++.||+++|+++.+.+.+.+
T Consensus 311 ktg~GI~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 311 VTGEGLDELLRALWELLEEAR 331 (335)
T ss_pred CCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999998876543
No 136
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.83 E-value=4.5e-20 Score=166.06 Aligned_cols=154 Identities=15% Similarity=0.148 Sum_probs=106.4
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh----------hhhhhh
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY----------ICMSRV 311 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~----------~~~~~~ 311 (452)
+|+++|.+|+|||||+|++.+..+.....+.++.+.....+ ....+.+.||||+|+... ..+ ..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 75 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF-----DYKYLRWQVIDTPGLLDRPLEERNTIEMQAI-TA 75 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE-----ccCceEEEEEECCCcCCccccCCchHHHHHH-HH
Confidence 68999999999999999999876644333333333322222 224578999999998421 111 11
Q ss_pred hhcCCCEEEEEEeCCChhhH--HHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEe
Q psy14768 312 YYQNSDGCIIMFDLTNRKSF--ESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEV 389 (452)
Q Consensus 312 ~i~~ad~vIlV~D~t~~~S~--~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~ev 389 (452)
....+|++|+|||+++..++ +....|+..+... ..+.|+++|+||+|+.+... ..+..++...... +++++
T Consensus 76 ~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~-----~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~-~~~~~ 148 (168)
T cd01897 76 LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL-----FKNKPVIVVLNKIDLLTFED-LSEIEEEEELEGE-EVLKI 148 (168)
T ss_pred HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhh-----cCcCCeEEEEEccccCchhh-HHHHHHhhhhccC-ceEEE
Confidence 12236899999999987654 5566677777654 24699999999999975211 1124444444444 48999
Q ss_pred cCCCCccHHHHHHHHHHHH
Q psy14768 390 SSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~~i 408 (452)
||++|.|++++|+++.+.+
T Consensus 149 Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 149 STLTEEGVDEVKNKACELL 167 (168)
T ss_pred EecccCCHHHHHHHHHHHh
Confidence 9999999999999998875
No 137
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.83 E-value=1.3e-19 Score=159.25 Aligned_cols=158 Identities=23% Similarity=0.442 Sum_probs=130.0
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.+||+++|.+|+|||||++++....+...+.++++.++....+.. ++..+.+.+||++|+..+..++..++++++++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 77 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEE---DGKTYKFNLLDTAGQEDYRAIRRLYYRAVESS 77 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEE---CCEEEEEEEEECCCcccchHHHHHHHhhhhEE
Confidence 378999999999999999999998788888889998887776666 66668899999999999999988889999999
Q ss_pred EEEEeCCCh-hhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 320 IIMFDLTNR-KSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 320 IlV~D~t~~-~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+.++|.... .++.+.. .|...+.... ..+.|+++|+||+|+.... ..+.........+..+++++||+++.|+
T Consensus 78 i~~~d~~~~v~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv 152 (161)
T TIGR00231 78 LRVFDIVILVLDVEEILEKQTKEIIHHA----ESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNI 152 (161)
T ss_pred EEEEEEeeeehhhhhHhHHHHHHHHHhc----ccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCH
Confidence 999999888 7777665 6777666652 2278999999999997532 3344455555566666999999999999
Q ss_pred HHHHHHHH
Q psy14768 398 EDSMNFLV 405 (452)
Q Consensus 398 ~~lf~~i~ 405 (452)
.++|+++-
T Consensus 153 ~~~~~~l~ 160 (161)
T TIGR00231 153 DSAFKIVE 160 (161)
T ss_pred HHHHHHhh
Confidence 99999863
No 138
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.82 E-value=1.2e-19 Score=164.12 Aligned_cols=153 Identities=25% Similarity=0.347 Sum_probs=116.6
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|++|+|||||++++.+..+. .+.++.+.++. .+.. + ...+.+||++|++.+...+..+++.+|+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~---~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 84 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQS---D--GFKLNVWDIGGQRAIRPYWRNYFENTDC 84 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE---C--CEEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence 3689999999999999999999986543 34566664443 3333 3 4678999999999998888889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCC-------EEEEecC
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFM-------SWIEVSS 391 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~-------~~~evSA 391 (452)
+++|||+++..++.....|+..+.... ...++|+++++||+|+.+. .. .+++.+.++.. .++++||
T Consensus 85 ii~v~D~~~~~~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~-~~---~~~i~~~l~~~~~~~~~~~~~~~Sa 157 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLEEE---KLAGVPVLVFANKQDLATA-AP---AEEIAEALNLHDLRDRTWHIQACSA 157 (173)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEECCCCccC-CC---HHHHHHHcCCcccCCCeEEEEEeEC
Confidence 999999999988988877666554331 2346999999999998641 11 22333444332 3689999
Q ss_pred CCCccHHHHHHHHHH
Q psy14768 392 KEHLMIEDSMNFLVD 406 (452)
Q Consensus 392 ktg~nv~~lf~~i~~ 406 (452)
++|.|++++|++|++
T Consensus 158 ~~~~gi~~~~~~l~~ 172 (173)
T cd04155 158 KTGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCCHHHHHHHHhc
Confidence 999999999999975
No 139
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.82 E-value=2.9e-19 Score=168.16 Aligned_cols=167 Identities=28% Similarity=0.435 Sum_probs=137.5
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|.+|+|||||+++|.++.+...+.++++..+....... ....+.+.+|||+||++|+.++..++..+++++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l 82 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEP---YRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL 82 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEe---CCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence 89999999999999999999999999999999998888777766 555889999999999999999999999999999
Q ss_pred EEEeCCC-hhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCC-------------cccHHHHHHHHHHc---CC
Q psy14768 321 IMFDLTN-RKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDR-------------QVEINEIEAVCHQY---NF 383 (452)
Q Consensus 321 lV~D~t~-~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~-------------~~~~e~~~~~~~~~---~~ 383 (452)
+|||.++ ..+++....|...+... .....|+++|+||+|+... ....+......... ..
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~l~~~----~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (219)
T COG1100 83 IVYDSTLRESSDELTEEWLEELREL----APDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANP 158 (219)
T ss_pred EEEecccchhhhHHHHHHHHHHHHh----CCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhccc
Confidence 9999999 55666668899998876 3357999999999999762 12222222222222 33
Q ss_pred CEEEEecCC--CCccHHHHHHHHHHHHHHhhhhh
Q psy14768 384 MSWIEVSSK--EHLMIEDSMNFLVDRIICSKRME 415 (452)
Q Consensus 384 ~~~~evSAk--tg~nv~~lf~~i~~~i~~~~~~~ 415 (452)
. ++++||+ ++.+|.++|..++..+.+.....
T Consensus 159 ~-~~~~s~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (219)
T COG1100 159 A-LLETSAKSLTGPNVNELFKELLRKLLEEIEKL 191 (219)
T ss_pred c-eeEeecccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence 3 8999999 99999999999999998665443
No 140
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.81 E-value=1.6e-19 Score=168.30 Aligned_cols=155 Identities=14% Similarity=0.137 Sum_probs=112.5
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch---------hhhhh
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR---------YICMS 309 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~---------~~~~~ 309 (452)
..++|+++|++|||||||+|++++..+.....+..+.+.....+.+ .+. ..+.+|||+|+.. |...
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~---~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~- 114 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRL---PDG-REVLLTDTVGFIRDLPHQLVEAFRST- 114 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEe---cCC-ceEEEeCCCccccCCCHHHHHHHHHH-
Confidence 3479999999999999999999987654443344444444444443 332 3788999999732 2221
Q ss_pred hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEe
Q psy14768 310 RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEV 389 (452)
Q Consensus 310 ~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~ev 389 (452)
...+..+|++++|+|++++.++.+...|...+... ...++|+++|+||+|+.+... ...+..... .+++++
T Consensus 115 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~----~~~~~~viiV~NK~Dl~~~~~----~~~~~~~~~-~~~~~~ 185 (204)
T cd01878 115 LEEVAEADLLLHVVDASDPDYEEQIETVEKVLKEL----GAEDIPMILVLNKIDLLDDEE----LEERLEAGR-PDAVFI 185 (204)
T ss_pred HHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc----CcCCCCEEEEEEccccCChHH----HHHHhhcCC-CceEEE
Confidence 12367899999999999999998888787777665 335689999999999975211 113333333 348999
Q ss_pred cCCCCccHHHHHHHHHHH
Q psy14768 390 SSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~~ 407 (452)
||+++.|++++|+++.+.
T Consensus 186 Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 186 SAKTGEGLDELLEAIEEL 203 (204)
T ss_pred EcCCCCCHHHHHHHHHhh
Confidence 999999999999999875
No 141
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.81 E-value=3.8e-19 Score=162.22 Aligned_cols=159 Identities=25% Similarity=0.401 Sum_probs=124.2
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|..++|||||++++..+.+. ...||.|.+... +.+ ..+.+.+||.+|++.++.+|..++.++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~--i~~-----~~~~~~~~d~gG~~~~~~~w~~y~~~~~ 83 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEE--IKY-----KGYSLTIWDLGGQESFRPLWKSYFQNAD 83 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEE--EEE-----TTEEEEEEEESSSGGGGGGGGGGHTTES
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccce--eee-----CcEEEEEEeccccccccccceeeccccc
Confidence 45689999999999999999999876544 467888866543 333 4577899999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHH--cC---CCEEEEecCC
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQ--YN---FMSWIEVSSK 392 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~--~~---~~~~~evSAk 392 (452)
++|+|+|.++...++.....+..+.... ...++|++|++||.|+.+ ....+++.....- +. ...++.|||.
T Consensus 84 ~iIfVvDssd~~~l~e~~~~L~~ll~~~---~~~~~piLIl~NK~D~~~-~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~ 159 (175)
T PF00025_consen 84 GIIFVVDSSDPERLQEAKEELKELLNDP---ELKDIPILILANKQDLPD-AMSEEEIKEYLGLEKLKNKRPWSVFSCSAK 159 (175)
T ss_dssp EEEEEEETTGGGGHHHHHHHHHHHHTSG---GGTTSEEEEEEESTTSTT-SSTHHHHHHHTTGGGTTSSSCEEEEEEBTT
T ss_pred eeEEEEecccceeecccccchhhhcchh---hcccceEEEEeccccccC-cchhhHHHhhhhhhhcccCCceEEEeeecc
Confidence 9999999999988888776665554431 345799999999999875 3445555544432 21 1235889999
Q ss_pred CCccHHHHHHHHHHHH
Q psy14768 393 EHLMIEDSMNFLVDRI 408 (452)
Q Consensus 393 tg~nv~~lf~~i~~~i 408 (452)
+|+|+.+.|+||.+++
T Consensus 160 ~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 160 TGEGVDEGLEWLIEQI 175 (175)
T ss_dssp TTBTHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhcC
Confidence 9999999999999875
No 142
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.81 E-value=3.8e-19 Score=159.73 Aligned_cols=157 Identities=13% Similarity=0.131 Sum_probs=111.7
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecC-CeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~-~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
.|+++|.+|+|||||+++|....+.....++++.+.....+.. + .....+.+|||+|++.|..++..++..+|+++
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il 78 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPA---EVLKIPGITFIDTPGHEAFTNMRARGASLTDIAI 78 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEec---ccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEE
Confidence 4899999999999999999988777665566665554444443 2 23578899999999999988888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCc--ccHHHHHHHHH----HcC-CCEEEEecCCC
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQ--VEINEIEAVCH----QYN-FMSWIEVSSKE 393 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~e~~~~~~~----~~~-~~~~~evSAkt 393 (452)
+|+|+++....+....+ ..+.. .++|+++|+||+|+.+.. ...+....+.. ..+ ..+++++||++
T Consensus 79 ~v~d~~~~~~~~~~~~~-~~~~~-------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (168)
T cd01887 79 LVVAADDGVMPQTIEAI-KLAKA-------ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKT 150 (168)
T ss_pred EEEECCCCccHHHHHHH-HHHHH-------cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeeccc
Confidence 99999986433333222 22222 348999999999986411 11111211111 111 13489999999
Q ss_pred CccHHHHHHHHHHHHH
Q psy14768 394 HLMIEDSMNFLVDRII 409 (452)
Q Consensus 394 g~nv~~lf~~i~~~i~ 409 (452)
|.|+.++|+++.+...
T Consensus 151 ~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 151 GEGIDDLLEAILLLAE 166 (168)
T ss_pred CCCHHHHHHHHHHhhh
Confidence 9999999999987654
No 143
>KOG0073|consensus
Probab=99.80 E-value=7.3e-19 Score=152.29 Aligned_cols=159 Identities=25% Similarity=0.406 Sum_probs=127.4
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
.+++|.++|..|+|||+++++|.+.. .....||.|....+.. + +.+++++||.+||...+..|..||+.+|+
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~--~-----~~~~L~iwDvGGq~~lr~~W~nYfestdg 86 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLE--Y-----KGYTLNIWDVGGQKTLRSYWKNYFESTDG 86 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEE--e-----cceEEEEEEcCCcchhHHHHHHhhhccCe
Confidence 37899999999999999999999766 5566788886665443 3 56889999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHH------HHHHHHHHcCCCEEEEecCC
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN------EIEAVCHQYNFMSWIEVSSK 392 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e------~~~~~~~~~~~~~~~evSAk 392 (452)
+|+|+|.++...+++....+..+... ......|++|++||.|+.. ....+ +...+++...+. .+.|||.
T Consensus 87 lIwvvDssD~~r~~e~~~~L~~lL~e---erlaG~~~Lvlank~dl~~-~l~~~~i~~~~~L~~l~ks~~~~-l~~cs~~ 161 (185)
T KOG0073|consen 87 LIWVVDSSDRMRMQECKQELTELLVE---ERLAGAPLLVLANKQDLPG-ALSLEEISKALDLEELAKSHHWR-LVKCSAV 161 (185)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhh---hhhcCCceEEEEecCcCcc-ccCHHHHHHhhCHHHhccccCce-EEEEecc
Confidence 99999999999888876544444222 1345689999999999974 12222 344455556666 8999999
Q ss_pred CCccHHHHHHHHHHHHHH
Q psy14768 393 EHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 393 tg~nv~~lf~~i~~~i~~ 410 (452)
+|+++.+-|+|++..+..
T Consensus 162 tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 162 TGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred ccccHHHHHHHHHHHHHH
Confidence 999999999999998876
No 144
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.80 E-value=3.1e-19 Score=158.54 Aligned_cols=148 Identities=16% Similarity=0.174 Sum_probs=111.8
Q ss_pred EeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh------hhhhhhc--CC
Q psy14768 245 ITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC------MSRVYYQ--NS 316 (452)
Q Consensus 245 ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~------~~~~~i~--~a 316 (452)
++|.+|+|||||++++.+..+.....++++.+.....+.+ ++ ..+.+|||||++.+.. ++..++. .+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~---~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 75 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKL---GG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKP 75 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEee---CC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCC
Confidence 5899999999999999987666666677777776666666 44 5789999999987654 3455664 99
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768 317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLM 396 (452)
Q Consensus 317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~n 396 (452)
|++|+|+|+++..... .|...+.. .++|+++|+||+|+.+..........+...++.. ++++||+++.|
T Consensus 76 d~vi~v~d~~~~~~~~---~~~~~~~~-------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~iSa~~~~~ 144 (158)
T cd01879 76 DLIVNVVDATNLERNL---YLTLQLLE-------LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVP-VVPTSARKGEG 144 (158)
T ss_pred cEEEEEeeCCcchhHH---HHHHHHHH-------cCCCEEEEEehhhhcccccchhhHHHHHHhhCCC-eEEEEccCCCC
Confidence 9999999998754322 33333332 2489999999999976222233455677777765 99999999999
Q ss_pred HHHHHHHHHHHH
Q psy14768 397 IEDSMNFLVDRI 408 (452)
Q Consensus 397 v~~lf~~i~~~i 408 (452)
+.++|+++.+.+
T Consensus 145 ~~~l~~~l~~~~ 156 (158)
T cd01879 145 IDELKDAIAELA 156 (158)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 145
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.80 E-value=4.7e-19 Score=178.27 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=116.7
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc-c--------hhhhhh
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ-D--------RYICMS 309 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~-e--------~~~~~~ 309 (452)
..++|+++|.+|+|||||+|+|++..+.....+.++.|.....+.+ .+ ...+.||||+|. + .|...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~---~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDL---PD-GGEVLLTDTVGFIRDLPHELVAAFRATL 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEe---CC-CceEEEEecCcccccCCHHHHHHHHHHH
Confidence 3489999999999999999999997776666677777887777665 32 347889999997 2 233322
Q ss_pred hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEe
Q psy14768 310 RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEV 389 (452)
Q Consensus 310 ~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~ev 389 (452)
..+.+||++|+|||++++.+++++..|...+... ...++|+++|+||+|+.+. +....+.. ...+++++
T Consensus 264 -e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l----~~~~~piIlV~NK~Dl~~~----~~v~~~~~--~~~~~i~i 332 (351)
T TIGR03156 264 -EEVREADLLLHVVDASDPDREEQIEAVEKVLEEL----GAEDIPQLLVYNKIDLLDE----PRIERLEE--GYPEAVFV 332 (351)
T ss_pred -HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh----ccCCCCEEEEEEeecCCCh----HhHHHHHh--CCCCEEEE
Confidence 2478999999999999999888887777766655 3346899999999999641 11222211 22348999
Q ss_pred cCCCCccHHHHHHHHHHH
Q psy14768 390 SSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~~ 407 (452)
||++|.|++++++++.+.
T Consensus 333 SAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 333 SAKTGEGLDLLLEAIAER 350 (351)
T ss_pred EccCCCCHHHHHHHHHhh
Confidence 999999999999998754
No 146
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.79 E-value=5.4e-19 Score=172.28 Aligned_cols=155 Identities=14% Similarity=0.079 Sum_probs=111.8
Q ss_pred cEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh-h----hh---hhhh
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY-I----CM---SRVY 312 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~-~----~~---~~~~ 312 (452)
+|+++|+||||||||+|+|+++.+. .+..+.++.+........ ...++.||||||+... . .+ ...+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~-----~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTT-----GASQIIFIDTPGFHEKKHSLNRLMMKEARSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEc-----CCcEEEEEECcCCCCCcchHHHHHHHHHHHH
Confidence 5899999999999999999997643 445555555543322222 2356899999997532 1 11 2346
Q ss_pred hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCC
Q psy14768 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSK 392 (452)
Q Consensus 313 i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAk 392 (452)
++.+|++++|+|+++..+++ ..+...+.. .++|+++|+||+|+.+.....+....+....++..++++||+
T Consensus 77 l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~-------~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~ 147 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWNGDG--EFVLTKLQN-------LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISAL 147 (270)
T ss_pred HhhCCEEEEEEECCCCCchH--HHHHHHHHh-------cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecC
Confidence 88999999999999887765 344444443 248999999999997533333455566666666568999999
Q ss_pred CCccHHHHHHHHHHHHHH
Q psy14768 393 EHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 393 tg~nv~~lf~~i~~~i~~ 410 (452)
+|.|++++++++.+.+..
T Consensus 148 ~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 148 TGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred CCCCHHHHHHHHHHhCCC
Confidence 999999999999887644
No 147
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.79 E-value=1.5e-18 Score=173.17 Aligned_cols=162 Identities=12% Similarity=0.067 Sum_probs=117.6
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh----hhhhhh---h
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY----ICMSRV---Y 312 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~----~~~~~~---~ 312 (452)
-..|+++|.||||||||++++.+.+......+.++.+...-.+.+ ++ ...+.||||||+.+. ..+... .
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~---~~-~~~~~i~D~PGli~~a~~~~gLg~~flrh 232 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRV---DD-GRSFVIADIPGLIEGASEGAGLGHRFLKH 232 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEe---CC-ceEEEEEeCCCcccCCcccccHHHHHHHH
Confidence 368999999999999999999986544333344444444444443 32 367899999997431 123333 3
Q ss_pred hcCCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEe
Q psy14768 313 YQNSDGCIIMFDLTNR---KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEV 389 (452)
Q Consensus 313 i~~ad~vIlV~D~t~~---~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~ev 389 (452)
++++|++|+|||+++. .+++++..|..++..+. ....++|++||+||+|+.+.....+..+.+.+.++.. ++++
T Consensus 233 ierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~--~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~-vi~i 309 (329)
T TIGR02729 233 IERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYS--PELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKP-VFPI 309 (329)
T ss_pred HHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhh--hhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCc-EEEE
Confidence 5679999999999987 68888888888887651 1124689999999999976322334455566666655 9999
Q ss_pred cCCCCccHHHHHHHHHHHH
Q psy14768 390 SSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~~i 408 (452)
||+++.||+++|+++.+.+
T Consensus 310 SAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 310 SALTGEGLDELLYALAELL 328 (329)
T ss_pred EccCCcCHHHHHHHHHHHh
Confidence 9999999999999998754
No 148
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.79 E-value=4.8e-19 Score=164.06 Aligned_cols=147 Identities=18% Similarity=0.226 Sum_probs=102.3
Q ss_pred cEEEeeecccCCcceeeeccc--ccccccc------------CCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh
Q psy14768 242 PILITGDSTVGKTSYVQGFVQ--NKFLDNY------------KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC 307 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~--~~~~~~~------------~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~ 307 (452)
+|+++|.+++|||||+++|+. ..+...+ ..+.+.++......+ +.+.+.+.+|||+|+++|..
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~---~~~~~~~~l~DtpG~~~~~~ 80 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAV---TYKDTKINIVDTPGHADFGG 80 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEE---EECCEEEEEEECCCcHHHHH
Confidence 689999999999999999996 3443322 122333343333334 45678899999999999999
Q ss_pred hhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C-cccHHHHHHHHHHc----
Q psy14768 308 MSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R-QVEINEIEAVCHQY---- 381 (452)
Q Consensus 308 ~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~-~~~~e~~~~~~~~~---- 381 (452)
++..+++.+|++|+|||+++.. +.....++..+.. .++|++||+||+|+.+ + ....+++.++...+
T Consensus 81 ~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~-------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (194)
T cd01891 81 EVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE-------LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATE 152 (194)
T ss_pred HHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH-------cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999753 2222333333322 3589999999999965 2 12234445554332
Q ss_pred ---CCCEEEEecCCCCccHHHH
Q psy14768 382 ---NFMSWIEVSSKEHLMIEDS 400 (452)
Q Consensus 382 ---~~~~~~evSAktg~nv~~l 400 (452)
++ +++++||++|.|+.++
T Consensus 153 ~~~~~-~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 153 EQLDF-PVLYASAKNGWASLNL 173 (194)
T ss_pred ccCcc-CEEEeehhcccccccc
Confidence 44 4899999999887443
No 149
>KOG0070|consensus
Probab=99.78 E-value=2.3e-18 Score=153.05 Aligned_cols=161 Identities=20% Similarity=0.337 Sum_probs=127.9
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
..+++|+++|-.++||||+++++-..+++.. .||+|.+..... + +.+.|.+||.+||++++.+|..|+.+.+
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~--y-----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~ 86 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVE--Y-----KNISFTVWDVGGQEKLRPLWKHYFQNTQ 86 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEE--E-----cceEEEEEecCCCcccccchhhhccCCc
Confidence 3468999999999999999999998877766 899997765544 3 4688999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHH-----cCCCEEEEecCC
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQ-----YNFMSWIEVSSK 392 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~-----~~~~~~~evSAk 392 (452)
++|+|+|.+|..-+..++.-+..+..+ ......|+++++||.|+.. ..+..++.+...- ..+. +..++|.
T Consensus 87 ~lIfVvDS~Dr~Ri~eak~eL~~~l~~---~~l~~~~llv~aNKqD~~~-als~~ei~~~L~l~~l~~~~w~-iq~~~a~ 161 (181)
T KOG0070|consen 87 GLIFVVDSSDRERIEEAKEELHRMLAE---PELRNAPLLVFANKQDLPG-ALSAAEITNKLGLHSLRSRNWH-IQSTCAI 161 (181)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHcC---cccCCceEEEEechhhccc-cCCHHHHHhHhhhhccCCCCcE-Eeecccc
Confidence 999999999998888877655555554 1346899999999999985 2223333332222 2222 5789999
Q ss_pred CCccHHHHHHHHHHHHHHh
Q psy14768 393 EHLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 393 tg~nv~~lf~~i~~~i~~~ 411 (452)
+|+++.+.++++...+...
T Consensus 162 ~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 162 SGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred ccccHHHHHHHHHHHHhcc
Confidence 9999999999999887653
No 150
>PRK04213 GTP-binding protein; Provisional
Probab=99.78 E-value=4.9e-19 Score=164.65 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=107.8
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC-----------cchhhh
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG-----------QDRYIC 307 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG-----------~e~~~~ 307 (452)
..++|+++|.+|||||||+|++.+..+...+.++++.+.. .+.+ . .+.+|||+| +++++.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~--~~~~---~----~~~l~Dt~G~~~~~~~~~~~~~~~~~ 78 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPN--HYDW---G----DFILTDLPGFGFMSGVPKEVQEKIKD 78 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCce--EEee---c----ceEEEeCCccccccccCHHHHHHHHH
Confidence 4589999999999999999999987776666666665432 2322 2 588999999 567777
Q ss_pred hhhhhhc----CCCEEEEEEeCCChhhHHH----------HHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHH
Q psy14768 308 MSRVYYQ----NSDGCIIMFDLTNRKSFES----------VVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINE 373 (452)
Q Consensus 308 ~~~~~i~----~ad~vIlV~D~t~~~S~~~----------~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~ 373 (452)
++..++. .++++++|+|.+....+.+ -..+...+. ..++|++||+||+|+.+.. .+.
T Consensus 79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~p~iiv~NK~Dl~~~~--~~~ 149 (201)
T PRK04213 79 EIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR-------ELGIPPIVAVNKMDKIKNR--DEV 149 (201)
T ss_pred HHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH-------HcCCCeEEEEECccccCcH--HHH
Confidence 6666654 4578888888764322100 011111121 1358999999999986522 345
Q ss_pred HHHHHHHcCC--C------EEEEecCCCCccHHHHHHHHHHHHHHhh
Q psy14768 374 IEAVCHQYNF--M------SWIEVSSKEHLMIEDSMNFLVDRIICSK 412 (452)
Q Consensus 374 ~~~~~~~~~~--~------~~~evSAktg~nv~~lf~~i~~~i~~~~ 412 (452)
..++.+.++. . +++++||++| ||+++|++|.+.+...+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 150 LDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred HHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 5666666664 1 3799999999 99999999998765443
No 151
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.78 E-value=1.3e-18 Score=160.90 Aligned_cols=161 Identities=17% Similarity=0.110 Sum_probs=107.1
Q ss_pred ccEEEeeecccCCcceeeecccc-------ccccccCCcceeeeEEEEEEeee---------cCCeeEEEEEEecCCcch
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQN-------KFLDNYKNTVGVDFSTKLLSHKK---------YGGRPVKLQIWDIAGQDR 304 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~-------~~~~~~~~t~~~d~~~~~i~~~~---------~~~~~~~l~l~DtaG~e~ 304 (452)
++|+++|++|+|||||+++|+.. ....+..++++.+.....+.+.. ..+..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999862 22222234455554444443310 023467899999999976
Q ss_pred hhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHH-H
Q psy14768 305 YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCH-Q 380 (452)
Q Consensus 305 ~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~-~ 380 (452)
+..........+|++++|+|++++.+.+..+.+.. . .. .++|+++|+||+|+.. .+...++..+... .
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~-~-~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~ 152 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI-G-EI------LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT 152 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH-H-HH------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH
Confidence 54433445677899999999998766665544332 1 11 2479999999999974 1112233332221 1
Q ss_pred -----cCCCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768 381 -----YNFMSWIEVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 381 -----~~~~~~~evSAktg~nv~~lf~~i~~~i~ 409 (452)
....+++++||++|.|++++++++..++.
T Consensus 153 ~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 153 LEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 12234899999999999999999988765
No 152
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.78 E-value=4.5e-19 Score=157.27 Aligned_cols=148 Identities=18% Similarity=0.225 Sum_probs=107.5
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh------hhhhhh--
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI------CMSRVY-- 312 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~------~~~~~~-- 312 (452)
++|+++|.||||||||+|++++.+......|+++.+.....+.+ .+ ..+.|+|+||.-... .+...+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~---~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~ 75 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKL---GD--QQVELVDLPGIYSLSSKSEEERVARDYLL 75 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEE---TT--EEEEEEE----SSSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEe---cC--ceEEEEECCCcccCCCCCcHHHHHHHHHh
Confidence 57999999999999999999998777788899998888777776 44 567788999953221 222333
Q ss_pred hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCC
Q psy14768 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSK 392 (452)
Q Consensus 313 i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAk 392 (452)
..+.|++|+|+|+++.+ .++....+.++. ++|+++|+||+|+..+.-...+.+.+.+.++++ .+.+||+
T Consensus 76 ~~~~D~ii~VvDa~~l~--r~l~l~~ql~e~--------g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~p-vi~~sa~ 144 (156)
T PF02421_consen 76 SEKPDLIIVVVDATNLE--RNLYLTLQLLEL--------GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVP-VIPVSAR 144 (156)
T ss_dssp HTSSSEEEEEEEGGGHH--HHHHHHHHHHHT--------TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS--EEEEBTT
T ss_pred hcCCCEEEEECCCCCHH--HHHHHHHHHHHc--------CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCC-EEEEEeC
Confidence 36899999999999753 333333333333 399999999999876222223467788888887 9999999
Q ss_pred CCccHHHHHHHH
Q psy14768 393 EHLMIEDSMNFL 404 (452)
Q Consensus 393 tg~nv~~lf~~i 404 (452)
++.|++++++.|
T Consensus 145 ~~~g~~~L~~~I 156 (156)
T PF02421_consen 145 TGEGIDELKDAI 156 (156)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHhhC
Confidence 999999999875
No 153
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.77 E-value=2.5e-18 Score=177.82 Aligned_cols=153 Identities=19% Similarity=0.235 Sum_probs=118.2
Q ss_pred CCcccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhh--------
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICM-------- 308 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~-------- 308 (452)
...++|+++|.+|||||||+|+|++.. ......++++.++....+.+ ++ ..+.+|||||++.+...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~---~g--~~v~l~DTaG~~~~~~~ie~~gi~~ 275 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFEL---NG--ILIKLLDTAGIREHADFVERLGIEK 275 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEE---CC--EEEEEeeCCCcccchhHHHHHHHHH
Confidence 346899999999999999999999854 34555678888888777776 54 55789999998654422
Q ss_pred hhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEE
Q psy14768 309 SRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIE 388 (452)
Q Consensus 309 ~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~e 388 (452)
...+++++|++|+|||++++.++++. |+..+.. .++|+++|+||+|+.+. +...+.+.++.. +++
T Consensus 276 ~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~-------~~~piIlV~NK~Dl~~~-----~~~~~~~~~~~~-~~~ 340 (442)
T TIGR00450 276 SFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK-------SKKPFILVLNKIDLKIN-----SLEFFVSSKVLN-SSN 340 (442)
T ss_pred HHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh-------CCCCEEEEEECccCCCc-----chhhhhhhcCCc-eEE
Confidence 23578999999999999999888775 6555432 35899999999998642 223455566655 899
Q ss_pred ecCCCCccHHHHHHHHHHHHHHh
Q psy14768 389 VSSKEHLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 389 vSAktg~nv~~lf~~i~~~i~~~ 411 (452)
+||++ .||+++|+.+.+.+.+.
T Consensus 341 vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 341 LSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred EEEec-CCHHHHHHHHHHHHHHH
Confidence 99998 69999999999888654
No 154
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.77 E-value=3.2e-18 Score=179.45 Aligned_cols=154 Identities=15% Similarity=0.116 Sum_probs=114.2
Q ss_pred cccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch--------hhhhhh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR--------YICMSR 310 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~--------~~~~~~ 310 (452)
..+|+|+|++|||||||+|++++... .....++++.+.....+.+ ++ ..+.+|||+|++. +...+.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~---~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~ 112 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW---NG--RRFTVVDTGGWEPDAKGLQASVAEQAE 112 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE---CC--cEEEEEeCCCcCCcchhHHHHHHHHHH
Confidence 36899999999999999999998653 4566677777776666655 44 4578999999763 333445
Q ss_pred hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEec
Q psy14768 311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVS 390 (452)
Q Consensus 311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evS 390 (452)
.+++.||++|+|||++++.++.+. .|...+.. .++|++||+||+|+.... .+..+.+ .+++...++||
T Consensus 113 ~~~~~aD~il~VvD~~~~~s~~~~-~i~~~l~~-------~~~piilV~NK~Dl~~~~--~~~~~~~--~~g~~~~~~iS 180 (472)
T PRK03003 113 VAMRTADAVLFVVDATVGATATDE-AVARVLRR-------SGKPVILAANKVDDERGE--ADAAALW--SLGLGEPHPVS 180 (472)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHH-------cCCCEEEEEECccCCccc--hhhHHHH--hcCCCCeEEEE
Confidence 678999999999999998777653 34444433 359999999999986421 1222222 34443457999
Q ss_pred CCCCccHHHHHHHHHHHHHH
Q psy14768 391 SKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 391 Aktg~nv~~lf~~i~~~i~~ 410 (452)
|++|.|++++|++++..+.+
T Consensus 181 A~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 181 ALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred cCCCCCcHHHHHHHHhhccc
Confidence 99999999999999988754
No 155
>KOG4423|consensus
Probab=99.76 E-value=1.9e-20 Score=165.17 Aligned_cols=170 Identities=41% Similarity=0.761 Sum_probs=153.7
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCC-eeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG-RPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~-~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
-+|+.|+|.-++||++++.+++...|...|.+|+|.|+..+...+ +. ..+.++|||.+||++|..|..-||+.+++
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~w---dd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQW---DDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhcc---ChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 478999999999999999999999999999999999998887777 44 44679999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--RQVEINEIEAVCHQYNFMSWIEVSSKEHLM 396 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--~~~~~e~~~~~~~~~~~~~~~evSAktg~n 396 (452)
.++|||++...+|+....|...+............|+|+..||||... .........++.++.++..++++|+|.+.|
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn 181 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN 181 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence 999999999999999999999999888888888899999999999976 333357888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy14768 397 IEDSMNFLVDRIICSK 412 (452)
Q Consensus 397 v~~lf~~i~~~i~~~~ 412 (452)
+.|+-..+++.+.-..
T Consensus 182 i~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 182 IPEAQRELVEKILVND 197 (229)
T ss_pred hhHHHHHHHHHHHhhc
Confidence 9999999998887554
No 156
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.76 E-value=4.3e-18 Score=155.59 Aligned_cols=154 Identities=14% Similarity=0.155 Sum_probs=110.3
Q ss_pred cEEEeeecccCCcceeeeccccccccccC----------------CcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYK----------------NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY 305 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~----------------~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~ 305 (452)
+|+++|.+|+|||||+|.+++........ .+++.+.....+. .....+.+|||+|+..+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~liDtpG~~~~ 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFE-----WPDRRVNFIDTPGHEDF 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEe-----eCCEEEEEEeCCCcHHH
Confidence 48999999999999999998765543321 2223333222332 24568999999999998
Q ss_pred hhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCC---cccHHHHHHHHHHcC
Q psy14768 306 ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDR---QVEINEIEAVCHQYN 382 (452)
Q Consensus 306 ~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~---~~~~e~~~~~~~~~~ 382 (452)
...+..++..+|++++|+|++++.+.+....+ ..+.. .++|+++|+||+|+... ....+++.+..+..+
T Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~-------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (189)
T cd00881 76 SSEVIRGLSVSDGAILVVDANEGVQPQTREHL-RIARE-------GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIG 147 (189)
T ss_pred HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHH-HHHHH-------CCCCeEEEEECCCCcchhcHHHHHHHHHHHHcccc
Confidence 88888899999999999999987766544332 22222 35999999999999751 112233444444322
Q ss_pred -------------CCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768 383 -------------FMSWIEVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 383 -------------~~~~~evSAktg~nv~~lf~~i~~~i 408 (452)
..+++++||++|.|++++|.++.+.+
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 148 FISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred ccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 35589999999999999999998875
No 157
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.76 E-value=9.7e-18 Score=145.44 Aligned_cols=153 Identities=37% Similarity=0.664 Sum_probs=117.0
Q ss_pred EeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEE
Q psy14768 245 ITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMF 323 (452)
Q Consensus 245 ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~ 323 (452)
++|.+|+|||||++++.+... .....++. .+........ ......+.+||++|+..+...+..++..+|++++||
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 76 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEV---DGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVY 76 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEE---CCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999998766 44444444 6666666665 566789999999999988887788899999999999
Q ss_pred eCCChhhHHHHHHHHHH-HHhhhhhcCCCCCcEEEEEECCCCCCCcccHHH-HHHHHHHcCCCEEEEecCCCCccHHHHH
Q psy14768 324 DLTNRKSFESVVQWKHD-LDSKCILDNGAMLPCLLLASKCDLPDRQVEINE-IEAVCHQYNFMSWIEVSSKEHLMIEDSM 401 (452)
Q Consensus 324 D~t~~~S~~~~~~~~~~-i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~-~~~~~~~~~~~~~~evSAktg~nv~~lf 401 (452)
|++++.++..+..|... +... ...++|+++|+||.|+......... ...........+++++||+++.++++++
T Consensus 77 d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 152 (157)
T cd00882 77 DVTDRESFENVKEWLLLILINK----EGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELF 152 (157)
T ss_pred ECcCHHHHHHHHHHHHHHHHhh----ccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHH
Confidence 99999999998877322 2222 3567999999999998762222222 1233334444559999999999999999
Q ss_pred HHHH
Q psy14768 402 NFLV 405 (452)
Q Consensus 402 ~~i~ 405 (452)
+++.
T Consensus 153 ~~l~ 156 (157)
T cd00882 153 EELA 156 (157)
T ss_pred HHHh
Confidence 9875
No 158
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.76 E-value=2.4e-18 Score=155.63 Aligned_cols=158 Identities=13% Similarity=0.153 Sum_probs=105.9
Q ss_pred EeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch----hhhhh---hhhhcCCC
Q psy14768 245 ITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR----YICMS---RVYYQNSD 317 (452)
Q Consensus 245 ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~----~~~~~---~~~i~~ad 317 (452)
++|++|||||||+|++.+........+.++.+.....+.+ + ....+.+|||||+.. +..++ ...++.+|
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~---~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d 76 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEV---P-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRAD 76 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEc---C-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccC
Confidence 5899999999999999987653333333444433333333 2 145689999999732 22222 34578899
Q ss_pred EEEEEEeCCCh------hhHHHHHHHHHHHHhhhhh---cCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEE
Q psy14768 318 GCIIMFDLTNR------KSFESVVQWKHDLDSKCIL---DNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWI 387 (452)
Q Consensus 318 ~vIlV~D~t~~------~S~~~~~~~~~~i~~~~~~---~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~ 387 (452)
++++|+|+++. .+++++..|...+...... ....++|+++|+||+|+.. ...............+ ..++
T Consensus 77 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~ 155 (176)
T cd01881 77 AILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEG-AEVV 155 (176)
T ss_pred EEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCC-CCEE
Confidence 99999999988 5788888887777654100 0013699999999999975 2222211222222333 3489
Q ss_pred EecCCCCccHHHHHHHHHHH
Q psy14768 388 EVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 388 evSAktg~nv~~lf~~i~~~ 407 (452)
++||+++.|++++++++...
T Consensus 156 ~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 156 PISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EEehhhhcCHHHHHHHHHhh
Confidence 99999999999999998764
No 159
>PRK11058 GTPase HflX; Provisional
Probab=99.76 E-value=6.8e-18 Score=173.74 Aligned_cols=158 Identities=14% Similarity=0.113 Sum_probs=116.0
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh--hhhhh------hh
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY--ICMSR------VY 312 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~--~~~~~------~~ 312 (452)
.+|+++|.+|+|||||+|++++..+.....++++.|.....+.+ .+. ..+.+|||+|..+. ..++. ..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l---~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~ 273 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDV---ADV-GETVLADTVGFIRHLPHDLVAAFKATLQE 273 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEe---CCC-CeEEEEecCcccccCCHHHHHHHHHHHHH
Confidence 68999999999999999999987665666677777777666665 332 25779999997331 22222 34
Q ss_pred hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCC
Q psy14768 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSK 392 (452)
Q Consensus 313 i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAk 392 (452)
++.||++|+|+|++++.+++++..|...+... ...++|+++|+||+|+.+... ..... ...+...++++||+
T Consensus 274 ~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el----~~~~~pvIiV~NKiDL~~~~~--~~~~~--~~~~~~~~v~ISAk 345 (426)
T PRK11058 274 TRQATLLLHVVDAADVRVQENIEAVNTVLEEI----DAHEIPTLLVMNKIDMLDDFE--PRIDR--DEENKPIRVWLSAQ 345 (426)
T ss_pred hhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh----ccCCCCEEEEEEcccCCCchh--HHHHH--HhcCCCceEEEeCC
Confidence 68999999999999998888887666666554 234689999999999964211 11111 12344435889999
Q ss_pred CCccHHHHHHHHHHHHHH
Q psy14768 393 EHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 393 tg~nv~~lf~~i~~~i~~ 410 (452)
+|.|++++++++...+..
T Consensus 346 tG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 346 TGAGIPLLFQALTERLSG 363 (426)
T ss_pred CCCCHHHHHHHHHHHhhh
Confidence 999999999999988753
No 160
>KOG0075|consensus
Probab=99.76 E-value=4.9e-18 Score=144.35 Aligned_cols=156 Identities=24% Similarity=0.412 Sum_probs=124.5
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
++.+.++|..++|||||+|....+.+..+..||.|.+.... ....+.+.+||.+||.+|+++|+.|++.++++
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~-------tkgnvtiklwD~gGq~rfrsmWerycR~v~ai 92 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKV-------TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAI 92 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEe-------ccCceEEEEEecCCCccHHHHHHHHhhcCcEE
Confidence 57788999999999999999999899999999999655433 44668899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCE-------EEEecCC
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMS-------WIEVSSK 392 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~-------~~evSAk 392 (452)
++|+|+.++......+.-++.+... +...++|+++.|||.|+.+ .. .-.++..++|... +|.+||+
T Consensus 93 vY~VDaad~~k~~~sr~EL~~LL~k---~~l~gip~LVLGnK~d~~~-AL---~~~~li~rmgL~sitdREvcC~siSck 165 (186)
T KOG0075|consen 93 VYVVDAADPDKLEASRSELHDLLDK---PSLTGIPLLVLGNKIDLPG-AL---SKIALIERMGLSSITDREVCCFSISCK 165 (186)
T ss_pred EEEeecCCcccchhhHHHHHHHhcc---hhhcCCcEEEecccccCcc-cc---cHHHHHHHhCccccccceEEEEEEEEc
Confidence 9999999987776665433333222 2567899999999999875 11 1234445554422 5999999
Q ss_pred CCccHHHHHHHHHHHHH
Q psy14768 393 EHLMIEDSMNFLVDRII 409 (452)
Q Consensus 393 tg~nv~~lf~~i~~~i~ 409 (452)
+..|++.+.+|+++.-.
T Consensus 166 e~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 166 EKVNIDITLDWLIEHSK 182 (186)
T ss_pred CCccHHHHHHHHHHHhh
Confidence 99999999999987643
No 161
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=3.8e-18 Score=151.01 Aligned_cols=147 Identities=15% Similarity=0.099 Sum_probs=103.9
Q ss_pred EEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh--------hhhhhhc
Q psy14768 244 LITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC--------MSRVYYQ 314 (452)
Q Consensus 244 ~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~--------~~~~~i~ 314 (452)
+++|.+|+|||||+|++++... .....+.++.+........ ....+.+|||+|+..+.. ....+++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW-----GGREFILIDTGGIEPDDEGISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE-----CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHH
Confidence 4799999999999999998542 2233345555555444444 336789999999877543 2345688
Q ss_pred CCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCC
Q psy14768 315 NSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEH 394 (452)
Q Consensus 315 ~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg 394 (452)
.+|++++|+|+.+..+..+.. +...+.. .+.|+++|+||+|+.+... .......++...++++||+++
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~~-~~~~~~~-------~~~piiiv~nK~D~~~~~~----~~~~~~~~~~~~~~~~Sa~~~ 143 (157)
T cd01894 76 EADVILFVVDGREGLTPADEE-IAKYLRK-------SKKPVILVVNKVDNIKEED----EAAEFYSLGFGEPIPISAEHG 143 (157)
T ss_pred hCCEEEEEEeccccCCccHHH-HHHHHHh-------cCCCEEEEEECcccCChHH----HHHHHHhcCCCCeEEEecccC
Confidence 999999999998876655432 2222322 2389999999999975211 123344566645899999999
Q ss_pred ccHHHHHHHHHHH
Q psy14768 395 LMIEDSMNFLVDR 407 (452)
Q Consensus 395 ~nv~~lf~~i~~~ 407 (452)
.|++++|+++++.
T Consensus 144 ~gv~~l~~~l~~~ 156 (157)
T cd01894 144 RGIGDLLDAILEL 156 (157)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999865
No 162
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.76 E-value=2.9e-18 Score=153.79 Aligned_cols=141 Identities=18% Similarity=0.221 Sum_probs=101.5
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc-----hhhhhhhhhhcCC
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD-----RYICMSRVYYQNS 316 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e-----~~~~~~~~~i~~a 316 (452)
+|+++|++|+|||||+|++.+..... ..+. .+.+ ... .+|||||+. .+..+ ...++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~~-------~v~~---~~~----~~iDtpG~~~~~~~~~~~~-~~~~~~a 65 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKTQ-------AVEF---NDK----GDIDTPGEYFSHPRWYHAL-ITTLQDV 65 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC--ccce-------EEEE---CCC----CcccCCccccCCHHHHHHH-HHHHhcC
Confidence 69999999999999999987643211 1111 1222 222 269999972 22332 2347899
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCC-CEEEEecCCCCc
Q psy14768 317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNF-MSWIEVSSKEHL 395 (452)
Q Consensus 317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~-~~~~evSAktg~ 395 (452)
|++|+|+|+++..++.. .|+..+. .++|+++++||+|+.+ ...+.+.+++.++++ .+++++||++|+
T Consensus 66 d~il~v~d~~~~~s~~~--~~~~~~~--------~~~~ii~v~nK~Dl~~--~~~~~~~~~~~~~~~~~p~~~~Sa~~g~ 133 (158)
T PRK15467 66 DMLIYVHGANDPESRLP--AGLLDIG--------VSKRQIAVISKTDMPD--ADVAATRKLLLETGFEEPIFELNSHDPQ 133 (158)
T ss_pred CEEEEEEeCCCcccccC--HHHHhcc--------CCCCeEEEEEccccCc--ccHHHHHHHHHHcCCCCCEEEEECCCcc
Confidence 99999999998877633 3433322 2479999999999864 345667788888886 369999999999
Q ss_pred cHHHHHHHHHHHHHHh
Q psy14768 396 MIEDSMNFLVDRIICS 411 (452)
Q Consensus 396 nv~~lf~~i~~~i~~~ 411 (452)
|++++|+.+.+.+.+.
T Consensus 134 gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 134 SVQQLVDYLASLTKQE 149 (158)
T ss_pred CHHHHHHHHHHhchhh
Confidence 9999999998776543
No 163
>PRK15494 era GTPase Era; Provisional
Probab=99.76 E-value=6.9e-18 Score=169.42 Aligned_cols=157 Identities=16% Similarity=0.228 Sum_probs=111.3
Q ss_pred CcccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch-hhhhh-------
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR-YICMS------- 309 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~-~~~~~------- 309 (452)
...+|+++|++|||||||+|+|+++.+. .+..+.++.+.....+.. + ..++.||||||+.. +..+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~---~--~~qi~~~DTpG~~~~~~~l~~~~~r~~ 125 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITL---K--DTQVILYDTPGIFEPKGSLEKAMVRCA 125 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEe---C--CeEEEEEECCCcCCCcccHHHHHHHHH
Confidence 3579999999999999999999987653 233445556665555544 3 35689999999843 32221
Q ss_pred hhhhcCCCEEEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcC-CCEEE
Q psy14768 310 RVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYN-FMSWI 387 (452)
Q Consensus 310 ~~~i~~ad~vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~-~~~~~ 387 (452)
..++..+|++|+|+|.++ +|.... .|+..+... +.|.+||+||+|+.+. ...++.+++.... +..++
T Consensus 126 ~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~-------~~p~IlViNKiDl~~~--~~~~~~~~l~~~~~~~~i~ 194 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL-------NIVPIFLLNKIDIESK--YLNDIKAFLTENHPDSLLF 194 (339)
T ss_pred HHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc-------CCCEEEEEEhhcCccc--cHHHHHHHHHhcCCCcEEE
Confidence 134789999999999876 344443 344444432 3677899999998642 2445556655543 45689
Q ss_pred EecCCCCccHHHHHHHHHHHHHHh
Q psy14768 388 EVSSKEHLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 388 evSAktg~nv~~lf~~i~~~i~~~ 411 (452)
++||++|.|++++|+++...+...
T Consensus 195 ~iSAktg~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 195 PISALSGKNIDGLLEYITSKAKIS 218 (339)
T ss_pred EEeccCccCHHHHHHHHHHhCCCC
Confidence 999999999999999998876544
No 164
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.75 E-value=8.6e-18 Score=179.75 Aligned_cols=159 Identities=16% Similarity=0.218 Sum_probs=118.0
Q ss_pred cEEEeeecccCCcceeeeccccc-------cccccCCc------ceeeeEEE--EEEeeecCCeeEEEEEEecCCcchhh
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNK-------FLDNYKNT------VGVDFSTK--LLSHKKYGGRPVKLQIWDIAGQDRYI 306 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~-------~~~~~~~t------~~~d~~~~--~i~~~~~~~~~~~l~l~DtaG~e~~~ 306 (452)
+++++|..++|||||+++|+... +...+..+ .|.++... .+.+...++..+.+.||||||++.|.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 68999999999999999998632 12222221 13333333 23331114566899999999999999
Q ss_pred hhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCC--
Q psy14768 307 CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFM-- 384 (452)
Q Consensus 307 ~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~-- 384 (452)
..+..+++.+|++|+|||++++.+++....|...+.. ++|+++|+||+|+.+. ...+...++.+.++..
T Consensus 85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~--------~ipiIiViNKiDl~~~-~~~~~~~el~~~lg~~~~ 155 (595)
T TIGR01393 85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALEN--------DLEIIPVINKIDLPSA-DPERVKKEIEEVIGLDAS 155 (595)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHc--------CCCEEEEEECcCCCcc-CHHHHHHHHHHHhCCCcc
Confidence 9899999999999999999999888888777665543 3899999999998641 1223345566656653
Q ss_pred EEEEecCCCCccHHHHHHHHHHHHH
Q psy14768 385 SWIEVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 385 ~~~evSAktg~nv~~lf~~i~~~i~ 409 (452)
.++++||++|.||+++|+++.+.+.
T Consensus 156 ~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 156 EAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred eEEEeeccCCCCHHHHHHHHHHhCC
Confidence 4799999999999999999987764
No 165
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=1.7e-17 Score=148.97 Aligned_cols=155 Identities=15% Similarity=0.169 Sum_probs=107.3
Q ss_pred cccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh----------hhh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY----------ICM 308 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~----------~~~ 308 (452)
.++|+++|.+|+|||||+|++++... .....++++.+.....+.. ++ ..+.+|||+|.... ..+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~ 76 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEY---DG--KKYTLIDTAGIRRKGKVEEGIEKYSVL 76 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEE---CC--eeEEEEECCCCccccchhccHHHHHHH
Confidence 47899999999999999999998653 3344455555555455544 43 45789999996432 211
Q ss_pred h-hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCC-cccHHH-HHHHHHHcC---
Q psy14768 309 S-RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDR-QVEINE-IEAVCHQYN--- 382 (452)
Q Consensus 309 ~-~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~-~~~~e~-~~~~~~~~~--- 382 (452)
. ..++..+|++|+|+|++++.+++....+..... .+.|+++|+||+|+.+. ....+. ...+.+.++
T Consensus 77 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--------~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (174)
T cd01895 77 RTLKAIERADVVLLVIDATEGITEQDLRIAGLILE--------EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLD 148 (174)
T ss_pred HHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh--------cCCCEEEEEeccccCCccHHHHHHHHHHHHhhccccc
Confidence 1 235789999999999999888776543322222 24899999999999752 122222 233333333
Q ss_pred CCEEEEecCCCCccHHHHHHHHHHH
Q psy14768 383 FMSWIEVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 383 ~~~~~evSAktg~nv~~lf~~i~~~ 407 (452)
..+++++||+++.|+.++++++.+.
T Consensus 149 ~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 149 YAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred CCceEEEeccCCCCHHHHHHHHHHh
Confidence 3458999999999999999998764
No 166
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.74 E-value=6e-18 Score=175.90 Aligned_cols=149 Identities=17% Similarity=0.184 Sum_probs=114.9
Q ss_pred CcccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhh--------h
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICM--------S 309 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~--------~ 309 (452)
..++|+++|.+|+|||||+|++++... .....++++.|+....+.+ ++ ..+.+|||+|++.+... .
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~---~g--~~i~l~DT~G~~~~~~~ie~~gi~~~ 288 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINL---DG--IPLRLIDTAGIRETDDEVEKIGIERS 288 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEE---CC--eEEEEEeCCCCCCCccHHHHHHHHHH
Confidence 358999999999999999999998653 4566677888887777766 44 56889999998765422 1
Q ss_pred hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEe
Q psy14768 310 RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEV 389 (452)
Q Consensus 310 ~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~ev 389 (452)
..+++++|++|+|||++++.++++...|.. . .++|+++|+||+|+.+.... . ...+ .+++++
T Consensus 289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~~----~------~~~piiiV~NK~DL~~~~~~-~------~~~~-~~~i~i 350 (449)
T PRK05291 289 REAIEEADLVLLVLDASEPLTEEDDEILEE----L------KDKPVIVVLNKADLTGEIDL-E------EENG-KPVIRI 350 (449)
T ss_pred HHHHHhCCEEEEEecCCCCCChhHHHHHHh----c------CCCCcEEEEEhhhccccchh-h------hccC-CceEEE
Confidence 236889999999999999988887655543 1 34899999999999751111 1 2223 348999
Q ss_pred cCCCCccHHHHHHHHHHHHHH
Q psy14768 390 SSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~~i~~ 410 (452)
||++|.|++++++++.+.+..
T Consensus 351 SAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 351 SAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred EeeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999988754
No 167
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=2.2e-17 Score=171.22 Aligned_cols=168 Identities=13% Similarity=0.086 Sum_probs=118.5
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch----hhhhh---hhh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR----YICMS---RVY 312 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~----~~~~~---~~~ 312 (452)
..+|+++|.||+|||||+|+|++.+......+.++++...-.+.+ . ...|+||||||... ...+. ...
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~---~--~~~f~laDtPGliegas~g~gLg~~fLrh 233 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQA---G--DTRFTVADVPGLIPGASEGKGLGLDFLRH 233 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEE---C--CeEEEEEECCCCccccchhhHHHHHHHHH
Confidence 378999999999999999999986554444566666655555544 3 35789999999632 11121 234
Q ss_pred hcCCCEEEEEEeCCCh----hhHHHHHHHHHHHHhhhhh-------cCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHc
Q psy14768 313 YQNSDGCIIMFDLTNR----KSFESVVQWKHDLDSKCIL-------DNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQY 381 (452)
Q Consensus 313 i~~ad~vIlV~D~t~~----~S~~~~~~~~~~i~~~~~~-------~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~ 381 (452)
++++|++|+|+|+++. ..++++..|..++..+... .....+|+|||+||+|+.+.....+.........
T Consensus 234 ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~ 313 (500)
T PRK12296 234 IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEAR 313 (500)
T ss_pred HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHc
Confidence 7889999999999853 3566777777777655210 0124689999999999975222223333344455
Q ss_pred CCCEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 382 NFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 382 ~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
++. ++++||+++.||++++.++.+.+...+.
T Consensus 314 g~~-Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 314 GWP-VFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred CCe-EEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 654 9999999999999999999998876553
No 168
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=2e-17 Score=168.46 Aligned_cols=167 Identities=14% Similarity=0.071 Sum_probs=122.1
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh-------hhhhhhh
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI-------CMSRVYY 313 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~-------~~~~~~i 313 (452)
..|+++|.||||||||+|++++.+......+.+++....-.+.+ . ....++|+||||..+-. ......+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~---~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i 235 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRV---D-DERSFVVADIPGLIEGASEGAGLGIRFLKHL 235 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEe---C-CCcEEEEEeCCCccccccchhhHHHHHHHHH
Confidence 57999999999999999999987666666676766665555544 2 23458899999974311 1112358
Q ss_pred cCCCEEEEEEeCC---ChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCC-EEEEe
Q psy14768 314 QNSDGCIIMFDLT---NRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFM-SWIEV 389 (452)
Q Consensus 314 ~~ad~vIlV~D~t---~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~-~~~ev 389 (452)
+++|++++|+|++ +...+++...|..++..+. .....+|++||+||+|+.......+.++++.+.+++. .++.+
T Consensus 236 ~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~--~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~I 313 (390)
T PRK12298 236 ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYS--PKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLI 313 (390)
T ss_pred HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhh--hhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEE
Confidence 8999999999998 4567777788888877651 1124689999999999975332334555566665542 48999
Q ss_pred cCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 390 SSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
||+++.+|+++++++.+.+.+...
T Consensus 314 SA~tg~GIdeLl~~I~~~L~~~~~ 337 (390)
T PRK12298 314 SAASGLGVKELCWDLMTFIEENPR 337 (390)
T ss_pred ECCCCcCHHHHHHHHHHHhhhCcc
Confidence 999999999999999998866543
No 169
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.73 E-value=2.8e-17 Score=175.05 Aligned_cols=155 Identities=14% Similarity=0.212 Sum_probs=118.3
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
....+|+++|+.++|||||++++.+..+...+.++++.++....+.+ ++. ..+.||||||++.|..++...+..+|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~---~~~-~~i~~iDTPGhe~F~~~r~rga~~aD 160 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVEN---EDG-KMITFLDTPGHEAFTSMRARGAKVTD 160 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEE---CCC-cEEEEEECCCCcchhhHHHhhhccCC
Confidence 45678999999999999999999988887777777877776666655 332 26889999999999999998999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCC--------CEEEEe
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNF--------MSWIEV 389 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~--------~~~~ev 389 (452)
++|||||++++..-+..+.+.. .. ..++|+++++||+|+.+ ...+++...+...++ .+|+++
T Consensus 161 iaILVVda~dgv~~qT~e~i~~-~~-------~~~vPiIVviNKiDl~~--~~~e~v~~~L~~~g~~~~~~~~~~~~v~i 230 (587)
T TIGR00487 161 IVVLVVAADDGVMPQTIEAISH-AK-------AANVPIIVAINKIDKPE--ANPDRVKQELSEYGLVPEDWGGDTIFVPV 230 (587)
T ss_pred EEEEEEECCCCCCHhHHHHHHH-HH-------HcCCCEEEEEECccccc--CCHHHHHHHHHHhhhhHHhcCCCceEEEE
Confidence 9999999998654444433322 11 23589999999999864 223344444433321 358999
Q ss_pred cCCCCccHHHHHHHHHH
Q psy14768 390 SSKEHLMIEDSMNFLVD 406 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~ 406 (452)
||++|.|++++|+++..
T Consensus 231 SAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 231 SALTGDGIDELLDMILL 247 (587)
T ss_pred ECCCCCChHHHHHhhhh
Confidence 99999999999999874
No 170
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.73 E-value=4.8e-17 Score=166.64 Aligned_cols=163 Identities=12% Similarity=0.118 Sum_probs=118.9
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch----hhhhhhhh---h
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR----YICMSRVY---Y 313 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~----~~~~~~~~---i 313 (452)
..|+++|.||||||||+|++++.+......+.++.+...-.+.+ + ....+.|||+||... ...+...+ +
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~---~-~~~~~~laD~PGliega~~~~gLg~~fLrhi 234 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVET---D-DGRSFVMADIPGLIEGASEGVGLGHQFLRHI 234 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEE---e-CCceEEEEECCCCcccccccchHHHHHHHHH
Confidence 68999999999999999999986543333455554443333333 2 145688999999742 22233333 5
Q ss_pred cCCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEec
Q psy14768 314 QNSDGCIIMFDLTNR---KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVS 390 (452)
Q Consensus 314 ~~ad~vIlV~D~t~~---~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evS 390 (452)
++++++|+|+|+++. .++++...|..++..+. .....+|++||+||+|+.+ ..+.++++.+.++. +++++|
T Consensus 235 er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~--~~L~~kP~IVV~NK~DL~~---~~e~l~~l~~~l~~-~i~~iS 308 (424)
T PRK12297 235 ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYN--PRLLERPQIVVANKMDLPE---AEENLEEFKEKLGP-KVFPIS 308 (424)
T ss_pred hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhc--hhccCCcEEEEEeCCCCcC---CHHHHHHHHHHhCC-cEEEEe
Confidence 679999999999865 67888888888887751 1124699999999999853 23455667777764 489999
Q ss_pred CCCCccHHHHHHHHHHHHHHhhh
Q psy14768 391 SKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 391 Aktg~nv~~lf~~i~~~i~~~~~ 413 (452)
|+++.|++++++++.+.+.+.+.
T Consensus 309 A~tgeGI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 309 ALTGQGLDELLYAVAELLEETPE 331 (424)
T ss_pred CCCCCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999988766543
No 171
>KOG1673|consensus
Probab=99.73 E-value=2.7e-17 Score=141.08 Aligned_cols=165 Identities=25% Similarity=0.468 Sum_probs=143.6
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..+||.++|++..|||||+-++.++.+...+..+.|.++..+++.+ .+..+.+.+||..|++++..+.+....++-+
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i---~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSI---RGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEe---cceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 3589999999999999999999999888888899999999999999 8999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC------CcccHHHHHHHHHHcCCCEEEEecCC
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD------RQVEINEIEAVCHQYNFMSWIEVSSK 392 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~------~~~~~e~~~~~~~~~~~~~~~evSAk 392 (452)
++++||++.+.+...+..|+.+.... +..-+| |+||+|.|+.- .+....+.+.+++-++.. .||+|+.
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~----NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAs-L~F~Sts 169 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGL----NKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNAS-LFFCSTS 169 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhcc----CCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCc-EEEeecc
Confidence 99999999999999999999988765 334455 56899999742 233344577788888887 9999999
Q ss_pred CCccHHHHHHHHHHHHHHhh
Q psy14768 393 EHLMIEDSMNFLVDRIICSK 412 (452)
Q Consensus 393 tg~nv~~lf~~i~~~i~~~~ 412 (452)
.+.||+++|.-++..+.+..
T Consensus 170 ~sINv~KIFK~vlAklFnL~ 189 (205)
T KOG1673|consen 170 HSINVQKIFKIVLAKLFNLP 189 (205)
T ss_pred ccccHHHHHHHHHHHHhCCc
Confidence 99999999999988877543
No 172
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.73 E-value=3.2e-17 Score=144.94 Aligned_cols=146 Identities=16% Similarity=0.162 Sum_probs=107.3
Q ss_pred ccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh--------hhhh
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC--------MSRV 311 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~--------~~~~ 311 (452)
++|+++|++|+|||||++++.+.... ....++++.++....+.. + ...+.+|||+|...+.. ....
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~ 76 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI---G--GIPVRLIDTAGIRETEDEIEKIGIERARE 76 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe---C--CEEEEEEECCCcCCCcchHHHHHHHHHHH
Confidence 57999999999999999999986542 344456666655545444 3 46788999999765432 1234
Q ss_pred hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecC
Q psy14768 312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSS 391 (452)
Q Consensus 312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSA 391 (452)
++.++|++++|+|++++.+..+...+.. ...+|+++|+||+|+.+.... .....+ .+++++||
T Consensus 77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~----------~~~~~vi~v~nK~D~~~~~~~------~~~~~~-~~~~~~Sa 139 (157)
T cd04164 77 AIEEADLVLFVIDASRGLDEEDLEILEL----------PADKPIIVVLNKSDLLPDSEL------LSLLAG-KPIIAISA 139 (157)
T ss_pred HHhhCCEEEEEEECCCCCCHHHHHHHHh----------hcCCCEEEEEEchhcCCcccc------ccccCC-CceEEEEC
Confidence 6789999999999999888877765443 134899999999999762211 222223 34899999
Q ss_pred CCCccHHHHHHHHHHHH
Q psy14768 392 KEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 392 ktg~nv~~lf~~i~~~i 408 (452)
+++.|++++++++...+
T Consensus 140 ~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 140 KTGEGLDELKEALLELA 156 (157)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 99999999999987753
No 173
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.73 E-value=1.7e-17 Score=166.57 Aligned_cols=152 Identities=16% Similarity=0.108 Sum_probs=118.8
Q ss_pred ccEEEeeecccCCcceeeeccc-cccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch-----hh----hhhh
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQ-NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR-----YI----CMSR 310 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~-~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~-----~~----~~~~ 310 (452)
..|+|+|+||||||||.|||++ +..+++..|++++|.......+ .+. .|.++||+|.+. +. ....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~---~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~ 78 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEW---LGR--EFILIDTGGLDDGDEDELQELIREQAL 78 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEE---cCc--eEEEEECCCCCcCCchHHHHHHHHHHH
Confidence 5699999999999999999998 4566778899999988888877 444 477889999763 22 1224
Q ss_pred hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEec
Q psy14768 311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVS 390 (452)
Q Consensus 311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evS 390 (452)
..+..||++|||+|...+.+-+|-........ .++|+|||+||+|-. ..+....-.-.+|+...+.+|
T Consensus 79 ~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~--------~~kpviLvvNK~D~~----~~e~~~~efyslG~g~~~~IS 146 (444)
T COG1160 79 IAIEEADVILFVVDGREGITPADEEIAKILRR--------SKKPVILVVNKIDNL----KAEELAYEFYSLGFGEPVPIS 146 (444)
T ss_pred HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--------cCCCEEEEEEcccCc----hhhhhHHHHHhcCCCCceEee
Confidence 46899999999999999887776544322222 349999999999964 234444455567877789999
Q ss_pred CCCCccHHHHHHHHHHHHH
Q psy14768 391 SKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 391 Aktg~nv~~lf~~i~~~i~ 409 (452)
|..|.|+.+|++++++.+-
T Consensus 147 A~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 147 AEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred hhhccCHHHHHHHHHhhcC
Confidence 9999999999999999873
No 174
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.72 E-value=2.4e-16 Score=171.89 Aligned_cols=156 Identities=15% Similarity=0.196 Sum_probs=116.9
Q ss_pred CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS 316 (452)
Q Consensus 237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a 316 (452)
......|+++|..++|||||+++|.+..+.....++++.+.....+.+ + ...+.||||||++.|..++..++..+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~---~--~~~ItfiDTPGhe~F~~m~~rga~~a 361 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVET---N--GGKITFLDTPGHEAFTAMRARGAQVT 361 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEE---C--CEEEEEEECCCCccchhHHHhhhhhC
Confidence 345688999999999999999999887777666677777666666655 4 35688999999999999999899999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHH-------HHHHcC-CCEEEE
Q psy14768 317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEA-------VCHQYN-FMSWIE 388 (452)
Q Consensus 317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~-------~~~~~~-~~~~~e 388 (452)
|++|||||++++..-+..+.|... ...++|+|||+||+|+.+. ..+.+.. +...++ ..+|++
T Consensus 362 DiaILVVdAddGv~~qT~e~i~~a--------~~~~vPiIVviNKiDl~~a--~~e~V~~eL~~~~~~~e~~g~~vp~vp 431 (787)
T PRK05306 362 DIVVLVVAADDGVMPQTIEAINHA--------KAAGVPIIVAINKIDKPGA--NPDRVKQELSEYGLVPEEWGGDTIFVP 431 (787)
T ss_pred CEEEEEEECCCCCCHhHHHHHHHH--------HhcCCcEEEEEECcccccc--CHHHHHHHHHHhcccHHHhCCCceEEE
Confidence 999999999986543443333221 1235899999999999641 1222221 122232 245999
Q ss_pred ecCCCCccHHHHHHHHHHH
Q psy14768 389 VSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 389 vSAktg~nv~~lf~~i~~~ 407 (452)
+||++|.||+++|+++...
T Consensus 432 vSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 432 VSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred EeCCCCCCchHHHHhhhhh
Confidence 9999999999999998763
No 175
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.72 E-value=2.8e-17 Score=165.52 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=118.9
Q ss_pred CcccEEEeeecccCCcceeeeccc-cccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhh--------
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQ-NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMS-------- 309 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~-~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~-------- 309 (452)
..++++|+|+||||||||+|.|++ ++-+++..+++++|+....+.+ .++.+.++||||.+.-....
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i-----~G~pv~l~DTAGiRet~d~VE~iGIeRs 290 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINL-----NGIPVRLVDTAGIRETDDVVERIGIERA 290 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEE-----CCEEEEEEecCCcccCccHHHHHHHHHH
Confidence 468999999999999999999998 7788999999999999999988 45678888999987543222
Q ss_pred hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEe
Q psy14768 310 RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEV 389 (452)
Q Consensus 310 ~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~ev 389 (452)
...+++||.+++|+|++.+.+-++...+. . ...++|+++|.||.||...... ..+ +-..-.+++.+
T Consensus 291 ~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~--------~~~~~~~i~v~NK~DL~~~~~~----~~~-~~~~~~~~i~i 356 (454)
T COG0486 291 KKAIEEADLVLFVLDASQPLDKEDLALIE-L--------LPKKKPIIVVLNKADLVSKIEL----ESE-KLANGDAIISI 356 (454)
T ss_pred HHHHHhCCEEEEEEeCCCCCchhhHHHHH-h--------cccCCCEEEEEechhccccccc----chh-hccCCCceEEE
Confidence 23588999999999999875555543322 1 2356999999999999862211 111 11122248999
Q ss_pred cCCCCccHHHHHHHHHHHHHHh
Q psy14768 390 SSKEHLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~~i~~~ 411 (452)
||++|.|++.+.+.+.+.+...
T Consensus 357 Sa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 357 SAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EecCccCHHHHHHHHHHHHhhc
Confidence 9999999999999998888776
No 176
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.72 E-value=5e-17 Score=168.73 Aligned_cols=152 Identities=17% Similarity=0.145 Sum_probs=113.0
Q ss_pred cEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc--------chhhhhhhhh
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ--------DRYICMSRVY 312 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~--------e~~~~~~~~~ 312 (452)
+|+++|++|||||||+|++++.+. .....++++.+.....+.+ ++ ..+.+|||+|. +.+......+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~---~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW---GG--REFILIDTGGIEEDDDGLDKQIREQAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEE---CC--eEEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence 589999999999999999998653 3455577777776666655 44 45889999996 3344455667
Q ss_pred hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCC
Q psy14768 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSK 392 (452)
Q Consensus 313 i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAk 392 (452)
++.+|++|+|+|+.++.+..+... ...+.+. ++|+++|+||+|+.+.... . .....+++..++++||+
T Consensus 76 ~~~ad~vl~vvD~~~~~~~~d~~i-~~~l~~~-------~~piilVvNK~D~~~~~~~---~-~~~~~lg~~~~~~vSa~ 143 (429)
T TIGR03594 76 IEEADVILFVVDGREGLTPEDEEI-AKWLRKS-------GKPVILVANKIDGKKEDAV---A-AEFYSLGFGEPIPISAE 143 (429)
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHH-HHHHHHh-------CCCEEEEEECccCCccccc---H-HHHHhcCCCCeEEEeCC
Confidence 899999999999998776665432 2233322 4899999999998752211 1 22346777668999999
Q ss_pred CCccHHHHHHHHHHHHHH
Q psy14768 393 EHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 393 tg~nv~~lf~~i~~~i~~ 410 (452)
+|.|+.++++++.+.+..
T Consensus 144 ~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 144 HGRGIGDLLDAILELLPE 161 (429)
T ss_pred cCCChHHHHHHHHHhcCc
Confidence 999999999999887643
No 177
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.72 E-value=1.6e-17 Score=140.92 Aligned_cols=117 Identities=26% Similarity=0.480 Sum_probs=85.3
Q ss_pred cEEEeeecccCCcceeeeccccccc--cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFL--DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~--~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
||+|+|.+|+|||||+++|++..+. ..+....+..+....... ......+.+||++|++.+...+..++.++|++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 77 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVV---DGDRQSLQFWDFGGQEEFYSQHQFFLKKADAV 77 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEE---TTEEEEEEEEEESSSHCHHCTSHHHHHHSCEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEe---cCCceEEEEEecCccceecccccchhhcCcEE
Confidence 6899999999999999999987665 122233333333334444 66666799999999998888877789999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCC
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCD 363 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~D 363 (452)
|+|||++++.||+.+..++..+..... ...++|++||+||.|
T Consensus 78 ilv~D~s~~~s~~~~~~~~~~l~~~~~--~~~~~piilv~nK~D 119 (119)
T PF08477_consen 78 ILVYDLSDPESLEYLSQLLKWLKNIRK--RDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEECCGHHHHHHHHHHHHHHHHHHH--HSSCSEEEEEEE-TC
T ss_pred EEEEcCCChHHHHHHHHHHHHHHHHHc--cCCCCCEEEEEeccC
Confidence 999999999999998655443333310 135599999999998
No 178
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=4.4e-17 Score=169.48 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=109.4
Q ss_pred ccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch--------hhhhhhh
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR--------YICMSRV 311 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~--------~~~~~~~ 311 (452)
.+|+++|++|||||||+|+|++.+. .....++++.+.....+.+ ++ ..+.+|||+|++. +......
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~---~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW---LG--REFILIDTGGIEPDDDGFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEE---CC--cEEEEEECCCCCCcchhHHHHHHHHHHH
Confidence 5799999999999999999998653 3445567777776666666 44 6789999999876 2223345
Q ss_pred hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecC
Q psy14768 312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSS 391 (452)
Q Consensus 312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSA 391 (452)
++..+|++|+|+|++++.+..+... ...+.. .++|+++|+||+|+.+. .+...++ ..+++..++++||
T Consensus 77 ~~~~ad~il~vvd~~~~~~~~~~~~-~~~l~~-------~~~piilv~NK~D~~~~---~~~~~~~-~~lg~~~~~~iSa 144 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLTPADEEI-AKILRK-------SNKPVILVVNKVDGPDE---EADAYEF-YSLGLGEPYPISA 144 (435)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHH-HHHHHH-------cCCcEEEEEECccCccc---hhhHHHH-HhcCCCCCEEEEe
Confidence 7899999999999998766544322 112222 24899999999997542 1222233 3556655799999
Q ss_pred CCCccHHHHHHHHHH
Q psy14768 392 KEHLMIEDSMNFLVD 406 (452)
Q Consensus 392 ktg~nv~~lf~~i~~ 406 (452)
++|.|+.++|+.+..
T Consensus 145 ~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 145 EHGRGIGDLLDAILE 159 (435)
T ss_pred eCCCCHHHHHHHHHh
Confidence 999999999999987
No 179
>KOG0096|consensus
Probab=99.72 E-value=1.4e-17 Score=147.68 Aligned_cols=167 Identities=26% Similarity=0.506 Sum_probs=142.2
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++++++|+.+.||++++++.+...|...+.+|+|.+.....+.. +...+.|..|||+|||++..++..+|-++.
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~t---n~g~irf~~wdtagqEk~gglrdgyyI~~q 84 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDT---NRGQIRFNVWDTAGQEKKGGLRDGYYIQGQ 84 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeec---ccCcEEEEeeecccceeecccccccEEecc
Confidence 45789999999999999999999999999999999999887666555 555799999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
++|++||++...++.++..|...+.+.+ .++||+++|||.|...+++- ...-.+.++.++. |+++||+++.|.
T Consensus 85 cAiimFdVtsr~t~~n~~rwhrd~~rv~-----~NiPiv~cGNKvDi~~r~~k-~k~v~~~rkknl~-y~~iSaksn~Nf 157 (216)
T KOG0096|consen 85 CAIIMFDVTSRFTYKNVPRWHRDLVRVR-----ENIPIVLCGNKVDIKARKVK-AKPVSFHRKKNLQ-YYEISAKSNYNF 157 (216)
T ss_pred eeEEEeeeeehhhhhcchHHHHHHHHHh-----cCCCeeeeccceeccccccc-cccceeeecccce-eEEeeccccccc
Confidence 9999999999999999999999988774 56999999999998654321 1222344444555 999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy14768 398 EDSMNFLVDRIICSKRM 414 (452)
Q Consensus 398 ~~lf~~i~~~i~~~~~~ 414 (452)
+.-|.++++.+......
T Consensus 158 ekPFl~LarKl~G~p~L 174 (216)
T KOG0096|consen 158 ERPFLWLARKLTGDPSL 174 (216)
T ss_pred ccchHHHhhhhcCCCCe
Confidence 99999999998776553
No 180
>KOG3883|consensus
Probab=99.71 E-value=5.5e-17 Score=138.91 Aligned_cols=167 Identities=19% Similarity=0.331 Sum_probs=138.2
Q ss_pred cccEEEeeecccCCcceeeeccccc--cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh-hhhhhhhhcCC
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNK--FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY-ICMSRVYYQNS 316 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~--~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~-~~~~~~~i~~a 316 (452)
..|++++|..+||||+++.+++-.. ....+.+|+.. ++...+... ++-.-++.|+||+|...+ ..+..+|+..+
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiED-iY~~svet~--rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIED-IYVASVETD--RGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchhh-heeEeeecC--CChhheEEEeecccccCchhhhhHhHhccC
Confidence 4789999999999999999988533 22455666664 433344331 455678999999998777 56668899999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768 317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL 395 (452)
Q Consensus 317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~ 395 (452)
|+++||||..+++||+.++.+-..|..+. ....+||++++||+|+.+ +++..+.+..|+..-... .++++|.+..
T Consensus 86 DafVLVYs~~d~eSf~rv~llKk~Idk~K---dKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvk-l~eVta~dR~ 161 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVELLKKEIDKHK---DKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVK-LWEVTAMDRP 161 (198)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhhcc---ccccccEEEEechhhcccchhcCHHHHHHHHhhhhee-EEEEEeccch
Confidence 99999999999999999998888887763 567899999999999988 889999999999998887 9999999999
Q ss_pred cHHHHHHHHHHHHHHhhh
Q psy14768 396 MIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 396 nv~~lf~~i~~~i~~~~~ 413 (452)
.+-+-|..++..+.....
T Consensus 162 sL~epf~~l~~rl~~pqs 179 (198)
T KOG3883|consen 162 SLYEPFTYLASRLHQPQS 179 (198)
T ss_pred hhhhHHHHHHHhccCCcc
Confidence 999999999988765544
No 181
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.71 E-value=5.8e-17 Score=148.11 Aligned_cols=147 Identities=18% Similarity=0.220 Sum_probs=98.3
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc----------chhhh
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ----------DRYIC 307 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~----------e~~~~ 307 (452)
....+|+++|.+|+|||||+|++++..+...+.++.+.......+.. ++ .+.+|||+|. +.+..
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~---~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---ND---GFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---CC---cEEEEeCCCCccccCChhHHHHHHH
Confidence 34689999999999999999999987644444344332222222222 22 5889999994 23444
Q ss_pred hhhhhhcC---CCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHHHc
Q psy14768 308 MSRVYYQN---SDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCHQY 381 (452)
Q Consensus 308 ~~~~~i~~---ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~~~ 381 (452)
+...+++. +|++|+|+|++++.+..+...+ ..+.. .++|+++|+||+|+.+ .+...+++++++...
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~-~~~~~-------~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~ 161 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDLEML-EWLRE-------RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD 161 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHHHHH-HHHHH-------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc
Confidence 44456554 5899999999987777666433 33322 2489999999999975 222344555555555
Q ss_pred CC-CEEEEecCCCCccHH
Q psy14768 382 NF-MSWIEVSSKEHLMIE 398 (452)
Q Consensus 382 ~~-~~~~evSAktg~nv~ 398 (452)
+. ..++++||++|+|++
T Consensus 162 ~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 162 ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCCceEEEECCCCCCCC
Confidence 32 258999999999873
No 182
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.71 E-value=9.7e-17 Score=173.43 Aligned_cols=160 Identities=13% Similarity=0.176 Sum_probs=118.1
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
.....|+++|..++|||||+++|....+.....++++.++....+.+. +++....+.||||||++.|..++..++..+|
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~-~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFE-YKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEE-ecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 456789999999999999999999877766666666655544443331 1445688999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHH-------HHcC-CCEEEEe
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVC-------HQYN-FMSWIEV 389 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~-------~~~~-~~~~~ev 389 (452)
++|||||++++...+..+.|.. +. ..++|+|||+||+|+... ..+.+.+.+ ..++ ..+++++
T Consensus 321 iaILVVDA~dGv~~QT~E~I~~-~k-------~~~iPiIVViNKiDl~~~--~~e~v~~eL~~~~ll~e~~g~~vpvv~V 390 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEAINY-IQ-------AANVPIIVAINKIDKANA--NTERIKQQLAKYNLIPEKWGGDTPMIPI 390 (742)
T ss_pred EEEEEEECcCCCChhhHHHHHH-HH-------hcCceEEEEEECCCcccc--CHHHHHHHHHHhccchHhhCCCceEEEE
Confidence 9999999998755444443332 22 235899999999998641 222222222 2222 3469999
Q ss_pred cCCCCccHHHHHHHHHHHH
Q psy14768 390 SSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~~i 408 (452)
||++|.||+++|++++...
T Consensus 391 SAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 391 SASQGTNIDKLLETILLLA 409 (742)
T ss_pred ECCCCCCHHHHHHhhhhhh
Confidence 9999999999999987763
No 183
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.70 E-value=1.5e-16 Score=146.96 Aligned_cols=156 Identities=18% Similarity=0.227 Sum_probs=105.0
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc----------chhhhh
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ----------DRYICM 308 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~----------e~~~~~ 308 (452)
..++|+++|.+|+|||||++++++..+...+.++.+......... ....+.||||+|. +.+..+
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~------~~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE------VNDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe------cCCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 458899999999999999999998766555555544322211111 1257899999994 344445
Q ss_pred hhhhhcCC---CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHHHcC
Q psy14768 309 SRVYYQNS---DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCHQYN 382 (452)
Q Consensus 309 ~~~~i~~a---d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~~~~ 382 (452)
...+++.+ +++++|+|++++.+..+... ...+.. .++|+++|+||+|+.+ .+...+++..+.....
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i-~~~l~~-------~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~ 168 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDLQM-IEWLKE-------YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGD 168 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHHHH-HHHHHH-------cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcC
Confidence 45555544 68889999988765544321 222221 2489999999999975 1222233444444443
Q ss_pred CCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768 383 FMSWIEVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 383 ~~~~~evSAktg~nv~~lf~~i~~~i~ 409 (452)
. .++++||+++.|++++|+.+.+.+.
T Consensus 169 ~-~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 169 D-EVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred C-ceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4 4899999999999999999887653
No 184
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.70 E-value=1.1e-16 Score=171.10 Aligned_cols=158 Identities=15% Similarity=0.189 Sum_probs=118.2
Q ss_pred ccEEEeeecccCCcceeeeccc---cccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQ---NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~---~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
+.|+++|.+|+|||||+++|.+ +.+..++..+++.++....+.. ++ ..+.||||||+++|...+..++.++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~---~~--~~v~~iDtPGhe~f~~~~~~g~~~aD 75 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL---PD--YRLGFIDVPGHEKFISNAIAGGGGID 75 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe---CC--EEEEEEECCCHHHHHHHHHhhhccCC
Confidence 3589999999999999999986 3455566678888877666655 44 77899999999999988888899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCC-C--cccHHHHHHHHHHcC---CCEEEEec
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPD-R--QVEINEIEAVCHQYN---FMSWIEVS 390 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~-~--~~~~e~~~~~~~~~~---~~~~~evS 390 (452)
++|+|+|++++...+..+.+ ..+.. .++| ++||+||+|+.+ . ....+++.+++...+ ..+++++|
T Consensus 76 ~aILVVDa~~G~~~qT~ehl-~il~~-------lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vS 147 (581)
T TIGR00475 76 AALLVVDADEGVMTQTGEHL-AVLDL-------LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTS 147 (581)
T ss_pred EEEEEEECCCCCcHHHHHHH-HHHHH-------cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEe
Confidence 99999999985333332221 22222 2367 999999999976 2 123445666666653 24599999
Q ss_pred CCCCccHHHHHHHHHHHHHHh
Q psy14768 391 SKEHLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 391 Aktg~nv~~lf~~i~~~i~~~ 411 (452)
|++|.|+++++..+...+...
T Consensus 148 A~tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 148 AKTGQGIGELKKELKNLLESL 168 (581)
T ss_pred CCCCCCchhHHHHHHHHHHhC
Confidence 999999999999887765543
No 185
>COG1159 Era GTPase [General function prediction only]
Probab=99.70 E-value=9.2e-17 Score=153.42 Aligned_cols=161 Identities=14% Similarity=0.144 Sum_probs=120.3
Q ss_pred cccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh-----hhh---h
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI-----CMS---R 310 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~-----~~~---~ 310 (452)
..-|+|+|+||||||||+|++++.. .+.+..+.+++....-..+. ...+++|+||||..+-. .|. .
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-----~~~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-----DNAQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-----CCceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 3468999999999999999999954 55777888887776666544 36788999999954321 222 3
Q ss_pred hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcc-cHHHHHHHHHHcCCCEEEEe
Q psy14768 311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQV-EINEIEAVCHQYNFMSWIEV 389 (452)
Q Consensus 311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~-~~e~~~~~~~~~~~~~~~ev 389 (452)
..+..+|+++||+|++++..-.+ +..++.+.. .+.|+++++||.|...... .....+.+...+.+...+.+
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d-~~il~~lk~-------~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpi 152 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGD-EFILEQLKK-------TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPI 152 (298)
T ss_pred HHhccCcEEEEEEeccccCCccH-HHHHHHHhh-------cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEe
Confidence 46889999999999998654433 223344433 2489999999999887332 34556666677778788999
Q ss_pred cCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 390 SSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
||++|.|++.+.+.+...+-+...
T Consensus 153 SA~~g~n~~~L~~~i~~~Lpeg~~ 176 (298)
T COG1159 153 SALKGDNVDTLLEIIKEYLPEGPW 176 (298)
T ss_pred eccccCCHHHHHHHHHHhCCCCCC
Confidence 999999999999999887766544
No 186
>PRK00089 era GTPase Era; Reviewed
Probab=99.69 E-value=2e-16 Score=156.01 Aligned_cols=158 Identities=13% Similarity=0.170 Sum_probs=110.9
Q ss_pred cccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh--------hhhh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI--------CMSR 310 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~--------~~~~ 310 (452)
...|+++|++|+|||||+|+++++.+. .+..+.++.+....... ....++.+|||+|..... ....
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~-----~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~ 79 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVT-----EDDAQIIFVDTPGIHKPKRALNRAMNKAAW 79 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEE-----cCCceEEEEECCCCCCchhHHHHHHHHHHH
Confidence 356899999999999999999987653 34444444443332222 233689999999964322 2223
Q ss_pred hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEe
Q psy14768 311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEV 389 (452)
Q Consensus 311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~ev 389 (452)
..+.++|++++|+|+++..+..+ ..+...+.. .+.|+++|+||+|+.. .....+....+.+..++..++.+
T Consensus 80 ~~~~~~D~il~vvd~~~~~~~~~-~~i~~~l~~-------~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~i 151 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIGPGD-EFILEKLKK-------VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPI 151 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCChhH-HHHHHHHhh-------cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEe
Confidence 46789999999999998433222 222333332 2489999999999984 34445566667776777779999
Q ss_pred cCCCCccHHHHHHHHHHHHHH
Q psy14768 390 SSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~~i~~ 410 (452)
||+++.|++++++++...+..
T Consensus 152 SA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 152 SALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred cCCCCCCHHHHHHHHHHhCCC
Confidence 999999999999999887643
No 187
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.69 E-value=2.3e-16 Score=173.08 Aligned_cols=154 Identities=14% Similarity=0.109 Sum_probs=110.7
Q ss_pred cccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch--------hhhhhh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR--------YICMSR 310 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~--------~~~~~~ 310 (452)
..+|+|+|++|||||||+|++++.+. +....++++.+.......+ + ...+.+|||+|++. +.....
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~---~--~~~~~liDT~G~~~~~~~~~~~~~~~~~ 349 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEW---A--GTDFKLVDTGGWEADVEGIDSAIASQAQ 349 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEE---C--CEEEEEEeCCCcCCCCccHHHHHHHHHH
Confidence 36899999999999999999998543 4455677777766555544 3 35688999999763 223345
Q ss_pred hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEec
Q psy14768 311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVS 390 (452)
Q Consensus 311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evS 390 (452)
.+++.+|++|+|+|++++.+..+. .|...+.. .++|+|+|+||+|+.+.. ....++ ..+++...+++|
T Consensus 350 ~~~~~aD~iL~VvDa~~~~~~~d~-~i~~~Lr~-------~~~pvIlV~NK~D~~~~~---~~~~~~-~~lg~~~~~~iS 417 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGLTSTDE-RIVRMLRR-------AGKPVVLAVNKIDDQASE---YDAAEF-WKLGLGEPYPIS 417 (712)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHh-------cCCCEEEEEECcccccch---hhHHHH-HHcCCCCeEEEE
Confidence 578999999999999876544432 34444433 359999999999986421 112222 234444468999
Q ss_pred CCCCccHHHHHHHHHHHHHH
Q psy14768 391 SKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 391 Aktg~nv~~lf~~i~~~i~~ 410 (452)
|++|.||+++|+++++.+..
T Consensus 418 A~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 418 AMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCCCCchHHHHHHHHhccc
Confidence 99999999999999988744
No 188
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.68 E-value=1.3e-16 Score=170.66 Aligned_cols=146 Identities=18% Similarity=0.187 Sum_probs=110.8
Q ss_pred eecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhh------hhhhh--cCCCE
Q psy14768 247 GDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICM------SRVYY--QNSDG 318 (452)
Q Consensus 247 G~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~------~~~~i--~~ad~ 318 (452)
|++|||||||+|++.+..+...+.++++.+.....+.+ ++ ..+++|||||+..+... ...++ ..+|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~---~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDv 75 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGF---QG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDL 75 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEE---CC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCE
Confidence 88999999999999998777777788888887776666 44 45789999999876543 23343 47999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
+++|+|+++.+. .+ .+..++.+ .++|+++|+||+|+.+......+.+++.+.++.. ++++||++|.|++
T Consensus 76 vI~VvDat~ler--~l-~l~~ql~~-------~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~p-vv~tSA~tg~Gi~ 144 (591)
T TIGR00437 76 VVNVVDASNLER--NL-YLTLQLLE-------LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVP-VVPTSATEGRGIE 144 (591)
T ss_pred EEEEecCCcchh--hH-HHHHHHHh-------cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCC-EEEEECCCCCCHH
Confidence 999999987432 12 22222221 3589999999999975222234567888888876 9999999999999
Q ss_pred HHHHHHHHHH
Q psy14768 399 DSMNFLVDRI 408 (452)
Q Consensus 399 ~lf~~i~~~i 408 (452)
++|+++.+..
T Consensus 145 eL~~~i~~~~ 154 (591)
T TIGR00437 145 RLKDAIRKAI 154 (591)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 189
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.68 E-value=1.4e-16 Score=146.89 Aligned_cols=158 Identities=18% Similarity=0.232 Sum_probs=112.4
Q ss_pred cccEEEeeecccCCcceeeecccccccc------------------ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLD------------------NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~------------------~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG 301 (452)
..+|+++|+.++|||||+++|+...... +.....+.+.....+.. ......+.|+||||
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~---~~~~~~i~~iDtPG 79 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEK---NENNRKITLIDTPG 79 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEB---TESSEEEEEEEESS
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccc---cccccceeeccccc
Confidence 3679999999999999999998532111 11123334444444431 24567788999999
Q ss_pred cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--CcccHHHHH-HHH
Q psy14768 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--RQVEINEIE-AVC 378 (452)
Q Consensus 302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--~~~~~e~~~-~~~ 378 (452)
+..|...+...+..+|++|+|+|+.++...+..+.+....... +|+++|+||+|+.+ .....+++. .+.
T Consensus 80 ~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~--------~p~ivvlNK~D~~~~~~~~~~~~~~~~l~ 151 (188)
T PF00009_consen 80 HEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELG--------IPIIVVLNKMDLIEKELEEIIEEIKEKLL 151 (188)
T ss_dssp SHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT---------SEEEEEETCTSSHHHHHHHHHHHHHHHH
T ss_pred ccceeecccceecccccceeeeecccccccccccccccccccc--------cceEEeeeeccchhhhHHHHHHHHHHHhc
Confidence 9999888888899999999999999887766655554443433 88999999999974 111122222 444
Q ss_pred HHcC-----CCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768 379 HQYN-----FMSWIEVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 379 ~~~~-----~~~~~evSAktg~nv~~lf~~i~~~i 408 (452)
+..+ ..+++++||++|.|+.++++.+.+.+
T Consensus 152 ~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 152 KEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 4443 34689999999999999999998764
No 190
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.68 E-value=3.9e-16 Score=138.73 Aligned_cols=155 Identities=14% Similarity=0.124 Sum_probs=105.3
Q ss_pred cccEEEeeecccCCcceeeecccccccc-ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh--------hhh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLD-NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC--------MSR 310 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~-~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~--------~~~ 310 (452)
..+|+++|.+|+|||||+|++++..+.. ...+.++....... . ....+.+.+|||+|...... ...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 77 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI--Y---TDDDAQIIFVDTPGIHKPKKKLGERMVKAAW 77 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE--E---EcCCeEEEEEECCCCCcchHHHHHHHHHHHH
Confidence 4689999999999999999999865432 22222222221211 1 33456789999999754322 234
Q ss_pred hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEe
Q psy14768 311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEV 389 (452)
Q Consensus 311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~ev 389 (452)
..+..+|++++|+|++++.+... ..+...+... +.|+++|+||+|+.. .....+....+....+..+++++
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~-~~~~~~~~~~-------~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGD-EFILELLKKS-------KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPI 149 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchH-HHHHHHHHHh-------CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEE
Confidence 46889999999999998733222 2233333332 489999999999974 33334445555555555668999
Q ss_pred cCCCCccHHHHHHHHHHH
Q psy14768 390 SSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~~ 407 (452)
|++++.+++++|+.+.+.
T Consensus 150 s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 150 SALKGENVDELLEEIVKY 167 (168)
T ss_pred EeccCCChHHHHHHHHhh
Confidence 999999999999998764
No 191
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.67 E-value=4.6e-16 Score=165.57 Aligned_cols=162 Identities=12% Similarity=0.074 Sum_probs=107.0
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecC-------------CeeEEEEEEecCCcchhh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-------------GRPVKLQIWDIAGQDRYI 306 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~-------------~~~~~l~l~DtaG~e~~~ 306 (452)
..-|+++|++|+|||||+|+|.+..+......+++.+.....+...... .+...+.||||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 3568999999999999999999887765554545443332222220000 011238899999999999
Q ss_pred hhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cc------------ccHHH
Q psy14768 307 CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQ------------VEINE 373 (452)
Q Consensus 307 ~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~------------~~~e~ 373 (452)
.++..+++.+|++|||||++++...+..+.+. .+.. .++|++||+||+|+.+ .. ...+.
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-~l~~-------~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN-ILRM-------YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-HHHH-------cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 99999999999999999999854333332221 1221 2589999999999963 10 00000
Q ss_pred H------------HHHHH-------------HcCCCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768 374 I------------EAVCH-------------QYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 374 ~------------~~~~~-------------~~~~~~~~evSAktg~nv~~lf~~i~~~i~ 409 (452)
+ .++.+ ..+..+++.+||++|+|+++++.++.....
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 0 01111 112346899999999999999998865543
No 192
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.67 E-value=4.9e-16 Score=166.48 Aligned_cols=161 Identities=16% Similarity=0.200 Sum_probs=115.9
Q ss_pred ccEEEeeecccCCcceeeeccccc-cc------ccc--------CCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNK-FL------DNY--------KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY 305 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~-~~------~~~--------~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~ 305 (452)
-+++|+|..++|||||+.+|+... .+ ..+ ..+++.......+.+...+++.+.+.||||||++.|
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 478999999999999999998521 11 000 112222222223333112456789999999999999
Q ss_pred hhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCC-
Q psy14768 306 ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFM- 384 (452)
Q Consensus 306 ~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~- 384 (452)
...+..+++.+|++|+|+|++++...+....|...... ++|+++|+||+|+.+.. ..+...++.+.+++.
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~--------~lpiIvViNKiDl~~a~-~~~v~~ei~~~lg~~~ 158 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN--------DLEIIPVLNKIDLPAAD-PERVKQEIEDVIGIDA 158 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC--------CCCEEEEEECCCCCccc-HHHHHHHHHHHhCCCc
Confidence 98899999999999999999998888877777654433 48999999999986411 122334455555543
Q ss_pred -EEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768 385 -SWIEVSSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 385 -~~~evSAktg~nv~~lf~~i~~~i~~ 410 (452)
.++++||++|.|++++|+++.+.+-.
T Consensus 159 ~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 159 SDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 37999999999999999999887643
No 193
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.66 E-value=2.3e-16 Score=147.86 Aligned_cols=147 Identities=16% Similarity=0.185 Sum_probs=99.5
Q ss_pred cEEEeeecccCCcceeeecccc-ccccc------------------------------cCCcceeeeEEEEEEeeecCCe
Q psy14768 242 PILITGDSTVGKTSYVQGFVQN-KFLDN------------------------------YKNTVGVDFSTKLLSHKKYGGR 290 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~-~~~~~------------------------------~~~t~~~d~~~~~i~~~~~~~~ 290 (452)
+|+++|.+|+|||||+++|+.. ..+.. ...+++++.....+.. .
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-----~ 75 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-----P 75 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-----C
Confidence 5899999999999999999752 22221 1134444544444333 4
Q ss_pred eEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cc-
Q psy14768 291 PVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQ- 368 (452)
Q Consensus 291 ~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~- 368 (452)
...+.||||||+++|...+..+++.+|++|+|+|++++..-+....+. .+... ...++|+|+||+|+.+ ..
T Consensus 76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~-~~~~~------~~~~iIvviNK~D~~~~~~~ 148 (208)
T cd04166 76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSY-ILSLL------GIRHVVVAVNKMDLVDYSEE 148 (208)
T ss_pred CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHH-HHHHc------CCCcEEEEEEchhcccCCHH
Confidence 557889999999988766667789999999999999875444333222 22222 1245788999999874 11
Q ss_pred ---ccHHHHHHHHHHcCC--CEEEEecCCCCccHHHH
Q psy14768 369 ---VEINEIEAVCHQYNF--MSWIEVSSKEHLMIEDS 400 (452)
Q Consensus 369 ---~~~e~~~~~~~~~~~--~~~~evSAktg~nv~~l 400 (452)
...++++++...+++ .+++.+||++|.|+.+.
T Consensus 149 ~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 149 VFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 122345566667765 34899999999999753
No 194
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.66 E-value=4.9e-16 Score=145.11 Aligned_cols=110 Identities=13% Similarity=0.198 Sum_probs=76.3
Q ss_pred EEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCc--
Q psy14768 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK-SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQ-- 368 (452)
Q Consensus 292 ~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~-S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~-- 368 (452)
..+.||||+|++.|...+...+..+|++|+|+|++++. ..+....+ ..+... ...|++||+||+|+.+..
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l-~~~~~~------~~~~iiivvNK~Dl~~~~~~ 155 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL-AALEIM------GLKHIIIVQNKIDLVKEEQA 155 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH-HHHHHc------CCCcEEEEEEchhccCHHHH
Confidence 67899999999998877777888999999999999742 11222222 222222 225799999999997511
Q ss_pred -ccHHHHHHHHHHc--CCCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768 369 -VEINEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 369 -~~~e~~~~~~~~~--~~~~~~evSAktg~nv~~lf~~i~~~i 408 (452)
...+++++++... ...+++++||++|.|++++|+++...+
T Consensus 156 ~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 156 LENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 1223344444432 123489999999999999999998654
No 195
>KOG0071|consensus
Probab=99.65 E-value=8.6e-16 Score=129.79 Aligned_cols=157 Identities=24% Similarity=0.353 Sum_probs=122.5
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
.+++|+.+|-.++||||++.++.-+... ...||+|.++..++ + +.+.|.+||.+||++.+.+|.+||....+
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvGFnvetVt--y-----kN~kfNvwdvGGqd~iRplWrhYy~gtqg 87 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVT--Y-----KNVKFNVWDVGGQDKIRPLWRHYYTGTQG 87 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCc-ccccccceeEEEEE--e-----eeeEEeeeeccCchhhhHHHHhhccCCce
Confidence 4789999999999999999998865543 45689997766554 3 56889999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHH-----cCCCEEEEecCCC
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQ-----YNFMSWIEVSSKE 393 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~-----~~~~~~~evSAkt 393 (452)
+|||+|..+. ++++...+++.+..+.+.-...+++|.+||.|+.+ .....++..+.+- ..+. ...++|.+
T Consensus 88 lIFV~Dsa~~---dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~-A~~pqei~d~leLe~~r~~~W~-vqp~~a~~ 162 (180)
T KOG0071|consen 88 LIFVVDSADR---DRIEEARNELHRIINDREMRDAIILILANKQDLPD-AMKPQEIQDKLELERIRDRNWY-VQPSCALS 162 (180)
T ss_pred EEEEEeccch---hhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc-ccCHHHHHHHhccccccCCccE-eecccccc
Confidence 9999999876 55555556665555555667899999999999986 2334444444322 2222 47899999
Q ss_pred CccHHHHHHHHHHHH
Q psy14768 394 HLMIEDSMNFLVDRI 408 (452)
Q Consensus 394 g~nv~~lf~~i~~~i 408 (452)
|+++.+-|.|+.+..
T Consensus 163 gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 163 GDGLKEGLSWLSNNL 177 (180)
T ss_pred chhHHHHHHHHHhhc
Confidence 999999999998754
No 196
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.63 E-value=1.6e-15 Score=133.02 Aligned_cols=151 Identities=18% Similarity=0.115 Sum_probs=103.7
Q ss_pred EeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh-------hhhhhhcCC
Q psy14768 245 ITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC-------MSRVYYQNS 316 (452)
Q Consensus 245 ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~-------~~~~~i~~a 316 (452)
++|.+|+|||||++++.+.... .....+.+.+........ . ....+.+|||+|+..+.. ....++..+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~ 76 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWEL---G-PLGPVVLIDTPGIDEAGGLGREREELARRVLERA 76 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEe---c-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhC
Confidence 5899999999999999975444 444444444444443332 1 156789999999876543 334578999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHH---HHHHHHHcCCCEEEEecCCC
Q psy14768 317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINE---IEAVCHQYNFMSWIEVSSKE 393 (452)
Q Consensus 317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~---~~~~~~~~~~~~~~evSAkt 393 (452)
|++++|+|+++..+..... +...... .+.|+++|+||+|+.......+. ...........+++++||++
T Consensus 77 d~il~v~~~~~~~~~~~~~-~~~~~~~-------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 148 (163)
T cd00880 77 DLILFVVDADLRADEEEEK-LLELLRE-------RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALT 148 (163)
T ss_pred CEEEEEEeCCCCCCHHHHH-HHHHHHh-------cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeec
Confidence 9999999999988777665 3333322 35999999999998752111111 11222233344589999999
Q ss_pred CccHHHHHHHHHHH
Q psy14768 394 HLMIEDSMNFLVDR 407 (452)
Q Consensus 394 g~nv~~lf~~i~~~ 407 (452)
+.|+.++++++.+.
T Consensus 149 ~~~v~~l~~~l~~~ 162 (163)
T cd00880 149 GEGIDELREALIEA 162 (163)
T ss_pred cCCHHHHHHHHHhh
Confidence 99999999999865
No 197
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.63 E-value=2.3e-15 Score=140.52 Aligned_cols=120 Identities=21% Similarity=0.311 Sum_probs=89.5
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC-CEEE
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS-DGCI 320 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a-d~vI 320 (452)
+|+++|++++|||+|+++|....+...+.++ ..+........ .+....+.+|||||+.+++..+..+++.+ +++|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~---~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV 77 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNS---EGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIV 77 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeec---CCCCceEEEEECCCCHHHHHHHHHHHhccCCEEE
Confidence 5899999999999999999988776555333 33332222211 23457799999999999998888899999 9999
Q ss_pred EEEeCCCh-hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768 321 IMFDLTNR-KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366 (452)
Q Consensus 321 lV~D~t~~-~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~ 366 (452)
+|+|+++. .++.++..|+..+..... .....+|++||+||+|+..
T Consensus 78 ~VvD~~~~~~~~~~~~~~l~~il~~~~-~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 78 FVVDSATFQKNLKDVAEFLYDILTDLE-KVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred EEEECccchhHHHHHHHHHHHHHHHHh-hccCCCCEEEEecchhhcc
Confidence 99999997 677777666655533210 1235799999999999864
No 198
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.63 E-value=2.9e-15 Score=138.90 Aligned_cols=145 Identities=15% Similarity=0.153 Sum_probs=101.3
Q ss_pred cccEEEeeecccCCcceeeeccccc-------c---------ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNK-------F---------LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~-------~---------~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e 303 (452)
.++|+++|..++|||||+++|+... . ..+...+++.+..... + ..+...+.|+||||+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~--~---~~~~~~i~~iDtPG~~ 76 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVE--Y---ETANRHYAHVDCPGHA 76 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeE--e---cCCCeEEEEEECcCHH
Confidence 4689999999999999999997520 0 0111334444443333 2 4456678899999999
Q ss_pred hhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCC-C---cccHHHHHHHH
Q psy14768 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPD-R---QVEINEIEAVC 378 (452)
Q Consensus 304 ~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~-~---~~~~e~~~~~~ 378 (452)
.|.......+..+|++++|+|++++..-+..+.|.. +... ++| +|+|+||+|+.. . +...+++.+++
T Consensus 77 ~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~-~~~~-------~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l 148 (195)
T cd01884 77 DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLL-ARQV-------GVPYIVVFLNKADMVDDEELLELVEMEVRELL 148 (195)
T ss_pred HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHH-HHHc-------CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHH
Confidence 887777778899999999999998765555444443 3322 366 789999999964 1 12234566666
Q ss_pred HHcCC----CEEEEecCCCCccH
Q psy14768 379 HQYNF----MSWIEVSSKEHLMI 397 (452)
Q Consensus 379 ~~~~~----~~~~evSAktg~nv 397 (452)
.++++ .+++++||++|.|+
T Consensus 149 ~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 149 SKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHhcccccCCeEEEeeCccccCC
Confidence 66665 56999999999985
No 199
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.63 E-value=1e-15 Score=158.67 Aligned_cols=153 Identities=12% Similarity=0.169 Sum_probs=106.1
Q ss_pred CCcccEEEeeecccCCcceeeeccccc-cc------------------------------cccCCcceeeeEEEEEEeee
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNK-FL------------------------------DNYKNTVGVDFSTKLLSHKK 286 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~-~~------------------------------~~~~~t~~~d~~~~~i~~~~ 286 (452)
...++|+++|++++|||||+++|+... .+ .+...+++.+.....+.
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~--- 80 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE--- 80 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe---
Confidence 346889999999999999999998421 11 11245666666555543
Q ss_pred cCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCC--hhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCC
Q psy14768 287 YGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTN--RKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDL 364 (452)
Q Consensus 287 ~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~--~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl 364 (452)
.+.+.+.||||||++.|.......+..+|++|+|+|+++ ...-+....+ ..+... ...+++||+||+|+
T Consensus 81 --~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~-~~~~~~------~~~~iivviNK~Dl 151 (425)
T PRK12317 81 --TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHV-FLARTL------GINQLIVAINKMDA 151 (425)
T ss_pred --cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHH-HHHHHc------CCCeEEEEEEcccc
Confidence 356789999999999887666666789999999999998 3322222222 222221 22469999999999
Q ss_pred CC-Cc----ccHHHHHHHHHHcCC----CEEEEecCCCCccHHHHHH
Q psy14768 365 PD-RQ----VEINEIEAVCHQYNF----MSWIEVSSKEHLMIEDSMN 402 (452)
Q Consensus 365 ~~-~~----~~~e~~~~~~~~~~~----~~~~evSAktg~nv~~lf~ 402 (452)
.+ .. ...+++.+++...++ .+++++||++|.|+.+++.
T Consensus 152 ~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 152 VNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 74 11 223456666666664 4589999999999987553
No 200
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.62 E-value=2.8e-15 Score=142.90 Aligned_cols=156 Identities=18% Similarity=0.228 Sum_probs=103.1
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh-------hhhhhhhc
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI-------CMSRVYYQ 314 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~-------~~~~~~i~ 314 (452)
+++++|.+|+|||||++++.+........+.++.+.....+.+ ....+++|||||+.... .....+++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~-----~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~ 76 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY-----KGAKIQLLDLPGIIEGAADGKGRGRQVIAVAR 76 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE-----CCeEEEEEECCCcccccccchhHHHHHHHhhc
Confidence 6899999999999999999986543333344444444444444 34678899999975332 12245789
Q ss_pred CCCEEEEEEeCCChhh-HHHHHHHHHHH-----------------------------------------Hhhhh------
Q psy14768 315 NSDGCIIMFDLTNRKS-FESVVQWKHDL-----------------------------------------DSKCI------ 346 (452)
Q Consensus 315 ~ad~vIlV~D~t~~~S-~~~~~~~~~~i-----------------------------------------~~~~~------ 346 (452)
++|++++|+|+++... .+.+...++.. .++..
T Consensus 77 ~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~ 156 (233)
T cd01896 77 TADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVL 156 (233)
T ss_pred cCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEE
Confidence 9999999999987542 22222222110 00000
Q ss_pred --------------hcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768 347 --------------LDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 347 --------------~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i~ 409 (452)
......+|+++|+||+|+.. .++...++.. ..++++||+++.|++++|+.+.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~----~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 157 IREDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS----IEELDLLARQ---PNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred EccCCCHHHHHHHHhCCceEeeEEEEEECccCCC----HHHHHHHhcC---CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 00123479999999999864 4444455443 23899999999999999999988653
No 201
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.62 E-value=1.3e-15 Score=157.99 Aligned_cols=156 Identities=11% Similarity=0.119 Sum_probs=108.2
Q ss_pred CCCcccEEEeeecccCCcceeeecccc--ccc-----------------------------cccCCcceeeeEEEEEEee
Q psy14768 237 QIPTYPILITGDSTVGKTSYVQGFVQN--KFL-----------------------------DNYKNTVGVDFSTKLLSHK 285 (452)
Q Consensus 237 ~~~~~kI~ivG~~nvGKSSLin~l~~~--~~~-----------------------------~~~~~t~~~d~~~~~i~~~ 285 (452)
+...++|+++|..++|||||+++|+.. .+. .+...+++.+.....+.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~-- 81 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE-- 81 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc--
Confidence 345688999999999999999999842 111 11233566666555543
Q ss_pred ecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHH-HHHHHhhhhhcCCCCCcEEEEEECCCC
Q psy14768 286 KYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQW-KHDLDSKCILDNGAMLPCLLLASKCDL 364 (452)
Q Consensus 286 ~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~-~~~i~~~~~~~~~~~~piilV~NK~Dl 364 (452)
...+.+.||||+|+++|.......+..+|++|||||++++.++...+.+ ...+... ....+++||+||+|+
T Consensus 82 ---~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~-----~~~~~iIVviNK~Dl 153 (426)
T TIGR00483 82 ---TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART-----LGINQLIVAINKMDS 153 (426)
T ss_pred ---cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH-----cCCCeEEEEEEChhc
Confidence 3567899999999999877666678999999999999998543221111 1112222 123579999999999
Q ss_pred CC-Cc----ccHHHHHHHHHHcCC----CEEEEecCCCCccHHHHHH
Q psy14768 365 PD-RQ----VEINEIEAVCHQYNF----MSWIEVSSKEHLMIEDSMN 402 (452)
Q Consensus 365 ~~-~~----~~~e~~~~~~~~~~~----~~~~evSAktg~nv~~lf~ 402 (452)
.+ .+ ...+++.++++..++ .+|+++||++|.||.+++.
T Consensus 154 ~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 154 VNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred cCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 74 11 224566677777664 4589999999999987553
No 202
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.62 E-value=3.8e-15 Score=163.21 Aligned_cols=153 Identities=17% Similarity=0.159 Sum_probs=114.7
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhh----------h
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICM----------S 309 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~----------~ 309 (452)
.++|+++|.||+|||||+|++.+.+......++++.+.....+. .....+.+|||||+..+... .
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~-----~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~ 77 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFS-----TTDHQVTLVDLPGTYSLTTISSQTSLDEQIA 77 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEE-----cCceEEEEEECCCccccccccccccHHHHHH
Confidence 46899999999999999999998766666667777665554443 35567889999998765421 1
Q ss_pred hhhh--cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEE
Q psy14768 310 RVYY--QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWI 387 (452)
Q Consensus 310 ~~~i--~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~ 387 (452)
..++ ..+|++++|+|+++.... + .|..++.+. ++|+++|+||+|+.+......+.+++.+.++.. ++
T Consensus 78 ~~~l~~~~aD~vI~VvDat~ler~--l-~l~~ql~e~-------giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~p-Vv 146 (772)
T PRK09554 78 CHYILSGDADLLINVVDASNLERN--L-YLTLQLLEL-------GIPCIVALNMLDIAEKQNIRIDIDALSARLGCP-VI 146 (772)
T ss_pred HHHHhccCCCEEEEEecCCcchhh--H-HHHHHHHHc-------CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCC-EE
Confidence 2233 479999999999986432 2 233334332 499999999999876333345678888889986 99
Q ss_pred EecCCCCccHHHHHHHHHHHH
Q psy14768 388 EVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 388 evSAktg~nv~~lf~~i~~~i 408 (452)
.+||+++.|++++++.+.+..
T Consensus 147 piSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 147 PLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEEeecCCCHHHHHHHHHHhh
Confidence 999999999999999887764
No 203
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.61 E-value=7.3e-15 Score=130.93 Aligned_cols=152 Identities=19% Similarity=0.217 Sum_probs=100.0
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc----------hhhhhhhh
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD----------RYICMSRV 311 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e----------~~~~~~~~ 311 (452)
+|+++|.+|+|||||+|.+.+..+.....++.+.......+.. ++ .+.+|||+|.. .+..+...
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 74 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV---ND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEE 74 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc---cC---eEEEecCCCccccccCHHHHHHHHHHHHH
Confidence 4789999999999999999976666555555554433333332 22 78899999942 23444444
Q ss_pred hhc---CCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHH-HcCCC
Q psy14768 312 YYQ---NSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCH-QYNFM 384 (452)
Q Consensus 312 ~i~---~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~-~~~~~ 384 (452)
++. +.+++++++|.++..+..... ....+... +.|+++|+||+|+.. ............+ .....
T Consensus 75 ~~~~~~~~~~~~~v~d~~~~~~~~~~~-~~~~l~~~-------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~ 146 (170)
T cd01876 75 YLENRENLKGVVLLIDSRHGPTEIDLE-MLDWLEEL-------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDP 146 (170)
T ss_pred HHHhChhhhEEEEEEEcCcCCCHhHHH-HHHHHHHc-------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCC
Confidence 544 457899999998764333322 12222222 379999999999964 1112223333333 24445
Q ss_pred EEEEecCCCCccHHHHHHHHHHH
Q psy14768 385 SWIEVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 385 ~~~evSAktg~nv~~lf~~i~~~ 407 (452)
+++++||+++.++.++++++.+.
T Consensus 147 ~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 147 PIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred ceEEEecCCCCCHHHHHHHHHHh
Confidence 58999999999999999999865
No 204
>KOG0076|consensus
Probab=99.59 E-value=2.9e-15 Score=131.23 Aligned_cols=162 Identities=24% Similarity=0.367 Sum_probs=122.8
Q ss_pred CcccEEEeeecccCCcceeeecccc-------ccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhh
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQN-------KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRV 311 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~-------~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~ 311 (452)
..+.+.|+|..|+|||+|+.+.-.. --.....+|.|.+.....+ . ...+.+||..||+..+++|..
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-----~--~~~l~fwdlgGQe~lrSlw~~ 88 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-----C--NAPLSFWDLGGQESLRSLWKK 88 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-----c--cceeEEEEcCChHHHHHHHHH
Confidence 3578899999999999998765421 1123445677777766554 2 456889999999999999999
Q ss_pred hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHH---HcCC--CEE
Q psy14768 312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH---QYNF--MSW 386 (452)
Q Consensus 312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~---~~~~--~~~ 386 (452)
||..+|++|+++|+++++-|+........+...- ...++|+++.+||.|+.+ .....+++..+. ..+- .+|
T Consensus 89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E---~leg~p~L~lankqd~q~-~~~~~El~~~~~~~e~~~~rd~~~ 164 (197)
T KOG0076|consen 89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENE---KLEGAPVLVLANKQDLQN-AMEAAELDGVFGLAELIPRRDNPF 164 (197)
T ss_pred HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHH---HhcCCchhhhcchhhhhh-hhhHHHHHHHhhhhhhcCCccCcc
Confidence 9999999999999999998888876555554331 457799999999999875 222333333333 2221 238
Q ss_pred EEecCCCCccHHHHHHHHHHHHHHh
Q psy14768 387 IEVSSKEHLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 387 ~evSAktg~nv~~lf~~i~~~i~~~ 411 (452)
..|||.+|+||++...|+...+...
T Consensus 165 ~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 165 QPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccchhhhcccHHHHHHHHHHHHhhc
Confidence 9999999999999999999988766
No 205
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.59 E-value=1.2e-14 Score=156.09 Aligned_cols=155 Identities=15% Similarity=0.190 Sum_probs=110.2
Q ss_pred cEEEeeecccCCcceeeeccc---cccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 242 PILITGDSTVGKTSYVQGFVQ---NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~---~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
-|+++|..++|||||+++|.+ +++..+...+++.+.....+.. . ....+.||||||+++|...+...+..+|+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~---~-~g~~i~~IDtPGhe~fi~~m~~g~~~~D~ 77 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQ---P-DGRVLGFIDVPGHEKFLSNMLAGVGGIDH 77 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEec---C-CCcEEEEEECCCHHHHHHHHHHHhhcCCE
Confidence 478999999999999999986 4444555566666665444332 2 23357899999999998777778899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCCC---cccHHHHHHHHHHcCC--CEEEEecCC
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPDR---QVEINEIEAVCHQYNF--MSWIEVSSK 392 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~~---~~~~e~~~~~~~~~~~--~~~~evSAk 392 (452)
+++|+|++++..-+..+.+ ..+... ++| +|||+||+|+.+. ....+++.+++...++ .+++++||+
T Consensus 78 ~lLVVda~eg~~~qT~ehl-~il~~l-------gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~ 149 (614)
T PRK10512 78 ALLVVACDDGVMAQTREHL-AILQLT-------GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAAT 149 (614)
T ss_pred EEEEEECCCCCcHHHHHHH-HHHHHc-------CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCC
Confidence 9999999986443333222 222222 245 6899999999751 1223455566655553 458999999
Q ss_pred CCccHHHHHHHHHHHH
Q psy14768 393 EHLMIEDSMNFLVDRI 408 (452)
Q Consensus 393 tg~nv~~lf~~i~~~i 408 (452)
+|.|++++++.|....
T Consensus 150 tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 150 EGRGIDALREHLLQLP 165 (614)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999987654
No 206
>PRK10218 GTP-binding protein; Provisional
Probab=99.58 E-value=1.1e-14 Score=155.46 Aligned_cols=158 Identities=15% Similarity=0.157 Sum_probs=111.7
Q ss_pred ccEEEeeecccCCcceeeeccc--ccccccc------------CCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQ--NKFLDNY------------KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI 306 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~--~~~~~~~------------~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~ 306 (452)
-+|+|+|..++|||||+++|+. +.+.... ..+.+.++......+ ..+.+.+.+|||+|+..|.
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i---~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAI---KWNDYRINIVDTPGHADFG 82 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEE---ecCCEEEEEEECCCcchhH
Confidence 5799999999999999999986 2222111 123344444444444 5567899999999999999
Q ss_pred hhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--CcccHHHHHHHHHHcCC-
Q psy14768 307 CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--RQVEINEIEAVCHQYNF- 383 (452)
Q Consensus 307 ~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--~~~~~e~~~~~~~~~~~- 383 (452)
..+..+++.+|++|+|+|++++...+....|...... ++|+++|+||+|+.. .....+++..++..++.
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~--------gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~ 154 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY--------GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDAT 154 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc--------CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcc
Confidence 9999999999999999999987655555445443333 389999999999865 11222344444322221
Q ss_pred -----CEEEEecCCCCc----------cHHHHHHHHHHHHH
Q psy14768 384 -----MSWIEVSSKEHL----------MIEDSMNFLVDRII 409 (452)
Q Consensus 384 -----~~~~evSAktg~----------nv~~lf~~i~~~i~ 409 (452)
.+++++||++|. ++..+|+.++..+-
T Consensus 155 ~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 155 DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 238999999998 57888887776654
No 207
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.57 E-value=2e-14 Score=153.64 Aligned_cols=158 Identities=15% Similarity=0.169 Sum_probs=103.0
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeec---CCeeE----------EEEEEecCCcchh
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY---GGRPV----------KLQIWDIAGQDRY 305 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~---~~~~~----------~l~l~DtaG~e~~ 305 (452)
....|+++|++|+|||||++++.+..+......+++.+........... .+... .+.||||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 3567999999999999999999876554444443333322221111000 01111 2689999999999
Q ss_pred hhhhhhhhcCCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cc--cc---------
Q psy14768 306 ICMSRVYYQNSDGCIIMFDLTNR---KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQ--VE--------- 370 (452)
Q Consensus 306 ~~~~~~~i~~ad~vIlV~D~t~~---~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~--~~--------- 370 (452)
..++...+..+|++|+|||++++ .+++.+.. +.. .++|+++|+||+|+.. .. ..
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~-------~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~ 153 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR-------RKTPFVVAANKIDRIPGWKSTEDAPFLESIEK 153 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH-------cCCCEEEEEECcCCchhhhhhcCchHHHHHhh
Confidence 99998889999999999999984 44444332 221 3589999999999853 10 00
Q ss_pred -----HH-------HHHHHHHHc--------------CCCEEEEecCCCCccHHHHHHHHHHH
Q psy14768 371 -----IN-------EIEAVCHQY--------------NFMSWIEVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 371 -----~e-------~~~~~~~~~--------------~~~~~~evSAktg~nv~~lf~~i~~~ 407 (452)
.+ ++..++... +..+++.+||++|.|+.+++..+...
T Consensus 154 ~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 154 QSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 00 011112222 23458999999999999999887644
No 208
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.57 E-value=7e-15 Score=138.94 Aligned_cols=145 Identities=10% Similarity=0.124 Sum_probs=96.4
Q ss_pred cEEEeeecccCCcceeeecccccc--------------------------c-----cccCCcceeeeEEEEEEeeecCCe
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKF--------------------------L-----DNYKNTVGVDFSTKLLSHKKYGGR 290 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~--------------------------~-----~~~~~t~~~d~~~~~i~~~~~~~~ 290 (452)
.|+++|..++|||||+.+|+...- . .+...+++++.....+.. .
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-----~ 75 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-----E 75 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-----C
Confidence 478999999999999998863110 0 111234455555554444 5
Q ss_pred eEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh-------hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCC
Q psy14768 291 PVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK-------SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCD 363 (452)
Q Consensus 291 ~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~-------S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~D 363 (452)
...+.+|||+|+..|...+...+..+|++|+|+|+++.. ..+..+.|.. .... ..+|+++|+||+|
T Consensus 76 ~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~iiivvNK~D 148 (219)
T cd01883 76 KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALL-ARTL------GVKQLIVAVNKMD 148 (219)
T ss_pred CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHH-HHHc------CCCeEEEEEEccc
Confidence 577899999999888776667788999999999999842 2223333322 2211 2368999999999
Q ss_pred CCCC---c----ccHHHHHHHHHHcCC----CEEEEecCCCCccHH
Q psy14768 364 LPDR---Q----VEINEIEAVCHQYNF----MSWIEVSSKEHLMIE 398 (452)
Q Consensus 364 l~~~---~----~~~e~~~~~~~~~~~----~~~~evSAktg~nv~ 398 (452)
+... . ...+++..++..+++ .+++.+||++|.||+
T Consensus 149 l~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 149 DVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 9731 1 112233334555554 458999999999987
No 209
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.57 E-value=1.3e-14 Score=136.39 Aligned_cols=149 Identities=17% Similarity=0.179 Sum_probs=96.6
Q ss_pred cEEEeeecccCCcceeeeccccccccc-------------------cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDN-------------------YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~-------------------~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~ 302 (452)
+|+++|..++|||||+++|+....... ...+++.......+.+...++..+.+.+|||+|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999986433221 0011222222222222111355688999999999
Q ss_pred chhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--C-----------cc
Q psy14768 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--R-----------QV 369 (452)
Q Consensus 303 e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--~-----------~~ 369 (452)
+.|......++..+|++|+|+|+++..+++.. .++..+.. .++|+++|+||+|+.. . ..
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~-~~~~~~~~-------~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~ 153 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE-RLIRHAIL-------EGLPIVLVINKIDRLILELKLPPNDAYFKLRH 153 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHH-------cCCCEEEEEECcccCcccccCCHHHHHHHHHH
Confidence 99988888889999999999999988776543 33333322 2389999999999852 0 00
Q ss_pred cHHHHHHHHHHcCC------CE----EEEecCCCCccHH
Q psy14768 370 EINEIEAVCHQYNF------MS----WIEVSSKEHLMIE 398 (452)
Q Consensus 370 ~~e~~~~~~~~~~~------~~----~~evSAktg~nv~ 398 (452)
..+++..++..+++ .+ +++.||+.+..+.
T Consensus 154 ~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 154 IIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 11223334444433 22 5789999987654
No 210
>KOG1191|consensus
Probab=99.56 E-value=4.7e-15 Score=149.15 Aligned_cols=169 Identities=16% Similarity=0.123 Sum_probs=120.0
Q ss_pred CcccEEEeeecccCCcceeeeccc-cccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh--------hhh
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQ-NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI--------CMS 309 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~-~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~--------~~~ 309 (452)
..++|+|+|+||||||||+|.|.+ ++.+++..+++++|.....+++ ++ +.+.|.||||.++.+ -.+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~---~G--~~v~L~DTAGiRe~~~~~iE~~gI~r 341 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTV---NG--VPVRLSDTAGIREESNDGIEALGIER 341 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeec---CC--eEEEEEeccccccccCChhHHHhHHH
Confidence 458999999999999999999998 6777899999999999999887 55 556778999987621 111
Q ss_pred -hhhhcCCCEEEEEEeCCChhhHHHH--HHHHHHHHhhhh--hcCCCCCcEEEEEECCCCCC--CcccHHHHHHHHHHc-
Q psy14768 310 -RVYYQNSDGCIIMFDLTNRKSFESV--VQWKHDLDSKCI--LDNGAMLPCLLLASKCDLPD--RQVEINEIEAVCHQY- 381 (452)
Q Consensus 310 -~~~i~~ad~vIlV~D~t~~~S~~~~--~~~~~~i~~~~~--~~~~~~~piilV~NK~Dl~~--~~~~~e~~~~~~~~~- 381 (452)
...+++||++++|+|+....+.+++ ...+......+. .+.....+++++.||.|+.. .+..... ..+....
T Consensus 342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~ 420 (531)
T KOG1191|consen 342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEG 420 (531)
T ss_pred HHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eecccccc
Confidence 2358899999999999544333333 345555544431 12235689999999999975 1211111 1111111
Q ss_pred --CCCEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 382 --NFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 382 --~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
.+....++|+++++++.++...+...+.....
T Consensus 421 ~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 421 RSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred CcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 12224789999999999999999988876644
No 211
>PRK12736 elongation factor Tu; Reviewed
Probab=99.55 E-value=2.8e-14 Score=146.38 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=106.9
Q ss_pred CCcccEEEeeecccCCcceeeeccccc-------c---------ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNK-------F---------LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~-------~---------~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG 301 (452)
...++|+++|..++|||||+++|++.. + ..+...+++.+..... + ......+.||||||
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~--~---~~~~~~i~~iDtPG 84 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVE--Y---ETEKRHYAHVDCPG 84 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeE--e---cCCCcEEEEEECCC
Confidence 446889999999999999999997521 0 1112344555543333 3 44556788999999
Q ss_pred cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCC-Cc---ccHHHHHH
Q psy14768 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPD-RQ---VEINEIEA 376 (452)
Q Consensus 302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~-~~---~~~e~~~~ 376 (452)
+++|.......+..+|++|+|+|++++..-+..+.|...... ++| +|||+||+|+.+ .+ ...+++.+
T Consensus 85 h~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~--------g~~~~IvviNK~D~~~~~~~~~~i~~~i~~ 156 (394)
T PRK12736 85 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV--------GVPYLVVFLNKVDLVDDEELLELVEMEVRE 156 (394)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc--------CCCEEEEEEEecCCcchHHHHHHHHHHHHH
Confidence 998877666777899999999999987555554444332222 377 678999999974 11 12345666
Q ss_pred HHHHcCC----CEEEEecCCCCc--------cHHHHHHHHHHH
Q psy14768 377 VCHQYNF----MSWIEVSSKEHL--------MIEDSMNFLVDR 407 (452)
Q Consensus 377 ~~~~~~~----~~~~evSAktg~--------nv~~lf~~i~~~ 407 (452)
++...++ .+++++||++|. ++.++++.+.+.
T Consensus 157 ~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~ 199 (394)
T PRK12736 157 LLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEY 199 (394)
T ss_pred HHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHh
Confidence 6666665 468999999983 455565555544
No 212
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.54 E-value=1.9e-14 Score=148.09 Aligned_cols=163 Identities=13% Similarity=0.149 Sum_probs=104.2
Q ss_pred CcccEEEeeecccCCcceeeecccccc---ccccCCcceeeeEEEEEE--------------eee-cCC------eeEEE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKF---LDNYKNTVGVDFSTKLLS--------------HKK-YGG------RPVKL 294 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~---~~~~~~t~~~d~~~~~i~--------------~~~-~~~------~~~~l 294 (452)
..++|+++|..++|||||+++|.+... ..+...+++.+.....+. ... ++. ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 357899999999999999998865211 111111222221111000 000 011 14678
Q ss_pred EEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCc---cc
Q psy14768 295 QIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK-SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQ---VE 370 (452)
Q Consensus 295 ~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~-S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~---~~ 370 (452)
.+|||||+++|...+...+..+|++|||+|++++. ..+..+.+ ..+... ...++++|+||+|+.+.. ..
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l-~~l~~~------gi~~iIVvvNK~Dl~~~~~~~~~ 155 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHL-MALEII------GIKNIVIVQNKIDLVSKEKALEN 155 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHH-HHHHHc------CCCeEEEEEEccccCCHHHHHHH
Confidence 99999999999888888888999999999999754 22222222 222222 225799999999997511 22
Q ss_pred HHHHHHHHHHc--CCCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768 371 INEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 371 ~e~~~~~~~~~--~~~~~~evSAktg~nv~~lf~~i~~~i 408 (452)
.+++.++.... ...+++++||++|.|+++++++|...+
T Consensus 156 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 156 YEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 34444444433 123589999999999999999998754
No 213
>CHL00071 tufA elongation factor Tu
Probab=99.54 E-value=4.1e-14 Score=145.80 Aligned_cols=148 Identities=14% Similarity=0.138 Sum_probs=104.1
Q ss_pred CCCcccEEEeeecccCCcceeeecccccc----------------ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecC
Q psy14768 237 QIPTYPILITGDSTVGKTSYVQGFVQNKF----------------LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300 (452)
Q Consensus 237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~----------------~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~Dta 300 (452)
+...++|+++|.+++|||||+++|++... ..+...+++.+.....+ ..+...+.|+|||
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~-----~~~~~~~~~iDtP 83 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEY-----ETENRHYAHVDCP 83 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEE-----ccCCeEEEEEECC
Confidence 44568899999999999999999986311 11222455555444333 3355677899999
Q ss_pred CcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCC-C---cccHHHHH
Q psy14768 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPD-R---QVEINEIE 375 (452)
Q Consensus 301 G~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~-~---~~~~e~~~ 375 (452)
|+.+|.......+..+|++++|+|+.++..-+..+.+...... ++| +|+|+||+|+.+ . +...+++.
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~--------g~~~iIvvvNK~D~~~~~~~~~~~~~~l~ 155 (409)
T CHL00071 84 GHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV--------GVPNIVVFLNKEDQVDDEELLELVELEVR 155 (409)
T ss_pred ChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc--------CCCEEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 9998877667778899999999999987655555444332222 378 778999999976 1 11224566
Q ss_pred HHHHHcCC----CEEEEecCCCCccH
Q psy14768 376 AVCHQYNF----MSWIEVSSKEHLMI 397 (452)
Q Consensus 376 ~~~~~~~~----~~~~evSAktg~nv 397 (452)
.++...++ .+++++||++|.|+
T Consensus 156 ~~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 156 ELLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHHHhCCCCCcceEEEcchhhcccc
Confidence 66666664 56899999999754
No 214
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.54 E-value=4.3e-14 Score=145.08 Aligned_cols=146 Identities=16% Similarity=0.195 Sum_probs=101.1
Q ss_pred CCCcccEEEeeecccCCcceeeecccc----------------ccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecC
Q psy14768 237 QIPTYPILITGDSTVGKTSYVQGFVQN----------------KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300 (452)
Q Consensus 237 ~~~~~kI~ivG~~nvGKSSLin~l~~~----------------~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~Dta 300 (452)
....++|+++|..++|||||+++|++. ....+...+++.+..... + ......+.|||||
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~--~---~~~~~~~~liDtp 83 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVE--Y---ETENRHYAHVDCP 83 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEE--E---cCCCEEEEEEECC
Confidence 345688999999999999999999732 011122345555554333 3 4456678899999
Q ss_pred CcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcE-EEEEECCCCCC-Cc---ccHHHHH
Q psy14768 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC-LLLASKCDLPD-RQ---VEINEIE 375 (452)
Q Consensus 301 G~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~pi-ilV~NK~Dl~~-~~---~~~e~~~ 375 (452)
|+++|..........+|++++|+|++++...+..+.+...... ++|. |+|+||+|+.+ .+ ...++++
T Consensus 84 Gh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~--------gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~ 155 (394)
T TIGR00485 84 GHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV--------GVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (394)
T ss_pred chHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--------CCCEEEEEEEecccCCHHHHHHHHHHHHH
Confidence 9999876666667889999999999986555554444332222 3665 47899999975 11 1234567
Q ss_pred HHHHHcCC----CEEEEecCCCCc
Q psy14768 376 AVCHQYNF----MSWIEVSSKEHL 395 (452)
Q Consensus 376 ~~~~~~~~----~~~~evSAktg~ 395 (452)
+++..+++ .+++++||++|.
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 156 ELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHhcCCCccCccEEECcccccc
Confidence 77777764 458999999875
No 215
>PRK12735 elongation factor Tu; Reviewed
Probab=99.54 E-value=3.5e-14 Score=145.70 Aligned_cols=157 Identities=16% Similarity=0.188 Sum_probs=105.6
Q ss_pred CCcccEEEeeecccCCcceeeecccc-------cc---------ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQN-------KF---------LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~-------~~---------~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG 301 (452)
...++|+++|.+++|||||+++|++. .+ ..+...+++.+.....+ .....++.|+||||
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~-----~~~~~~i~~iDtPG 84 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEY-----ETANRHYAHVDCPG 84 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEE-----cCCCcEEEEEECCC
Confidence 45688999999999999999999851 11 11223455555433332 34556788999999
Q ss_pred cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEE-EEEECCCCCCC----cccHHHHHH
Q psy14768 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL-LLASKCDLPDR----QVEINEIEA 376 (452)
Q Consensus 302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~pii-lV~NK~Dl~~~----~~~~e~~~~ 376 (452)
+++|.......+..+|++++|+|+.++...+..+.+. .+.. .++|.+ +|+||+|+.+. +...+++..
T Consensus 85 h~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~-~~~~-------~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~ 156 (396)
T PRK12735 85 HADYVKNMITGAAQMDGAILVVSAADGPMPQTREHIL-LARQ-------VGVPYIVVFLNKCDMVDDEELLELVEMEVRE 156 (396)
T ss_pred HHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHH-HHHH-------cCCCeEEEEEEecCCcchHHHHHHHHHHHHH
Confidence 9988766667788999999999999865544443333 2322 237755 67999999741 122235666
Q ss_pred HHHHcCC----CEEEEecCCCCc----------cHHHHHHHHHHH
Q psy14768 377 VCHQYNF----MSWIEVSSKEHL----------MIEDSMNFLVDR 407 (452)
Q Consensus 377 ~~~~~~~----~~~~evSAktg~----------nv~~lf~~i~~~ 407 (452)
++..+++ .+|+++||++|. ++.++++.+...
T Consensus 157 ~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred HHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 7776654 458999999985 455555555543
No 216
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.54 E-value=3.7e-14 Score=151.64 Aligned_cols=155 Identities=15% Similarity=0.196 Sum_probs=108.1
Q ss_pred cEEEeeecccCCcceeeecccc--ccccc--------------cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh
Q psy14768 242 PILITGDSTVGKTSYVQGFVQN--KFLDN--------------YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY 305 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~--~~~~~--------------~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~ 305 (452)
+|+|+|..++|||||+++|+.. .+... ...+++.......+ .++.+.+.||||||+..|
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v-----~~~~~kinlIDTPGh~DF 77 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAI-----RYNGTKINIVDTPGHADF 77 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEE-----EECCEEEEEEECCCHHHH
Confidence 5899999999999999999852 21111 11123333333333 335678999999999999
Q ss_pred hhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C-cccHHHHHHHHHH---
Q psy14768 306 ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R-QVEINEIEAVCHQ--- 380 (452)
Q Consensus 306 ~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~-~~~~e~~~~~~~~--- 380 (452)
...+..+++.+|++|||+|++++..-+. ..|+..+... ++|+|||+||+|+.+ + ....+++..++..
T Consensus 78 ~~ev~~~l~~aD~alLVVDa~~G~~~qT-~~~l~~a~~~-------~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~ 149 (594)
T TIGR01394 78 GGEVERVLGMVDGVLLLVDASEGPMPQT-RFVLKKALEL-------GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGA 149 (594)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCcHHH-HHHHHHHHHC-------CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcc
Confidence 9888999999999999999998653333 3444444433 489999999999865 2 1123344444432
Q ss_pred ----cCCCEEEEecCCCCc----------cHHHHHHHHHHHHHH
Q psy14768 381 ----YNFMSWIEVSSKEHL----------MIEDSMNFLVDRIIC 410 (452)
Q Consensus 381 ----~~~~~~~evSAktg~----------nv~~lf~~i~~~i~~ 410 (452)
+.+ +++++||++|. ++..+|+.+++.+-.
T Consensus 150 ~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 150 DDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred ccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 233 48999999996 799999988877643
No 217
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.53 E-value=5e-14 Score=133.44 Aligned_cols=157 Identities=13% Similarity=0.195 Sum_probs=98.3
Q ss_pred cEEEeeecccCCcceeeeccccccccccC--------------C---------cceeeeEEEEEEe----------eecC
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYK--------------N---------TVGVDFSTKLLSH----------KKYG 288 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~--------------~---------t~~~d~~~~~i~~----------~~~~ 288 (452)
+|+++|+.++|||||+++|..+.+..... . ..+.+.....+.+ ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68899999999999999998644422110 0 0111110000000 0001
Q ss_pred CeeEEEEEEecCCcchhhhhhhhhhc--CCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768 289 GRPVKLQIWDIAGQDRYICMSRVYYQ--NSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366 (452)
Q Consensus 289 ~~~~~l~l~DtaG~e~~~~~~~~~i~--~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~ 366 (452)
.....+.|+||||+++|.......+. .+|++++|+|+.++..-++.+.+...... ++|+++|+||+|+.+
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~--------~ip~ivvvNK~D~~~ 152 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALAL--------NIPVFVVVTKIDLAP 152 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHc--------CCCEEEEEECccccC
Confidence 23456888999999998765554454 79999999999987765555443332222 389999999999875
Q ss_pred Cccc---HHHHHHHHHH-------------------------cCCCEEEEecCCCCccHHHHHHHHHH
Q psy14768 367 RQVE---INEIEAVCHQ-------------------------YNFMSWIEVSSKEHLMIEDSMNFLVD 406 (452)
Q Consensus 367 ~~~~---~e~~~~~~~~-------------------------~~~~~~~evSAktg~nv~~lf~~i~~ 406 (452)
.... .+++.++... ....++|.+||.+|.|++++...|..
T Consensus 153 ~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 153 ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 2212 2223333321 11336899999999999999887743
No 218
>KOG0074|consensus
Probab=99.52 E-value=1.5e-14 Score=122.46 Aligned_cols=161 Identities=24% Similarity=0.319 Sum_probs=118.0
Q ss_pred CCCCCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhh
Q psy14768 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYY 313 (452)
Q Consensus 234 ~~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i 313 (452)
......+++|.++|-.|+|||||+..+..+... ...+|.|.+..... + ...+.+.+||.+||+..+..|..||
T Consensus 11 ks~t~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~GFn~k~v~--~----~g~f~LnvwDiGGqr~IRpyWsNYy 83 (185)
T KOG0074|consen 11 KSRTRREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNGFNTKKVE--Y----DGTFHLNVWDIGGQRGIRPYWSNYY 83 (185)
T ss_pred cCCCcceEEEEEEecCCCcchhHHHHHccCChh-hccccCCcceEEEe--e----cCcEEEEEEecCCccccchhhhhhh
Confidence 334456799999999999999999998875543 44477775554443 3 3458899999999999999999999
Q ss_pred cCCCEEEEEEeCCChhhHHHHHHHHHHH-HhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHH-----HHcCCCEEE
Q psy14768 314 QNSDGCIIMFDLTNRKSFESVVQWKHDL-DSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVC-----HQYNFMSWI 387 (452)
Q Consensus 314 ~~ad~vIlV~D~t~~~S~~~~~~~~~~i-~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~-----~~~~~~~~~ 387 (452)
++.|++|+|+|.+|..-|+.+..-+-++ +.. ....+|+.|..||.|+.- +...+++..-+ +...+. +.
T Consensus 84 envd~lIyVIDS~D~krfeE~~~el~ELleee----Kl~~vpvlIfankQdllt-aa~~eeia~klnl~~lrdRswh-Iq 157 (185)
T KOG0074|consen 84 ENVDGLIYVIDSTDEKRFEEISEELVELLEEE----KLAEVPVLIFANKQDLLT-AAKVEEIALKLNLAGLRDRSWH-IQ 157 (185)
T ss_pred hccceEEEEEeCCchHhHHHHHHHHHHHhhhh----hhhccceeehhhhhHHHh-hcchHHHHHhcchhhhhhceEE-ee
Confidence 9999999999999998888885533333 333 456799999999999874 22222221111 111222 57
Q ss_pred EecCCCCccHHHHHHHHHHH
Q psy14768 388 EVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 388 evSAktg~nv~~lf~~i~~~ 407 (452)
++||.++.++..-.+|+...
T Consensus 158 ~csals~eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 158 ECSALSLEGSTDGSDWVQSN 177 (185)
T ss_pred eCccccccCccCcchhhhcC
Confidence 99999999998888877643
No 219
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.51 E-value=6.2e-14 Score=144.38 Aligned_cols=165 Identities=16% Similarity=0.197 Sum_probs=103.8
Q ss_pred CCCcccEEEeeecccCCcceeeecccc---ccccccCCcceeeeEEEEEEee------------e---cC--C----eeE
Q psy14768 237 QIPTYPILITGDSTVGKTSYVQGFVQN---KFLDNYKNTVGVDFSTKLLSHK------------K---YG--G----RPV 292 (452)
Q Consensus 237 ~~~~~kI~ivG~~nvGKSSLin~l~~~---~~~~~~~~t~~~d~~~~~i~~~------------~---~~--~----~~~ 292 (452)
....++|+++|..++|||||+.+|.+. ....+...+++.+.......+. . ++ + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 345689999999999999999888642 1111212233332211110000 0 00 0 135
Q ss_pred EEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcc--
Q psy14768 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK-SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQV-- 369 (452)
Q Consensus 293 ~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~-S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~-- 369 (452)
.+.||||||++.|..........+|++|+|+|++++. ..+....+. .+... ...|+++|+||+|+.+...
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~-~l~~~------~i~~iiVVlNK~Dl~~~~~~~ 158 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM-ALDII------GIKNIVIVQNKIDLVSKERAL 158 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH-HHHHc------CCCcEEEEEEeeccccchhHH
Confidence 7899999999988766556667889999999999754 333333322 22221 2257999999999975211
Q ss_pred -cHHHHHHHHHHc--CCCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768 370 -EINEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 370 -~~e~~~~~~~~~--~~~~~~evSAktg~nv~~lf~~i~~~i 408 (452)
..+++..++... ...+++++||++|.|++++|+.|...+
T Consensus 159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 223444444432 124589999999999999999988765
No 220
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.51 E-value=2.9e-13 Score=120.47 Aligned_cols=155 Identities=21% Similarity=0.320 Sum_probs=116.5
Q ss_pred CcccEEEeeecccCCcceeeecccccccc--------ccC----CcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLD--------NYK----NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI 306 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~--------~~~----~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~ 306 (452)
...||+++|+-++||||++.+++....+. ++. -|+..|+....+ .....+.|+|||||++|.
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~------~~~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL------DEDTGVHLFGTPGQERFK 82 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE------cCcceEEEecCCCcHHHH
Confidence 46899999999999999999998755321 111 233445544442 223568899999999999
Q ss_pred hhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcC-CCE
Q psy14768 307 CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYN-FMS 385 (452)
Q Consensus 307 ~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~-~~~ 385 (452)
-+|..+.+.++++|+++|.+.+..| .....+..+... ..+|++|++||.||.+ ....++++++..... -.+
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~------~~ip~vVa~NK~DL~~-a~ppe~i~e~l~~~~~~~~ 154 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR------NPIPVVVAINKQDLFD-ALPPEKIREALKLELLSVP 154 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc------cCCCEEEEeeccccCC-CCCHHHHHHHHHhccCCCc
Confidence 9999999999999999999999999 334444444433 1299999999999986 345666666666552 334
Q ss_pred EEEecCCCCccHHHHHHHHHHH
Q psy14768 386 WIEVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 386 ~~evSAktg~nv~~lf~~i~~~ 407 (452)
.++++|.+++++.+.++.+...
T Consensus 155 vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 155 VIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeeeecccchhHHHHHHHHHhh
Confidence 8999999999999998887765
No 221
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.50 E-value=1.3e-13 Score=131.82 Aligned_cols=113 Identities=18% Similarity=0.201 Sum_probs=78.9
Q ss_pred cEEEeeecccCCcceeeeccccccc-cc----cCCc-----------ceeeeEEEEEEeeecCCeeEEEEEEecCCcchh
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFL-DN----YKNT-----------VGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY 305 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~-~~----~~~t-----------~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~ 305 (452)
+|+++|..|+|||||+++++...-. .. ...+ .+..+......+ ..+.+.+.+|||+|+..|
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~---~~~~~~i~liDTPG~~~f 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASF---QWEDTKVNLIDTPGHMDF 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEE---EECCEEEEEEeCCCccch
Confidence 4789999999999999999853111 00 0001 111122222222 445678999999999999
Q ss_pred hhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768 306 ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365 (452)
Q Consensus 306 ~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~ 365 (452)
...+..+++.+|++|+|+|++++...+.. .++..+... ++|+++|+||+|+.
T Consensus 78 ~~~~~~~l~~aD~~IlVvd~~~g~~~~~~-~~~~~~~~~-------~~P~iivvNK~D~~ 129 (237)
T cd04168 78 IAEVERSLSVLDGAILVISAVEGVQAQTR-ILWRLLRKL-------NIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHHc-------CCCEEEEEECcccc
Confidence 88888899999999999999988665443 333434332 48999999999985
No 222
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.50 E-value=1.3e-13 Score=130.12 Aligned_cols=116 Identities=15% Similarity=0.188 Sum_probs=82.1
Q ss_pred cEEEeeecccCCcceeeecccccc-cccc---------------CCcceeeeEEEEEEeee-----cCCeeEEEEEEecC
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKF-LDNY---------------KNTVGVDFSTKLLSHKK-----YGGRPVKLQIWDIA 300 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~-~~~~---------------~~t~~~d~~~~~i~~~~-----~~~~~~~l~l~Dta 300 (452)
.|+++|..++|||||+.+|+...- +... ..+++.......+.+.. .+++.+.+.|||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 589999999999999999975321 1111 11122222222222210 02447889999999
Q ss_pred CcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365 (452)
Q Consensus 301 G~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~ 365 (452)
|++.|......+++.+|++|+|||++++.+.+....|...... ++|++||+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~--------~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE--------RVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc--------CCCEEEEEECCCcc
Confidence 9999999889999999999999999998877765555444333 38999999999985
No 223
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.50 E-value=3.7e-13 Score=122.28 Aligned_cols=158 Identities=16% Similarity=0.211 Sum_probs=107.5
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC----------cchhhhh
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG----------QDRYICM 308 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG----------~e~~~~~ 308 (452)
....|+++|++|||||||+|.++++........|.|..-....+.+ ++. +.|+|.|| ++.+..+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~---~~~---~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV---DDE---LRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe---cCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence 3468999999999999999999997754444455554444444444 443 67889998 3344555
Q ss_pred hhhhhcC---CCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCC--
Q psy14768 309 SRVYYQN---SDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNF-- 383 (452)
Q Consensus 309 ~~~~i~~---ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~-- 383 (452)
...|++. -.++++++|+..+....|.+. ++-+.. .++|++||+||+|..............++.+..
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~em-~~~l~~-------~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~ 168 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDREM-IEFLLE-------LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP 168 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHHHH-HHHHHH-------cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC
Confidence 5566654 468899999998877666533 222332 349999999999998632223333444443322
Q ss_pred --CE-EEEecCCCCccHHHHHHHHHHHHHH
Q psy14768 384 --MS-WIEVSSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 384 --~~-~~evSAktg~nv~~lf~~i~~~i~~ 410 (452)
.. ++.+|+.++.|++++...|.+.+..
T Consensus 169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 169 PDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 11 6789999999999999988887654
No 224
>KOG0072|consensus
Probab=99.50 E-value=1.3e-13 Score=117.09 Aligned_cols=160 Identities=20% Similarity=0.262 Sum_probs=117.0
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
.+.+++++|-.|+||++++-++--.+. +...|+++.+.... ..++..+++||..|+-..+..|+-||.+.|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~v-------~yKNLk~~vwdLggqtSirPyWRcYy~dt~a 88 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVETV-------PYKNLKFQVWDLGGQTSIRPYWRCYYADTDA 88 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCcccc-------ccccccceeeEccCcccccHHHHHHhcccce
Confidence 457899999999999999998875554 35568888655443 2367889999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHH-HHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHH----HHHHHHcCCCEEEEecCCC
Q psy14768 319 CIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEI----EAVCHQYNFMSWIEVSSKE 393 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~-~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~----~~~~~~~~~~~~~evSAkt 393 (452)
+|+|+|.+|......... ++..+.+. ...+..+++++||.|...+....|.. ..-.+..-+ .+|++||.+
T Consensus 89 vIyVVDssd~dris~a~~el~~mL~E~----eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~-~Iv~tSA~k 163 (182)
T KOG0072|consen 89 VIYVVDSSDRDRISIAGVELYSMLQEE----ELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIW-QIVKTSAVK 163 (182)
T ss_pred EEEEEeccchhhhhhhHHHHHHHhccH----hhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhhee-EEEeecccc
Confidence 999999999865544433 23333222 34567889999999986522222221 112222223 379999999
Q ss_pred CccHHHHHHHHHHHHHHh
Q psy14768 394 HLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 394 g~nv~~lf~~i~~~i~~~ 411 (452)
|.+++.+++|+.+.+..+
T Consensus 164 g~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 164 GEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred ccCCcHHHHHHHHHHhcc
Confidence 999999999999887643
No 225
>KOG1423|consensus
Probab=99.48 E-value=1.8e-13 Score=130.24 Aligned_cols=162 Identities=17% Similarity=0.180 Sum_probs=105.4
Q ss_pred CCCCcccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc------chhhh-
Q psy14768 236 IQIPTYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ------DRYIC- 307 (452)
Q Consensus 236 ~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~------e~~~~- 307 (452)
+......|+++|.||||||||.|.+++.+.. .+....+++....-.+ .....+++|+||||. +++..
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~-----ts~eTQlvf~DTPGlvs~~~~r~~~l~ 142 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGII-----TSGETQLVFYDTPGLVSKKMHRRHHLM 142 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEE-----ecCceEEEEecCCcccccchhhhHHHH
Confidence 3445689999999999999999999996654 3333333333323233 235578999999993 22221
Q ss_pred -----hhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--------------Cc
Q psy14768 308 -----MSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--------------RQ 368 (452)
Q Consensus 308 -----~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--------------~~ 368 (452)
....++.+||.+++|+|+++....-. ...+..+..+ .++|-|||.||.|... .+
T Consensus 143 ~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~ 215 (379)
T KOG1423|consen 143 MSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGE 215 (379)
T ss_pred HHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccc
Confidence 12346889999999999997432111 2344455555 4589999999999753 11
Q ss_pred ccHHHHHHHHHHcC----------------CCEEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768 369 VEINEIEAVCHQYN----------------FMSWIEVSSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 369 ~~~e~~~~~~~~~~----------------~~~~~evSAktg~nv~~lf~~i~~~i~~ 410 (452)
.. ..-.++.+++. |..+|.+||++|.||+++-+++..+...
T Consensus 216 l~-~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 216 LA-KLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred cc-hhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 11 11122333332 2336999999999999999999876543
No 226
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.47 E-value=2.1e-13 Score=143.15 Aligned_cols=157 Identities=16% Similarity=0.167 Sum_probs=122.7
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh------hhhhhh-
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI------CMSRVY- 312 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~------~~~~~~- 312 (452)
..+|+++|.||||||||.|++++.+..+.+-|+++.+-..-.+.. .+ .++.++|.||.-... .....|
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~---~~--~~i~ivDLPG~YSL~~~S~DE~Var~~l 77 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKY---KG--HEIEIVDLPGTYSLTAYSEDEKVARDFL 77 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEe---cC--ceEEEEeCCCcCCCCCCCchHHHHHHHH
Confidence 456999999999999999999998888888899998887777666 44 447788999953211 222334
Q ss_pred h-cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecC
Q psy14768 313 Y-QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSS 391 (452)
Q Consensus 313 i-~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSA 391 (452)
+ .+.|++|-|+|+++-+ .++...++.++-. +|++++.|++|..+++-..-+.+++.+.+|.+ .+++||
T Consensus 78 l~~~~D~ivnVvDAtnLe--RnLyltlQLlE~g--------~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvP-Vv~tvA 146 (653)
T COG0370 78 LEGKPDLIVNVVDATNLE--RNLYLTLQLLELG--------IPMILALNMIDEAKKRGIRIDIEKLSKLLGVP-VVPTVA 146 (653)
T ss_pred hcCCCCEEEEEcccchHH--HHHHHHHHHHHcC--------CCeEEEeccHhhHHhcCCcccHHHHHHHhCCC-EEEEEe
Confidence 3 3579999999999875 4444455555544 89999999999987555566788899999998 999999
Q ss_pred CCCccHHHHHHHHHHHHHHhh
Q psy14768 392 KEHLMIEDSMNFLVDRIICSK 412 (452)
Q Consensus 392 ktg~nv~~lf~~i~~~i~~~~ 412 (452)
++|.|+++++..+.+......
T Consensus 147 ~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 147 KRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred ecCCCHHHHHHHHHHhccccc
Confidence 999999999999987554444
No 227
>COG2262 HflX GTPases [General function prediction only]
Probab=99.47 E-value=4.9e-13 Score=132.80 Aligned_cols=159 Identities=13% Similarity=0.111 Sum_probs=117.9
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc---------hhhhhh
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD---------RYICMS 309 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e---------~~~~~~ 309 (452)
.-..|+++|..|+|||||+|++.+........-..+.|.....+.+ .+ ...+.+.||-|-- .|++..
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l---~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL 266 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIEL---GD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL 266 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEe---CC-CceEEEecCccCcccCChHHHHHHHHHH
Confidence 4578999999999999999999987777676777777888888777 33 4456777999932 233322
Q ss_pred hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEe
Q psy14768 310 RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEV 389 (452)
Q Consensus 310 ~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~ev 389 (452)
.-...||+++.|+|++++...+.++.....+... ....+|+|+|.||.|+..... ....+..... ..+++
T Consensus 267 -EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el----~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~~~--~~v~i 336 (411)
T COG2262 267 -EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEI----GADEIPIILVLNKIDLLEDEE---ILAELERGSP--NPVFI 336 (411)
T ss_pred -HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHc----CCCCCCEEEEEecccccCchh---hhhhhhhcCC--CeEEE
Confidence 2246899999999999997777776666666665 445699999999999875222 1112222222 37999
Q ss_pred cCCCCccHHHHHHHHHHHHHHh
Q psy14768 390 SSKEHLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~~i~~~ 411 (452)
||++|.|++.+++.|...+...
T Consensus 337 SA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 337 SAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred EeccCcCHHHHHHHHHHHhhhc
Confidence 9999999999999999888744
No 228
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.47 E-value=2.2e-13 Score=140.18 Aligned_cols=147 Identities=14% Similarity=0.170 Sum_probs=98.6
Q ss_pred ccEEEeeecccCCcceeeeccccc-cccc--------------------------------cCCcceeeeEEEEEEeeec
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNK-FLDN--------------------------------YKNTVGVDFSTKLLSHKKY 287 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~-~~~~--------------------------------~~~t~~~d~~~~~i~~~~~ 287 (452)
++|+++|..++|||||+++|+... .+.. ..-+++.+.....+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~----- 75 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYF----- 75 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEE-----
Confidence 478999999999999999997421 1111 01122334333333
Q ss_pred CCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-
Q psy14768 288 GGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD- 366 (452)
Q Consensus 288 ~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~- 366 (452)
......+.||||||+++|...+...+..+|++|+|+|+.++..-+..+.|....... ..++|||+||+|+.+
T Consensus 76 ~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~-------~~~iivviNK~D~~~~ 148 (406)
T TIGR02034 76 STDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLG-------IRHVVLAVNKMDLVDY 148 (406)
T ss_pred ccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcC-------CCcEEEEEEecccccc
Confidence 334567889999999999766667789999999999999876555444433222211 246899999999975
Q ss_pred Ccc----cHHHHHHHHHHcCC--CEEEEecCCCCccHHH
Q psy14768 367 RQV----EINEIEAVCHQYNF--MSWIEVSSKEHLMIED 399 (452)
Q Consensus 367 ~~~----~~e~~~~~~~~~~~--~~~~evSAktg~nv~~ 399 (452)
... ..++...+...+++ .+++.+||++|.|+.+
T Consensus 149 ~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 149 DEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 211 12233344455554 3589999999999986
No 229
>PLN03127 Elongation factor Tu; Provisional
Probab=99.46 E-value=4.3e-13 Score=139.20 Aligned_cols=157 Identities=14% Similarity=0.129 Sum_probs=103.4
Q ss_pred CCcccEEEeeecccCCcceeeecccc------c----------cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQN------K----------FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~------~----------~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG 301 (452)
...++|+++|..++|||||+++|.+- . ...+...+++.+.....+ .....++.|+||||
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~-----~~~~~~i~~iDtPG 133 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEY-----ETAKRHYAHVDCPG 133 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEE-----cCCCeEEEEEECCC
Confidence 44688999999999999999998621 1 112233566666554443 34556788999999
Q ss_pred cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCCCcccH----HHHHH
Q psy14768 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPDRQVEI----NEIEA 376 (452)
Q Consensus 302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~----e~~~~ 376 (452)
+++|.......+..+|+++||+|++++..-++.+.+.. +.. .++| +|+|+||+|+.+.+... +++.+
T Consensus 134 h~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~-~~~-------~gip~iIvviNKiDlv~~~~~~~~i~~~i~~ 205 (447)
T PLN03127 134 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILL-ARQ-------VGVPSLVVFLNKVDVVDDEELLELVEMELRE 205 (447)
T ss_pred ccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHH-HHH-------cCCCeEEEEEEeeccCCHHHHHHHHHHHHHH
Confidence 99887666666778999999999998765555444333 222 2378 57899999997511111 23444
Q ss_pred HHHHcCC----CEEEEecCC---CCcc-------HHHHHHHHHHH
Q psy14768 377 VCHQYNF----MSWIEVSSK---EHLM-------IEDSMNFLVDR 407 (452)
Q Consensus 377 ~~~~~~~----~~~~evSAk---tg~n-------v~~lf~~i~~~ 407 (452)
+...+++ .+++.+||. +|.| +.++++.+...
T Consensus 206 ~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 206 LLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred HHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 5554443 458888886 4555 55666655544
No 230
>PLN03126 Elongation factor Tu; Provisional
Probab=99.46 E-value=4.8e-13 Score=139.63 Aligned_cols=148 Identities=16% Similarity=0.137 Sum_probs=102.5
Q ss_pred CCCcccEEEeeecccCCcceeeeccccc------c----------ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecC
Q psy14768 237 QIPTYPILITGDSTVGKTSYVQGFVQNK------F----------LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300 (452)
Q Consensus 237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~------~----------~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~Dta 300 (452)
....++|+++|..++|||||+++|+... . ..+...+++.+.....+. .+...+.|||||
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~-----~~~~~i~liDtP 152 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE-----TENRHYAHVDCP 152 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe-----cCCcEEEEEECC
Confidence 3456889999999999999999998411 0 112223444444433333 345578899999
Q ss_pred CcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCCC----cccHHHHH
Q psy14768 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPDR----QVEINEIE 375 (452)
Q Consensus 301 G~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~~----~~~~e~~~ 375 (452)
|+++|-......+..+|++|+|+|+.++..-+..+.|...... ++| +|+++||+|+.+. +...+++.
T Consensus 153 Gh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~--------gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~ 224 (478)
T PLN03126 153 GHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV--------GVPNMVVFLNKQDQVDDEELLELVELEVR 224 (478)
T ss_pred CHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--------CCCeEEEEEecccccCHHHHHHHHHHHHH
Confidence 9999987777778899999999999988665554444432222 377 7889999999751 11223556
Q ss_pred HHHHHcCC----CEEEEecCCCCccH
Q psy14768 376 AVCHQYNF----MSWIEVSSKEHLMI 397 (452)
Q Consensus 376 ~~~~~~~~----~~~~evSAktg~nv 397 (452)
.++...++ .+|+.+||.++.|+
T Consensus 225 ~~l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 225 ELLSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred HHHHhcCCCcCcceEEEEEccccccc
Confidence 66666543 45899999998654
No 231
>PRK00049 elongation factor Tu; Reviewed
Probab=99.46 E-value=5.5e-13 Score=136.84 Aligned_cols=146 Identities=15% Similarity=0.181 Sum_probs=99.8
Q ss_pred CCcccEEEeeecccCCcceeeecccccc----------------ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKF----------------LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~----------------~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG 301 (452)
...++|+++|..++|||||+++|+.... ..+...+++.+..... + ......+.|+||||
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~--~---~~~~~~i~~iDtPG 84 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVE--Y---ETEKRHYAHVDCPG 84 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEE--E---cCCCeEEEEEECCC
Confidence 4468899999999999999999985210 1122345555554333 2 34556788999999
Q ss_pred cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEE-EEEECCCCCCC-c---ccHHHHHH
Q psy14768 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL-LLASKCDLPDR-Q---VEINEIEA 376 (452)
Q Consensus 302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~pii-lV~NK~Dl~~~-~---~~~e~~~~ 376 (452)
+++|.......+..+|++++|+|+.++..-+..+.|.. +... ++|++ +++||+|+.+. + ...+++..
T Consensus 85 ~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~-~~~~-------g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~ 156 (396)
T PRK00049 85 HADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILL-ARQV-------GVPYIVVFLNKCDMVDDEELLELVEMEVRE 156 (396)
T ss_pred HHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHH-HHHc-------CCCEEEEEEeecCCcchHHHHHHHHHHHHH
Confidence 98887666677899999999999998765555444433 3322 37875 68999999741 1 12234555
Q ss_pred HHHHcCC----CEEEEecCCCCcc
Q psy14768 377 VCHQYNF----MSWIEVSSKEHLM 396 (452)
Q Consensus 377 ~~~~~~~----~~~~evSAktg~n 396 (452)
++..+++ .+++.+||+++.+
T Consensus 157 ~l~~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 157 LLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HHHhcCCCccCCcEEEeecccccC
Confidence 6665554 4689999999763
No 232
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.44 E-value=5.9e-13 Score=129.56 Aligned_cols=138 Identities=13% Similarity=0.162 Sum_probs=90.0
Q ss_pred cEEEeeecccCCcceeeeccccccc------------------cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFL------------------DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~------------------~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e 303 (452)
+|+++|.+|+|||||+++++...-. .+...+++.+.....+.+ ..+++.+|||||+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-----~~~~i~liDTPG~~ 75 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-----KDHRINIIDTPGHV 75 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-----CCEEEEEEECCCcH
Confidence 4899999999999999999731110 111223444444444433 46788899999998
Q ss_pred hhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C-cccHHHHHHHHHHc
Q psy14768 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R-QVEINEIEAVCHQY 381 (452)
Q Consensus 304 ~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~-~~~~e~~~~~~~~~ 381 (452)
.|...+..+++.+|++|+|+|+.++..-+....|.. +.. .++|+++|+||+|+.+ . ....+++++.....
T Consensus 76 df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~-~~~-------~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~ 147 (270)
T cd01886 76 DFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQ-ADR-------YNVPRIAFVNKMDRTGADFFRVVEQIREKLGAN 147 (270)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHH-HHH-------cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCC
Confidence 888888889999999999999998765554444433 222 2489999999999874 1 11223333333322
Q ss_pred CCCEEEEecCC
Q psy14768 382 NFMSWIEVSSK 392 (452)
Q Consensus 382 ~~~~~~evSAk 392 (452)
.+..++.+||.
T Consensus 148 ~~~~~~Pisa~ 158 (270)
T cd01886 148 PVPLQLPIGEE 158 (270)
T ss_pred ceEEEeccccC
Confidence 22334666665
No 233
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.44 E-value=4.9e-13 Score=139.95 Aligned_cols=152 Identities=13% Similarity=0.142 Sum_probs=99.6
Q ss_pred CCCcccEEEeeecccCCcceeeeccccc-ccccc-----------C---------------------CcceeeeEEEEEE
Q psy14768 237 QIPTYPILITGDSTVGKTSYVQGFVQNK-FLDNY-----------K---------------------NTVGVDFSTKLLS 283 (452)
Q Consensus 237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~-----------~---------------------~t~~~d~~~~~i~ 283 (452)
....++|+++|..++|||||+++|+... .+... . .+++.+.....+
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~- 102 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF- 102 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe-
Confidence 3456899999999999999999998532 11110 0 112233322222
Q ss_pred eeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCC
Q psy14768 284 HKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCD 363 (452)
Q Consensus 284 ~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~D 363 (452)
.....++.||||||++.|...+...+..+|++|||+|+.++..-+..+.+... ... ...++|||+||+|
T Consensus 103 ----~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~-~~l------g~~~iIvvvNKiD 171 (474)
T PRK05124 103 ----STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIA-TLL------GIKHLVVAVNKMD 171 (474)
T ss_pred ----ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHH-HHh------CCCceEEEEEeec
Confidence 44556789999999998876666667999999999999887544443333222 211 1257899999999
Q ss_pred CCC-CcccHH----HHHHHHHHcC---CCEEEEecCCCCccHHHH
Q psy14768 364 LPD-RQVEIN----EIEAVCHQYN---FMSWIEVSSKEHLMIEDS 400 (452)
Q Consensus 364 l~~-~~~~~e----~~~~~~~~~~---~~~~~evSAktg~nv~~l 400 (452)
+.+ .+...+ ++..+...++ ..+++.+||++|.|+.++
T Consensus 172 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 172 LVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred cccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 974 221122 2333344443 355899999999999865
No 234
>KOG0462|consensus
Probab=99.43 E-value=6.4e-13 Score=135.02 Aligned_cols=158 Identities=16% Similarity=0.211 Sum_probs=119.2
Q ss_pred ccEEEeeecccCCcceeeeccccc-cc--------------cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNK-FL--------------DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY 305 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~-~~--------------~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~ 305 (452)
-+++|+-.-.-|||||..+++... ++ .+..-+++....+..+.+ .+++.+.+.++||||+-.|
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify--~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFY--KDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEE--EcCCceEEEeecCCCcccc
Confidence 356788888999999999998411 11 123345555444444444 3578899999999999999
Q ss_pred hhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--CcccHHHHHHHHHHcCC
Q psy14768 306 ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--RQVEINEIEAVCHQYNF 383 (452)
Q Consensus 306 ~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--~~~~~e~~~~~~~~~~~ 383 (452)
+.-..+.+..||++|||+|++++.--|.+..++..++.. ..+|.|+||+|+.. .+....++.+++.....
T Consensus 139 s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~--------L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~ 210 (650)
T KOG0462|consen 139 SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAG--------LAIIPVLNKIDLPSADPERVENQLFELFDIPPA 210 (650)
T ss_pred cceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcC--------CeEEEeeeccCCCCCCHHHHHHHHHHHhcCCcc
Confidence 988888899999999999999999888888888888877 88999999999975 11222233333333333
Q ss_pred CEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768 384 MSWIEVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 384 ~~~~evSAktg~nv~~lf~~i~~~i~ 409 (452)
..+.+|||+|.|+.++|++|++.+-
T Consensus 211 -~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 211 -EVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred -ceEEEEeccCccHHHHHHHHHhhCC
Confidence 3799999999999999999988764
No 235
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.43 E-value=1.3e-12 Score=126.15 Aligned_cols=167 Identities=16% Similarity=0.174 Sum_probs=117.5
Q ss_pred cccCCCCCCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch--hhh
Q psy14768 230 YCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR--YIC 307 (452)
Q Consensus 230 ~~~l~~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~--~~~ 307 (452)
+..++..+.....|+|.|.||||||||++++.+........|.|+ +.+.+.+++.....+|++||||.-. ...
T Consensus 158 l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTT-----K~i~vGhfe~~~~R~QvIDTPGlLDRPl~E 232 (346)
T COG1084 158 LKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTT-----KGIHVGHFERGYLRIQVIDTPGLLDRPLEE 232 (346)
T ss_pred HhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccc-----cceeEeeeecCCceEEEecCCcccCCChHH
Confidence 566777777889999999999999999999998666555556554 4455555566677899999999421 111
Q ss_pred ---h---hhhhhcC-CCEEEEEEeCCCh--hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHH
Q psy14768 308 ---M---SRVYYQN-SDGCIIMFDLTNR--KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVC 378 (452)
Q Consensus 308 ---~---~~~~i~~-ad~vIlV~D~t~~--~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~ 378 (452)
+ ...+++. +++|+|+||.+.. -+.+....++.++...+ +.|+++|.||.|+.+ ....+++....
T Consensus 233 rN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f------~~p~v~V~nK~D~~~-~e~~~~~~~~~ 305 (346)
T COG1084 233 RNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF------KAPIVVVINKIDIAD-EEKLEEIEASV 305 (346)
T ss_pred hcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc------CCCeEEEEecccccc-hhHHHHHHHHH
Confidence 1 1122333 6899999999864 56777777888888762 389999999999875 22334444445
Q ss_pred HHcCCCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768 379 HQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 379 ~~~~~~~~~evSAktg~nv~~lf~~i~~~i 408 (452)
..-+......+++..+.+++.+-..+....
T Consensus 306 ~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 306 LEEGGEEPLKISATKGCGLDKLREEVRKTA 335 (346)
T ss_pred HhhccccccceeeeehhhHHHHHHHHHHHh
Confidence 555555578888888888887666665553
No 236
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.43 E-value=7.2e-13 Score=115.25 Aligned_cols=136 Identities=24% Similarity=0.293 Sum_probs=97.9
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc----chhhhhhhhhhcCCC
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ----DRYICMSRVYYQNSD 317 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~----e~~~~~~~~~i~~ad 317 (452)
||.++|+.++|||||+++|.+.... +..|....+. =.++||||- ..|..-......+||
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~~~---------------~~~IDTPGEyiE~~~~y~aLi~ta~dad 65 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIEYY---------------DNTIDTPGEYIENPRFYHALIVTAQDAD 65 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC--cCccceeEec---------------ccEEECChhheeCHHHHHHHHHHHhhCC
Confidence 7899999999999999999875542 2222221111 125799993 223322233456999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
++++|.|++++.+.-.= .+.. .-.+|+|=|+||+|+.......+..+++++..|+...|++|+.+|+||
T Consensus 66 ~V~ll~dat~~~~~~pP-----~fa~------~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi 134 (143)
T PF10662_consen 66 VVLLLQDATEPRSVFPP-----GFAS------MFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGI 134 (143)
T ss_pred EEEEEecCCCCCccCCc-----hhhc------ccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCH
Confidence 99999999987432111 1111 124899999999999854567788889999999998999999999999
Q ss_pred HHHHHHHH
Q psy14768 398 EDSMNFLV 405 (452)
Q Consensus 398 ~~lf~~i~ 405 (452)
++|.+.|-
T Consensus 135 ~eL~~~L~ 142 (143)
T PF10662_consen 135 EELKDYLE 142 (143)
T ss_pred HHHHHHHh
Confidence 99998874
No 237
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=4.4e-12 Score=129.89 Aligned_cols=159 Identities=13% Similarity=0.196 Sum_probs=124.1
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCC-eeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG-RPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~-~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..-|+++|.-..|||||+..+-+.........+++..+....+.. +. ..-.+.|+||||++.|..|+.+-.+-+|+
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~---~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI 81 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPL---DVIKIPGITFIDTPGHEAFTAMRARGASVTDI 81 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEe---ccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence 456889999999999999999988888888899999999888877 42 23467788999999999999998999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCC--------CEEEEec
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNF--------MSWIEVS 390 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~--------~~~~evS 390 (452)
+|||+|++++.-=|.++ .+... ...+.|++++.||+|..+ ...+.+..-..+.++ ..|+.+|
T Consensus 82 aILVVa~dDGv~pQTiE----AI~ha----k~a~vP~iVAiNKiDk~~--~np~~v~~el~~~gl~~E~~gg~v~~VpvS 151 (509)
T COG0532 82 AILVVAADDGVMPQTIE----AINHA----KAAGVPIVVAINKIDKPE--ANPDKVKQELQEYGLVPEEWGGDVIFVPVS 151 (509)
T ss_pred EEEEEEccCCcchhHHH----HHHHH----HHCCCCEEEEEecccCCC--CCHHHHHHHHHHcCCCHhhcCCceEEEEee
Confidence 99999999975444432 23222 345699999999999985 223333333333333 3479999
Q ss_pred CCCCccHHHHHHHHHHHHHHh
Q psy14768 391 SKEHLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 391 Aktg~nv~~lf~~i~~~i~~~ 411 (452)
|++|.|+.+|+..++-.....
T Consensus 152 A~tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 152 AKTGEGIDELLELILLLAEVL 172 (509)
T ss_pred ccCCCCHHHHHHHHHHHHHHH
Confidence 999999999999988776655
No 238
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.41 E-value=1.4e-12 Score=126.86 Aligned_cols=114 Identities=11% Similarity=0.189 Sum_probs=78.6
Q ss_pred cEEEeeecccCCcceeeecccc-cccccc--------CCcc-----------eeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768 242 PILITGDSTVGKTSYVQGFVQN-KFLDNY--------KNTV-----------GVDFSTKLLSHKKYGGRPVKLQIWDIAG 301 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~-~~~~~~--------~~t~-----------~~d~~~~~i~~~~~~~~~~~l~l~DtaG 301 (452)
+|+++|.+|+|||||+++++.. ..+... ..++ +.++......+ ..+.+.+.+|||+|
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~---~~~~~~i~liDTPG 80 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQF---EYRDCVINLLDTPG 80 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEE---eeCCEEEEEEECCC
Confidence 5899999999999999999742 111110 0111 11222222233 55778899999999
Q ss_pred cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366 (452)
Q Consensus 302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~ 366 (452)
+.+|......+++.+|++|+|+|++++...+.. .++..... .++|+++++||+|+..
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~-~i~~~~~~-------~~~P~iivvNK~D~~~ 137 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTR-KLFEVCRL-------RGIPIITFINKLDREG 137 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCccHHHH-HHHHHHHh-------cCCCEEEEEECCccCC
Confidence 999887777788999999999999987543332 23332222 3589999999999864
No 239
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.41 E-value=6.9e-13 Score=144.01 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=98.6
Q ss_pred CcccEEEeeecccCCcceeeeccccc-ccccc----------CCc----------------------ceeeeEEEEEEee
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNK-FLDNY----------KNT----------------------VGVDFSTKLLSHK 285 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~----------~~t----------------------~~~d~~~~~i~~~ 285 (452)
..++|+++|.+|+|||||+++|+... .+... ..+ ++.+.....+
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~--- 99 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF--- 99 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE---
Confidence 35789999999999999999999632 22210 111 2222222222
Q ss_pred ecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768 286 KYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365 (452)
Q Consensus 286 ~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~ 365 (452)
......+.|+||||+++|...+...+..+|++|||+|++++..-+..+.+.. +... ..+++|||+||+|+.
T Consensus 100 --~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~-~~~~------~~~~iivvvNK~D~~ 170 (632)
T PRK05506 100 --ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFI-ASLL------GIRHVVLAVNKMDLV 170 (632)
T ss_pred --ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHH-HHHh------CCCeEEEEEEecccc
Confidence 3345578899999999887666667899999999999988755444333322 2221 226789999999997
Q ss_pred C-Ccc----cHHHHHHHHHHcCC--CEEEEecCCCCccHHH
Q psy14768 366 D-RQV----EINEIEAVCHQYNF--MSWIEVSSKEHLMIED 399 (452)
Q Consensus 366 ~-~~~----~~e~~~~~~~~~~~--~~~~evSAktg~nv~~ 399 (452)
+ .+. ..+++.++...+++ .+++.+||++|.|+.+
T Consensus 171 ~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 171 DYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 4 111 11233344556665 3489999999999974
No 240
>KOG1707|consensus
Probab=99.39 E-value=2.5e-13 Score=139.14 Aligned_cols=168 Identities=15% Similarity=0.198 Sum_probs=122.5
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|+.|+|||||+-.++.+.|+....+-.. .......+ ....+...|+||...+.-+.-...-+++||
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadv---tPe~vpt~ivD~ss~~~~~~~l~~EirkA~ 81 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADV---TPENVPTSIVDTSSDSDDRLCLRKEIRKAD 81 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCcc---CcCcCceEEEecccccchhHHHHHHHhhcC
Confidence 4568999999999999999999999888765433221 11111222 334556788999865443333356689999
Q ss_pred EEEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHH-HHHHHHHcC-CCEEEEecCCC
Q psy14768 318 GCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINE-IEAVCHQYN-FMSWIEVSSKE 393 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~-~~~~~~~~~-~~~~~evSAkt 393 (452)
++++||+++++.|.+.+. .|+-.+++..+ ...++||||||||+|..+ ...+.+. ..-+...+. +...++|||++
T Consensus 82 vi~lvyavd~~~T~D~ist~WLPlir~~~~--~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~ 159 (625)
T KOG1707|consen 82 VICLVYAVDDESTVDRISTKWLPLIRQLFG--DYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALT 159 (625)
T ss_pred EEEEEEecCChHHhhhhhhhhhhhhhcccC--CCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhh
Confidence 999999999999999996 59999988731 236899999999999987 2222222 344444432 33469999999
Q ss_pred CccHHHHHHHHHHHHHHhh
Q psy14768 394 HLMIEDSMNFLVDRIICSK 412 (452)
Q Consensus 394 g~nv~~lf~~i~~~i~~~~ 412 (452)
-.|+.++|..+.++++..-
T Consensus 160 ~~n~~e~fYyaqKaVihPt 178 (625)
T KOG1707|consen 160 LANVSELFYYAQKAVIHPT 178 (625)
T ss_pred hhhhHhhhhhhhheeeccC
Confidence 9999999999999888763
No 241
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.39 E-value=2.2e-12 Score=119.89 Aligned_cols=163 Identities=18% Similarity=0.212 Sum_probs=97.2
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh-----hhhhhhc
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC-----MSRVYYQ 314 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~-----~~~~~i~ 314 (452)
+++|+++|++|+|||||+|.+++..........++..-......... ......+.+|||+|...... +....+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYP-HPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeee-cCCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 36899999999999999999998544322222222100000100000 11123688999999754321 2223367
Q ss_pred CCCEEEEEEeCCChhhHHHH-HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cc-----------ccHHHHHHHHH--
Q psy14768 315 NSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQ-----------VEINEIEAVCH-- 379 (452)
Q Consensus 315 ~ad~vIlV~D~t~~~S~~~~-~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~-----------~~~e~~~~~~~-- 379 (452)
++|++++|.|. . |... ..|+..+... ++|+++|+||+|+.. .. ...+++.+.+.
T Consensus 80 ~~d~~l~v~~~--~--~~~~d~~~~~~l~~~-------~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 148 (197)
T cd04104 80 EYDFFIIISST--R--FSSNDVKLAKAIQCM-------GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLEN 148 (197)
T ss_pred CcCEEEEEeCC--C--CCHHHHHHHHHHHHh-------CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHH
Confidence 88999998542 2 3333 2345555443 489999999999853 11 01111222221
Q ss_pred --H--cCCCEEEEecCC--CCccHHHHHHHHHHHHHHhhhh
Q psy14768 380 --Q--YNFMSWIEVSSK--EHLMIEDSMNFLVDRIICSKRM 414 (452)
Q Consensus 380 --~--~~~~~~~evSAk--tg~nv~~lf~~i~~~i~~~~~~ 414 (452)
. ....++|-+|+. .+.++..+.+.++..+-+.++.
T Consensus 149 ~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 149 LQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred HHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence 2 234568999998 5789999999999988876553
No 242
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.39 E-value=3.9e-12 Score=126.26 Aligned_cols=164 Identities=17% Similarity=0.219 Sum_probs=99.3
Q ss_pred EEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEee------------------ecCC-eeEEEEEEecCCc-
Q psy14768 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK------------------KYGG-RPVKLQIWDIAGQ- 302 (452)
Q Consensus 243 I~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~------------------~~~~-~~~~l~l~DtaG~- 302 (452)
|+++|.||||||||+|++++........|.++.+...-...+. ..++ ..+.+++|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5799999999999999999876543333333322211111100 0022 3478999999997
Q ss_pred ---chhhhhhhhh---hcCCCEEEEEEeCCCh-------------hhHHHHHHHHHHHHh--------------------
Q psy14768 303 ---DRYICMSRVY---YQNSDGCIIMFDLTNR-------------KSFESVVQWKHDLDS-------------------- 343 (452)
Q Consensus 303 ---e~~~~~~~~~---i~~ad~vIlV~D~t~~-------------~S~~~~~~~~~~i~~-------------------- 343 (452)
+++..+...+ +++||++++|+|++.. ...+++.....++..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5555555554 9999999999999731 011122111111100
Q ss_pred ------------------------hh---h------------------hcCCCCCcEEEEEECCCCCCCcccHHHHHHHH
Q psy14768 344 ------------------------KC---I------------------LDNGAMLPCLLLASKCDLPDRQVEINEIEAVC 378 (452)
Q Consensus 344 ------------------------~~---~------------------~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~ 378 (452)
.. . ......+|+|+|+||.|+.+.. +....+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~---~~~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAE---NNISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChH---HHHHHHH
Confidence 00 0 0012358999999999985421 1222333
Q ss_pred HHcCCCEEEEecCCCCccHHHHHH-HHHHHHH
Q psy14768 379 HQYNFMSWIEVSSKEHLMIEDSMN-FLVDRII 409 (452)
Q Consensus 379 ~~~~~~~~~evSAktg~nv~~lf~-~i~~~i~ 409 (452)
....+..++.+||+.+.++.++.+ .+++.+-
T Consensus 238 ~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lP 269 (318)
T cd01899 238 LKYPDEIVVPTSAEAELALRRAAKQGLIKYDP 269 (318)
T ss_pred hhCCCCeEEEEeCcccccHHHHHHhhHHHhCC
Confidence 444455689999999999999997 4776653
No 243
>KOG1489|consensus
Probab=99.39 E-value=1.7e-12 Score=124.44 Aligned_cols=158 Identities=17% Similarity=0.188 Sum_probs=112.5
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh----hhh---hhh
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC----MSR---VYY 313 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~----~~~---~~i 313 (452)
..+.++|.||+|||||+|++...+--+...+.|+..-..-++.+ ++ ..++.+-|.||.-+-.. +-. .-+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~y---dd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHi 272 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNY---DD-FSQITVADIPGIIEGAHMNKGLGYKFLRHI 272 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeec---cc-cceeEeccCccccccccccCcccHHHHHHH
Confidence 56789999999999999999974433333343333222223333 32 23477889999643221 112 347
Q ss_pred cCCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEec
Q psy14768 314 QNSDGCIIMFDLTNR---KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVS 390 (452)
Q Consensus 314 ~~ad~vIlV~D~t~~---~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evS 390 (452)
++++..++|+|++.+ .-++.++.+..+++.+ .....++|.+||+||+|+.+. ..+.+.++.+.+.....+.+|
T Consensus 273 ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~y--ek~L~~rp~liVaNKiD~~ea--e~~~l~~L~~~lq~~~V~pvs 348 (366)
T KOG1489|consen 273 ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELY--EKGLADRPALIVANKIDLPEA--EKNLLSSLAKRLQNPHVVPVS 348 (366)
T ss_pred HhhceEEEEEECCCcccCCHHHHHHHHHHHHHHH--hhhhccCceEEEEeccCchhH--HHHHHHHHHHHcCCCcEEEee
Confidence 889999999999998 7788888877777766 223468999999999998642 233357788888766689999
Q ss_pred CCCCccHHHHHHHHHH
Q psy14768 391 SKEHLMIEDSMNFLVD 406 (452)
Q Consensus 391 Aktg~nv~~lf~~i~~ 406 (452)
|++++++.+++..+.+
T Consensus 349 A~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 349 AKSGEGLEELLNGLRE 364 (366)
T ss_pred eccccchHHHHHHHhh
Confidence 9999999999987754
No 244
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.38 E-value=3.8e-12 Score=134.58 Aligned_cols=115 Identities=11% Similarity=0.167 Sum_probs=78.7
Q ss_pred cccEEEeeecccCCcceeeecccc-cccc----------------ccCC---cceeeeEEEEEEeeecCCeeEEEEEEec
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQN-KFLD----------------NYKN---TVGVDFSTKLLSHKKYGGRPVKLQIWDI 299 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~-~~~~----------------~~~~---t~~~d~~~~~i~~~~~~~~~~~l~l~Dt 299 (452)
.-+|+|+|.+++|||||+++++.. ..+. ++.+ ..+..+......+ ..+.+.+.+|||
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~---~~~~~~inliDT 86 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQF---PYRDCLINLLDT 86 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEE---EECCEEEEEEEC
Confidence 458999999999999999999731 1110 0000 0122222222233 446688999999
Q ss_pred CCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365 (452)
Q Consensus 300 aG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~ 365 (452)
||+..|......+++.+|++|+|+|++++...+....| ..... .++|+++++||+|+.
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~-~~~~~-------~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLM-EVCRL-------RDTPIFTFINKLDRD 144 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHH-HHHHh-------cCCCEEEEEECCccc
Confidence 99999988777889999999999999987544433333 22222 359999999999974
No 245
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.37 E-value=3.2e-12 Score=124.56 Aligned_cols=143 Identities=15% Similarity=0.201 Sum_probs=92.4
Q ss_pred cEEEeeecccCCcceeeecccccccccc-----CC-------------cceeeeEEEEEEeeecCCeeEEEEEEecCCcc
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNY-----KN-------------TVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~-----~~-------------t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e 303 (452)
+|+++|.+|+|||||+++++........ .. +.+.......+ ....+.+.+|||+|+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~-----~~~~~~i~liDtPG~~ 75 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPL-----EWKGHKINLIDTPGYA 75 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEE-----EECCEEEEEEECcCHH
Confidence 4789999999999999998742211100 00 11111111222 3345778999999998
Q ss_pred hhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCC
Q psy14768 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNF 383 (452)
Q Consensus 304 ~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~ 383 (452)
.|...+..++..+|++|+|+|++++...+....|.. +.. .++|+++|+||+|+... ...+....+.+.++.
T Consensus 76 ~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~-~~~-------~~~p~iivvNK~D~~~~-~~~~~~~~l~~~~~~ 146 (268)
T cd04170 76 DFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEF-ADE-------AGIPRIIFINKMDRERA-DFDKTLAALQEAFGR 146 (268)
T ss_pred HHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHH-HHH-------cCCCEEEEEECCccCCC-CHHHHHHHHHHHhCC
Confidence 888778888999999999999998876665555543 222 24899999999998742 223445555555555
Q ss_pred CEE-EEecCCCCccHH
Q psy14768 384 MSW-IEVSSKEHLMIE 398 (452)
Q Consensus 384 ~~~-~evSAktg~nv~ 398 (452)
..+ +.+...++.++.
T Consensus 147 ~~~~~~ip~~~~~~~~ 162 (268)
T cd04170 147 PVVPLQLPIGEGDDFK 162 (268)
T ss_pred CeEEEEecccCCCcee
Confidence 312 344455544443
No 246
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.37 E-value=1.1e-12 Score=136.17 Aligned_cols=149 Identities=12% Similarity=0.143 Sum_probs=101.4
Q ss_pred CCcccEEEeeecccCCcceeeecccccc-------------------------------ccccCCcceeeeEEEEEEeee
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKF-------------------------------LDNYKNTVGVDFSTKLLSHKK 286 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~-------------------------------~~~~~~t~~~d~~~~~i~~~~ 286 (452)
...++|+++|..++|||||+.+|+...- ..+...+++.+.....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~----- 79 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWK----- 79 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEE-----
Confidence 4467899999999999999988873110 0111123333333222
Q ss_pred cCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHH-------HHHHHHHHHHhhhhhcCCCCC-cEEEE
Q psy14768 287 YGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFE-------SVVQWKHDLDSKCILDNGAML-PCLLL 358 (452)
Q Consensus 287 ~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~-------~~~~~~~~i~~~~~~~~~~~~-piilV 358 (452)
+......+.|+||||+++|...+...+..+|++|||+|++++ .|+ .....+..+.. .++ ++|||
T Consensus 80 ~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~-------~gi~~iIV~ 151 (447)
T PLN00043 80 FETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT-------LGVKQMICC 151 (447)
T ss_pred ecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH-------cCCCcEEEE
Confidence 255667889999999999998888889999999999999974 232 22222222222 235 57889
Q ss_pred EECCCCCCC-------cccHHHHHHHHHHcCC----CEEEEecCCCCccHHH
Q psy14768 359 ASKCDLPDR-------QVEINEIEAVCHQYNF----MSWIEVSSKEHLMIED 399 (452)
Q Consensus 359 ~NK~Dl~~~-------~~~~e~~~~~~~~~~~----~~~~evSAktg~nv~~ 399 (452)
+||.|+.+. ....++++.++.+.++ .+|+++||++|+|+.+
T Consensus 152 vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 152 CNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 999998631 1224567777777774 4589999999999854
No 247
>PRK13351 elongation factor G; Reviewed
Probab=99.37 E-value=3.3e-12 Score=140.10 Aligned_cols=114 Identities=14% Similarity=0.204 Sum_probs=83.0
Q ss_pred cccEEEeeecccCCcceeeecccccc-------------ccccC-----CcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKF-------------LDNYK-----NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~-------------~~~~~-----~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG 301 (452)
..+|+|+|..++|||||+++|+...- ..++. .+++.......+ ......+.+|||+|
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~-----~~~~~~i~liDtPG 82 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSC-----DWDNHRINLIDTPG 82 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEE-----EECCEEEEEEECCC
Confidence 46899999999999999999974211 00000 111122222222 33567899999999
Q ss_pred cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366 (452)
Q Consensus 302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~ 366 (452)
+..|...+..+++.+|++|+|+|++++..++....|..... .++|+++|+||+|+..
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~--------~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADR--------YGIPRLIFINKMDRVG 139 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--------cCCCEEEEEECCCCCC
Confidence 99998888899999999999999999888877666644222 2489999999999863
No 248
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.35 E-value=3.4e-12 Score=132.72 Aligned_cols=149 Identities=11% Similarity=0.087 Sum_probs=100.2
Q ss_pred CCcccEEEeeecccCCcceeeecccccc-------------------------------ccccCCcceeeeEEEEEEeee
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKF-------------------------------LDNYKNTVGVDFSTKLLSHKK 286 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~-------------------------------~~~~~~t~~~d~~~~~i~~~~ 286 (452)
...++|+++|..++|||||+.+|+...- ..+...+++.+.....+
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~---- 80 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF---- 80 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE----
Confidence 4567899999999999999998874110 01112233444433322
Q ss_pred cCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhh-------HHHHHHHHHHHHhhhhhcCCCCCc-EEEE
Q psy14768 287 YGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKS-------FESVVQWKHDLDSKCILDNGAMLP-CLLL 358 (452)
Q Consensus 287 ~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S-------~~~~~~~~~~i~~~~~~~~~~~~p-iilV 358 (452)
......+.|+||||+++|...+...+..+|++|||+|++++.. -+..+.|...... ++| +|++
T Consensus 81 -~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~--------gi~~iiv~ 151 (446)
T PTZ00141 81 -ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL--------GVKQMIVC 151 (446)
T ss_pred -ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc--------CCCeEEEE
Confidence 4566788899999999998877888899999999999997641 1333334332222 355 7899
Q ss_pred EECCCCC--C-C----cccHHHHHHHHHHcCC----CEEEEecCCCCccHHH
Q psy14768 359 ASKCDLP--D-R----QVEINEIEAVCHQYNF----MSWIEVSSKEHLMIED 399 (452)
Q Consensus 359 ~NK~Dl~--~-~----~~~~e~~~~~~~~~~~----~~~~evSAktg~nv~~ 399 (452)
+||+|.. + . ....+++.+++...++ .+|+.+||.+|+|+.+
T Consensus 152 vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 152 INKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 9999943 2 1 2223445555555555 4589999999999864
No 249
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.33 E-value=7e-12 Score=122.45 Aligned_cols=139 Identities=15% Similarity=0.231 Sum_probs=90.8
Q ss_pred cccEEEeeecccCCcceeeeccccccccc----------cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh----
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDN----------YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY---- 305 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~----------~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~---- 305 (452)
.++|+++|.+|+|||||+|++++..+... ...|++.+.....+.. ++..+.+.+|||+|...+
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~---~g~~~~l~iiDTpGfgd~~~~~ 80 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEE---NGVKLKLTVIDTPGFGDNINNS 80 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEE---CCEEEEEEEEecCCccccccch
Confidence 47899999999999999999998766543 3445555665556655 777889999999993221
Q ss_pred --------------h--------hhhhhhhc--CCCEEEEEEeCCC-hhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEE
Q psy14768 306 --------------I--------CMSRVYYQ--NSDGCIIMFDLTN-RKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360 (452)
Q Consensus 306 --------------~--------~~~~~~i~--~ad~vIlV~D~t~-~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~N 360 (452)
. ..+...+. ++|+++++++.+. ..+-.+++ .+..+.. .+|+++|+|
T Consensus 81 ~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~-~lk~l~~--------~v~vi~Vin 151 (276)
T cd01850 81 DCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIE-FMKRLSK--------RVNIIPVIA 151 (276)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHH-HHHHHhc--------cCCEEEEEE
Confidence 0 11112233 4678888888764 22222222 2222322 389999999
Q ss_pred CCCCCC---CcccHHHHHHHHHHcCCCEEEEecC
Q psy14768 361 KCDLPD---RQVEINEIEAVCHQYNFMSWIEVSS 391 (452)
Q Consensus 361 K~Dl~~---~~~~~e~~~~~~~~~~~~~~~evSA 391 (452)
|+|+.. .....+.+.+.+...++. +|....
T Consensus 152 K~D~l~~~e~~~~k~~i~~~l~~~~i~-~~~~~~ 184 (276)
T cd01850 152 KADTLTPEELKEFKQRIMEDIEEHNIK-IYKFPE 184 (276)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHcCCc-eECCCC
Confidence 999965 233455677777777876 555444
No 250
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.33 E-value=1.4e-11 Score=123.59 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=122.4
Q ss_pred cEEEeeecccCCcceeeeccccc---------------cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNK---------------FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI 306 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~---------------~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~ 306 (452)
+.+|+-.-..|||||..|++... ...+...+++.-.....+.+..-+++.+.++|+||||+-.|.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 35577777889999999998421 112234466666666666665557788999999999998887
Q ss_pred hhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCC--
Q psy14768 307 CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFM-- 384 (452)
Q Consensus 307 ~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~-- 384 (452)
--..+.+..|.++|||+|++++..-|.+...+..+++. .-+|-|+||+||.. .......+++-.-+|+.
T Consensus 91 YEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~--------LeIiPViNKIDLP~-Adpervk~eIe~~iGid~~ 161 (603)
T COG0481 91 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENN--------LEIIPVLNKIDLPA-ADPERVKQEIEDIIGIDAS 161 (603)
T ss_pred EEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcC--------cEEEEeeecccCCC-CCHHHHHHHHHHHhCCCcc
Confidence 66677889999999999999999999998888888877 78999999999975 11222334444455553
Q ss_pred EEEEecCCCCccHHHHHHHHHHHHH
Q psy14768 385 SWIEVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 385 ~~~evSAktg~nv~~lf~~i~~~i~ 409 (452)
..+.+|||+|.||++++++|++.+-
T Consensus 162 dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 162 DAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred hheeEecccCCCHHHHHHHHHhhCC
Confidence 3589999999999999999988764
No 251
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.32 E-value=4.6e-12 Score=138.81 Aligned_cols=140 Identities=11% Similarity=0.199 Sum_probs=96.4
Q ss_pred ccEEEeeecccCCcceeeeccccc-cc---c--------------ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNK-FL---D--------------NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~-~~---~--------------~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~ 302 (452)
-+|+|+|.+|+|||||+++|+... .+ . +...+++.+.....+.+ ....+.||||+|+
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-----~~~~i~liDTPG~ 85 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-----KGHRINIIDTPGH 85 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-----CCeEEEEEECCCC
Confidence 479999999999999999997411 11 0 01234455555555544 4578899999999
Q ss_pred chhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcC
Q psy14768 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYN 382 (452)
Q Consensus 303 e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~ 382 (452)
.+|...+..+++.+|++|+|+|++++...+....|.. +.. .++|++||+||+|+.... ..+...++...++
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~-~~~-------~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l~ 156 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQ-ANR-------YEVPRIAFVNKMDKTGAN-FLRVVNQIKQRLG 156 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHH-HHH-------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhC
Confidence 9888777888999999999999999877776655543 222 248999999999997511 2333445555554
Q ss_pred CCE---EEEecCCCC
Q psy14768 383 FMS---WIEVSSKEH 394 (452)
Q Consensus 383 ~~~---~~evSAktg 394 (452)
... .+.+||..+
T Consensus 157 ~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 157 ANAVPIQLPIGAEDN 171 (689)
T ss_pred CCceeEEeccccCCC
Confidence 432 355555544
No 252
>PRK12739 elongation factor G; Reviewed
Probab=99.31 E-value=1.3e-11 Score=135.22 Aligned_cols=114 Identities=17% Similarity=0.225 Sum_probs=85.4
Q ss_pred cccEEEeeecccCCcceeeecccc-----cc--c-----------cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQN-----KF--L-----------DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~-----~~--~-----------~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG 301 (452)
..+|+|+|.+|+|||||+++|+.. +. + .+...+++.+.....+.+ ...++.||||||
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-----~~~~i~liDTPG 82 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-----KGHRINIIDTPG 82 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-----CCEEEEEEcCCC
Confidence 357999999999999999999742 11 0 012345555555555554 456788999999
Q ss_pred cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366 (452)
Q Consensus 302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~ 366 (452)
+..|...+..+++.+|++|+|+|+.++..-++...|...... ++|+|+++||||+..
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~--------~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY--------GVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc--------CCCEEEEEECCCCCC
Confidence 988887788889999999999999998776666555543333 389999999999863
No 253
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.29 E-value=2.9e-11 Score=127.88 Aligned_cols=116 Identities=13% Similarity=0.208 Sum_probs=78.9
Q ss_pred CcccEEEeeecccCCcceeeeccc-cccccc----------------cC---CcceeeeEEEEEEeeecCCeeEEEEEEe
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQ-NKFLDN----------------YK---NTVGVDFSTKLLSHKKYGGRPVKLQIWD 298 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~-~~~~~~----------------~~---~t~~~d~~~~~i~~~~~~~~~~~l~l~D 298 (452)
...+|+|+|.+++|||||+++++. ...+.. +. ...+..+......+ +.+.+.+.+||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~---~~~~~~inliD 86 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQF---PYRDCLVNLLD 86 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEE---eeCCeEEEEEE
Confidence 346899999999999999999863 111110 00 01122233333333 55678899999
Q ss_pred cCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365 (452)
Q Consensus 299 taG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~ 365 (452)
|+|+..|......+++.+|++|+|+|+++...-+. +.++..... .++|+++|+||+|+.
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t-~~l~~~~~~-------~~~PiivviNKiD~~ 145 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRT-RKLMEVTRL-------RDTPIFTFMNKLDRD 145 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh-------cCCCEEEEEECcccc
Confidence 99999888767778999999999999998643222 233333322 358999999999973
No 254
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.29 E-value=1.6e-11 Score=116.18 Aligned_cols=161 Identities=17% Similarity=0.213 Sum_probs=101.9
Q ss_pred cEEEeeecccCCcceeeeccccccccc---cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh-----hhhhhh
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDN---YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC-----MSRVYY 313 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~---~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~-----~~~~~i 313 (452)
||+++|+.++||||+.+.+..+....+ ..+|+. .....+. ....+.+.+||++||..+-. .+...+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~--ve~~~v~----~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if 74 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTID--VEKSHVR----FLSFLPLNIWDCPGQDDFMENYFNSQREEIF 74 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----S--EEEEEEE----CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCC--ceEEEEe----cCCCcEEEEEEcCCccccccccccccHHHHH
Confidence 689999999999998877765432211 123333 3333332 23456899999999975433 456789
Q ss_pred cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---Ccc----cHHHHHHHHHHcC--CC
Q psy14768 314 QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQV----EINEIEAVCHQYN--FM 384 (452)
Q Consensus 314 ~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~----~~e~~~~~~~~~~--~~ 384 (452)
++++++|+|+|+....-.+++..+...+.... ...+++.+-++++|+|+.. +.. ..+.+.+.+...+ ..
T Consensus 75 ~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~--~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~ 152 (232)
T PF04670_consen 75 SNVGVLIYVFDAQSDDYDEDLAYLSDCIEALR--QYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDI 152 (232)
T ss_dssp CTESEEEEEEETT-STCHHHHHHHHHHHHHHH--HHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSE
T ss_pred hccCEEEEEEEcccccHHHHHHHHHHHHHHHH--HhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccce
Confidence 99999999999996666677766666555442 2357889999999999975 222 2223344444445 13
Q ss_pred EEEEecCCCCccHHHHHHHHHHHHHHh
Q psy14768 385 SWIEVSSKEHLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 385 ~~~evSAktg~nv~~lf~~i~~~i~~~ 411 (452)
.|+.||-.+ +.+.++|..+++.++-.
T Consensus 153 ~~~~TSI~D-~Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 153 TFFLTSIWD-ESLYEAWSKIVQKLIPN 178 (232)
T ss_dssp EEEEE-TTS-THHHHHHHHHHHTTSTT
T ss_pred EEEeccCcC-cHHHHHHHHHHHHHccc
Confidence 367777775 68999999999887744
No 255
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.29 E-value=1.5e-11 Score=103.98 Aligned_cols=106 Identities=19% Similarity=0.156 Sum_probs=70.1
Q ss_pred cEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh---h------hhhhh
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY---I------CMSRV 311 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~---~------~~~~~ 311 (452)
+|+++|.+|+|||||+|.|++.. ......+..+.......+.+ ++. .+.|+||+|...- . .....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~---~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~ 75 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY---NNK--KFILVDTPGINDGESQDNDGKEIRKFLE 75 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE---TTE--EEEEEESSSCSSSSHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee---cee--eEEEEeCCCCcccchhhHHHHHHHHHHH
Confidence 58999999999999999999853 33444455555554444444 444 4568999996321 1 11223
Q ss_pred hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEEC
Q psy14768 312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361 (452)
Q Consensus 312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK 361 (452)
.+..+|++++|+|+++... +....++..++. ++|+++|+||
T Consensus 76 ~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~~--------~~~~i~v~NK 116 (116)
T PF01926_consen 76 QISKSDLIIYVVDASNPIT-EDDKNILRELKN--------KKPIILVLNK 116 (116)
T ss_dssp HHCTESEEEEEEETTSHSH-HHHHHHHHHHHT--------TSEEEEEEES
T ss_pred HHHHCCEEEEEEECCCCCC-HHHHHHHHHHhc--------CCCEEEEEcC
Confidence 4589999999999887433 222333344433 4999999998
No 256
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.29 E-value=1.8e-11 Score=118.86 Aligned_cols=167 Identities=13% Similarity=0.080 Sum_probs=112.4
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh----hhh---hhhh
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI----CMS---RVYY 313 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~----~~~---~~~i 313 (452)
..|.++|.||+|||||++.+..-+--....+.|+..-.--.+.+ .....|.+-|.||.-+-. -+- -.-+
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~----~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHI 235 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV----DGGESFVVADIPGLIEGASEGVGLGLRFLRHI 235 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe----cCCCcEEEecCcccccccccCCCccHHHHHHH
Confidence 56789999999999999999974333222343333222212222 122346677999953211 111 2347
Q ss_pred cCCCEEEEEEeCCChhh---HHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEe
Q psy14768 314 QNSDGCIIMFDLTNRKS---FESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEV 389 (452)
Q Consensus 314 ~~ad~vIlV~D~t~~~S---~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~ev 389 (452)
+++.+++.|+|++.... .++......+++.+ .....++|.+||+||+|+.. .+...+..+.+.+..++..++++
T Consensus 236 ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y--~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~I 313 (369)
T COG0536 236 ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKY--SPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLI 313 (369)
T ss_pred HhhheeEEEEecCcccCCCHHHHHHHHHHHHHHh--hHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceee
Confidence 78999999999986653 67777777777776 22456899999999999654 33334444555555565534449
Q ss_pred cCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 390 SSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
||.++++++++...+.+.+.+...
T Consensus 314 Sa~t~~g~~~L~~~~~~~l~~~~~ 337 (369)
T COG0536 314 SALTREGLDELLRALAELLEETKA 337 (369)
T ss_pred ehhcccCHHHHHHHHHHHHHHhhh
Confidence 999999999999999999888764
No 257
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.28 E-value=1.5e-11 Score=127.67 Aligned_cols=164 Identities=15% Similarity=0.198 Sum_probs=105.8
Q ss_pred CCcccEEEeeecccCCcceeeeccc---cccccccCCcceeeeEEEEEE------------eeecCC-------------
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQ---NKFLDNYKNTVGVDFSTKLLS------------HKKYGG------------- 289 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~---~~~~~~~~~t~~~d~~~~~i~------------~~~~~~------------- 289 (452)
...+.|+++|.-..|||||+..|.+ .++..+...+++.+....... +..+..
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 4568899999999999999999986 233333333333322211110 000000
Q ss_pred ---eeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768 290 ---RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNR-KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365 (452)
Q Consensus 290 ---~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~-~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~ 365 (452)
....+.|+||||++.|-..+...+..+|+++||+|+.++ ..-+..+.+. .+... .-.++|||+||+|+.
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l------gi~~iIVvlNKiDlv 184 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM------KLKHIIILQNKIDLV 184 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc------CCCcEEEEEeccccc
Confidence 023678999999999987777778899999999999975 3333333332 22222 125789999999997
Q ss_pred CC---cccHHHHHHHHHHc--CCCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768 366 DR---QVEINEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 366 ~~---~~~~e~~~~~~~~~--~~~~~~evSAktg~nv~~lf~~i~~~i 408 (452)
+. ....+++.++.... ...+++.+||++|.|+++|++.|...+
T Consensus 185 ~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 185 KEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 51 12233444444332 234589999999999999999888644
No 258
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.28 E-value=3.1e-11 Score=123.34 Aligned_cols=86 Identities=15% Similarity=0.215 Sum_probs=57.4
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEee------e------------cC-CeeEEEEEEecCC
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK------K------------YG-GRPVKLQIWDIAG 301 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~------~------------~~-~~~~~l~l~DtaG 301 (452)
++|+++|.||||||||+|++.+..+.....+.++.+...-...+. . .+ .....+++|||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999866554333433332222111100 0 01 2336789999999
Q ss_pred c----chhhhhhhhh---hcCCCEEEEEEeCC
Q psy14768 302 Q----DRYICMSRVY---YQNSDGCIIMFDLT 326 (452)
Q Consensus 302 ~----e~~~~~~~~~---i~~ad~vIlV~D~t 326 (452)
. .+...+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5 3344444455 89999999999997
No 259
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.27 E-value=3.1e-11 Score=116.37 Aligned_cols=159 Identities=17% Similarity=0.203 Sum_probs=110.3
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh---h----hhhhhh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY---I----CMSRVY 312 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~---~----~~~~~~ 312 (452)
...++++|.|+||||||++++.+-.......+.++.....-.+ ..+..++||+|+||.-.- . ...-..
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l-----~Y~ga~IQild~Pgii~gas~g~grG~~vlsv 137 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGML-----EYKGAQIQLLDLPGIIEGASSGRGRGRQVLSV 137 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceE-----eecCceEEEEcCcccccCcccCCCCcceeeee
Confidence 4789999999999999999999866555554555544444444 346678899999985321 1 122346
Q ss_pred hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhh-----------------------------------------------
Q psy14768 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKC----------------------------------------------- 345 (452)
Q Consensus 313 i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~----------------------------------------------- 345 (452)
+++||.+|+|+|+....+. ++....+++..-
T Consensus 138 ~R~ADlIiiVld~~~~~~~--~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~n 215 (365)
T COG1163 138 ARNADLIIIVLDVFEDPHH--RDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHN 215 (365)
T ss_pred eccCCEEEEEEecCCChhH--HHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCccc
Confidence 8999999999999865431 212222222211
Q ss_pred -----------------hhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768 346 -----------------ILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 346 -----------------~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i 408 (452)
......-+|.++|.||.|+.. .++...+.+.. ..+++||+.+.|++++.+.+.+.+
T Consensus 216 A~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~----~e~~~~l~~~~---~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 216 ADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG----LEELERLARKP---NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred ceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC----HHHHHHHHhcc---ceEEEecccCCCHHHHHHHHHHhh
Confidence 011234689999999999874 55566666665 389999999999999999998877
Q ss_pred HHhh
Q psy14768 409 ICSK 412 (452)
Q Consensus 409 ~~~~ 412 (452)
.-.+
T Consensus 289 ~liR 292 (365)
T COG1163 289 GLIR 292 (365)
T ss_pred CeEE
Confidence 6544
No 260
>KOG1145|consensus
Probab=99.27 E-value=8.3e-11 Score=119.81 Aligned_cols=158 Identities=11% Similarity=0.119 Sum_probs=122.9
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
..+.-|.|+|.-.-|||||+..|-+..+......+++..+....+.++ ++ -.+.|.||||+..|..|+.+-..-+|
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p--~G--~~iTFLDTPGHaAF~aMRaRGA~vtD 226 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP--SG--KSITFLDTPGHAAFSAMRARGANVTD 226 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC--CC--CEEEEecCCcHHHHHHHHhccCcccc
Confidence 345778999999999999999998888888888899998888888874 44 45667799999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHH-------HHcCC-CEEEEe
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVC-------HQYNF-MSWIEV 389 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~-------~~~~~-~~~~ev 389 (452)
+++||+.+.|+.--|.+ +.|... ...+.|+||++||+|..+ ...+.+.+-+ +.+|. .+.+.+
T Consensus 227 IvVLVVAadDGVmpQT~----EaIkhA----k~A~VpiVvAinKiDkp~--a~pekv~~eL~~~gi~~E~~GGdVQvipi 296 (683)
T KOG1145|consen 227 IVVLVVAADDGVMPQTL----EAIKHA----KSANVPIVVAINKIDKPG--ANPEKVKRELLSQGIVVEDLGGDVQVIPI 296 (683)
T ss_pred EEEEEEEccCCccHhHH----HHHHHH----HhcCCCEEEEEeccCCCC--CCHHHHHHHHHHcCccHHHcCCceeEEEe
Confidence 99999999997544443 334444 456799999999999875 2333333322 23332 356999
Q ss_pred cCCCCccHHHHHHHHHHHHH
Q psy14768 390 SSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~~i~ 409 (452)
||++|+|++.|-+.++-...
T Consensus 297 SAl~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 297 SALTGENLDLLEEAILLLAE 316 (683)
T ss_pred ecccCCChHHHHHHHHHHHH
Confidence 99999999999888776554
No 261
>PRK12740 elongation factor G; Reviewed
Probab=99.26 E-value=3e-11 Score=132.33 Aligned_cols=108 Identities=13% Similarity=0.222 Sum_probs=77.9
Q ss_pred eeecccCCcceeeecccccc-cc-----------------ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh
Q psy14768 246 TGDSTVGKTSYVQGFVQNKF-LD-----------------NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC 307 (452)
Q Consensus 246 vG~~nvGKSSLin~l~~~~~-~~-----------------~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~ 307 (452)
+|.+|+|||||+++|+...- +. +...+++.+.....+.+ ..+.+.+|||||+..|..
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-----~~~~i~liDtPG~~~~~~ 75 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-----KGHKINLIDTPGHVDFTG 75 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-----CCEEEEEEECCCcHHHHH
Confidence 68999999999999964211 00 01123333333334333 557899999999998887
Q ss_pred hhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768 308 MSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366 (452)
Q Consensus 308 ~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~ 366 (452)
.+..++..+|++|+|+|+++....+....|..... .++|+++|+||+|+..
T Consensus 76 ~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~--------~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 76 EVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEK--------YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHH--------cCCCEEEEEECCCCCC
Confidence 77888999999999999999887776665544332 2489999999999863
No 262
>PRK00007 elongation factor G; Reviewed
Probab=99.23 E-value=4.6e-11 Score=130.92 Aligned_cols=140 Identities=14% Similarity=0.188 Sum_probs=100.6
Q ss_pred ccEEEeeecccCCcceeeeccc--cc--cc---c-----------ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQ--NK--FL---D-----------NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~--~~--~~---~-----------~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~ 302 (452)
.+|+|+|.+|+|||||+++|+. +. .. . +...+++.+.....+.+ ....+.|+||||+
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-----~~~~~~liDTPG~ 85 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-----KDHRINIIDTPGH 85 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-----CCeEEEEEeCCCc
Confidence 5899999999999999999973 11 10 0 12345555555555555 4567889999999
Q ss_pred chhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcC
Q psy14768 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYN 382 (452)
Q Consensus 303 e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~ 382 (452)
..|.......+..+|++|+|+|+.++...++...|....... +|+|+++||||+.+.. ..+..+++.+.++
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~--------~p~iv~vNK~D~~~~~-~~~~~~~i~~~l~ 156 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYK--------VPRIAFVNKMDRTGAD-FYRVVEQIKDRLG 156 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcC--------CCEEEEEECCCCCCCC-HHHHHHHHHHHhC
Confidence 888766677889999999999999988888877776655544 8999999999997522 3344555666665
Q ss_pred CC---EEEEecCCCC
Q psy14768 383 FM---SWIEVSSKEH 394 (452)
Q Consensus 383 ~~---~~~evSAktg 394 (452)
.. ..+.+||..+
T Consensus 157 ~~~~~~~ipisa~~~ 171 (693)
T PRK00007 157 ANPVPIQLPIGAEDD 171 (693)
T ss_pred CCeeeEEecCccCCc
Confidence 52 2356676665
No 263
>KOG1490|consensus
Probab=99.21 E-value=6.1e-11 Score=119.67 Aligned_cols=178 Identities=13% Similarity=0.117 Sum_probs=124.9
Q ss_pred cccCCCCCCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh----
Q psy14768 230 YCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY---- 305 (452)
Q Consensus 230 ~~~l~~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~---- 305 (452)
...++......-.++++|.||||||||+|.+......+.+.+.++.... +.+++.+-..++++||||.-..
T Consensus 158 l~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~-----vGH~dykYlrwQViDTPGILD~plEd 232 (620)
T KOG1490|consen 158 LSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLL-----VGHLDYKYLRWQVIDTPGILDRPEED 232 (620)
T ss_pred HhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhh-----hhhhhhheeeeeecCCccccCcchhh
Confidence 5666677778889999999999999999999887776666666654333 3333556678889999995321
Q ss_pred hhhh--h--hhhcC-CCEEEEEEeCCCh--hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Ccc---cHHHH
Q psy14768 306 ICMS--R--VYYQN-SDGCIIMFDLTNR--KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQV---EINEI 374 (452)
Q Consensus 306 ~~~~--~--~~i~~-ad~vIlV~D~t~~--~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~---~~e~~ 374 (452)
+... . .++.. --+|+++.|+++. .|..+...+++.|+.. ..++|.|+|+||+|+.. ... ..+.+
T Consensus 233 rN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL-----FaNK~~IlvlNK~D~m~~edL~~~~~~ll 307 (620)
T KOG1490|consen 233 RNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL-----FANKVTILVLNKIDAMRPEDLDQKNQELL 307 (620)
T ss_pred hhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH-----hcCCceEEEeecccccCccccCHHHHHHH
Confidence 1111 1 11211 2467888999864 5667766777778776 47899999999999976 222 22223
Q ss_pred HHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHhhhhhHHH
Q psy14768 375 EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418 (452)
Q Consensus 375 ~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~~~~~~ 418 (452)
..+...-++ +++++|+.+..||..+-..++..++..+....-.
T Consensus 308 ~~~~~~~~v-~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klk 350 (620)
T KOG1490|consen 308 QTIIDDGNV-KVVQTSCVQEEGVMDVRTTACEALLAARVEQKLK 350 (620)
T ss_pred HHHHhccCc-eEEEecccchhceeeHHHHHHHHHHHHHHHHHhh
Confidence 333333334 4999999999999999999999999887755433
No 264
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.21 E-value=1.4e-10 Score=129.81 Aligned_cols=150 Identities=13% Similarity=0.150 Sum_probs=102.9
Q ss_pred cCCcceeeeccccccccccCCcceeeeEEEEEEeeecCC--------ee-----EEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 251 VGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG--------RP-----VKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 251 vGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~--------~~-----~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
++||||+.++.+.........+++.++....+....... .. -.+.||||||++.|..++...+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 469999999998888888888999888877776521000 00 12789999999999988888889999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cccc----------------HHHHH----H
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVE----------------INEIE----A 376 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~----------------~e~~~----~ 376 (452)
++|+|+|++++..-+..+.+ ..+.. .++|+++|+||+|+.. .... .++.. +
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I-~~lk~-------~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAI-NILRQ-------YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECcccCCHhHHHHH-HHHHH-------cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999985333332221 22222 2489999999999964 1100 01110 1
Q ss_pred H---HHHc--------------CCCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768 377 V---CHQY--------------NFMSWIEVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 377 ~---~~~~--------------~~~~~~evSAktg~nv~~lf~~i~~~i 408 (452)
+ +.+. +..+++.|||++|+||++++..+....
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 1 1122 234689999999999999998776543
No 265
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.21 E-value=2.5e-10 Score=105.90 Aligned_cols=161 Identities=7% Similarity=0.085 Sum_probs=100.4
Q ss_pred ccEEEeeecccCCcceeeecccccccccc--CCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh--------hhh-
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNY--KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI--------CMS- 309 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~--~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~--------~~~- 309 (452)
.+|+++|.+|+|||||+|.+++....... .++.+.+.......+ + ...+.++||||..... .+.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~---~--~~~i~viDTPG~~d~~~~~~~~~~~i~~ 75 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW---D--GRRVNVIDTPGLFDTSVSPEQLSKEIVR 75 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE---C--CeEEEEEECcCCCCccCChHHHHHHHHH
Confidence 36899999999999999999986543222 223444443333333 3 3468889999964321 111
Q ss_pred --hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCc-------ccHHHHHHHHHH
Q psy14768 310 --RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQ-------VEINEIEAVCHQ 380 (452)
Q Consensus 310 --~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~-------~~~e~~~~~~~~ 380 (452)
.......|++|+|+|+.+ .+.++. ..+..+...++ ...-.++++|+|++|..... ......+.+.+.
T Consensus 76 ~~~~~~~g~~~illVi~~~~-~t~~d~-~~l~~l~~~fg--~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~ 151 (196)
T cd01852 76 CLSLSAPGPHAFLLVVPLGR-FTEEEE-QAVETLQELFG--EKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEK 151 (196)
T ss_pred HHHhcCCCCEEEEEEEECCC-cCHHHH-HHHHHHHHHhC--hHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHH
Confidence 112467899999999987 444433 23344433321 11225789999999976411 112456667777
Q ss_pred cCCCEEEEec-----CCCCccHHHHHHHHHHHHHHh
Q psy14768 381 YNFMSWIEVS-----SKEHLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 381 ~~~~~~~evS-----Aktg~nv~~lf~~i~~~i~~~ 411 (452)
.+.. |+..+ +..+.++.+|++.+.+.+.+.
T Consensus 152 c~~r-~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 152 CGGR-YVAFNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred hCCe-EEEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 6655 43333 556788999999988887753
No 266
>KOG0084|consensus
Probab=99.18 E-value=2.8e-11 Score=108.82 Aligned_cols=48 Identities=38% Similarity=0.716 Sum_probs=44.1
Q ss_pred CCcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150 (452)
Q Consensus 103 ~~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 150 (452)
...+++|||+||||+|||||||+.||....|...|..|||+||..+.+
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~ 51 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTV 51 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEe
Confidence 456889999999999999999999999999999999999999987664
No 267
>PRK09866 hypothetical protein; Provisional
Probab=99.18 E-value=5.6e-10 Score=117.27 Aligned_cols=111 Identities=18% Similarity=0.221 Sum_probs=77.6
Q ss_pred eEEEEEEecCCcch-----hhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768 291 PVKLQIWDIAGQDR-----YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365 (452)
Q Consensus 291 ~~~l~l~DtaG~e~-----~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~ 365 (452)
..+++|+||||... ....+...+..+|+|++|+|++...+..+.. ....+... ....|+++|+||+|+.
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~Dee-Ilk~Lkk~-----~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEE-VREAILAV-----GQSVPLYVLVNKFDQQ 302 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHH-HHHHHHhc-----CCCCCEEEEEEcccCC
Confidence 35688999999753 2223445799999999999999876666543 33444433 1235999999999986
Q ss_pred C-CcccHHHHHHHHHHc------CCCEEEEecCCCCccHHHHHHHHHHH
Q psy14768 366 D-RQVEINEIEAVCHQY------NFMSWIEVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 366 ~-~~~~~e~~~~~~~~~------~~~~~~evSAktg~nv~~lf~~i~~~ 407 (452)
+ .....+.+..+.... .+..+|.|||++|.|++++++.+...
T Consensus 303 dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 303 DRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred CcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 4 222244555543321 34568999999999999999998873
No 268
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.13 E-value=1.1e-10 Score=110.64 Aligned_cols=165 Identities=18% Similarity=0.254 Sum_probs=110.0
Q ss_pred CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch-------hhhhh
Q psy14768 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR-------YICMS 309 (452)
Q Consensus 237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~-------~~~~~ 309 (452)
...+++|+++|..|+|||||+|+++.....+-..-+.+.+........ +++ -.+.||||+|.+. |+...
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~--~~~--~~l~lwDtPG~gdg~~~D~~~r~~~ 111 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLS--YDG--ENLVLWDTPGLGDGKDKDAEHRQLY 111 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhh--ccc--cceEEecCCCcccchhhhHHHHHHH
Confidence 556789999999999999999999964433222222222232222221 133 4588999999643 56666
Q ss_pred hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC----------------CcccHHH
Q psy14768 310 RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD----------------RQVEINE 373 (452)
Q Consensus 310 ~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~----------------~~~~~e~ 373 (452)
..++.+.|.+++++|+.++.=--+...|.+.+... .+.++++++|..|... ++...+.
T Consensus 112 ~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~------~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k 185 (296)
T COG3596 112 RDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILG------LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEK 185 (296)
T ss_pred HHHhhhccEEEEeccCCCccccCCHHHHHHHHHhc------cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHH
Confidence 77889999999999999875444444555555544 3489999999999743 1112222
Q ss_pred HHHHHHHc-CCCEEEEecCCCCccHHHHHHHHHHHHHHh
Q psy14768 374 IEAVCHQY-NFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 374 ~~~~~~~~-~~~~~~evSAktg~nv~~lf~~i~~~i~~~ 411 (452)
++.+.+.+ ...+.+++++..+.|++++...++..+-..
T Consensus 186 ~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 186 AEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 22222222 244679999999999999999998887644
No 269
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.5e-10 Score=115.14 Aligned_cols=182 Identities=13% Similarity=0.187 Sum_probs=122.7
Q ss_pred CCceeEEEEcCCCCCchhhhhhhcc--cccccccCCCccccceeeeecccccCCccceeeeeeccccCCCCCCCcccEEE
Q psy14768 168 TPSYLILITGDSTVGKTSYVQGFVQ--NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCTLSPIQIPTYPILI 245 (452)
Q Consensus 168 ~~~~~Il~vgD~~vGkTsl~~r~~~--~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~~~~l~~~~~~~~kI~i 245 (452)
.+.+.++|+|....||++|+-|+.. +.++.....-+..
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~---------------------------------------- 44 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEK---------------------------------------- 44 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHH----------------------------------------
Confidence 3457899999999999999887652 2233211000000
Q ss_pred eeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeC
Q psy14768 246 TGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDL 325 (452)
Q Consensus 246 vG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~ 325 (452)
-..+.||+|+--+++-++.-.+...+.+.+.....+.. ..+.|.|+|++|++.|-..+...+.+||++|||+|+
T Consensus 45 -ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-----~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a 118 (428)
T COG5256 45 -EAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-----DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDA 118 (428)
T ss_pred -HHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-----CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEEC
Confidence 01246898887777777777777788888777777655 566889999999999988888888999999999999
Q ss_pred CChhhHHH-----HHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHH----HHHHHHHcCCC----EEEEecC
Q psy14768 326 TNRKSFES-----VVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINE----IEAVCHQYNFM----SWIEVSS 391 (452)
Q Consensus 326 t~~~S~~~-----~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~----~~~~~~~~~~~----~~~evSA 391 (452)
.+.+...- +..-...+.+. ..-.-+|+++||.|+.+ ++..+++ +..+.+..|+. +|+.+||
T Consensus 119 ~~~efE~g~~~~gQtrEH~~La~t-----lGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg 193 (428)
T COG5256 119 RDGEFEAGFGVGGQTREHAFLART-----LGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISG 193 (428)
T ss_pred CCCccccccccCCchhHHHHHHHh-----cCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEeccc
Confidence 98731111 11111111111 12356899999999987 3333333 33455666653 4899999
Q ss_pred CCCccHHHH
Q psy14768 392 KEHLMIEDS 400 (452)
Q Consensus 392 ktg~nv~~l 400 (452)
.+|+|+.+.
T Consensus 194 ~~G~Nl~~~ 202 (428)
T COG5256 194 FKGDNLTKK 202 (428)
T ss_pred ccCCccccc
Confidence 999998753
No 270
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.11 E-value=2.7e-10 Score=109.43 Aligned_cols=95 Identities=16% Similarity=0.213 Sum_probs=77.1
Q ss_pred chhhhhhhhhhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHH
Q psy14768 303 DRYICMSRVYYQNSDGCIIMFDLTNRK-SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQ 380 (452)
Q Consensus 303 e~~~~~~~~~i~~ad~vIlV~D~t~~~-S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~ 380 (452)
++|..+.+.+++++|++++|||++++. +|+.+..|+..+.. .++|++||+||+||.+ .++..+..+.+ ..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-------~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~ 95 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-------QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RN 95 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEECcccCCCHHHHHHHHHHH-HH
Confidence 677888888999999999999999877 89999999876653 3599999999999975 33333444444 35
Q ss_pred cCCCEEEEecCCCCccHHHHHHHHHH
Q psy14768 381 YNFMSWIEVSSKEHLMIEDSMNFLVD 406 (452)
Q Consensus 381 ~~~~~~~evSAktg~nv~~lf~~i~~ 406 (452)
.+.. ++++||++|.|++++|+.+..
T Consensus 96 ~g~~-v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 96 IGYQ-VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred CCCe-EEEEecCCchhHHHHHhhhcC
Confidence 6765 999999999999999998764
No 271
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.10 E-value=8.5e-11 Score=106.77 Aligned_cols=118 Identities=24% Similarity=0.313 Sum_probs=71.7
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhh-hh--hhcCCC
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMS-RV--YYQNSD 317 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~-~~--~i~~ad 317 (452)
-.|+++|++|+|||+|..+|..+....+..+. .... ...+ -......+.++|+||+.+.+... .. +..++.
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~--~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k 77 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNV--NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAK 77 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCG--SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEe--ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCC
Confidence 45889999999999999999987555443222 1111 1101 02344567888999999877533 33 588999
Q ss_pred EEEEEEeCCC-hhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768 318 GCIIMFDLTN-RKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365 (452)
Q Consensus 318 ~vIlV~D~t~-~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~ 365 (452)
+||+|+|++. .....++..+++.+..... .....+|++|++||.|+.
T Consensus 78 ~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~-~~~~~~piLIacNK~Dl~ 125 (181)
T PF09439_consen 78 GIIFVVDSSTDQKELRDVAEYLYDILSDTE-VQKNKPPILIACNKQDLF 125 (181)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHH-CCTT--EEEEEEE-TTST
T ss_pred EEEEEEeCccchhhHHHHHHHHHHHHHhhh-hccCCCCEEEEEeCcccc
Confidence 9999999974 4455566554444433321 124679999999999985
No 272
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.10 E-value=1.5e-10 Score=127.47 Aligned_cols=116 Identities=14% Similarity=0.137 Sum_probs=82.7
Q ss_pred CcccEEEeeecccCCcceeeeccccc-----------cccccC-----C--cceeeeEEEEEEeeecCCeeEEEEEEecC
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNK-----------FLDNYK-----N--TVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~-----------~~~~~~-----~--t~~~d~~~~~i~~~~~~~~~~~l~l~Dta 300 (452)
...+|+++|..++|||||+++|+... ...++. . |+........+.. ++..+.+.|||||
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~---~~~~~~i~liDTP 94 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEY---EGNEYLINLIDTP 94 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEee---cCCceEEEEEeCC
Confidence 34699999999999999999997421 000111 1 2222222222223 6678899999999
Q ss_pred CcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365 (452)
Q Consensus 301 G~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~ 365 (452)
|+..|......+++.+|++|+|+|+.++...+....|...... ++|+++|+||+|..
T Consensus 95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~--------~~p~ivviNKiD~~ 151 (720)
T TIGR00490 95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE--------NVKPVLFINKVDRL 151 (720)
T ss_pred CccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc--------CCCEEEEEEChhcc
Confidence 9999887778899999999999999987665655555443333 37889999999985
No 273
>KOG0082|consensus
Probab=99.02 E-value=1.4e-09 Score=107.80 Aligned_cols=144 Identities=14% Similarity=0.101 Sum_probs=106.3
Q ss_pred ccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh-------hHHHHHH
Q psy14768 264 KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK-------SFESVVQ 336 (452)
Q Consensus 264 ~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~-------S~~~~~~ 336 (452)
.+.....+|+|..- ..+.+ +...+.++|++||+.-+.-|.+++++++++|||+++++.. .-..+..
T Consensus 174 DIL~~R~~T~GI~e--~~F~~-----k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~e 246 (354)
T KOG0082|consen 174 DILRSRVPTTGIVE--VEFTI-----KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHE 246 (354)
T ss_pred HHHhhccCcCCeeE--EEEEe-----CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHH
Confidence 34445567777433 33433 4467889999999998999999999999999999998762 3455667
Q ss_pred HHHHHHhhhhhcCCCCCcEEEEEECCCCCC----------------CcccHHHHHHHHHHc---------CCCEEEEecC
Q psy14768 337 WKHDLDSKCILDNGAMLPCLLLASKCDLPD----------------RQVEINEIEAVCHQY---------NFMSWIEVSS 391 (452)
Q Consensus 337 ~~~~i~~~~~~~~~~~~piilV~NK~Dl~~----------------~~~~~e~~~~~~~~~---------~~~~~~evSA 391 (452)
-+..++..++.+...+.++||++||.||.+ .....+++..+.... .-...+++.|
T Consensus 247 S~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~A 326 (354)
T KOG0082|consen 247 SLKLFESICNNKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCA 326 (354)
T ss_pred HHHHHHHHhcCcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEee
Confidence 778888888888999999999999999842 112334444333221 1232478899
Q ss_pred CCCccHHHHHHHHHHHHHHhhhh
Q psy14768 392 KEHLMIEDSMNFLVDRIICSKRM 414 (452)
Q Consensus 392 ktg~nv~~lf~~i~~~i~~~~~~ 414 (452)
.+-.+|+.+|..+...++..+-.
T Consensus 327 tDT~nv~~vf~av~d~Ii~~nlk 349 (354)
T KOG0082|consen 327 TDTQNVQFVFDAVTDTIIQNNLK 349 (354)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877653
No 274
>KOG0077|consensus
Probab=99.02 E-value=5.1e-10 Score=97.80 Aligned_cols=158 Identities=16% Similarity=0.203 Sum_probs=110.6
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
.+.-|++++|-.|+|||||++.+-.++. .++.||.-... ..+.+ .+++++.+|.+|+..-+..|..|+..+|
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPTS--E~l~I-----g~m~ftt~DLGGH~qArr~wkdyf~~v~ 89 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTS--EELSI-----GGMTFTTFDLGGHLQARRVWKDYFPQVD 89 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCCh--HHhee-----cCceEEEEccccHHHHHHHHHHHHhhhc
Confidence 4567999999999999999998776554 34445443222 23333 4567888999999888889999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHH---HHHHcC-----------C
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEA---VCHQYN-----------F 383 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~---~~~~~~-----------~ 383 (452)
++++.+|+-+.+-|+..+.-++.+.... .-...|++|.+||+|... ..++++.+. +.+..+ .
T Consensus 90 ~iv~lvda~d~er~~es~~eld~ll~~e---~la~vp~lilgnKId~p~-a~se~~l~~~l~l~~~t~~~~~v~~~~~~~ 165 (193)
T KOG0077|consen 90 AIVYLVDAYDQERFAESKKELDALLSDE---SLATVPFLILGNKIDIPY-AASEDELRFHLGLSNFTTGKGKVNLTDSNV 165 (193)
T ss_pred eeEeeeehhhHHHhHHHHHHHHHHHhHH---HHhcCcceeecccccCCC-cccHHHHHHHHHHHHHhcccccccccCCCC
Confidence 9999999999999988876555543331 236799999999999875 223333222 222211 1
Q ss_pred C--EEEEecCCCCccHHHHHHHHHHH
Q psy14768 384 M--SWIEVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 384 ~--~~~evSAktg~nv~~lf~~i~~~ 407 (452)
. ..+.||...+.+.-+.|.|+.+.
T Consensus 166 rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 166 RPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred CeEEEEEEEEEccCccceeeeehhhh
Confidence 1 13777877777777777776553
No 275
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.02 E-value=1.9e-09 Score=102.34 Aligned_cols=140 Identities=16% Similarity=0.169 Sum_probs=84.4
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
.....|+++|.+|+|||+|++.+++..-........|. ..+. ......+.++||+|.- ..+ ...++.+|
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i~----~~~~~~i~~vDtPg~~--~~~-l~~ak~aD 105 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITVV----TGKKRRLTFIECPNDI--NAM-IDIAKVAD 105 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEEE----ecCCceEEEEeCCchH--HHH-HHHHHhcC
Confidence 44577999999999999999988863111111111110 1111 1245567889999853 222 33468899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcE-EEEEECCCCCC-Cc---ccHHHHHH-HHH-HcCCCEEEEec
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC-LLLASKCDLPD-RQ---VEINEIEA-VCH-QYNFMSWIEVS 390 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~pi-ilV~NK~Dl~~-~~---~~~e~~~~-~~~-~~~~~~~~evS 390 (452)
++++|+|++.+...++... +..+... ++|. ++|+||+|+.+ .. ...+.++. +.. .+.+.+++++|
T Consensus 106 vVllviDa~~~~~~~~~~i-~~~l~~~-------g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iS 177 (225)
T cd01882 106 LVLLLIDASFGFEMETFEF-LNILQVH-------GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLS 177 (225)
T ss_pred EEEEEEecCcCCCHHHHHH-HHHHHHc-------CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEe
Confidence 9999999987766555433 2333222 3674 55999999974 11 11122222 222 33556789999
Q ss_pred CCCCcc
Q psy14768 391 SKEHLM 396 (452)
Q Consensus 391 Aktg~n 396 (452)
|+++..
T Consensus 178 a~~~~~ 183 (225)
T cd01882 178 GIVHGR 183 (225)
T ss_pred eccCCC
Confidence 998744
No 276
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.00 E-value=1.8e-09 Score=105.20 Aligned_cols=147 Identities=14% Similarity=0.179 Sum_probs=103.7
Q ss_pred CcccEEEeeecccCCcceeeeccccc-cc-c-------------------------------ccCCcceeeeEEEEEEee
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNK-FL-D-------------------------------NYKNTVGVDFSTKLLSHK 285 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~-~~-~-------------------------------~~~~t~~~d~~~~~i~~~ 285 (452)
..++++-+|+-.-|||||+-||+.+. .+ . +..-++++|.....+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF--- 81 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF--- 81 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec---
Confidence 34678899999999999999998421 11 0 111234555544444
Q ss_pred ecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHH-HHHHHHhhhhhcCCCCCcEEEEEECCCC
Q psy14768 286 KYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKCDL 364 (452)
Q Consensus 286 ~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~-~~~~i~~~~~~~~~~~~piilV~NK~Dl 364 (452)
.-.+-+|++-||||++.|...+..-..-||++|+++|+-.+.-.|.-+. ++..+.-. +-++|++||.||
T Consensus 82 --sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGI--------rhvvvAVNKmDL 151 (431)
T COG2895 82 --STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGI--------RHVVVAVNKMDL 151 (431)
T ss_pred --ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCC--------cEEEEEEeeecc
Confidence 3456678899999999999888888889999999999976654444332 33333333 568999999999
Q ss_pred CC-CcccH----HHHHHHHHHcCCC--EEEEecCCCCccHH
Q psy14768 365 PD-RQVEI----NEIEAVCHQYNFM--SWIEVSSKEHLMIE 398 (452)
Q Consensus 365 ~~-~~~~~----e~~~~~~~~~~~~--~~~evSAktg~nv~ 398 (452)
.+ .+... ++...|+.++++. .|+.+||+.|+||-
T Consensus 152 vdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 152 VDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred cccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 98 33223 3445577777763 47999999999984
No 277
>PTZ00258 GTP-binding protein; Provisional
Probab=98.98 E-value=3.5e-09 Score=107.36 Aligned_cols=86 Identities=20% Similarity=0.198 Sum_probs=61.4
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCe--------------eEEEEEEecCCcch
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR--------------PVKLQIWDIAGQDR 304 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~--------------~~~l~l~DtaG~e~ 304 (452)
..++|+|+|.||||||||+|++.+........|.++.+...-.+.++ +.. ..++.++||||...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~--d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVP--DERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecc--cchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 35799999999999999999998877666666777766655555441 111 23588999999542
Q ss_pred hh----hhh---hhhhcCCCEEEEEEeCC
Q psy14768 305 YI----CMS---RVYYQNSDGCIIMFDLT 326 (452)
Q Consensus 305 ~~----~~~---~~~i~~ad~vIlV~D~t 326 (452)
-. .+. ...++++|++|+|+|+.
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 11 122 23478899999999984
No 278
>KOG0090|consensus
Probab=98.97 E-value=1.2e-08 Score=93.19 Aligned_cols=157 Identities=18% Similarity=0.257 Sum_probs=97.4
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhc---CCC
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQ---NSD 317 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~---~ad 317 (452)
-.|+++|..++|||+|.-+|..+.......+ .......+. +... .+.++|.||+.+.+.-...++. ++-
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS-----iepn~a~~r-~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~ak 110 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTS-----IEPNEATYR-LGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAK 110 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeee-----eccceeeEe-ecCc--ceEEEeCCCcHHHHHHHHHHccccccce
Confidence 5789999999999999999987633322211 111111110 0222 2678899999887765555555 799
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------CcccHHHHHHHHHHcC-------
Q psy14768 318 GCIIMFDLTNR-KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------RQVEINEIEAVCHQYN------- 382 (452)
Q Consensus 318 ~vIlV~D~t~~-~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------~~~~~e~~~~~~~~~~------- 382 (452)
+++||+|...- ....++..++..+...... ....+|++|++||.|+.- ++..+.++..+.....
T Consensus 111 aiVFVVDSa~f~k~vrdvaefLydil~~~~~-~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ 189 (238)
T KOG0090|consen 111 AIVFVVDSATFLKNVRDVAEFLYDILLDSRV-KKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISD 189 (238)
T ss_pred eEEEEEeccccchhhHHHHHHHHHHHHhhcc-ccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 99999998643 3445555544444333110 246788999999999853 2222222222222111
Q ss_pred ------------------------CCEEEEecCCCCccHHHHHHHHHHH
Q psy14768 383 ------------------------FMSWIEVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 383 ------------------------~~~~~evSAktg~nv~~lf~~i~~~ 407 (452)
-..|.+.|++++ +++++-+|+.+.
T Consensus 190 ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 190 EDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 123789999988 899999998764
No 279
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.96 E-value=2.2e-09 Score=106.90 Aligned_cols=109 Identities=10% Similarity=0.063 Sum_probs=69.5
Q ss_pred eeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCc-
Q psy14768 290 RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQ- 368 (452)
Q Consensus 290 ~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~- 368 (452)
..+.+.|+||+|...-. ......||.+++|.+...+...+.+.. ..++ ..-++|+||||+....
T Consensus 147 ~g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k~--gi~E----------~aDIiVVNKaDl~~~~~ 211 (332)
T PRK09435 147 AGYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIKK--GIME----------LADLIVINKADGDNKTA 211 (332)
T ss_pred cCCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHHh--hhhh----------hhheEEeehhcccchhH
Confidence 45788999999976221 224678999999977444444443321 1222 2248999999987522
Q ss_pred --ccHHHHHHHHHHcC-----C-CEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 369 --VEINEIEAVCHQYN-----F-MSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 369 --~~~e~~~~~~~~~~-----~-~~~~evSAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
....++........ + .+++.+||+++.||+++++.+.+.+.....
T Consensus 212 a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~ 264 (332)
T PRK09435 212 ARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTA 264 (332)
T ss_pred HHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 11222333322211 2 458999999999999999999987664433
No 280
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.92 E-value=6.1e-09 Score=102.00 Aligned_cols=131 Identities=14% Similarity=0.102 Sum_probs=77.3
Q ss_pred eccccCCCCCCCcccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh
Q psy14768 228 DIYCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI 306 (452)
Q Consensus 228 d~~~~l~~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~ 306 (452)
+....++......++|+++|.+|+||||++|++++++.. .+...+.+.......... ....+.+|||||.....
T Consensus 26 ~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~-----~G~~l~VIDTPGL~d~~ 100 (313)
T TIGR00991 26 ELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR-----AGFTLNIIDTPGLIEGG 100 (313)
T ss_pred HHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE-----CCeEEEEEECCCCCchH
Confidence 334556666777899999999999999999999986532 222222222222222222 34678999999976542
Q ss_pred hhhh---hhhc------CCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768 307 CMSR---VYYQ------NSDGCIIMFDLTNR-KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366 (452)
Q Consensus 307 ~~~~---~~i~------~ad~vIlV~D~t~~-~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~ 366 (452)
.+.. ..++ ..|++|+|..++.. .+..+ ...+..+...++. .--..+|||+|++|...
T Consensus 101 ~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~D-kqlLk~Iqe~FG~--~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 101 YINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLD-GQVIRAITDSFGK--DIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHH-HHHHHHHHHHhhh--hhhccEEEEEECCccCC
Confidence 2211 1122 58999999665432 22111 2233334333221 12246899999999763
No 281
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.92 E-value=4.2e-09 Score=88.00 Aligned_cols=137 Identities=18% Similarity=0.203 Sum_probs=97.1
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc----chhhhhhhhhhcCCC
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ----DRYICMSRVYYQNSD 317 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~----e~~~~~~~~~i~~ad 317 (452)
+++++|..++||++|.+++.++..... .|.. +++ +.+. .+||+|. ..++.-......++|
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk--KTQA-------ve~---~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dad 66 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK--KTQA-------VEF---NDKG----DIDTPGEYFEHPRWYHALITTLQDAD 66 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc--ccce-------eec---cCcc----ccCCchhhhhhhHHHHHHHHHhhccc
Confidence 689999999999999999987654321 2222 112 2221 4699993 222222234467899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
++++|-.++++.|.-.-. +. .-..+|+|=|++|.||.+ ....+..+.|..+.|..++|++|+.++.+|
T Consensus 67 vi~~v~~and~~s~f~p~-----f~------~~~~k~vIgvVTK~DLae-d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv 134 (148)
T COG4917 67 VIIYVHAANDPESRFPPG-----FL------DIGVKKVIGVVTKADLAE-DADISLVKRWLREAGAEPIFETSAVDNQGV 134 (148)
T ss_pred eeeeeecccCccccCCcc-----cc------cccccceEEEEecccccc-hHhHHHHHHHHHHcCCcceEEEeccCcccH
Confidence 999999999885422110 01 112366999999999985 456778899999999998999999999999
Q ss_pred HHHHHHHHH
Q psy14768 398 EDSMNFLVD 406 (452)
Q Consensus 398 ~~lf~~i~~ 406 (452)
+++++.+..
T Consensus 135 ~~l~~~L~~ 143 (148)
T COG4917 135 EELVDYLAS 143 (148)
T ss_pred HHHHHHHHh
Confidence 999988754
No 282
>KOG0098|consensus
Probab=98.91 E-value=1.7e-09 Score=96.41 Aligned_cols=47 Identities=28% Similarity=0.583 Sum_probs=42.0
Q ss_pred cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
+.+.+|++|+||.|||||||+.||+.++|...+..|+|++|..+.+.
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~ 49 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVT 49 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEE
Confidence 35679999999999999999999999999988889999999876644
No 283
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.91 E-value=7e-09 Score=114.54 Aligned_cols=116 Identities=16% Similarity=0.223 Sum_probs=81.1
Q ss_pred ccEEEeeecccCCcceeeeccccc-cccccCC---------------cceeeeEEEEEEeeecCCeeEEEEEEecCCcch
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNK-FLDNYKN---------------TVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR 304 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~---------------t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~ 304 (452)
-+|+++|..++|||||+.+++... .+..... +++.+.....+.+ .+++..+.+.|+||||+..
T Consensus 21 Rni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~i~liDtPG~~d 99 (731)
T PRK07560 21 RNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVH-EYEGKEYLINLIDTPGHVD 99 (731)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEE-EecCCcEEEEEEcCCCccC
Confidence 469999999999999999997521 1111100 1222221111211 1144577899999999999
Q ss_pred hhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768 305 YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365 (452)
Q Consensus 305 ~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~ 365 (452)
|.......++.+|++|+|+|+.++...+....|....... .|+|+++||+|+.
T Consensus 100 f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~--------~~~iv~iNK~D~~ 152 (731)
T PRK07560 100 FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRER--------VKPVLFINKVDRL 152 (731)
T ss_pred hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcC--------CCeEEEEECchhh
Confidence 8877788899999999999999887666666665544433 6889999999975
No 284
>KOG0394|consensus
Probab=98.90 E-value=1.9e-09 Score=95.94 Aligned_cols=47 Identities=47% Similarity=0.791 Sum_probs=42.0
Q ss_pred CcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150 (452)
Q Consensus 104 ~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 150 (452)
.+..++||+|+||+|||||||.|||+.++|...|..|||.||..+++
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev 51 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEV 51 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEE
Confidence 34567999999999999999999999999999999999999987664
No 285
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.90 E-value=4.3e-09 Score=89.19 Aligned_cols=113 Identities=25% Similarity=0.236 Sum_probs=80.1
Q ss_pred ccEEEeeecccCCcceeeeccccccccccC-CcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYK-NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~-~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
+|++++|..++|||+|+.++....+...+. ++.+ +......+++.++.+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~------------------------------~~~~~~~~~~s~~~~ 50 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG------------------------------IDVYDPTSYESFDVV 50 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh------------------------------hhhccccccCCCCEE
Confidence 489999999999999999997665543322 2221 233335567889999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
++|||.++..+++.+ |...+... ...+.|+++++||.|+.+ .+...+ .... |+++||+++.|+.
T Consensus 51 ~~v~~~~~~~s~~~~--~~~~i~~~----~k~dl~~~~~~nk~dl~~~~~~~~~--------~~~~-~~~~s~~~~~~~~ 115 (124)
T smart00010 51 LQCWRVDDRDSADNK--NVPEVLVG----NKSDLPILVGGNRDVLEEERQVATE--------EGLE-FAETSAKTPEEGE 115 (124)
T ss_pred EEEEEccCHHHHHHH--hHHHHHhc----CCCCCcEEEEeechhhHhhCcCCHH--------HHHH-HHHHhCCCcchhh
Confidence 999999999998776 77666554 345688999999999853 222222 2222 6778999999885
No 286
>KOG0080|consensus
Probab=98.90 E-value=3.6e-09 Score=91.99 Aligned_cols=47 Identities=49% Similarity=0.710 Sum_probs=34.4
Q ss_pred CCcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeee
Q psy14768 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149 (452)
Q Consensus 103 ~~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~ 149 (452)
..+++.+||+|||++|||||+|+.||+.+.|......|||+||..+.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~ 52 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKV 52 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEE
Confidence 34567788888888888888888888888876555555666665433
No 287
>KOG1532|consensus
Probab=98.89 E-value=1.7e-09 Score=101.94 Aligned_cols=215 Identities=14% Similarity=0.207 Sum_probs=116.9
Q ss_pred CCCceeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeeccccCCCCCCCcccEEEe
Q psy14768 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCTLSPIQIPTYPILIT 246 (452)
Q Consensus 167 ~~~~~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~~~~l~~~~~~~~kI~iv 246 (452)
......|++||.+|.|||+++.|+....+.....+.+ +++-..+..+ .-..+++|.|+.. +...+|-.-+
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYv-iNLDPAv~~v----py~aniDIRDtVk-----YkEvMkqY~L 85 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYV-INLDPAVRNV----PYPANIDIRDTVK-----YKEVMKQYQL 85 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeE-EeCCHHHhcC----CCccCCchhhhhh-----HHHHHHHhCC
Confidence 3344679999999999999999987655554433322 2222212111 1233344444421 1122444556
Q ss_pred eecccCCcceeeecccc--ccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch-hh-----hhhhhhhcC--C
Q psy14768 247 GDSTVGKTSYVQGFVQN--KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR-YI-----CMSRVYYQN--S 316 (452)
Q Consensus 247 G~~nvGKSSLin~l~~~--~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~-~~-----~~~~~~i~~--a 316 (452)
|+.| |-.|-+|-|+.+ .++ .. +.. ....+.+.++|||||-+ |. .+....+.. -
T Consensus 86 GPNG-gI~TsLNLF~tk~dqv~-~~------------iek---~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~p 148 (366)
T KOG1532|consen 86 GPNG-GIVTSLNLFATKFDQVI-EL------------IEK---RAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFP 148 (366)
T ss_pred CCCc-chhhhHHHHHHHHHHHH-HH------------HHH---hhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCC
Confidence 7654 555555655531 111 10 000 22335678899999743 32 222233333 3
Q ss_pred CEEEEEEeCCC---hhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCC------cccHHHHHHHHH--------
Q psy14768 317 DGCIIMFDLTN---RKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDR------QVEINEIEAVCH-------- 379 (452)
Q Consensus 317 d~vIlV~D~t~---~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~------~~~~e~~~~~~~-------- 379 (452)
-++++|+|... +.+|=. .+...|.+......|+|+|.||.|+.+. -.+.+..++-.+
T Consensus 149 tvv~YvvDt~rs~~p~tFMS------NMlYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s 222 (366)
T KOG1532|consen 149 TVVVYVVDTPRSTSPTTFMS------NMLYACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMS 222 (366)
T ss_pred eEEEEEecCCcCCCchhHHH------HHHHHHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhH
Confidence 46666777532 333321 1111222234467999999999999761 112222222111
Q ss_pred ------------HcCCCEEEEecCCCCccHHHHHHHHHHHHHHhhhh
Q psy14768 380 ------------QYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414 (452)
Q Consensus 380 ------------~~~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~~ 414 (452)
.+.....+-|||.+|.|.+++|..+.+.+.++...
T Consensus 223 ~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~ 269 (366)
T KOG1532|consen 223 NLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEE 269 (366)
T ss_pred HhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHH
Confidence 11223368899999999999999999988887554
No 288
>KOG0705|consensus
Probab=98.89 E-value=1.3e-08 Score=103.78 Aligned_cols=177 Identities=21% Similarity=0.340 Sum_probs=135.7
Q ss_pred CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS 316 (452)
Q Consensus 237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a 316 (452)
...++|+.|+|...+|||+|+.+++...+..+..+.-+ .| .+++.+ ++....+.+.|.+|.. ...|-..+
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~-~~-kkE~vv---~gqs~lLlirdeg~~~-----~aQft~wv 96 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG-RF-KKEVVV---DGQSHLLLIRDEGGHP-----DAQFCQWV 96 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCcCc-cc-eeeEEe---eccceEeeeecccCCc-----hhhhhhhc
Confidence 45679999999999999999999999888877655444 33 344444 7788888888988832 24566789
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHHHcCCCEEEEecCCC
Q psy14768 317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCHQYNFMSWIEVSSKE 393 (452)
Q Consensus 317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~~~~~~~~~evSAkt 393 (452)
|++||||.+.+..+|+.+..+...+..+. ....+|+++|+++.-... +.+......+++.++.-..||+++|.+
T Consensus 97 davIfvf~~~d~~s~q~v~~l~~~l~~~r---~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~aty 173 (749)
T KOG0705|consen 97 DAVVFVFSVEDEQSFQAVQALAHEMSSYR---NISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATY 173 (749)
T ss_pred cceEEEEEeccccCHHHHHHHHhhccccc---ccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhh
Confidence 99999999999999999988877776554 356789999998743222 556666777777777766699999999
Q ss_pred CccHHHHHHHHHHHHHHhhhhhHHHHhhccccc
Q psy14768 394 HLMIEDSMNFLVDRIICSKRMEEEAVERKSSIR 426 (452)
Q Consensus 394 g~nv~~lf~~i~~~i~~~~~~~~~~~~~~~s~~ 426 (452)
|.++...|+.++..++..++..+....+..++.
T Consensus 174 Glnv~rvf~~~~~k~i~~~~~qq~~~~~~~s~~ 206 (749)
T KOG0705|consen 174 GLNVERVFQEVAQKIVQLRKYQQLPASSSKSLP 206 (749)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 999999999999999988665554444333333
No 289
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.88 E-value=1.4e-08 Score=101.85 Aligned_cols=86 Identities=13% Similarity=0.115 Sum_probs=58.6
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeee---------cCC---eeEEEEEEecCCcchh---
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------YGG---RPVKLQIWDIAGQDRY--- 305 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~---------~~~---~~~~l~l~DtaG~e~~--- 305 (452)
++|+++|.||||||||+|++.+........|.++.+...-.+.+.. ++. ....+.++|+||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 6899999999999999999998765555556666655544444311 000 0135889999995421
Q ss_pred -hhhhh---hhhcCCCEEEEEEeCC
Q psy14768 306 -ICMSR---VYYQNSDGCIIMFDLT 326 (452)
Q Consensus 306 -~~~~~---~~i~~ad~vIlV~D~t 326 (452)
..+.. ..++++|++|+|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11222 2478999999999984
No 290
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.87 E-value=3.4e-09 Score=118.45 Aligned_cols=118 Identities=12% Similarity=0.177 Sum_probs=84.2
Q ss_pred cccEEEeeecccCCcceeeeccccc-cccccC---------------CcceeeeEEEEEEeee-----------cCCeeE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNK-FLDNYK---------------NTVGVDFSTKLLSHKK-----------YGGRPV 292 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~---------------~t~~~d~~~~~i~~~~-----------~~~~~~ 292 (452)
--+|+|+|..++|||||+++++... .+.... .+++.+.....+.+.. .....+
T Consensus 19 Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
T PLN00116 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEY 98 (843)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCce
Confidence 4589999999999999999998522 111111 1122221112222210 022367
Q ss_pred EEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365 (452)
Q Consensus 293 ~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~ 365 (452)
.+.|+||||+..|.......++.+|++|+|+|+.++...+....|...+... +|+||++||+|+.
T Consensus 99 ~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~--------~p~i~~iNK~D~~ 163 (843)
T PLN00116 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER--------IRPVLTVNKMDRC 163 (843)
T ss_pred EEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCC--------CCEEEEEECCccc
Confidence 7889999999999888888899999999999999998777766676655554 8999999999987
No 291
>KOG1144|consensus
Probab=98.86 E-value=9.4e-09 Score=107.89 Aligned_cols=167 Identities=13% Similarity=0.089 Sum_probs=115.1
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeee----------cC---CeeEEEEEEecCCcchhh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK----------YG---GRPVKLQIWDIAGQDRYI 306 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~----------~~---~~~~~l~l~DtaG~e~~~ 306 (452)
..-+||+|.-.+|||-|+..+-+..+......+++.-+....+.... +. .+.--+.++||+|++.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 46689999999999999999888777777777777666555554310 00 111236688999999999
Q ss_pred hhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C-------------cccHH
Q psy14768 307 CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R-------------QVEIN 372 (452)
Q Consensus 307 ~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~-------------~~~~e 372 (452)
.++.+.-.-||.+|||+|+..+..-+.++.+ +.++ ..+.|+||++||+|... . +....
T Consensus 555 nlRsrgsslC~~aIlvvdImhGlepqtiESi-~lLR-------~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~ 626 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHGLEPQTIESI-NLLR-------MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD 626 (1064)
T ss_pred hhhhccccccceEEEEeehhccCCcchhHHH-HHHH-------hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence 9999999999999999999987544444332 2222 24599999999999642 0 00011
Q ss_pred HHH-----------HHHHH-c------------CCCEEEEecCCCCccHHHHHHHHHHHHHHhhhh
Q psy14768 373 EIE-----------AVCHQ-Y------------NFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414 (452)
Q Consensus 373 ~~~-----------~~~~~-~------------~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~~ 414 (452)
... +|.++ + .+..++.+||.+|+||-+|+.+|++........
T Consensus 627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~ 692 (1064)
T KOG1144|consen 627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVE 692 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHH
Confidence 111 11111 0 112248899999999999999999887766553
No 292
>PTZ00416 elongation factor 2; Provisional
Probab=98.86 E-value=3.6e-09 Score=118.06 Aligned_cols=117 Identities=12% Similarity=0.221 Sum_probs=81.6
Q ss_pred ccEEEeeecccCCcceeeecccc-ccccccCC---------------cceeeeEEEEEEeeec-----CCeeEEEEEEec
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQN-KFLDNYKN---------------TVGVDFSTKLLSHKKY-----GGRPVKLQIWDI 299 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~-~~~~~~~~---------------t~~~d~~~~~i~~~~~-----~~~~~~l~l~Dt 299 (452)
-+|+++|..++|||||+++|+.. ..+..... +++.+.....+.+... +++.+.+.|+||
T Consensus 20 rni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDt 99 (836)
T PTZ00416 20 RNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDS 99 (836)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcC
Confidence 48999999999999999999852 11111111 1222211122222000 123567899999
Q ss_pred CCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365 (452)
Q Consensus 300 aG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~ 365 (452)
||+..|.......++.+|++|+|+|+.++...+....|....... +|+|+|+||+|+.
T Consensus 100 PG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~--------~p~iv~iNK~D~~ 157 (836)
T PTZ00416 100 PGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQER--------IRPVLFINKVDRA 157 (836)
T ss_pred CCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcC--------CCEEEEEEChhhh
Confidence 999988877788899999999999999987777666665444433 8999999999986
No 293
>KOG0095|consensus
Probab=98.85 E-value=2.6e-09 Score=91.56 Aligned_cols=49 Identities=37% Similarity=0.571 Sum_probs=43.3
Q ss_pred CCCcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150 (452)
Q Consensus 102 ~~~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 150 (452)
+++++.+|||++||..|||||||++||.+.-|+.-...|||+||-.+.+
T Consensus 1 medykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktv 49 (213)
T KOG0095|consen 1 MEDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTV 49 (213)
T ss_pred CcccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEE
Confidence 3567889999999999999999999999999998888899888876553
No 294
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.84 E-value=2.2e-08 Score=100.72 Aligned_cols=157 Identities=17% Similarity=0.240 Sum_probs=105.8
Q ss_pred ccEEEeeecccCCcceeeeccccc--ccc--------------ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNK--FLD--------------NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR 304 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~--~~~--------------~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~ 304 (452)
-+|+|+-.-.-|||||+..++.+. |.. +..-+++.-.....+ ..+.+.+.|+||||+..
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav-----~~~~~~INIvDTPGHAD 80 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAV-----NYNGTRINIVDTPGHAD 80 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEecccee-----ecCCeEEEEecCCCcCC
Confidence 368999999999999999998532 111 111233333333333 44667888999999999
Q ss_pred hhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C-cccHHHHHHHHH---
Q psy14768 305 YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R-QVEINEIEAVCH--- 379 (452)
Q Consensus 305 ~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~-~~~~e~~~~~~~--- 379 (452)
|.--.++.+.-.|+++|++|+.++.-=|.---....+... .+-|+|+||+|... + ....+++..++-
T Consensus 81 FGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~g--------L~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~ 152 (603)
T COG1217 81 FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALG--------LKPIVVINKIDRPDARPDEVVDEVFDLFVELG 152 (603)
T ss_pred ccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcC--------CCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9988888999999999999999875333222233344444 66678899999886 2 122233444443
Q ss_pred ----HcCCCEEEEecCCCCc----------cHHHHHHHHHHHHHHh
Q psy14768 380 ----QYNFMSWIEVSSKEHL----------MIEDSMNFLVDRIICS 411 (452)
Q Consensus 380 ----~~~~~~~~evSAktg~----------nv~~lf~~i~~~i~~~ 411 (452)
++.|+ +++.||+.|. ++.-||+.|++.+-..
T Consensus 153 A~deQLdFP-ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 153 ATDEQLDFP-IVYASARNGTASLDPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred CChhhCCCc-EEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence 34555 8999998863 6778888888776544
No 295
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.83 E-value=3.9e-08 Score=102.16 Aligned_cols=168 Identities=16% Similarity=0.316 Sum_probs=115.6
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcC---
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQN--- 315 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~--- 315 (452)
..-.|+|+|..++|||||+.+|.+. ..+.++.+.+|....+.-.. ......+.+|-..|...+..+....+..
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~---e~~~~~~aLeYty~~v~d~~-~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGI---EDPKKGLALEYTYLDVKDED-RDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhcc---CCCCCCcccceEEEeeccCc-CCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 4568999999999999999998653 34556777777665554321 2234567888887765566555443332
Q ss_pred -CCEEEEEEeCCChhhH-HHHHHHHHHHHhhh-----------------------------hh-----------------
Q psy14768 316 -SDGCIIMFDLTNRKSF-ESVVQWKHDLDSKC-----------------------------IL----------------- 347 (452)
Q Consensus 316 -ad~vIlV~D~t~~~S~-~~~~~~~~~i~~~~-----------------------------~~----------------- 347 (452)
--+||+|+|.+.+..+ +.++.|+..++.+. ..
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 2478889999999664 56677777666555 00
Q ss_pred ------------cCCCCCcEEEEEECCCCCC---C-----cccH----HHHHHHHHHcCCCEEEEecCCCCccHHHHHHH
Q psy14768 348 ------------DNGAMLPCLLLASKCDLPD---R-----QVEI----NEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNF 403 (452)
Q Consensus 348 ------------~~~~~~piilV~NK~Dl~~---~-----~~~~----e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~ 403 (452)
..+-++|++||++|+|... + +... ..++.+|-++|.. +|+||++...|++.++..
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAs-L~yts~~~~~n~~~L~~y 258 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGAS-LIYTSVKEEKNLDLLYKY 258 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCe-EEEeeccccccHHHHHHH
Confidence 0112489999999999753 1 1122 2245566667776 899999999999999999
Q ss_pred HHHHHHHh
Q psy14768 404 LVDRIICS 411 (452)
Q Consensus 404 i~~~i~~~ 411 (452)
|.+.+...
T Consensus 259 i~h~l~~~ 266 (472)
T PF05783_consen 259 ILHRLYGF 266 (472)
T ss_pred HHHHhccC
Confidence 88887654
No 296
>KOG0458|consensus
Probab=98.83 E-value=9.8e-09 Score=105.91 Aligned_cols=141 Identities=16% Similarity=0.216 Sum_probs=100.3
Q ss_pred ccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh
Q psy14768 250 TVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK 329 (452)
Q Consensus 250 nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~ 329 (452)
+.||+++..+++-+.--.+...+++.+.....+.. ....+.|+|+||+..|-..+.....+||+++||+|++...
T Consensus 218 ~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes-----~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~ 292 (603)
T KOG0458|consen 218 NLGKSSFAYAWILDETKEERERGVTMDVKTTWFES-----KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGE 292 (603)
T ss_pred hcCCcceeeeEEeccchhhhhcceeEEeeeEEEec-----CceeEEEecCCCccccchhhhccccccceEEEEEECCcch
Confidence 67999999998887777777888888888777654 6677889999999999888878888999999999998652
Q ss_pred ---hHHHHHH--HHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHH----HH-HHcCC----CEEEEecCCCC
Q psy14768 330 ---SFESVVQ--WKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEA----VC-HQYNF----MSWIEVSSKEH 394 (452)
Q Consensus 330 ---S~~~~~~--~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~----~~-~~~~~----~~~~evSAktg 394 (452)
.|+.-.. -...+.+. ..-.-+||++||.|+++ .+...+++.. |+ +..|| ..|+.||+.+|
T Consensus 293 FE~gfd~~gQtrEha~llr~-----Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~G 367 (603)
T KOG0458|consen 293 FESGFDPGGQTREHALLLRS-----LGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSG 367 (603)
T ss_pred hhhccCCCCchHHHHHHHHH-----cCcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccC
Confidence 2221101 11111222 12356899999999998 4444444433 44 44455 24899999999
Q ss_pred ccHHHH
Q psy14768 395 LMIEDS 400 (452)
Q Consensus 395 ~nv~~l 400 (452)
+|+...
T Consensus 368 eNL~k~ 373 (603)
T KOG0458|consen 368 ENLIKI 373 (603)
T ss_pred Cccccc
Confidence 998655
No 297
>KOG1707|consensus
Probab=98.83 E-value=1.6e-08 Score=104.35 Aligned_cols=161 Identities=20% Similarity=0.288 Sum_probs=118.9
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.+...++|..++|||.|++.|+++.+...+..++...+....+.. .+....+.+.|..-. ....+...- ..||++
T Consensus 425 Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~---~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 425 VFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEV---KGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred eeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeee---ccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 367889999999999999999998877766666666665555555 455666777776644 222222222 689999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
+++||.+++.+|+.+...+..... ....||++|+.|.|+.+ .+...-.-.+++.++++.+-+.+|.++... .
T Consensus 500 ~~~YDsS~p~sf~~~a~v~~~~~~------~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~ 572 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYLAEVYNKYFD------LYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-N 572 (625)
T ss_pred EEecccCCchHHHHHHHHHHHhhh------ccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-c
Confidence 999999999999998765554432 26799999999999987 333333338899999998778888885333 8
Q ss_pred HHHHHHHHHHHHhh
Q psy14768 399 DSMNFLVDRIICSK 412 (452)
Q Consensus 399 ~lf~~i~~~i~~~~ 412 (452)
++|..|+.......
T Consensus 573 ~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 573 ELFIKLATMAQYPH 586 (625)
T ss_pred hHHHHHHHhhhCCC
Confidence 99999998887665
No 298
>KOG0094|consensus
Probab=98.82 E-value=3.2e-09 Score=95.36 Aligned_cols=78 Identities=33% Similarity=0.631 Sum_probs=64.0
Q ss_pred CceeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec-----cccCCCCCCCcccE
Q psy14768 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI-----YCTLSPIQIPTYPI 243 (452)
Q Consensus 169 ~~~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~-----~~~l~~~~~~~~kI 243 (452)
..+|++||||.+||||+|+.||..++|+..|.++|+++|..+.+ .+++..+.+++||+ +..+-+.++....+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~---~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTM---YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEE---EEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence 34899999999999999999999999999999999999999888 56799999999999 44444455555555
Q ss_pred EEeeec
Q psy14768 244 LITGDS 249 (452)
Q Consensus 244 ~ivG~~ 249 (452)
+|+=..
T Consensus 98 aviVyD 103 (221)
T KOG0094|consen 98 AVIVYD 103 (221)
T ss_pred EEEEEe
Confidence 554443
No 299
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.81 E-value=1.6e-08 Score=94.06 Aligned_cols=104 Identities=13% Similarity=0.184 Sum_probs=65.3
Q ss_pred eEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Ccc
Q psy14768 291 PVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQV 369 (452)
Q Consensus 291 ~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~ 369 (452)
...+.+++|.|..--....+ . -+|.+|+|+|+.+..+... .+...+. ..=++++||+|+.+ ...
T Consensus 91 ~~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi~----------~ad~~~~~k~d~~~~~~~ 155 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGIT----------RSDLLVINKIDLAPMVGA 155 (199)
T ss_pred CCCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHhh----------hccEEEEEhhhccccccc
Confidence 35666778887321111111 1 2688999999997665322 1111111 22389999999974 223
Q ss_pred cHHHHHHHHHH-cCCCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768 370 EINEIEAVCHQ-YNFMSWIEVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 370 ~~e~~~~~~~~-~~~~~~~evSAktg~nv~~lf~~i~~~i~ 409 (452)
..+...+..+. ....++++|||++|.|++++|+++.+.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 156 DLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred cHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34444555554 34456999999999999999999986543
No 300
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.80 E-value=3.7e-08 Score=94.69 Aligned_cols=125 Identities=12% Similarity=0.109 Sum_probs=73.7
Q ss_pred CCCCCCcccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh------
Q psy14768 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI------ 306 (452)
Q Consensus 234 ~~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~------ 306 (452)
.+.....++|+++|.+|+|||||+|++++.... .......+.......... ....+.+|||||.....
T Consensus 25 ~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~-----~g~~i~vIDTPGl~~~~~~~~~~ 99 (249)
T cd01853 25 KEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTV-----DGFKLNIIDTPGLLESVMDQRVN 99 (249)
T ss_pred hhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE-----CCeEEEEEECCCcCcchhhHHHH
Confidence 344556799999999999999999999986542 222222333333323222 34568899999965431
Q ss_pred -hh---hhhhhc--CCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768 307 -CM---SRVYYQ--NSDGCIIMFDLTNR-KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366 (452)
Q Consensus 307 -~~---~~~~i~--~ad~vIlV~D~t~~-~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~ 366 (452)
.. ...++. ..|++++|..++.. .++.+. ..+..+...++ ..--..+++|.||+|...
T Consensus 100 ~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~-~llk~I~e~fG--~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 100 RKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDL-PLLRAITDSFG--PSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHH-HHHHHHHHHhC--hhhHhCEEEEEeCCccCC
Confidence 01 112333 57888888766543 233332 23333333211 011256999999999854
No 301
>KOG3905|consensus
Probab=98.80 E-value=5e-08 Score=94.04 Aligned_cols=169 Identities=20% Similarity=0.322 Sum_probs=114.3
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC-
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS- 316 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a- 316 (452)
...-.|+++|+.++|||||+.++-+-. ....+-+..|....+.-.. .+....+.+|=.-|.-....+....+...
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~-RDd~tr~~VWiLDGd~~h~~LLk~al~ats 125 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDED-RDDLTRCNVWILDGDLYHKGLLKFALPATS 125 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEeccccc-chhhhhcceEEecCchhhhhHHhhcccccC
Confidence 345689999999999999999987644 4445555555444332211 33445566776667544444443333322
Q ss_pred ---CEEEEEEeCCChhh-HHHHHHHHHHHHhhh-----------------------------------------------
Q psy14768 317 ---DGCIIMFDLTNRKS-FESVVQWKHDLDSKC----------------------------------------------- 345 (452)
Q Consensus 317 ---d~vIlV~D~t~~~S-~~~~~~~~~~i~~~~----------------------------------------------- 345 (452)
-.+||+.|++++.+ .+.++.|...+.++.
T Consensus 126 ~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~d 205 (473)
T KOG3905|consen 126 LAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSAD 205 (473)
T ss_pred ccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccc
Confidence 37888999999954 577788887776665
Q ss_pred ----------hhcCCCCCcEEEEEECCCCCC--------CcccH----HHHHHHHHHcCCCEEEEecCCCCccHHHHHHH
Q psy14768 346 ----------ILDNGAMLPCLLLASKCDLPD--------RQVEI----NEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNF 403 (452)
Q Consensus 346 ----------~~~~~~~~piilV~NK~Dl~~--------~~~~~----e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~ 403 (452)
....+-++|+++|++|+|... +.... ..++.||-++|.. .|++|+|+..||+-+...
T Consensus 206 e~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Gaa-LiyTSvKE~KNidllyKY 284 (473)
T KOG3905|consen 206 EHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAA-LIYTSVKETKNIDLLYKY 284 (473)
T ss_pred cccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCce-eEEeecccccchHHHHHH
Confidence 011235689999999999842 22222 2355677777877 899999999999999999
Q ss_pred HHHHHHHh
Q psy14768 404 LVDRIICS 411 (452)
Q Consensus 404 i~~~i~~~ 411 (452)
|.+.+.-.
T Consensus 285 ivhr~yG~ 292 (473)
T KOG3905|consen 285 IVHRSYGF 292 (473)
T ss_pred HHHHhcCc
Confidence 98877543
No 302
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.79 E-value=3.8e-08 Score=98.82 Aligned_cols=159 Identities=14% Similarity=0.130 Sum_probs=98.9
Q ss_pred CcccEEEeeecccCCcceeeeccccccc----------------cccCCc---ceeeeEE---EEEEeeecCCeeEEEEE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFL----------------DNYKNT---VGVDFST---KLLSHKKYGGRPVKLQI 296 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~----------------~~~~~t---~~~d~~~---~~i~~~~~~~~~~~l~l 296 (452)
..+.|.++|+.++|||||+|+|.+.-.+ ++..++ ++.+... ..+.+...++-...+.|
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 3578999999999999999999976222 222333 3333333 23333333566678999
Q ss_pred EecCCcchhh--------h--h-------------------hhhhhc-CCCEEEEEE-eCCC----hhhHHHH-HHHHHH
Q psy14768 297 WDIAGQDRYI--------C--M-------------------SRVYYQ-NSDGCIIMF-DLTN----RKSFESV-VQWKHD 340 (452)
Q Consensus 297 ~DtaG~e~~~--------~--~-------------------~~~~i~-~ad~vIlV~-D~t~----~~S~~~~-~~~~~~ 340 (452)
+||+|...-. . + ....+. .+|+.|+|. |.+- ...+... +.|..+
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 9999843211 1 0 123455 899999998 7641 1223333 457777
Q ss_pred HHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCC--CccHHHHHHHHHH
Q psy14768 341 LDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKE--HLMIEDSMNFLVD 406 (452)
Q Consensus 341 i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAkt--g~nv~~lf~~i~~ 406 (452)
++.. ++|+++|+||.|-.. ....+...++.++++.. ++.+|+.. ...|..+|+.++.
T Consensus 176 Lk~~-------~kPfiivlN~~dp~~-~et~~l~~~l~eky~vp-vl~v~c~~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 176 LKEL-------NKPFIILLNSTHPYH-PETEALRQELEEKYDVP-VLAMDVESMRESDILSVLEEVLY 234 (492)
T ss_pred HHhc-------CCCEEEEEECcCCCC-chhHHHHHHHHHHhCCc-eEEEEHHHcCHHHHHHHHHHHHh
Confidence 7765 599999999999432 22444455666777765 66666653 4556666665543
No 303
>KOG0079|consensus
Probab=98.77 E-value=2.3e-09 Score=91.90 Aligned_cols=49 Identities=39% Similarity=0.728 Sum_probs=43.9
Q ss_pred CCcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 103 ~~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
.+.++++|.+||||||||||+|+.||..+.|...|+-|+|+||..+.++
T Consensus 3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~ 51 (198)
T KOG0079|consen 3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVD 51 (198)
T ss_pred ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEee
Confidence 3557789999999999999999999999999999999999999876653
No 304
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.76 E-value=2.2e-08 Score=97.35 Aligned_cols=81 Identities=15% Similarity=0.145 Sum_probs=57.2
Q ss_pred EEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCe---------------eEEEEEEecCCcchh--
Q psy14768 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR---------------PVKLQIWDIAGQDRY-- 305 (452)
Q Consensus 243 I~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~---------------~~~l~l~DtaG~e~~-- 305 (452)
|+++|.||||||||+|++.+........+.++.+...-.+.+ .+. ...+.++|+||..+-
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v---~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~ 77 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPV---PDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 77 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEe---ccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCc
Confidence 579999999999999999997666666677776665545444 222 135889999995421
Q ss_pred --hhhhh---hhhcCCCEEEEEEeCC
Q psy14768 306 --ICMSR---VYYQNSDGCIIMFDLT 326 (452)
Q Consensus 306 --~~~~~---~~i~~ad~vIlV~D~t 326 (452)
..+.. ..++++|++++|+|+.
T Consensus 78 ~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 78 KGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 12222 2367899999999974
No 305
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.74 E-value=2.2e-08 Score=93.80 Aligned_cols=101 Identities=13% Similarity=0.170 Sum_probs=60.0
Q ss_pred EEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cccc
Q psy14768 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVE 370 (452)
Q Consensus 292 ~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~ 370 (452)
..+.|++|.|.-. . ...+.-..+..+.|+|+.+...... .... + ...|.++|+||||+.+ ....
T Consensus 103 ~d~IiIEt~G~l~-~--~~~~~~~~~~~i~Vvd~~~~d~~~~--~~~~-~---------~~~a~iiv~NK~Dl~~~~~~~ 167 (207)
T TIGR00073 103 IDLLFIENVGNLV-C--PADFDLGEHMRVVLLSVTEGDDKPL--KYPG-M---------FKEADLIVINKADLAEAVGFD 167 (207)
T ss_pred CCEEEEecCCCcC-C--CcccccccCeEEEEEecCcccchhh--hhHh-H---------HhhCCEEEEEHHHccccchhh
Confidence 4566777777200 0 0111123456667888875432111 1011 1 1267899999999975 2222
Q ss_pred HHHHHHHHHHc-CCCEEEEecCCCCccHHHHHHHHHHH
Q psy14768 371 INEIEAVCHQY-NFMSWIEVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 371 ~e~~~~~~~~~-~~~~~~evSAktg~nv~~lf~~i~~~ 407 (452)
.+...+..++. ...+++++||+++.|++++|+++.+.
T Consensus 168 ~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 168 VEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 33444444443 33459999999999999999999874
No 306
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.73 E-value=8.1e-08 Score=95.80 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=90.4
Q ss_pred eeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh-------hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECC
Q psy14768 290 RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK-------SFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362 (452)
Q Consensus 290 ~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~-------S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~ 362 (452)
..+.+.+||++||+..+..|..++.+++++|+|+|+++.. ..+.+...+..++..++.....++|++|++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 4678999999999999999999999999999999999742 124445555555555444456789999999999
Q ss_pred CCCC----------------C-cccHHHHHHHHHHc---------CCCEEEEecCCCCccHHHHHHHHHHHHHHhh
Q psy14768 363 DLPD----------------R-QVEINEIEAVCHQY---------NFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412 (452)
Q Consensus 363 Dl~~----------------~-~~~~e~~~~~~~~~---------~~~~~~evSAktg~nv~~lf~~i~~~i~~~~ 412 (452)
|+.+ . ....+.+..+.... .....++|+|.+..++..+|..+...++...
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 9632 1 22344444433321 1222478999999999999999999988765
No 307
>KOG0087|consensus
Probab=98.71 E-value=2e-08 Score=91.44 Aligned_cols=52 Identities=35% Similarity=0.657 Sum_probs=46.6
Q ss_pred CCCCcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 101 RPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 101 ~~~~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
.++..+++|||++|||++||||-|+-||..+.|..+..+|||++|..+.+..
T Consensus 7 ~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~v 58 (222)
T KOG0087|consen 7 KSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNV 58 (222)
T ss_pred CccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceee
Confidence 3467789999999999999999999999999999999999999998877543
No 308
>KOG3886|consensus
Probab=98.70 E-value=7e-08 Score=89.07 Aligned_cols=120 Identities=21% Similarity=0.298 Sum_probs=84.8
Q ss_pred ccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh-----hhhhhhhc
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI-----CMSRVYYQ 314 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~-----~~~~~~i~ 314 (452)
-||+++|++|+|||++-..+..+. ......++.+.|+....+.+ - ..+.+.+||.+||+.+- ......++
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rf---l-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~ 80 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRF---L-GNLVLNLWDCGGQEEFMENYLSSQEDNIFR 80 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhh---h-hhheeehhccCCcHHHHHHHHhhcchhhhe
Confidence 589999999999999865544322 22334456666666555443 2 23678999999998542 34566899
Q ss_pred CCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768 315 NSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366 (452)
Q Consensus 315 ~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~ 366 (452)
+.+++|+|||+...+-..|+..+...++..+ ...+...+.+...|.||..
T Consensus 81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll--~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREMEKDFHYYQKCLEALL--QNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred eheeeeeeeeccchhhhhhHHHHHHHHHHHH--hcCCcceEEEEEeechhcc
Confidence 9999999999998776677766555444432 2356777889999999975
No 309
>KOG0461|consensus
Probab=98.70 E-value=8.9e-08 Score=93.00 Aligned_cols=168 Identities=19% Similarity=0.163 Sum_probs=103.3
Q ss_pred cccEEEeeecccCCcceeeecccc-------ccccccCCcceeeeEEEEEEee----ecCCeeEEEEEEecCCcchhhhh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQN-------KFLDNYKNTVGVDFSTKLLSHK----KYGGRPVKLQIWDIAGQDRYICM 308 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~-------~~~~~~~~t~~~d~~~~~i~~~----~~~~~~~~l~l~DtaG~e~~~~~ 308 (452)
.+++.++|.-.+|||+|.+++..- ....+...+++.|.....+.+. .-.++..++.++|++|+...-..
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt 86 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT 86 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence 478899999999999999988741 1112223445555554444431 11456678899999998543322
Q ss_pred hhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHH-HHHHH---HHc
Q psy14768 309 SRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINE-IEAVC---HQY 381 (452)
Q Consensus 309 ~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~-~~~~~---~~~ 381 (452)
......-.|..|+|+|++.+..-|..+.++---..+ ...|+|+||+|+.. ++...++ ..++. +..
T Consensus 87 iiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c--------~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 87 IIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC--------KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHhhhheeeeeeEEEehhcccccccchhhhhhhhhc--------cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 222233458899999999886666655432211111 55788899998764 2222222 22222 222
Q ss_pred ---CCCEEEEecCCCC----ccHHHHHHHHHHHHHHhhhhh
Q psy14768 382 ---NFMSWIEVSSKEH----LMIEDSMNFLVDRIICSKRME 415 (452)
Q Consensus 382 ---~~~~~~evSAktg----~nv~~lf~~i~~~i~~~~~~~ 415 (452)
+..+++++||+.| +.|.++.+.+-.++.+.++.+
T Consensus 159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~ 199 (522)
T KOG0461|consen 159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDE 199 (522)
T ss_pred CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCC
Confidence 3356899999999 677777777777766655543
No 310
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.69 E-value=8.6e-08 Score=88.36 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=67.4
Q ss_pred hhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHH-----H
Q psy14768 305 YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVC-----H 379 (452)
Q Consensus 305 ~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~-----~ 379 (452)
+..++..+++++|++|+|+|+++.... |...+... ..++|+++|+||+|+.......+....+. +
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-----~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 93 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-----GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAA 93 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-----cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHh
Confidence 567778899999999999999876421 22222111 23589999999999975333444444444 2
Q ss_pred HcCC--CEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768 380 QYNF--MSWIEVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 380 ~~~~--~~~~evSAktg~nv~~lf~~i~~~i~ 409 (452)
..+. ..++++||+++.|++++++.+.+.+.
T Consensus 94 ~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 94 GLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred hcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 2332 34899999999999999999988763
No 311
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.68 E-value=1.2e-08 Score=97.57 Aligned_cols=110 Identities=19% Similarity=0.173 Sum_probs=58.7
Q ss_pred EEEEEecCCcchhhhhhhhh------h--cCCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEEC
Q psy14768 293 KLQIWDIAGQDRYICMSRVY------Y--QNSDGCIIMFDLTNR---KSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361 (452)
Q Consensus 293 ~l~l~DtaG~e~~~~~~~~~------i--~~ad~vIlV~D~t~~---~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK 361 (452)
.+.|+|||||-++...+... + ...-++++++|+.-. ..|-.. ++..+... ...+.|.|.|+||
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~--~L~s~s~~----~~~~lP~vnvlsK 165 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSS--LLLSLSIM----LRLELPHVNVLSK 165 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHH--HHHHHHHH----HHHTSEEEEEE--
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHH--HHHHHHHH----hhCCCCEEEeeec
Confidence 68899999998766554332 2 234588889997643 333222 22222111 1124999999999
Q ss_pred CCCCCCc-----------------------ccHHHHHHHHHHcCCC-EEEEecCCCCccHHHHHHHHHHHH
Q psy14768 362 CDLPDRQ-----------------------VEINEIEAVCHQYNFM-SWIEVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 362 ~Dl~~~~-----------------------~~~e~~~~~~~~~~~~-~~~evSAktg~nv~~lf~~i~~~i 408 (452)
+|+.+.. ...+.+.++...++.. .|+.+|+++++++.+++..+-+++
T Consensus 166 ~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 166 IDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 9997511 0011122222333555 689999999999999999887664
No 312
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.68 E-value=7.3e-08 Score=97.03 Aligned_cols=138 Identities=14% Similarity=0.099 Sum_probs=96.3
Q ss_pred cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh-------hHHHHHHHHHHH
Q psy14768 269 YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK-------SFESVVQWKHDL 341 (452)
Q Consensus 269 ~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~-------S~~~~~~~~~~i 341 (452)
..+|+|.... .+.+ ..+.+.+||.+||+.++..|..++.+++++|+|+|+++.. .-..+...+..+
T Consensus 168 r~~T~Gi~~~--~f~~-----~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f 240 (342)
T smart00275 168 RVPTTGIQET--AFIV-----KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLF 240 (342)
T ss_pred eCCccceEEE--EEEE-----CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHH
Confidence 4466664433 3333 4467899999999999999999999999999999999742 123444555555
Q ss_pred HhhhhhcCCCCCcEEEEEECCCCCC----------------CcccHHHHHHHHHH-----cC-----CCEEEEecCCCCc
Q psy14768 342 DSKCILDNGAMLPCLLLASKCDLPD----------------RQVEINEIEAVCHQ-----YN-----FMSWIEVSSKEHL 395 (452)
Q Consensus 342 ~~~~~~~~~~~~piilV~NK~Dl~~----------------~~~~~e~~~~~~~~-----~~-----~~~~~evSAktg~ 395 (452)
+..++.....++|++|++||.|+.. .....+.+..+... .. ....++|+|.+-.
T Consensus 241 ~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~ 320 (342)
T smart00275 241 ESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTR 320 (342)
T ss_pred HHHHcCccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccH
Confidence 5555555667899999999999742 11233333333322 11 1334789999999
Q ss_pred cHHHHHHHHHHHHHHhhh
Q psy14768 396 MIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 396 nv~~lf~~i~~~i~~~~~ 413 (452)
++..+|+.+...++....
T Consensus 321 ~~~~v~~~v~~~I~~~~l 338 (342)
T smart00275 321 NIRVVFDAVKDIILQRNL 338 (342)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998887653
No 313
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.65 E-value=9.2e-08 Score=85.18 Aligned_cols=94 Identities=16% Similarity=0.106 Sum_probs=64.1
Q ss_pred hhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCE
Q psy14768 306 ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMS 385 (452)
Q Consensus 306 ~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~ 385 (452)
+.+..+.++++|++|+|+|++++...++. .+...+. ..++|+++|+||+|+.+... .+....+....+..
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~-------~~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~- 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL-------ELGKKLLIVLNKADLVPKEV-LEKWKSIKESEGIP- 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH-------hCCCcEEEEEEhHHhCCHHH-HHHHHHHHHhCCCc-
Confidence 45567788899999999999887544432 1222221 12489999999999864211 11122333444444
Q ss_pred EEEecCCCCccHHHHHHHHHHHHH
Q psy14768 386 WIEVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 386 ~~evSAktg~nv~~lf~~i~~~i~ 409 (452)
++++||+++.|++++++.+.+.+.
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEEEEccccccHHHHHHHHHHHHh
Confidence 899999999999999999987764
No 314
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=1.7e-07 Score=90.51 Aligned_cols=170 Identities=14% Similarity=0.178 Sum_probs=106.3
Q ss_pred CCcccEEEeeecccCCcceeeeccc---cccccccCCcceeeeEEEEEEeee------------------cC---CeeEE
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQ---NKFLDNYKNTVGVDFSTKLLSHKK------------------YG---GRPVK 293 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~---~~~~~~~~~t~~~d~~~~~i~~~~------------------~~---~~~~~ 293 (452)
..+++|.++|.-.-|||||..++.+ .++..+...+++.....-...+.. ++ .-.-.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 3568899999999999999999986 333333333332211111111100 00 11235
Q ss_pred EEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCC---ccc
Q psy14768 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDR---QVE 370 (452)
Q Consensus 294 l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~---~~~ 370 (452)
+.|+|.+|++-.-+.+-.-..--|++|||++++++..--....-+..++-. .-+-+|||-||.||..+ ...
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi------gik~iiIvQNKIDlV~~E~AlE~ 161 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII------GIKNIIIVQNKIDLVSRERALEN 161 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh------ccceEEEEecccceecHHHHHHH
Confidence 779999999876544433333459999999999863221111112222221 12569999999999872 345
Q ss_pred HHHHHHHHHHc--CCCEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 371 INEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 371 ~e~~~~~~~~~--~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
++++++|.+-- ...+++.+||..+.||+-+++.|.+.+-...+
T Consensus 162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r 206 (415)
T COG5257 162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER 206 (415)
T ss_pred HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence 56666666553 22458999999999999999999887765544
No 315
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.63 E-value=1.9e-07 Score=87.82 Aligned_cols=162 Identities=10% Similarity=0.093 Sum_probs=93.9
Q ss_pred ccEEEeeecccCCcceeeeccccccccccC--CcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh----hh---hh-
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYK--NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI----CM---SR- 310 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~--~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~----~~---~~- 310 (452)
.+|+++|..|+||||++|.+++........ ...+.........+ ++ ..+.++||||...-. .+ ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~---~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~ 75 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV---DG--RQVTVIDTPGLFDSDGSDEEIIREIKR 75 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE---TT--EEEEEEE--SSEETTEEHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee---cc--eEEEEEeCCCCCCCcccHHHHHHHHHH
Confidence 368999999999999999999865543321 22233333333344 45 456788999942211 11 11
Q ss_pred ---hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcc--------cHHHHHHHHH
Q psy14768 311 ---VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQV--------EINEIEAVCH 379 (452)
Q Consensus 311 ---~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~--------~~e~~~~~~~ 379 (452)
......|++|||+.+. ..+..+... +..+...++.. .-.-+|||.+.+|...... ..+.++++.+
T Consensus 76 ~l~~~~~g~ha~llVi~~~-r~t~~~~~~-l~~l~~~FG~~--~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~ 151 (212)
T PF04548_consen 76 CLSLCSPGPHAFLLVIPLG-RFTEEDREV-LELLQEIFGEE--IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIE 151 (212)
T ss_dssp HHHHTTT-ESEEEEEEETT-B-SHHHHHH-HHHHHHHHCGG--GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCeEEEEEEecC-cchHHHHHH-HHHHHHHccHH--HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhh
Confidence 1244689999999998 444444332 33333332211 1134888889888665111 1134667788
Q ss_pred HcCCCEEEEecCC------CCccHHHHHHHHHHHHHHhh
Q psy14768 380 QYNFMSWIEVSSK------EHLMIEDSMNFLVDRIICSK 412 (452)
Q Consensus 380 ~~~~~~~~evSAk------tg~nv~~lf~~i~~~i~~~~ 412 (452)
+.+.. |+..+.+ ....+.+||+.+-+.+.+..
T Consensus 152 ~c~~R-~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 152 KCGGR-YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp HTTTC-EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCCE-EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 88876 7777766 23568888888888877775
No 316
>KOG0078|consensus
Probab=98.62 E-value=3.5e-08 Score=90.11 Aligned_cols=51 Identities=35% Similarity=0.636 Sum_probs=47.3
Q ss_pred CcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeeccc
Q psy14768 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 154 (452)
Q Consensus 104 ~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (452)
.+++++||++|||+||||||++.||.++.|...++.|+|+||..+.+....
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g 58 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDG 58 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCC
Confidence 668899999999999999999999999999999999999999998876554
No 317
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=4e-07 Score=91.67 Aligned_cols=156 Identities=15% Similarity=0.142 Sum_probs=112.4
Q ss_pred cEEEeeecccCCcceeeeccc---cccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 242 PILITGDSTVGKTSYVQGFVQ---NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~---~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
-|...|.-.-|||+|+..+.+ +.....-.-+++.|........ .+ ..+.|+|++|++++-..+...+...|.
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~---~d--~~~~fIDvpgh~~~i~~miag~~~~d~ 76 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL---ED--GVMGFIDVPGHPDFISNLLAGLGGIDY 76 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC---CC--CceEEeeCCCcHHHHHHHHhhhcCCce
Confidence 356678888999999999886 3444555567777766665544 33 367888999999988777777788999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcC--CCEEEEecCCCCcc
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYN--FMSWIEVSSKEHLM 396 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~--~~~~~evSAktg~n 396 (452)
++||+|++++...+..+... .+... ...-.++|++|.|..+.+...+..+++..... ..++|.+|+++|++
T Consensus 77 alLvV~~deGl~~qtgEhL~-iLdll------gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~G 149 (447)
T COG3276 77 ALLVVAADEGLMAQTGEHLL-ILDLL------GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRG 149 (447)
T ss_pred EEEEEeCccCcchhhHHHHH-HHHhc------CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCC
Confidence 99999999887766665422 12111 12446999999999873333444444444443 34579999999999
Q ss_pred HHHHHHHHHHHHH
Q psy14768 397 IEDSMNFLVDRII 409 (452)
Q Consensus 397 v~~lf~~i~~~i~ 409 (452)
|+++-+.+.....
T Consensus 150 I~~Lk~~l~~L~~ 162 (447)
T COG3276 150 IEELKNELIDLLE 162 (447)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999998875
No 318
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=2.6e-07 Score=92.58 Aligned_cols=131 Identities=9% Similarity=0.192 Sum_probs=91.3
Q ss_pred ccEEEeeecccCCcceeeeccc-cccccc---------------c----CCcceeeeEEEEEEeeecCCeeEEEEEEecC
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQ-NKFLDN---------------Y----KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~-~~~~~~---------------~----~~t~~~d~~~~~i~~~~~~~~~~~l~l~Dta 300 (452)
-..+||..|.+|||||..+++- ...+.. . ...-|+++.+...++ +...+.++|.|||
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF---~Y~~~~iNLLDTP 89 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQF---DYADCLVNLLDTP 89 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEe---ccCCeEEeccCCC
Confidence 4678999999999999988872 111100 0 001244455555555 6677889999999
Q ss_pred CcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHH
Q psy14768 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQ 380 (452)
Q Consensus 301 G~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~ 380 (452)
|++.|+.-..+.+..+|.+++|+|+..+..-+.++.+ ++- ...++||+=++||+|... ....+.+.++-+.
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLf--eVc------rlR~iPI~TFiNKlDR~~-rdP~ELLdEiE~~ 160 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLF--EVC------RLRDIPIFTFINKLDREG-RDPLELLDEIEEE 160 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHHHHHH--HHH------hhcCCceEEEeecccccc-CChHHHHHHHHHH
Confidence 9999998888888999999999999987655544332 222 235699999999999764 3345566666666
Q ss_pred cCC
Q psy14768 381 YNF 383 (452)
Q Consensus 381 ~~~ 383 (452)
+++
T Consensus 161 L~i 163 (528)
T COG4108 161 LGI 163 (528)
T ss_pred hCc
Confidence 544
No 319
>KOG0092|consensus
Probab=98.52 E-value=1.6e-07 Score=84.57 Aligned_cols=75 Identities=33% Similarity=0.615 Sum_probs=62.5
Q ss_pred CceeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec-----cccCCCCCCCcccE
Q psy14768 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI-----YCTLSPIQIPTYPI 243 (452)
Q Consensus 169 ~~~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~-----~~~l~~~~~~~~kI 243 (452)
..+||++|||.+||||+|+.||+.++|.+...++++.-|..+.+ .+++..+.+.|||+ +..+.+.++.....
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv---~~~~~~ikfeIWDTAGQERy~slapMYyRgA~A 80 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTV---TVDDNTIKFEIWDTAGQERYHSLAPMYYRGANA 80 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEE---EeCCcEEEEEEEEcCCcccccccccceecCCcE
Confidence 45899999999999999999999999999999999999999888 45688999999999 45555555555555
Q ss_pred EEe
Q psy14768 244 LIT 246 (452)
Q Consensus 244 ~iv 246 (452)
+|+
T Consensus 81 Aiv 83 (200)
T KOG0092|consen 81 AIV 83 (200)
T ss_pred EEE
Confidence 444
No 320
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.50 E-value=2.5e-07 Score=83.08 Aligned_cols=63 Identities=17% Similarity=0.234 Sum_probs=47.1
Q ss_pred EEEEEecCCcch----hhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECC
Q psy14768 293 KLQIWDIAGQDR----YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362 (452)
Q Consensus 293 ~l~l~DtaG~e~----~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~ 362 (452)
.+.|+||||... ...+...++..+|++|+|.+++...+-.+...+....... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~-------~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD-------KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT-------CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC-------CCeEEEEEcCC
Confidence 377999999642 3356677889999999999999987777776666666554 24489999984
No 321
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.48 E-value=1.8e-07 Score=94.12 Aligned_cols=165 Identities=19% Similarity=0.188 Sum_probs=81.8
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceee-eEEEEEEeeecCCeeEEEEEEecCCcch--hhh---hhhh
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD-FSTKLLSHKKYGGRPVKLQIWDIAGQDR--YIC---MSRV 311 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d-~~~~~i~~~~~~~~~~~l~l~DtaG~e~--~~~---~~~~ 311 (452)
...++|+|+|.+|+|||||||.+.+-.-.....+.+|.. .......+. ..+.-.+.+||.||.-. |.. +...
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~--~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYP--HPKFPNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE---SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCC--CCCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 346899999999999999999997622121222222210 000111111 11112488999999532 211 1122
Q ss_pred hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC--C------Cc----ccHHHHHHHHH
Q psy14768 312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP--D------RQ----VEINEIEAVCH 379 (452)
Q Consensus 312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~--~------~~----~~~e~~~~~~~ 379 (452)
-+...|.+|++.+ +..+..++..+...-.. ++|+++|-+|.|.. . +. ...+++++.+.
T Consensus 111 ~~~~yD~fiii~s--~rf~~ndv~La~~i~~~--------gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~ 180 (376)
T PF05049_consen 111 KFYRYDFFIIISS--ERFTENDVQLAKEIQRM--------GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCL 180 (376)
T ss_dssp TGGG-SEEEEEES--SS--HHHHHHHHHHHHT--------T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHH
T ss_pred cccccCEEEEEeC--CCCchhhHHHHHHHHHc--------CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHH
Confidence 3667898888765 33444555444333333 49999999999951 0 11 11223333322
Q ss_pred H----cCC--CEEEEecCCC--CccHHHHHHHHHHHHHHhhhh
Q psy14768 380 Q----YNF--MSWIEVSSKE--HLMIEDSMNFLVDRIICSKRM 414 (452)
Q Consensus 380 ~----~~~--~~~~evSAkt--g~nv~~lf~~i~~~i~~~~~~ 414 (452)
+ .+. +++|-+|..+ ..++..+.+.+.+.+-..++.
T Consensus 181 ~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~ 223 (376)
T PF05049_consen 181 ENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH 223 (376)
T ss_dssp HHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred HHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence 2 232 4579999988 356778888888777776664
No 322
>PRK00098 GTPase RsgA; Reviewed
Probab=98.47 E-value=3.9e-07 Score=90.16 Aligned_cols=86 Identities=17% Similarity=0.208 Sum_probs=64.2
Q ss_pred hhcCCCEEEEEEeCCChhhHHH-HHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEec
Q psy14768 312 YYQNSDGCIIMFDLTNRKSFES-VVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVS 390 (452)
Q Consensus 312 ~i~~ad~vIlV~D~t~~~S~~~-~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evS 390 (452)
.+.++|++|+|+|++++.++.. +..|+..+.. .++|++||+||+|+.+.....+...++.+.+++. ++++|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~-------~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~-v~~vS 148 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA-------NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYD-VLELS 148 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCe-EEEEe
Confidence 4689999999999988866544 4667666543 3589999999999964221223344455666765 89999
Q ss_pred CCCCccHHHHHHHHH
Q psy14768 391 SKEHLMIEDSMNFLV 405 (452)
Q Consensus 391 Aktg~nv~~lf~~i~ 405 (452)
|+++.|++++++.+.
T Consensus 149 A~~g~gi~~L~~~l~ 163 (298)
T PRK00098 149 AKEGEGLDELKPLLA 163 (298)
T ss_pred CCCCccHHHHHhhcc
Confidence 999999999998874
No 323
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.46 E-value=8.8e-07 Score=87.75 Aligned_cols=105 Identities=10% Similarity=0.042 Sum_probs=65.7
Q ss_pred eeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcc
Q psy14768 290 RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQV 369 (452)
Q Consensus 290 ~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~ 369 (452)
..+.+.|+||+|.... ....+..+|.++++.+.. +.+++......+. .+|.++|+||+|+.....
T Consensus 125 ~g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~---------~~~~ivv~NK~Dl~~~~~ 189 (300)
T TIGR00750 125 AGYDVIIVETVGVGQS---EVDIANMADTFVVVTIPG---TGDDLQGIKAGLM---------EIADIYVVNKADGEGATN 189 (300)
T ss_pred CCCCEEEEeCCCCchh---hhHHHHhhceEEEEecCC---ccHHHHHHHHHHh---------hhccEEEEEcccccchhH
Confidence 3578899999985421 123567789888885433 3344444333332 267899999999975111
Q ss_pred cH---H----HHHHHHHH-cCC-CEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768 370 EI---N----EIEAVCHQ-YNF-MSWIEVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 370 ~~---e----~~~~~~~~-~~~-~~~~evSAktg~nv~~lf~~i~~~i~ 409 (452)
.. . ....+... .++ .+++++||+++.|++++++++.+...
T Consensus 190 ~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 190 VTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 00 0 01111111 122 24899999999999999999988754
No 324
>PRK12289 GTPase RsgA; Reviewed
Probab=98.46 E-value=6.5e-07 Score=90.21 Aligned_cols=92 Identities=16% Similarity=0.194 Sum_probs=67.0
Q ss_pred hhhhhhhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCE
Q psy14768 307 CMSRVYYQNSDGCIIMFDLTNRK-SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMS 385 (452)
Q Consensus 307 ~~~~~~i~~ad~vIlV~D~t~~~-S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~ 385 (452)
.+....+.++|++++|+|+.++. .+..+..|+..+.. .++|++||+||+||.+... .+...+....+++.
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~-------~~ip~ILVlNK~DLv~~~~-~~~~~~~~~~~g~~- 151 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES-------TGLEIVLCLNKADLVSPTE-QQQWQDRLQQWGYQ- 151 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEEchhcCChHH-HHHHHHHHHhcCCe-
Confidence 34455689999999999999775 45566777765533 3599999999999974111 12223333466775
Q ss_pred EEEecCCCCccHHHHHHHHHHH
Q psy14768 386 WIEVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 386 ~~evSAktg~nv~~lf~~i~~~ 407 (452)
++++||+++.|++++++.+...
T Consensus 152 v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 152 PLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEEEEcCCCCCHHHHhhhhccc
Confidence 8999999999999999988654
No 325
>KOG0393|consensus
Probab=98.44 E-value=2.2e-07 Score=85.15 Aligned_cols=85 Identities=29% Similarity=0.548 Sum_probs=73.7
Q ss_pred ceeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeeccccc-CCccceeeeeec-----cccCCCCCCCcccE
Q psy14768 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY-GGRPVKLQIWDI-----YCTLSPIQIPTYPI 243 (452)
Q Consensus 170 ~~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~i-d~~~~~l~i~d~-----~~~l~~~~~~~~kI 243 (452)
.+++++|||+.+|||+|+..|+.+.|..+|.|++..++...+. + ++..+++.+||+ |+.+++.++....+
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~----V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdv 79 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVT----VDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDV 79 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEE----ecCCCEEEEeeeecCCCcccccccccCCCCCCE
Confidence 4789999999999999999999999999999999977766553 5 499999999999 88899999988899
Q ss_pred EEeeecccCCcceee
Q psy14768 244 LITGDSTVGKTSYVQ 258 (452)
Q Consensus 244 ~ivG~~nvGKSSLin 258 (452)
+++..+-+-+.||.|
T Consensus 80 fl~cfsv~~p~S~~n 94 (198)
T KOG0393|consen 80 FLLCFSVVSPESFEN 94 (198)
T ss_pred EEEEEEcCChhhHHH
Confidence 998877666666654
No 326
>KOG0086|consensus
Probab=98.44 E-value=1.9e-07 Score=80.57 Aligned_cols=49 Identities=33% Similarity=0.708 Sum_probs=42.3
Q ss_pred CCcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 103 ~~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
+.+++++|++++|..|.|||||+++|+.++|..+...|||++|..+.+.
T Consensus 4 EtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIin 52 (214)
T KOG0086|consen 4 ETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVN 52 (214)
T ss_pred hhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeee
Confidence 5678899999999999999999999999999888888888888765543
No 327
>PRK13768 GTPase; Provisional
Probab=98.44 E-value=9.7e-07 Score=85.25 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=70.2
Q ss_pred EEEEEecCCcchh---hhhhhhh---hcC--CCEEEEEEeCCChhhHHHHHH--HHHHHHhhhhhcCCCCCcEEEEEECC
Q psy14768 293 KLQIWDIAGQDRY---ICMSRVY---YQN--SDGCIIMFDLTNRKSFESVVQ--WKHDLDSKCILDNGAMLPCLLLASKC 362 (452)
Q Consensus 293 ~l~l~DtaG~e~~---~~~~~~~---i~~--ad~vIlV~D~t~~~S~~~~~~--~~~~i~~~~~~~~~~~~piilV~NK~ 362 (452)
.+.+|||+|+.++ +..+..+ +.. ++++++|+|++...+..+... |+...... ..++|+++|+||+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-----~~~~~~i~v~nK~ 172 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-----RLGLPQIPVLNKA 172 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-----HcCCCEEEEEEhH
Confidence 5789999998664 3333333 333 899999999977655444432 22222211 1359999999999
Q ss_pred CCCCCcccHHHHHH----------------------------HHHHcC-CCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768 363 DLPDRQVEINEIEA----------------------------VCHQYN-FMSWIEVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 363 Dl~~~~~~~e~~~~----------------------------~~~~~~-~~~~~evSAktg~nv~~lf~~i~~~i 408 (452)
|+..... .+.... ..+..+ ...++++||+++.+++++++++.+.+
T Consensus 173 D~~~~~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 173 DLLSEEE-LERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred hhcCchh-HHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 9875111 111111 122333 23589999999999999999997765
No 328
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.44 E-value=7.4e-07 Score=90.48 Aligned_cols=96 Identities=17% Similarity=0.220 Sum_probs=71.4
Q ss_pred cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHH----
Q psy14768 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAV---- 377 (452)
Q Consensus 302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~---- 377 (452)
.+.|..+...+++.++++++|+|+.+.. ..|...+.+.. .++|+++|+||+|+..+....+.+.+|
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~ 119 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKR 119 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHH
Confidence 5678888888889999999999997654 22444444441 257999999999997644444555444
Q ss_pred HHHcCCC--EEEEecCCCCccHHHHHHHHHHH
Q psy14768 378 CHQYNFM--SWIEVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 378 ~~~~~~~--~~~evSAktg~nv~~lf~~i~~~ 407 (452)
++..++. .++++||++|.|++++|+.+.+.
T Consensus 120 ~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 120 AKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 5566653 48999999999999999998664
No 329
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.44 E-value=4.5e-07 Score=83.18 Aligned_cols=39 Identities=38% Similarity=0.594 Sum_probs=34.4
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
..+||++||++|||||||++||+.+.|..+|.||++.++
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~ 42 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY 42 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee
Confidence 358999999999999999999999999888888886544
No 330
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.44 E-value=3.4e-07 Score=82.68 Aligned_cols=45 Identities=20% Similarity=0.471 Sum_probs=39.7
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeee
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~ 151 (452)
..+||++||++|||||||++||+++.|. .+|.+|++.++....+.
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~ 48 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVE 48 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEE
Confidence 4589999999999999999999999998 89999999888655443
No 331
>KOG0410|consensus
Probab=98.43 E-value=1.5e-07 Score=90.94 Aligned_cols=159 Identities=13% Similarity=0.112 Sum_probs=102.1
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc---------hhhhh
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD---------RYICM 308 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e---------~~~~~ 308 (452)
....-|+++|..|+|||||+++|..-.......-..+.|........+ ++. .+.+.||-|-- .|++.
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp--sg~--~vlltDTvGFisdLP~~LvaAF~AT 251 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP--SGN--FVLLTDTVGFISDLPIQLVAAFQAT 251 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC--CCc--EEEEeechhhhhhCcHHHHHHHHHH
Confidence 345679999999999999999998644444443444444444444442 333 45567999832 22222
Q ss_pred hhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEE
Q psy14768 309 SRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIE 388 (452)
Q Consensus 309 ~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~e 388 (452)
. .-+..+|.++-|.|++.+.-.+..+..+..+...--......--++=|-||.|..+.....| +.+ -+-
T Consensus 252 L-eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E-------~n~---~v~ 320 (410)
T KOG0410|consen 252 L-EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE-------KNL---DVG 320 (410)
T ss_pred H-HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc-------cCC---ccc
Confidence 1 22578999999999999987777666666666651001111222556778888765222211 111 377
Q ss_pred ecCCCCccHHHHHHHHHHHHHHh
Q psy14768 389 VSSKEHLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 389 vSAktg~nv~~lf~~i~~~i~~~ 411 (452)
+||++|++++++...+-.++...
T Consensus 321 isaltgdgl~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 321 ISALTGDGLEELLKAEETKVASE 343 (410)
T ss_pred cccccCccHHHHHHHHHHHhhhh
Confidence 89999999999998887776654
No 332
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.43 E-value=3.6e-07 Score=86.46 Aligned_cols=37 Identities=35% Similarity=0.599 Sum_probs=32.4
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
+||+|||++|||||+|++||+++.|..+|.||++.++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~ 38 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY 38 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce
Confidence 6899999999999999999999999888888885444
No 333
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.42 E-value=5.3e-07 Score=82.30 Aligned_cols=37 Identities=35% Similarity=0.579 Sum_probs=32.8
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
+||++||++|||||||++||+++.|..+|.+|++.++
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~ 38 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY 38 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE
Confidence 6899999999999999999999999888888886544
No 334
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.42 E-value=8.7e-07 Score=87.19 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=67.4
Q ss_pred hhhhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEE
Q psy14768 310 RVYYQNSDGCIIMFDLTNRK-SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIE 388 (452)
Q Consensus 310 ~~~i~~ad~vIlV~D~t~~~-S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~e 388 (452)
...+.++|++++|+|+.++. ++..+..|+..+... ++|++||+||+||.+.. .......+....+.. +++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~-------~ip~iIVlNK~DL~~~~-~~~~~~~~~~~~g~~-v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA-------GIEPVIVLTKADLLDDE-EEELELVEALALGYP-VLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc-------CCCEEEEEEHHHCCChH-HHHHHHHHHHhCCCe-EEE
Confidence 34588999999999999987 888888888776643 48999999999997521 111223334455654 899
Q ss_pred ecCCCCccHHHHHHHHHH
Q psy14768 389 VSSKEHLMIEDSMNFLVD 406 (452)
Q Consensus 389 vSAktg~nv~~lf~~i~~ 406 (452)
+||+++.|+++++..+..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999988764
No 335
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.42 E-value=1.1e-06 Score=83.79 Aligned_cols=68 Identities=13% Similarity=0.146 Sum_probs=46.0
Q ss_pred EEEEEEecCCcchh-------------hhhhhhhhcC-CCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEE
Q psy14768 292 VKLQIWDIAGQDRY-------------ICMSRVYYQN-SDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357 (452)
Q Consensus 292 ~~l~l~DtaG~e~~-------------~~~~~~~i~~-ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piil 357 (452)
..|.|+||+|.... ..+...|+++ .+++++|+|+.....-++...+...+.. ...++++
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~-------~~~rti~ 197 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP-------QGERTIG 197 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH-------cCCcEEE
Confidence 56889999997421 1233457774 5699999999765554443333333333 3589999
Q ss_pred EEECCCCCC
Q psy14768 358 LASKCDLPD 366 (452)
Q Consensus 358 V~NK~Dl~~ 366 (452)
|+||.|..+
T Consensus 198 ViTK~D~~~ 206 (240)
T smart00053 198 VITKLDLMD 206 (240)
T ss_pred EEECCCCCC
Confidence 999999875
No 336
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=9.4e-07 Score=95.89 Aligned_cols=115 Identities=15% Similarity=0.241 Sum_probs=87.8
Q ss_pred cccEEEeeecccCCcceeeeccccc-ccc-----------------ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNK-FLD-----------------NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~-~~~-----------------~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG 301 (452)
.-+|.|++.-.+|||||..+++-.. .+. +..-+++.......+.+ .+ .+.++|+||||
T Consensus 10 ~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~---~~-~~~iNlIDTPG 85 (697)
T COG0480 10 IRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW---KG-DYRINLIDTPG 85 (697)
T ss_pred ceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE---cC-ceEEEEeCCCC
Confidence 3578999999999999999887311 110 01123343333334433 22 48899999999
Q ss_pred cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366 (452)
Q Consensus 302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~ 366 (452)
+-.|..-..+.++-+|++++|+|+.++...|.-..|....+.. +|.++++||.|...
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~--------vp~i~fiNKmDR~~ 142 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYG--------VPRILFVNKMDRLG 142 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcC--------CCeEEEEECccccc
Confidence 9999988899999999999999999998888888888877766 99999999999864
No 337
>KOG0468|consensus
Probab=98.39 E-value=9.4e-07 Score=92.27 Aligned_cols=121 Identities=18% Similarity=0.252 Sum_probs=89.2
Q ss_pred CCCcccEEEeeecccCCcceeeeccccccccccC-----------------CcceeeeEEEEEEeeecCCeeEEEEEEec
Q psy14768 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYK-----------------NTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299 (452)
Q Consensus 237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~-----------------~t~~~d~~~~~i~~~~~~~~~~~l~l~Dt 299 (452)
......++++|.-..|||+|+..|..+....-.. .+......-.++......++.+.++++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 3345689999999999999998887543221110 01111112222222234678889999999
Q ss_pred CCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365 (452)
Q Consensus 300 aG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~ 365 (452)
+|+-.|..-....++.+|++++|+|+-++.+++.-+.....+... .|+++|+||.|..
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~--------~~i~vviNKiDRL 262 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNR--------LPIVVVINKVDRL 262 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhcc--------CcEEEEEehhHHH
Confidence 999999888888999999999999999999888877766666665 9999999999963
No 338
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.33 E-value=2.6e-07 Score=82.17 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=34.2
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
++|++||.||||||||||++++.+.....-|+.+++.....+..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~ 44 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKL 44 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEe
Confidence 47999999999999999999999876555566666665544443
No 339
>PRK12288 GTPase RsgA; Reviewed
Probab=98.32 E-value=2.7e-06 Score=85.76 Aligned_cols=88 Identities=19% Similarity=0.186 Sum_probs=67.3
Q ss_pred hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCc--ccHHHHHHHHHHcCCCEEEEe
Q psy14768 312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQ--VEINEIEAVCHQYNFMSWIEV 389 (452)
Q Consensus 312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~e~~~~~~~~~~~~~~~ev 389 (452)
...++|.+++|++++...++..+..|+..+.. .++|++||+||+||.+.. .......+....+++. ++++
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~-------~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~-v~~v 188 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET-------LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYR-VLMV 188 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh-------cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCe-EEEE
Confidence 35789999999999988999999999876553 358999999999997521 1112223334456664 8999
Q ss_pred cCCCCccHHHHHHHHHHH
Q psy14768 390 SSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~~ 407 (452)
||+++.|++++++.+...
T Consensus 189 SA~tg~GideL~~~L~~k 206 (347)
T PRK12288 189 SSHTGEGLEELEAALTGR 206 (347)
T ss_pred eCCCCcCHHHHHHHHhhC
Confidence 999999999999988653
No 340
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.32 E-value=2.3e-06 Score=90.80 Aligned_cols=119 Identities=12% Similarity=0.094 Sum_probs=70.9
Q ss_pred cccEEEeeecccCCcceeeeccccc-ccccc-CCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh-------hhh-
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNK-FLDNY-KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI-------CMS- 309 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~-~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~-------~~~- 309 (452)
.++|+++|.+|+||||++|.++++. +.... .+.++. ........ + ...+.++||||..... .+.
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~i---d--G~~L~VIDTPGL~dt~~dq~~neeILk 191 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLV---Q--GVKIRVIDTPGLKSSASDQSKNEKILS 191 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEE---C--CceEEEEECCCCCccccchHHHHHHHH
Confidence 4789999999999999999999865 43332 233332 22222222 3 3568899999965321 111
Q ss_pred --hhhhc--CCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768 310 --RVYYQ--NSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366 (452)
Q Consensus 310 --~~~i~--~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~ 366 (452)
..++. ..|++|+|..++.......-..++..+...++.. --.-+|||.++||...
T Consensus 192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~--Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS--IWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH--hHcCEEEEEeCCccCC
Confidence 12444 4899999988764433211123444444333211 1133899999999874
No 341
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.32 E-value=5.2e-07 Score=83.86 Aligned_cols=41 Identities=27% Similarity=0.463 Sum_probs=35.7
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~ 149 (452)
+||+|||++|||||||++||+++.|...+.||++.++....
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~ 41 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPA 41 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeE
Confidence 48999999999999999999999999889999887764433
No 342
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.32 E-value=4.8e-07 Score=84.08 Aligned_cols=44 Identities=50% Similarity=0.838 Sum_probs=39.2
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
+||++||++|||||||++||++..|...+.+|+|.++..+.+..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~ 44 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEW 44 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEE
Confidence 58999999999999999999999999889999999887665543
No 343
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=2.3e-06 Score=81.81 Aligned_cols=142 Identities=15% Similarity=0.168 Sum_probs=95.4
Q ss_pred CcccEEEeeecccCCcceeeeccc---c-------------ccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQ---N-------------KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~---~-------------~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~ 302 (452)
..++|..+|.-+-|||||.-++.. . ....+..-+++++....+... ..-.+..+|++|+
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-----~~rhyahVDcPGH 85 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-----ANRHYAHVDCPGH 85 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-----CCceEEeccCCCh
Confidence 457889999999999999766542 1 111222334555444444433 3445667799999
Q ss_pred chhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCC----CcccHHHHHHH
Q psy14768 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPD----RQVEINEIEAV 377 (452)
Q Consensus 303 e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~----~~~~~e~~~~~ 377 (452)
..|-..+.....+.|+.|||+.++++.-=|..+..+.. + .-.+| +++++||+|+.+ -+.-..+++++
T Consensus 86 aDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLla--r------qvGvp~ivvflnK~Dmvdd~ellelVemEvreL 157 (394)
T COG0050 86 ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLA--R------QVGVPYIVVFLNKVDMVDDEELLELVEMEVREL 157 (394)
T ss_pred HHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhh--h------hcCCcEEEEEEecccccCcHHHHHHHHHHHHHH
Confidence 99988877777899999999999997544443332221 1 12465 677889999986 23445577888
Q ss_pred HHHcCCC----EEEEecCCC
Q psy14768 378 CHQYNFM----SWIEVSSKE 393 (452)
Q Consensus 378 ~~~~~~~----~~~evSAkt 393 (452)
+..+++. +++.-||+.
T Consensus 158 Ls~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 158 LSEYGFPGDDTPIIRGSALK 177 (394)
T ss_pred HHHcCCCCCCcceeechhhh
Confidence 8888874 466667665
No 344
>KOG0097|consensus
Probab=98.31 E-value=7e-07 Score=76.06 Aligned_cols=55 Identities=29% Similarity=0.637 Sum_probs=49.0
Q ss_pred CCCCCcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeeccc
Q psy14768 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 154 (452)
Q Consensus 100 ~~~~~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (452)
..|.++.++||.+||||.|||||||+++|..++|+.+...|||++|..+.+...+
T Consensus 3 ~~pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsg 57 (215)
T KOG0097|consen 3 AAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSG 57 (215)
T ss_pred CCccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecC
Confidence 3567788999999999999999999999999999999999999999988766543
No 345
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.31 E-value=7.2e-07 Score=90.81 Aligned_cols=77 Identities=19% Similarity=0.166 Sum_probs=66.3
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCCCCCCc-----------------
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQTPS----------------- 170 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 170 (452)
+|++|||+||||||||+|.++++.-+ +..+++-++|.-...+.-.++..++.++++.-..++
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~A 297 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEA 297 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhC
Confidence 79999999999999999999998888 889999999999999999999999888888753333
Q ss_pred eeEEEEcCCCCCchh
Q psy14768 171 YLILITGDSTVGKTS 185 (452)
Q Consensus 171 ~~Il~vgD~~vGkTs 185 (452)
..|++|.|+..+.+.
T Consensus 298 DlvL~v~D~~~~~~~ 312 (454)
T COG0486 298 DLVLFVLDASQPLDK 312 (454)
T ss_pred CEEEEEEeCCCCCch
Confidence 279999998876444
No 346
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.31 E-value=7.3e-07 Score=84.71 Aligned_cols=108 Identities=11% Similarity=0.121 Sum_probs=69.0
Q ss_pred eeEEEEEEecCC--cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCC
Q psy14768 290 RPVKLQIWDIAG--QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDR 367 (452)
Q Consensus 290 ~~~~l~l~DtaG--~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~ 367 (452)
-.+.++|+.|.| |.+. ....-+|.+++|.-..-+...|.++.-+.++. =|+|+||.|....
T Consensus 120 aG~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia------------Di~vVNKaD~~gA 182 (266)
T PF03308_consen 120 AGFDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIMEIA------------DIFVVNKADRPGA 182 (266)
T ss_dssp TT-SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------------SEEEEE--SHHHH
T ss_pred cCCCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhhhhc------------cEEEEeCCChHHH
Confidence 346777888865 5432 23467899999999888887777766444433 3789999996542
Q ss_pred cccHHHHHHHHHHcC------CCEEEEecCCCCccHHHHHHHHHHHHHHhhhh
Q psy14768 368 QVEINEIEAVCHQYN------FMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414 (452)
Q Consensus 368 ~~~~e~~~~~~~~~~------~~~~~evSAktg~nv~~lf~~i~~~i~~~~~~ 414 (452)
.....+++....... .++.+.|||.++.+|+++++.|.+........
T Consensus 183 ~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~s 235 (266)
T PF03308_consen 183 DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKES 235 (266)
T ss_dssp HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 222333333333221 25689999999999999999998866655544
No 347
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.30 E-value=1.7e-06 Score=77.12 Aligned_cols=89 Identities=15% Similarity=0.167 Sum_probs=57.3
Q ss_pred hhhcCCCEEEEEEeCCChhhH--HHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEE
Q psy14768 311 VYYQNSDGCIIMFDLTNRKSF--ESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIE 388 (452)
Q Consensus 311 ~~i~~ad~vIlV~D~t~~~S~--~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~e 388 (452)
..++++|++++|+|+.++... ..+..++. .. ..++|+++|+||+|+.+..........+.+.+.+. .+.
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~-----~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~-~~~ 74 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KE-----KPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTI-AFH 74 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHH---hc-----cCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEE-EEE
Confidence 357899999999999987432 22222222 11 23489999999999975221112222222222222 477
Q ss_pred ecCCCCccHHHHHHHHHHHH
Q psy14768 389 VSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 389 vSAktg~nv~~lf~~i~~~i 408 (452)
+||+.+.|++++++.+....
T Consensus 75 iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 75 ASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred eeccccccHHHHHHHHHHHH
Confidence 99999999999999987654
No 348
>KOG0091|consensus
Probab=98.30 E-value=4.7e-07 Score=79.16 Aligned_cols=42 Identities=45% Similarity=0.697 Sum_probs=37.8
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~ 147 (452)
.+.+++++|||+.||||||+++|.+.+|+.-..||||+||..
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffa 47 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFA 47 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHH
Confidence 467899999999999999999999999998888999888864
No 349
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=6.1e-06 Score=82.13 Aligned_cols=88 Identities=16% Similarity=0.121 Sum_probs=56.6
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeee---------c----CCeeEEEEEEecCCcchh-
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------Y----GGRPVKLQIWDIAGQDRY- 305 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~---------~----~~~~~~l~l~DtaG~e~~- 305 (452)
.+++.|+|.||||||||.|.+..........|..+.+...-...++. + .-....+.|+|.||.-.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 36899999999999999999998655444445444433222222110 0 112356889999985321
Q ss_pred ---hhhhhh---hhcCCCEEEEEEeCCC
Q psy14768 306 ---ICMSRV---YYQNSDGCIIMFDLTN 327 (452)
Q Consensus 306 ---~~~~~~---~i~~ad~vIlV~D~t~ 327 (452)
.-+-.. -++++|+++.|+|+.+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 122233 3789999999999874
No 350
>KOG1486|consensus
Probab=98.28 E-value=5.2e-06 Score=77.75 Aligned_cols=163 Identities=15% Similarity=0.191 Sum_probs=102.4
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh-------hhhhh
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI-------CMSRV 311 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~-------~~~~~ 311 (452)
...+|+++|.|.||||||+..+..-.........++.....-.+.+ ++. .+++.|.||.-.-. .....
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y---~ga--~IQllDLPGIieGAsqgkGRGRQvia 135 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHY---NGA--NIQLLDLPGIIEGASQGKGRGRQVIA 135 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEe---cCc--eEEEecCcccccccccCCCCCceEEE
Confidence 4578999999999999999887753322222233333343444444 454 46678999954321 11223
Q ss_pred hhcCCCEEEEEEeCCChhhHH-HHHHHHHHHHhhh---------------------------------------------
Q psy14768 312 YYQNSDGCIIMFDLTNRKSFE-SVVQWKHDLDSKC--------------------------------------------- 345 (452)
Q Consensus 312 ~i~~ad~vIlV~D~t~~~S~~-~~~~~~~~i~~~~--------------------------------------------- 345 (452)
..+-||.+++|.|++..+.-. -++.-++.+....
T Consensus 136 vArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Na 215 (364)
T KOG1486|consen 136 VARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNA 215 (364)
T ss_pred EeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccc
Confidence 467799999999998743211 1111111111100
Q ss_pred ----------------hhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768 346 ----------------ILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 346 ----------------~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i~ 409 (452)
......-++++.|-||+|. ++.+++..++++.+ -+.+|+.-+.|++.+++.+-..+.
T Consensus 216 evl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~----vs~eevdrlAr~Pn---svViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 216 EVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ----VSIEEVDRLARQPN---SVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred eEEEecCCChHHHHHHHhccceEEEEEEEeeccce----ecHHHHHHHhcCCC---cEEEEeccccCHHHHHHHHHHHhc
Confidence 0012234778888999984 56888888888766 467888889999999998887766
Q ss_pred Hhhh
Q psy14768 410 CSKR 413 (452)
Q Consensus 410 ~~~~ 413 (452)
-.+.
T Consensus 289 L~rv 292 (364)
T KOG1486|consen 289 LVRV 292 (364)
T ss_pred eEEE
Confidence 5443
No 351
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.27 E-value=9e-07 Score=78.74 Aligned_cols=43 Identities=30% Similarity=0.747 Sum_probs=38.8
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
+||+++|++|||||||++||++++|...+.+|+|.++..+.+.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~ 43 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVS 43 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEE
Confidence 4899999999999999999999999999999999998766544
No 352
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.27 E-value=1.2e-06 Score=78.68 Aligned_cols=45 Identities=33% Similarity=0.690 Sum_probs=40.0
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
+.+||++||++|||||||++||.+..|...+.+|+|.++....+.
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~ 46 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIE 46 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEE
Confidence 458999999999999999999999999999999999888665543
No 353
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.25 E-value=7.2e-07 Score=83.17 Aligned_cols=43 Identities=37% Similarity=0.526 Sum_probs=38.8
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
+||++||+++||||||++||+++.|...+.+|+|.++..+.+.
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~ 43 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHT 43 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEE
Confidence 4899999999999999999999999989999999888766654
No 354
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.25 E-value=1.3e-06 Score=79.26 Aligned_cols=46 Identities=41% Similarity=0.728 Sum_probs=40.6
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
.+.+||++||++|||||||+++|.+..|...+.+|+|.++....+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~ 47 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVV 47 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEE
Confidence 3568999999999999999999999999999999999888765543
No 355
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.25 E-value=2.9e-07 Score=89.69 Aligned_cols=55 Identities=18% Similarity=0.211 Sum_probs=39.7
Q ss_pred CcEEEEEECCCCCC-CcccHHHHHHHH-HHcCCCEEEEecCCCCccHHHHHHHHHHH
Q psy14768 353 LPCLLLASKCDLPD-RQVEINEIEAVC-HQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 353 ~piilV~NK~Dl~~-~~~~~e~~~~~~-~~~~~~~~~evSAktg~nv~~lf~~i~~~ 407 (452)
.+-++|+||+|+.. .....+...+.. ......+++.+||++|.|++++++|+...
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 56799999999975 122233333333 33445668999999999999999999763
No 356
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.23 E-value=4.5e-06 Score=74.29 Aligned_cols=84 Identities=15% Similarity=0.032 Sum_probs=55.6
Q ss_pred CEEEEEEeCCChhhHHHHHHHHH-HHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768 317 DGCIIMFDLTNRKSFESVVQWKH-DLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHL 395 (452)
Q Consensus 317 d~vIlV~D~t~~~S~~~~~~~~~-~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~ 395 (452)
|++|+|+|+.++.+..+. ++. ... ...++|+++|+||+|+.......+....+... ....++.+||+++.
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~------~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~-~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLI------KEKGKKLILVLNKADLVPKEVLRKWLAYLRHS-YPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHH------hcCCCCEEEEEechhcCCHHHHHHHHHHHHhh-CCceEEEEeccCCc
Confidence 789999999988665532 222 111 12458999999999996421111112223223 23447999999999
Q ss_pred cHHHHHHHHHHHHH
Q psy14768 396 MIEDSMNFLVDRII 409 (452)
Q Consensus 396 nv~~lf~~i~~~i~ 409 (452)
+++++++.+.+...
T Consensus 72 gi~~L~~~i~~~~~ 85 (155)
T cd01849 72 GIEKKESAFTKQTN 85 (155)
T ss_pred ChhhHHHHHHHHhH
Confidence 99999999987754
No 357
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.22 E-value=4.6e-06 Score=75.76 Aligned_cols=54 Identities=15% Similarity=0.146 Sum_probs=41.3
Q ss_pred EEEEEECCCCCC-CcccHHHHHHHHHHc-CCCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768 355 CLLLASKCDLPD-RQVEINEIEAVCHQY-NFMSWIEVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 355 iilV~NK~Dl~~-~~~~~e~~~~~~~~~-~~~~~~evSAktg~nv~~lf~~i~~~i 408 (452)
=++|+||.||.. ...+.+...+-+++. +-.+|+++|+++|+|+++++.++....
T Consensus 145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 379999999987 444555555555554 445699999999999999999987654
No 358
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.22 E-value=1.4e-06 Score=79.17 Aligned_cols=38 Identities=37% Similarity=0.625 Sum_probs=35.6
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
+||++||++|||||||++||+++.|...|.||++.++.
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~ 39 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA 39 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE
Confidence 69999999999999999999999998899999987775
No 359
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.22 E-value=1.7e-06 Score=77.18 Aligned_cols=45 Identities=40% Similarity=0.712 Sum_probs=40.0
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
+.+||++||++|||||||+++|.++.|...+.+++|.++..+.+.
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~ 46 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQ 46 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEE
Confidence 358999999999999999999999999988999999888766654
No 360
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.22 E-value=6.1e-07 Score=78.16 Aligned_cols=74 Identities=20% Similarity=0.313 Sum_probs=46.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeeccccCCCC---CCCCCCCCCCceeEEEEcCCCCCchh
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP---YGTFSPIQTPSYLILITGDSTVGKTS 185 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Il~vgD~~vGkTs 185 (452)
||++||++|||||||+|||++..+. +.+|++.++..+.++..+..... .............+++|.|...+.+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~~~~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~ 78 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEYNDGAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESR 78 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEEcCeeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcC
Confidence 8999999999999999999998774 67788777765444333211000 00000011244567777777666554
No 361
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.21 E-value=1.9e-06 Score=79.96 Aligned_cols=46 Identities=41% Similarity=0.768 Sum_probs=40.5
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
++.+||++||++|||||||+++|.+..|...+.+|+|.++....+.
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~ 49 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVE 49 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEE
Confidence 4568999999999999999999999999988999999888765544
No 362
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.21 E-value=2e-06 Score=81.22 Aligned_cols=45 Identities=27% Similarity=0.570 Sum_probs=40.1
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 150 (452)
...+||++||++|||||||++||+.+.|...+.+|+|.++....+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~ 55 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF 55 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEE
Confidence 345899999999999999999999999999999999998876554
No 363
>PLN03110 Rab GTPase; Provisional
Probab=98.18 E-value=2.7e-06 Score=80.10 Aligned_cols=47 Identities=40% Similarity=0.696 Sum_probs=41.6
Q ss_pred cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
..+.+||++||++|||||||++||.+..|..++.+|+|.++..+.+.
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~ 55 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQ 55 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEE
Confidence 45678999999999999999999999999888999999998766654
No 364
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.17 E-value=2e-06 Score=76.98 Aligned_cols=42 Identities=40% Similarity=0.813 Sum_probs=37.8
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 150 (452)
+||+++|++|||||||++||.+++|...+.+|+|.++....+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~ 43 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 43 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEE
Confidence 799999999999999999999999998899999888765554
No 365
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.17 E-value=1.8e-06 Score=81.27 Aligned_cols=43 Identities=44% Similarity=0.780 Sum_probs=38.6
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
+||+|||++|||||||++||++..|...|.+|+|.++..+.+.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~ 43 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVT 43 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEE
Confidence 4899999999999999999999999999999999988665543
No 366
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.17 E-value=2.5e-06 Score=76.42 Aligned_cols=43 Identities=35% Similarity=0.807 Sum_probs=38.5
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 150 (452)
.+||++||++|||||||++||.+++|...+.+|+|.++..+.+
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~ 44 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII 44 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEE
Confidence 4899999999999999999999999998889999988876544
No 367
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.16 E-value=7.4e-06 Score=80.23 Aligned_cols=115 Identities=17% Similarity=0.306 Sum_probs=68.1
Q ss_pred cccEEEeeecccCCcceeeecccccccccc----------CCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch-----
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNY----------KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR----- 304 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~----------~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~----- 304 (452)
.++|.++|.+|+|||||+|.|++....... ..+.........+.- ++..+.+.++||+|.-.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e---~~~~l~LtiiDTpGfGd~i~n~ 80 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEE---NGVKLNLTIIDTPGFGDNIDNS 80 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEE---TCEEEEEEEEEEC-CSSSSTHC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEecc---CCcceEEEEEeCCCccccccch
Confidence 478999999999999999999985544332 122333333333333 67788999999998211
Q ss_pred -------------hhhhhh--h-----h--hcCCCEEEEEEeCCC-hhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEEC
Q psy14768 305 -------------YICMSR--V-----Y--YQNSDGCIIMFDLTN-RKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361 (452)
Q Consensus 305 -------------~~~~~~--~-----~--i~~ad~vIlV~D~t~-~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK 361 (452)
|..... . . =.+.|++|++++.+. +.+-.|++ .+..+... +.+|-|+.|
T Consensus 81 ~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~-~mk~Ls~~--------vNvIPvIaK 151 (281)
T PF00735_consen 81 DCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIE-FMKRLSKR--------VNVIPVIAK 151 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHH-HHHHHTTT--------SEEEEEEST
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHH-HHHHhccc--------ccEEeEEec
Confidence 111000 0 0 124689999999874 33334442 45555554 789999999
Q ss_pred CCCCC
Q psy14768 362 CDLPD 366 (452)
Q Consensus 362 ~Dl~~ 366 (452)
.|...
T Consensus 152 aD~lt 156 (281)
T PF00735_consen 152 ADTLT 156 (281)
T ss_dssp GGGS-
T ss_pred ccccC
Confidence 99864
No 368
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.15 E-value=3e-06 Score=75.78 Aligned_cols=44 Identities=36% Similarity=0.769 Sum_probs=38.9
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
.+||+++|++|||||||++||+++.|...+.+|+|.++..+.+.
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~ 45 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE 45 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEE
Confidence 48999999999999999999999999888899998887765543
No 369
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.15 E-value=2.4e-06 Score=77.23 Aligned_cols=41 Identities=44% Similarity=0.811 Sum_probs=37.2
Q ss_pred EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 150 (452)
||++||++|||||||++||+++.|..+|.+|++.++..+.+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~ 42 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERF 42 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEE
Confidence 79999999999999999999999999999999988865443
No 370
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.13 E-value=3.4e-06 Score=75.84 Aligned_cols=47 Identities=28% Similarity=0.590 Sum_probs=40.2
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
...+||++||++|||||||+++|+..++...+.+++|.++....+..
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~ 48 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI 48 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE
Confidence 34589999999999999999999999998888889988887655443
No 371
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.13 E-value=3.2e-06 Score=77.94 Aligned_cols=83 Identities=31% Similarity=0.508 Sum_probs=60.1
Q ss_pred ceeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec-----cccCCCCCCCcccEE
Q psy14768 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI-----YCTLSPIQIPTYPIL 244 (452)
Q Consensus 170 ~~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~-----~~~l~~~~~~~~kI~ 244 (452)
.++|++|||.+||||+|+.+|..+.|.+.+.++++..+...+ .+++..+.+.+||+ +..+.+..+....++
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~----~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ 78 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQT----AVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVF 78 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEE----EECCEEEEEEEEECCCchhhhhhhhhhccCCCEE
Confidence 479999999999999999999999999999999987664433 35688899999999 333434444445555
Q ss_pred EeeecccCCcce
Q psy14768 245 ITGDSTVGKTSY 256 (452)
Q Consensus 245 ivG~~nvGKSSL 256 (452)
++=-.-.-+.||
T Consensus 79 ilvydit~~~Sf 90 (191)
T cd01875 79 IICFSIASPSSY 90 (191)
T ss_pred EEEEECCCHHHH
Confidence 544333334443
No 372
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.13 E-value=3.5e-06 Score=75.62 Aligned_cols=45 Identities=40% Similarity=0.696 Sum_probs=39.3
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
..+||+++|++|||||||++||+++.|...+.+++|.++..+.+.
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLE 48 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEE
Confidence 468999999999999999999999999988889999887655443
No 373
>KOG4252|consensus
Probab=98.12 E-value=1.5e-06 Score=77.12 Aligned_cols=53 Identities=32% Similarity=0.665 Sum_probs=46.1
Q ss_pred CCCCCCcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 99 ~~~~~~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
...+.+.+..+|++|||..+||||+|+.|||.+-|...|.-|||+||.++.+.
T Consensus 11 am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~ 63 (246)
T KOG4252|consen 11 AMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIK 63 (246)
T ss_pred CCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHH
Confidence 34455666679999999999999999999999999999999999999876643
No 374
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.12 E-value=5.8e-06 Score=72.43 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=52.3
Q ss_pred hhhhcCCCEEEEEEeCCChhhHHH--HHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEE
Q psy14768 310 RVYYQNSDGCIIMFDLTNRKSFES--VVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWI 387 (452)
Q Consensus 310 ~~~i~~ad~vIlV~D~t~~~S~~~--~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~ 387 (452)
...++++|++++|+|+.++.+.++ +..|+... ..++|+++|+||+|+.+.. ......++.+..+. .++
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~--------~~~k~~iivlNK~DL~~~~-~~~~~~~~~~~~~~-~ii 75 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV--------DPRKKNILLLNKADLLTEE-QRKAWAEYFKKEGI-VVV 75 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc--------cCCCcEEEEEechhcCCHH-HHHHHHHHHHhcCC-eEE
Confidence 356789999999999999876553 33333322 1358999999999996521 12233444555554 489
Q ss_pred EecCCCCcc
Q psy14768 388 EVSSKEHLM 396 (452)
Q Consensus 388 evSAktg~n 396 (452)
++||+++.+
T Consensus 76 ~iSa~~~~~ 84 (141)
T cd01857 76 FFSALKENA 84 (141)
T ss_pred EEEecCCCc
Confidence 999998764
No 375
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.12 E-value=3.7e-06 Score=75.13 Aligned_cols=46 Identities=48% Similarity=0.712 Sum_probs=40.1
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
+.+||++||++|||||||++||....|...+.++++.++..+.+..
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~ 47 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEI 47 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEE
Confidence 4689999999999999999999999999888899988887665543
No 376
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.12 E-value=3.1e-06 Score=79.44 Aligned_cols=44 Identities=43% Similarity=0.782 Sum_probs=39.4
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
.+||++||++|||||||+++|+++.|...+.+|+|.++..+.+.
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~ 45 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIE 45 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEE
Confidence 48999999999999999999999999988889999888766554
No 377
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.11 E-value=2.8e-06 Score=76.94 Aligned_cols=38 Identities=26% Similarity=0.488 Sum_probs=35.0
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
+||++||++|||||||++||+++.|...+.+|++..+.
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~ 40 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK 40 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE
Confidence 79999999999999999999999999889999986664
No 378
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.11 E-value=3.2e-06 Score=76.02 Aligned_cols=42 Identities=29% Similarity=0.600 Sum_probs=37.3
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 150 (452)
+||+++|++|||||||++||+.+.|...+.+|++.++....+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~ 42 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDF 42 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEE
Confidence 489999999999999999999999988899999888765544
No 379
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.10 E-value=2.5e-06 Score=76.12 Aligned_cols=39 Identities=28% Similarity=0.527 Sum_probs=33.5
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~ 147 (452)
+||++||++|||||||++||+++.|...+.++++.++..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~ 39 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYK 39 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEE
Confidence 489999999999999999999999987777777665543
No 380
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.09 E-value=3.5e-06 Score=77.14 Aligned_cols=56 Identities=34% Similarity=0.692 Sum_probs=49.4
Q ss_pred eeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec
Q psy14768 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229 (452)
Q Consensus 171 ~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~ 229 (452)
++|+++||.+||||+|+.+|..+.|..++.++++.++..+.+ .+++..+.+.+||+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i---~~~~~~~~l~iwDt 56 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTI---SIRGTEITFSIWDL 56 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEE---EECCEEEEEEEEeC
Confidence 479999999999999999999999999999999988876555 34577889999998
No 381
>PRK15494 era GTPase Era; Provisional
Probab=98.09 E-value=7.8e-06 Score=82.36 Aligned_cols=28 Identities=18% Similarity=0.457 Sum_probs=25.9
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFL 134 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~ 134 (452)
+.++|++||++|||||||+|+|++.+++
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ 78 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLS 78 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCcee
Confidence 4579999999999999999999999886
No 382
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.09 E-value=3.5e-06 Score=75.31 Aligned_cols=42 Identities=43% Similarity=0.725 Sum_probs=37.3
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 150 (452)
+||++||++|||||||++||.++.|...+.+|+|.++..+.+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~ 42 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI 42 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEE
Confidence 489999999999999999999999998899999988765443
No 383
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.09 E-value=5.6e-06 Score=75.47 Aligned_cols=84 Identities=30% Similarity=0.508 Sum_probs=63.4
Q ss_pred eeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec-----cccCCCCCCCcccEEE
Q psy14768 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI-----YCTLSPIQIPTYPILI 245 (452)
Q Consensus 171 ~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~-----~~~l~~~~~~~~kI~i 245 (452)
++|+++||.+||||+|+.+|+.+.|..++.++++..+...+ .+++..+.+.+||+ +..+....+.....++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~----~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~i 77 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV----SVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 77 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEE----EECCEEEEEEEEECCCCccccccchhhcCCCcEEE
Confidence 58999999999999999999999999999999987765433 34678899999999 3334444455556666
Q ss_pred eeecccCCcceee
Q psy14768 246 TGDSTVGKTSYVQ 258 (452)
Q Consensus 246 vG~~nvGKSSLin 258 (452)
+=-.-..+.||-+
T Consensus 78 lvyd~~~~~Sf~~ 90 (176)
T cd04133 78 LAFSLISRASYEN 90 (176)
T ss_pred EEEEcCCHHHHHH
Confidence 6555555666644
No 384
>PLN03108 Rab family protein; Provisional
Probab=98.08 E-value=4.9e-06 Score=77.98 Aligned_cols=46 Identities=28% Similarity=0.618 Sum_probs=40.0
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
++.+||+|||++|||||||+++|++..|...+.+|++.++....+.
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~ 49 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIT 49 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEE
Confidence 3568999999999999999999999999988889999888765443
No 385
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.08 E-value=3.4e-06 Score=74.81 Aligned_cols=42 Identities=45% Similarity=0.869 Sum_probs=37.3
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 150 (452)
+||++||++|||||||+++|+++.|...+.+|++.++....+
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~ 42 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQI 42 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEE
Confidence 489999999999999999999999998899999888865443
No 386
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.08 E-value=3.6e-06 Score=74.30 Aligned_cols=37 Identities=32% Similarity=0.670 Sum_probs=33.4
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
+||+++|++|||||||++||+++.|...+.+|++..+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~ 38 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY 38 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE
Confidence 6899999999999999999999999888888886554
No 387
>COG1159 Era GTPase [General function prediction only]
Probab=98.08 E-value=2.6e-06 Score=82.16 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=24.1
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFL 134 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~ 134 (452)
--|+|||+||||||||+|++++.+.+
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~Kis 32 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKIS 32 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceE
Confidence 45999999999999999999998887
No 388
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.07 E-value=3.8e-06 Score=75.44 Aligned_cols=35 Identities=31% Similarity=0.465 Sum_probs=32.4
Q ss_pred EEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 111 ILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 111 v~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
|++||++|||||||++||+++.|...+.+|+|.++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~ 36 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS 36 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce
Confidence 79999999999999999999999888999998765
No 389
>PTZ00369 Ras-like protein; Provisional
Probab=98.05 E-value=4.6e-06 Score=76.64 Aligned_cols=38 Identities=34% Similarity=0.706 Sum_probs=35.0
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
+||++||++|||||||++||++..|...+.+|++.++.
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~ 43 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR 43 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEE
Confidence 89999999999999999999999998889999887664
No 390
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.05 E-value=4.9e-06 Score=73.89 Aligned_cols=42 Identities=45% Similarity=0.740 Sum_probs=38.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
||++||+++||||||+++|.++.|...+.+|+|.++..+.+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~ 42 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVS 42 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccc
Confidence 899999999999999999999999999999999888776654
No 391
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.04 E-value=4.7e-06 Score=76.37 Aligned_cols=43 Identities=40% Similarity=0.745 Sum_probs=37.9
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
+||+++|++|||||||++||.+..|...+.+|+|.++..+.+.
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~ 43 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVY 43 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEE
Confidence 4899999999999999999999999888999999887665543
No 392
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.04 E-value=0.00016 Score=71.72 Aligned_cols=161 Identities=15% Similarity=0.166 Sum_probs=98.8
Q ss_pred CCCcccEEEeeecccCCcceeeeccccccccccCC--------------cceeeeEEEEEEee--------e--------
Q psy14768 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKN--------------TVGVDFSTKLLSHK--------K-------- 286 (452)
Q Consensus 237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~--------------t~~~d~~~~~i~~~--------~-------- 286 (452)
....+.+...|.-+.|||||+-.|...+.....-. +..-+.....+-+. .
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 34568899999999999999999885443322111 11111111111110 0
Q ss_pred --cCCeeEEEEEEecCCcchhhh--hhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECC
Q psy14768 287 --YGGRPVKLQIWDIAGQDRYIC--MSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362 (452)
Q Consensus 287 --~~~~~~~l~l~DtaG~e~~~~--~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~ 362 (452)
.+.....+.|+||.|+|.|-. ++-.+=.+.|-.+|++.++++.+--.-+.+.-.+. -..|+|+|++|+
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a--------~~lPviVvvTK~ 265 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALA--------MELPVIVVVTKI 265 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhh--------hcCCEEEEEEec
Confidence 011113467889999998864 33445567899999999999876544333333333 248999999999
Q ss_pred CCCC---CcccHHHHHHHHHHc------------------------CCCEEEEecCCCCccHHHHHHHHH
Q psy14768 363 DLPD---RQVEINEIEAVCHQY------------------------NFMSWIEVSSKEHLMIEDSMNFLV 405 (452)
Q Consensus 363 Dl~~---~~~~~e~~~~~~~~~------------------------~~~~~~evSAktg~nv~~lf~~i~ 405 (452)
|+.. .+...+++..+.+.. +..|+|++|+.+|++++-+.+.+.
T Consensus 266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 266 DMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 9976 222233333333221 245689999999999876655444
No 393
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.04 E-value=4.9e-06 Score=76.01 Aligned_cols=39 Identities=38% Similarity=0.552 Sum_probs=35.4
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~ 147 (452)
+||+++|++|||||||+++|+++.|...+.+|++.++..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~ 39 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT 39 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE
Confidence 489999999999999999999999998899999877654
No 394
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.04 E-value=5e-06 Score=74.12 Aligned_cols=38 Identities=32% Similarity=0.633 Sum_probs=34.0
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
+||+++|++|||||||++||+.+.|...+.+|++..+.
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~ 39 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR 39 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE
Confidence 68999999999999999999999998888899876653
No 395
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.04 E-value=5.1e-06 Score=76.38 Aligned_cols=42 Identities=40% Similarity=0.805 Sum_probs=36.4
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCC-CCcCccccCceeeee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLD-NYKNTVGVDFSTKLL 150 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~-~~~~~~~~~~~~~~~ 150 (452)
+||++||++|||||||++||++++|.. .|.+|+|.++..+.+
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~ 43 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRM 43 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEE
Confidence 489999999999999999999999984 688999888765443
No 396
>KOG0093|consensus
Probab=98.03 E-value=6.9e-06 Score=70.75 Aligned_cols=53 Identities=32% Similarity=0.649 Sum_probs=46.7
Q ss_pred CCCCCCcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 99 ~~~~~~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
++.+.+-++.+|++|+|++.||||+++.||++..|...+..|+|++|..+.+-
T Consensus 12 ~s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvy 64 (193)
T KOG0093|consen 12 DSIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVY 64 (193)
T ss_pred ccccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEee
Confidence 34445668889999999999999999999999999999999999999987643
No 397
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.03 E-value=4.4e-06 Score=79.59 Aligned_cols=85 Identities=18% Similarity=0.289 Sum_probs=64.3
Q ss_pred CceeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeecc-----ccCCCCCCCcccE
Q psy14768 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIY-----CTLSPIQIPTYPI 243 (452)
Q Consensus 169 ~~~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~~-----~~l~~~~~~~~kI 243 (452)
..++|++|||.+||||+|+.+|+.+.|...+.++++.++... + .+++..+.+.+||+. ..+.+..+....+
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~-i---~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAG-L---ETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEE-E---EECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 347999999999999999999999999999999998877543 2 356888999999993 3333444555666
Q ss_pred EEeeecccCCccee
Q psy14768 244 LITGDSTVGKTSYV 257 (452)
Q Consensus 244 ~ivG~~nvGKSSLi 257 (452)
+++=..-+-+.||-
T Consensus 88 vIlVyDit~~~Sf~ 101 (232)
T cd04174 88 VLLCFDISRPETVD 101 (232)
T ss_pred EEEEEECCChHHHH
Confidence 66655555566653
No 398
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.03 E-value=5.6e-06 Score=74.11 Aligned_cols=43 Identities=49% Similarity=0.855 Sum_probs=37.7
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
+||+++|++|||||||++||.+..+...+.++++.++..+.+.
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~ 43 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVT 43 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEE
Confidence 4899999999999999999999999888889998887665543
No 399
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.01 E-value=9.5e-06 Score=74.24 Aligned_cols=81 Identities=11% Similarity=0.049 Sum_probs=47.3
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhcc-CC-CCCcCccccCceeeeeeccccCCCCCCCCCCCC------------------
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNK-FL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ------------------ 167 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 167 (452)
..-|+++||+|||||||+|.+++++ .+ ..-.|+.++....-++... +.+-+....+.+.
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~-~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~ 102 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE-LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLE 102 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc-EEEEeCCCcccccCCHHHHHHHHHHHHHHHh
Confidence 4579999999999999999999966 33 4444554433332222221 1111122222221
Q ss_pred --CCceeEEEEcCCCCCchhhhhh
Q psy14768 168 --TPSYLILITGDSTVGKTSYVQG 189 (452)
Q Consensus 168 --~~~~~Il~vgD~~vGkTsl~~r 189 (452)
...-.+++|.|++.+.+-++..
T Consensus 103 ~R~~L~~vvlliD~r~~~~~~D~e 126 (200)
T COG0218 103 KRANLKGVVLLIDARHPPKDLDRE 126 (200)
T ss_pred hchhheEEEEEEECCCCCcHHHHH
Confidence 1112577888888888876554
No 400
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.01 E-value=4.5e-06 Score=77.88 Aligned_cols=55 Identities=40% Similarity=0.764 Sum_probs=49.0
Q ss_pred eEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec
Q psy14768 172 LILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229 (452)
Q Consensus 172 ~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~ 229 (452)
.|++|||.+||||+|+.+|+.+.|...+.++++.+|..+.+ .+++..+.+.+||+
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i---~~~~~~v~l~iwDt 56 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTV---ELRGKKIRLQIWDT 56 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEE---EECCEEEEEEEEeC
Confidence 58999999999999999999999999999999998877665 34577899999998
No 401
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.01 E-value=5.1e-06 Score=73.80 Aligned_cols=38 Identities=29% Similarity=0.634 Sum_probs=33.7
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
+||+++|++|||||||++||++..|...+.+|++..+.
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~ 40 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYT 40 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEE
Confidence 79999999999999999999999988888888875543
No 402
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.01 E-value=7.3e-06 Score=72.69 Aligned_cols=34 Identities=35% Similarity=0.685 Sum_probs=31.9
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~ 142 (452)
+||+++|++|||||||++||+++.|...+.+|++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~ 35 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE 35 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh
Confidence 6999999999999999999999999888888886
No 403
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.00 E-value=7.4e-06 Score=73.75 Aligned_cols=45 Identities=40% Similarity=0.699 Sum_probs=39.0
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
.+||++||++|||||||++||++..|...+.++++.++..+.+..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~ 46 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEI 46 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEE
Confidence 379999999999999999999999999888999988877655443
No 404
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.00 E-value=3.7e-05 Score=71.81 Aligned_cols=77 Identities=16% Similarity=0.184 Sum_probs=49.1
Q ss_pred EEEEEEec-CCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCccc
Q psy14768 292 VKLQIWDI-AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVE 370 (452)
Q Consensus 292 ~~l~l~Dt-aG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~ 370 (452)
..+.++|| ||.|.|.. ...+.+|.+|+|+|.+- .++...+......... .-+++.+|+||+|-.
T Consensus 134 ~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~-~sl~taeri~~L~~el------g~k~i~~V~NKv~e~----- 198 (255)
T COG3640 134 YEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSY-KSLRTAERIKELAEEL------GIKRIFVVLNKVDEE----- 198 (255)
T ss_pred CcEEEEecccchhhhcc---ccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHh------CCceEEEEEeeccch-----
Confidence 45678898 78888763 45679999999999873 4444443333322222 127899999999843
Q ss_pred HHHHHHHHHHcCC
Q psy14768 371 INEIEAVCHQYNF 383 (452)
Q Consensus 371 ~e~~~~~~~~~~~ 383 (452)
.+.........+.
T Consensus 199 e~~~~~~~~~~~~ 211 (255)
T COG3640 199 EELLRELAEELGL 211 (255)
T ss_pred hHHHHhhhhccCC
Confidence 3344444444443
No 405
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=97.99 E-value=7.3e-06 Score=72.60 Aligned_cols=44 Identities=36% Similarity=0.701 Sum_probs=39.0
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
+||+++|++|||||||++++.+..+...+.++.+.++..+.+..
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~ 44 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYL 44 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEE
Confidence 38999999999999999999999998888999998887766654
No 406
>KOG2486|consensus
Probab=97.99 E-value=6.1e-06 Score=78.58 Aligned_cols=154 Identities=18% Similarity=0.202 Sum_probs=88.1
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccC-CcceeeeEEEEEEeeecCCeeEEEEEEecCCc----------chhh
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYK-NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ----------DRYI 306 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~-~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~----------e~~~ 306 (452)
.....+++.|.+|||||+|+|.++....+.... +..|. +..+..+ .-...+.++|.+|. +.+.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~---Tq~in~f---~v~~~~~~vDlPG~~~a~y~~~~~~d~~ 207 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGK---TQAINHF---HVGKSWYEVDLPGYGRAGYGFELPADWD 207 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCcc---ceeeeee---eccceEEEEecCCcccccCCccCcchHh
Confidence 345889999999999999999998744442222 23332 2222221 12235678899982 2233
Q ss_pred hhhhhhhcCC---CEEEEEEeCCChhhHHHH--HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--C---cccHHHHHH
Q psy14768 307 CMSRVYYQNS---DGCIIMFDLTNRKSFESV--VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--R---QVEINEIEA 376 (452)
Q Consensus 307 ~~~~~~i~~a---d~vIlV~D~t~~~S~~~~--~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--~---~~~~e~~~~ 376 (452)
.+...|+.+- =-+++++|++-+..--|. ..|+. ..++|+.+|.||+|... . .-....+..
T Consensus 208 ~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~g----------e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~ 277 (320)
T KOG2486|consen 208 KFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLG----------ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKI 277 (320)
T ss_pred HhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHh----------hcCCCeEEeeehhhhhhhccccccCcccccee
Confidence 4444444332 245566687765322222 22332 23599999999999753 0 001111111
Q ss_pred ----HHHHc--CCCEEEEecCCCCccHHHHHHHHHHH
Q psy14768 377 ----VCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 377 ----~~~~~--~~~~~~evSAktg~nv~~lf~~i~~~ 407 (452)
+.+.. .-.+|+.+|+.++.++++++-.+.+.
T Consensus 278 ~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 278 NFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ehhhccccceeccCCceeeecccccCceeeeeehhhh
Confidence 11111 12348899999999999887766553
No 407
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.99 E-value=1.9e-05 Score=71.47 Aligned_cols=91 Identities=12% Similarity=-0.000 Sum_probs=60.3
Q ss_pred hhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEE
Q psy14768 307 CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSW 386 (452)
Q Consensus 307 ~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~ 386 (452)
......+++||++++|+|++++....+.. +... . .++|+++|+||+|+.+... .....++.+..+ ..+
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~~-i~~~---~------~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~-~~v 78 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNPL-LEKI---L------GNKPRIIVLNKADLADPKK-TKKWLKYFESKG-EKV 78 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCChh-hHhH---h------cCCCEEEEEehhhcCChHH-HHHHHHHHHhcC-CeE
Confidence 33456789999999999998775433221 1111 1 2379999999999964211 111112222323 347
Q ss_pred EEecCCCCccHHHHHHHHHHHHH
Q psy14768 387 IEVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 387 ~evSAktg~nv~~lf~~i~~~i~ 409 (452)
+.+||+++.+++++...+...+.
T Consensus 79 i~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 79 LFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred EEEECCCcccHHHHHHHHHHHHH
Confidence 99999999999999999888764
No 408
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.98 E-value=2e-05 Score=81.05 Aligned_cols=119 Identities=14% Similarity=0.118 Sum_probs=87.4
Q ss_pred eeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh-------hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECC
Q psy14768 290 RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK-------SFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362 (452)
Q Consensus 290 ~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~-------S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~ 362 (452)
....+.++|++||+..+.-|..++.++++||+|+++++.. ....+...+..++..++.....+.|+||++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 4567899999999999999999999999999999987642 234555666666666666677899999999999
Q ss_pred CCCC-----------------Cc--ccHHHHHHHHHHc-----------CCCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768 363 DLPD-----------------RQ--VEINEIEAVCHQY-----------NFMSWIEVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 363 Dl~~-----------------~~--~~~e~~~~~~~~~-----------~~~~~~evSAktg~nv~~lf~~i~~~i 408 (452)
|+.. .. ...+.+..+.... ....+++|+|.+..++..+|..+.+.|
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 9732 01 2344444444321 112357999999999999999987754
No 409
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.98 E-value=6.8e-06 Score=74.11 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=33.8
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~ 147 (452)
.+||+++|.+|||||||++||..+.|. .+.+|+|.++..
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~ 47 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET 47 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEE
Confidence 379999999999999999999988875 578899887753
No 410
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.97 E-value=2e-05 Score=76.04 Aligned_cols=108 Identities=10% Similarity=0.067 Sum_probs=70.0
Q ss_pred eeEEEEEEecCC--cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCC
Q psy14768 290 RPVKLQIWDIAG--QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDR 367 (452)
Q Consensus 290 ~~~~l~l~DtaG--~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~ 367 (452)
-.+.++|+.|.| |.+ .....-+|.+++|.=..-+...|-++.-+.++. =|+|+||.|....
T Consensus 142 aG~DvIIVETVGvGQse-----v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia------------Di~vINKaD~~~A 204 (323)
T COG1703 142 AGYDVIIVETVGVGQSE-----VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIA------------DIIVINKADRKGA 204 (323)
T ss_pred cCCCEEEEEecCCCcch-----hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhh------------heeeEeccChhhH
Confidence 456777888875 322 223456899999887777777777766444443 3689999996541
Q ss_pred cccHHHHHH---HH----HHc-CCCEEEEecCCCCccHHHHHHHHHHHHHHhhhh
Q psy14768 368 QVEINEIEA---VC----HQY-NFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414 (452)
Q Consensus 368 ~~~~e~~~~---~~----~~~-~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~~ 414 (452)
+....+... +. ... ..++.+.|||.+|+|++++++.+.+........
T Consensus 205 ~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~s 259 (323)
T COG1703 205 EKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTES 259 (323)
T ss_pred HHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 111111111 11 111 234579999999999999999998877665544
No 411
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.96 E-value=7e-06 Score=75.74 Aligned_cols=57 Identities=33% Similarity=0.592 Sum_probs=49.8
Q ss_pred ceeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec
Q psy14768 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229 (452)
Q Consensus 170 ~~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~ 229 (452)
.++|+++||.+||||+|+.+|..+.|...+.++++.++....+ .+++..+.+.+||+
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i---~~~~~~~~l~iwDt 62 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTI---LLDGRRVKLQLWDT 62 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEE---EECCEEEEEEEEeC
Confidence 4799999999999999999999999998888888888876655 34677899999998
No 412
>PLN00023 GTP-binding protein; Provisional
Probab=97.95 E-value=1.4e-05 Score=79.12 Aligned_cols=93 Identities=19% Similarity=0.260 Sum_probs=65.7
Q ss_pred CCCCCCceeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccc----------cCCccceeeeeec----
Q psy14768 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK----------YGGRPVKLQIWDI---- 229 (452)
Q Consensus 164 ~~~~~~~~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~----------id~~~~~l~i~d~---- 229 (452)
+......+||++|||.+||||+|+.+|+.+.|...+.++++.++..+.+.+.. -++..+.++|||+
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 33455568999999999999999999999999999999999888655443221 1235678999999
Q ss_pred -cccCCCCCCCcccEEEeeecccCCcce
Q psy14768 230 -YCTLSPIQIPTYPILITGDSTVGKTSY 256 (452)
Q Consensus 230 -~~~l~~~~~~~~kI~ivG~~nvGKSSL 256 (452)
+..+.+..+.....+|+=..-+.+.++
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SF 122 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTK 122 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHH
Confidence 333334445556655555444555555
No 413
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.94 E-value=8e-06 Score=73.09 Aligned_cols=37 Identities=32% Similarity=0.612 Sum_probs=33.6
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
+||++||++|||||||++||+++.|...+.+|++..+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~ 38 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY 38 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE
Confidence 6899999999999999999999999888888887555
No 414
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.94 E-value=8.7e-06 Score=76.96 Aligned_cols=40 Identities=38% Similarity=0.643 Sum_probs=34.9
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~ 149 (452)
+||+|||++|||||||++||+.+.|. .+.+|+|.++..+.
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~-~~~~Tig~~~~~~~ 40 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAFYLKQ 40 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC-CCCCccceEEEEEE
Confidence 48999999999999999999999997 46889988876544
No 415
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.93 E-value=1.6e-05 Score=71.48 Aligned_cols=34 Identities=38% Similarity=0.643 Sum_probs=30.3
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~ 142 (452)
+||+++|++|||||||+++|+++.|...+.++++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~ 34 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF 34 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee
Confidence 4899999999999999999999999877777764
No 416
>KOG0448|consensus
Probab=97.93 E-value=3.3e-05 Score=81.57 Aligned_cols=148 Identities=14% Similarity=0.143 Sum_probs=83.8
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEE------------------------------------
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL------------------------------------ 281 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~------------------------------------ 281 (452)
....||+|.|+.+.|||+++|+++.++..++...-++.-|....
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 34689999999999999999999876655433222111110000
Q ss_pred -----EEeeecCC----eeEEEEEEecCCcch---hhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcC
Q psy14768 282 -----LSHKKYGG----RPVKLQIWDIAGQDR---YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDN 349 (452)
Q Consensus 282 -----i~~~~~~~----~~~~l~l~DtaG~e~---~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~ 349 (452)
+.++.-++ -.-.+.++|.||..- ..+-...+..++|++|||.++.+..+....+.+.. ..+
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~-vs~------ 259 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHK-VSE------ 259 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHH-hhc------
Confidence 00000001 001456778888542 23333566789999999999987665554433322 221
Q ss_pred CCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCC-------CEEEEecCCC
Q psy14768 350 GAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNF-------MSWIEVSSKE 393 (452)
Q Consensus 350 ~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~-------~~~~evSAkt 393 (452)
.+.-|.|+.||||... .+.-.+++..-..++.. ...|||||+.
T Consensus 260 -~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 260 -EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred -cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 1234778889999865 23333344333333332 2258999664
No 417
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.92 E-value=1e-05 Score=74.04 Aligned_cols=39 Identities=23% Similarity=0.397 Sum_probs=33.6
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~ 147 (452)
.+||++||++|||||||++||..+.|. .+.+|+|.++..
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~-~~~~T~~~~~~~ 55 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVV-TTIPTIGFNVET 55 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCccccceEE
Confidence 379999999999999999999888886 477899877653
No 418
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.92 E-value=1.2e-05 Score=71.43 Aligned_cols=34 Identities=32% Similarity=0.692 Sum_probs=31.7
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~ 142 (452)
+||+++|++|||||||++||+++.|...+.+|++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~ 35 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE 35 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh
Confidence 6999999999999999999999999988888875
No 419
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=97.92 E-value=1.3e-05 Score=73.40 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=35.1
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 150 (452)
.+||+++|.+|||||||++||..+.|.. +.+|+|.++....+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~ 44 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKV 44 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCC-cCCccccceeEEEe
Confidence 3799999999999999999999988874 47888877765544
No 420
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.91 E-value=1.4e-05 Score=72.61 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=33.9
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~ 147 (452)
.+||+++|++|||||||++||..+.|. .+.+|+|.++..
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~ 51 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET 51 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE
Confidence 489999999999999999999887775 578999887754
No 421
>KOG1191|consensus
Probab=97.91 E-value=1e-05 Score=82.53 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=60.6
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCCCC------------------CC
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ------------------TP 169 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~ 169 (452)
++|+|||+||||||||+|.+..+.-+ +...++-++|--...+...++.....|++++-. +.
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~ 348 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIER 348 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhh
Confidence 68999999999999999999998877 788888888887777777777766666666533 22
Q ss_pred ceeEEEEcCCCCCchh
Q psy14768 170 SYLILITGDSTVGKTS 185 (452)
Q Consensus 170 ~~~Il~vgD~~vGkTs 185 (452)
+..|+||+|+..+-|.
T Consensus 349 advi~~vvda~~~~t~ 364 (531)
T KOG1191|consen 349 ADVILLVVDAEESDTE 364 (531)
T ss_pred cCEEEEEecccccccc
Confidence 3479999998776554
No 422
>PRK04213 GTP-binding protein; Provisional
Probab=97.90 E-value=1.5e-05 Score=73.86 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=31.8
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
.++|+++|++|||||||+|++++..+...+.++++++.
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~ 46 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKP 46 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCc
Confidence 47999999999999999999999888766666665543
No 423
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.90 E-value=1.2e-05 Score=71.64 Aligned_cols=37 Identities=22% Similarity=0.430 Sum_probs=32.6
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
+||+++|.+|||||||++||..+.|. .+.||+|.++.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~ 37 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE 37 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE
Confidence 48999999999999999999888887 57899987764
No 424
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.90 E-value=1.4e-05 Score=70.95 Aligned_cols=44 Identities=50% Similarity=0.853 Sum_probs=38.1
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
+||+++|++|||||||+++|.+..+...+.++++.++....+..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~ 44 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEV 44 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE
Confidence 58999999999999999999999998888899988877655443
No 425
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.89 E-value=1.4e-05 Score=70.85 Aligned_cols=42 Identities=38% Similarity=0.820 Sum_probs=36.9
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 150 (452)
+||+++|++|||||||+++|.+..|...+.++++.++....+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~ 42 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKII 42 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEE
Confidence 489999999999999999999999988888998877765543
No 426
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=97.88 E-value=8.3e-06 Score=72.27 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=31.3
Q ss_pred EEEEEcCCCCchHHHHHHHhhccC-CCCCcCccccCce
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFS 146 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~~-~~~~~~~~~~~~~ 146 (452)
+|++||++|||||||+++|.+..+ ...+.+|+|..+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~ 38 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE 38 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE
Confidence 489999999999999999998764 5678899987654
No 427
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.88 E-value=1.9e-05 Score=71.10 Aligned_cols=38 Identities=29% Similarity=0.526 Sum_probs=34.3
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
.||+++|++|||||||+++|.++.|...|.+|++..+.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~ 39 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV 39 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE
Confidence 48999999999999999999999999889999876653
No 428
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.88 E-value=1.8e-05 Score=70.28 Aligned_cols=44 Identities=41% Similarity=0.729 Sum_probs=38.2
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
+||+++|++|||||+|+|+|+++.+...+.++.|.++....+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~ 45 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNL 45 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE
Confidence 79999999999999999999999998778889887776655543
No 429
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.87 E-value=1.7e-05 Score=71.38 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=31.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
||+++|.+|||||||++||.+..|. .+.+|+|.++.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~ 36 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE 36 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE
Confidence 6899999999999999999998776 58899887775
No 430
>PRK13796 GTPase YqeH; Provisional
Probab=97.87 E-value=6.7e-05 Score=76.36 Aligned_cols=93 Identities=16% Similarity=0.249 Sum_probs=62.9
Q ss_pred hhhhhhhhhhcCCC-EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHH----H
Q psy14768 304 RYICMSRVYYQNSD-GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAV----C 378 (452)
Q Consensus 304 ~~~~~~~~~i~~ad-~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~----~ 378 (452)
.|..+... +..+| .+++|+|+.+.. ..|...+.+.. .++|+++|+||.|+.......+.+.+| .
T Consensus 58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~ 126 (365)
T PRK13796 58 DFLKLLNG-IGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEA 126 (365)
T ss_pred HHHHHHHh-hcccCcEEEEEEECccCC-----CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHH
Confidence 34443333 34455 999999998743 22444555431 257999999999997644444444444 4
Q ss_pred HHcCCC--EEEEecCCCCccHHHHHHHHHHH
Q psy14768 379 HQYNFM--SWIEVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 379 ~~~~~~--~~~evSAktg~nv~~lf~~i~~~ 407 (452)
+.+++. .++++||+++.|++++++.+.+.
T Consensus 127 k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 127 KELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred HhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 555652 47999999999999999999764
No 431
>KOG0081|consensus
Probab=97.86 E-value=7.4e-07 Score=77.54 Aligned_cols=49 Identities=39% Similarity=0.687 Sum_probs=44.8
Q ss_pred CCcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 103 ~~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
.++++++|.+.+||+||||||++.||.+++|....+.|||+||..+.+.
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvv 52 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVV 52 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEE
Confidence 3568889999999999999999999999999999999999999887654
No 432
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.86 E-value=1.5e-05 Score=83.12 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=41.7
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCC
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSP 165 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (452)
+||+|+|+||||||||+|+|++..++ ....++.++++....+........+.++.+.
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~ 261 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGI 261 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCc
Confidence 79999999999999999999987654 4455666777766666655544445555543
No 433
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.86 E-value=2.4e-05 Score=70.54 Aligned_cols=33 Identities=36% Similarity=0.650 Sum_probs=29.3
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCcc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~ 141 (452)
+||+++|++|||||||+++|.++.|..+|.+|+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~ 33 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA 33 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce
Confidence 589999999999999999999988887777775
No 434
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.85 E-value=1.3e-05 Score=70.21 Aligned_cols=37 Identities=27% Similarity=0.431 Sum_probs=34.1
Q ss_pred EEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768 111 ILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147 (452)
Q Consensus 111 v~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~ 147 (452)
|+|+|++|||||||++++.+..|..++.+|++.++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~ 38 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK 38 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE
Confidence 7899999999999999999999999999999888754
No 435
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.85 E-value=1.6e-05 Score=70.75 Aligned_cols=42 Identities=48% Similarity=0.710 Sum_probs=36.2
Q ss_pred EEEEEEcCCCCchHHHHHHHhhc--cCCCCCcCccccCceeeee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQN--KFLDNYKNTVGVDFSTKLL 150 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~--~~~~~~~~~~~~~~~~~~~ 150 (452)
+||++||++|||||||++++.++ .|..+|.+|+|.++..+.+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~ 44 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEV 44 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEE
Confidence 48999999999999999999865 7888899999988765554
No 436
>PLN03118 Rab family protein; Provisional
Probab=97.85 E-value=2.5e-05 Score=73.12 Aligned_cols=46 Identities=41% Similarity=0.657 Sum_probs=37.7
Q ss_pred cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
....+||+|||++|||||||+++|+++.+. .+.+++|.++....+.
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~ 56 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLT 56 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEE
Confidence 344589999999999999999999998885 6788888877655443
No 437
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.84 E-value=2.1e-05 Score=73.87 Aligned_cols=44 Identities=30% Similarity=0.600 Sum_probs=38.9
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 150 (452)
..+||+++|++|||||||++||+.+.|...|.+|+|.++....+
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~ 51 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKF 51 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEE
Confidence 34899999999999999999999999998999999988866544
No 438
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.83 E-value=2.2e-05 Score=70.32 Aligned_cols=31 Identities=35% Similarity=0.682 Sum_probs=26.9
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcC
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKN 139 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~ 139 (452)
+||++||++|||||||++||..++|...+..
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~ 31 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPR 31 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCC
Confidence 3899999999999999999999999755443
No 439
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.82 E-value=1.8e-05 Score=72.34 Aligned_cols=39 Identities=23% Similarity=0.413 Sum_probs=33.9
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~ 147 (452)
.+||+++|++|||||||++||..+.|. .+.||+|.++..
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~ 55 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET 55 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEE
Confidence 479999999999999999999988886 578999887653
No 440
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=97.82 E-value=2.4e-05 Score=69.37 Aligned_cols=42 Identities=50% Similarity=0.768 Sum_probs=36.9
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 150 (452)
+||+++|++|||||||+++|.+..+...+.++++.++....+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~ 42 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTL 42 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEE
Confidence 589999999999999999999999987788999888765544
No 441
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.82 E-value=6.5e-05 Score=73.56 Aligned_cols=90 Identities=13% Similarity=0.103 Sum_probs=60.3
Q ss_pred hhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEE
Q psy14768 309 SRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIE 388 (452)
Q Consensus 309 ~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~e 388 (452)
....++.+|++|+|+|+.++.+..+.. +..+. .++|+++|+||+|+.+... .+...++.+..+. .+++
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~~~--i~~~l--------~~kp~IiVlNK~DL~~~~~-~~~~~~~~~~~~~-~vi~ 82 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRNPM--IDEIR--------GNKPRLIVLNKADLADPAV-TKQWLKYFEEKGI-KALA 82 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCChh--HHHHH--------CCCCEEEEEEccccCCHHH-HHHHHHHHHHcCC-eEEE
Confidence 356789999999999998875543321 11111 1389999999999964211 1111122233343 4799
Q ss_pred ecCCCCccHHHHHHHHHHHHHH
Q psy14768 389 VSSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 389 vSAktg~nv~~lf~~i~~~i~~ 410 (452)
+||+++.+++++++.+.+.+.+
T Consensus 83 iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 83 INAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred EECCCcccHHHHHHHHHHHHHH
Confidence 9999999999999988777644
No 442
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.81 E-value=3.4e-05 Score=68.92 Aligned_cols=46 Identities=39% Similarity=0.624 Sum_probs=38.6
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
...+||+++|.+|||||||++++.+..+...+.++++.++....+.
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~ 50 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVE 50 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEE
Confidence 3568999999999999999999999888877888888777655443
No 443
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.81 E-value=2.3e-05 Score=72.07 Aligned_cols=41 Identities=44% Similarity=0.809 Sum_probs=35.5
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKL 149 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~ 149 (452)
+||+|||++|||||||++||+...|. ..+.+|++.++..+.
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~ 42 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKV 42 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEE
Confidence 48999999999999999999999987 478889888876544
No 444
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.81 E-value=1.8e-05 Score=70.64 Aligned_cols=36 Identities=33% Similarity=0.634 Sum_probs=31.6
Q ss_pred EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
||++||++|||||||++||+.+.|..+|.++.+..+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~ 36 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY 36 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc
Confidence 689999999999999999999999878888875444
No 445
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.81 E-value=2.3e-05 Score=74.10 Aligned_cols=43 Identities=21% Similarity=0.419 Sum_probs=35.4
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~ 151 (452)
+||++||++|||||||+++|+.+.|. ..+.++++.++..+.+.
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~ 44 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVS 44 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEE
Confidence 48999999999999999999988887 77888887666554443
No 446
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=97.81 E-value=1.5e-05 Score=80.63 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=33.4
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
.++|+|||.+|||||||+|+|++..+.....+..++|+..+.+..
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~ 233 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDL 233 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEe
Confidence 479999999999999999999998765444444445665555544
No 447
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.81 E-value=3.6e-05 Score=70.07 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=30.7
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
..++|+|+|++|||||||+|++++..+...+.+++|...
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~ 55 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQ 55 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcce
Confidence 347999999999999999999999876545555555443
No 448
>KOG1143|consensus
Probab=97.80 E-value=0.00017 Score=71.35 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=64.2
Q ss_pred EEEEEEecCCcchhhhhhhhhhc--CCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcc
Q psy14768 292 VKLQIWDIAGQDRYICMSRVYYQ--NSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQV 369 (452)
Q Consensus 292 ~~l~l~DtaG~e~~~~~~~~~i~--~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~ 369 (452)
..+.|+|.||+.+|.......+. --|.++||+.+..+..+..-+.+. .+.. -++|+.++++|.|+.+++-
T Consensus 249 KlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLg-l~~A-------L~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 249 KLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLG-LIAA-------LNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred ceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHH-HHHH-------hCCCeEEEEEeeccccchh
Confidence 34678899999999765443332 358889999998876554433322 2222 2499999999999976322
Q ss_pred c---HHHHHHHHHHc-------------------------CCCEEEEecCCCCccHHH
Q psy14768 370 E---INEIEAVCHQY-------------------------NFMSWIEVSSKEHLMIED 399 (452)
Q Consensus 370 ~---~e~~~~~~~~~-------------------------~~~~~~evSAktg~nv~~ 399 (452)
. ..++..+..+. ++.++|-+|..+|++++-
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l 378 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL 378 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH
Confidence 2 22222222222 345679999999988763
No 449
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.79 E-value=2.3e-05 Score=69.67 Aligned_cols=35 Identities=37% Similarity=0.690 Sum_probs=31.3
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCcccc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGV 143 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~ 143 (452)
+||+++|++|||||||+++|++..|...+.+|++-
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~ 35 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIED 35 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhh
Confidence 48999999999999999999999998888887753
No 450
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.78 E-value=2.6e-05 Score=68.04 Aligned_cols=44 Identities=55% Similarity=0.865 Sum_probs=38.3
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
+||+++|.+|||||||++++.+..+...+.+|.+.++....+..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~ 44 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEI 44 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEE
Confidence 48999999999999999999999999888899888877665543
No 451
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.78 E-value=2.1e-05 Score=72.29 Aligned_cols=36 Identities=33% Similarity=0.650 Sum_probs=32.6
Q ss_pred EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
||++||++|||||||++||+.+.|...+.+|++..+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~ 36 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY 36 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE
Confidence 689999999999999999999999988889987555
No 452
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.77 E-value=2.5e-05 Score=69.78 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=28.7
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCcc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~ 141 (452)
+||++||++|||||||++||+++.|...+.++.
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~ 33 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG 33 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc
Confidence 489999999999999999999999986665543
No 453
>PRK11058 GTPase HflX; Provisional
Probab=97.77 E-value=2.7e-05 Score=80.75 Aligned_cols=57 Identities=9% Similarity=0.084 Sum_probs=39.9
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeecccc-CCCCCCCCCC
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY-GGRPYGTFSP 165 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 165 (452)
++|+|||.+|||||||||++++..+.....+..++|.....+.+... .....|+.+.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~ 255 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGF 255 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcc
Confidence 58999999999999999999998776545555566666655554332 3344555554
No 454
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.77 E-value=2.1e-05 Score=72.92 Aligned_cols=33 Identities=33% Similarity=0.681 Sum_probs=30.1
Q ss_pred EEEEEcCCCCchHHHHHHHhhccCCCCCcCccc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~ 142 (452)
||++||++|||||||++||++..|...+.+|++
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~ 33 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE 33 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh
Confidence 689999999999999999999999877888874
No 455
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.77 E-value=3.6e-05 Score=75.05 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=23.3
Q ss_pred EEEEEcCCCCchHHHHHHHhhccCC
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNKFL 134 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~~~ 134 (452)
+|++||+||||||||+|++++.+++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~ 26 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKIS 26 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEe
Confidence 6899999999999999999998875
No 456
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.76 E-value=2.5e-05 Score=73.15 Aligned_cols=43 Identities=35% Similarity=0.588 Sum_probs=38.4
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
+||+++|++|||||||++||.++.|...+.+|++..+......
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~ 48 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIE 48 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEE
Confidence 8999999999999999999999999999999998777655543
No 457
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.76 E-value=1.6e-05 Score=71.52 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=30.6
Q ss_pred EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
+|+++|.+|||||||+++|+++ |...+.+|+|...
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~ 35 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP 35 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE
Confidence 4799999999999999999977 7778899998754
No 458
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.76 E-value=1.5e-05 Score=72.36 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=41.0
Q ss_pred CcccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~ 302 (452)
..++++++|.||+|||||+|++.+.. ......++++.+..... . + ..+.++||||.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~--~---~---~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVH--L---D---KKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEE--e---C---CCEEEEECcCC
Confidence 34789999999999999999999844 35566677766544332 2 2 14778899984
No 459
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.75 E-value=3.5e-05 Score=69.56 Aligned_cols=38 Identities=21% Similarity=0.437 Sum_probs=31.4
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
.+||+++|++|||||||+++|.++.+. .+.+|+|....
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~~~ 51 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQIK 51 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccceE
Confidence 379999999999999999999988554 67788875443
No 460
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.74 E-value=1.8e-05 Score=70.63 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=38.0
Q ss_pred cccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~ 302 (452)
.+.++++|.||||||||+|++.+.. ......++++.+... +.. + . .+.++||||.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~--~~~---~-~--~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY--ITL---M-K--RIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEE--EEc---C-C--CEEEEECcCC
Confidence 5678999999999999999999843 345555665544322 222 2 2 2668899994
No 461
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.74 E-value=0.00016 Score=71.80 Aligned_cols=114 Identities=18% Similarity=0.360 Sum_probs=70.4
Q ss_pred cccEEEeeecccCCcceeeeccccccccc----------cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch-----
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDN----------YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR----- 304 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~----------~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~----- 304 (452)
.+.|.++|.+|.|||||+|.|++...... ..+++........+.- ++..+.+.++||+|-=.
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e---~~~~~~l~vIDtpGfGD~idNs 99 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEE---DGFHLNLTVIDTPGFGDFIDNS 99 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeec---CCeEEEEEEeccCCcccccccc
Confidence 47889999999999999999997643322 2234444444444444 77788999999998211
Q ss_pred --------h-hhhhhhh------------hc--CCCEEEEEEeCCChhhHHHHHH-HHHHHHhhhhhcCCCCCcEEEEEE
Q psy14768 305 --------Y-ICMSRVY------------YQ--NSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLAS 360 (452)
Q Consensus 305 --------~-~~~~~~~------------i~--~ad~vIlV~D~t~~~S~~~~~~-~~~~i~~~~~~~~~~~~piilV~N 360 (452)
| ..+...| +. +.|++|+.+-.+ +.....+.. .+..+... +-+|=|+-
T Consensus 100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Pt-gh~l~~~DIe~Mk~ls~~--------vNlIPVI~ 170 (373)
T COG5019 100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPT-GHGLKPLDIEAMKRLSKR--------VNLIPVIA 170 (373)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCC-CCCCCHHHHHHHHHHhcc--------cCeeeeee
Confidence 0 0111111 11 368888888865 333333322 34444444 56777888
Q ss_pred CCCCC
Q psy14768 361 KCDLP 365 (452)
Q Consensus 361 K~Dl~ 365 (452)
|.|..
T Consensus 171 KaD~l 175 (373)
T COG5019 171 KADTL 175 (373)
T ss_pred ccccC
Confidence 99974
No 462
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.74 E-value=5e-05 Score=68.89 Aligned_cols=55 Identities=33% Similarity=0.617 Sum_probs=45.5
Q ss_pred eeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec
Q psy14768 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229 (452)
Q Consensus 171 ~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~ 229 (452)
++|+++|+.+||||+|+.+|..+.|..++.+++...+... + .+++..+.+.+||+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~-~---~~~~~~~~l~i~Dt 56 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-V---MVDGKPVNLGLWDT 56 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEE-E---EECCEEEEEEEEEC
Confidence 6899999999999999999999999999999886544332 2 24577788999998
No 463
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.73 E-value=9.2e-05 Score=68.63 Aligned_cols=34 Identities=32% Similarity=0.430 Sum_probs=25.9
Q ss_pred EEEEEEcCCCCchHHHHH-HHhhcc-----CCCCCcCccc
Q psy14768 109 LKILVIGDSTVGKTSYVQ-GFVQNK-----FLDNYKNTVG 142 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~-r~~~~~-----~~~~~~~~~~ 142 (452)
+||++||++|||||||++ ||.++. |..+|.||+|
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~ 42 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVW 42 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCcee
Confidence 799999999999999996 665543 3455667764
No 464
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.72 E-value=3.5e-05 Score=69.10 Aligned_cols=37 Identities=38% Similarity=0.699 Sum_probs=33.2
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
+||++||++|||||||+++|.++.|...+.+|++..+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~ 38 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY 38 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE
Confidence 6899999999999999999999999888888887554
No 465
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=97.72 E-value=2.1e-05 Score=69.71 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=30.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
||++||++|||||+|++++..+.+. .+.+|+|.++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~ 36 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE 36 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE
Confidence 6899999999999999999888776 56788877654
No 466
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.71 E-value=2e-05 Score=68.99 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=37.4
Q ss_pred cEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~ 302 (452)
+++++|.+|+|||||+|+++++... ....++.+.+. ..+.. ++ .+.||||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~--~~~~~---~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHF--QTIFL---TP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccce--EEEEe---CC---CEEEEECCCc
Confidence 8999999999999999999986543 33334444433 33333 33 4689999995
No 467
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.71 E-value=2.7e-05 Score=68.96 Aligned_cols=37 Identities=19% Similarity=0.415 Sum_probs=31.2
Q ss_pred EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~ 147 (452)
+|+++|.+|||||||+++|.+..+. .+.+|+|.++..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~~t~~~~~~~ 37 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-TTIPTVGFNVEM 37 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-cccCccCcceEE
Confidence 5899999999999999999999887 457888766543
No 468
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.70 E-value=6.4e-05 Score=69.09 Aligned_cols=54 Identities=28% Similarity=0.529 Sum_probs=45.5
Q ss_pred eEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec
Q psy14768 172 LILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229 (452)
Q Consensus 172 ~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~ 229 (452)
+|+++|+.++|||+|+.+|..+.|...+.+++...+...+ .+++..+.+.+||+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i----~~~~~~~~l~i~Dt 55 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDI----FVDGLHIELSLWDT 55 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEE----EECCEEEEEEEEEC
Confidence 7999999999999999999999999888899877765433 24567788999998
No 469
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.70 E-value=0.00016 Score=71.24 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=60.4
Q ss_pred hhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEE
Q psy14768 309 SRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIE 388 (452)
Q Consensus 309 ~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~e 388 (452)
....++.+|++|+|+|+.++.+.++. ++..+.. ++|+++|+||+|+.+... .+...++.+..+. .++.
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~~~--------~kp~iiVlNK~DL~~~~~-~~~~~~~~~~~~~-~vi~ 85 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSENP--MIDKIIG--------NKPRLLILNKSDLADPEV-TKKWIEYFEEQGI-KALA 85 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCCh--hHHHHhC--------CCCEEEEEEchhcCCHHH-HHHHHHHHHHcCC-eEEE
Confidence 35678999999999999887654331 1111111 389999999999964211 1112222233343 3799
Q ss_pred ecCCCCccHHHHHHHHHHHHHH
Q psy14768 389 VSSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 389 vSAktg~nv~~lf~~i~~~i~~ 410 (452)
+||+++.+++++++.+...+.+
T Consensus 86 vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 86 INAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred EECCCcccHHHHHHHHHHHHHH
Confidence 9999999999999988777644
No 470
>KOG0463|consensus
Probab=97.69 E-value=0.00051 Score=67.96 Aligned_cols=160 Identities=11% Similarity=0.146 Sum_probs=89.9
Q ss_pred CCCCCCCcccEEEeeecccCCcceeeeccccccc------------------cccCCcceeeeEE-----EEEEeee---
Q psy14768 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFL------------------DNYKNTVGVDFST-----KLLSHKK--- 286 (452)
Q Consensus 233 l~~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~------------------~~~~~t~~~d~~~-----~~i~~~~--- 286 (452)
....+..+++++++|.-.+|||||+--+...... ....+.+|.|+.- ..+..+.
T Consensus 126 ~~~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg 205 (641)
T KOG0463|consen 126 PTEKDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHG 205 (641)
T ss_pred CCCccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCC
Confidence 3344566799999999999999999877642211 1111222222211 1111000
Q ss_pred --------cCCeeEEEEEEecCCcchhhhhhhhhh--cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEE
Q psy14768 287 --------YGGRPVKLQIWDIAGQDRYICMSRVYY--QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356 (452)
Q Consensus 287 --------~~~~~~~l~l~DtaG~e~~~~~~~~~i--~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~pii 356 (452)
+.+....+.|+|.+|+|+|-...-.-+ .--|..+|++-+.-+.---.-+.+...+.- ++|++
T Consensus 206 ~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL--------~VPVf 277 (641)
T KOG0463|consen 206 HNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALAL--------HVPVF 277 (641)
T ss_pred CcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhh--------cCcEE
Confidence 012223467889999999875432222 235777888877654211111222233333 39999
Q ss_pred EEEECCCCCCCc---ccHHHHHHHHHHcC-------------------------CCEEEEecCCCCccHHHH
Q psy14768 357 LLASKCDLPDRQ---VEINEIEAVCHQYN-------------------------FMSWIEVSSKEHLMIEDS 400 (452)
Q Consensus 357 lV~NK~Dl~~~~---~~~e~~~~~~~~~~-------------------------~~~~~evSAktg~nv~~l 400 (452)
+|++|+|..... .....+..+.+..+ .+++|.+|-.+|+|+.-+
T Consensus 278 vVVTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL 349 (641)
T KOG0463|consen 278 VVVTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL 349 (641)
T ss_pred EEEEeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH
Confidence 999999986522 22222333333221 245799999999998643
No 471
>KOG3887|consensus
Probab=97.69 E-value=0.00036 Score=65.30 Aligned_cols=165 Identities=14% Similarity=0.191 Sum_probs=96.5
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh-hh--hhhhhhcCC
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY-IC--MSRVYYQNS 316 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~-~~--~~~~~i~~a 316 (452)
..+|+++|..-+||||+..-........+ |.-.+... .+...+..+.-+.+++||.|||-.| .. -....++.+
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPne---TlflESTs-ki~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~ 102 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNE---TLFLESTS-KITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGV 102 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCc---eeEeeccC-cccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhcc
Confidence 35699999999999998665443221111 11111111 1111111334577999999998643 22 235678999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--------CcccH----HHHHHHHHHcCCC
Q psy14768 317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--------RQVEI----NEIEAVCHQYNFM 384 (452)
Q Consensus 317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--------~~~~~----e~~~~~~~~~~~~ 384 (452)
-+.|+|+|+.+. -.+.+..+...+.+. +.-++++-+-+++.|.|-.. +.+.. +....-.......
T Consensus 103 gALifvIDaQdd-y~eala~L~~~v~ra--ykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vs 179 (347)
T KOG3887|consen 103 GALIFVIDAQDD-YMEALARLHMTVERA--YKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVS 179 (347)
T ss_pred CeEEEEEechHH-HHHHHHHHHHHhhhe--eecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEE
Confidence 999999999753 233444444444443 33567788899999999753 11111 1111111222222
Q ss_pred EEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 385 SWIEVSSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 385 ~~~evSAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
|+-+|-. .+.|.++|..+++.++..-.
T Consensus 180 -f~LTSIy-DHSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 180 -FYLTSIY-DHSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred -EEEeeec-chHHHHHHHHHHHHHhhhch
Confidence 5555554 67899999999988876544
No 472
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.68 E-value=7.8e-05 Score=68.44 Aligned_cols=39 Identities=28% Similarity=0.315 Sum_probs=31.5
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
..++|+|||++|||||||+|++++.+|...+.++.|...
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~ 61 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQ 61 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcee
Confidence 457899999999999999999999876656666665443
No 473
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.67 E-value=3.7e-05 Score=67.99 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=25.6
Q ss_pred EEEEEcCCCCchHHHHHHHhhc---cCCCCCcCccccCc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN---KFLDNYKNTVGVDF 145 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~---~~~~~~~~~~~~~~ 145 (452)
-|+++|++|||||||+++|++. .+..++.++.+++.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~ 40 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDL 40 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEe
Confidence 4899999999999999999963 34334444443333
No 474
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=97.67 E-value=5.1e-05 Score=66.87 Aligned_cols=41 Identities=37% Similarity=0.616 Sum_probs=33.7
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~ 149 (452)
+||+++|.+|||||||+++|++..+...+.++.+.++....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~ 41 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKT 41 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEE
Confidence 48999999999999999999999988777777655554433
No 475
>KOG0460|consensus
Probab=97.67 E-value=0.00019 Score=70.19 Aligned_cols=143 Identities=16% Similarity=0.153 Sum_probs=93.7
Q ss_pred CCcccEEEeeecccCCcceeeeccc----------------cccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQ----------------NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~----------------~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG 301 (452)
....+|.-+|.-.-|||||.-++.. ++..++...+++++........ ..-.+-=.|++|
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeT-----a~RhYaH~DCPG 126 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYET-----AKRHYAHTDCPG 126 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeec-----cccccccCCCCc
Confidence 3457788899999999999655441 1112233345565554444433 333455669999
Q ss_pred cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC----CcccHHHHHHH
Q psy14768 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD----RQVEINEIEAV 377 (452)
Q Consensus 302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~----~~~~~e~~~~~ 377 (452)
+..|-..+..-..+-|++|||+.++|+.--|.-+.++.. ++. .-.-+++++||.|+.+ .+..+-+++++
T Consensus 127 HADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLA-rQV------GV~~ivvfiNKvD~V~d~e~leLVEmE~REl 199 (449)
T KOG0460|consen 127 HADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLA-RQV------GVKHIVVFINKVDLVDDPEMLELVEMEIREL 199 (449)
T ss_pred hHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHH-HHc------CCceEEEEEecccccCCHHHHHHHHHHHHHH
Confidence 999988776667788999999999998654544333221 221 1134888999999985 34455678888
Q ss_pred HHHcCCC----EEEEecCC
Q psy14768 378 CHQYNFM----SWIEVSSK 392 (452)
Q Consensus 378 ~~~~~~~----~~~evSAk 392 (452)
+..+++. |.+.-||+
T Consensus 200 Lse~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 200 LSEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred HHHcCCCCCCCCeeecchh
Confidence 9998873 45665554
No 476
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=97.67 E-value=4.9e-05 Score=79.54 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=40.9
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCC
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFS 164 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (452)
++|+++|.+|||||||+|+|++..+. ....++.++|+....+...+......|+.+
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G 272 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAG 272 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCC
Confidence 68999999999999999999998764 455666677776666555544444444444
No 477
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.67 E-value=7.3e-05 Score=69.39 Aligned_cols=28 Identities=11% Similarity=0.334 Sum_probs=24.9
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFL 134 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~ 134 (452)
..++|+|+|++|||||||+|++++..+.
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~ 67 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVY 67 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhc
Confidence 3479999999999999999999998754
No 478
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.66 E-value=4.8e-05 Score=67.32 Aligned_cols=37 Identities=27% Similarity=0.635 Sum_probs=32.3
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
+||+++|.+|||||||++++++..|...+.++++..+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~ 37 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY 37 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE
Confidence 4899999999999999999999999877787776544
No 479
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.66 E-value=4.8e-05 Score=67.73 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=29.1
Q ss_pred EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
.|+|+|++|||||||+++|.+..+...+.++.+.++.
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~ 38 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIG 38 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeec
Confidence 4899999999999999999998887554444444443
No 480
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.66 E-value=4.2e-05 Score=66.33 Aligned_cols=42 Identities=31% Similarity=0.697 Sum_probs=36.4
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 150 (452)
+||+++|.+|+|||||++++.+..+...+.++++.++....+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~ 43 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVI 43 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEE
Confidence 689999999999999999999999878888888887766443
No 481
>KOG0088|consensus
Probab=97.66 E-value=2.8e-05 Score=67.78 Aligned_cols=59 Identities=32% Similarity=0.509 Sum_probs=53.1
Q ss_pred CCceeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec
Q psy14768 168 TPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229 (452)
Q Consensus 168 ~~~~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~ 229 (452)
.-.|+|+++|.+.||||+|+.||+.|+|......++...|..+.+ .+++....+.|||+
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~---n~ed~ra~L~IWDT 69 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKV---NVEDCRADLHIWDT 69 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccc---ccccceeeeeeeec
Confidence 345899999999999999999999999999999999998888777 46689999999999
No 482
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.64 E-value=6e-05 Score=68.22 Aligned_cols=38 Identities=21% Similarity=0.468 Sum_probs=32.9
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~ 147 (452)
+||+++|.+|||||||++++..+.|.. +.+|+|.++..
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~ 53 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE 53 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE
Confidence 699999999999999999999888874 67888877644
No 483
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.63 E-value=4.7e-05 Score=73.32 Aligned_cols=55 Identities=36% Similarity=0.631 Sum_probs=46.1
Q ss_pred eeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec
Q psy14768 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229 (452)
Q Consensus 171 ~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~ 229 (452)
++|++||+.++|||+|+.+|..+.|...+.+++. +++.+.+ .+++..+.+.+||+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~---~i~~~~~~l~I~Dt 55 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLY---SIRGEVYQLDILDT 55 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEE---EECCEEEEEEEEEC
Confidence 4799999999999999999999999988888886 5554444 34577788999999
No 484
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.63 E-value=6e-05 Score=68.97 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=30.6
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
.+||+++|.+|||||||++++.+++|. .+.+|.+...
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~ 53 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS 53 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce
Confidence 379999999999999999999998876 4566765543
No 485
>KOG0467|consensus
Probab=97.62 E-value=0.00013 Score=77.80 Aligned_cols=114 Identities=17% Similarity=0.210 Sum_probs=79.9
Q ss_pred cccEEEeeecccCCcceeeeccc-cccccccCCc-------------ceeeeEEEEEEeeecCCeeEEEEEEecCCcchh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQ-NKFLDNYKNT-------------VGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY 305 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~-~~~~~~~~~t-------------~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~ 305 (452)
.-+++++-.-.-|||||+..++. +..+....++ -|..-....+.. -.+.+.+.++|+||+-.|
T Consensus 9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~---~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISL---LHKDYLINLIDSPGHVDF 85 (887)
T ss_pred eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccc---ccCceEEEEecCCCccch
Confidence 34678888899999999988875 2233222221 122222222322 346788999999999999
Q ss_pred hhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCC
Q psy14768 306 ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDL 364 (452)
Q Consensus 306 ~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl 364 (452)
.+....+.+-+|++++++|+.++..-|......+.+... ..++||+||+|.
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~--------~~~~lvinkidr 136 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEG--------LKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHcc--------CceEEEEehhhh
Confidence 988888888999999999999887666554444444433 778999999993
No 486
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.61 E-value=6.1e-05 Score=68.20 Aligned_cols=38 Identities=39% Similarity=0.657 Sum_probs=33.2
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
.||+|+|++|||||||+++|....|...+.+|.+..+.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~ 39 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFS 39 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEE
Confidence 58999999999999999999999998778888766553
No 487
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.60 E-value=6e-05 Score=67.18 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=30.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhccC------CCCCcCccccCceeee
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNKF------LDNYKNTVGVDFSTKL 149 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~~------~~~~~~~~~~~~~~~~ 149 (452)
+|++||++|||||||++++.+... ...+.+|++.++....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~ 46 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIE 46 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEE
Confidence 489999999999999999986432 2456778877775443
No 488
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.59 E-value=6.9e-05 Score=66.91 Aligned_cols=34 Identities=41% Similarity=0.656 Sum_probs=30.5
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~ 142 (452)
+||+++|++|||||||+++|++..|...+.+++.
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~ 34 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF 34 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee
Confidence 5899999999999999999999999777777764
No 489
>KOG0099|consensus
Probab=97.57 E-value=0.00034 Score=66.16 Aligned_cols=124 Identities=11% Similarity=0.012 Sum_probs=83.3
Q ss_pred eeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCCh-------hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECC
Q psy14768 290 RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNR-------KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362 (452)
Q Consensus 290 ~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~-------~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~ 362 (452)
..+.|+++|.+||+.-+.-|.+++....++|+|...+.. .+-+.++..+..++..-+++....+.+||++||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 456799999999999999999999999999999887654 2334444444444444333455669999999999
Q ss_pred CCCCC-----------------------------cccHHH--HHHHHHHc------------CCCEEEEecCCCCccHHH
Q psy14768 363 DLPDR-----------------------------QVEINE--IEAVCHQY------------NFMSWIEVSSKEHLMIED 399 (452)
Q Consensus 363 Dl~~~-----------------------------~~~~e~--~~~~~~~~------------~~~~~~evSAktg~nv~~ 399 (452)
|+..+ ..+... ++.+.+.. ..+.+.|+.|.+-+||..
T Consensus 280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr 359 (379)
T KOG0099|consen 280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 359 (379)
T ss_pred HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence 98420 000000 11111110 113348999999999999
Q ss_pred HHHHHHHHHHHhhh
Q psy14768 400 SMNFLVDRIICSKR 413 (452)
Q Consensus 400 lf~~i~~~i~~~~~ 413 (452)
+|......|...+-
T Consensus 360 VFnDcrdiIqr~hl 373 (379)
T KOG0099|consen 360 VFNDCRDIIQRMHL 373 (379)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998777765443
No 490
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.56 E-value=8.4e-05 Score=65.66 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=30.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~ 147 (452)
||+++|.+|||||||++++++..+. .+.+|++.....
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~~~ 37 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNVET 37 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcceEE
Confidence 6899999999999999999998854 677788766543
No 491
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=97.54 E-value=7.6e-05 Score=65.65 Aligned_cols=51 Identities=14% Similarity=0.045 Sum_probs=35.5
Q ss_pred EEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeeccccCCCCCCCC
Q psy14768 113 VIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTF 163 (452)
Q Consensus 113 ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (452)
|+|++|||||||+|++++..+...+.++.++++....+.+........++.
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtp 51 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLP 51 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECC
Confidence 589999999999999999876655666667776655555543333333333
No 492
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.54 E-value=9.2e-05 Score=78.82 Aligned_cols=52 Identities=19% Similarity=0.141 Sum_probs=40.4
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeeccccCCCCC
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (452)
.+|++||.||||||||||++++.+.....=|+++++..+-....++...++.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~iv 55 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIV 55 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEE
Confidence 5699999999999999999999988877777887777666655555443333
No 493
>KOG2655|consensus
Probab=97.54 E-value=0.0002 Score=71.56 Aligned_cols=114 Identities=16% Similarity=0.335 Sum_probs=70.5
Q ss_pred cccEEEeeecccCCcceeeeccccccccc---------cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc-------
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDN---------YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD------- 303 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~---------~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e------- 303 (452)
.+.+.++|++|.|||||+|.|+...+... ...+.........+.- ++..+.|.++||+|-=
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee---~g~~l~LtvidtPGfGD~vdns~ 97 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEE---NGVKLNLTVIDTPGFGDAVDNSN 97 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecC---CCeEEeeEEeccCCCcccccccc
Confidence 47888999999999999999886543321 1224444444444444 6788899999999821
Q ss_pred hhh-------hhhh-----------hhhc--CCCEEEEEEeCCChhhHHHHHH-HHHHHHhhhhhcCCCCCcEEEEEECC
Q psy14768 304 RYI-------CMSR-----------VYYQ--NSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362 (452)
Q Consensus 304 ~~~-------~~~~-----------~~i~--~ad~vIlV~D~t~~~S~~~~~~-~~~~i~~~~~~~~~~~~piilV~NK~ 362 (452)
.+. .... ..+. +.|++++.+..+- .....+.. .+..+... +.+|=|+-|.
T Consensus 98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~Di~~Mk~l~~~--------vNiIPVI~Ka 168 (366)
T KOG2655|consen 98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLDIEFMKKLSKK--------VNLIPVIAKA 168 (366)
T ss_pred cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhhHHHHHHHhcc--------ccccceeecc
Confidence 010 1111 1233 5789999888763 22333322 23334333 6788888899
Q ss_pred CCC
Q psy14768 363 DLP 365 (452)
Q Consensus 363 Dl~ 365 (452)
|..
T Consensus 169 D~l 171 (366)
T KOG2655|consen 169 DTL 171 (366)
T ss_pred ccC
Confidence 974
No 494
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.53 E-value=0.00015 Score=64.35 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=23.6
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFL 134 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~ 134 (452)
++|+++|++|+|||||+|++++..+.
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~ 28 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERV 28 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccce
Confidence 68999999999999999999987654
No 495
>PRK01889 GTPase RsgA; Reviewed
Probab=97.52 E-value=0.00035 Score=70.92 Aligned_cols=84 Identities=14% Similarity=0.091 Sum_probs=59.9
Q ss_pred hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHH-HcCCCEEEEec
Q psy14768 312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH-QYNFMSWIEVS 390 (452)
Q Consensus 312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~-~~~~~~~~evS 390 (452)
...++|.+++|+++........+..++..++.. +++.+||+||+||.+. ..+..+.+.. ..+.. .+.+|
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~-------~i~piIVLNK~DL~~~--~~~~~~~~~~~~~g~~-Vi~vS 178 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES-------GAEPVIVLTKADLCED--AEEKIAEVEALAPGVP-VLAVS 178 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc-------CCCEEEEEEChhcCCC--HHHHHHHHHHhCCCCc-EEEEE
Confidence 368899999999997666666666766666554 4778899999999752 1112222222 23444 79999
Q ss_pred CCCCccHHHHHHHHH
Q psy14768 391 SKEHLMIEDSMNFLV 405 (452)
Q Consensus 391 Aktg~nv~~lf~~i~ 405 (452)
|+++.+++++..++.
T Consensus 179 a~~g~gl~~L~~~L~ 193 (356)
T PRK01889 179 ALDGEGLDVLAAWLS 193 (356)
T ss_pred CCCCccHHHHHHHhh
Confidence 999999999888874
No 496
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.50 E-value=0.00017 Score=63.01 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=30.9
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLL 150 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~ 150 (452)
++|+++|++|+|||||++++.+..+. ....++.+.++.....
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~ 44 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESI 44 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEE
Confidence 58999999999999999999988765 2334455555544333
No 497
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00055 Score=70.85 Aligned_cols=142 Identities=15% Similarity=0.183 Sum_probs=86.5
Q ss_pred CCCCCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhh
Q psy14768 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYY 313 (452)
Q Consensus 234 ~~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i 313 (452)
+.....++-++++|+||+|||||+..++. ++..+....+.- .+++ ..++.-.+.|..++. ...++ ....
T Consensus 63 p~d~PPPfIvavvGPpGtGKsTLirSlVr-r~tk~ti~~i~G-----PiTv--vsgK~RRiTflEcp~--Dl~~m-iDva 131 (1077)
T COG5192 63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVR-RFTKQTIDEIRG-----PITV--VSGKTRRITFLECPS--DLHQM-IDVA 131 (1077)
T ss_pred cccCCCCeEEEeecCCCCChhHHHHHHHH-HHHHhhhhccCC-----ceEE--eecceeEEEEEeChH--HHHHH-HhHH
Confidence 34455678899999999999999998874 222222221111 1111 156677788888882 23333 3345
Q ss_pred cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCCCcccHHHHH------HHHHHcCCCEE
Q psy14768 314 QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPDRQVEINEIE------AVCHQYNFMSW 386 (452)
Q Consensus 314 ~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~e~~~------~~~~~~~~~~~ 386 (452)
+-||.+||++|..-+...+.++. ++.+..+ +.| ++-|++..|+...+.....++ -|.+-+....+
T Consensus 132 KIaDLVlLlIdgnfGfEMETmEF-Lnil~~H-------GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKl 203 (1077)
T COG5192 132 KIADLVLLLIDGNFGFEMETMEF-LNILISH-------GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKL 203 (1077)
T ss_pred HhhheeEEEeccccCceehHHHH-HHHHhhc-------CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceE
Confidence 67899999999987755555543 4444443 245 667889999976333333332 24444444447
Q ss_pred EEecCCCC
Q psy14768 387 IEVSSKEH 394 (452)
Q Consensus 387 ~evSAktg 394 (452)
|++|...+
T Consensus 204 FylsgV~n 211 (1077)
T COG5192 204 FYLSGVEN 211 (1077)
T ss_pred EEeccccc
Confidence 88887653
No 498
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.50 E-value=0.00013 Score=80.78 Aligned_cols=75 Identities=16% Similarity=0.071 Sum_probs=48.5
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeeccccCCCCCCCCCCCC---------------------
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ--------------------- 167 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 167 (452)
++|++||.||||||||||++++.++.....++++++.....+.+........|+.+...
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~ 83 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILS 83 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhc
Confidence 68999999999999999999998776444466655555444444443333333333211
Q ss_pred CCceeEEEEcCCCCCc
Q psy14768 168 TPSYLILITGDSTVGK 183 (452)
Q Consensus 168 ~~~~~Il~vgD~~vGk 183 (452)
.....+++|.|+..+.
T Consensus 84 ~~aD~vI~VvDat~le 99 (772)
T PRK09554 84 GDADLLINVVDASNLE 99 (772)
T ss_pred cCCCEEEEEecCCcch
Confidence 1335678888876543
No 499
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.48 E-value=0.00018 Score=64.13 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=21.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhccC
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNKF 133 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~~ 133 (452)
.|+|||++|||||||+|++.+...
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~ 25 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP 25 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc
Confidence 389999999999999999997654
No 500
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.46 E-value=5.6e-05 Score=69.57 Aligned_cols=55 Identities=15% Similarity=0.279 Sum_probs=38.5
Q ss_pred cccEEEeeecccCCcceeeecccccc---------ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKF---------LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~---------~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~ 302 (452)
...++++|.+|||||||+|.+++... .....++++.+..... . +. .+.++||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~---~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIP--L---GN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEe--c---CC---CCEEEeCcCC
Confidence 46899999999999999999997432 3445556655543322 2 22 3679999994
Done!