Query psy14768
Match_columns 452
No_of_seqs 342 out of 2551
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 20:07:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14768.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14768hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 3.2E-36 1.1E-40 282.7 14.5 167 239-413 12-179 (216)
2 2hjg_A GTP-binding protein ENG 100.0 3.8E-34 1.3E-38 295.9 11.2 292 109-413 4-352 (436)
3 4dcu_A GTP-binding protein ENG 100.0 5.4E-33 1.8E-37 288.9 13.1 293 108-413 23-372 (456)
4 1mky_A Probable GTP-binding pr 100.0 1.4E-31 4.7E-36 276.9 14.9 291 109-412 2-357 (439)
5 2bcg_Y Protein YP2, GTP-bindin 100.0 1.6E-29 5.5E-34 233.7 20.2 169 239-415 7-176 (206)
6 1vg8_A RAS-related protein RAB 100.0 3.2E-29 1.1E-33 231.3 17.9 173 238-413 6-178 (207)
7 2bov_A RAla, RAS-related prote 100.0 1.2E-28 4.1E-33 227.0 17.4 167 238-412 12-179 (206)
8 2fu5_C RAS-related protein RAB 100.0 1.3E-28 4.3E-33 222.8 16.2 167 239-413 7-174 (183)
9 3tkl_A RAS-related protein RAB 100.0 5.6E-28 1.9E-32 220.7 18.9 169 238-414 14-183 (196)
10 3tw8_B RAS-related protein RAB 100.0 7.4E-28 2.5E-32 216.4 17.9 170 238-416 7-177 (181)
11 2hup_A RAS-related protein RAB 100.0 6E-28 2E-32 223.0 17.2 168 238-412 27-195 (201)
12 3cpj_B GTP-binding protein YPT 100.0 1.9E-28 6.6E-33 229.9 14.1 171 239-417 12-183 (223)
13 4dsu_A GTPase KRAS, isoform 2B 100.0 1.5E-27 5.2E-32 216.1 18.1 167 239-413 3-169 (189)
14 2bme_A RAB4A, RAS-related prot 100.0 1.3E-27 4.3E-32 216.6 17.0 168 238-413 8-176 (186)
15 2ew1_A RAS-related protein RAB 100.0 1.2E-27 4.2E-32 221.4 17.2 165 239-411 25-190 (201)
16 2a5j_A RAS-related protein RAB 100.0 1.3E-27 4.4E-32 218.4 16.6 167 238-412 19-186 (191)
17 2il1_A RAB12; G-protein, GDP, 100.0 1.3E-27 4.4E-32 218.9 16.2 166 238-410 24-190 (192)
18 2j0v_A RAC-like GTP-binding pr 100.0 4.6E-28 1.6E-32 224.9 13.1 167 239-414 8-184 (212)
19 1g16_A RAS-related protein SEC 100.0 1.6E-27 5.5E-32 212.0 15.8 164 240-411 3-166 (170)
20 1wms_A RAB-9, RAB9, RAS-relate 99.9 3.6E-27 1.2E-31 211.6 18.2 169 239-410 6-174 (177)
21 3cbq_A GTP-binding protein REM 99.9 2.3E-27 7.8E-32 218.3 17.1 168 238-412 21-190 (195)
22 3kkq_A RAS-related protein M-R 99.9 3.4E-27 1.2E-31 213.4 17.9 166 237-410 15-182 (183)
23 1z08_A RAS-related protein RAB 99.9 9.6E-28 3.3E-32 213.7 13.8 164 239-410 5-169 (170)
24 1z0f_A RAB14, member RAS oncog 99.9 2.3E-27 7.8E-32 212.9 16.2 164 239-410 14-178 (179)
25 3t5g_A GTP-binding protein RHE 99.9 2.8E-27 9.6E-32 213.5 16.5 166 239-412 5-171 (181)
26 3q3j_B RHO-related GTP-binding 99.9 2.1E-27 7.2E-32 221.7 15.9 167 238-413 25-206 (214)
27 2gf9_A RAS-related protein RAB 99.9 4E-27 1.4E-31 214.6 17.4 165 239-411 21-186 (189)
28 2efe_B Small GTP-binding prote 99.9 3.4E-27 1.2E-31 212.6 16.5 165 239-411 11-176 (181)
29 2g6b_A RAS-related protein RAB 99.9 4.3E-27 1.5E-31 211.7 17.0 167 238-412 8-176 (180)
30 3ihw_A Centg3; RAS, centaurin, 99.9 5.4E-27 1.8E-31 213.7 17.7 164 237-413 17-183 (184)
31 2oil_A CATX-8, RAS-related pro 99.9 4.2E-27 1.4E-31 215.0 16.9 167 238-412 23-190 (193)
32 3dz8_A RAS-related protein RAB 99.9 8.9E-28 3E-32 219.5 12.3 166 239-412 22-188 (191)
33 1zbd_A Rabphilin-3A; G protein 99.9 7.7E-27 2.6E-31 214.9 18.7 166 239-412 7-173 (203)
34 1r2q_A RAS-related protein RAB 99.9 4.1E-27 1.4E-31 209.2 16.0 162 239-408 5-167 (170)
35 1z0j_A RAB-22, RAS-related pro 99.9 6.4E-27 2.2E-31 208.2 17.1 162 239-408 5-167 (170)
36 2fn4_A P23, RAS-related protei 99.9 6.4E-27 2.2E-31 210.3 17.1 169 237-413 6-175 (181)
37 2o52_A RAS-related protein RAB 99.9 2.2E-27 7.4E-32 218.9 14.2 167 238-412 23-190 (200)
38 3q85_A GTP-binding protein REM 99.9 3.6E-27 1.2E-31 210.0 15.1 165 240-411 2-168 (169)
39 3reg_A RHO-like small GTPase; 99.9 6E-27 2.1E-31 214.3 16.7 167 238-413 21-191 (194)
40 1x3s_A RAS-related protein RAB 99.9 6.4E-27 2.2E-31 213.3 16.6 168 239-413 14-181 (195)
41 2hxs_A RAB-26, RAS-related pro 99.9 2.2E-27 7.6E-32 213.2 13.2 169 238-412 4-175 (178)
42 3oes_A GTPase rhebl1; small GT 99.9 3.4E-27 1.2E-31 217.5 14.7 169 238-414 22-191 (201)
43 1ky3_A GTP-binding protein YPT 99.9 5.2E-27 1.8E-31 211.1 15.3 172 238-412 6-180 (182)
44 1ek0_A Protein (GTP-binding pr 99.9 3.9E-27 1.3E-31 209.3 14.3 161 240-408 3-167 (170)
45 2iwr_A Centaurin gamma 1; ANK 99.9 1.1E-26 3.9E-31 209.0 17.5 166 238-414 5-173 (178)
46 3bc1_A RAS-related protein RAB 99.9 1.2E-26 4E-31 210.8 17.7 169 238-413 9-188 (195)
47 2fg5_A RAB-22B, RAS-related pr 99.9 4.1E-27 1.4E-31 215.4 14.7 165 238-410 21-186 (192)
48 2g3y_A GTP-binding protein GEM 99.9 6.4E-27 2.2E-31 218.5 16.1 167 238-411 35-204 (211)
49 3c5c_A RAS-like protein 12; GD 99.9 4.7E-27 1.6E-31 214.4 14.8 166 238-410 19-186 (187)
50 1z2a_A RAS-related protein RAB 99.9 4.5E-27 1.5E-31 208.7 14.1 163 239-410 4-167 (168)
51 2nzj_A GTP-binding protein REM 99.9 1.2E-26 4.1E-31 207.6 16.8 166 239-412 3-171 (175)
52 1c1y_A RAS-related protein RAP 99.9 9.3E-27 3.2E-31 206.5 15.8 163 240-409 3-166 (167)
53 2y8e_A RAB-protein 6, GH09086P 99.9 5.7E-27 2E-31 210.2 14.4 162 240-409 14-176 (179)
54 2yc2_C IFT27, small RAB-relate 99.9 9.9E-27 3.4E-31 214.2 15.9 169 239-415 19-197 (208)
55 1z06_A RAS-related protein RAB 99.9 1E-26 3.5E-31 211.9 15.7 164 239-409 19-187 (189)
56 1m7b_A RND3/RHOE small GTP-bin 99.9 1E-26 3.6E-31 211.1 15.5 164 238-410 5-183 (184)
57 3clv_A RAB5 protein, putative; 99.9 3E-26 1E-30 209.6 18.5 163 239-411 6-205 (208)
58 2q3h_A RAS homolog gene family 99.9 1.6E-26 5.3E-31 212.6 16.5 167 238-413 18-198 (201)
59 2f7s_A C25KG, RAS-related prot 99.9 5.6E-27 1.9E-31 218.3 13.6 169 238-413 23-202 (217)
60 3cph_A RAS-related protein SEC 99.9 2E-26 6.7E-31 213.5 16.9 165 239-411 19-183 (213)
61 3q72_A GTP-binding protein RAD 99.9 1.9E-26 6.5E-31 204.7 16.1 163 240-411 2-165 (166)
62 2p5s_A RAS and EF-hand domain 99.9 6E-27 2.1E-31 215.5 13.2 163 239-409 27-196 (199)
63 1u8z_A RAS-related protein RAL 99.9 2E-26 6.7E-31 204.1 16.0 164 239-410 3-167 (168)
64 1gwn_A RHO-related GTP-binding 99.9 1.6E-26 5.4E-31 214.5 15.9 164 238-410 26-204 (205)
65 2cjw_A GTP-binding protein GEM 99.9 2E-26 6.7E-31 211.5 16.2 168 239-413 5-175 (192)
66 1kao_A RAP2A; GTP-binding prot 99.9 2.4E-26 8.2E-31 203.3 16.0 163 240-410 3-166 (167)
67 2a9k_A RAS-related protein RAL 99.9 2.9E-26 1E-30 207.1 16.5 168 238-413 16-184 (187)
68 2atx_A Small GTP binding prote 99.9 2.8E-26 9.5E-31 209.7 16.5 163 239-410 17-193 (194)
69 2gf0_A GTP-binding protein DI- 99.9 9.6E-27 3.3E-31 213.0 13.2 167 238-411 6-172 (199)
70 3l0i_B RAS-related protein RAB 99.9 9E-28 3.1E-32 221.0 5.9 166 237-410 30-196 (199)
71 1mh1_A RAC1; GTP-binding, GTPa 99.9 3.2E-26 1.1E-30 206.9 14.5 164 239-411 4-181 (186)
72 2atv_A RERG, RAS-like estrogen 99.9 5.5E-26 1.9E-30 208.4 15.8 166 238-412 26-193 (196)
73 2j1l_A RHO-related GTP-binding 99.9 4.7E-26 1.6E-30 212.3 15.2 166 238-412 32-211 (214)
74 4djt_A GTP-binding nuclear pro 99.9 4.2E-26 1.4E-30 212.5 14.6 169 238-413 9-178 (218)
75 2gco_A H9, RHO-related GTP-bin 99.9 1.1E-25 3.8E-30 207.5 17.1 163 239-410 24-200 (201)
76 3con_A GTPase NRAS; structural 99.9 1.7E-25 5.8E-30 203.6 17.8 167 239-413 20-186 (190)
77 2ce2_X GTPase HRAS; signaling 99.9 2.9E-25 9.8E-30 195.9 17.9 163 240-410 3-165 (166)
78 4gzl_A RAS-related C3 botulinu 99.9 9E-26 3.1E-30 208.8 13.8 162 238-408 28-203 (204)
79 3bwd_D RAC-like GTP-binding pr 99.9 1.5E-26 5.3E-31 208.4 8.3 162 239-409 7-180 (182)
80 2fv8_A H6, RHO-related GTP-bin 99.9 1.9E-25 6.6E-30 206.8 15.4 165 239-412 24-202 (207)
81 3t1o_A Gliding protein MGLA; G 99.9 3.7E-26 1.2E-30 208.3 10.1 166 238-413 12-195 (198)
82 3gj0_A GTP-binding nuclear pro 99.9 8.4E-26 2.9E-30 211.3 12.1 167 237-413 12-178 (221)
83 2erx_A GTP-binding protein DI- 99.9 1.2E-25 4.1E-30 200.1 12.3 163 240-409 3-166 (172)
84 4bas_A ADP-ribosylation factor 99.9 8E-25 2.7E-29 200.2 15.7 168 237-413 14-192 (199)
85 2zej_A Dardarin, leucine-rich 99.9 2.3E-25 7.9E-30 202.5 8.3 168 240-412 2-180 (184)
86 1f6b_A SAR1; gtpases, N-termin 99.9 1.8E-24 6E-29 199.3 14.3 157 239-407 24-196 (198)
87 1r8s_A ADP-ribosylation factor 99.9 3.3E-25 1.1E-29 196.3 8.6 157 241-410 1-162 (164)
88 2h57_A ADP-ribosylation factor 99.9 3.4E-24 1.2E-28 195.3 15.3 162 238-410 19-187 (190)
89 1m2o_B GTP-binding protein SAR 99.9 4.7E-24 1.6E-28 195.0 14.4 158 238-407 21-189 (190)
90 1upt_A ARL1, ADP-ribosylation 99.9 1.8E-24 6.3E-29 192.6 11.1 159 239-410 6-169 (171)
91 2f9l_A RAB11B, member RAS onco 99.9 1.2E-23 4.2E-28 193.4 16.8 164 240-411 5-169 (199)
92 1zd9_A ADP-ribosylation factor 99.9 2.4E-24 8.3E-29 196.2 11.5 161 239-410 21-185 (188)
93 1ksh_A ARF-like protein 2; sma 99.9 8.5E-24 2.9E-28 191.6 15.0 160 239-411 17-181 (186)
94 1zj6_A ADP-ribosylation factor 99.9 7.8E-24 2.7E-28 192.4 14.4 160 239-411 15-179 (187)
95 1fzq_A ADP-ribosylation factor 99.9 6.5E-24 2.2E-28 192.5 13.2 160 238-410 14-178 (181)
96 3th5_A RAS-related C3 botulinu 99.8 7.6E-26 2.6E-30 208.8 0.0 162 238-408 28-203 (204)
97 2b6h_A ADP-ribosylation factor 99.9 1.7E-24 5.9E-29 198.3 8.6 159 238-409 27-190 (192)
98 2h17_A ADP-ribosylation factor 99.9 1.1E-23 3.8E-28 190.5 13.6 157 238-407 19-180 (181)
99 2wkq_A NPH1-1, RAS-related C3 99.9 1.7E-23 5.9E-28 206.9 16.1 163 239-410 154-330 (332)
100 1moz_A ARL1, ADP-ribosylation 99.9 1.2E-23 4.2E-28 189.7 13.8 161 239-411 17-181 (183)
101 1oix_A RAS-related protein RAB 99.9 4.3E-23 1.5E-27 188.9 15.9 162 239-408 28-190 (191)
102 2x77_A ADP-ribosylation factor 99.9 4.4E-24 1.5E-28 194.2 8.9 160 239-411 21-185 (189)
103 3llu_A RAS-related GTP-binding 99.9 5.1E-24 1.8E-28 195.5 9.4 162 237-408 17-195 (196)
104 2lkc_A Translation initiation 99.9 3.6E-23 1.2E-27 185.6 11.2 161 238-413 6-174 (178)
105 3c5h_A Glucocorticoid receptor 99.9 3.3E-24 1.1E-28 205.8 4.0 167 237-409 16-254 (255)
106 2qu8_A Putative nucleolar GTP- 99.9 2E-22 6.9E-27 189.5 15.3 171 233-414 22-209 (228)
107 2wji_A Ferrous iron transport 99.9 3.9E-23 1.4E-27 184.3 9.4 152 240-408 3-163 (165)
108 3r7w_A Gtpase1, GTP-binding pr 99.9 2E-22 7E-27 198.6 13.4 165 240-413 3-184 (307)
109 2fh5_B SR-beta, signal recogni 99.9 3.1E-22 1E-26 185.8 12.9 161 239-407 6-213 (214)
110 3o47_A ADP-ribosylation factor 99.9 2.4E-22 8.3E-27 199.9 11.6 161 239-411 164-328 (329)
111 3r7w_B Gtpase2, GTP-binding pr 99.9 1.2E-22 4.1E-27 200.0 6.2 163 242-420 1-184 (331)
112 3lvq_E ARF-GAP with SH3 domain 99.9 2.1E-22 7.2E-27 211.2 8.0 164 238-413 320-487 (497)
113 2cxx_A Probable GTP-binding pr 99.9 5E-22 1.7E-26 180.0 8.5 159 241-413 2-187 (190)
114 1svi_A GTP-binding protein YSX 99.9 2.6E-21 9E-26 176.3 11.9 156 239-408 22-193 (195)
115 2wjg_A FEOB, ferrous iron tran 99.9 8.4E-22 2.9E-26 178.6 8.4 157 239-412 6-171 (188)
116 2dyk_A GTP-binding protein; GT 99.8 1.2E-21 4E-26 172.5 8.8 151 241-408 2-160 (161)
117 2gj8_A MNME, tRNA modification 99.8 7E-22 2.4E-26 177.7 6.7 154 240-410 4-166 (172)
118 3iev_A GTP-binding protein ERA 99.8 7.5E-21 2.6E-25 187.4 13.7 162 238-410 8-182 (308)
119 3pqc_A Probable GTP-binding pr 99.8 1.1E-20 3.6E-25 171.7 12.4 157 238-409 21-193 (195)
120 3a1s_A Iron(II) transport prot 99.8 8.9E-21 3E-25 182.3 9.2 153 240-409 5-166 (258)
121 3dpu_A RAB family protein; roc 99.8 2.5E-21 8.6E-26 204.9 5.2 166 238-413 39-211 (535)
122 3iby_A Ferrous iron transport 99.8 5.9E-21 2E-25 183.3 5.3 151 241-407 2-164 (256)
123 4dhe_A Probable GTP-binding pr 99.8 3E-20 1E-24 173.2 9.6 161 239-411 28-212 (223)
124 3b1v_A Ferrous iron uptake tra 99.8 1.6E-20 5.4E-25 181.9 7.5 152 240-409 3-163 (272)
125 3i8s_A Ferrous iron transport 99.8 9.4E-21 3.2E-25 183.7 5.9 154 240-409 3-168 (274)
126 3gee_A MNME, tRNA modification 99.8 4.5E-20 1.6E-24 191.8 10.0 155 240-409 233-397 (476)
127 1wf3_A GTP-binding protein; GT 99.8 1.4E-19 4.9E-24 177.7 12.1 154 240-408 7-171 (301)
128 1mky_A Probable GTP-binding pr 99.8 1.6E-19 5.5E-24 186.5 11.2 154 241-410 2-166 (439)
129 3k53_A Ferrous iron transport 99.8 1.2E-19 4.1E-24 175.4 8.6 156 240-411 3-167 (271)
130 1xzp_A Probable tRNA modificat 99.8 2.5E-19 8.5E-24 186.4 11.1 153 240-410 243-405 (482)
131 1nrj_B SR-beta, signal recogni 99.8 6.1E-20 2.1E-24 170.7 3.2 146 238-396 10-170 (218)
132 2e87_A Hypothetical protein PH 99.8 6E-18 2E-22 170.0 17.5 163 238-412 165-338 (357)
133 3qq5_A Small GTP-binding prote 99.8 6.9E-19 2.4E-23 180.1 8.2 156 238-409 32-195 (423)
134 1lnz_A SPO0B-associated GTP-bi 99.8 8.8E-19 3E-23 174.8 8.3 162 241-411 159-331 (342)
135 2hjg_A GTP-binding protein ENG 99.7 2.4E-19 8.2E-24 185.0 3.0 152 241-409 4-164 (436)
136 3sjy_A Translation initiation 99.7 2E-17 6.8E-22 168.9 13.8 161 237-409 5-191 (403)
137 3cb4_D GTP-binding protein LEP 99.7 1.6E-17 5.4E-22 176.8 13.5 162 240-410 4-182 (599)
138 2qtf_A Protein HFLX, GTP-bindi 99.7 4E-17 1.4E-21 164.2 15.3 162 240-411 178-355 (364)
139 3j2k_7 ERF3, eukaryotic polype 99.7 1.8E-17 6.1E-22 171.1 12.7 152 238-402 15-217 (439)
140 1ega_A Protein (GTP-binding pr 99.7 1.3E-17 4.6E-22 163.6 10.9 155 240-408 8-173 (301)
141 1wb1_A Translation elongation 99.7 1.1E-17 3.7E-22 174.5 10.8 158 239-409 18-188 (482)
142 3geh_A MNME, tRNA modification 99.7 3.1E-18 1.1E-22 177.4 6.3 152 240-411 224-385 (462)
143 2ywe_A GTP-binding protein LEP 99.7 2.4E-17 8.1E-22 175.2 12.6 162 240-410 6-184 (600)
144 3izy_P Translation initiation 99.7 3.4E-19 1.1E-23 187.1 -2.1 159 239-409 3-167 (537)
145 1s0u_A EIF-2-gamma, translatio 99.7 6.4E-17 2.2E-21 165.4 13.4 161 239-409 7-197 (408)
146 3p26_A Elongation factor 1 alp 99.7 6E-18 2E-22 176.7 5.6 152 238-400 31-228 (483)
147 3lxx_A GTPase IMAP family memb 99.7 9.8E-17 3.3E-21 151.8 13.3 164 238-411 27-215 (239)
148 2xtp_A GTPase IMAP family memb 99.7 5.1E-17 1.7E-21 155.6 10.9 166 238-412 20-210 (260)
149 1kk1_A EIF2gamma; initiation o 99.7 8.8E-17 3E-21 164.5 12.3 162 238-409 8-199 (410)
150 3tr5_A RF-3, peptide chain rel 99.7 3.8E-17 1.3E-21 171.9 9.8 114 240-366 13-148 (528)
151 1d2e_A Elongation factor TU (E 99.7 4.8E-17 1.6E-21 165.8 8.9 156 240-408 3-193 (397)
152 2c78_A Elongation factor TU-A; 99.7 3E-17 1E-21 167.7 7.4 145 239-396 10-180 (405)
153 3t5d_A Septin-7; GTP-binding p 99.7 4.1E-17 1.4E-21 157.9 7.7 156 239-407 7-201 (274)
154 1jny_A EF-1-alpha, elongation 99.7 7.2E-18 2.5E-22 173.9 2.5 158 239-402 5-205 (435)
155 2ged_A SR-beta, signal recogni 99.7 2.3E-17 7.7E-22 150.0 5.1 117 238-366 46-170 (193)
156 2aka_B Dynamin-1; fusion prote 99.7 1E-17 3.5E-22 163.4 2.5 159 239-406 25-249 (299)
157 4dcu_A GTP-binding protein ENG 99.7 2.6E-17 9E-22 170.7 4.7 153 240-409 23-184 (456)
158 3lxw_A GTPase IMAP family memb 99.7 2.6E-16 9.1E-21 150.0 10.8 165 238-411 19-209 (247)
159 1u0l_A Probable GTPase ENGC; p 99.7 3.3E-16 1.1E-20 153.6 11.4 133 255-406 32-169 (301)
160 2qag_A Septin-2, protein NEDD5 99.7 1.8E-17 6.3E-22 166.7 2.3 159 240-411 37-234 (361)
161 1zun_B Sulfate adenylate trans 99.7 8.9E-17 3E-21 165.7 7.5 152 240-403 24-217 (434)
162 3ohm_A Guanine nucleotide-bind 99.6 1.4E-16 4.7E-21 157.4 8.3 135 269-413 151-321 (327)
163 1pui_A ENGB, probable GTP-bind 99.6 4.7E-16 1.6E-20 143.3 11.2 157 239-409 25-198 (210)
164 1f60_A Elongation factor EEF1A 99.6 6.1E-17 2.1E-21 167.9 5.5 149 239-400 6-202 (458)
165 1zo1_I IF2, translation initia 99.6 4.8E-18 1.6E-22 176.9 -3.1 155 239-406 3-163 (501)
166 1g7s_A Translation initiation 99.6 3.7E-16 1.2E-20 166.4 11.2 164 239-410 4-218 (594)
167 2elf_A Protein translation elo 99.6 3.7E-16 1.3E-20 157.6 10.5 147 242-411 23-181 (370)
168 1cip_A Protein (guanine nucleo 99.6 3.7E-16 1.3E-20 156.4 10.4 134 269-412 177-346 (353)
169 3izq_1 HBS1P, elongation facto 99.6 1.2E-16 4E-21 171.0 5.0 155 238-400 165-362 (611)
170 2xtz_A Guanine nucleotide-bind 99.6 1.4E-15 4.8E-20 152.1 11.8 120 290-412 181-347 (354)
171 1r5b_A Eukaryotic peptide chai 99.6 1.2E-16 4E-21 166.2 3.2 155 239-402 42-244 (467)
172 1azs_C GS-alpha; complex (lyas 99.6 2.5E-15 8.7E-20 152.2 12.8 133 271-413 203-388 (402)
173 3avx_A Elongation factor TS, e 99.6 1.4E-15 4.8E-20 169.3 10.9 158 238-408 294-484 (1289)
174 1zcb_A G alpha I/13; GTP-bindi 99.6 1.6E-15 5.3E-20 152.3 9.9 135 269-413 185-356 (362)
175 4fid_A G protein alpha subunit 99.6 2.1E-15 7.1E-20 149.6 8.9 132 269-410 145-328 (340)
176 3mca_A HBS1, elongation factor 99.6 8.6E-17 2.9E-21 171.6 -1.1 147 239-398 176-371 (592)
177 2dy1_A Elongation factor G; tr 99.6 6.2E-15 2.1E-19 159.4 11.5 113 240-365 9-139 (665)
178 3t34_A Dynamin-related protein 99.5 1.9E-15 6.5E-20 151.9 4.2 157 241-406 35-257 (360)
179 2h5e_A Peptide chain release f 99.5 3.4E-14 1.2E-18 149.5 12.1 114 240-366 13-148 (529)
180 1udx_A The GTP-binding protein 99.5 7.8E-14 2.7E-18 142.2 14.3 164 241-413 158-328 (416)
181 1dar_A EF-G, elongation factor 99.5 3.2E-14 1.1E-18 154.4 12.1 115 239-366 11-143 (691)
182 2j69_A Bacterial dynamin-like 99.5 1.3E-14 4.4E-19 157.7 8.5 165 239-413 68-328 (695)
183 3def_A T7I23.11 protein; chlor 99.5 3.2E-14 1.1E-18 136.5 9.6 121 238-366 34-165 (262)
184 1jwy_B Dynamin A GTPase domain 99.5 2.6E-14 9.1E-19 140.3 8.9 111 292-410 131-262 (315)
185 1wxq_A GTP-binding protein; st 99.5 1.3E-14 4.4E-19 147.5 6.1 157 241-402 1-262 (397)
186 2qnr_A Septin-2, protein NEDD5 99.5 1.3E-14 4.5E-19 142.3 5.8 158 240-410 18-214 (301)
187 2rdo_7 EF-G, elongation factor 99.5 1.7E-13 5.8E-18 148.9 14.3 120 239-366 9-148 (704)
188 2xex_A Elongation factor G; GT 99.5 9.5E-14 3.3E-18 150.7 12.2 114 240-366 10-141 (693)
189 2x2e_A Dynamin-1; nitration, h 99.5 8.6E-15 2.9E-19 146.8 1.8 159 239-406 30-254 (353)
190 1h65_A Chloroplast outer envel 99.4 1.9E-13 6.6E-18 131.6 9.8 120 239-366 38-168 (270)
191 2qag_C Septin-7; cell cycle, c 99.4 4.8E-14 1.6E-18 143.9 4.8 156 240-407 31-224 (418)
192 2wsm_A Hydrogenase expression/ 99.4 7.4E-14 2.5E-18 129.7 5.4 156 240-411 30-215 (221)
193 1jal_A YCHF protein; nucleotid 99.4 2.7E-12 9.2E-17 128.3 12.0 150 240-393 2-240 (363)
194 2hf9_A Probable hydrogenase ni 99.3 1.4E-14 4.8E-19 135.1 -5.4 155 239-410 37-224 (226)
195 1n0u_A EF-2, elongation factor 99.3 1.1E-12 3.6E-17 145.4 8.6 118 240-365 19-163 (842)
196 2dby_A GTP-binding protein; GD 99.3 2.9E-12 1E-16 128.7 9.3 167 241-408 2-260 (368)
197 2www_A Methylmalonic aciduria 99.3 3.5E-13 1.2E-17 134.8 0.4 105 291-410 166-279 (349)
198 3p32_A Probable GTPase RV1496/ 99.3 1.4E-12 4.7E-17 130.8 4.1 105 291-410 171-284 (355)
199 3vqt_A RF-3, peptide chain rel 99.3 1.4E-11 4.8E-16 130.1 11.6 113 241-366 32-166 (548)
200 2qpt_A EH domain-containing pr 99.2 3.5E-12 1.2E-16 134.9 5.8 121 239-366 64-232 (550)
201 2p67_A LAO/AO transport system 99.2 7.9E-12 2.7E-16 124.5 4.2 104 291-409 148-260 (341)
202 2yv5_A YJEQ protein; hydrolase 99.2 4E-11 1.4E-15 117.4 9.0 96 302-405 66-164 (302)
203 3zvr_A Dynamin-1; hydrolase, D 99.2 1.4E-11 4.7E-16 133.5 5.8 159 238-407 49-275 (772)
204 4a9a_A Ribosome-interacting GT 99.2 1E-10 3.6E-15 117.4 11.2 135 240-383 72-222 (376)
205 1yrb_A ATP(GTP)binding protein 99.2 3.3E-11 1.1E-15 114.8 7.2 112 292-409 109-256 (262)
206 3j25_A Tetracycline resistance 99.1 1.9E-11 6.4E-16 131.6 3.8 112 242-366 4-133 (638)
207 4fn5_A EF-G 1, elongation fact 99.0 1.5E-09 5.1E-14 118.2 13.6 117 241-365 14-150 (709)
208 2qm8_A GTPase/ATPase; G protei 99.0 5E-10 1.7E-14 111.3 6.7 104 291-409 147-260 (337)
209 3l82_B F-box only protein 4; T 98.8 1.6E-09 5.4E-14 99.2 4.6 110 298-410 108-223 (227)
210 2ohf_A Protein OLA1, GTP-bindi 98.8 1.2E-09 4.2E-14 110.2 3.8 88 239-329 21-130 (396)
211 4dkx_A RAS-related protein RAB 98.8 3.3E-09 1.1E-13 98.7 5.0 44 106-149 11-54 (216)
212 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 5.7E-08 2E-12 98.1 11.0 85 240-327 20-127 (392)
213 3h2y_A GTPase family protein; 98.7 4.4E-08 1.5E-12 98.4 10.0 98 301-408 55-158 (368)
214 3l2o_B F-box only protein 4; s 98.6 1.1E-08 3.9E-13 97.9 3.9 108 298-410 193-308 (312)
215 3ec1_A YQEH GTPase; atnos1, at 98.6 1E-07 3.6E-12 95.7 8.6 98 301-408 57-160 (369)
216 3ihw_A Centg3; RAS, centaurin, 98.4 1.1E-07 3.6E-12 85.6 4.3 37 106-142 18-54 (184)
217 2hup_A RAS-related protein RAB 98.4 1.3E-07 4.3E-12 86.3 4.1 48 105-152 26-73 (201)
218 2a5j_A RAS-related protein RAB 98.4 3.8E-07 1.3E-11 82.0 6.7 47 106-152 19-65 (191)
219 2hxs_A RAB-26, RAS-related pro 98.3 2.1E-07 7.1E-12 82.2 3.7 46 107-152 5-50 (178)
220 2oil_A CATX-8, RAS-related pro 98.3 5.5E-07 1.9E-11 80.9 6.1 48 104-151 21-68 (193)
221 4bas_A ADP-ribosylation factor 98.3 3.1E-07 1E-11 82.7 4.3 41 106-146 15-56 (199)
222 3cpj_B GTP-binding protein YPT 98.3 5.9E-07 2E-11 83.1 6.2 48 105-152 10-57 (223)
223 2bcg_Y Protein YP2, GTP-bindin 98.3 8.4E-07 2.9E-11 80.7 6.8 48 105-152 5-52 (206)
224 2j37_W Signal recognition part 98.3 2.3E-07 8E-12 96.5 3.4 155 239-407 100-310 (504)
225 3ec1_A YQEH GTPase; atnos1, at 98.3 2.8E-08 9.7E-13 99.8 -3.6 136 240-392 162-313 (369)
226 3tw8_B RAS-related protein RAB 98.3 3E-07 1E-11 81.2 3.4 48 105-152 6-53 (181)
227 2gf9_A RAS-related protein RAB 98.3 8.6E-07 2.9E-11 79.4 6.4 46 106-151 20-65 (189)
228 3dz8_A RAS-related protein RAB 98.3 2.6E-07 8.7E-12 83.2 2.8 48 104-151 19-66 (191)
229 2lkc_A Translation initiation 98.3 1.4E-06 4.7E-11 76.8 7.0 45 108-152 8-52 (178)
230 3clv_A RAB5 protein, putative; 98.3 5.5E-07 1.9E-11 80.9 4.5 47 107-153 6-52 (208)
231 2ew1_A RAS-related protein RAB 98.3 9.4E-07 3.2E-11 80.7 6.0 47 105-151 23-69 (201)
232 2h57_A ADP-ribosylation factor 98.3 5.7E-07 2E-11 80.7 4.5 39 107-145 20-59 (190)
233 2wji_A Ferrous iron transport 98.2 9.3E-07 3.2E-11 77.6 5.7 44 108-151 3-46 (165)
234 3tkl_A RAS-related protein RAB 98.2 6.3E-07 2.2E-11 80.4 4.7 48 105-152 13-60 (196)
235 2il1_A RAB12; G-protein, GDP, 98.2 6.8E-07 2.3E-11 80.6 4.9 46 106-151 24-69 (192)
236 3cph_A RAS-related protein SEC 98.2 8E-07 2.7E-11 81.0 5.4 47 106-152 18-64 (213)
237 1z0f_A RAB14, member RAS oncog 98.2 1.4E-06 4.7E-11 76.7 6.5 48 104-151 11-58 (179)
238 2bme_A RAB4A, RAS-related prot 98.2 9.4E-07 3.2E-11 78.6 5.3 48 105-152 7-54 (186)
239 1puj_A YLQF, conserved hypothe 98.2 2E-06 6.8E-11 83.1 7.9 99 298-410 5-106 (282)
240 1oix_A RAS-related protein RAB 98.2 1.3E-06 4.5E-11 78.8 6.2 47 105-151 26-72 (191)
241 3q3j_B RHO-related GTP-binding 98.2 5.8E-07 2E-11 82.8 3.7 41 106-146 25-65 (214)
242 2fu5_C RAS-related protein RAB 98.2 2.9E-07 9.8E-12 81.9 1.5 46 106-151 6-51 (183)
243 2o52_A RAS-related protein RAB 98.2 6.4E-07 2.2E-11 81.4 3.7 47 105-151 22-68 (200)
244 1ky3_A GTP-binding protein YPT 98.2 1.2E-06 4.2E-11 77.2 5.4 47 106-152 6-52 (182)
245 2p5s_A RAS and EF-hand domain 98.2 6.7E-07 2.3E-11 81.0 3.7 46 106-151 26-71 (199)
246 4a9a_A Ribosome-interacting GT 98.2 2.2E-06 7.4E-11 86.0 7.4 51 351-408 248-298 (376)
247 1z2a_A RAS-related protein RAB 98.2 2.1E-06 7.3E-11 74.6 6.4 46 106-151 3-48 (168)
248 3l0i_B RAS-related protein RAB 98.2 4.6E-07 1.6E-11 82.1 2.0 47 106-152 31-77 (199)
249 2qag_B Septin-6, protein NEDD5 98.1 1.4E-06 4.8E-11 88.6 5.3 114 241-366 43-190 (427)
250 2q3h_A RAS homolog gene family 98.1 9.7E-07 3.3E-11 79.8 3.7 41 106-146 18-58 (201)
251 3c5c_A RAS-like protein 12; GD 98.1 1.7E-06 5.8E-11 77.7 5.2 41 106-146 19-59 (187)
252 2gco_A H9, RHO-related GTP-bin 98.1 2.6E-06 8.9E-11 77.2 6.5 41 107-147 24-64 (201)
253 2h17_A ADP-ribosylation factor 98.1 6.7E-07 2.3E-11 79.6 2.5 39 108-147 21-59 (181)
254 2cjw_A GTP-binding protein GEM 98.1 2E-06 6.8E-11 77.7 5.4 44 107-150 5-49 (192)
255 1z06_A RAS-related protein RAB 98.1 2.9E-06 9.9E-11 75.9 6.3 45 107-151 19-63 (189)
256 2g3y_A GTP-binding protein GEM 98.1 2.5E-06 8.6E-11 78.7 6.0 45 106-150 35-80 (211)
257 1wms_A RAB-9, RAB9, RAS-relate 98.1 2.4E-06 8.2E-11 75.2 5.6 46 106-151 5-50 (177)
258 1g16_A RAS-related protein SEC 98.1 2.4E-06 8.3E-11 74.4 5.6 45 107-151 2-46 (170)
259 1z08_A RAS-related protein RAB 98.1 2.8E-06 9.7E-11 74.1 6.0 46 106-151 4-49 (170)
260 3h2y_A GTPase family protein; 98.1 2.7E-07 9.2E-12 92.6 -1.2 129 240-384 160-305 (368)
261 1x3s_A RAS-related protein RAB 98.1 3.3E-06 1.1E-10 75.5 6.0 47 105-151 12-58 (195)
262 2gj8_A MNME, tRNA modification 98.1 3.3E-06 1.1E-10 74.7 5.9 44 109-152 5-49 (172)
263 3bc1_A RAS-related protein RAB 98.1 3.9E-06 1.3E-10 74.7 6.3 42 105-146 8-49 (195)
264 1zd9_A ADP-ribosylation factor 98.1 2.6E-06 8.9E-11 76.3 5.2 42 106-147 20-61 (188)
265 1wf3_A GTP-binding protein; GT 98.1 4.8E-06 1.6E-10 81.1 7.4 80 107-186 6-103 (301)
266 1zbd_A Rabphilin-3A; G protein 98.1 3.8E-06 1.3E-10 76.0 6.3 47 105-151 5-51 (203)
267 3t5g_A GTP-binding protein RHE 98.1 3.3E-06 1.1E-10 74.7 5.7 39 107-145 5-43 (181)
268 2efe_B Small GTP-binding prote 98.1 4.1E-06 1.4E-10 73.9 6.3 47 105-151 9-55 (181)
269 2fn4_A P23, RAS-related protei 98.1 3.7E-06 1.3E-10 74.1 5.9 41 106-146 7-47 (181)
270 2fg5_A RAB-22B, RAS-related pr 98.1 3.4E-06 1.2E-10 75.8 5.8 48 104-151 19-66 (192)
271 1r8s_A ADP-ribosylation factor 98.1 2.5E-06 8.7E-11 74.0 4.8 35 109-144 1-35 (164)
272 2j0v_A RAC-like GTP-binding pr 98.1 4.3E-06 1.5E-10 76.2 6.5 40 107-146 8-47 (212)
273 2f7s_A C25KG, RAS-related prot 98.1 2.1E-06 7.3E-11 78.6 4.3 47 105-151 22-68 (217)
274 3b1v_A Ferrous iron uptake tra 98.1 3.3E-06 1.1E-10 81.1 5.8 43 108-150 3-45 (272)
275 3a1s_A Iron(II) transport prot 98.1 2E-06 6.8E-11 81.9 4.1 46 107-152 4-49 (258)
276 2f9l_A RAB11B, member RAS onco 98.1 3.8E-06 1.3E-10 76.0 5.8 46 106-151 3-48 (199)
277 2wjg_A FEOB, ferrous iron tran 98.1 2.8E-06 9.5E-11 75.7 4.7 45 108-152 7-51 (188)
278 2zej_A Dardarin, leucine-rich 98.1 1.8E-06 6.1E-11 77.2 3.4 41 109-149 3-45 (184)
279 1z0j_A RAB-22, RAS-related pro 98.1 4.6E-06 1.6E-10 72.6 6.0 46 106-151 4-49 (170)
280 2atx_A Small GTP binding prote 98.1 5.1E-06 1.7E-10 74.5 6.4 41 106-146 16-56 (194)
281 2g6b_A RAS-related protein RAB 98.0 5.5E-06 1.9E-10 73.0 6.4 47 104-150 6-53 (180)
282 1gwn_A RHO-related GTP-binding 98.0 3.3E-06 1.1E-10 77.2 5.0 41 106-146 26-66 (205)
283 3i8s_A Ferrous iron transport 98.0 2E-06 6.8E-11 82.6 3.6 47 108-154 3-49 (274)
284 1r2q_A RAS-related protein RAB 98.0 4.7E-06 1.6E-10 72.5 5.8 46 106-151 4-49 (170)
285 3cbq_A GTP-binding protein REM 98.0 2.9E-06 1E-10 76.8 4.6 45 106-150 21-65 (195)
286 1zj6_A ADP-ribosylation factor 98.0 2.6E-06 8.8E-11 76.1 4.1 38 108-146 16-53 (187)
287 1ek0_A Protein (GTP-binding pr 98.0 4.8E-06 1.6E-10 72.4 5.7 44 108-151 3-46 (170)
288 3llu_A RAS-related GTP-binding 98.0 2.1E-06 7.2E-11 77.6 3.4 41 106-149 18-58 (196)
289 2y8e_A RAB-protein 6, GH09086P 98.0 5E-06 1.7E-10 73.0 5.7 45 107-151 13-57 (179)
290 1vg8_A RAS-related protein RAB 98.0 5E-06 1.7E-10 75.3 5.8 46 106-151 6-51 (207)
291 2dyk_A GTP-binding protein; GT 98.0 3.6E-06 1.2E-10 72.7 4.6 43 109-151 2-45 (161)
292 3oes_A GTPase rhebl1; small GT 98.0 3.7E-06 1.3E-10 76.1 4.8 39 107-145 23-61 (201)
293 2atv_A RERG, RAS-like estrogen 98.0 3E-06 1E-10 76.3 4.1 39 108-146 28-66 (196)
294 1mh1_A RAC1; GTP-binding, GTPa 98.0 4.4E-06 1.5E-10 73.9 5.1 40 107-146 4-43 (186)
295 4djt_A GTP-binding nuclear pro 98.0 1.4E-06 4.9E-11 79.8 1.7 45 106-150 9-53 (218)
296 3iby_A Ferrous iron transport 98.0 2.3E-06 7.8E-11 81.4 3.0 46 109-154 2-47 (256)
297 3kkq_A RAS-related protein M-R 98.0 7.1E-06 2.4E-10 72.7 6.0 40 106-145 16-55 (183)
298 3bwd_D RAC-like GTP-binding pr 98.0 4.5E-06 1.5E-10 73.7 4.5 39 108-146 8-46 (182)
299 1m7b_A RND3/RHOE small GTP-bin 98.0 5.5E-06 1.9E-10 73.8 5.0 41 106-146 5-45 (184)
300 2b6h_A ADP-ribosylation factor 98.0 3.1E-06 1.1E-10 76.3 3.3 36 108-144 29-64 (192)
301 3k53_A Ferrous iron transport 98.0 3.2E-06 1.1E-10 80.9 3.4 49 108-156 3-51 (271)
302 1fzq_A ADP-ribosylation factor 98.0 3.6E-06 1.2E-10 75.0 3.4 37 107-144 15-51 (181)
303 3lvq_E ARF-GAP with SH3 domain 97.9 5.5E-06 1.9E-10 86.2 5.1 43 106-149 320-362 (497)
304 3reg_A RHO-like small GTPase; 97.9 7.5E-06 2.6E-10 73.5 5.3 42 106-147 21-62 (194)
305 2yc2_C IFT27, small RAB-relate 97.9 2.2E-06 7.4E-11 77.6 1.6 47 107-153 19-67 (208)
306 3lxw_A GTPase IMAP family memb 97.9 8.4E-06 2.9E-10 77.0 5.7 29 107-135 20-48 (247)
307 2fv8_A H6, RHO-related GTP-bin 97.9 6.8E-06 2.3E-10 74.8 4.9 40 108-147 25-64 (207)
308 2iwr_A Centaurin gamma 1; ANK 97.9 6.8E-06 2.3E-10 72.5 4.7 37 108-145 7-43 (178)
309 1tq4_A IIGP1, interferon-induc 97.9 2.3E-05 7.9E-10 79.5 9.1 162 240-413 69-256 (413)
310 1upt_A ARL1, ADP-ribosylation 97.9 7.9E-06 2.7E-10 71.3 4.8 37 108-145 7-43 (171)
311 1ksh_A ARF-like protein 2; sma 97.9 8.7E-06 3E-10 72.4 5.2 37 108-145 18-54 (186)
312 3t1o_A Gliding protein MGLA; G 97.9 3.5E-06 1.2E-10 75.3 2.5 42 106-148 12-64 (198)
313 2nzj_A GTP-binding protein REM 97.9 1.2E-05 4.2E-10 70.3 5.6 43 107-150 3-45 (175)
314 1m2o_B GTP-binding protein SAR 97.9 9.2E-06 3.1E-10 73.0 4.8 38 108-146 23-60 (190)
315 2qu8_A Putative nucleolar GTP- 97.9 8.6E-06 3E-10 75.4 4.8 38 108-145 29-66 (228)
316 1c1y_A RAS-related protein RAP 97.9 1.1E-05 3.8E-10 69.9 5.1 39 108-146 3-41 (167)
317 2xtp_A GTPase IMAP family memb 97.9 8.6E-06 2.9E-10 77.1 4.7 46 108-153 22-69 (260)
318 2a9k_A RAS-related protein RAL 97.9 1.2E-05 4E-10 71.2 5.3 41 106-146 16-56 (187)
319 3sop_A Neuronal-specific septi 97.9 8.8E-06 3E-10 78.0 4.7 133 240-384 2-175 (270)
320 1moz_A ARL1, ADP-ribosylation 97.9 1E-05 3.6E-10 71.5 4.9 38 108-146 18-55 (183)
321 2cxx_A Probable GTP-binding pr 97.9 1.2E-05 4E-10 71.5 5.1 39 108-146 1-39 (190)
322 3t5d_A Septin-7; GTP-binding p 97.9 1.2E-05 4E-10 77.1 5.4 47 106-152 6-60 (274)
323 3gj0_A GTP-binding nuclear pro 97.8 7.2E-06 2.4E-10 75.4 3.6 46 106-151 13-58 (221)
324 3q85_A GTP-binding protein REM 97.8 1.2E-05 4.2E-10 70.0 4.9 44 108-151 2-45 (169)
325 1f6b_A SAR1; gtpases, N-termin 97.8 7.4E-06 2.5E-10 74.2 3.5 39 108-147 25-63 (198)
326 3geh_A MNME, tRNA modification 97.8 7.1E-06 2.4E-10 84.6 3.8 78 109-186 225-320 (462)
327 3gee_A MNME, tRNA modification 97.8 7.6E-06 2.6E-10 84.7 4.0 76 109-184 234-327 (476)
328 2x77_A ADP-ribosylation factor 97.8 7.8E-06 2.7E-10 73.0 3.4 37 108-145 22-58 (189)
329 3lxx_A GTPase IMAP family memb 97.8 1.1E-05 3.7E-10 75.4 4.5 47 106-152 27-75 (239)
330 1svi_A GTP-binding protein YSX 97.8 9.6E-06 3.3E-10 72.6 3.9 40 108-147 23-62 (195)
331 2gf0_A GTP-binding protein DI- 97.8 1.5E-05 5E-10 71.6 5.0 38 108-145 8-45 (199)
332 2erx_A GTP-binding protein DI- 97.8 1.7E-05 5.9E-10 68.9 5.2 39 108-146 3-41 (172)
333 2bov_A RAla, RAS-related prote 97.8 1.9E-05 6.5E-10 71.2 5.4 40 106-145 12-51 (206)
334 1kao_A RAP2A; GTP-binding prot 97.8 1.9E-05 6.6E-10 68.1 5.2 38 108-145 3-40 (167)
335 4dhe_A Probable GTP-binding pr 97.8 1.6E-05 5.5E-10 72.9 4.8 26 108-133 29-54 (223)
336 3con_A GTPase NRAS; structural 97.8 1.8E-05 6E-10 70.6 4.9 39 107-145 20-58 (190)
337 1u8z_A RAS-related protein RAL 97.8 2.3E-05 7.8E-10 67.7 5.3 39 108-146 4-42 (168)
338 3iev_A GTP-binding protein ERA 97.8 3.3E-05 1.1E-09 75.4 7.0 77 109-185 11-108 (308)
339 3dpu_A RAB family protein; roc 97.7 1.9E-05 6.5E-10 83.0 5.0 43 106-148 39-81 (535)
340 3c5h_A Glucocorticoid receptor 97.7 1.6E-05 5.4E-10 75.3 3.9 42 106-147 17-71 (255)
341 3r7w_A Gtpase1, GTP-binding pr 97.7 1.3E-05 4.4E-10 78.2 2.9 42 108-149 3-47 (307)
342 4gzl_A RAS-related C3 botulinu 97.7 2.9E-05 1E-09 70.5 4.7 37 108-144 30-66 (204)
343 1xzp_A Probable tRNA modificat 97.7 8.1E-06 2.8E-10 84.6 1.0 56 109-164 244-300 (482)
344 2fh5_B SR-beta, signal recogni 97.7 2.1E-05 7.3E-10 71.6 3.5 40 107-147 6-45 (214)
345 4dsu_A GTPase KRAS, isoform 2B 97.7 4.4E-05 1.5E-09 67.6 5.4 35 108-142 4-38 (189)
346 3th5_A RAS-related C3 botulinu 96.8 6.8E-06 2.3E-10 74.5 0.0 40 107-146 29-68 (204)
347 3cnl_A YLQF, putative uncharac 97.6 3.3E-05 1.1E-09 73.6 4.7 85 308-407 14-98 (262)
348 2ce2_X GTPase HRAS; signaling 97.6 4E-05 1.4E-09 65.9 4.8 38 108-145 3-40 (166)
349 2j1l_A RHO-related GTP-binding 97.6 3.1E-05 1.1E-09 70.9 4.2 39 107-145 33-71 (214)
350 2ged_A SR-beta, signal recogni 97.6 3.9E-05 1.3E-09 68.5 4.6 38 108-145 48-88 (193)
351 3o47_A ADP-ribosylation factor 97.6 2.7E-05 9.1E-10 76.8 3.6 40 107-147 164-203 (329)
352 3q72_A GTP-binding protein RAD 97.5 3.9E-05 1.3E-09 66.5 3.2 37 108-145 2-38 (166)
353 2v3c_C SRP54, signal recogniti 97.5 7.7E-05 2.6E-09 76.2 5.7 81 290-384 179-267 (432)
354 1nrj_B SR-beta, signal recogni 97.5 5.5E-05 1.9E-09 69.1 4.2 39 107-145 11-52 (218)
355 1ega_A Protein (GTP-binding pr 97.5 9.9E-05 3.4E-09 71.7 6.2 27 108-134 8-34 (301)
356 1t9h_A YLOQ, probable GTPase E 97.5 5.3E-05 1.8E-09 73.8 3.5 89 307-403 78-170 (307)
357 1f5n_A Interferon-induced guan 97.4 5E-05 1.7E-09 80.4 2.8 96 238-336 36-141 (592)
358 1puj_A YLQF, conserved hypothe 97.4 2.2E-05 7.6E-10 75.7 -0.1 57 239-303 119-176 (282)
359 3dm5_A SRP54, signal recogniti 97.4 9.1E-05 3.1E-09 75.6 4.3 90 292-397 183-278 (443)
360 2hf9_A Probable hydrogenase ni 97.4 5.8E-05 2E-09 69.4 2.6 38 108-145 38-75 (226)
361 3def_A T7I23.11 protein; chlor 97.4 0.00012 4.1E-09 69.5 4.8 57 108-164 36-93 (262)
362 3p26_A Elongation factor 1 alp 97.4 5.6E-05 1.9E-09 78.4 2.4 76 107-182 32-147 (483)
363 3j2k_7 ERF3, eukaryotic polype 97.3 0.00016 5.4E-09 74.1 5.5 78 107-184 16-133 (439)
364 3pqc_A Probable GTP-binding pr 97.3 0.00023 7.7E-09 63.2 5.8 37 108-145 23-59 (195)
365 1jal_A YCHF protein; nucleotid 97.2 0.00014 4.8E-09 72.4 3.7 26 109-134 3-28 (363)
366 1h65_A Chloroplast outer envel 97.2 0.00024 8.1E-09 67.7 4.8 27 108-134 39-65 (270)
367 1j8m_F SRP54, signal recogniti 97.2 0.0003 1E-08 68.2 5.6 93 290-399 179-280 (297)
368 2wkq_A NPH1-1, RAS-related C3 97.2 0.00023 7.9E-09 69.1 4.8 38 108-145 155-192 (332)
369 2rcn_A Probable GTPase ENGC; Y 97.2 0.0011 3.7E-08 65.8 9.6 84 311-403 126-212 (358)
370 3cnl_A YLQF, putative uncharac 97.2 3.3E-05 1.1E-09 73.7 -1.4 56 241-304 100-156 (262)
371 3izy_P Translation initiation 97.2 0.00011 3.7E-09 77.0 2.4 78 109-186 5-92 (537)
372 3r7w_B Gtpase2, GTP-binding pr 97.2 0.00018 6.3E-09 70.5 3.4 38 110-147 1-41 (331)
373 3izq_1 HBS1P, elongation facto 97.2 0.00021 7.2E-09 76.2 4.2 27 107-133 166-192 (611)
374 1pui_A ENGB, probable GTP-bind 97.1 0.00019 6.4E-09 65.0 3.2 38 109-146 27-64 (210)
375 2qtf_A Protein HFLX, GTP-bindi 97.1 0.00018 6.1E-09 71.8 3.2 42 110-151 181-222 (364)
376 3qq5_A Small GTP-binding prote 97.1 0.00018 6E-09 73.3 3.0 46 107-152 33-79 (423)
377 1wxq_A GTP-binding protein; st 97.1 0.00049 1.7E-08 69.5 6.0 25 109-133 1-25 (397)
378 2e87_A Hypothetical protein PH 97.0 0.0004 1.4E-08 69.0 4.6 27 108-134 167-193 (357)
379 2aka_B Dynamin-1; fusion prote 97.0 0.0003 1E-08 67.5 3.3 28 107-134 25-52 (299)
380 3mca_A HBS1, elongation factor 96.8 0.00039 1.3E-08 73.9 2.1 25 106-130 175-199 (592)
381 2ohf_A Protein OLA1, GTP-bindi 96.8 0.00061 2.1E-08 68.5 3.4 38 109-146 23-60 (396)
382 3kl4_A SRP54, signal recogniti 96.7 0.00018 6E-09 73.4 -0.9 91 291-397 179-277 (433)
383 1wb1_A Translation elongation 96.7 0.0012 4E-08 68.4 5.0 78 107-184 18-111 (482)
384 2x2e_A Dynamin-1; nitration, h 96.6 0.001 3.6E-08 65.8 3.9 28 107-134 30-57 (353)
385 2qag_A Septin-2, protein NEDD5 96.6 0.00066 2.3E-08 67.6 2.2 31 107-137 36-67 (361)
386 1zo1_I IF2, translation initia 96.5 0.0015 5.3E-08 67.7 4.3 76 109-184 5-89 (501)
387 1jwy_B Dynamin A GTPase domain 96.5 0.0013 4.3E-08 63.7 3.2 27 107-133 23-49 (315)
388 2wsm_A Hydrogenase expression/ 96.4 0.0015 5.2E-08 59.5 3.1 27 108-134 30-56 (221)
389 1f60_A Elongation factor EEF1A 96.4 0.00085 2.9E-08 69.0 1.5 25 107-131 6-30 (458)
390 1jny_A EF-1-alpha, elongation 96.4 0.0021 7.2E-08 65.6 4.4 76 107-182 5-120 (435)
391 1ni3_A YCHF GTPase, YCHF GTP-b 96.4 0.0028 9.7E-08 63.7 5.2 38 109-146 21-59 (392)
392 1bif_A 6-phosphofructo-2-kinas 96.4 0.00019 6.6E-09 74.1 -3.6 101 239-344 38-148 (469)
393 1zun_B Sulfate adenylate trans 96.3 0.0029 9.8E-08 64.5 4.9 26 107-132 23-48 (434)
394 3tr5_A RF-3, peptide chain rel 96.3 0.0014 4.8E-08 68.6 2.3 81 107-187 12-123 (528)
395 3t34_A Dynamin-related protein 96.3 0.0039 1.3E-07 61.8 5.4 35 107-141 33-67 (360)
396 2qnr_A Septin-2, protein NEDD5 96.2 0.0025 8.5E-08 61.8 3.6 31 106-136 16-47 (301)
397 3szr_A Interferon-induced GTP- 96.2 0.0033 1.1E-07 66.9 4.6 23 241-263 46-68 (608)
398 3e70_C DPA, signal recognition 96.1 0.0023 7.8E-08 62.8 3.0 92 292-399 212-309 (328)
399 2c78_A Elongation factor TU-A; 96.1 0.0035 1.2E-07 63.2 4.4 79 107-185 10-114 (405)
400 1r5b_A Eukaryotic peptide chai 96.1 0.0054 1.9E-07 63.1 5.8 24 107-130 42-65 (467)
401 2qag_C Septin-7; cell cycle, c 96.1 0.0049 1.7E-07 62.5 5.2 29 106-134 29-57 (418)
402 1lnz_A SPO0B-associated GTP-bi 95.9 0.003 1E-07 62.3 2.8 26 109-134 159-184 (342)
403 2dby_A GTP-binding protein; GD 95.9 0.0038 1.3E-07 62.2 3.3 24 109-132 2-25 (368)
404 2h5e_A Peptide chain release f 95.9 0.0069 2.4E-07 63.3 5.4 79 107-185 12-121 (529)
405 1f5n_A Interferon-induced guan 95.7 0.0068 2.3E-07 64.0 4.6 26 108-133 38-63 (592)
406 2elf_A Protein translation elo 95.7 0.0059 2E-07 60.9 4.0 66 110-184 23-97 (370)
407 2j69_A Bacterial dynamin-like 95.7 0.0064 2.2E-07 65.7 4.5 27 108-134 69-95 (695)
408 2qpt_A EH domain-containing pr 95.7 0.0072 2.4E-07 63.5 4.6 28 107-134 64-91 (550)
409 2xex_A Elongation factor G; GT 95.6 0.011 3.7E-07 63.9 5.5 81 106-186 8-115 (693)
410 3q5d_A Atlastin-1; G protein, 95.5 0.016 5.6E-07 59.0 6.5 23 240-262 67-89 (447)
411 1d2e_A Elongation factor TU (E 95.5 0.0061 2.1E-07 61.3 3.1 24 108-131 3-26 (397)
412 2www_A Methylmalonic aciduria 95.4 0.0074 2.5E-07 59.7 3.4 23 109-131 75-97 (349)
413 1dar_A EF-G, elongation factor 95.1 0.016 5.5E-07 62.6 5.0 79 106-186 10-117 (691)
414 1g7s_A Translation initiation 95.0 0.033 1.1E-06 59.0 7.0 27 108-134 5-31 (594)
415 1n0u_A EF-2, elongation factor 95.0 0.016 5.5E-07 64.0 4.6 26 106-131 17-42 (842)
416 1s0u_A EIF-2-gamma, translatio 94.9 0.02 6.8E-07 57.7 4.7 40 107-146 7-51 (408)
417 2xxa_A Signal recognition part 94.7 0.012 4E-07 60.0 2.5 80 291-384 183-269 (433)
418 3sop_A Neuronal-specific septi 94.7 0.016 5.6E-07 55.0 3.3 27 108-134 2-28 (270)
419 3sjy_A Translation initiation 94.7 0.02 6.8E-07 57.6 4.1 25 108-132 8-32 (403)
420 1kk1_A EIF2gamma; initiation o 94.6 0.032 1.1E-06 56.1 5.5 36 106-141 8-46 (410)
421 2yhs_A FTSY, cell division pro 94.5 0.015 5E-07 60.0 2.6 139 243-400 296-480 (503)
422 3avx_A Elongation factor TS, e 94.3 0.026 9E-07 63.7 4.3 25 107-131 295-319 (1289)
423 1ye8_A Protein THEP1, hypothet 93.9 0.029 9.8E-07 49.8 3.0 23 110-132 2-24 (178)
424 1kgd_A CASK, peripheral plasma 93.8 0.03 1E-06 49.4 2.9 22 110-131 7-28 (180)
425 1vma_A Cell division protein F 93.7 0.056 1.9E-06 52.3 4.9 133 243-400 107-291 (306)
426 2qag_B Septin-6, protein NEDD5 93.7 0.032 1.1E-06 56.5 3.2 27 108-134 42-68 (427)
427 2dy1_A Elongation factor G; tr 93.5 0.052 1.8E-06 58.3 4.7 29 381-409 245-273 (665)
428 3ney_A 55 kDa erythrocyte memb 93.5 0.038 1.3E-06 50.0 2.9 22 110-131 21-42 (197)
429 2rdo_7 EF-G, elongation factor 93.4 0.067 2.3E-06 57.8 5.3 25 106-130 8-32 (704)
430 1lvg_A Guanylate kinase, GMP k 93.2 0.043 1.5E-06 49.3 2.9 22 110-131 6-27 (198)
431 3p32_A Probable GTPase RV1496/ 93.2 0.047 1.6E-06 53.9 3.4 24 109-132 80-103 (355)
432 2px0_A Flagellar biosynthesis 93.2 0.061 2.1E-06 51.8 4.1 124 243-390 108-273 (296)
433 1yrb_A ATP(GTP)binding protein 93.1 0.084 2.9E-06 49.1 4.8 24 108-131 14-37 (262)
434 2rcn_A Probable GTPase ENGC; Y 93.0 0.046 1.6E-06 54.1 3.0 23 110-132 217-239 (358)
435 2ywe_A GTP-binding protein LEP 93.0 0.065 2.2E-06 56.7 4.3 26 106-131 4-29 (600)
436 3zvr_A Dynamin-1; hydrolase, D 92.6 0.05 1.7E-06 59.1 2.9 28 106-133 49-76 (772)
437 1ex7_A Guanylate kinase; subst 92.4 0.06 2E-06 48.2 2.7 21 111-131 4-24 (186)
438 2qm8_A GTPase/ATPase; G protei 92.4 0.066 2.3E-06 52.5 3.2 23 109-131 56-78 (337)
439 3cb4_D GTP-binding protein LEP 92.3 0.046 1.6E-06 57.9 2.0 25 107-131 3-27 (599)
440 1s96_A Guanylate kinase, GMP k 92.3 0.067 2.3E-06 49.1 2.9 23 110-132 18-40 (219)
441 1t9h_A YLOQ, probable GTPase E 92.1 0.03 1E-06 54.3 0.2 23 110-132 175-197 (307)
442 4dzz_A Plasmid partitioning pr 92.0 0.26 8.9E-06 43.7 6.5 85 292-384 76-160 (206)
443 1z6g_A Guanylate kinase; struc 92.0 0.077 2.6E-06 48.4 3.0 22 110-131 25-46 (218)
444 1tq4_A IIGP1, interferon-induc 92.0 0.069 2.4E-06 53.9 2.8 25 109-133 70-94 (413)
445 3tau_A Guanylate kinase, GMP k 91.9 0.082 2.8E-06 47.7 3.0 22 110-131 10-31 (208)
446 1zp6_A Hypothetical protein AT 91.9 0.077 2.6E-06 46.7 2.8 22 110-131 11-32 (191)
447 1udx_A The GTP-binding protein 91.9 0.084 2.9E-06 53.3 3.4 24 110-133 159-182 (416)
448 3a00_A Guanylate kinase, GMP k 91.9 0.08 2.7E-06 46.8 2.9 21 111-131 4-24 (186)
449 3tr0_A Guanylate kinase, GMP k 91.9 0.082 2.8E-06 47.1 2.9 22 110-131 9-30 (205)
450 3kb2_A SPBC2 prophage-derived 91.7 0.092 3.2E-06 45.1 2.9 22 110-131 3-24 (173)
451 1znw_A Guanylate kinase, GMP k 91.6 0.09 3.1E-06 47.3 3.0 23 110-132 22-44 (207)
452 1u0l_A Probable GTPase ENGC; p 91.5 0.082 2.8E-06 50.8 2.7 23 110-132 171-193 (301)
453 2qor_A Guanylate kinase; phosp 91.5 0.094 3.2E-06 47.0 2.9 22 110-131 14-35 (204)
454 3c8u_A Fructokinase; YP_612366 91.3 0.11 3.7E-06 46.8 3.1 23 109-131 23-45 (208)
455 2p67_A LAO/AO transport system 91.3 0.11 3.7E-06 50.9 3.3 23 109-131 57-79 (341)
456 4gp7_A Metallophosphoesterase; 91.1 0.1 3.5E-06 45.6 2.6 20 110-129 11-30 (171)
457 2yv5_A YJEQ protein; hydrolase 91.0 0.11 3.6E-06 50.2 2.9 20 110-129 167-186 (302)
458 1jbk_A CLPB protein; beta barr 90.9 0.12 4.1E-06 44.7 2.9 22 110-131 45-66 (195)
459 3fb4_A Adenylate kinase; psych 90.8 0.12 4.2E-06 46.5 3.0 22 110-131 2-23 (216)
460 1kag_A SKI, shikimate kinase I 90.8 0.13 4.3E-06 44.5 2.9 22 110-131 6-27 (173)
461 3dl0_A Adenylate kinase; phosp 90.8 0.12 4.3E-06 46.5 3.0 22 110-131 2-23 (216)
462 1np6_A Molybdopterin-guanine d 90.7 0.13 4.4E-06 45.4 2.9 23 109-131 7-29 (174)
463 3q5d_A Atlastin-1; G protein, 90.7 0.15 5E-06 52.0 3.7 25 107-131 66-90 (447)
464 2i3b_A HCR-ntpase, human cance 90.6 0.12 4E-06 46.3 2.6 22 110-131 3-24 (189)
465 2j41_A Guanylate kinase; GMP, 90.4 0.15 5.1E-06 45.3 3.2 23 110-132 8-30 (207)
466 1ly1_A Polynucleotide kinase; 90.4 0.17 5.7E-06 43.8 3.4 21 110-130 4-24 (181)
467 2jaq_A Deoxyguanosine kinase; 90.3 0.15 5E-06 45.2 3.0 22 110-131 2-23 (205)
468 2if2_A Dephospho-COA kinase; a 90.1 0.15 5.1E-06 45.5 2.9 22 109-130 2-23 (204)
469 1nks_A Adenylate kinase; therm 90.1 0.17 5.8E-06 44.2 3.2 22 110-131 3-24 (194)
470 4eun_A Thermoresistant glucoki 90.0 0.16 5.3E-06 45.4 2.9 22 110-131 31-52 (200)
471 3t61_A Gluconokinase; PSI-biol 90.0 0.16 5.4E-06 45.3 2.9 22 110-131 20-41 (202)
472 1ak2_A Adenylate kinase isoenz 90.0 0.16 5.4E-06 46.6 3.0 23 109-131 17-39 (233)
473 2bdt_A BH3686; alpha-beta prot 89.9 0.17 5.7E-06 44.6 3.0 21 110-130 4-24 (189)
474 3asz_A Uridine kinase; cytidin 89.8 0.17 5.9E-06 45.3 3.1 23 109-131 7-29 (211)
475 2f1r_A Molybdopterin-guanine d 89.8 0.099 3.4E-06 46.0 1.4 22 110-131 4-25 (171)
476 2bbw_A Adenylate kinase 4, AK4 89.7 0.18 6E-06 46.7 3.1 21 110-130 29-49 (246)
477 3ec2_A DNA replication protein 89.7 0.15 5.1E-06 44.6 2.5 23 110-132 40-62 (180)
478 1cke_A CK, MSSA, protein (cyti 89.7 0.18 6.2E-06 45.6 3.2 23 109-131 6-28 (227)
479 3vaa_A Shikimate kinase, SK; s 89.7 0.19 6.3E-06 44.9 3.2 22 110-131 27-48 (199)
480 2v9p_A Replication protein E1; 89.5 0.18 6.2E-06 48.6 3.1 22 110-131 128-149 (305)
481 3lw7_A Adenylate kinase relate 89.5 0.18 6E-06 43.1 2.8 19 110-128 3-21 (179)
482 4a74_A DNA repair and recombin 89.5 0.17 5.9E-06 45.6 2.9 23 110-132 27-49 (231)
483 3cwq_A Para family chromosome 89.5 1.3 4.4E-05 39.8 8.7 83 292-384 68-151 (209)
484 1knq_A Gluconate kinase; ALFA/ 89.2 0.22 7.5E-06 43.1 3.2 23 109-131 9-31 (175)
485 2p65_A Hypothetical protein PF 89.0 0.15 5.3E-06 44.0 2.0 23 110-132 45-67 (187)
486 1ye8_A Protein THEP1, hypothet 89.0 0.054 1.8E-06 48.0 -1.0 21 242-262 2-22 (178)
487 3trf_A Shikimate kinase, SK; a 88.9 0.24 8.2E-06 43.3 3.2 22 110-131 7-28 (185)
488 1htw_A HI0065; nucleotide-bind 88.8 0.23 7.8E-06 43.0 3.0 23 110-132 35-57 (158)
489 3cm0_A Adenylate kinase; ATP-b 88.8 0.26 8.9E-06 43.0 3.4 22 109-130 5-26 (186)
490 1qhx_A CPT, protein (chloramph 88.7 0.23 7.9E-06 43.0 2.9 22 110-131 5-26 (178)
491 2cbz_A Multidrug resistance-as 88.5 0.24 8.2E-06 45.9 3.1 22 110-131 33-54 (237)
492 3sr0_A Adenylate kinase; phosp 88.5 0.22 7.4E-06 45.2 2.7 23 109-131 1-23 (206)
493 2ehv_A Hypothetical protein PH 88.5 0.23 7.7E-06 45.5 2.9 21 110-130 32-52 (251)
494 2w0m_A SSO2452; RECA, SSPF, un 88.5 0.23 8E-06 44.7 3.0 22 110-131 25-46 (235)
495 1e4v_A Adenylate kinase; trans 88.5 0.23 7.9E-06 44.7 2.9 22 110-131 2-23 (214)
496 1kht_A Adenylate kinase; phosp 88.5 0.26 8.9E-06 43.0 3.2 22 109-130 4-25 (192)
497 3lnc_A Guanylate kinase, GMP k 88.4 0.17 5.9E-06 46.2 2.0 22 110-131 29-51 (231)
498 2ff7_A Alpha-hemolysin translo 88.4 0.25 8.5E-06 46.1 3.1 22 110-131 37-58 (247)
499 1jjv_A Dephospho-COA kinase; P 88.4 0.29 9.8E-06 43.7 3.4 22 109-130 3-24 (206)
500 2qt1_A Nicotinamide riboside k 88.3 0.28 9.5E-06 43.8 3.3 23 109-131 22-44 (207)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=3.2e-36 Score=282.68 Aligned_cols=167 Identities=29% Similarity=0.578 Sum_probs=143.7
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..+||+++|++|||||||+++|+.+.|...+.+|++.++..+.+.. ++..+.+.||||+|+++|..++..+++.+|+
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~---~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL---EDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEEC---SSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEe---cceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 4689999999999999999999999999999999999999988888 8899999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|+|||+++..||+.+..|+..+... ...++|+||||||+|+.+ +++..++++++++++++. |+||||++|.||
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~----~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~-~~e~SAktg~nV 163 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTE----RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNV 163 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH----HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEEBTTTTBSH
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHh----cCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCe-eEEEeCCCCcCH
Confidence 99999999999999999999999877 457799999999999987 889999999999999986 999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy14768 398 EDSMNFLVDRIICSKR 413 (452)
Q Consensus 398 ~~lf~~i~~~i~~~~~ 413 (452)
+++|+.|++.+.....
T Consensus 164 ~e~F~~i~~~i~~~~~ 179 (216)
T 4dkx_A 164 KQLFRRVAAALPGMES 179 (216)
T ss_dssp HHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhhhc
Confidence 9999999998875443
No 2
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=3.8e-34 Score=295.93 Aligned_cols=292 Identities=13% Similarity=0.095 Sum_probs=186.0
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCCCC-----------------CCc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ-----------------TPS 170 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 170 (452)
++|+|||+||||||||||||++++++ ....+++++|+....+.+....+.+.|+.+... ..+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 58999999999999999999999887 556677777887777777777777777777531 122
Q ss_pred eeEEEEcCCCCCchhhhhhhc-------------ccccccccCCCcccccee----eeecccccCCccceeeeeeccccC
Q psy14768 171 YLILITGDSTVGKTSYVQGFV-------------QNKFLDNYKNTVGVDFST----KLLSHKKYGGRPVKLQIWDIYCTL 233 (452)
Q Consensus 171 ~~Il~vgD~~vGkTsl~~r~~-------------~~~~~~~~~~~i~~~~~~----~~~~~~~id~~~~~l~i~d~~~~l 233 (452)
..++||.|+..|.+.....+. -||.|.........+++. .++.++..++.++...+......+
T Consensus 84 d~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 163 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHF 163 (436)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHHHHHHHTG
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHHHHHHHhc
Confidence 379999999999886544332 244443211111112211 334444445544443222111111
Q ss_pred C-----CCCCCcccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc-----
Q psy14768 234 S-----PIQIPTYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ----- 302 (452)
Q Consensus 234 ~-----~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~----- 302 (452)
. ......++|+++|++|||||||+|+++++.+. ....++++.+.....+.. ++. .+.||||||+
T Consensus 164 ~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~---~~~--~~~l~DT~G~~~~~~ 238 (436)
T 2hjg_A 164 KNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY---NQQ--EFVIVDTAGMRKKGK 238 (436)
T ss_dssp GGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEE---TTE--EEEETTHHHHTCBTT
T ss_pred CccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEE---CCe--EEEEEECCCcCcCcc
Confidence 1 12234689999999999999999999986653 566678888887777766 554 5889999998
Q ss_pred -----chhhhhhh-hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHH-
Q psy14768 303 -----DRYICMSR-VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEI- 374 (452)
Q Consensus 303 -----e~~~~~~~-~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~- 374 (452)
++|..++. .+++.+|++|+|||++++.++++.. |...+.. .++|++||+||||+.+ +....++.
T Consensus 239 ~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~-~~~~~~~-------~~~~iiiv~NK~Dl~~~~~~~~~~~~ 310 (436)
T 2hjg_A 239 VYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKR-IAGYAHE-------AGKAVVIVVNKWDAVDKDESTMKEFE 310 (436)
T ss_dssp BCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHH-HHHHHHH-------TTCEEEEEEECGGGSCCCTTHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHH-HHHHHHH-------cCCcEEEEEECccCCCcchHHHHHHH
Confidence 66666654 5889999999999999999999874 5544443 2499999999999986 44333333
Q ss_pred HHHHHHc---CCCEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 375 EAVCHQY---NFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 375 ~~~~~~~---~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
+++.+.+ ...+++++||++|.||+++|+.+.+.+.+...
T Consensus 311 ~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~ 352 (436)
T 2hjg_A 311 ENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSL 352 (436)
T ss_dssp HHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred HHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhhc
Confidence 3333333 34569999999999999999999998876543
No 3
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.98 E-value=5.4e-33 Score=288.87 Aligned_cols=293 Identities=13% Similarity=0.089 Sum_probs=191.1
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCCCC-----------------CC
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ-----------------TP 169 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~ 169 (452)
..+|+|||++|||||||+|||++.++. ....++++++.....+.+....+.+.++.+... ..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 468999999999999999999999887 555667777777777777777777777777431 11
Q ss_pred ceeEEEEcCCCCCchhhhhhhc-------------ccccccccCCCcccccee----eeecccccCCccceeeeeecccc
Q psy14768 170 SYLILITGDSTVGKTSYVQGFV-------------QNKFLDNYKNTVGVDFST----KLLSHKKYGGRPVKLQIWDIYCT 232 (452)
Q Consensus 170 ~~~Il~vgD~~vGkTsl~~r~~-------------~~~~~~~~~~~i~~~~~~----~~~~~~~id~~~~~l~i~d~~~~ 232 (452)
...|+||.|+..|.+.....+. .|+.|.........+++. ..+.++..++.++...+......
T Consensus 103 ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~ 182 (456)
T 4dcu_A 103 ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEH 182 (456)
T ss_dssp CSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTT
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccchHHHHHHHHhh
Confidence 2379999999999887655432 244443211111111111 12233333443333221111111
Q ss_pred C-----CCCCCCcccEEEeeecccCCcceeeecccc-ccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC-----
Q psy14768 233 L-----SPIQIPTYPILITGDSTVGKTSYVQGFVQN-KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG----- 301 (452)
Q Consensus 233 l-----~~~~~~~~kI~ivG~~nvGKSSLin~l~~~-~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG----- 301 (452)
+ .......++|+++|.+|+|||||+|+|++. .......++++.+.....+.. ++. .+.||||||
T Consensus 183 l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~---~~~--~~~l~DT~G~~~~~ 257 (456)
T 4dcu_A 183 FKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY---NQQ--EFVIVDTAGMRKKG 257 (456)
T ss_dssp GGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEE---TTE--EEEETTGGGTTTBT
T ss_pred cccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEE---CCc--eEEEEECCCCCcCc
Confidence 1 112345689999999999999999999975 455667788888877777766 554 788999999
Q ss_pred -----cchhhhhhh-hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHH
Q psy14768 302 -----QDRYICMSR-VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEI 374 (452)
Q Consensus 302 -----~e~~~~~~~-~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~ 374 (452)
+++|..++. .+++.+|++|+|+|++++.+.++... ...+.. .++|+|||+||||+.+ ++...+++
T Consensus 258 ~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~-~~~~~~-------~~~~~ilv~NK~Dl~~~~~~~~~~~ 329 (456)
T 4dcu_A 258 KVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRI-AGYAHE-------AGKAVVIVVNKWDAVDKDESTMKEF 329 (456)
T ss_dssp TBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHH-HHHHHH-------TTCEEEEEEECGGGSCCCSSHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHH-HHHHHH-------cCCCEEEEEEChhcCCCchHHHHHH
Confidence 788887765 47899999999999999877666533 333332 2489999999999987 55566666
Q ss_pred HHHHHHc----CCCEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 375 EAVCHQY----NFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 375 ~~~~~~~----~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
.+.++.. +..++++|||++|.||+++|+++.+.+.+...
T Consensus 330 ~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 330 EENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp HHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred HHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 6665554 34569999999999999999999998877654
No 4
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.97 E-value=1.4e-31 Score=276.93 Aligned_cols=291 Identities=16% Similarity=0.123 Sum_probs=179.0
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCCCC------------------CC
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ------------------TP 169 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~ 169 (452)
.+|+|||+||||||||||||++++++ ....+++++|+....+.+....+.+.|+.+... ..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 47999999999999999999999877 677788888888887777665556666666432 23
Q ss_pred ceeEEEEcCCCCCchhhhhhh-------------cccccccccC-C-Ccccccee----eeecccccCCccceeeeeec-
Q psy14768 170 SYLILITGDSTVGKTSYVQGF-------------VQNKFLDNYK-N-TVGVDFST----KLLSHKKYGGRPVKLQIWDI- 229 (452)
Q Consensus 170 ~~~Il~vgD~~vGkTsl~~r~-------------~~~~~~~~~~-~-~i~~~~~~----~~~~~~~id~~~~~l~i~d~- 229 (452)
+..|+||.|+..|.|.....+ +.||.|.... . ....+|+. ..+.++..++.++...+...
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~ 161 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETII 161 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHHHH
Confidence 347999999999988654322 2255543211 0 01012211 23344555555444322211
Q ss_pred --cccCC-C-----CCCCcccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecC
Q psy14768 230 --YCTLS-P-----IQIPTYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300 (452)
Q Consensus 230 --~~~l~-~-----~~~~~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~Dta 300 (452)
+.... . .....++|+++|++|||||||+|++++... .....++++.+.....+.+ ++. .+.+|||+
T Consensus 162 ~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~---~g~--~~~l~Dt~ 236 (439)
T 1mky_A 162 KKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI---DGR--KYVFVDTA 236 (439)
T ss_dssp HHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEE---TTE--EEEESSCS
T ss_pred HhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEE---CCE--EEEEEECC
Confidence 11101 1 123458999999999999999999998643 4566677777777777766 655 57899999
Q ss_pred Ccchhhhh-----------h-hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C
Q psy14768 301 GQDRYICM-----------S-RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R 367 (452)
Q Consensus 301 G~e~~~~~-----------~-~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~ 367 (452)
|++++... + ..+++.+|++++|+|++++.++++... ...+.. .++|+++|+||||+.+ +
T Consensus 237 G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i-~~~l~~-------~~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 237 GLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRM-AGLMER-------RGRASVVVFNKWDLVVHR 308 (439)
T ss_dssp CC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHH-HHHHHH-------TTCEEEEEEECGGGSTTG
T ss_pred CCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHH-HHHHHH-------cCCCEEEEEECccCCCch
Confidence 98544322 1 246788999999999999888877432 222222 3489999999999976 3
Q ss_pred cccHHHHH-HHHHHc---CCCEEEEecCCCCccHHHHHHHHHHHHHHhh
Q psy14768 368 QVEINEIE-AVCHQY---NFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412 (452)
Q Consensus 368 ~~~~e~~~-~~~~~~---~~~~~~evSAktg~nv~~lf~~i~~~i~~~~ 412 (452)
....++.. .+.+.+ +..+++++||++|.||+++|+.+.+.+.+..
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 309 EKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYT 357 (439)
T ss_dssp GGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 33344333 333333 3456999999999999999999998876653
No 5
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.97 E-value=1.6e-29 Score=233.68 Aligned_cols=169 Identities=33% Similarity=0.610 Sum_probs=153.4
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++|++..+...+.++++.++....+.+ ++..+.+.||||+|+++|..++..+++.+|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL---DGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEE---TTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE---CCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 4589999999999999999999999888888899999988888877 8888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|+|||++++.+|+.+..|+..+... ...++|++||+||+|+.+ +.+..+++.+++...++. |+++||++|.||
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi 158 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRY----ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMP-FLETSALDSTNV 158 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEeCCCCCCH
Confidence 99999999999999999999998876 456799999999999987 677888999999998876 999999999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q psy14768 398 EDSMNFLVDRIICSKRME 415 (452)
Q Consensus 398 ~~lf~~i~~~i~~~~~~~ 415 (452)
+++|+++.+.+.+.....
T Consensus 159 ~~l~~~l~~~i~~~~~~~ 176 (206)
T 2bcg_Y 159 EDAFLTMARQIKESMSQQ 176 (206)
T ss_dssp HHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999998765433
No 6
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.96 E-value=3.2e-29 Score=231.25 Aligned_cols=173 Identities=31% Similarity=0.591 Sum_probs=150.3
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|.+|+|||||+++|++..+...+.++++.++....+.+ ++..+.+.||||+|++.|..++..+++.+|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMV---DDRLVTMQIWDTAGQERFQSLGVAFYRGAD 82 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEES---SSCEEEEEEEEECSSGGGSCSCCGGGTTCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE---CCEEEEEEEEeCCCcHHHHHhHHHHHhCCc
Confidence 34689999999999999999999998888888899999988888877 788899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
++|+|||++++.+|+.+..|+..+..........++|++||+||+|+.++.+..+++..++......+|+++||++|.||
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 83 CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 99999999999999999999988876532112246899999999999876777888888888444445999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy14768 398 EDSMNFLVDRIICSKR 413 (452)
Q Consensus 398 ~~lf~~i~~~i~~~~~ 413 (452)
+++|+++++.+.+...
T Consensus 163 ~~l~~~l~~~~~~~~~ 178 (207)
T 1vg8_A 163 EQAFQTIARNALKQET 178 (207)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999987554
No 7
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=226.98 Aligned_cols=167 Identities=25% Similarity=0.492 Sum_probs=147.2
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|.+|+|||||+++|+++.+...+.++++..+ ...+.+ ++..+.+.||||+|++.|..++..+++.+|
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 87 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL---DGEEVQIDILDTAGQEDYAAIRDNYFRSGE 87 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEE---TTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEE---CCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence 3468999999999999999999999888888888887655 344555 788889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM 396 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n 396 (452)
++|+|||+++..+|+.+..|+..+.... ...++|++||+||+|+.+ +++..+++.+++..+++. |+++||++|.|
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~g 163 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVK---EDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETSAKTRAN 163 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHT---TCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEECTTTCTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCe-EEEEeCCCCCC
Confidence 9999999999999999999999887762 235799999999999987 678888999999998875 99999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy14768 397 IEDSMNFLVDRIICSK 412 (452)
Q Consensus 397 v~~lf~~i~~~i~~~~ 412 (452)
|+++|+++++.+...+
T Consensus 164 i~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 164 VDKVFFDLMREIRARK 179 (206)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc
Confidence 9999999999988654
No 8
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.96 E-value=1.3e-28 Score=222.79 Aligned_cols=167 Identities=31% Similarity=0.635 Sum_probs=123.0
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++|+++.+...+.++++.++....+.+ ++..+.+.||||+|++.|..++..+++++|+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL---DGKRIKLQIWDTAGQERFRTITTAYYRGAMG 83 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEE---TTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEE---CCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence 4589999999999999999999998888888899999988888877 8888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|+|||++++.+|+.+..|+..+... ...++|++||+||+|+.+ +.+..++++++++.+++. |++|||++|.||
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i 158 (183)
T 2fu5_C 84 IMLVYDITNEKSFDNIRNWIRNIEEH----ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIK-FMETSAKANINV 158 (183)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCE-EEECCC---CCH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCe-EEEEeCCCCCCH
Confidence 99999999999999999999988876 346799999999999987 677889999999999875 999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy14768 398 EDSMNFLVDRIICSKR 413 (452)
Q Consensus 398 ~~lf~~i~~~i~~~~~ 413 (452)
+++|+++++.+.....
T Consensus 159 ~~l~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 159 ENAFFTLARDIKAKMD 174 (183)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999876543
No 9
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.96 E-value=5.6e-28 Score=220.74 Aligned_cols=169 Identities=30% Similarity=0.589 Sum_probs=154.2
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|.+|+|||||+++|+++.+...+.++++.++....+.+ ++..+.+.||||+|++.+..++..+++.+|
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL---DGKTIKLQIWDTAGQERFRTITSSYYRGAH 90 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEE---TTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE---CCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence 44689999999999999999999999998888999999998888888 888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM 396 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n 396 (452)
++|+|||++++.+|+.+..|+..+... ...++|++||+||+|+.+ +.+..++.++++..+++. |+++||++|.|
T Consensus 91 ~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~g 165 (196)
T 3tkl_A 91 GIIVVYDVTDQESFNNVKQWLQEIDRY----ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FLETSAKNATN 165 (196)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEEECTTTCTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCc-EEEEeCCCCCC
Confidence 999999999999999999999999877 456799999999999987 778888999999999987 99999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy14768 397 IEDSMNFLVDRIICSKRM 414 (452)
Q Consensus 397 v~~lf~~i~~~i~~~~~~ 414 (452)
|+++|+++++.+.+....
T Consensus 166 v~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 166 VEQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999876554
No 10
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.95 E-value=7.4e-28 Score=216.43 Aligned_cols=170 Identities=32% Similarity=0.598 Sum_probs=151.8
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|.+|+|||||+++++++.+...+.++++.++....+.+ ++..+.+.+|||+|++.+..++..+++.+|
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 83 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI---NGEKVKLQIWDTAGQERFRTITSTYYRGTH 83 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEE---TTEEEEEEEEEETTGGGCSSCCGGGGTTCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEE---CCEEEEEEEEcCCCchhhhhhHHHHhccCC
Confidence 34689999999999999999999998888888899999998888887 888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM 396 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n 396 (452)
++|+|||++++.+++.+..|+..+... ..++|++||+||+|+.+ +.+..++...++...++. ++++||++|.|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~g 157 (181)
T 3tw8_B 84 GVIVVYDVTSAESFVNVKRWLHEINQN-----CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQ-LFETSAKENVN 157 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHH-----CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-EEECBTTTTBS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh-----CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCe-EEEEECCCCCC
Confidence 999999999999999999999998776 35799999999999987 667888899999999986 99999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhH
Q psy14768 397 IEDSMNFLVDRIICSKRMEE 416 (452)
Q Consensus 397 v~~lf~~i~~~i~~~~~~~~ 416 (452)
|+++|+++.+.+.+.+....
T Consensus 158 i~~l~~~l~~~~~~~~~~~~ 177 (181)
T 3tw8_B 158 VEEMFNCITELVLRAKKDNL 177 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 99999999999987766443
No 11
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.95 E-value=6e-28 Score=223.00 Aligned_cols=168 Identities=35% Similarity=0.640 Sum_probs=143.7
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|.+|||||||+++|+++.+...+.+|++.++....+.+ ++..+.+.||||+|+++|..++..+++++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEI---QGKRVKLQIWDTAGQERFRTITQSYYRSAN 103 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEE---TTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEE---CCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence 34589999999999999999999998888888899998888888877 888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM 396 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n 396 (452)
++|+|||++++.+|+.+..|+..+... ...++|++||+||+|+.+ +.+..+++++++..+++..|++|||++|.|
T Consensus 104 ~iilv~D~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g 179 (201)
T 2hup_A 104 GAILAYDITKRSSFLSVPHWIEDVRKY----AGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSN 179 (201)
T ss_dssp EEEEEEETTBHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCC
Confidence 999999999999999999999998876 356799999999999986 678889999999999985699999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy14768 397 IEDSMNFLVDRIICSK 412 (452)
Q Consensus 397 v~~lf~~i~~~i~~~~ 412 (452)
|+++|+++++.+.+..
T Consensus 180 i~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 180 VEEAFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887543
No 12
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.9e-28 Score=229.87 Aligned_cols=171 Identities=28% Similarity=0.552 Sum_probs=142.8
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|||||||+++|++..+...+.++++.++....+.+ ++..+.+.||||+|+++|..++..+++.+|+
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI---EGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEE---TTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE---CCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 3589999999999999999999998888888899998888888877 8888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|+|||++++.+|+.+..|+..+... ...++|++||+||+|+.+ +++..+++.+++...++. |+++||++|.||
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~----~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 163 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELREN----ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLL-FTETSALNSENV 163 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHH----CC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCE-EEECCCC-CCCH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence 99999999999999999999998776 345799999999999976 677888899999998875 999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhHH
Q psy14768 398 EDSMNFLVDRIICSKRMEEE 417 (452)
Q Consensus 398 ~~lf~~i~~~i~~~~~~~~~ 417 (452)
+++|+++++.+.+.....+.
T Consensus 164 ~~l~~~l~~~i~~~~~~~~~ 183 (223)
T 3cpj_B 164 DKAFEELINTIYQKVSKHQM 183 (223)
T ss_dssp HHHHHHHHHHHTTCC-----
T ss_pred HHHHHHHHHHHHHHhhhccc
Confidence 99999999999877655443
No 13
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.95 E-value=1.5e-27 Score=216.12 Aligned_cols=167 Identities=29% Similarity=0.556 Sum_probs=144.5
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++|+++.+...+.++++ +.....+.. ++..+.+.+|||+|++.+..++..+++.+|+
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVI---DGETCLLDILDTAGQEEYSAMRDQYMRTGEG 78 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEE---TTEEEEEEEEECCCC---CTTHHHHHHHCSE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEE---CCcEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence 358999999999999999999999888877777775 444455555 8888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
+|+|||+++..+|+.+..|+..+.... ...++|++||+||+|+.++.+..+++..++..+++. |+++||++|.|++
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi~ 154 (189)
T 4dsu_A 79 FLCVFAINNTKSFEDIHHYREQIKRVK---DSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIP-FIETSAKTRQGVD 154 (189)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHT---TCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCC-EEECCTTTCTTHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHH
Confidence 999999999999999999998887752 345799999999999987778889999999999987 9999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q psy14768 399 DSMNFLVDRIICSKR 413 (452)
Q Consensus 399 ~lf~~i~~~i~~~~~ 413 (452)
++|+++.+.+...+.
T Consensus 155 ~l~~~l~~~~~~~~~ 169 (189)
T 4dsu_A 155 DAFYTLVREIRKHKE 169 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999876654
No 14
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.95 E-value=1.3e-27 Score=216.57 Aligned_cols=168 Identities=28% Similarity=0.577 Sum_probs=151.8
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|.+|+|||||+++|+++.+...+.++++.++....+.. ++..+.+.+|||+|++.|..++..+++++|
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 84 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV---GGKYVKLQIWDTAGQERFRSVTRSYYRGAA 84 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE---TTEEEEEEEEEECCSGGGHHHHHTTSTTCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE---CCEEEEEEEEeCCCcHHHHHHHHHHHhcCC
Confidence 34689999999999999999999998888888899998888888777 888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM 396 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n 396 (452)
++|+|||++++.+|+.+..|+..+... ...++|++||+||+|+.+ +.+..+++.+++...++. |+++||++|.|
T Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~g 159 (186)
T 2bme_A 85 GALLVYDITSRETYNALTNWLTDARML----ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELM-FLETSALTGEN 159 (186)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEecCCCCCC
Confidence 999999999999999999999888776 446799999999999976 677888899999998875 99999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy14768 397 IEDSMNFLVDRIICSKR 413 (452)
Q Consensus 397 v~~lf~~i~~~i~~~~~ 413 (452)
|+++|+++++.+.+...
T Consensus 160 i~~l~~~l~~~~~~~~~ 176 (186)
T 2bme_A 160 VEEAFVQCARKILNKIE 176 (186)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999886544
No 15
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.2e-27 Score=221.40 Aligned_cols=165 Identities=31% Similarity=0.552 Sum_probs=150.9
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|++|||||||+++|+++.+...+.+|++.++....+.+ ++..+.+.||||+|+++|..++..+++.+|+
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI---NGEKVKLQIWDTAGQERFRSITQSYYRSANA 101 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEE---TTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE---CCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence 4589999999999999999999998888888899999998888887 8888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|+|||++++.+|+.+..|+..+... ...++|++||+||+|+.+ +++..+++++++...++. |++|||++|.||
T Consensus 102 ~i~v~D~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~g~gv 176 (201)
T 2ew1_A 102 LILTYDITCEESFRCLPEWLREIEQY----ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMY-YLETSAKESDNV 176 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCC-EEECCTTTCTTH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence 99999999999999999999998876 456799999999999976 677888899999988876 999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy14768 398 EDSMNFLVDRIICS 411 (452)
Q Consensus 398 ~~lf~~i~~~i~~~ 411 (452)
+++|+++++.+...
T Consensus 177 ~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 177 EKLFLDLACRLISE 190 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 16
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.95 E-value=1.3e-27 Score=218.38 Aligned_cols=167 Identities=28% Similarity=0.561 Sum_probs=147.0
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...+||+++|.+|+|||||+++|+++.+...+.++++.++....+.+ ++..+.+.||||+|++.|..++..+++++|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI---DGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE---TTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE---CCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 34689999999999999999999998888888888888888878777 888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM 396 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n 396 (452)
++|+|||++++.+++.+..|+..+... ...++|++||+||+|+.+ +++..+++++++...++. |+++||++|.|
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~----~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~g 170 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQH----SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLI-FMETSAKTACN 170 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEECTTTCTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCE-EEEEeCCCCCC
Confidence 999999999999999999999998876 456799999999999976 677888999999999875 99999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy14768 397 IEDSMNFLVDRIICSK 412 (452)
Q Consensus 397 v~~lf~~i~~~i~~~~ 412 (452)
|+++|+++++.+.+..
T Consensus 171 i~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 171 VEEAFINTAKEIYRKI 186 (191)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987643
No 17
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=218.86 Aligned_cols=166 Identities=31% Similarity=0.570 Sum_probs=142.8
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|.+|+|||||+++|+++.+...+.++++.++....+.+ ++..+.+.||||+|+++|..++..+++++|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVEL---RGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEE---TTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEE---CCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 34689999999999999999999998888888899998888888877 888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM 396 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n 396 (452)
++|+|||++++.+|+++..|+..+... ...++|++||+||+|+.+ +++..++++++++.+....|+++||++|.|
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~----~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g 176 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKY----ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFN 176 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBS
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCC
Confidence 999999999999999999999888776 456799999999999976 677888899999886555699999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy14768 397 IEDSMNFLVDRIIC 410 (452)
Q Consensus 397 v~~lf~~i~~~i~~ 410 (452)
|+++|+++++.+.+
T Consensus 177 i~~l~~~l~~~i~~ 190 (192)
T 2il1_A 177 VDEIFLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 18
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.95 E-value=4.6e-28 Score=224.90 Aligned_cols=167 Identities=27% Similarity=0.463 Sum_probs=142.9
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++|+++.+...+.+|++.++ ...+.+ ++..+.+.||||+|+++|..++..+++++|+
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 83 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAV---DGQIVNLGLWDTAGQEDYSRLRPLSYRGADI 83 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEEC---SSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEE---CCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence 468999999999999999999999888888888888665 445555 7788999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cc--------ccHHHHHHHHHHcCCCEEEE
Q psy14768 319 CIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQ--------VEINEIEAVCHQYNFMSWIE 388 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~--------~~~e~~~~~~~~~~~~~~~e 388 (452)
+|+|||++++.+|+.+. .|+..+... ..++|++||+||+|+.+ +. +..+++.+++..++..+|++
T Consensus 84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 158 (212)
T 2j0v_A 84 FVLAFSLISKASYENVLKKWMPELRRF-----APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIE 158 (212)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH-----CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEE
Confidence 99999999999999996 799888775 24799999999999965 22 37888999999999867999
Q ss_pred ecCCCCccHHHHHHHHHHHHHHhhhh
Q psy14768 389 VSSKEHLMIEDSMNFLVDRIICSKRM 414 (452)
Q Consensus 389 vSAktg~nv~~lf~~i~~~i~~~~~~ 414 (452)
|||++|.||+++|+++++.+.+....
T Consensus 159 ~Sa~~g~gi~~l~~~l~~~~~~~~~~ 184 (212)
T 2j0v_A 159 CSSKTQQNVKAVFDTAIKVVLQPPRR 184 (212)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHCC---
T ss_pred ccCCCCCCHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999876543
No 19
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.95 E-value=1.6e-27 Score=212.03 Aligned_cols=164 Identities=32% Similarity=0.578 Sum_probs=143.1
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.++|+++|.+|+|||||+++++++.+...+.++++.++....+.+ ++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 79 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI---NGKKVKLQIWDTAGQERFRTITTAYYRGAMGI 79 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEES---SSCEEEEEEECCTTGGGTSCCCHHHHTTEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE---CCEEEEEEEEeCCCChhhhhhHHHHhccCCEE
Confidence 579999999999999999999998888888899998888887777 77889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~ 399 (452)
|+|||++++.+++.+..|+..+... ...++|++||+||+|+.++.+..+++.++++.+++. ++++||++|.|+++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~ 154 (170)
T 1g16_A 80 ILVYDITDERTFTNIKQWFKTVNEH----ANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESSAKNDDNVNE 154 (170)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCC-EEECBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCe-EEEEECCCCCCHHH
Confidence 9999999999999999999988876 346799999999999966777888999999999986 99999999999999
Q ss_pred HHHHHHHHHHHh
Q psy14768 400 SMNFLVDRIICS 411 (452)
Q Consensus 400 lf~~i~~~i~~~ 411 (452)
+|+++.+.+.+.
T Consensus 155 l~~~l~~~~~~~ 166 (170)
T 1g16_A 155 IFFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
No 20
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.95 E-value=3.6e-27 Score=211.59 Aligned_cols=169 Identities=30% Similarity=0.587 Sum_probs=146.8
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++++++.+...+.++++.++....+.+ ++..+.+.+|||+|++.+..++..+++.+|+
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV---DGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEE---TTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEE---CCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 4589999999999999999999998888888899998888888777 8888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
+|+|||+++..+++.+..|+..+..........++|++||+||+|+.++++..+++.+++......+|+++||++|.||+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA 162 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 99999999999999999999998876432233678999999999998777788899999985555559999999999999
Q ss_pred HHHHHHHHHHHH
Q psy14768 399 DSMNFLVDRIIC 410 (452)
Q Consensus 399 ~lf~~i~~~i~~ 410 (452)
++|+++++.+.+
T Consensus 163 ~l~~~l~~~~~~ 174 (177)
T 1wms_A 163 AAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 21
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.95 E-value=2.3e-27 Score=218.29 Aligned_cols=168 Identities=22% Similarity=0.246 Sum_probs=144.6
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh-hhhhhhcCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC-MSRVYYQNS 316 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~-~~~~~i~~a 316 (452)
...+||+++|++|||||||+++|++......+.++++.++....+.+ ++..+.+.+|||+|++.+.. ++..+++.+
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV---DKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEE---TTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEE---CCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 45689999999999999999999875554455677777877777777 88899999999999988765 778889999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768 317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL 395 (452)
Q Consensus 317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~ 395 (452)
|++|+|||+++..+|+.+..|+..+.... ...++|++||+||+|+.+ +.+..+++++++..+++. |+++||++|.
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sa~~~~ 173 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGR---PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIETSAALHH 173 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHS---TTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEEEBTTTTB
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCE-EEEEcCCCCC
Confidence 99999999999999999999999887652 224799999999999986 778888999999998874 9999999999
Q ss_pred cHHHHHHHHHHHHHHhh
Q psy14768 396 MIEDSMNFLVDRIICSK 412 (452)
Q Consensus 396 nv~~lf~~i~~~i~~~~ 412 (452)
||+++|+++++.+...+
T Consensus 174 ~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 174 NTRELFEGAVRQIRLRR 190 (195)
T ss_dssp SHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999886543
No 22
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.95 E-value=3.4e-27 Score=213.39 Aligned_cols=166 Identities=29% Similarity=0.502 Sum_probs=149.0
Q ss_pred CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS 316 (452)
Q Consensus 237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a 316 (452)
....++|+++|.+|+|||||+++|+++.+...+.++++..+ ...+.. ++..+.+.+|||+|++.|..++..+++++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 90 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEI---DNQWAILDVLDTAGQEEFSAMREQYMRTG 90 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE---TTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEe---CCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 44579999999999999999999999988888888888777 555566 88889999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCC-CC
Q psy14768 317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK-EH 394 (452)
Q Consensus 317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAk-tg 394 (452)
|++|+|||++++.+|+.+..|+..+.... ...++|++||+||+|+.+ +.+..+++++++..+++. |+++||+ ++
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~ 166 (183)
T 3kkq_A 91 DGFLIVYSVTDKASFEHVDRFHQLILRVK---DRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP-YIETSAKDPP 166 (183)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHH---TSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC-EEEEBCSSSC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCe-EEEeccCCCC
Confidence 99999999999999999999998886642 346799999999999987 788899999999999976 9999999 99
Q ss_pred ccHHHHHHHHHHHHHH
Q psy14768 395 LMIEDSMNFLVDRIIC 410 (452)
Q Consensus 395 ~nv~~lf~~i~~~i~~ 410 (452)
.||+++|+++++.+.+
T Consensus 167 ~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 167 LNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999998764
No 23
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.95 E-value=9.6e-28 Score=213.74 Aligned_cols=164 Identities=34% Similarity=0.593 Sum_probs=141.7
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++++++.+...+.++++.++....+.+ ++..+.+.+|||+|++.+..++..+++++|+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI---GGKRVNLAIWDTAGQERFHALGPIYYRDSNG 81 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEES---SSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEE---CCEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence 4589999999999999999999998888888899998888778777 8888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|+|||++++.+++.+..|+..+... ...++|++||+||+|+.+ +.+..++++++++.++.. ++++||++|.|+
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 156 (170)
T 1z08_A 82 AILVYDITDEDSFQKVKNWVKELRKM----LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAK-HYHTSAKQNKGI 156 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHH----HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEEBTTTTBSH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEecCCCCCCH
Confidence 99999999999999999999888765 234689999999999976 677888999999998865 999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy14768 398 EDSMNFLVDRIIC 410 (452)
Q Consensus 398 ~~lf~~i~~~i~~ 410 (452)
+++|+++++.+.+
T Consensus 157 ~~l~~~l~~~~~~ 169 (170)
T 1z08_A 157 EELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988764
No 24
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.95 E-value=2.3e-27 Score=212.86 Aligned_cols=164 Identities=29% Similarity=0.600 Sum_probs=148.7
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++++++.+...+.++++.++....+.+ ++..+.+.+|||+|++.+..++..+++++|+
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV---SGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEE---TTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE---CCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 4689999999999999999999998888888889998888887777 8888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|+|||++++.+++.+..|+..+... ...++|++||+||+|+.+ +.+..++++++++.+++. |+++||++|.||
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 165 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNL----TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLL-FLEASAKTGENV 165 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTH
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence 99999999999999999999988876 446799999999999976 677888999999998875 999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy14768 398 EDSMNFLVDRIIC 410 (452)
Q Consensus 398 ~~lf~~i~~~i~~ 410 (452)
+++|+++++.+.+
T Consensus 166 ~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 166 EDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987753
No 25
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.95 E-value=2.8e-27 Score=213.52 Aligned_cols=166 Identities=30% Similarity=0.440 Sum_probs=146.6
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++|+++.+...+.++++..+ ...+.. ++..+.+.+|||+|++.|..++..+++.+|+
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITV---NGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE---TTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEE---CCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence 358999999999999999999998888888889888777 556666 8888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|+|||+++..+|+.+..|+..+.... ...++|++||+||+|+.+ +.+..++++++++.+++. |+++||++|.|+
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v 156 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVIKVIHGKLLDMV---GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAA-FLESSAKENQTA 156 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC-------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEECCTTSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCc-EEEEecCCCCCH
Confidence 999999999999999999998886652 335799999999999976 788899999999999986 999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy14768 398 EDSMNFLVDRIICSK 412 (452)
Q Consensus 398 ~~lf~~i~~~i~~~~ 412 (452)
+++|+++++.+...+
T Consensus 157 ~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 157 VDVFRRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987654
No 26
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.95 E-value=2.1e-27 Score=221.71 Aligned_cols=167 Identities=20% Similarity=0.351 Sum_probs=145.4
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...+||+++|.+|||||||+++|+++.+...+.+|++.++ ...+.+ ++..+.+.||||+|+++|..++..+++++|
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLET---EEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC-----CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEE---CCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 4469999999999999999999999999888889998776 345555 778899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHH-HHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCC
Q psy14768 318 GCIIMFDLTNRKSFES-VVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNF 383 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~-~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~ 383 (452)
++|+|||++++.+|+. +..|+..+... ..++|++||+||+|+.+ +.+..+++.+++..+++
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 175 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDY-----CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA 175 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHH-----CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCC
Confidence 9999999999999999 68899999876 25799999999999964 56889999999999999
Q ss_pred CEEEEecCCCCcc-HHHHHHHHHHHHHHhhh
Q psy14768 384 MSWIEVSSKEHLM-IEDSMNFLVDRIICSKR 413 (452)
Q Consensus 384 ~~~~evSAktg~n-v~~lf~~i~~~i~~~~~ 413 (452)
.+|++|||++|.| |+++|+++++.+.....
T Consensus 176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 176 EIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred CEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 6699999999998 99999999999886544
No 27
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.95 E-value=4e-27 Score=214.57 Aligned_cols=165 Identities=32% Similarity=0.633 Sum_probs=149.2
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++|+++.+...+.++.+.++....+.. ++..+.+.||||+|++.|..++..+++.+|+
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYR---HDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEE---TTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEE---CCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 3589999999999999999999998888888889888887777776 7888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|+|||++++.+|+.+..|+..+... ...++|++||+||+|+.+ +.+..++++++++.+++. |+++||++|.||
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi 172 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTY----SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFE-FFEASAKENINV 172 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEECCCCCCH
Confidence 99999999999999999999988876 346799999999999976 677788999999999875 999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy14768 398 EDSMNFLVDRIICS 411 (452)
Q Consensus 398 ~~lf~~i~~~i~~~ 411 (452)
+++|+++++.+.+.
T Consensus 173 ~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 173 KQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988653
No 28
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.95 E-value=3.4e-27 Score=212.58 Aligned_cols=165 Identities=28% Similarity=0.548 Sum_probs=148.5
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++++++.+...+.++++.++....+.+ ++..+.+.||||+|+++|..++..+++.+|+
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAV---NDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEE---TTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEE---CCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 4589999999999999999999998888888889998888888777 8888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|+|||++++.+|+.+..|+..+... ...++|++||+||+|+.+ +++..+++++++...++. |+++||++|.||
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi 162 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQ----GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLF-FMETSAKTATNV 162 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEECCSSSCTTH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCE-EEEEECCCCCCH
Confidence 99999999999999999999988876 446799999999999976 677888999999998875 999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy14768 398 EDSMNFLVDRIICS 411 (452)
Q Consensus 398 ~~lf~~i~~~i~~~ 411 (452)
+++|+++++.+...
T Consensus 163 ~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 163 KEIFYEIARRLPRV 176 (181)
T ss_dssp HHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998877543
No 29
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=4.3e-27 Score=211.68 Aligned_cols=167 Identities=29% Similarity=0.580 Sum_probs=140.9
Q ss_pred CCcccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS 316 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a 316 (452)
...++|+++|.+|+|||||+++|++..+. ..+.++++.++....+.. ++..+.+.+|||+|++.|..++..+++++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV---DGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE---TTEEEEEEEEECCCC--------CCGGGC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEE---CCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 34689999999999999999999987775 467789998888777777 88889999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768 317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL 395 (452)
Q Consensus 317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~ 395 (452)
|++|+|||++++.+++++..|+..+... ...++|++||+||+|+.+ +.+..++++++++.+++. ++++||++|.
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 159 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEY----AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLP-FMETSAKTGL 159 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCC-EEECCTTTCT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEeCCCCC
Confidence 9999999999999999999999988876 346799999999999987 677888899999998886 9999999999
Q ss_pred cHHHHHHHHHHHHHHhh
Q psy14768 396 MIEDSMNFLVDRIICSK 412 (452)
Q Consensus 396 nv~~lf~~i~~~i~~~~ 412 (452)
||+++|+++.+.+.+.+
T Consensus 160 gi~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 160 NVDLAFTAIAKELKRRS 176 (180)
T ss_dssp THHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999886543
No 30
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.95 E-value=5.4e-27 Score=213.67 Aligned_cols=164 Identities=18% Similarity=0.300 Sum_probs=141.2
Q ss_pred CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS 316 (452)
Q Consensus 237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a 316 (452)
....+||+++|++|||||||+++++++.+...+.++. .++ ...+.+ ++..+.+.||||+|++.|. +++++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~-~~~~~~---~~~~~~l~i~Dt~G~~~~~-----~~~~~ 86 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRF-KKEIVV---DGQSYLLLIRDEGGPPELQ-----FAAWV 86 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEE-EEEEEE---TTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceE-EEEEEE---CCEEEEEEEEECCCChhhh-----eecCC
Confidence 3457999999999999999999999988887777763 344 366666 8889999999999999877 78899
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHHHcCCCEEEEecCCC
Q psy14768 317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCHQYNFMSWIEVSSKE 393 (452)
Q Consensus 317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~~~~~~~~~evSAkt 393 (452)
|++|+|||++++.+|+++..|+..+.... ...++|++||+||+|+.+ +.+..+++.+++..++...|++|||++
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 163 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYNYFLRLCSFR---NASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATY 163 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTTS---CGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCC
Confidence 99999999999999999999999988762 125689999999999952 778899999999999866699999999
Q ss_pred CccHHHHHHHHHHHHHHhhh
Q psy14768 394 HLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 394 g~nv~~lf~~i~~~i~~~~~ 413 (452)
|.||+++|+++++.+.+.+.
T Consensus 164 ~~gv~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 164 GLNVERVFQDVAQKVVALRK 183 (184)
T ss_dssp TBTHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999886643
No 31
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.95 E-value=4.2e-27 Score=215.01 Aligned_cols=167 Identities=29% Similarity=0.576 Sum_probs=150.6
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|.+|+|||||+++|++..+...+.++++.++....+.+ ++..+.+.||||+|+++|..++..+++.+|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML---GTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEE---TTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE---CCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 34689999999999999999999998888888889898888887777 888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM 396 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n 396 (452)
++|+|||++++.+|+.+..|+..+... ...++|++||+||+|+.+ +.+..+++..++...++. |+++||++|.|
T Consensus 100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~g 174 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVERWLKELYDH----AEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLL-FLETSALDSTN 174 (193)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHTT----SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEECTTTCTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEeCCCCCC
Confidence 999999999999999999999988776 346799999999999976 677888899999988875 99999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy14768 397 IEDSMNFLVDRIICSK 412 (452)
Q Consensus 397 v~~lf~~i~~~i~~~~ 412 (452)
|+++|+++++.+.+..
T Consensus 175 i~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 175 VELAFETVLKEIFAKV 190 (193)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887643
No 32
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=8.9e-28 Score=219.46 Aligned_cols=166 Identities=34% Similarity=0.634 Sum_probs=151.7
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..+||+++|.+|||||||+++|+++.+...+.++.+.++....+.. ++..+.+.||||+|++.|..++..+++.+|+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYR---HEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEE---TTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEE---CCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 4689999999999999999999998888888888888888888777 7888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|+|||++++.+|+.+..|+..+... ...++|++||+||+|+.+ +.+..++++.++..+++. |+++||++|.||
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 173 (191)
T 3dz8_A 99 FILMYDITNEESFNAVQDWATQIKTY----SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFD-FFEASAKENISV 173 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEECCCCCCH
Confidence 99999999999999999999999876 456799999999999976 778889999999999985 999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy14768 398 EDSMNFLVDRIICSK 412 (452)
Q Consensus 398 ~~lf~~i~~~i~~~~ 412 (452)
+++|+++++.+.+..
T Consensus 174 ~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 174 RQAFERLVDAICDKM 188 (191)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987654
No 33
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.95 E-value=7.7e-27 Score=214.94 Aligned_cols=166 Identities=33% Similarity=0.635 Sum_probs=150.8
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++|++..+...+.++++.++....+.. ++..+.+.||||+|+++|..++..+++++|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYR---NDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEE---TTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEE---CCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 3589999999999999999999999888888899998888777777 8888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|+|||++++.+|+.+..|+..+... ...++|++||+||+|+.+ +.+..+++.+++..+++. |+++||++|.||
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 158 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTY----SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFE-FFEASAKDNINV 158 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHH----SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCE-EEECBTTTTBSS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCe-EEEEECCCCCCH
Confidence 99999999999999999999998876 346799999999999987 677888999999999875 999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy14768 398 EDSMNFLVDRIICSK 412 (452)
Q Consensus 398 ~~lf~~i~~~i~~~~ 412 (452)
+++|+++++.+.+..
T Consensus 159 ~~l~~~l~~~i~~~~ 173 (203)
T 1zbd_A 159 KQTFERLVDVICEKM 173 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887654
No 34
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.95 E-value=4.1e-27 Score=209.18 Aligned_cols=162 Identities=27% Similarity=0.583 Sum_probs=146.2
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++|+++.+...+.++.+.++....+.+ ++..+.+.+|||+|++.|..++..+++.+|+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL---DDTTVKFEIWDTAGQERYHSLAPMYYRGAQA 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE---TTEEEEEEEEEECCSGGGGGGHHHHHTTCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE---CCEEEEEEEEeCCCcHHhhhhhHHhccCCCE
Confidence 3589999999999999999999998888888888888887777777 8888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|+|||++++.+++.+..|+..+... ...++|++||+||+|+.+ +.+..+++.+++...++. |+++||++|.|+
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi 156 (170)
T 1r2q_A 82 AIVVYDITNEESFARAKNWVKELQRQ----ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL-FMETSAKTSMNV 156 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCe-EEEEeCCCCCCH
Confidence 99999999999999999999988776 456799999999999976 667788899999988875 999999999999
Q ss_pred HHHHHHHHHHH
Q psy14768 398 EDSMNFLVDRI 408 (452)
Q Consensus 398 ~~lf~~i~~~i 408 (452)
+++|++|++.+
T Consensus 157 ~~l~~~i~~~~ 167 (170)
T 1r2q_A 157 NEIFMAIAKKL 167 (170)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 35
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.95 E-value=6.4e-27 Score=208.16 Aligned_cols=162 Identities=28% Similarity=0.532 Sum_probs=147.4
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++++++.+...+.++.+.++....+.+ ++..+.+.+|||+|++.+..++..+++.+|+
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~ 81 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQY---QNELHKFLIWDTAGLERFRALAPMYYRGSAA 81 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE---TTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEE---CCeEEEEEEEcCCCchhhhcccHhhCcCCCE
Confidence 3589999999999999999999998888888899998888777777 8888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|+|||++++.+++.+..|+..+... .....|++||+||+|+.+ +++..++...++...+.. |+++||++|.|+
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~l~~~----~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i 156 (170)
T 1z0j_A 82 AIIVYDITKEETFSTLKNWVRELRQH----GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAI-FVETSAKNAINI 156 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHH----SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCE-EEEEeCCCCcCH
Confidence 99999999999999999999988876 457799999999999987 677788899999998875 999999999999
Q ss_pred HHHHHHHHHHH
Q psy14768 398 EDSMNFLVDRI 408 (452)
Q Consensus 398 ~~lf~~i~~~i 408 (452)
+++|+++.+.+
T Consensus 157 ~~l~~~i~~~i 167 (170)
T 1z0j_A 157 NELFIEISRRI 167 (170)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 36
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.95 E-value=6.4e-27 Score=210.28 Aligned_cols=169 Identities=26% Similarity=0.445 Sum_probs=148.3
Q ss_pred CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS 316 (452)
Q Consensus 237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a 316 (452)
....++|+++|.+|+|||||+++|++..+...+.++++.++. ..+.+ ++..+.+.+|||+|+++|..++..+++.+
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~---~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 81 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSV---DGIPARLDILDTAGQEEFGAMREQYMRAG 81 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEE---TTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEE---CCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence 345689999999999999999999999888888888887765 55555 77888999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768 317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL 395 (452)
Q Consensus 317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~ 395 (452)
|++|+|||+++..+++.+..|+..+.... ...++|++||+||+|+.+ +++..+++..++...++. |+++||++|.
T Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~ 157 (181)
T 2fn4_A 82 HGFLLVFAINDRQSFNEVGKLFTQILRVK---DRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVA-YFEASAKLRL 157 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHH---TSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTB
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEecCCCCC
Confidence 99999999999999999999988885442 345799999999999987 677888899999888875 9999999999
Q ss_pred cHHHHHHHHHHHHHHhhh
Q psy14768 396 MIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 396 nv~~lf~~i~~~i~~~~~ 413 (452)
||+++|+++.+.+.+.+.
T Consensus 158 gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 158 NVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp SHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhhc
Confidence 999999999999876544
No 37
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.95 E-value=2.2e-27 Score=218.93 Aligned_cols=167 Identities=28% Similarity=0.576 Sum_probs=140.3
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|.+|||||||+++|+++.+...+.++++.++....+.+ ++..+.+.||||+|++.|..++..+++.+|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 99 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV---GGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEE---TTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEE---CCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence 34689999999999999999999998888888899998888888777 888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM 396 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n 396 (452)
++|+|||++++.+|+.+..|+..+... ...++|++||+||+|+.+ +.+..+++.+++...++. |++|||++|.|
T Consensus 100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~SA~~g~g 174 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAAWLTDARTL----ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELM-FLETSALTGEN 174 (200)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH----TCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEECTTTCTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEeCCCCCC
Confidence 999999999999999999999988776 346799999999999976 677788899999998875 99999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy14768 397 IEDSMNFLVDRIICSK 412 (452)
Q Consensus 397 v~~lf~~i~~~i~~~~ 412 (452)
|+++|+++++.+.+..
T Consensus 175 i~~l~~~l~~~i~~~~ 190 (200)
T 2o52_A 175 VEEAFLKCARTILNKI 190 (200)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987643
No 38
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.95 E-value=3.6e-27 Score=210.00 Aligned_cols=165 Identities=22% Similarity=0.258 Sum_probs=131.8
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh-hhhhhhcCCCE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC-MSRVYYQNSDG 318 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~-~~~~~i~~ad~ 318 (452)
.+||+++|++|||||||+++|++..+.....++.+.+.....+.+ ++..+.+.+|||+|++.+.. ++..+++.+|+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~ 78 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMV---DKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDA 78 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEE---TTEEEEEEEECCCCC--------CHHHHHCSE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEE---CCeEEEEEEEECCCccccchhhhhhhhccCCE
Confidence 378999999999999999999987666666666777777777777 88899999999999998876 67788999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|+|||++++.+|+.+..|+..+.... ...++|++||+||+|+.+ +.+..+++.++++.+++. |+++||++|.|+
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v 154 (169)
T 3q85_A 79 FLIVFSVTDRRSFSKVPETLLRLRAGR---PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIETSAALHHNT 154 (169)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS---TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSH
T ss_pred EEEEEECCChHHHHHHHHHHHHHHhcc---cCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCc-EEEecCccCCCH
Confidence 999999999999999999999887762 234799999999999986 788899999999999985 999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy14768 398 EDSMNFLVDRIICS 411 (452)
Q Consensus 398 ~~lf~~i~~~i~~~ 411 (452)
+++|+++++.+...
T Consensus 155 ~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 155 RELFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
No 39
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.95 E-value=6e-27 Score=214.28 Aligned_cols=167 Identities=26% Similarity=0.472 Sum_probs=148.8
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|.+|+|||||+++|+++.+...+.+|++.++.. .+.+ ++..+.+.+|||+|+++|..++..+++++|
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 96 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKY---KNEEFILHLWDTAGQEEYDRLRPLSYADSD 96 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEE---TTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEE---CCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence 346899999999999999999999998888888998877654 4555 888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHH-HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHHHcCCCEEEEecCCC
Q psy14768 318 GCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCHQYNFMSWIEVSSKE 393 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~-~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~~~~~~~~~evSAkt 393 (452)
++|+|||++++.+|+++ ..|+..+... ..++|++||+||+|+.+ +.+..+++.++++.+++..|+++||++
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 171 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKHY-----IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVA 171 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHH-----CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCC
Confidence 99999999999999997 6788888765 35799999999999975 678889999999999987799999999
Q ss_pred CccHHHHHHHHHHHHHHhhh
Q psy14768 394 HLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 394 g~nv~~lf~~i~~~i~~~~~ 413 (452)
|.||+++|+++++.+.+.+.
T Consensus 172 ~~gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 172 KIGLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp TBSHHHHHHHHHHHHHCSCC
T ss_pred CCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999876543
No 40
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=6.4e-27 Score=213.32 Aligned_cols=168 Identities=33% Similarity=0.584 Sum_probs=151.1
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++|+++.+...+.++++.++....+.+ ++..+.+.||||+|++.|..++..+++.+|+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV---DGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE---TTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEE---CCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 4589999999999999999999998888888899998888888777 8888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
+|+|||++++.+++.+..|+..+.... ...++|++||+||+|+.++.+..+++.+++...++. |+++||+++.||+
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 166 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETYC---TRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSML-FIEASAKTCDGVQ 166 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTCC---SCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc---CcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCE-EEEecCCCCCCHH
Confidence 999999999999999999998887652 235799999999999976777888899999998876 9999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q psy14768 399 DSMNFLVDRIICSKR 413 (452)
Q Consensus 399 ~lf~~i~~~i~~~~~ 413 (452)
++|+++++.+.+...
T Consensus 167 ~l~~~l~~~~~~~~~ 181 (195)
T 1x3s_A 167 CAFEELVEKIIQTPG 181 (195)
T ss_dssp HHHHHHHHHHHTSGG
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999999876543
No 41
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.95 E-value=2.2e-27 Score=213.20 Aligned_cols=169 Identities=29% Similarity=0.431 Sum_probs=146.7
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCC-eeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG-RPVKLQIWDIAGQDRYICMSRVYYQNS 316 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~-~~~~l~l~DtaG~e~~~~~~~~~i~~a 316 (452)
...++|+++|++|+|||||+++|+++.+...+.+|++.++....+.+ ++ ..+.+.+|||+|++.|..++..+++++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 80 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITL---PGNLNVTLQIWDIGGQTIGGKMLDKYIYGA 80 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEE---TTTEEEEEEEEECTTCCTTCTTHHHHHTTC
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEe---CCCCEEEEEEEECCCCccccchhhHHHhhC
Confidence 34689999999999999999999998888778889988888888777 55 678999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCC
Q psy14768 317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEH 394 (452)
Q Consensus 317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg 394 (452)
|++|+|||++++.+|+.+..|+..+...... ....| ++||+||+|+.+ +.+..+++.++++.+++. ++++||++|
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~ 157 (178)
T 2hxs_A 81 QGVLLVYDITNYQSFENLEDWYTVVKKVSEE--SETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFS-SHFVSAKTG 157 (178)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHHH--HTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEEECTTTC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcc--cCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCc-EEEEeCCCC
Confidence 9999999999999999999999888764210 11345 899999999976 677888999999998875 999999999
Q ss_pred ccHHHHHHHHHHHHHHhh
Q psy14768 395 LMIEDSMNFLVDRIICSK 412 (452)
Q Consensus 395 ~nv~~lf~~i~~~i~~~~ 412 (452)
.||+++|+++++.+.+.+
T Consensus 158 ~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 158 DSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp TTHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHhhh
Confidence 999999999999886543
No 42
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.95 E-value=3.4e-27 Score=217.49 Aligned_cols=169 Identities=23% Similarity=0.423 Sum_probs=143.0
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|.+|||||||+++|+++.+...+.++++..+ ...+.. ++..+.+.||||+|++.|..++..+++.+|
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 97 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTL---GKDEFHLHLVDTAGQDEYSILPYSFIIGVH 97 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC-------CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEE---CCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence 3468999999999999999999999988888888888776 445554 677899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM 396 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n 396 (452)
++|+|||+++..+|+.+..|+..+.... ...++|++||+||+|+.+ +.+..+++..++..+++. |+++||++|.|
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~ 173 (201)
T 3oes_A 98 GYVLVYSVTSLHSFQVIESLYQKLHEGH---GKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGAT-FMESSARENQL 173 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHC--------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECCTTCHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCe-EEEEeCCCCCC
Confidence 9999999999999999999999887652 335689999999999986 778889999999999985 99999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy14768 397 IEDSMNFLVDRIICSKRM 414 (452)
Q Consensus 397 v~~lf~~i~~~i~~~~~~ 414 (452)
|+++|+++++.+.+.+..
T Consensus 174 v~~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 174 TQGIFTKVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 999999999998876543
No 43
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.94 E-value=5.2e-27 Score=211.08 Aligned_cols=172 Identities=25% Similarity=0.539 Sum_probs=136.9
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecC-CeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-GRPVKLQIWDIAGQDRYICMSRVYYQNS 316 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~-~~~~~l~l~DtaG~e~~~~~~~~~i~~a 316 (452)
...++|+++|.+|+|||||+++++++.+...+.++++.++....+.+ + +..+.+.+|||+|++.|..++..+++.+
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 82 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTV---DGDKVATMQVWDTAGQERFQSLGVAFYRGA 82 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECC---SSSCCEEEEEECCC----------CCSTTC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEE---cCCcEEEEEEEECCCChHhhhhhHHHhhcC
Confidence 34689999999999999999999998888888899998888887776 5 5678999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--CcccHHHHHHHHHHcCCCEEEEecCCCC
Q psy14768 317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--RQVEINEIEAVCHQYNFMSWIEVSSKEH 394 (452)
Q Consensus 317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--~~~~~e~~~~~~~~~~~~~~~evSAktg 394 (452)
|++|+|||++++.+++.+..|+..+..........++|++||+||+|+.+ +.+..+++.+++......+|+++||++|
T Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (182)
T 1ky3_A 83 DCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNA 162 (182)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTT
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCC
Confidence 99999999999999999999999887764322336799999999999965 5577888999988655555999999999
Q ss_pred ccHHHHHHHHHHHHHHhh
Q psy14768 395 LMIEDSMNFLVDRIICSK 412 (452)
Q Consensus 395 ~nv~~lf~~i~~~i~~~~ 412 (452)
.||+++|+++.+.+.+.+
T Consensus 163 ~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 163 INVDTAFEEIARSALQQN 180 (182)
T ss_dssp BSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhh
Confidence 999999999999887543
No 44
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=3.9e-27 Score=209.28 Aligned_cols=161 Identities=28% Similarity=0.532 Sum_probs=145.7
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.++|+++|.+|+|||||+++++++.+...+.++++.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 79 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTI---NEHTVKFEIWDTAGQERFASLAPXYYRNAQAA 79 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE---TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE---CCEEEEEEEEECCCChhhhhhhhhhhccCcEE
Confidence 479999999999999999999998888888899998888877777 88889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC----CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD----RQVEINEIEAVCHQYNFMSWIEVSSKEHL 395 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~----~~~~~e~~~~~~~~~~~~~~~evSAktg~ 395 (452)
|+|||++++.+++.+..|+..+... ...++|++||+||+|+.+ +++..++.++++...++. |+++||++|.
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~ 154 (170)
T 1ek0_A 80 LVVYDVTKPQSFIKARHWVKELHEQ----ASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLL-FFETSAKTGE 154 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCE-EEECCTTTCT
T ss_pred EEEEecCChHHHHHHHHHHHHHHHh----cCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCC
Confidence 9999999999999999999988876 356799999999999964 567788888999988875 9999999999
Q ss_pred cHHHHHHHHHHHH
Q psy14768 396 MIEDSMNFLVDRI 408 (452)
Q Consensus 396 nv~~lf~~i~~~i 408 (452)
|++++|+++.+.+
T Consensus 155 gi~~l~~~l~~~i 167 (170)
T 1ek0_A 155 NVNDVFLGIGEKI 167 (170)
T ss_dssp THHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998754
No 45
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.94 E-value=1.1e-26 Score=208.95 Aligned_cols=166 Identities=19% Similarity=0.290 Sum_probs=138.6
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...+||+++|++|||||||+++|+++.+.. +.+|++..+ ...+.+ ++..+.+.+|||+|+++ ..+++++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~---~~~~~~l~i~Dt~G~~~-----~~~~~~~d 74 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLV---DGQTHLVLIREEAGAPD-----AKFSGWAD 74 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEE---TTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEE---CCEEEEEEEEECCCCch-----hHHHHhCC
Confidence 346899999999999999999999988776 678877544 556666 88889999999999986 45788999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHHHcCCCEEEEecCCCC
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCHQYNFMSWIEVSSKEH 394 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~~~~~~~~~evSAktg 394 (452)
++|+|||++++.+|+.+..|+..+..... ....++|++||+||+|+.+ +.+..+++++++..++..+|+++||++|
T Consensus 75 ~~ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (178)
T 2iwr_A 75 AVIFVFSLEDENSFQAVSRLHGQLSSLRG-EGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYG 153 (178)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHC-SSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEecccc
Confidence 99999999999999999998776655421 1235799999999999942 6788899999998875556999999999
Q ss_pred ccHHHHHHHHHHHHHHhhhh
Q psy14768 395 LMIEDSMNFLVDRIICSKRM 414 (452)
Q Consensus 395 ~nv~~lf~~i~~~i~~~~~~ 414 (452)
.||+++|+++++.+.+.+..
T Consensus 154 ~~i~~lf~~l~~~~~~~~~~ 173 (178)
T 2iwr_A 154 LNVDRVFQEVAQKVVTLRKQ 173 (178)
T ss_dssp BTHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhh
Confidence 99999999999998876543
No 46
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.94 E-value=1.2e-26 Score=210.84 Aligned_cols=169 Identities=29% Similarity=0.527 Sum_probs=148.5
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeE-EEEEEeeecCCe---------eEEEEEEecCCcchhhh
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS-TKLLSHKKYGGR---------PVKLQIWDIAGQDRYIC 307 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~-~~~i~~~~~~~~---------~~~l~l~DtaG~e~~~~ 307 (452)
...++|+++|.+|+|||||+++|++..+...+.++++.++. ...+.. ++. .+.+.+|||+|++.|..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 85 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYR---ANGPDGAVGRGQRIHLQLWDTAGLERFRS 85 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEEC---TTSCCCSSCCCEEEEEEEEEECCSGGGHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEe---cCCcccccccCcEEEEEEEeCCCcHHHHH
Confidence 34689999999999999999999998888888899998887 555555 554 78999999999999999
Q ss_pred hhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEE
Q psy14768 308 MSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSW 386 (452)
Q Consensus 308 ~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~ 386 (452)
++..+++++|++|+|||++++.+++.+..|+..+.... ...++|++||+||+|+.+ +.+..+++++++..+++. +
T Consensus 86 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~ 161 (195)
T 3bc1_A 86 LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA---YSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIP-Y 161 (195)
T ss_dssp HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS---SSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-E
T ss_pred HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCC-E
Confidence 99999999999999999999999999999999887762 225799999999999976 677888999999999886 9
Q ss_pred EEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 387 IEVSSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 387 ~evSAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
+++||++|.||+++|++|.+.+.+...
T Consensus 162 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 188 (195)
T 3bc1_A 162 FETSAANGTNISHAIEMLLDLIMKRME 188 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999876543
No 47
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=4.1e-27 Score=215.37 Aligned_cols=165 Identities=30% Similarity=0.552 Sum_probs=148.5
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|.+|+|||||+++|+++.+...+.++.+.++....+.+ ++..+.+.||||+|+++|..++..+++.+|
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPC---GNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEEC---SSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEe---CCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence 34689999999999999999999998888788899998888777777 778899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM 396 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n 396 (452)
++|+|||++++.+|+.+..|+..+... ...++|++||+||+|+.+ +.+..++++++++.+++. |++|||++|.|
T Consensus 98 ~iilV~d~~~~~s~~~~~~~~~~i~~~----~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~g 172 (192)
T 2fg5_A 98 AAVIVYDITKQDSFYTLKKWVKELKEH----GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAI-VVETSAKNAIN 172 (192)
T ss_dssp EEEEEEETTCTHHHHHHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCE-EEECBTTTTBS
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCcC
Confidence 999999999999999999999998876 446799999999999976 677888999999998875 99999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy14768 397 IEDSMNFLVDRIIC 410 (452)
Q Consensus 397 v~~lf~~i~~~i~~ 410 (452)
|+++|+++.+.+.+
T Consensus 173 i~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 173 IEELFQGISRQIPP 186 (192)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887643
No 48
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=6.4e-27 Score=218.51 Aligned_cols=167 Identities=20% Similarity=0.320 Sum_probs=138.5
Q ss_pred CCcccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch-hhhhhhhhhcC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR-YICMSRVYYQN 315 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~-~~~~~~~~i~~ 315 (452)
...+||+++|++|||||||+++|++... +....++++.++....+.+ ++..+.+.+|||+|++. +..+...+++.
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~---~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV---DGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEE---TTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEE---CCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 3458999999999999999999996332 2333456888887777777 88899999999999987 55667778999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCC
Q psy14768 316 SDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEH 394 (452)
Q Consensus 316 ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg 394 (452)
+|++|+|||+++..+|+.+..|...+.... ...++|+|||+||+|+.+ +++..++.+.++..+++. |++|||++|
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~---~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~-~~e~SAk~g 187 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRAR---QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCK-FIETSAAVQ 187 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSG---GGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHh---CCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCE-EEEEeCCCC
Confidence 999999999999999999999988776531 234699999999999976 677888888888888875 999999999
Q ss_pred ccHHHHHHHHHHHHHHh
Q psy14768 395 LMIEDSMNFLVDRIICS 411 (452)
Q Consensus 395 ~nv~~lf~~i~~~i~~~ 411 (452)
.||+++|+++++.+...
T Consensus 188 ~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 188 HNVKELFEGIVRQVRLR 204 (211)
T ss_dssp BSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999988543
No 49
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.94 E-value=4.7e-27 Score=214.36 Aligned_cols=166 Identities=20% Similarity=0.321 Sum_probs=141.0
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...+||+++|.+|||||||+++|+++.+...+.+|++.++ ...+.+ ++..+.+.||||+|+++|..+ ..+++.+|
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~ 93 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETV---DHQPVHLRVMDTADLDTPRNC-ERYLNWAH 93 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE---TTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEE---CCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence 4468999999999999999999999888888889988776 344555 788899999999999998875 67999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecC-CCCc
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSS-KEHL 395 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSA-ktg~ 395 (452)
++|+|||+++..+|+.+..|+..+...... ...++|++||+||+|+.+ +++..+++.+++..+++. |++||| ++|.
T Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~g~ 171 (187)
T 3c5c_A 94 AFLVVYSVDSRQSFDSSSSYLELLALHAKE-TQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCL-FFEVSACLDFE 171 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHHH-HCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECCSSSCSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCc-EEEEeecCccc
Confidence 999999999999999999999988765210 125799999999999976 778889999999999985 999999 8999
Q ss_pred cHHHHHHHHHHHHHH
Q psy14768 396 MIEDSMNFLVDRIIC 410 (452)
Q Consensus 396 nv~~lf~~i~~~i~~ 410 (452)
||+++|+++++.+.+
T Consensus 172 gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 172 HVQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhh
Confidence 999999999988753
No 50
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.94 E-value=4.5e-27 Score=208.74 Aligned_cols=163 Identities=27% Similarity=0.624 Sum_probs=148.3
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++++++.+...+.++++.++....+.+ ++..+.+.+|||+|++.+..++..+++.+|+
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 80 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQV---NDEDVRLMLWDTAGQEEFDAITKAYYRGAQA 80 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEE---TTEEEEEEEECCTTGGGTTCCCHHHHTTCCE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEE---CCEEEEEEEEcCCCcHhHHHHHHHHhcCCCE
Confidence 4689999999999999999999998888888899998888888877 8888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|+|||++++.+++.+..|+..+.... .++|+++|+||+|+.+ +++..++++++++.+++. ++++||+++.|+
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i 154 (168)
T 1z2a_A 81 CVLVFSTTDRESFEAISSWREKVVAEV-----GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLR-FYRTSVKEDLNV 154 (168)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHH-----CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECBTTTTBSS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEecCCCCCH
Confidence 999999999999999999999887762 5689999999999976 677788999999999885 999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy14768 398 EDSMNFLVDRIIC 410 (452)
Q Consensus 398 ~~lf~~i~~~i~~ 410 (452)
+++|+++.+.+.+
T Consensus 155 ~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 155 SEVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988763
No 51
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=207.58 Aligned_cols=166 Identities=22% Similarity=0.349 Sum_probs=132.8
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch--hhhhhhhhhcCC
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR--YICMSRVYYQNS 316 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~--~~~~~~~~i~~a 316 (452)
..++|+++|++|||||||+++|++..+...+ ++++.++....+.+ ++..+.+.+|||+|++. +..++..+++.+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 78 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTV---DGEDTTLVVVDTWEAEKLDKSWSQESCLQGG 78 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEE---TTEEEEEEEECCC-------CHHHHHTTTSC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEE---CCEEEEEEEEecCCCCccchhhhHHhhcccC
Confidence 3589999999999999999999987765443 45666776667766 88889999999999987 566778889999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768 317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL 395 (452)
Q Consensus 317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~ 395 (452)
|++|+|||++++.+|+.+..|+..+.... ...++|++||+||+|+.+ +++..++++.++..+++. |++|||++|.
T Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~g~ 154 (175)
T 2nzj_A 79 SAYVIVYSIADRGSFESASELRIQLRRTH---QADHVPIILVGNKADLARCREVSVEEGRACAVVFDCK-FIETSATLQH 154 (175)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHCC-------CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSE-EEECBTTTTB
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhh---ccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCe-EEEEecCCCC
Confidence 99999999999999999999988887642 234699999999999987 677888888999888875 9999999999
Q ss_pred cHHHHHHHHHHHHHHhh
Q psy14768 396 MIEDSMNFLVDRIICSK 412 (452)
Q Consensus 396 nv~~lf~~i~~~i~~~~ 412 (452)
||+++|+++++.+...+
T Consensus 155 gi~~l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 155 NVAELFEGVVRQLRLRR 171 (175)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999886543
No 52
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.94 E-value=9.3e-27 Score=206.46 Aligned_cols=163 Identities=24% Similarity=0.476 Sum_probs=143.1
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.++|+++|.+|+|||||+++++++.+...+.++++..+. ..+.+ ++..+.+.+|||+|+++|..++..+++++|++
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~---~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 78 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEV---DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGF 78 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEES---SSCEEEEEEEEECSSCSSTTHHHHHHHHCSEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEE---CCEEEEEEEEECCChHHHHHHHHHHhccCCEE
Confidence 579999999999999999999998888888888886653 44555 77889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
|+|||++++.+|+.+..|+..+.... ...++|++||+||+|+.+ +.+..+++.++++.++..+|+++||++|.|++
T Consensus 79 i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (167)
T 1c1y_A 79 ALVYSITAQSTFNDLQDLREQILRVK---DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVN 155 (167)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH---CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhh---CcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHH
Confidence 99999999999999999988887652 345799999999999976 66778899999999855569999999999999
Q ss_pred HHHHHHHHHHH
Q psy14768 399 DSMNFLVDRII 409 (452)
Q Consensus 399 ~lf~~i~~~i~ 409 (452)
++|+++.+.+.
T Consensus 156 ~l~~~l~~~i~ 166 (167)
T 1c1y_A 156 EIFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998763
No 53
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.94 E-value=5.7e-27 Score=210.22 Aligned_cols=162 Identities=31% Similarity=0.595 Sum_probs=147.0
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.++|+++|.+|+|||||+++++++.+...+.++++.++....+.+ ++..+.+.+|||+|++.|..++..+++++|++
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEE---TTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEE---CCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 589999999999999999999998888888899999888888877 88889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
|+|||++++.+++.+..|+..+... ...++|++||+||+|+.+ +++..++...++...++. |+++||++|.|++
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~ 165 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTE----RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNVK 165 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH----HTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEEEBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCe-EEEEeCCCCCCHH
Confidence 9999999999999999999888776 346799999999999976 677788889999988875 9999999999999
Q ss_pred HHHHHHHHHHH
Q psy14768 399 DSMNFLVDRII 409 (452)
Q Consensus 399 ~lf~~i~~~i~ 409 (452)
++|+++.+.+.
T Consensus 166 ~l~~~l~~~~~ 176 (179)
T 2y8e_A 166 QLFRRVAAALP 176 (179)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 54
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.94 E-value=9.9e-27 Score=214.23 Aligned_cols=169 Identities=25% Similarity=0.371 Sum_probs=111.7
Q ss_pred CcccEEEeeecccCCcceeeecccc--ccccccCCcceeeeEEEEEEeeecCCe--eEEEEEEecCCcchhhhhhhhhhc
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQN--KFLDNYKNTVGVDFSTKLLSHKKYGGR--PVKLQIWDIAGQDRYICMSRVYYQ 314 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~--~~~~~~~~t~~~d~~~~~i~~~~~~~~--~~~l~l~DtaG~e~~~~~~~~~i~ 314 (452)
..++|+++|.+|+|||||+++|+++ .+...+.+|++.++....+.+ ++. .+.+.||||+|++.|..++..+++
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 95 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTI---PDTTVSVELFLLDTAGSDLYKEQISQYWN 95 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEEC---TTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEE---CCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence 3589999999999999999999988 788788889888888777777 666 889999999999999999999999
Q ss_pred CCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCC---CCCcEEEEEECCCCCC--CcccHHHHHHHHHHcCCCEEEEe
Q psy14768 315 NSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNG---AMLPCLLLASKCDLPD--RQVEINEIEAVCHQYNFMSWIEV 389 (452)
Q Consensus 315 ~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~---~~~piilV~NK~Dl~~--~~~~~e~~~~~~~~~~~~~~~ev 389 (452)
++|++|+|||++++.+|+.+..|+..+... .. .++|++||+||+|+.+ +.+..+++.++++.+++. |+++
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~-~~~~ 170 (208)
T 2yc2_C 96 GVYYAILVFDVSSMESFESCKAWFELLKSA----RPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLD-FFDV 170 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHH----CSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCE-EEEC
T ss_pred hCcEEEEEEECCCHHHHHHHHHHHHHHHHh----hcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCE-EEEe
Confidence 999999999999999999999999999876 33 5799999999999975 567788999999999865 9999
Q ss_pred cCCC-CccHHHHHHHHHHHHHHhhhhh
Q psy14768 390 SSKE-HLMIEDSMNFLVDRIICSKRME 415 (452)
Q Consensus 390 SAkt-g~nv~~lf~~i~~~i~~~~~~~ 415 (452)
||++ |.||+++|+++++.+.+.....
T Consensus 171 Sa~~~~~gi~~l~~~i~~~~~~~~~~~ 197 (208)
T 2yc2_C 171 SANPPGKDADAPFLSIATTFYRNYEDK 197 (208)
T ss_dssp CC-------CHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHHHHHHHHHHhh
Confidence 9999 9999999999999887665443
No 55
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.94 E-value=1e-26 Score=211.85 Aligned_cols=164 Identities=30% Similarity=0.550 Sum_probs=145.6
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh-hhhhhhhcCCC
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI-CMSRVYYQNSD 317 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~-~~~~~~i~~ad 317 (452)
..++|+++|.+|+|||||+++|+++.+...+.++++.++....+.+ ++..+.+.||||+|+++|. .++..+++++|
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI---DGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEE---TTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEE---CCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 4589999999999999999999998888888899998888888877 8888999999999999998 88899999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCC--
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEH-- 394 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg-- 394 (452)
++|+|||++++.+|+.+..|+..+.... ...++|++||+||+|+.+ +++..+++++++..+++. |+++||+++
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~ 171 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHL---LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMP-LFETSAKNPND 171 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EEECCSSSGGG
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCE-EEEEeCCcCCc
Confidence 9999999999999999999999887762 246799999999999976 677888999999999886 999999999
Q ss_pred -ccHHHHHHHHHHHHH
Q psy14768 395 -LMIEDSMNFLVDRII 409 (452)
Q Consensus 395 -~nv~~lf~~i~~~i~ 409 (452)
.||+++|+++++.+.
T Consensus 172 ~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 172 NDHVEAIFMTLAHKLK 187 (189)
T ss_dssp GSCHHHHHHHHC----
T ss_pred ccCHHHHHHHHHHHHh
Confidence 999999999988764
No 56
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.94 E-value=1e-26 Score=211.06 Aligned_cols=164 Identities=24% Similarity=0.408 Sum_probs=143.3
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|++|||||||+++|+++.+...+.++++.++. ..+.+ ++..+.+.+|||+|++.|..++..+++++|
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 80 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEI---DTQRIELSLWDTSGSPYYDNVRPLSYPDSD 80 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC---SSCEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEE---CCEEEEEEEEECCCChhhhhhHHhhcCCCc
Confidence 34689999999999999999999998888888888887663 44555 778899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHH-HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCC
Q psy14768 318 GCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNF 383 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~-~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~ 383 (452)
++|+|||++++.+|+.+ ..|+..+... ..++|++||+||+|+.+ +.+..+++.++++.++.
T Consensus 81 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (184)
T 1m7b_A 81 AVLICFDISRPETLDSVLKKWKGEIQEF-----CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGA 155 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHH-----CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHH-----CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCC
Confidence 99999999999999999 6798888765 25799999999999963 45778889999999986
Q ss_pred CEEEEecCC-CCccHHHHHHHHHHHHHH
Q psy14768 384 MSWIEVSSK-EHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 384 ~~~~evSAk-tg~nv~~lf~~i~~~i~~ 410 (452)
.+|++|||+ ++.||+++|+.+++.+++
T Consensus 156 ~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 156 ATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp SEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred cEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 679999999 589999999999998764
No 57
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.94 E-value=3e-26 Score=209.57 Aligned_cols=163 Identities=28% Similarity=0.549 Sum_probs=144.8
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCee---------------------------
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP--------------------------- 291 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~--------------------------- 291 (452)
..++|+++|.+|+|||||+++|++..+...+.++++.++....+.+ ++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNL---NDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEET---TC-----------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEe---cCccccccccccccccccccccccccccccc
Confidence 4689999999999999999999998888888899998888877776 5544
Q ss_pred ----------EEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEEC
Q psy14768 292 ----------VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361 (452)
Q Consensus 292 ----------~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK 361 (452)
+.+.||||+|++.|..++..+++.+|++|+|||++++.+++++..|+..+... ..+|+++|+||
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~------~~~piilv~NK 156 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS------SNYIIILVANK 156 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH------SCCEEEEEEEC
T ss_pred cccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh------CCCcEEEEEEC
Confidence 88999999999999999999999999999999999999999999999988876 23999999999
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHh
Q psy14768 362 CDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 362 ~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i~~~ 411 (452)
+|+.++++..+++++++...++. |+++||++|.|++++|+++.+.+.+.
T Consensus 157 ~D~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 157 IDKNKFQVDILEVQKYAQDNNLL-FIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp TTCC-CCSCHHHHHHHHHHTTCE-EEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCcccccCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 99444778889999999998875 99999999999999999999988754
No 58
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.94 E-value=1.6e-26 Score=212.55 Aligned_cols=167 Identities=25% Similarity=0.420 Sum_probs=138.5
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|.+|||||||+++|+++.+...+.+|++..+ ...+.. ++..+.+.+|||+|+++|..++..+++++|
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSV---DGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEE---TTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEE---CCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 3468999999999999999999999888888888887555 445555 788899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCC
Q psy14768 318 GCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNF 383 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~ 383 (452)
++|+|||++++.+|+++. .|+..+... ..++|++||+||+|+.+ +.+..+++..++..++.
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCH-----CPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKA 168 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHH-----CSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCC
Confidence 999999999999999997 698888775 24799999999999863 45678889999999998
Q ss_pred CEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 384 MSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 384 ~~~~evSAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
.+|++|||++|.||+++|+++++.+.+.+.
T Consensus 169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 169 ASYIECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 669999999999999999999999876544
No 59
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.94 E-value=5.6e-27 Score=218.34 Aligned_cols=169 Identities=31% Similarity=0.567 Sum_probs=147.8
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCe----------eEEEEEEecCCcchhhh
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR----------PVKLQIWDIAGQDRYIC 307 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~----------~~~l~l~DtaG~e~~~~ 307 (452)
...++|+++|.+|+|||||+++|++..+...+.++++.++....+.+ ++. .+.+.||||+|+++|..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 99 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVY---NAQGPNGSSGKAFKVHLQLWDTAGQERFRS 99 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEE---EC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEE---CCccccccccCceeEEEEEEECCCcHhHHh
Confidence 34589999999999999999999998888888888888887777766 444 78899999999999999
Q ss_pred hhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEE
Q psy14768 308 MSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSW 386 (452)
Q Consensus 308 ~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~ 386 (452)
++..+++.+|++|+|||+++..+|+.+..|+..+.... ...++|++||+||+|+.+ +.+..+++++++..+++. |
T Consensus 100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~---~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~ 175 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA---YCENPDIVLIGNKADLPDQREVNERQARELADKYGIP-Y 175 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCC---TTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-E
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc---CcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCc-E
Confidence 99999999999999999999999999999988776541 125799999999999976 677888999999999986 9
Q ss_pred EEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 387 IEVSSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 387 ~evSAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
++|||+++.||+++|+++++.+.+...
T Consensus 176 ~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 176 FETSAATGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999876533
No 60
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=2e-26 Score=213.47 Aligned_cols=165 Identities=31% Similarity=0.571 Sum_probs=149.4
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++|++..+...+.++++.++....+.+ ++..+.+.||||+|++.|..++..+++.+|+
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI---NGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEE---TTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEE---CCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 3589999999999999999999998888888899999988888877 8888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
+|+|||++++.+|+.+..|+..+... ...++|++||+||+|+.++.+..+++.+++..+++. |+++||++|.||+
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 170 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEH----ANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESSAKNDDNVN 170 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH----TTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCC-EEECBTTTTBSSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence 99999999999999999999988876 345799999999999965777888899999999886 9999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy14768 399 DSMNFLVDRIICS 411 (452)
Q Consensus 399 ~lf~~i~~~i~~~ 411 (452)
++|+++.+.+.+.
T Consensus 171 ~l~~~l~~~~~~~ 183 (213)
T 3cph_A 171 EIFFTLAKLIQEK 183 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
No 61
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.94 E-value=1.9e-26 Score=204.72 Aligned_cols=163 Identities=22% Similarity=0.325 Sum_probs=119.8
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.+||+++|.+|||||||++++.+..+. ...++.+..+ ...+.+ ++..+.+.+|||+|++.|..++..+++.+|++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 76 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVV---DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAY 76 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEE---TTEEEEEEEEECC---------------CCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEE---CCEEEEEEEEECCCCccchhhhhhhhhhCCEE
Confidence 479999999999999999999975543 2234444444 344555 88899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
|+|||++++.+|+.+..|+..+.... ...++|++||+||+|+.+ +.+..++.+.++...+.. |+++||++|.|++
T Consensus 77 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 152 (166)
T 3q72_A 77 VIVYSVTDKGSFEKASELRVQLRRAR---QTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCK-FIETSAALHHNVQ 152 (166)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC------CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCE-EEECBGGGTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCc-EEEeccCCCCCHH
Confidence 99999999999999999988887652 345799999999999987 778889999999999875 9999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy14768 399 DSMNFLVDRIICS 411 (452)
Q Consensus 399 ~lf~~i~~~i~~~ 411 (452)
++|+++.+.+...
T Consensus 153 ~l~~~l~~~~~~~ 165 (166)
T 3q72_A 153 ALFEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 62
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.94 E-value=6e-27 Score=215.50 Aligned_cols=163 Identities=29% Similarity=0.583 Sum_probs=136.5
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++|+++.+...+.++++.++....+.+ ++..+.+.||||+|++.|..++..+++.+|+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIV---DGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEE---TTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEE---CCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 4689999999999999999999998888788888888888777777 8888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC------C-CcccHHHHHHHHHHcCCCEEEEecC
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP------D-RQVEINEIEAVCHQYNFMSWIEVSS 391 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~------~-~~~~~e~~~~~~~~~~~~~~~evSA 391 (452)
+|+|||++++.+++.+..|+..+... ...++|++||+||+|+. . +.+..++++.++...++. |++|||
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~SA 178 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDA----AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGAL-FCETSA 178 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH----C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCE-EEECCT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHh----cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCe-EEEeeC
Confidence 99999999999999999999988776 34579999999999995 2 667788899999998875 999999
Q ss_pred CCCccHHHHHHHHHHHHH
Q psy14768 392 KEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 392 ktg~nv~~lf~~i~~~i~ 409 (452)
++|.||+++|+++++.+.
T Consensus 179 ~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 179 KDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp TTCTTHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999998775
No 63
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.94 E-value=2e-26 Score=204.09 Aligned_cols=164 Identities=25% Similarity=0.489 Sum_probs=141.2
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++++++.+...+.++++..+. ..+.. ++..+.+.+|||+|++++..++..+++.+|+
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~---~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 78 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVL---DGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 78 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEE---TTEEEEEEEEECCC---CHHHHHHHHHHCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEE---CCEEEEEEEEECCCcchhHHHHHHHhhcCCE
Confidence 3589999999999999999999998888788788776553 34455 7888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+|+|||++++.+++.+..|+..+.... ...++|++||+||+|+.+ +++..+++.+++...++. ++++||++|.|+
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 154 (168)
T 1u8z_A 79 FLCVFSITEMESFAATADFREQILRVK---EDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVN-YVETSAKTRANV 154 (168)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHH---CCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECCTTTCTTH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeCCCCCCCH
Confidence 999999999999999999998887763 235799999999999976 677888999999998875 999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy14768 398 EDSMNFLVDRIIC 410 (452)
Q Consensus 398 ~~lf~~i~~~i~~ 410 (452)
+++|+++++.+.+
T Consensus 155 ~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 155 DKVFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998753
No 64
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.94 E-value=1.6e-26 Score=214.53 Aligned_cols=164 Identities=24% Similarity=0.410 Sum_probs=143.8
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...+||+++|++|||||||+++|+++.+...+.+|++.++ ...+.+ ++..+.+.||||+|++.|..++..+++++|
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 101 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEI---DTQRIELSLWDTSGSPYYDNVRPLSYPDSD 101 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEES---SSSEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEE---CCEEEEEEEEeCCCcHhhhHHHHhhccCCC
Confidence 4568999999999999999999999988888888888776 344555 778899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHH-HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCC
Q psy14768 318 GCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNF 383 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~-~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~ 383 (452)
++|+|||++++.+|+.+ ..|+..+... ..++|++||+||+|+.+ +.+..++++++++.++.
T Consensus 102 ~~ilv~D~~~~~s~~~~~~~~~~~i~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 176 (205)
T 1gwn_A 102 AVLICFDISRPETLDSVLKKWKGEIQEF-----CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGA 176 (205)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHH-----CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHH-----CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCC
Confidence 99999999999999999 6898888775 25699999999999963 45778889999999986
Q ss_pred CEEEEecCC-CCccHHHHHHHHHHHHHH
Q psy14768 384 MSWIEVSSK-EHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 384 ~~~~evSAk-tg~nv~~lf~~i~~~i~~ 410 (452)
..|++|||+ ++.||+++|+.+++.+++
T Consensus 177 ~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 177 ATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 669999999 689999999999998874
No 65
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.94 E-value=2e-26 Score=211.48 Aligned_cols=168 Identities=20% Similarity=0.339 Sum_probs=136.5
Q ss_pred CcccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch-hhhhhhhhhcCC
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR-YICMSRVYYQNS 316 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~-~~~~~~~~i~~a 316 (452)
..+||+++|++|||||||+|+|++.. ......++++.++....+.+ ++..+.+.+|||+|++. +..++..+++.+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~ 81 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMV---DGESATIILLDMWENKGENEWLHDHCMQVG 81 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEE---TTEEEEEEEECCCCC----CTTGGGHHHHC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEE---CCeEEEEEEEEeccCcchhhhHHHhhcccC
Confidence 35899999999999999999999632 22333456777887777777 88899999999999876 556777889999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768 317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL 395 (452)
Q Consensus 317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~ 395 (452)
|++|+|||+++..||+.+..|...+.... ...++|++||+||+|+.+ +.+..++...++..+++. |++|||++|.
T Consensus 82 ~~~i~v~dv~~~~s~~~~~~~~~~l~~~~---~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~-~~e~SA~~g~ 157 (192)
T 2cjw_A 82 DAYLIVYSITDRASFEKASELRIQLRRAR---QTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXK-FIETSAAVQH 157 (192)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHT---TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTB
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCc-eEEeccccCC
Confidence 99999999999999999999988776541 235689999999999976 667788888888888765 9999999999
Q ss_pred cHHHHHHHHHHHHHHhhh
Q psy14768 396 MIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 396 nv~~lf~~i~~~i~~~~~ 413 (452)
||+++|+++++.+.....
T Consensus 158 ~v~~lf~~l~~~~~~~~~ 175 (192)
T 2cjw_A 158 NVKELFEGIVRQVRLRRD 175 (192)
T ss_dssp SHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhhcc
Confidence 999999999998865544
No 66
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.94 E-value=2.4e-26 Score=203.33 Aligned_cols=163 Identities=25% Similarity=0.487 Sum_probs=143.0
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.++|+++|++|+|||||+++++++.+...+.++++..+ ...+.+ ++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~ 78 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEV---DSSPSVLEILDTAGTEQFASMRDLYIKNGQGF 78 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE---TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEE---CCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 57999999999999999999999888877777777444 555556 78888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
++|||++++.+++.+..|+..+.... ...++|+++|+||+|+.+ +++..++..+++..+++. ++++||++|.|++
T Consensus 79 i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 154 (167)
T 1kao_A 79 ILVYSLVNQQSFQDIKPMRDQIIRVK---RYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCP-FMETSAKSKTMVD 154 (167)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHT---TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSC-EEEECTTCHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCC-EEEecCCCCcCHH
Confidence 99999999999999999988887652 335799999999999976 677888899999998886 9999999999999
Q ss_pred HHHHHHHHHHHH
Q psy14768 399 DSMNFLVDRIIC 410 (452)
Q Consensus 399 ~lf~~i~~~i~~ 410 (452)
++|+++.+.+.+
T Consensus 155 ~l~~~l~~~~~~ 166 (167)
T 1kao_A 155 ELFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999988753
No 67
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.94 E-value=2.9e-26 Score=207.07 Aligned_cols=168 Identities=25% Similarity=0.486 Sum_probs=146.5
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|.+|+|||||+++|+++.+...+.++++..+ ...+.. ++..+.+.||||+|++.|..++..+++.+|
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL---DGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEE---TTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEE---CCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence 3468999999999999999999999888888888877655 334455 778889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM 396 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n 396 (452)
++|+|||+++..+|+.+..|+..+.... ...++|++||+||+|+.+ +++..+++.++++.+++. |+++||+++.|
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~g 167 (187)
T 2a9k_A 92 GFLCVFSITEMESFAATADFREQILRVK---EDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETSAKTRAN 167 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHH---CCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeCCCCCCC
Confidence 9999999999999999999998887763 334799999999999976 677888999999999875 99999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy14768 397 IEDSMNFLVDRIICSKR 413 (452)
Q Consensus 397 v~~lf~~i~~~i~~~~~ 413 (452)
|+++|+++.+.+.+.+.
T Consensus 168 i~~l~~~l~~~i~~~~~ 184 (187)
T 2a9k_A 168 VDKVFFDLMREIRARKM 184 (187)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999876543
No 68
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=2.8e-26 Score=209.69 Aligned_cols=163 Identities=23% Similarity=0.424 Sum_probs=143.5
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++|+++.+...+.+|++..+ ...+.+ ++..+.+.+|||+|+++|..++..+++++|+
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 92 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTV---GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 92 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEES---SSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEE---CCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence 358999999999999999999999888888888887665 345555 7778999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCC
Q psy14768 319 CIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFM 384 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~ 384 (452)
+|+|||++++.+|+.+. .|+..+... ..++|++||+||+|+.+ +.+..+++.++++.+++.
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 167 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEY-----APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC 167 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH-----STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCc
Confidence 99999999999999997 798888775 24799999999999975 257788999999999985
Q ss_pred EEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768 385 SWIEVSSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 385 ~~~evSAktg~nv~~lf~~i~~~i~~ 410 (452)
+|++|||++|.||+++|+++++.++.
T Consensus 168 ~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 168 CYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 59999999999999999999988763
No 69
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=9.6e-27 Score=213.05 Aligned_cols=167 Identities=24% Similarity=0.393 Sum_probs=142.5
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|.+|||||||+++|+++.+...+.++++..+. ..+.. ++..+.+.||||+|++.|..++..+++.+|
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 81 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISC---DKSVCTLQITDTTGSHQFPAMQRLSISKGH 81 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEE---TTEEEEEEEEECCGGGSCHHHHHHHHHHCS
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEE---CCEEEEEEEEeCCChHHhHHHHHHhhccCC
Confidence 34689999999999999999999998887777788775543 33444 778889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
++|+|||++++.+|+.+..|+..+..... ...++|++||+||+|+.++.+..+++..++..+++. |+++||++|.||
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 158 (199)
T 2gf0_A 82 AFILVFSVTSKQSLEELGPIYKLIVQIKG--SVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCA-FMETSAKMNYNV 158 (199)
T ss_dssp EEEEEEETTCHHHHHTTHHHHHHHHHHHS--CGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCE-EEECBTTTTBSH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCe-EEEEecCCCCCH
Confidence 99999999999999999888877766421 124689999999999987677788889999998875 999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy14768 398 EDSMNFLVDRIICS 411 (452)
Q Consensus 398 ~~lf~~i~~~i~~~ 411 (452)
+++|+++++.+...
T Consensus 159 ~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 159 KELFQELLTLETRR 172 (199)
T ss_dssp HHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999876543
No 70
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.94 E-value=9e-28 Score=221.02 Aligned_cols=166 Identities=30% Similarity=0.607 Sum_probs=140.3
Q ss_pred CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS 316 (452)
Q Consensus 237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a 316 (452)
....++|+++|.+|||||||+++|+++.+...+.++++.++....+.+ ++..+.+.||||+|++.|..++..+++++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 106 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL---DGKTIKLQIWDTAGQERFRTITSSYYRGA 106 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEE---TTEEEEEEEECCTTCTTCCCCSCC--CCC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEE---CCEEEEEEEEECCCcHhHHHHHHHHhhcC
Confidence 345689999999999999999999999888888899998998888887 88889999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768 317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL 395 (452)
Q Consensus 317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~ 395 (452)
|++|+|||+++..+|+.+..|+..+... ...++|++||+||+|+.+ +.+..+++++++..+++. |+++||++|.
T Consensus 107 d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~vSA~~g~ 181 (199)
T 3l0i_B 107 HGIIVVYDVTDQESFNNVKQWLQEIDRY----ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FLETSAKNAT 181 (199)
T ss_dssp SEEEECC-CCCSHHHHHHHHHHHHHHSC----C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCC-BCCCCC---H
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHh----ccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCe-EEEEECCCCC
Confidence 9999999999999999999999999776 446799999999999976 566667788899998887 9999999999
Q ss_pred cHHHHHHHHHHHHHH
Q psy14768 396 MIEDSMNFLVDRIIC 410 (452)
Q Consensus 396 nv~~lf~~i~~~i~~ 410 (452)
||+++|+++++.+.+
T Consensus 182 gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 182 NVEQSFMTMAAEIKK 196 (199)
T ss_dssp HHHHHHHHHTTTTTT
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999877653
No 71
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.94 E-value=3.2e-26 Score=206.85 Aligned_cols=164 Identities=25% Similarity=0.471 Sum_probs=143.0
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++|+++.+...+.++++..+ ...+.+ ++..+.+.+|||+|+++|..++..+++.+|+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 79 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV---DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 79 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEE---TTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEE---CCEEEEEEEEECCCCHhHHHHHHHhccCCcE
Confidence 458999999999999999999998888888888887555 444555 8888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCC
Q psy14768 319 CIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFM 384 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~ 384 (452)
+|+|||++++.+|+++. .|+..+... ..++|++||+||+|+.+ +.+..+++..++..++..
T Consensus 80 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 154 (186)
T 1mh1_A 80 SLICFSLVSPASFENVRAKWYPEVRHH-----CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 154 (186)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH-----STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred EEEEEECCChhhHHHHHHHHHHHHHHh-----CCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCc
Confidence 99999999999999997 688888775 23799999999999864 356778888999999886
Q ss_pred EEEEecCCCCccHHHHHHHHHHHHHHh
Q psy14768 385 SWIEVSSKEHLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 385 ~~~evSAktg~nv~~lf~~i~~~i~~~ 411 (452)
+|++|||++|.||+++|+++.+.+.+.
T Consensus 155 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 155 KYLECSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred EEEEecCCCccCHHHHHHHHHHHHhcc
Confidence 699999999999999999999988644
No 72
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=5.5e-26 Score=208.39 Aligned_cols=166 Identities=24% Similarity=0.345 Sum_probs=144.7
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|.+|+|||||+++|+++.+...+.++++.++ ...+.+ ++..+.+.+|||+|++. ..++..+++.+|
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d 100 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATI---DDEVVSMEILDTAGQED-TIQREGHMRWGE 100 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE---TTEEEEEEEEECCCCCC-CHHHHHHHHHCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEE---CCEEEEEEEEECCCCCc-ccchhhhhccCC
Confidence 3468999999999999999999999888888888888665 344555 78889999999999988 777888999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCc-
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL- 395 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~- 395 (452)
++|+|||++++.+|+.+..|+..+.... ...++|++||+||+|+.+ +++..+++.+++..+++. |++|||++|.
T Consensus 101 ~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~g~~ 176 (196)
T 2atv_A 101 GFVLVYDITDRGSFEEVLPLKNILDEIK---KPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACA-FYECSACTGEG 176 (196)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHH---TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSE-EEECCTTTCTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhh---CCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCe-EEEECCCcCCc
Confidence 9999999999999999999998887652 345799999999999987 678889999999998875 9999999999
Q ss_pred cHHHHHHHHHHHHHHhh
Q psy14768 396 MIEDSMNFLVDRIICSK 412 (452)
Q Consensus 396 nv~~lf~~i~~~i~~~~ 412 (452)
||+++|+++++.+.+.+
T Consensus 177 gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 177 NITEIFYELCREVRRRR 193 (196)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhc
Confidence 99999999999987654
No 73
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.93 E-value=4.7e-26 Score=212.31 Aligned_cols=166 Identities=24% Similarity=0.476 Sum_probs=124.4
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|.+|||||||+++|+++.+...+.++++..+ ...+.+ ++..+.+.||||+|++.|..++..+++++|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 107 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQV---KGKPVHLHIWDTAGQDDYDRLRPLFYPDAS 107 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEE---TTEEEEEEEEEC---------------CEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEE---CCEEEEEEEEECCCchhhhHHHHHHhccCC
Confidence 3468999999999999999999999888877778876554 344555 788899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCCC-------------cccHHHHHHHHHHcCC
Q psy14768 318 GCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPDR-------------QVEINEIEAVCHQYNF 383 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~-------------~~~~e~~~~~~~~~~~ 383 (452)
++|+|||++++.+|+.+. .|+..+... ..++|++||+||+|+.+. .+..+++.++++.+++
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 182 (214)
T 2j1l_A 108 VLLLCFDVTSPNSFDNIFNRWYPEVNHF-----CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGA 182 (214)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHH-----CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCC
Confidence 999999999999999996 698888775 256999999999999751 5677888999999998
Q ss_pred CEEEEecCCCCccHHHHHHHHHHHHHHhh
Q psy14768 384 MSWIEVSSKEHLMIEDSMNFLVDRIICSK 412 (452)
Q Consensus 384 ~~~~evSAktg~nv~~lf~~i~~~i~~~~ 412 (452)
.+|++|||++|.||+++|+++++.+.+.+
T Consensus 183 ~~~~~~SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 183 VAYLECSARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp SEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 66999999999999999999999988654
No 74
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.93 E-value=4.2e-26 Score=212.55 Aligned_cols=169 Identities=26% Similarity=0.479 Sum_probs=144.7
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|.+|||||||+|+|+++.+...+.++.+.+.....+.. .++..+.+.||||+|++.+..++..++..+|
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLD--DQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEB--TTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEe--CCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 34689999999999999999999998888777888887766665544 1344488999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM 396 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n 396 (452)
++|+|||++++.+++++..|+..+... ...++|++||+||+|+.+ +.+..+++..++...++. |++|||++|.|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~g 161 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAV----VGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYE-YFEISAKTAHN 161 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH----HCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCE-EEEEBTTTTBT
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCc-EEEEecCCCCC
Confidence 999999999999999999999999877 345689999999999987 578888888888888876 99999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy14768 397 IEDSMNFLVDRIICSKR 413 (452)
Q Consensus 397 v~~lf~~i~~~i~~~~~ 413 (452)
|+++|+++++.+.+...
T Consensus 162 v~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 162 FGLPFLHLARIFTGRPD 178 (218)
T ss_dssp TTHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999999876654
No 75
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.93 E-value=1.1e-25 Score=207.46 Aligned_cols=163 Identities=22% Similarity=0.414 Sum_probs=143.6
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..+||+++|.+|+|||||++++.++.+...+.++++.++.. .+.+ ++..+.+.||||+|+++|..++..+++++|+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEV---DGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEE---TTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEE---CCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence 46899999999999999999999988888888888887753 3555 7888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCC
Q psy14768 319 CIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFM 384 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~-~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~ 384 (452)
+|+|||++++.+|+.+ ..|...+... ..++|++||+||+|+.+ +.+..+++.++++.++..
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 174 (201)
T 2gco_A 100 ILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAF 174 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH-----STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCc
Confidence 9999999999999999 6788888765 24699999999999975 236778889999999986
Q ss_pred EEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768 385 SWIEVSSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 385 ~~~evSAktg~nv~~lf~~i~~~i~~ 410 (452)
.|+++||++|.||+++|+++++.+++
T Consensus 175 ~~~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 175 GYLECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 69999999999999999999988764
No 76
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.93 E-value=1.7e-25 Score=203.57 Aligned_cols=167 Identities=28% Similarity=0.539 Sum_probs=135.3
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|||||||+++|+++.+...+.++++..+ ...+.. ++..+.+.||||+|+++|..++..+++.+|+
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI---DGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE---TTEEEEEEEEECCC-----------CTTCSE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEE---CCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 458999999999999999999998888777777776554 345555 7888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
+|+|||+++..+++++..|+..+.... ...++|++||+||+|+.++.+..++++++++.+++. ++++||+++.|++
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 171 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVK---DSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIP-FIETSAKTRQGVE 171 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHH---TCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEECCTTTCTTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHh---CCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCe-EEEEeCCCCCCHH
Confidence 999999999999999999998887652 235699999999999987677888999999999986 9999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q psy14768 399 DSMNFLVDRIICSKR 413 (452)
Q Consensus 399 ~lf~~i~~~i~~~~~ 413 (452)
++|+++++.+.+.+.
T Consensus 172 ~l~~~l~~~~~~~~~ 186 (190)
T 3con_A 172 DAFYTLVREIRQYRM 186 (190)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999876543
No 77
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.93 E-value=2.9e-25 Score=195.92 Aligned_cols=163 Identities=29% Similarity=0.516 Sum_probs=142.5
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.++|+++|.+|+|||||+++++++.+...+.++++..+ ...+.. ++..+.+.+|||+|++++..++..++..+|++
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 78 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVI---DGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 78 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE---TTEEEEEEEEECCCCSSCCHHHHHHHHHCSEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEE---CCEEEEEEEEECCCchhhhHHHHHhhccCCEE
Confidence 47899999999999999999999888777777776544 444555 77889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~ 399 (452)
++|||+++..+++.+..|+..+.... ...++|+++|+||+|+.++....+++.++++.+++. ++++||++|.|+++
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~i~~~~---~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~ 154 (166)
T 2ce2_X 79 LCVFAINNTKSFEDIHQYREQIKRVK---DSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIP-YIETSAKTRQGVED 154 (166)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHH---TCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEEECTTTCTTHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCe-EEEecCCCCCCHHH
Confidence 99999999999999999998887752 234799999999999987667788999999999986 99999999999999
Q ss_pred HHHHHHHHHHH
Q psy14768 400 SMNFLVDRIIC 410 (452)
Q Consensus 400 lf~~i~~~i~~ 410 (452)
+|+++.+.+.+
T Consensus 155 l~~~l~~~~~~ 165 (166)
T 2ce2_X 155 AFYTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 78
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.93 E-value=9e-26 Score=208.85 Aligned_cols=162 Identities=24% Similarity=0.408 Sum_probs=139.6
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|.+|||||||+++|+++.+...+.++++. .....+.+ ++..+.+.||||+|++.|..++..+++++|
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMV---DGKPVNLGLWDTAGLEDYDRLRPLSYPQTD 103 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE-EEEEEEEC---C-CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc-eeEEEEEE---CCEEEEEEEEECCCchhhHHHHHHHhccCC
Confidence 34689999999999999999999998888888888764 44455555 788899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C------------cccHHHHHHHHHHcCC
Q psy14768 318 GCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R------------QVEINEIEAVCHQYNF 383 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~------------~~~~e~~~~~~~~~~~ 383 (452)
++|+|||++++.+|+.+. .|+..+... ..++|++||+||+|+.+ . .+..+++..+++.+++
T Consensus 104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 178 (204)
T 4gzl_A 104 VFLICFSLVSPASFENVRAKWYPEVRHH-----CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 178 (204)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHH-----CSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCC
Confidence 999999999999999997 788888876 26799999999999865 2 2678889999999998
Q ss_pred CEEEEecCCCCccHHHHHHHHHHHH
Q psy14768 384 MSWIEVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 384 ~~~~evSAktg~nv~~lf~~i~~~i 408 (452)
.+|++|||++|.||+++|+++.+.+
T Consensus 179 ~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 179 VKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999998754
No 79
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.93 E-value=1.5e-26 Score=208.43 Aligned_cols=162 Identities=28% Similarity=0.459 Sum_probs=126.2
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++++++.+...+.+|++..+. ..+.. ++..+.+.+|||+|+++|..++..+++++|+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 82 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVV---NGATVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC----------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEE---CCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence 4689999999999999999999988888788788775543 22333 6677889999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cc----------ccHHHHHHHHHHcCCCEE
Q psy14768 319 CIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQ----------VEINEIEAVCHQYNFMSW 386 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~----------~~~e~~~~~~~~~~~~~~ 386 (452)
+|+|||++++.+|+.+. .|+..+... ..++|++||+||+|+.+ +. +..+++.+++..++..+|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 157 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKHY-----APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAY 157 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH-----CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEE
Confidence 99999999999999997 698888875 24799999999999865 22 467888999999998669
Q ss_pred EEecCCCCccHHHHHHHHHHHHH
Q psy14768 387 IEVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 387 ~evSAktg~nv~~lf~~i~~~i~ 409 (452)
++|||++|.||+++|+++++.+.
T Consensus 158 ~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 158 IECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999998764
No 80
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=1.9e-25 Score=206.81 Aligned_cols=165 Identities=22% Similarity=0.418 Sum_probs=137.6
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|||||||+++|+++.+...+.++++.++... +.. ++..+.+.||||+|+++|..++..+++++|+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEV---DGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEE---TTEEEEEEEEECTTCTTCTTTGGGGCTTCCE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEE---CCEEEEEEEEECCCcHHHHHHHHhhcCCCCE
Confidence 357999999999999999999999888878888888766443 555 7888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCC
Q psy14768 319 CIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFM 384 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~-~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~ 384 (452)
+|+|||++++.+|+.+ ..|+..+... ..++|++||+||+|+.+ +.+..+++..++..++..
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 174 (207)
T 2fv8_A 100 ILMCFSVDSPDSLENIPEKWVPEVKHF-----CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAY 174 (207)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH-----STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCC
Confidence 9999999999999999 6788888765 25699999999999964 236677888999999886
Q ss_pred EEEEecCCCCccHHHHHHHHHHHHHHhh
Q psy14768 385 SWIEVSSKEHLMIEDSMNFLVDRIICSK 412 (452)
Q Consensus 385 ~~~evSAktg~nv~~lf~~i~~~i~~~~ 412 (452)
.|++|||++|.||+++|+++++.+.+.+
T Consensus 175 ~~~~~SA~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 175 DYLECSAKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999887543
No 81
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.93 E-value=3.7e-26 Score=208.34 Aligned_cols=166 Identities=17% Similarity=0.247 Sum_probs=134.5
Q ss_pred CCcccEEEeeecccCCcceeeecccccccccc-----------CCcceeeeEEEEE-EeeecCCeeEEEEEEecCCcchh
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNY-----------KNTVGVDFSTKLL-SHKKYGGRPVKLQIWDIAGQDRY 305 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~-----------~~t~~~d~~~~~i-~~~~~~~~~~~l~l~DtaG~e~~ 305 (452)
...+||+++|.+|||||||++. +.+.+...+ .+|++.++....+ .+ ++..+.+.||||+|+++|
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~-l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKW-IYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEV---KGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHH-HHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCS---SSCEEEEEEEECCSCCSC
T ss_pred ccccEEEEECCCCCCHHHHHHH-HHhhccccccccccccccccccceeeeecccccccc---cCCceEEEEEeCCChHHH
Confidence 3468999999999999999954 444444443 3455555544433 33 677899999999999999
Q ss_pred hhhhhhhhcCCCEEEEEEeCC------ChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHH
Q psy14768 306 ICMSRVYYQNSDGCIIMFDLT------NRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH 379 (452)
Q Consensus 306 ~~~~~~~i~~ad~vIlV~D~t------~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~ 379 (452)
..++..+++++|++|+|||++ +..+|+.+..|+..+.. ...++|++||+||+|+.+ .+..++++++++
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-----~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~ 161 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-----TLDDVPIVIQVNKRDLPD-ALPVEMVRAVVD 161 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-----CTTSSCEEEEEECTTSTT-CCCHHHHHHHHC
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-----ccCCCCEEEEEEchhccc-ccCHHHHHHHHH
Confidence 999999999999999999999 45677777777776632 346799999999999975 577889999999
Q ss_pred HcCCCEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 380 QYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 380 ~~~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
..++.+|+++||++|.||+++|+++++.+.+...
T Consensus 162 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 162 PEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp TTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred hcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 9998449999999999999999999999887654
No 82
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.93 E-value=8.4e-26 Score=211.26 Aligned_cols=167 Identities=26% Similarity=0.545 Sum_probs=146.2
Q ss_pred CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS 316 (452)
Q Consensus 237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a 316 (452)
....+||+++|.+|||||||+++|+.+.+...+.++.+.++....+.. ++..+.+.||||+|++.|..++..+++++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT---NRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEE---TTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE---CCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 345689999999999999999999988888888889888888888777 88899999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768 317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLM 396 (452)
Q Consensus 317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~n 396 (452)
|++|+|||++++.+|+.+..|+..+... ..++|++||+||+|+.+..... +...++...++. |++|||++|.|
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~-----~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~-~~~~Sa~~~~g 161 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRV-----CENIPIVLCGNKVDIKDRKVKA-KSIVFHRKKNLQ-YYDISAKSNYN 161 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHH-----STTCCEEEEEECTTSSSCSSCG-GGCCHHHHHTCE-EEECBGGGTBT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHh-----CCCCCEEEEEECCccccccccH-HHHHHHHHcCCE-EEEEeCCCCCC
Confidence 9999999999999999999999999876 2479999999999998633322 556677777775 99999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy14768 397 IEDSMNFLVDRIICSKR 413 (452)
Q Consensus 397 v~~lf~~i~~~i~~~~~ 413 (452)
|+++|+++.+.+.....
T Consensus 162 i~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 162 FEKPFLWLARKLIGDPN 178 (221)
T ss_dssp TTHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 99999999999876643
No 83
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=1.2e-25 Score=200.06 Aligned_cols=163 Identities=25% Similarity=0.406 Sum_probs=138.7
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.++|+++|.+|+|||||+++++++.+...+.++++..+. ..+.. ++..+.+.+|||+|++.|..++..+++.+|++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~---~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 78 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISC---DKSICTLQITDTTGSHQFPAMQRLSISKGHAF 78 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEE---TTEEEEEEEEECCSCSSCHHHHHHHHHHCSEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEE---CCEEEEEEEEECCCchhhHHHHHHhcccCCEE
Confidence 589999999999999999999998887777787775553 33444 77888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
|+|||++++.+++.+..|+..+..... ...++|++||+||+|+.+ +++..++...++...++. |+++||++|.|++
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~i~~~~~--~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 155 (172)
T 2erx_A 79 ILVYSITSRQSLEELKPIYEQICEIKG--DVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCA-FMETSAKLNHNVK 155 (172)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHC-----CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEEecCCCCcCHH
Confidence 999999999999999988887776521 124689999999999976 667788888898888875 9999999999999
Q ss_pred HHHHHHHHHHH
Q psy14768 399 DSMNFLVDRII 409 (452)
Q Consensus 399 ~lf~~i~~~i~ 409 (452)
++|+++.+.+.
T Consensus 156 ~l~~~l~~~~~ 166 (172)
T 2erx_A 156 ELFQELLNLEK 166 (172)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHHHh
Confidence 99999987654
No 84
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.92 E-value=8e-25 Score=200.23 Aligned_cols=168 Identities=16% Similarity=0.264 Sum_probs=128.8
Q ss_pred CCCcccEEEeeecccCCcceeeecccccccc-ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcC
Q psy14768 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLD-NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQN 315 (452)
Q Consensus 237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~-~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ 315 (452)
.....+|+++|.+|||||||+++|++..+.. .+.+|++..... + +...+.+.||||+|+++|..++..++++
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~--~-----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 86 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET--F-----EKGRVAFTVFDMGGAKKFRGLWETYYDN 86 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE--E-----EETTEEEEEEEECCSGGGGGGGGGGCTT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE--E-----EeCCEEEEEEECCCCHhHHHHHHHHHhc
Confidence 4456899999999999999999999988887 778888844432 2 3356789999999999999999999999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhc----CCCCCcEEEEEECCCCCCCcccHHHHHHHH------HHcCCCE
Q psy14768 316 SDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD----NGAMLPCLLLASKCDLPDRQVEINEIEAVC------HQYNFMS 385 (452)
Q Consensus 316 ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~----~~~~~piilV~NK~Dl~~~~~~~e~~~~~~------~~~~~~~ 385 (452)
+|++|+|||++++.+|+.+..|+..+....... ...++|++||+||+|+.+.. ..+++.+.. +..++ .
T Consensus 87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~-~ 164 (199)
T 4bas_A 87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK-TAAELVEILDLTTLMGDHPF-V 164 (199)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC-CHHHHHHHHTHHHHHTTSCE-E
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC-CHHHHHHHhcchhhccCCee-E
Confidence 999999999999999999998888776542110 01369999999999997621 122222111 33444 5
Q ss_pred EEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 386 WIEVSSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 386 ~~evSAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
|++|||++|.||+++|++|++.+.+...
T Consensus 165 ~~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 165 IFASNGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred EEEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999886643
No 85
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.91 E-value=2.3e-25 Score=202.46 Aligned_cols=168 Identities=17% Similarity=0.370 Sum_probs=124.4
Q ss_pred cccEEEeeecccCCcceeeecccc--ccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQN--KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~--~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
.+||+++|++|||||||+++|++. .+...+.+|++.++....+.+...++..+.+.+|||+|+++|..++..+++.+|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999984 566667888888887665543111235678999999999999999999999999
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cccc---HHHHHHHHHHcCCC---EEEEe
Q psy14768 318 GCIIMFDLTNR-KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVE---INEIEAVCHQYNFM---SWIEV 389 (452)
Q Consensus 318 ~vIlV~D~t~~-~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~---~e~~~~~~~~~~~~---~~~ev 389 (452)
++++|||++++ .+|+.+..|+..+... ..+.|++||+||+|+.+ +.+. .+..+.+++.+++. .|+++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKAR-----ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFV 156 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHH-----CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEEC
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhh-----CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEE
Confidence 99999999997 5899999999988765 24689999999999976 2221 33445666666665 38999
Q ss_pred cCCCCc-cHHHHHHHHHHHHHHhh
Q psy14768 390 SSKEHL-MIEDSMNFLVDRIICSK 412 (452)
Q Consensus 390 SAktg~-nv~~lf~~i~~~i~~~~ 412 (452)
||+++. +++++++.+.+.+.+.+
T Consensus 157 Sa~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 157 NATEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp CTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred ecccCchhHHHHHHHHHHHHhccc
Confidence 999996 99999999988876543
No 86
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.91 E-value=1.8e-24 Score=199.30 Aligned_cols=157 Identities=15% Similarity=0.216 Sum_probs=121.7
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|++|||||||++++.++.+. .+.+|++.+. ..+.+ ++ +.+.+|||+|++.|+.++..+++.+|+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~---~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 95 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTI---AG--MTFTTFDLGGHIQARRVWKNYLPAING 95 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEE---TT--EEEEEEEECC----CCGGGGGGGGCSE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEE---CC--EEEEEEECCCcHhhHHHHHHHHhcCCE
Confidence 4579999999999999999999987764 4567766554 34444 44 789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHc----------------C
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQY----------------N 382 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~----------------~ 382 (452)
+|+|||++++.+|+.+..|+..+.... ...++|++||+||+|+.+ .+..+++.+++... .
T Consensus 96 ~i~v~D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1f6b_A 96 IVFLVDCADHERLLESKEELDSLMTDE---TIANVPILILGNKIDRPE-AISEERLREMFGLYGQTTGKGSVSLKELNAR 171 (198)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCG---GGTTSCEEEEEECTTSTT-CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhCc---ccCCCcEEEEEECCCccc-cCCHHHHHHHhCcccccccccccccccccCc
Confidence 999999999999999999988876541 235699999999999975 56677777776532 2
Q ss_pred CCEEEEecCCCCccHHHHHHHHHHH
Q psy14768 383 FMSWIEVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 383 ~~~~~evSAktg~nv~~lf~~i~~~ 407 (452)
...|++|||++|.||+++|+++.+.
T Consensus 172 ~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 172 PLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred eEEEEEEECCCCCCHHHHHHHHHHh
Confidence 3458999999999999999999764
No 87
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.91 E-value=3.3e-25 Score=196.30 Aligned_cols=157 Identities=20% Similarity=0.323 Sum_probs=121.7
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI 320 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI 320 (452)
+||+++|++|||||||+++++++.+.. +.+|++.. ...+.. ..+.+.+|||+|+++|..++..+++++|++|
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~-----~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 72 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 72 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEEC-----SSCEEEEEECCCCGGGHHHHHHHTTTCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEE-----CCEEEEEEEcCCChhhHHHHHHHhccCCEEE
Confidence 589999999999999999999877653 56777633 333333 4578999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHH-----HcCCCEEEEecCCCCc
Q psy14768 321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH-----QYNFMSWIEVSSKEHL 395 (452)
Q Consensus 321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~-----~~~~~~~~evSAktg~ 395 (452)
+|||++++.+|+.+..|+..+.... ...++|++||+||+|+.+. ...+++..... ..++ ++++|||++|.
T Consensus 73 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 147 (164)
T 1r8s_A 73 FVVDSNDRERVNEAREELMRMLAED---ELRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSLRHRNW-YIQATCATSGD 147 (164)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTC-CCHHHHHHHTTGGGCSSCCE-EEEECBTTTTB
T ss_pred EEEECCCHHHHHHHHHHHHHHHhch---hhcCCeEEEEEECcCCcCC-CCHHHHHHHhCcccccCccE-EEEEcccCCCc
Confidence 9999999999999988888776531 2356999999999999752 22222222211 1122 48999999999
Q ss_pred cHHHHHHHHHHHHHH
Q psy14768 396 MIEDSMNFLVDRIIC 410 (452)
Q Consensus 396 nv~~lf~~i~~~i~~ 410 (452)
||+++|+++++.+.+
T Consensus 148 gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 148 GLYEGLDWLSNQLRN 162 (164)
T ss_dssp THHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999987753
No 88
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.91 E-value=3.4e-24 Score=195.29 Aligned_cols=162 Identities=19% Similarity=0.282 Sum_probs=128.9
Q ss_pred CCcccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS 316 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a 316 (452)
...++|+++|.+|+|||||+++|++.. +...+.+|++. ....+.+ + .+.+.+|||+|++++..++..+++++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~---~--~~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKS---S--SLSFTVFDMSGQGRYRNLWEHYYKEG 91 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEEC---S--SCEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEE---C--CEEEEEEECCCCHHHHHHHHHHHhcC
Confidence 346899999999999999999999877 56667777763 3344444 3 47899999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCC--CCCcEEEEEECCCCCCCcccHHHHHHHHH--HcC--CCEEEEec
Q psy14768 317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNG--AMLPCLLLASKCDLPDRQVEINEIEAVCH--QYN--FMSWIEVS 390 (452)
Q Consensus 317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~--~~~piilV~NK~Dl~~~~~~~e~~~~~~~--~~~--~~~~~evS 390 (452)
|++|+|||++++.+|+.+..|+..+.... .. .++|++||+||+|+.+ ....+++.++.. .+. ...+++||
T Consensus 92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (190)
T 2h57_A 92 QAIIFVIDSSDRLRMVVAKEELDTLLNHP---DIKHRRIPILFFANKMDLRD-AVTSVKVSQLLCLENIKDKPWHICASD 167 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHST---TTTTSCCCEEEEEECTTSTT-CCCHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCh---hhccCCCeEEEEEeCcCccc-CCCHHHHHHHhChhhccCCceEEEEcc
Confidence 99999999999999999988888876642 11 5799999999999975 344556666553 211 23589999
Q ss_pred CCCCccHHHHHHHHHHHHHH
Q psy14768 391 SKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 391 Aktg~nv~~lf~~i~~~i~~ 410 (452)
|++|.||+++|++|.+.+.+
T Consensus 168 a~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 168 AIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TTTTBTHHHHHHHHHHHC--
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999987754
No 89
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.91 E-value=4.7e-24 Score=195.00 Aligned_cols=158 Identities=16% Similarity=0.224 Sum_probs=126.6
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|++|||||||++++.++.+. .+.+|.+.+ ...+.+ ++ +.+.+|||+|++.+..++..+++++|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~---~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d 92 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAI---GN--IKFTTFDLGGHIQARRLWKDYFPEVN 92 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEE---TT--EEEEEEECCCSGGGTTSGGGGCTTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEE---CC--EEEEEEECCCCHHHHHHHHHHHhcCC
Confidence 34579999999999999999999987764 455666654 334444 44 78999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHc-----------CCCEE
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQY-----------NFMSW 386 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~-----------~~~~~ 386 (452)
++|+|||++++.+|+.+..|+..+.... ...++|++||+||+|+.+ .+..+++.+++... ...+|
T Consensus 93 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T 1m2o_B 93 GIVFLVDAADPERFDEARVELDALFNIA---ELKDVPFVILGNKIDAPN-AVSEAELRSALGLLNTTGSQRIEGQRPVEV 168 (190)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCG---GGTTCCEEEEEECTTSTT-CCCHHHHHHHTTCSSCCC---CCSSCCEEE
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHcch---hhcCCCEEEEEECCCCcC-CCCHHHHHHHhCCccccccccccccceEEE
Confidence 9999999999999999999888876541 235699999999999975 55666666655432 23358
Q ss_pred EEecCCCCccHHHHHHHHHHH
Q psy14768 387 IEVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 387 ~evSAktg~nv~~lf~~i~~~ 407 (452)
++|||++|.||+++|+++.+.
T Consensus 169 ~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 169 FMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEeECCcCCCHHHHHHHHHhh
Confidence 999999999999999998753
No 90
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.91 E-value=1.8e-24 Score=192.57 Aligned_cols=159 Identities=19% Similarity=0.288 Sum_probs=125.2
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||++++.++.+. .+.+|++... ..+.+ + .+.+.+|||+|++.+..++..+++++|+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~---~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 77 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNV--ETVTY---K--NLKFQVWDLGGLTSIRPYWRCYYSNTDA 77 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEEE---T--TEEEEEEEECCCGGGGGGGGGGCTTCSE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccce--EEEEE---C--CEEEEEEECCCChhhhHHHHHHhccCCE
Confidence 4589999999999999999999987764 4567766443 34444 3 5789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHH-----HHcCCCEEEEecCCC
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVC-----HQYNFMSWIEVSSKE 393 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~-----~~~~~~~~~evSAkt 393 (452)
+|+|||++++.+|+.+..|+..+.... ...++|++||+||+|+.+. ...+++.... ...++ +|+++||++
T Consensus 78 ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 152 (171)
T 1upt_A 78 VIYVVDSCDRDRIGISKSELVAMLEEE---ELRKAILVVFANKQDMEQA-MTSSEMANSLGLPALKDRKW-QIFKTSATK 152 (171)
T ss_dssp EEEEEETTCCTTHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTC-CCHHHHHHHHTGGGCTTSCE-EEEECCTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhch---hhCCCEEEEEEECCCCcCC-CCHHHHHHHhCchhccCCce-EEEECcCCC
Confidence 999999999999999988887775431 2256999999999999752 1222222222 22233 589999999
Q ss_pred CccHHHHHHHHHHHHHH
Q psy14768 394 HLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 394 g~nv~~lf~~i~~~i~~ 410 (452)
|.|++++|+++++.+.+
T Consensus 153 ~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 153 GTGLDEAMEWLVETLKS 169 (171)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999988764
No 91
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.91 E-value=1.2e-23 Score=193.44 Aligned_cols=164 Identities=29% Similarity=0.599 Sum_probs=144.5
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v 319 (452)
.++|+++|++|+|||||++++++..+...+.++++.++....+.+ ++..+.+.+|||+|++++..++..+++.+|++
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~---~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 81 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV---DGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEE---TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE---CCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence 589999999999999999999998888888899888888888877 88889999999999999998888999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398 (452)
Q Consensus 320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~ 398 (452)
|+|||+++..+|+++..|+..+... .....|+++|+||+|+.+ +.+..+++..++...++. ++++||+++.+++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~-~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 82 LLVYDIAKHLTYENVERWLKELRDH----ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLS-FIETSALDSTNVE 156 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh----cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCe-EEEEeCCCCCCHH
Confidence 9999999999999998898877654 345689999999999976 667778899999998876 8999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy14768 399 DSMNFLVDRIICS 411 (452)
Q Consensus 399 ~lf~~i~~~i~~~ 411 (452)
++|+++.+.+.+.
T Consensus 157 ~l~~~l~~~~~~~ 169 (199)
T 2f9l_A 157 EAFKNILTEIYRI 169 (199)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 92
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.91 E-value=2.4e-24 Score=196.21 Aligned_cols=161 Identities=23% Similarity=0.370 Sum_probs=127.9
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++|+++.+...+.+|++.++.. + ....+.+.||||+|+++|..++..+++++|+
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--I-----TKGNVTIKLWDIGGQPRFRSMWERYCRGVSA 93 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--E-----EETTEEEEEEEECCSHHHHTTHHHHHTTCSE
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--E-----EeCCEEEEEEECCCCHhHHHHHHHHHccCCE
Confidence 46899999999999999999999988887888888877643 2 2346789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHH----cCCCEEEEecCCCC
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQ----YNFMSWIEVSSKEH 394 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~----~~~~~~~evSAktg 394 (452)
+|+|||+++..+|+.+..|+..+.... ...++|++||+||+|+.+. ...+++.+.... .....+++|||++|
T Consensus 94 ii~v~D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 169 (188)
T 1zd9_A 94 IVYMVDAADQEKIEASKNELHNLLDKP---QLQGIPVLVLGNKRDLPGA-LDEKELIEKMNLSAIQDREICCYSISCKEK 169 (188)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCG---GGTTCCEEEEEECTTSTTC-CCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhCc---ccCCCCEEEEEECCCCccC-CCHHHHHHHhChhhhccCCeeEEEEECCCC
Confidence 999999999999999988888775531 2356999999999999752 222222222111 01234899999999
Q ss_pred ccHHHHHHHHHHHHHH
Q psy14768 395 LMIEDSMNFLVDRIIC 410 (452)
Q Consensus 395 ~nv~~lf~~i~~~i~~ 410 (452)
.||+++|+++++.+..
T Consensus 170 ~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 170 DNIDITLQWLIQHSKS 185 (188)
T ss_dssp TTHHHHHHHHHHTCC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999887643
No 93
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.91 E-value=8.5e-24 Score=191.63 Aligned_cols=160 Identities=25% Similarity=0.380 Sum_probs=127.8
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++++++. ...+.+|++... ..+.+ + .+.+.+|||+|++++..++..+++++|+
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~--~~~~~---~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 88 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI--KTLEH---R--GFKLNIWDVGGQKSLRSYWRNYFESTDG 88 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE--EEEEE---T--TEEEEEEEECCSHHHHTTGGGGCTTCSE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce--EEEEE---C--CEEEEEEECCCCHhHHHHHHHHhcCCCE
Confidence 46899999999999999999999877 667778877443 34444 3 5789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHH-----HcCCCEEEEecCCC
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH-----QYNFMSWIEVSSKE 393 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~-----~~~~~~~~evSAkt 393 (452)
+|+|||++++.+|+.+..|+..+.... ...++|++||+||+|+.+. ...+++.+... ..++ +++++||++
T Consensus 89 ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 163 (186)
T 1ksh_A 89 LIWVVDSADRQRMQDCQRELQSLLVEE---RLAGATLLIFANKQDLPGA-LSCNAIQEALELDSIRSHHW-RIQGCSAVT 163 (186)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTC-CCHHHHHHHTTGGGCCSSCE-EEEECCTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHhCh---hcCCCcEEEEEeCccCCCC-CCHHHHHHHhChhhccCCce-EEEEeeCCC
Confidence 999999999999999988887776541 2356999999999999752 23333333322 1223 589999999
Q ss_pred CccHHHHHHHHHHHHHHh
Q psy14768 394 HLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 394 g~nv~~lf~~i~~~i~~~ 411 (452)
|.|++++|+++.+.+.+.
T Consensus 164 ~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 164 GEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp CTTHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999887643
No 94
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=7.8e-24 Score=192.39 Aligned_cols=160 Identities=18% Similarity=0.282 Sum_probs=124.7
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|||||||+++++++.+. .+.+|++... ..+.+ + .+.+.+|||+|++++..++..+++++|+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~---~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 86 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVI---N--NTRFLMWDIGGQESLRSSWNTYYTNTEF 86 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEE---T--TEEEEEEECCC----CGGGHHHHTTCCE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEE---C--CEEEEEEECCCCHhHHHHHHHHhcCCCE
Confidence 4689999999999999999999987776 6667777443 33334 3 4789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHH-----cCCCEEEEecCCC
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQ-----YNFMSWIEVSSKE 393 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~-----~~~~~~~evSAkt 393 (452)
+|+|||++++.+|+.+..|+..+.... ...++|++||+||+|+.+ ....+++.+.... .++ .+++|||++
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~-~~~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~ 161 (187)
T 1zj6_A 87 VIVVVDSTDRERISVTREELYKMLAHE---DLRKAGLLIFANKQDVKE-CMTVAEISQFLKLTSIKDHQW-HIQACCALT 161 (187)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTSG---GGTTCEEEEEEECTTSTT-CCCHHHHHHHHTGGGCCSSCE-EEEECBTTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhch---hhCCCeEEEEEECCCCcC-CCCHHHHHHHhChhhhcCCCc-EEEEccCCC
Confidence 999999999999999999988886541 235699999999999975 3334455444432 233 589999999
Q ss_pred CccHHHHHHHHHHHHHHh
Q psy14768 394 HLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 394 g~nv~~lf~~i~~~i~~~ 411 (452)
|.||+++|+++++.+...
T Consensus 162 g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 162 GEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp TBTHHHHHHHHHHHHCC-
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 999999999999877543
No 95
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.90 E-value=6.5e-24 Score=192.46 Aligned_cols=160 Identities=25% Similarity=0.334 Sum_probs=123.4
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|++|||||||++++.++.+ ..+.+|++.. ...+.+ + .+.+.+|||+|++.|..++..+++.+|
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~--~~~~~~---~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 85 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN--IKSVQS---Q--GFKLNVWDIGGQRKIRPYWRSYFENTD 85 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE--EEEEEE---T--TEEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE--EEEEEE---C--CEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 4568999999999999999999998754 3455666643 333444 3 578999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHH-----HcCCCEEEEecCC
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH-----QYNFMSWIEVSSK 392 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~-----~~~~~~~~evSAk 392 (452)
++|+|||++++.+|+.+..|+..+.... ...++|++||+||+|+.+. ...+++.+... ..+ ..|++|||+
T Consensus 86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 160 (181)
T 1fzq_A 86 ILIYVIDSADRKRFEETGQELTELLEEE---KLSCVPVLIFANKQDLLTA-APASEIAEGLNLHTIRDRV-WQIQSCSAL 160 (181)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHTTCG---GGTTCCEEEEEECTTSTTC-CCHHHHHHHTTGGGCCSSC-EEEEECCTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEECcCcccC-CCHHHHHHHhCchhccCCc-eEEEEccCC
Confidence 9999999999999999988887765431 2356999999999999752 22233322221 112 248999999
Q ss_pred CCccHHHHHHHHHHHHHH
Q psy14768 393 EHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 393 tg~nv~~lf~~i~~~i~~ 410 (452)
+|.||+++|+++++.+.+
T Consensus 161 ~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 161 TGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp TCTTHHHHHHHHHHTC--
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987754
No 96
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.84 E-value=7.6e-26 Score=208.77 Aligned_cols=162 Identities=25% Similarity=0.442 Sum_probs=137.7
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|.+|+|||||+++|+++.+...+.++++..+ ...+.. ++..+.+.+|||+|+++|..++..+++++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV---DGKPVNLGLWDTAGQEDYDRLRPLSYPQTD 103 (204)
Confidence 3468999999999999999999999888877777776554 344444 677788999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C------------cccHHHHHHHHHHcCC
Q psy14768 318 GCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R------------QVEINEIEAVCHQYNF 383 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~------------~~~~e~~~~~~~~~~~ 383 (452)
++|+|||++++.+|+++. .|+..+... ..++|++||+||+|+.+ . .+..+++.++++.+++
T Consensus 104 ~iilv~D~~~~~s~~~~~~~~~~~l~~~-----~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 178 (204)
T 3th5_A 104 VFLICFSLVSPASFENVRAKWYPEVRHH-----CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 178 (204)
Confidence 999999999999999997 788877765 23699999999999975 2 4556777888888887
Q ss_pred CEEEEecCCCCccHHHHHHHHHHHH
Q psy14768 384 MSWIEVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 384 ~~~~evSAktg~nv~~lf~~i~~~i 408 (452)
.+|++|||++|.||+++|+++++.+
T Consensus 179 ~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 179 VKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 5599999999999999999998765
No 97
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.90 E-value=1.7e-24 Score=198.27 Aligned_cols=159 Identities=18% Similarity=0.310 Sum_probs=119.0
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|++|||||||+++++++.+. .+.+|++.. ...+.. ..+.+.+|||+|+++|..++..+++++|
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~-----~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEY-----KNICFTVWDVGGQDKIRPLWRHYFQNTQ 98 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEE--EEEEEE-----TTEEEEEEECC-----CTTHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCcee--EEEEEE-----CCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 34689999999999999999999987765 345666633 333333 4578999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHH-----HcCCCEEEEecCC
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH-----QYNFMSWIEVSSK 392 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~-----~~~~~~~~evSAk 392 (452)
++|+|||++++.+|+.+..|+..+.... ...++|++||+||+|+.+. ...+++.+... ..+ .++++|||+
T Consensus 99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~---~~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~-~~~~~~SA~ 173 (192)
T 2b6h_A 99 GLIFVVDSNDRERVQESADELQKMLQED---ELRDAVLLVFANKQDMPNA-MPVSELTDKLGLQHLRSRT-WYVQATCAT 173 (192)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTC-CCHHHHHHHTTGGGCSSCC-EEEEECBTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHhccc---ccCCCeEEEEEECCCCCCC-CCHHHHHHHhCcccccCCc-eEEEECcCC
Confidence 9999999999999999998888776531 2356999999999999752 22222222211 112 248999999
Q ss_pred CCccHHHHHHHHHHHHH
Q psy14768 393 EHLMIEDSMNFLVDRII 409 (452)
Q Consensus 393 tg~nv~~lf~~i~~~i~ 409 (452)
+|.||+++|+++++.+.
T Consensus 174 ~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 174 QGTGLYDGLDWLSHELS 190 (192)
T ss_dssp TTBTHHHHHHHHHHHTT
T ss_pred CcCCHHHHHHHHHHHHh
Confidence 99999999999998764
No 98
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.90 E-value=1.1e-23 Score=190.52 Aligned_cols=157 Identities=18% Similarity=0.273 Sum_probs=124.2
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|.+|+|||||+++|+++.+ ..+.++++.... .+.+ + .+.+.+|||+|+++|..++..+++++|
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~--~~~~---~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE--EIVI---N--NTRFLMWDIGGQESLRSSWNTYYTNTE 90 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCE--EEEE---T--TEEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeE--EEEE---C--CEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 3468999999999999999999998877 556677775543 3333 3 378999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHH-----cCCCEEEEecCC
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQ-----YNFMSWIEVSSK 392 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~-----~~~~~~~evSAk 392 (452)
++|+|||+++..+|+.+..|+..+.... ...++|++||+||+|+.+ ....+++.+.... .++ .+++|||+
T Consensus 91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~-~~~~~~i~~~~~~~~~~~~~~-~~~~~Sa~ 165 (181)
T 2h17_A 91 FVIVVVDSTDRERISVTREELYKMLAHE---DLRKAGLLIFANKQDVKE-CMTVAEISQFLKLTSIKDHQW-HIQACCAL 165 (181)
T ss_dssp EEEEEEETTCTTTHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTT-CCCHHHHHHHTTGGGCCSSCE-EEEECBTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhCh---hhCCCeEEEEEECCCccc-CCCHHHHHHHhCcccccCCce-EEEEccCC
Confidence 9999999999999999988888776531 235699999999999975 2334444443321 222 58999999
Q ss_pred CCccHHHHHHHHHHH
Q psy14768 393 EHLMIEDSMNFLVDR 407 (452)
Q Consensus 393 tg~nv~~lf~~i~~~ 407 (452)
+|.||+++|+++++.
T Consensus 166 ~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 166 TGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTBTHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHhh
Confidence 999999999999754
No 99
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.90 E-value=1.7e-23 Score=206.95 Aligned_cols=163 Identities=24% Similarity=0.449 Sum_probs=143.1
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++++++.+...+.++++..+ ...+.. ++..+.+.+|||+|++.|..++..+++++|+
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 229 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV---DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 229 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEE---TTEEEEEEEEEECCCGGGTTTGGGGCTTCSE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEE---CCEEEEEEEEeCCCchhhhHHHHHhccCCCE
Confidence 458999999999999999999998888888888887555 445555 8888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCC
Q psy14768 319 CIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFM 384 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~ 384 (452)
+|+|||++++.+|+++. .|+..+... ..++|++||+||+|+.+ +.+..+++.++++..++.
T Consensus 230 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 304 (332)
T 2wkq_A 230 FLICFSLVSPASFHHVRAKWYPEVRHH-----CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 304 (332)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH-----CTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhh-----CCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCc
Confidence 99999999999999997 688888775 23799999999999854 357788899999999986
Q ss_pred EEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768 385 SWIEVSSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 385 ~~~evSAktg~nv~~lf~~i~~~i~~ 410 (452)
+|++|||++|.||+++|+.+++.+.+
T Consensus 305 ~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 305 KYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 69999999999999999999988764
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=1.2e-23 Score=189.69 Aligned_cols=161 Identities=23% Similarity=0.304 Sum_probs=124.4
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|++|||||||+++++++.+ ..+.++++... ..+.+ + .+.+.+|||+|++.+..++..+++++|+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~---~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSY---K--NLKLNVWDLGGQTSIRPYWRCYYADTAA 88 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEE---T--TEEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEE---C--CEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 468999999999999999999998777 56667777443 33434 3 4789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcC----CCEEEEecCCCC
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYN----FMSWIEVSSKEH 394 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~----~~~~~evSAktg 394 (452)
+|+|||++++.+|+.+..|+..+.... ...++|++||+||+|+.+ ....+++.+...... ..+++++||++|
T Consensus 89 ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (183)
T 1moz_A 89 VIFVVDSTDKDRMSTASKELHLMLQEE---ELQDAALLVFANKQDQPG-ALSASEVSKELNLVELKDRSWSIVASSAIKG 164 (183)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHTTSS---TTSSCEEEEEEECTTSTT-CCCHHHHHHHTTTTTCCSSCEEEEEEBGGGT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHcCh---hhCCCeEEEEEECCCCCC-CCCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence 999999999999999998888776541 246799999999999975 233444444332211 125899999999
Q ss_pred ccHHHHHHHHHHHHHHh
Q psy14768 395 LMIEDSMNFLVDRIICS 411 (452)
Q Consensus 395 ~nv~~lf~~i~~~i~~~ 411 (452)
.||+++|+++.+.+.+.
T Consensus 165 ~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 165 EGITEGLDWLIDVIKEE 181 (183)
T ss_dssp BTHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 99999999999988654
No 101
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.90 E-value=4.3e-23 Score=188.86 Aligned_cols=162 Identities=28% Similarity=0.595 Sum_probs=145.0
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++++++|++|||||||++++++..+...+.++++.++....+.+ ++..+.+.+|||+|++++..++..+++.+++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~---~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV---DGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEE---TTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE---CCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence 3589999999999999999999998888888899999988888888 8888899999999999999888999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
+++|||+++..+|+++..|+..+... .....|+++|+||+|+.+ +.+..+++..++...++. ++++||+++.++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~-~ld~Sald~~~v 179 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDH----ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLS-FIETSALDSTNV 179 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence 99999999999999998888877654 345689999999999976 667788899999998876 899999999999
Q ss_pred HHHHHHHHHHH
Q psy14768 398 EDSMNFLVDRI 408 (452)
Q Consensus 398 ~~lf~~i~~~i 408 (452)
+++|+.+.+.+
T Consensus 180 ~~l~~~l~~~i 190 (191)
T 1oix_A 180 EAAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 102
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.90 E-value=4.4e-24 Score=194.20 Aligned_cols=160 Identities=24% Similarity=0.328 Sum_probs=125.4
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|++|+|||||++++.++.+. .+.+|++... ..+.. + .+.+.+|||+|++++..++..+++++|+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~---~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 92 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNL--ETLQY---K--NISFEVWDLGGQTGVRPYWRCYFSDTDA 92 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCE--EEEEE---T--TEEEEEEEECCSSSSCCCCSSSSTTCCE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEE--EEEEE---C--CEEEEEEECCCCHhHHHHHHHHhhcCCE
Confidence 4689999999999999999999987765 3567776433 33434 3 5789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHH-----HHcCCCEEEEecCCC
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVC-----HQYNFMSWIEVSSKE 393 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~-----~~~~~~~~~evSAkt 393 (452)
+|+|||++++.+|+.+..|+..+.... ...++|++||+||+|+.+. ...+++.+.. ...++ ++++|||++
T Consensus 93 ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 167 (189)
T 2x77_A 93 VIYVVDSTDRDRMGVAKHELYALLDED---ELRKSLLLIFANKQDLPDA-ASEAEIAEQLGVSSIMNRTW-TIVKSSSKT 167 (189)
T ss_dssp EEEEEETTCCTTHHHHHHHHHHHHTCS---TTTTCEEEEEEECTTSTTC-CCHHHHHHHTTGGGCCSSCE-EEEECCTTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhh---hcCCCeEEEEEECCCCcCC-CCHHHHHHHhChhhccCCce-EEEEccCCC
Confidence 999999999999999988887775531 2357999999999999752 1222222221 11233 589999999
Q ss_pred CccHHHHHHHHHHHHHHh
Q psy14768 394 HLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 394 g~nv~~lf~~i~~~i~~~ 411 (452)
|.||+++|+++.+.+.+.
T Consensus 168 ~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 168 GDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CTTHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhc
Confidence 999999999999988654
No 103
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.90 E-value=5.1e-24 Score=195.50 Aligned_cols=162 Identities=15% Similarity=0.213 Sum_probs=120.4
Q ss_pred CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhh---hhhh
Q psy14768 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMS---RVYY 313 (452)
Q Consensus 237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~---~~~i 313 (452)
....+||+++|.+|||||||++++.+. +... ++.+.++....+.....++..+.+.||||+|+++|..+. ..++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 345799999999999999999977653 3322 344443333222221113567889999999999988776 8999
Q ss_pred cCCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--------CcccHHHHHHHHH----
Q psy14768 314 QNSDGCIIMFDLTNR--KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--------RQVEINEIEAVCH---- 379 (452)
Q Consensus 314 ~~ad~vIlV~D~t~~--~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--------~~~~~e~~~~~~~---- 379 (452)
+++|++|+|||+++. .+++.+..|+..+... ..++|++||+||+|+.+ +.+..++.+++++
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-----NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE 168 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-----CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-----CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh
Confidence 999999999999997 5666666677666433 35799999999999864 3455556677777
Q ss_pred HcCCCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768 380 QYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 380 ~~~~~~~~evSAktg~nv~~lf~~i~~~i 408 (452)
.+++. |++|||++ .||+++|+.+++.+
T Consensus 169 ~~~~~-~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 169 KLHLS-FYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TSCEE-EEEECTTS-THHHHHHHHHHHHT
T ss_pred cCCcc-eEEEEech-hhHHHHHHHHHHHh
Confidence 45554 99999999 99999999998865
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.89 E-value=3.6e-23 Score=185.61 Aligned_cols=161 Identities=14% Similarity=0.192 Sum_probs=124.0
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|.+|+|||||+++|++..+...+.++++.++....+.+ ++ ..+.+|||+|++.|..++..++..+|
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d 80 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV---ND--KKITFLDTPGHEAFTTMRARGAQVTD 80 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEE---TT--EEEEESCCCSSSSSSCSCCSSCCCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEe---CC--ceEEEEECCCCHHHHHHHHHHHhhCC
Confidence 45689999999999999999999998888887788877776666665 54 45779999999999999889999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCC--------CEEEEe
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNF--------MSWIEV 389 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~--------~~~~ev 389 (452)
++|+|||++++...+....+ ..+. ..++|++||+||+|+.+. ..++.......... .+|++|
T Consensus 81 ~~i~v~d~~~~~~~~~~~~l-~~~~-------~~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 2lkc_A 81 IVILVVAADDGVMPQTVEAI-NHAK-------AANVPIIVAINKMDKPEA--NPDRVMQELMEYNLVPEEWGGDTIFCKL 150 (178)
T ss_dssp EEEEEEETTCCCCHHHHHHH-HHHG-------GGSCCEEEEEETTTSSCS--CHHHHHHHHTTTTCCBTTTTSSEEEEEC
T ss_pred EEEEEEECCCCCcHHHHHHH-HHHH-------hCCCCEEEEEECccCCcC--CHHHHHHHHHhcCcChhHcCCcccEEEE
Confidence 99999999985443333222 2221 235899999999999752 23334433333322 368999
Q ss_pred cCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 390 SSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
||++|.||+++|+++++.+...+.
T Consensus 151 Sa~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 151 SAKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred ecCCCCCHHHHHHHHHHhhhhhcc
Confidence 999999999999999998876554
No 105
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.89 E-value=3.3e-24 Score=205.78 Aligned_cols=167 Identities=19% Similarity=0.336 Sum_probs=126.8
Q ss_pred CCCcccEEEeeec---------ccCCcceeeeccc---cccccccCCcc-eeeeEEEEEEe-----------eecCCeeE
Q psy14768 237 QIPTYPILITGDS---------TVGKTSYVQGFVQ---NKFLDNYKNTV-GVDFSTKLLSH-----------KKYGGRPV 292 (452)
Q Consensus 237 ~~~~~kI~ivG~~---------nvGKSSLin~l~~---~~~~~~~~~t~-~~d~~~~~i~~-----------~~~~~~~~ 292 (452)
....+||+++|.+ |||||||+++|++ +.+...+.+++ +.++....+.+ ...++..+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 3456899999999 9999999999998 66777777776 55544332211 00156778
Q ss_pred EEEEEe-----------------------cCCcchhhhhhhhhhc---------------------CCCEEEEEEeCCCh
Q psy14768 293 KLQIWD-----------------------IAGQDRYICMSRVYYQ---------------------NSDGCIIMFDLTNR 328 (452)
Q Consensus 293 ~l~l~D-----------------------taG~e~~~~~~~~~i~---------------------~ad~vIlV~D~t~~ 328 (452)
.+.||| ++|+++|..++..+++ ++|++|+|||++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 899999 7888888888887777 79999999999998
Q ss_pred --hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHc-CCCEEEEecCCCCccHHHHHHHH
Q psy14768 329 --KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQY-NFMSWIEVSSKEHLMIEDSMNFL 404 (452)
Q Consensus 329 --~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~-~~~~~~evSAktg~nv~~lf~~i 404 (452)
.+|+.+..|+..+.... ...++|++||+||+|+.+ +.+ +++++++... ++ +|++|||++|.||+++|+++
T Consensus 176 ~~~s~~~~~~~l~~i~~~~---~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~-~~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQL---AKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNL-QVVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp ---CHHHHHHHHHHHHHHH---HHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSC-CEEECBTTTTBSHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHh---ccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCC-eEEEEECCCCCCHHHHHHHH
Confidence 99999999998886542 124699999999999975 333 5677777764 55 49999999999999999999
Q ss_pred HHHHH
Q psy14768 405 VDRII 409 (452)
Q Consensus 405 ~~~i~ 409 (452)
++.+.
T Consensus 250 ~~~l~ 254 (255)
T 3c5h_A 250 VQLID 254 (255)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88764
No 106
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.88 E-value=2e-22 Score=189.51 Aligned_cols=171 Identities=13% Similarity=0.149 Sum_probs=122.2
Q ss_pred CCCCCCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc------ch--
Q psy14768 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ------DR-- 304 (452)
Q Consensus 233 l~~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~------e~-- 304 (452)
++......++|+++|.+|||||||+|+|+++.+.....+.++.+.....+.. ....+.||||+|+ ++
T Consensus 22 ~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~l~DtpG~~~~~~~~~~~ 96 (228)
T 2qu8_A 22 LPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH-----KLNKYQIIDTPGLLDRAFENRNT 96 (228)
T ss_dssp CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE-----TTEEEEEEECTTTTTSCGGGCCH
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec-----CCCeEEEEECCCCcCcccchhhh
Confidence 3444456799999999999999999999998776555455555554444433 3467999999998 43
Q ss_pred --hhhhhhhhhcCCCEEEEEEeCCChhhHHH--HHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHH---HHHH
Q psy14768 305 --YICMSRVYYQNSDGCIIMFDLTNRKSFES--VVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEIN---EIEA 376 (452)
Q Consensus 305 --~~~~~~~~i~~ad~vIlV~D~t~~~S~~~--~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e---~~~~ 376 (452)
+..+ ..++..+|++|+|||++++.+|+. ...|+..+... ..++|++||+||+|+.+ +++..+ ....
T Consensus 97 ~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 170 (228)
T 2qu8_A 97 IEMTTI-TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-----FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQ 170 (228)
T ss_dssp HHHHHH-HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-----C-CCCEEEEEECGGGCC--CCCHHHHHHHHH
T ss_pred HHHHHH-HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-----hcCCcEEEEEeCcccCCchhhHHHHHHHHHH
Confidence 2222 345788999999999999988752 23455555442 24699999999999976 444443 4566
Q ss_pred HHHHcC-CCEEEEecCCCCccHHHHHHHHHHHHHHhhhh
Q psy14768 377 VCHQYN-FMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414 (452)
Q Consensus 377 ~~~~~~-~~~~~evSAktg~nv~~lf~~i~~~i~~~~~~ 414 (452)
++...+ ...|++|||++|.||+++|+++++.+.+.+..
T Consensus 171 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~ 209 (228)
T 2qu8_A 171 ILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQAE 209 (228)
T ss_dssp HHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHHHH
Confidence 666665 13599999999999999999999999876653
No 107
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.88 E-value=3.9e-23 Score=184.31 Aligned_cols=152 Identities=18% Similarity=0.232 Sum_probs=115.4
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh------hhhhhhh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI------CMSRVYY 313 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~------~~~~~~i 313 (452)
.++|+++|++|||||||++++.+..+...+.++++.+.....+.+ ++ ..+.+|||+|++.|. .+...++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~---~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 77 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY---NG--EKFKVVDLPGVYSLTANSIDEIIARDYI 77 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEE---TT--EEEEEEECCCCSCSSSSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEE---CC--cEEEEEECCCcccCCCcchhHHHHHHHH
Confidence 478999999999999999999987776666677777766666655 43 578999999998775 3445566
Q ss_pred c--CCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEec
Q psy14768 314 Q--NSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVS 390 (452)
Q Consensus 314 ~--~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evS 390 (452)
+ ++|++++|||+++.. ....|+..+... ++|+++|+||+|+.+ +.+.. +.+++++.++.. |+++|
T Consensus 78 ~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~~-------~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~-~~~~S 145 (165)
T 2wji_A 78 INEKPDLVVNIVDATALE---RNLYLTLQLMEM-------GANLLLALNKMDLAKSLGIEI-DVDKLEKILGVK-VVPLS 145 (165)
T ss_dssp HHHCCSEEEEEEETTCHH---HHHHHHHHHHHT-------TCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSC-EEECB
T ss_pred hcCCCCEEEEEecCCchh---HhHHHHHHHHhc-------CCCEEEEEEchHhccccChhh-HHHHHHHHhCCC-EEEEE
Confidence 5 899999999998753 334566655432 489999999999865 33332 467788888876 99999
Q ss_pred CCCCccHHHHHHHHHHHH
Q psy14768 391 SKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 391 Aktg~nv~~lf~~i~~~i 408 (452)
|++|.||+++|+++.+.+
T Consensus 146 A~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 146 AAKKMGIEELKKAISIAV 163 (165)
T ss_dssp GGGTBSHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHh
Confidence 999999999999998764
No 108
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.88 E-value=2e-22 Score=198.57 Aligned_cols=165 Identities=20% Similarity=0.282 Sum_probs=131.4
Q ss_pred cccEEEeeecccCCcceeeecccc--ccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh-----hhhhhh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQN--KFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY-----ICMSRV 311 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~--~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~-----~~~~~~ 311 (452)
.+||+++|++|||||||+++++++ .+. ..+.+|++.++. .+.+ ++ .+.+.+|||+|++.| ..++..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~---~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~ 76 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRF---LG-NMTLNLWDCGGQDVFMENYFTKQKDH 76 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEE---TT-TEEEEEEEECCSHHHHHHHHTTTHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEe---CC-ceEEEEEECCCcHHHhhhhhhhHHHH
Confidence 579999999999999999998875 332 234455555444 3333 34 688999999999988 677888
Q ss_pred hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---Cc----ccHHHHHHHHHHcCC-
Q psy14768 312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQ----VEINEIEAVCHQYNF- 383 (452)
Q Consensus 312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~----~~~e~~~~~~~~~~~- 383 (452)
+++++|++|+|||+++..+|+++..|...+..... ...++|++||+||+|+.+ +. +..+++.+++..+++
T Consensus 77 ~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~--~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~ 154 (307)
T 3r7w_A 77 IFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRK--YSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFP 154 (307)
T ss_dssp HHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHH--hCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999887666654321 135799999999999976 33 566888999999985
Q ss_pred -CEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 384 -MSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 384 -~~~~evSAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
.+|++|||++ .++.++|..+++.+.....
T Consensus 155 ~~~~~~tSa~~-~~i~e~~~~iv~~li~~~~ 184 (307)
T 3r7w_A 155 NLIGFPTSIWD-ESLYKAWSQIVCSLIPNMS 184 (307)
T ss_dssp SCEEEECCTTS-SHHHHHHHHHHHTTCSCHH
T ss_pred CeEEEEeeecC-ChHHHHHHHHHHHHcCCHH
Confidence 6799999999 8999999999887665443
No 109
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.87 E-value=3.1e-22 Score=185.75 Aligned_cols=161 Identities=14% Similarity=0.184 Sum_probs=114.2
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCe-eEEEEEEecCCcchhhh-hhhhhhcCC
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR-PVKLQIWDIAGQDRYIC-MSRVYYQNS 316 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~-~~~l~l~DtaG~e~~~~-~~~~~i~~a 316 (452)
..++|+++|.+|+|||||+++|+++.+...+. +++.++.. +.+ ++. .+.+.||||+|+++|.. ++..+++.+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~~~~~~--~~~---~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 79 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAI--YKV---NNNRGNSLTLIDLPGHESLRFQLLDRFKSSA 79 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEEEE--EEC---SSTTCCEEEEEECCCCHHHHHHHHHHHGGGE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccC-CcceeeEE--EEe---cCCCccEEEEEECCCChhHHHHHHHHHHhhC
Confidence 46899999999999999999999888776664 44445543 444 443 68899999999999987 788899999
Q ss_pred CEEEEEEeCCChh-hHHHHHH-HHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccH---HHHHHHHH------------
Q psy14768 317 DGCIIMFDLTNRK-SFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEI---NEIEAVCH------------ 379 (452)
Q Consensus 317 d~vIlV~D~t~~~-S~~~~~~-~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~---e~~~~~~~------------ 379 (452)
|++|+|||+++.. ++..+.. |...+.... ....++|++||+||+|+.+..... +.+.+...
T Consensus 80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~ 157 (214)
T 2fh5_B 80 RAVVFVVDSAAFQREVKDVAEFLYQVLIDSM--ALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPST 157 (214)
T ss_dssp EEEEEEEETTTHHHHHHHHHHHHHHHHHHHH--TSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----
T ss_pred CEEEEEEECCCcCHHHHHHHHHHHHHHhhhh--hcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhcccc
Confidence 9999999999853 4555544 444443320 123568999999999997621111 11221111
Q ss_pred ---------HcC-------------CCEEEEecCCCC------ccHHHHHHHHHHH
Q psy14768 380 ---------QYN-------------FMSWIEVSSKEH------LMIEDSMNFLVDR 407 (452)
Q Consensus 380 ---------~~~-------------~~~~~evSAktg------~nv~~lf~~i~~~ 407 (452)
..+ ...|++|||++| .||+++|++|.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 158 LDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp -------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 111 345999999999 9999999999875
No 110
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.87 E-value=2.4e-22 Score=199.94 Aligned_cols=161 Identities=19% Similarity=0.289 Sum_probs=119.8
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|||||||+++|.++.+.... +|++.++.. +. ...+.+.||||+|++.|..++..+++.+|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~~~--~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 235 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET--VE-----YKNISFTVWDVGGQDKIRPLWRHYFQNTQG 235 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEEEE--EE-----ETTEEEEEEECC-----CCSHHHHHTTEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEEEE--Ee-----cCcEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 4579999999999999999999988776543 666655433 32 245789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHc----CCCEEEEecCCCC
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQY----NFMSWIEVSSKEH 394 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~----~~~~~~evSAktg 394 (452)
+|+|||+++..+|+.+..|+..+.... ...++|++||+||+|+.+.. ..+++....... ...+|++|||++|
T Consensus 236 vilV~D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilV~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~vSAk~g 311 (329)
T 3o47_A 236 LIFVVDSNDRERVNEAREELMRMLAED---ELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRHRNWYIQATCATSG 311 (329)
T ss_dssp EEEEEETTCSSSHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCC-CHHHHHHHHTCTTCCSSCEEEEECBTTTT
T ss_pred EEEEEECCchHHHHHHHHHHHHHHhhh---ccCCCeEEEEEECccCCccc-CHHHHHHHhchhhhhcCCCEEEEEECCCC
Confidence 999999999999999988777665431 33579999999999997522 222222222111 1124899999999
Q ss_pred ccHHHHHHHHHHHHHHh
Q psy14768 395 LMIEDSMNFLVDRIICS 411 (452)
Q Consensus 395 ~nv~~lf~~i~~~i~~~ 411 (452)
.||+++|++|++.+.+.
T Consensus 312 ~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 312 DGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp BTHHHHHHHHHHHHTC-
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 99999999999987643
No 111
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.86 E-value=1.2e-22 Score=200.00 Aligned_cols=163 Identities=15% Similarity=0.158 Sum_probs=122.3
Q ss_pred cEEEeeecccCCcceeeeccccccc---cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh---hhhhhhcC
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFL---DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC---MSRVYYQN 315 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~---~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~---~~~~~i~~ 315 (452)
||+++|+.|||||||++++.++.+. ..+.+|++.++... + ..+.++|||||||++|.. ++..||++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-------~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~ 72 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-------S-TLIDLAVMELPGQLNYFEPSYDSERLFKS 72 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-------C-SSSCEEEEECCSCSSSCCCSHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-------c-cEEEEEEEECCCchhccchhhhhhhhccC
Confidence 6899999999999999887654332 23568888777542 2 347899999999999974 46889999
Q ss_pred CCEEEEEEeCCChhhHHHHHHH---HHHHHhhhhhcCCCCCcEEEEEECCCCCC--------CcccHHHHHHHHHH----
Q psy14768 316 SDGCIIMFDLTNRKSFESVVQW---KHDLDSKCILDNGAMLPCLLLASKCDLPD--------RQVEINEIEAVCHQ---- 380 (452)
Q Consensus 316 ad~vIlV~D~t~~~S~~~~~~~---~~~i~~~~~~~~~~~~piilV~NK~Dl~~--------~~~~~e~~~~~~~~---- 380 (452)
++++|+|||+++. .++....| +..+... .+++|++|||||+|+.+ +++..++++++++.
T Consensus 73 a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~-----~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~ 146 (331)
T 3r7w_B 73 VGALVYVIDSQDE-YINAITNLAMIIEYAYKV-----NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDG 146 (331)
T ss_dssp CSEEEEECCCSSC-TTHHHHHHHHHHHHHHHH-----CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSC
T ss_pred CCEEEEEEECCch-HHHHHHHHHHHHHHHhhc-----CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccc
Confidence 9999999999998 44444444 3333332 35799999999999975 23556666777775
Q ss_pred cCCCEEEEecCCCCccHHHHHHHHHHHHHHhhhhhHHHHh
Q psy14768 381 YNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420 (452)
Q Consensus 381 ~~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~~~~~~~~ 420 (452)
+++ .|++|||++ .||.++|..+++.++......+....
T Consensus 147 ~~i-~f~eTSAkd-~nV~eAFs~iv~~li~~~~~le~~L~ 184 (331)
T 3r7w_B 147 VQV-SFYLTSIFD-HSIYEAFSRIVQKLIPELSFLENMLD 184 (331)
T ss_dssp CCE-EEECCCSSS-SHHHHHHHHHHTTSSTTHHHHHHHHT
T ss_pred cCc-eEEEeccCC-CcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444 499999997 59999999999988876555554433
No 112
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.86 E-value=2.1e-22 Score=211.23 Aligned_cols=164 Identities=22% Similarity=0.288 Sum_probs=125.7
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD 317 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad 317 (452)
...++|+++|.+|||||||+++|+++.+. .+.+|++.++.. +. ...+.+.||||+|++.|..++..+++++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~--~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad 391 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET--VT-----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQ 391 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEE--EE-----SSSCEEEEEEECCCGGGSGGGGGGGTTCC
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEEE--EE-----eCCEEEEEEECCCcHHHHHHHHHHhccCC
Confidence 34689999999999999999999987754 455777755543 32 34578999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHc----CCCEEEEecCCC
Q psy14768 318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQY----NFMSWIEVSSKE 393 (452)
Q Consensus 318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~----~~~~~~evSAkt 393 (452)
++|+|||++++.+|+.+..|+..+.... ...++|+|||+||+|+.+ ....+++....... ...+|++|||++
T Consensus 392 ~~i~V~D~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 467 (497)
T 3lvq_E 392 GLIFVVDCADRDRIDEARQELHRIINDR---EMRDAIILIFANKQDLPD-AMKPHEIQEKLGLTRIRDRNWYVQPSCATS 467 (497)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTSG---GGTTCEEEEEEECCSSSS-CCCHHHHHHHTTCTTCCSSCEEEEECBTTT
T ss_pred EEEEEEECcchhHHHHHHHHHHHHhhhh---hcCCCcEEEEEECCCCCc-CCCHHHHHHHhchhhhhcCCeEEEEEECCC
Confidence 9999999999999999998888775531 235799999999999975 22233332222111 112489999999
Q ss_pred CccHHHHHHHHHHHHHHhhh
Q psy14768 394 HLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 394 g~nv~~lf~~i~~~i~~~~~ 413 (452)
|.||+++|++|.+.+.+...
T Consensus 468 g~gi~~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 468 GDGLYEGLTWLTSNYKSKLA 487 (497)
T ss_dssp TBTHHHHHHHHHHHCC----
T ss_pred CCCHHHHHHHHHHHHHhcCC
Confidence 99999999999987754443
No 113
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.86 E-value=5e-22 Score=180.02 Aligned_cols=159 Identities=16% Similarity=0.198 Sum_probs=123.7
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC-----------cchhhhhh
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG-----------QDRYICMS 309 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG-----------~e~~~~~~ 309 (452)
++|+++|.+|||||||++++++..+...+.++++.+.... .. . .+.+|||+| ++.+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~--~~---~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 72 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEI--EW---K----NHKIIDMPGFGFMMGLPKEVQERIKDEI 72 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEE--EE---T----TEEEEECCCBSCCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEE--ec---C----CEEEEECCCccccccCCHHHHHHHHHHH
Confidence 6899999999999999999999888877777776554433 22 2 578999999 77888888
Q ss_pred hhhhcC-CCEEEEEEeCCChhhHHHH-HHHHHH--------HHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHH
Q psy14768 310 RVYYQN-SDGCIIMFDLTNRKSFESV-VQWKHD--------LDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH 379 (452)
Q Consensus 310 ~~~i~~-ad~vIlV~D~t~~~S~~~~-~~~~~~--------i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~ 379 (452)
..+++. ++++++|||+.+..+++.+ ..|... +.... ...++|++||+||+|+.+.. .++.+++++
T Consensus 73 ~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~--~~~~~~~~~ 147 (190)
T 2cxx_A 73 VHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL---RELDIPTIVAVNKLDKIKNV--QEVINFLAE 147 (190)
T ss_dssp HHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHH---HHTTCCEEEEEECGGGCSCH--HHHHHHHHH
T ss_pred HHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHH---HhcCCceEEEeehHhccCcH--HHHHHHHHH
Confidence 888887 8888888888888888877 556542 11111 22469999999999997522 667888888
Q ss_pred HcCCC------EEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 380 QYNFM------SWIEVSSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 380 ~~~~~------~~~evSAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
.++.. .+++|||++|.||+++|+++++.+.+.+.
T Consensus 148 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 148 KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred HhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 88874 36999999999999999999998865443
No 114
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.85 E-value=2.6e-21 Score=176.30 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=107.4
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC----------cchhhhh
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG----------QDRYICM 308 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG----------~e~~~~~ 308 (452)
..++|+++|.+|+|||||+|+++++.+...+.++.+.......... +. .+.+|||+| ++.|..+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---ND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 4689999999999999999999988766555555544333333333 33 488999999 7788888
Q ss_pred hhhhhcCC---CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHc---C
Q psy14768 309 SRVYYQNS---DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQY---N 382 (452)
Q Consensus 309 ~~~~i~~a---d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~---~ 382 (452)
+..+++.+ |++|+|||++++.++.+...+ ..+.. .++|+++|+||+|+.+.........++.+.+ .
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 167 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQMY-EFLKY-------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDP 167 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHH-HHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCT
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH-------cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccC
Confidence 88888777 999999999999888875422 22222 3489999999999976221222223333322 3
Q ss_pred CCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768 383 FMSWIEVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 383 ~~~~~evSAktg~nv~~lf~~i~~~i 408 (452)
..+++++||++|.||+++|+++.+.+
T Consensus 168 ~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 168 EDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCceEEEEccCCCCHHHHHHHHHHHh
Confidence 35699999999999999999998765
No 115
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.85 E-value=8.4e-22 Score=178.57 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=124.8
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh------hhhhhh
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI------CMSRVY 312 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~------~~~~~~ 312 (452)
..++|+++|++|||||||+++|++..+...+.++++.+.....+.. + ...+.+|||+|++.+. .++..+
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~---~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY---N--GEKFKVVDLPGVYSLTANSIDEIIARDY 80 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE---T--TEEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEe---C--CcEEEEEECCCcCccccccHHHHHHHHH
Confidence 4589999999999999999999987776677788887777666665 4 4778999999998774 345556
Q ss_pred hc--CCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEe
Q psy14768 313 YQ--NSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEV 389 (452)
Q Consensus 313 i~--~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~ev 389 (452)
+. .+|++++|+|+++ ++....|+..+.. .++|++||+||+|+.+ +.+. ++.+++++.++.. ++++
T Consensus 81 ~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~-~~~~ 148 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATA---LERNLYLTLQLME-------MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVK-VVPL 148 (188)
T ss_dssp HHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT-------TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSC-EEEC
T ss_pred HhccCCCEEEEEecchh---HHHHHHHHHHHHh-------cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCC-eEEE
Confidence 64 5999999999875 5566667766654 3589999999999865 3332 4567788888876 9999
Q ss_pred cCCCCccHHHHHHHHHHHHHHhh
Q psy14768 390 SSKEHLMIEDSMNFLVDRIICSK 412 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~~i~~~~ 412 (452)
||+++.||+++|+++++.+....
T Consensus 149 Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 149 SAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp BGGGTBSHHHHHHHHHHHHTTC-
T ss_pred EecCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999886654
No 116
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.85 E-value=1.2e-21 Score=172.53 Aligned_cols=151 Identities=16% Similarity=0.159 Sum_probs=107.2
Q ss_pred ccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch-------hhhhhhhh
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR-------YICMSRVY 312 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~-------~~~~~~~~ 312 (452)
.+|+++|.+|+|||||++++.+..+. ....++++.+.....+.. ++ ..+.+|||+|++. +...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 76 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVET---DR--GRFLLVDTGGLWSGDKWEKKIQEKVDRA 76 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEE---TT--EEEEEEECGGGCSSSSCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEe---CC--ceEEEEECCCCCCccchHHHHHHHHHHH
Confidence 58999999999999999999986643 344456666666666655 44 4688999999886 34455678
Q ss_pred hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCC
Q psy14768 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSK 392 (452)
Q Consensus 313 i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAk 392 (452)
++.+|++|+|||+++..++... .+...+.. .++|+++|+||+|+.+. .+++.++. .+++.+|+++||+
T Consensus 77 ~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~-------~~~p~ilv~nK~Dl~~~---~~~~~~~~-~~~~~~~~~~Sa~ 144 (161)
T 2dyk_A 77 LEDAEVVLFAVDGRAELTQADY-EVAEYLRR-------KGKPVILVATKVDDPKH---ELYLGPLY-GLGFGDPIPTSSE 144 (161)
T ss_dssp TTTCSEEEEEEESSSCCCHHHH-HHHHHHHH-------HTCCEEEEEECCCSGGG---GGGCGGGG-GGSSCSCEECBTT
T ss_pred HHhCCEEEEEEECCCcccHhHH-HHHHHHHh-------cCCCEEEEEECcccccc---hHhHHHHH-hCCCCCeEEEecc
Confidence 8999999999999987655432 12222222 24899999999999752 23344455 6677459999999
Q ss_pred CCccHHHHHHHHHHHH
Q psy14768 393 EHLMIEDSMNFLVDRI 408 (452)
Q Consensus 393 tg~nv~~lf~~i~~~i 408 (452)
+|.|++++|+++++.+
T Consensus 145 ~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 145 HARGLEELLEAIWERL 160 (161)
T ss_dssp TTBSHHHHHHHHHHHC
T ss_pred cCCChHHHHHHHHHhC
Confidence 9999999999998753
No 117
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.85 E-value=7e-22 Score=177.74 Aligned_cols=154 Identities=17% Similarity=0.206 Sum_probs=114.1
Q ss_pred cccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh------h--hh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC------M--SR 310 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~------~--~~ 310 (452)
.++|+++|++|+|||||+|++.+..+ .....++++.++....+.+ ++ ..+.+|||+|++++.. + ..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 78 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI---DG--MPLHIIDTAGLREASDEVERIGIERAW 78 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE---TT--EEEEEEECCCCSCCSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEE---CC--eEEEEEECCCcccchhHHHHHHHHHHH
Confidence 47899999999999999999998653 3444567777777777766 55 4578999999875321 1 12
Q ss_pred hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEec
Q psy14768 311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVS 390 (452)
Q Consensus 311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evS 390 (452)
.+++.+|++|+|||+++..+++. ..|+..+... ...++|++||+||+|+.+... .++.. ...+|++||
T Consensus 79 ~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~----~~~~~p~ilv~NK~Dl~~~~~------~~~~~-~~~~~~~~S 146 (172)
T 2gj8_A 79 QEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIAR----LPAKLPITVVRNKADITGETL------GMSEV-NGHALIRLS 146 (172)
T ss_dssp HHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHH----SCTTCCEEEEEECHHHHCCCC------EEEEE-TTEEEEECC
T ss_pred HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHh----cccCCCEEEEEECccCCcchh------hhhhc-cCCceEEEe
Confidence 46899999999999999988874 4566666654 345699999999999854110 01111 234589999
Q ss_pred CCCCccHHHHHHHHHHHHHH
Q psy14768 391 SKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 391 Aktg~nv~~lf~~i~~~i~~ 410 (452)
|++|.||+++|+++.+.+..
T Consensus 147 A~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 147 ARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp TTTCTTHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHhhh
Confidence 99999999999999887643
No 118
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.84 E-value=7.5e-21 Score=187.45 Aligned_cols=162 Identities=11% Similarity=0.108 Sum_probs=130.2
Q ss_pred CCcccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh----------
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI---------- 306 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~---------- 306 (452)
.....|+++|.+|||||||+|+|++..+. ....++++.+........ + ...++.||||+|+..+.
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~---~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI---P-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE---T-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEec---C-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 44578999999999999999999997654 344555665554444433 2 25789999999985433
Q ss_pred hhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC-CCcccHHHHHHHHHHcC-CC
Q psy14768 307 CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP-DRQVEINEIEAVCHQYN-FM 384 (452)
Q Consensus 307 ~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~-~~~~~~e~~~~~~~~~~-~~ 384 (452)
.....+++.+|++|+|+|++++.++++...|+..+... ++|+++|+||+|+. +.....+....+.+.++ +.
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~-------~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~ 156 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL-------NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELT 156 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG-------CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc-------CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCC
Confidence 45567899999999999999999999988888777654 48999999999998 46667778888888884 55
Q ss_pred EEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768 385 SWIEVSSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 385 ~~~evSAktg~nv~~lf~~i~~~i~~ 410 (452)
+++++||++|.|++++|+++.+.+.+
T Consensus 157 ~i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 157 EIVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 69999999999999999999987754
No 119
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.84 E-value=1.1e-20 Score=171.73 Aligned_cols=157 Identities=18% Similarity=0.200 Sum_probs=114.0
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC----------cchhhh
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG----------QDRYIC 307 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG----------~e~~~~ 307 (452)
...++|+++|.+|+|||||+|++++..+ ....++.+.......... + ..+.+|||+| ++.+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~---~---~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLV---N---SKYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEE---T---TTEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEE---C---CcEEEEECCCCccccCChhhHHHHHH
Confidence 3468999999999999999999998763 233344433332222222 2 2477999999 677888
Q ss_pred hhhhhhcCC---CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHHHc
Q psy14768 308 MSRVYYQNS---DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCHQY 381 (452)
Q Consensus 308 ~~~~~i~~a---d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~~~ 381 (452)
++..+++.+ |++++|+|+++..+...... ...+... ++|++||+||+|+.+ .....+++.+++...
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~-~~~~~~~-------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~ 165 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMM-VEWMKSL-------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY 165 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHH-HHHHHHT-------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHHH-HHHHHHc-------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc
Confidence 877777766 99999999988765554432 1222221 489999999999975 334455667777776
Q ss_pred CCCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768 382 NFMSWIEVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 382 ~~~~~~evSAktg~nv~~lf~~i~~~i~ 409 (452)
+..+|+++||++|.||+++|+++.+.+.
T Consensus 166 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 166 GEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 6556999999999999999999998764
No 120
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.82 E-value=8.9e-21 Score=182.25 Aligned_cols=153 Identities=15% Similarity=0.116 Sum_probs=120.6
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh------hhhhhh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC------MSRVYY 313 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~------~~~~~i 313 (452)
.++|+++|.+|+|||||+|+|++..+.....++++.+.....+.. ....+.||||+|+..+.. +...++
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~-----~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~ 79 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY-----KGYTINLIDLPGTYSLGYSSIDEKIARDYL 79 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE-----TTEEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE-----CCeEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence 579999999999999999999997776666777777766655544 347899999999987764 234555
Q ss_pred --cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEec
Q psy14768 314 --QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVS 390 (452)
Q Consensus 314 --~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evS 390 (452)
..+|++|+|+|+++..+.. .|...+... ++|++||+||+|+.+ +.+. .+..++.+.+++. ++++|
T Consensus 80 ~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~-------~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~-vi~~S 147 (258)
T 3a1s_A 80 LKGDADLVILVADSVNPEQSL---YLLLEILEM-------EKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIP-VVFTS 147 (258)
T ss_dssp HHSCCSEEEEEEETTSCHHHH---HHHHHHHTT-------TCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSC-EEECC
T ss_pred hhcCCCEEEEEeCCCchhhHH---HHHHHHHhc-------CCCEEEEEECcCCCCccchH-HHHHHHHHHcCCC-EEEEE
Confidence 5899999999999865433 344444432 499999999999865 3333 2467888888976 99999
Q ss_pred CCCCccHHHHHHHHHHHHH
Q psy14768 391 SKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 391 Aktg~nv~~lf~~i~~~i~ 409 (452)
|++|.|++++|+++.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999998765
No 121
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.82 E-value=2.5e-21 Score=204.90 Aligned_cols=166 Identities=17% Similarity=0.287 Sum_probs=125.9
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEE------EeeecCCeeEEEEEEecCCcchhhhhhhh
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL------SHKKYGGRPVKLQIWDIAGQDRYICMSRV 311 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i------~~~~~~~~~~~l~l~DtaG~e~~~~~~~~ 311 (452)
...+||+++|.+|||||||++++++..+...+.+|++.++..... .+ ..++..+.+.+|||+|++.|..++..
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~-~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLEN-DDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTT-CSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceee-cCCCceEEEEEEECCcHHHHHHHHHH
Confidence 456999999999999999999999998888888999888776531 11 01344688999999999999999999
Q ss_pred hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEec
Q psy14768 312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVS 390 (452)
Q Consensus 312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evS 390 (452)
+++.+|++|+|||+++. +++..|+..+... ..++|+|||+||+|+.+ +.+..+++++++...+.. +++||
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~-----~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~vS 188 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKY-----GGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENR-FHRIS 188 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHH-----SSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTC-EEECC
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHh-----CCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCc-eEEEe
Confidence 99999999999999865 5667788888876 24689999999999987 677788888888888876 99999
Q ss_pred CCCCccHHHHHHHHHHHHHHhhh
Q psy14768 391 SKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 391 Aktg~nv~~lf~~i~~~i~~~~~ 413 (452)
|++|.||+++|+.+.+.+.+...
T Consensus 189 A~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 189 CKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp C-----CTTHHHHHHHHHTCTTS
T ss_pred cCcccCHHHHHHHHHHHHhcccc
Confidence 99999999999999998876543
No 122
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.81 E-value=5.9e-21 Score=183.29 Aligned_cols=151 Identities=15% Similarity=0.111 Sum_probs=118.1
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh----------hhh
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC----------MSR 310 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~----------~~~ 310 (452)
.+|+++|.+|+|||||+|+|++..+.....++++.+.....+.+ ++ ..+.||||||+..+.. +..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~---~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~ 76 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLL---GE--HLIEITDLPGVYSLVANAEGISQDEQIAA 76 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEE---TT--EEEEEEECCCCSSCC------CHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEE---CC--eEEEEEeCCCcccccccccCCCHHHHHHH
Confidence 47999999999999999999998777777788888888777766 44 4788999999977653 445
Q ss_pred hhh--cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEE
Q psy14768 311 VYY--QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIE 388 (452)
Q Consensus 311 ~~i--~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~e 388 (452)
.++ .++|++|+|+|+++..++..+..| +.. .++|++||+||+|+.+..........+.+.+++. +++
T Consensus 77 ~~~~~~~~d~vi~VvDas~~~~~~~l~~~---l~~-------~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-vi~ 145 (256)
T 3iby_A 77 QSVIDLEYDCIINVIDACHLERHLYLTSQ---LFE-------LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCS-VIP 145 (256)
T ss_dssp HHHHHSCCSEEEEEEEGGGHHHHHHHHHH---HTT-------SCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSC-EEE
T ss_pred HHHhhCCCCEEEEEeeCCCchhHHHHHHH---HHH-------cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCC-EEE
Confidence 566 899999999999986555443332 222 3589999999999865111112355677788876 999
Q ss_pred ecCCCCccHHHHHHHHHHH
Q psy14768 389 VSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 389 vSAktg~nv~~lf~~i~~~ 407 (452)
+||++|.|++++|+++.+.
T Consensus 146 ~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 146 IQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CBGGGTBSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999999875
No 123
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.81 E-value=3e-20 Score=173.24 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=111.4
Q ss_pred CcccEEEeeecccCCcceeeecccccc--ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC----------cchhh
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKF--LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG----------QDRYI 306 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~--~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG----------~e~~~ 306 (452)
..++|+++|.+|+|||||+|+|+++.. .....++++.+.....+. ......+.||||+| ++.+.
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVG----PAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEES----CTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEec----CCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 468999999999999999999998763 333344444444333322 13446788999999 45556
Q ss_pred hhhhhhhcC---CCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cc--ccHHHHHHHHHH
Q psy14768 307 CMSRVYYQN---SDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQ--VEINEIEAVCHQ 380 (452)
Q Consensus 307 ~~~~~~i~~---ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~--~~~e~~~~~~~~ 380 (452)
.+...+++. +|++|+|+|+++..+..+. .|+..+.. .++|++||+||+|+.+ .. ...+++.+....
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~l~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~ 175 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTELDR-RMIEWFAP-------TGKPIHSLLTKCDKLTRQESINALRATQKSLDA 175 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHGG-------GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHHHH-HHHHHHHh-------cCCCEEEEEeccccCChhhHHHHHHHHHHHHHh
Confidence 666666666 7889999999987654433 34444443 2489999999999976 21 122333333444
Q ss_pred c------CCCEEEEecCCCCccHHHHHHHHHHHHHHh
Q psy14768 381 Y------NFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 381 ~------~~~~~~evSAktg~nv~~lf~~i~~~i~~~ 411 (452)
+ ...+++++||++|.||+++|++|.+.+...
T Consensus 176 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 176 YRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp HHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred hhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 2 455699999999999999999999887544
No 124
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.81 E-value=1.6e-20 Score=181.86 Aligned_cols=152 Identities=16% Similarity=0.148 Sum_probs=116.6
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh------hhhhhhh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI------CMSRVYY 313 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~------~~~~~~i 313 (452)
.++|+++|.+|||||||+|+|++........++++.+..... + +. ...+.+|||||++.+. .+...++
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~--~---~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGL--V---KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEE--C---TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEE--E---ec-CCeEEEEECCCcCccCCCChHHHHHHHHH
Confidence 478999999999999999999987655555576665543332 3 44 5678999999998775 4556666
Q ss_pred c--CCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEec
Q psy14768 314 Q--NSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVS 390 (452)
Q Consensus 314 ~--~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evS 390 (452)
. ++|++|+|||+++..++ ..|...+.. .++|++||+||+|+.+ +.+. .+...+.+.+++. +++||
T Consensus 77 ~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~-------~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~-vi~~S 144 (272)
T 3b1v_A 77 LSQRADSILNVVDATNLERN---LYLTTQLIE-------TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVP-VVATS 144 (272)
T ss_dssp HTTCCSEEEEEEEGGGHHHH---HHHHHHHHH-------TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSC-EEECB
T ss_pred hcCCCCEEEEEecCCchHhH---HHHHHHHHh-------cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCC-EEEEE
Confidence 5 69999999999986543 345444443 2489999999999865 3333 3567788888886 99999
Q ss_pred CCCCccHHHHHHHHHHHHH
Q psy14768 391 SKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 391 Aktg~nv~~lf~~i~~~i~ 409 (452)
|++|.||+++|+++.+.+.
T Consensus 145 A~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 145 ALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTTBSHHHHHHHHHHSCT
T ss_pred ccCCCCHHHHHHHHHHHHh
Confidence 9999999999999988653
No 125
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.81 E-value=9.4e-21 Score=183.67 Aligned_cols=154 Identities=18% Similarity=0.142 Sum_probs=118.2
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh----------hh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC----------MS 309 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~----------~~ 309 (452)
.++|+++|.+|+|||||+|+|++..+...+.++++.+.....+.. .+ ..+.+|||||+..+.. +.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~---~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~ 77 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFST---TD--HQVTLVDLPGTYSLTTISSQTSLDEQIA 77 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEEC---SS--CEEEEEECCCCSCSCC----CCHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEe---CC--CceEEEECcCCCccccccccCCHHHHHH
Confidence 579999999999999999999998877778888888887777765 43 4678899999887652 22
Q ss_pred hhh--hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEE
Q psy14768 310 RVY--YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWI 387 (452)
Q Consensus 310 ~~~--i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~ 387 (452)
..+ ++.+|++|+|+|+++...+..+..+ +... ++|+++|+||+|+.+..........+.+.+++. ++
T Consensus 78 ~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~-------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~-~i 146 (274)
T 3i8s_A 78 CHYILSGDADLLINVVDASNLERNLYLTLQ---LLEL-------GIPCIVALNMLDIAEKQNIRIEIDALSARLGCP-VI 146 (274)
T ss_dssp HHHHHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH-------TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSC-EE
T ss_pred HHHHhhcCCCEEEEEecCCChHHHHHHHHH---HHhc-------CCCEEEEEECccchhhhhHHHHHHHHHHhcCCC-EE
Confidence 233 3799999999999986554443333 3322 389999999999865111122356777888876 99
Q ss_pred EecCCCCccHHHHHHHHHHHHH
Q psy14768 388 EVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 388 evSAktg~nv~~lf~~i~~~i~ 409 (452)
++||++|.|++++|+++.+.+.
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999987654
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.80 E-value=4.5e-20 Score=191.79 Aligned_cols=155 Identities=15% Similarity=0.147 Sum_probs=99.7
Q ss_pred cccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhh--------h
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMS--------R 310 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~--------~ 310 (452)
.++|+++|.+|+|||||+|+|++.. ......++++.++....+.+ ++ +.+.||||+|++.+...+ .
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~---~g--~~l~liDT~G~~~~~~~ve~~gi~~~~ 307 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIH---DK--TMFRLTDTAGLREAGEEIEHEGIRRSR 307 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEE---TT--EEEEEEC--------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE---CC--eEEEEEECCCCCcchhHHHHHHHHHHH
Confidence 5789999999999999999999864 45666788888887777766 44 679999999998765433 3
Q ss_pred hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEe
Q psy14768 311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEV 389 (452)
Q Consensus 311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~ev 389 (452)
.+++++|++|+|||++++.+++.+..+...+... .++|+++|+||+|+.+ ... ..+++.+. ++.++++|
T Consensus 308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~~~---~~~~l~~~-~~~~~i~v 377 (476)
T 3gee_A 308 MKMAEADLILYLLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANADA---LIRAIADG-TGTEVIGI 377 (476)
T ss_dssp CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTTHH---HHHHHHHH-HTSCEEEC
T ss_pred hhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCccch---hHHHHHhc-CCCceEEE
Confidence 3688999999999999998886554444444433 2589999999999976 222 22334443 23459999
Q ss_pred cCCCCccHHHHHHHHHHHHH
Q psy14768 390 SSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~~i~ 409 (452)
||++|.||+++|+++.+.+.
T Consensus 378 SAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 378 SALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp BTTTTBSHHHHHHHHTHHHH
T ss_pred EECCCCCHHHHHHHHHHHHh
Confidence 99999999999999999886
No 127
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.80 E-value=1.4e-19 Score=177.67 Aligned_cols=154 Identities=14% Similarity=0.115 Sum_probs=112.6
Q ss_pred cccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch--------hhhhhh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR--------YICMSR 310 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~--------~~~~~~ 310 (452)
..+|+++|++|||||||+|+|++..+. .+..++++.+.....+.. ...++.||||||+.. +.....
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~-----~~~~l~l~DTpG~~~~~~~l~~~~~~~~~ 81 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE-----GRRQIVFVDTPGLHKPMDALGEFMDQEVY 81 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-----TTEEEEEEECCCCCCCCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe-----CCcEEEEecCccccchhhHHHHHHHHHHH
Confidence 467999999999999999999987664 445555555544433322 457899999999875 344556
Q ss_pred hhhcCCCEEEEEEeCCChhhHHHHHHHH-HHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHH-cCCCEEEE
Q psy14768 311 VYYQNSDGCIIMFDLTNRKSFESVVQWK-HDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQ-YNFMSWIE 388 (452)
Q Consensus 311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~-~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~-~~~~~~~e 388 (452)
.+++.+|++|+|||++++.+..+ .|+ ..+... ..++|+++|+||+|+.+... + +.++.+. .++.++++
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~-----~~~~p~ilV~NK~Dl~~~~~--~-~~~~~~~~~~~~~~~~ 151 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPED--ELVARALKPL-----VGKVPILLVGNKLDAAKYPE--E-AMKAYHELLPEAEPRM 151 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGG-----TTTSCEEEEEECGGGCSSHH--H-HHHHHHHTSTTSEEEE
T ss_pred HHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhh-----cCCCCEEEEEECcccCCchH--H-HHHHHHHhcCcCcEEE
Confidence 78999999999999998876654 333 444433 14699999999999975211 0 2223333 45666899
Q ss_pred ecCCCCccHHHHHHHHHHHH
Q psy14768 389 VSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 389 vSAktg~nv~~lf~~i~~~i 408 (452)
+||++|.|++++|+.+...+
T Consensus 152 iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 152 LSALDERQVAELKADLLALM 171 (301)
T ss_dssp CCTTCHHHHHHHHHHHHTTC
T ss_pred EeCCCCCCHHHHHHHHHHhc
Confidence 99999999999999998755
No 128
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.79 E-value=1.6e-19 Score=186.48 Aligned_cols=154 Identities=16% Similarity=0.203 Sum_probs=107.0
Q ss_pred ccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch---------hhhhhh
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR---------YICMSR 310 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~---------~~~~~~ 310 (452)
.+|+++|+||||||||+|+|++++. +....++++.|.....+.+ ++. .+.+|||+|++. +..++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~---~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~ 76 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW---YGK--TFKLVDTCGVFDNPQDIISQKMKEVTL 76 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEE---TTE--EEEEEECTTTTSSGGGCCCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEE---CCe--EEEEEECCCccccccchHHHHHHHHHH
Confidence 4799999999999999999998664 3566688888888777777 554 578999999764 234456
Q ss_pred hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHH-HHHHHHcCCCEEEEe
Q psy14768 311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEI-EAVCHQYNFMSWIEV 389 (452)
Q Consensus 311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~-~~~~~~~~~~~~~ev 389 (452)
.+++.||++|+|||++++.++.+... ...+... ++|++||+||+|+.+. . ..+. .++. .+++..++++
T Consensus 77 ~~~~~ad~il~V~D~~~~~~~~d~~i-~~~l~~~-------~~p~ilv~NK~D~~~~-~-~~~~~~~~~-~lg~~~~~~i 145 (439)
T 1mky_A 77 NMIREADLVLFVVDGKRGITKEDESL-ADFLRKS-------TVDTILVANKAENLRE-F-EREVKPELY-SLGFGEPIPV 145 (439)
T ss_dssp HHHTTCSEEEEEEETTTCCCHHHHHH-HHHHHHH-------TCCEEEEEESCCSHHH-H-HHHTHHHHG-GGSSCSCEEC
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHH-HHHHHHc-------CCCEEEEEeCCCCccc-c-HHHHHHHHH-hcCCCCEEEE
Confidence 78999999999999998877665322 1222222 4899999999998531 1 1222 3343 4676458999
Q ss_pred cCCCCccHHHHHHHHHHHHHH
Q psy14768 390 SSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~~i~~ 410 (452)
||++|.|+.++|+++.+.+.+
T Consensus 146 SA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 146 SAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred eccCCCCHHHHHHHHHHhccc
Confidence 999999999999999988754
No 129
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.79 E-value=1.2e-19 Score=175.44 Aligned_cols=156 Identities=15% Similarity=0.163 Sum_probs=121.6
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh------hhhhhh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC------MSRVYY 313 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~------~~~~~i 313 (452)
.++|+++|.+|+|||||+|++++..+.....++++.+.....+.+ ++ ..+.+|||||+..+.. +...++
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~---~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 77 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEY---RE--KEFLVVDLPGIYSLTAHSIDELIARNFI 77 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEE---TT--EEEEEEECCCCSCCCSSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEE---CC--ceEEEEeCCCccccccCCHHHHHHHHhh
Confidence 478999999999999999999998777778888888887777766 44 4588999999987765 455565
Q ss_pred --cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEec
Q psy14768 314 --QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVS 390 (452)
Q Consensus 314 --~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evS 390 (452)
.++|++|+|+|+++.. .. ..|...+... ..+|+++|+||+|+.+ +.... +...+.+.+++. ++++|
T Consensus 78 ~~~~~d~vi~v~D~~~~~--~~-~~~~~~~~~~------~~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~-~~~~S 146 (271)
T 3k53_A 78 LDGNADVIVDIVDSTCLM--RN-LFLTLELFEM------EVKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVP-VIPTN 146 (271)
T ss_dssp HTTCCSEEEEEEEGGGHH--HH-HHHHHHHHHT------TCCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSC-EEECB
T ss_pred hccCCcEEEEEecCCcch--hh-HHHHHHHHhc------CCCCEEEEEEChhcCcccccHH-HHHHHHHHcCCc-EEEEE
Confidence 6899999999999853 22 2333333332 2389999999999865 22222 267788888877 99999
Q ss_pred CCCCccHHHHHHHHHHHHHHh
Q psy14768 391 SKEHLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 391 Aktg~nv~~lf~~i~~~i~~~ 411 (452)
|++|.|++++|+.+.+.+...
T Consensus 147 a~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 147 AKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp GGGTBTHHHHHHHHHHHHHTC
T ss_pred eCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999887644
No 130
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.78 E-value=2.5e-19 Score=186.40 Aligned_cols=153 Identities=14% Similarity=0.137 Sum_probs=118.9
Q ss_pred cccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc-hhhh--------hh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD-RYIC--------MS 309 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e-~~~~--------~~ 309 (452)
.++|+++|.+|||||||+|+|++.. ......++++.|+....+.+ ++ ..+.||||+|++ .+.. ..
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~---~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~ 317 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI---RG--ILFRIVDTAGVRSETNDLVERLGIERT 317 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE---TT--EEEEEEESSCCCSSCCTTCCCCCHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEec---CC--eEEEEEECCCccccchhhHHHHHHHHH
Confidence 3799999999999999999999864 45666788888888777777 54 568899999998 6542 23
Q ss_pred hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEe
Q psy14768 310 RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEV 389 (452)
Q Consensus 310 ~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~ev 389 (452)
..+++.+|++|+|||++++.++++.+.| ..+ .++|+++|+||+|+.+ .+..+++.++.. .+.. +++|
T Consensus 318 ~~~~~~aD~vl~VvD~s~~~s~~~~~il-~~l---------~~~piivV~NK~DL~~-~~~~~~~~~~~~-~~~~-~i~i 384 (482)
T 1xzp_A 318 LQEIEKADIVLFVLDASSPLDEEDRKIL-ERI---------KNKRYLVVINKVDVVE-KINEEEIKNKLG-TDRH-MVKI 384 (482)
T ss_dssp HHHHHHCSEEEEEEETTSCCCHHHHHHH-HHH---------TTSSEEEEEEECSSCC-CCCHHHHHHHHT-CSTT-EEEE
T ss_pred HHHhhcccEEEEEecCCCCCCHHHHHHH-HHh---------cCCCEEEEEECccccc-ccCHHHHHHHhc-CCCc-EEEE
Confidence 4578999999999999999888775443 222 2489999999999975 234455554432 2234 8999
Q ss_pred cCCCCccHHHHHHHHHHHHHH
Q psy14768 390 SSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~~i~~ 410 (452)
||++|.||+++|+++.+.+..
T Consensus 385 SAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 385 SALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp EGGGTCCHHHHHHHHHHHTHH
T ss_pred ECCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999997653
No 131
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.77 E-value=6.1e-20 Score=170.68 Aligned_cols=146 Identities=20% Similarity=0.199 Sum_probs=105.6
Q ss_pred CCcccEEEeeecccCCcceeeecccccccc---ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhc
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLD---NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQ 314 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~---~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~ 314 (452)
...++|+++|++|+|||||+++|++..+.. .+.++++.++ ..+.+.+|||+|++.+..++..+++
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~------------~~~~~~l~Dt~G~~~~~~~~~~~~~ 77 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY------------DGSGVTLVDFPGHVKLRYKLSDYLK 77 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG------------GGSSCEEEECCCCGGGTHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe------------eCceEEEEECCCcHHHHHHHHHHHH
Confidence 346899999999999999999999876543 3444444332 3456889999999999988888887
Q ss_pred C----CCEEEEEEeCC-ChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cccc------HHHHHHHHHHcC
Q psy14768 315 N----SDGCIIMFDLT-NRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVE------INEIEAVCHQYN 382 (452)
Q Consensus 315 ~----ad~vIlV~D~t-~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~------~e~~~~~~~~~~ 382 (452)
. +|++|+|||++ +..+|..+..|+..+..........++|++||+||+|+.+ +.+. .+++..++...+
T Consensus 78 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 157 (218)
T 1nrj_B 78 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK 157 (218)
T ss_dssp HHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh
Confidence 7 89999999999 8899999988887776542211235799999999999986 3222 455666766666
Q ss_pred CCEEEEecCCCCcc
Q psy14768 383 FMSWIEVSSKEHLM 396 (452)
Q Consensus 383 ~~~~~evSAktg~n 396 (452)
.. |+++||++|.+
T Consensus 158 ~~-~~~~Sa~~~~~ 170 (218)
T 1nrj_B 158 KS-LNEVERKINEE 170 (218)
T ss_dssp HH-HHC--------
T ss_pred cc-ccccccccccc
Confidence 55 89999998865
No 132
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.77 E-value=6e-18 Score=170.05 Aligned_cols=163 Identities=15% Similarity=0.161 Sum_probs=121.7
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh---------hh
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI---------CM 308 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~---------~~ 308 (452)
...++|+++|.+|||||||+|++++........+.++.+.....+.. ....+.+|||+|+..+. ..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 239 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED-----GYFRYQIIDTPGLLDRPISERNEIEKQA 239 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEE-----TTEEEEEEECTTTSSSCSTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEe-----cCceEEEEeCCCccccchhhhhHHHHHH
Confidence 45689999999999999999999987654444444444444333333 24678999999975432 11
Q ss_pred hhhhhcCCCEEEEEEeCCChh--hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEE
Q psy14768 309 SRVYYQNSDGCIIMFDLTNRK--SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSW 386 (452)
Q Consensus 309 ~~~~i~~ad~vIlV~D~t~~~--S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~ 386 (452)
...+...+|++|+|+|+++.. +++....|+..+.... .++|+++|+||+|+.+.. ..+++.+++...+.. +
T Consensus 240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-----~~~piilV~NK~Dl~~~~-~~~~~~~~~~~~~~~-~ 312 (357)
T 2e87_A 240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-----KDLPFLVVINKIDVADEE-NIKRLEKFVKEKGLN-P 312 (357)
T ss_dssp HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-----TTSCEEEEECCTTTCCHH-HHHHHHHHHHHTTCC-C
T ss_pred HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-----CCCCEEEEEECcccCChH-HHHHHHHHHHhcCCC-e
Confidence 123455799999999999877 7888888888887652 269999999999997621 124556666666665 9
Q ss_pred EEecCCCCccHHHHHHHHHHHHHHhh
Q psy14768 387 IEVSSKEHLMIEDSMNFLVDRIICSK 412 (452)
Q Consensus 387 ~evSAktg~nv~~lf~~i~~~i~~~~ 412 (452)
++|||++|.||+++|+++.+.+....
T Consensus 313 ~~iSA~~g~gi~~l~~~i~~~l~~~~ 338 (357)
T 2e87_A 313 IKISALKGTGIDLVKEEIIKTLRPLA 338 (357)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999886543
No 133
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.76 E-value=6.9e-19 Score=180.08 Aligned_cols=156 Identities=15% Similarity=0.111 Sum_probs=113.8
Q ss_pred CCcccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhh-------h
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICM-------S 309 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~-------~ 309 (452)
...++|+++|..|+|||||+|++++..+ .....++++.+.....+.+ .+. ..+.||||+|++.|..+ .
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~---~~~-~~l~liDTpG~~d~~~l~~~~~~~~ 107 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMEL---HPI-GPVTLVDTPGLDDVGELGRLRVEKA 107 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEE---TTT-EEEEEEECSSTTCCCTTCCCCHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEE---CCC-CeEEEEECcCCCcccchhHHHHHHH
Confidence 3468999999999999999999998775 3455567777777777766 433 37899999999877654 2
Q ss_pred hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEe
Q psy14768 310 RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEV 389 (452)
Q Consensus 310 ~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~ev 389 (452)
..++..+|++|+|||++.. .....|+..+... ++|+++|+||+|+.+... .+..+++.+.+++. ++++
T Consensus 108 ~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~-------~~piIvV~NK~Dl~~~~~-~~~~~~l~~~~g~~-v~~v 175 (423)
T 3qq5_A 108 RRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM-------EIPFVVVVNKIDVLGEKA-EELKGLYESRYEAK-VLLV 175 (423)
T ss_dssp HHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT-------TCCEEEECCCCTTTTCCC-THHHHHSSCCTTCC-CCCC
T ss_pred HHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc-------CCCEEEEEeCcCCCCccH-HHHHHHHHHHcCCC-EEEE
Confidence 4578999999999999333 2334566666654 489999999999986222 25666777777775 9999
Q ss_pred cCCCCccHHHHHHHHHHHHH
Q psy14768 390 SSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~~i~ 409 (452)
||++|.|++++|+++.+.+.
T Consensus 176 SAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 176 SALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp SSCCTTSTTTHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHHhhh
Confidence 99999999999999998873
No 134
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.75 E-value=8.8e-19 Score=174.77 Aligned_cols=162 Identities=11% Similarity=0.148 Sum_probs=120.1
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch----hhhhhhhh---h
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR----YICMSRVY---Y 313 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~----~~~~~~~~---i 313 (452)
.+|+++|.+|||||||+|++++........+.++.+.....+.+ ++ ...+.||||+|+.. +..+...+ +
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~---~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i 234 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVET---DD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHI 234 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEEC---SS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEe---CC-CceEEEecCCCCcccccccchhHHHHHHHH
Confidence 58999999999999999999986543333343443333333444 32 24789999999643 33444455 4
Q ss_pred cCCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCC-CEEEEe
Q psy14768 314 QNSDGCIIMFDLTN---RKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNF-MSWIEV 389 (452)
Q Consensus 314 ~~ad~vIlV~D~t~---~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~-~~~~ev 389 (452)
+++|++|+|||+++ ..+++++..|..++..+. ....++|++||+||+|+.+. .+..+++.+.+.. .+++++
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~--~~l~~~p~ilV~NK~Dl~~~---~e~~~~l~~~l~~~~~v~~i 309 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYN--LRLTERPQIIVANKMDMPEA---AENLEAFKEKLTDDYPVFPI 309 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSC--SSTTTSCBCBEEECTTSTTH---HHHHHHHHHHCCSCCCBCCC
T ss_pred HhccEEEEEEECCcccccChHHHHHHHHHHHHHhh--hhhcCCCEEEEEECccCCCC---HHHHHHHHHHhhcCCCEEEE
Confidence 45999999999998 788999999999988761 11257999999999999751 2456677777763 348999
Q ss_pred cCCCCccHHHHHHHHHHHHHHh
Q psy14768 390 SSKEHLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~~i~~~ 411 (452)
||+++.||+++|++|.+.+.+.
T Consensus 310 SA~tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 310 SAVTREGLRELLFEVANQLENT 331 (342)
T ss_dssp SSCCSSTTHHHHHHHHHHHTSC
T ss_pred ECCCCcCHHHHHHHHHHHHhhC
Confidence 9999999999999999887543
No 135
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.75 E-value=2.4e-19 Score=185.01 Aligned_cols=152 Identities=15% Similarity=0.124 Sum_probs=101.7
Q ss_pred ccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc--------hhhhhhhh
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD--------RYICMSRV 311 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e--------~~~~~~~~ 311 (452)
.+|+++|++|||||||+|+|++.++. ....++++.|.....+.+ ....+.+|||+|++ .+..++..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~-----~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~ 78 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEW-----LNYDFNLIDTGGIDIGDEPFLAQIRQQAEI 78 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTT-----CSSCCEEEC---------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEE-----CCceEEEEECCCCCCcchhHHHHHHHHHHH
Confidence 68999999999999999999986643 444566666665555433 44568999999986 56667778
Q ss_pred hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecC
Q psy14768 312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSS 391 (452)
Q Consensus 312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSA 391 (452)
+++.+|++|+|+|++++.++.+.. +...+. ..++|++||+||+|+.+.. .+..++. .+++..++++||
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~-~~~~l~-------~~~~pvilv~NK~D~~~~~---~~~~~~~-~lg~~~~~~iSA 146 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEE-VAKILY-------RTKKPVVLAVNKLDNTEMR---ANIYDFY-SLGFGEPYPISG 146 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHH-HHHHHT-------TCCSCEEEEEECCCC--------CCCSSG-GGSSCCCEECBT
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHH-HHHHHH-------HcCCCEEEEEECccCccch---hhHHHHH-HcCCCCeEEEeC
Confidence 899999999999999988877642 222232 2468999999999987511 1111222 345545899999
Q ss_pred CCCccHHHHHHHHHHHHH
Q psy14768 392 KEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 392 ktg~nv~~lf~~i~~~i~ 409 (452)
++|.|+.++|+++.+.+.
T Consensus 147 ~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 147 THGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp TTTBTHHHHHHHHHHTGG
T ss_pred cCCCChHHHHHHHHHhcC
Confidence 999999999999988774
No 136
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.73 E-value=2e-17 Score=168.94 Aligned_cols=161 Identities=14% Similarity=0.141 Sum_probs=114.0
Q ss_pred CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEE---------------------EeeecCCeeEEEE
Q psy14768 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL---------------------SHKKYGGRPVKLQ 295 (452)
Q Consensus 237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i---------------------~~~~~~~~~~~l~ 295 (452)
....++|+++|.+|+|||||+++|++...... .+ +....+ ...........+.
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK----LG--YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRIS 78 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS----SE--EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccc----cC--ccccceeeccccccccceecccccccccccccccccceEE
Confidence 34568999999999999999999986432210 00 000000 0000011236899
Q ss_pred EEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCc---ccHH
Q psy14768 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQ---VEIN 372 (452)
Q Consensus 296 l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~---~~~e 372 (452)
||||||++.|...+..++..+|++|+|+|++++.++.....|+..+... ..+|+++|+||+|+.+.. ...+
T Consensus 79 iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~------~~~~iivviNK~Dl~~~~~~~~~~~ 152 (403)
T 3sjy_A 79 FIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII------GVKNLIIVQNKVDVVSKEEALSQYR 152 (403)
T ss_dssp EEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH------TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc------CCCCEEEEEECccccchHHHHHHHH
Confidence 9999999999999999999999999999999988777777777766654 226899999999998621 1222
Q ss_pred HHHHHHHHcC--CCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768 373 EIEAVCHQYN--FMSWIEVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 373 ~~~~~~~~~~--~~~~~evSAktg~nv~~lf~~i~~~i~ 409 (452)
++.++....+ ..+++++||++|.||+++|+++.+.+.
T Consensus 153 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 153 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 3333333322 235999999999999999999987654
No 137
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.73 E-value=1.6e-17 Score=176.80 Aligned_cols=162 Identities=15% Similarity=0.190 Sum_probs=115.4
Q ss_pred cccEEEeeecccCCcceeeeccccc--ccc-----cc--------CCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNK--FLD-----NY--------KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR 304 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~--~~~-----~~--------~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~ 304 (452)
..+|+|+|..++|||||+++|+... +.. .. ..+++.......+.+...++..+.+.||||||+..
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 3589999999999999999998521 110 00 11222222223333311145568999999999999
Q ss_pred hhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCC
Q psy14768 305 YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFM 384 (452)
Q Consensus 305 ~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~ 384 (452)
|...+..+++.+|++|+|+|++++.+++....|...+... +|+++|+||+|+.+.. ..+..+++.+.++..
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~--------ipiIvViNKiDl~~a~-~~~v~~ei~~~lg~~ 154 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMD--------LEVVPVLNKIDLPAAD-PERVAEEIEDIVGID 154 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTT--------CEEEEEEECTTSTTCC-HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCC--------CCEEEeeeccCccccc-HHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999988888776654 8999999999997521 334456677777653
Q ss_pred --EEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768 385 --SWIEVSSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 385 --~~~evSAktg~nv~~lf~~i~~~i~~ 410 (452)
.++++||++|.||+++|+++.+.+..
T Consensus 155 ~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 155 ATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp CTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred cceEEEeecccCCCchhHHHHHhhcCCC
Confidence 37999999999999999999887643
No 138
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.72 E-value=4e-17 Score=164.24 Aligned_cols=162 Identities=17% Similarity=0.139 Sum_probs=112.4
Q ss_pred ccc-EEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc---------chhhhhh
Q psy14768 240 TYP-ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ---------DRYICMS 309 (452)
Q Consensus 240 ~~k-I~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~---------e~~~~~~ 309 (452)
.++ |+++|.+|+|||||+|++++..+.....+.++.|.....+.+ ++ ..+.+|||+|+ +.|....
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~---~g--~~v~l~DT~G~i~~lp~~lve~f~~tl 252 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI---NN--RKIMLVDTVGFIRGIPPQIVDAFFVTL 252 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEE---TT--EEEEEEECCCBCSSCCGGGHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEE---CC--EEEEEEeCCCchhcCCHHHHHHHHHHH
Confidence 355 999999999999999999987766666677777777777777 55 46789999996 2233333
Q ss_pred hhhhcCCCEEEEEEeCCChh--hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcc--cHHHHHHHHHHc-C-C
Q psy14768 310 RVYYQNSDGCIIMFDLTNRK--SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQV--EINEIEAVCHQY-N-F 383 (452)
Q Consensus 310 ~~~i~~ad~vIlV~D~t~~~--S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~e~~~~~~~~~-~-~ 383 (452)
..+..+|++++|+|++++. .++.+..|...+... ...++|+++|+||+|+.+... ..+.+..+...+ . .
T Consensus 253 -~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l----~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~ 327 (364)
T 2qtf_A 253 -SEAKYSDALILVIDSTFSENLLIETLQSSFEILREI----GVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPI 327 (364)
T ss_dssp -HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH----TCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCE
T ss_pred -HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh----CcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCC
Confidence 2578999999999999887 566666676666654 335689999999999975221 112333444555 2 2
Q ss_pred CEEEEecCCCCccHHHHHHHHHHHHHHh
Q psy14768 384 MSWIEVSSKEHLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 384 ~~~~evSAktg~nv~~lf~~i~~~i~~~ 411 (452)
..++++||+++.|++++++++.+.+...
T Consensus 328 ~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 328 FDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 3479999999999999999998876544
No 139
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.72 E-value=1.8e-17 Score=171.06 Aligned_cols=152 Identities=11% Similarity=0.133 Sum_probs=108.6
Q ss_pred CCcccEEEeeecccCCcceeeeccccc-------------------------------cccccCCcceeeeEEEEEEeee
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNK-------------------------------FLDNYKNTVGVDFSTKLLSHKK 286 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~-------------------------------~~~~~~~t~~~d~~~~~i~~~~ 286 (452)
...++|+++|++|+|||||+++|+... ...+...+++.+.....+..
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-- 92 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-- 92 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec--
Confidence 345899999999999999999996421 11122245666666655544
Q ss_pred cCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhh---H----HHHHHHHHHHHhhhhhcCCCCCc-EEEE
Q psy14768 287 YGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKS---F----ESVVQWKHDLDSKCILDNGAMLP-CLLL 358 (452)
Q Consensus 287 ~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S---~----~~~~~~~~~i~~~~~~~~~~~~p-iilV 358 (452)
....+.||||||+++|...+..+++.+|++|||+|++++.. | +..+.+. .+.. .++| +|||
T Consensus 93 ---~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~-~~~~-------~~v~~iIvv 161 (439)
T 3j2k_7 93 ---EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAM-LAKT-------AGVKHLIVL 161 (439)
T ss_pred ---CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHH-HHHH-------cCCCeEEEE
Confidence 44689999999999999999999999999999999998743 1 2222222 2221 2366 9999
Q ss_pred EECCCCCC-------CcccHHHHHHHHHHcCC-----CEEEEecCCCCccHHHHHH
Q psy14768 359 ASKCDLPD-------RQVEINEIEAVCHQYNF-----MSWIEVSSKEHLMIEDSMN 402 (452)
Q Consensus 359 ~NK~Dl~~-------~~~~~e~~~~~~~~~~~-----~~~~evSAktg~nv~~lf~ 402 (452)
+||+|+.. .+...+++..++..+++ .+|+++||++|.|+.++++
T Consensus 162 iNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 162 INKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred eecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 99999953 11223445556666664 3589999999999999766
No 140
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.72 E-value=1.3e-17 Score=163.64 Aligned_cols=155 Identities=14% Similarity=0.142 Sum_probs=110.6
Q ss_pred cccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc-hh--------hhhh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD-RY--------ICMS 309 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e-~~--------~~~~ 309 (452)
..+|+++|++|+|||||+|++++..+. .+..+.++.+.....+.. ....+.+|||+|+. .. ....
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~-----~~~~i~~iDTpG~~~~~~~~l~~~~~~~~ 82 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE-----GAYQAIYVDTPGLHMEEKRAINRLMNKAA 82 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE-----TTEEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEE-----CCeeEEEEECcCCCccchhhHHHHHHHHH
Confidence 357999999999999999999987653 344454444433333322 34678999999987 32 2223
Q ss_pred hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEE
Q psy14768 310 RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIE 388 (452)
Q Consensus 310 ~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~e 388 (452)
..+++.+|++++|+|+++ .+-.+ .|+..... ..+.|+++|+||+|+.. .....+.+.++.+.+++..+++
T Consensus 83 ~~~l~~~D~vl~Vvd~~~-~~~~~--~~i~~~l~------~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~ 153 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR-WTPDD--EMVLNKLR------EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVP 153 (301)
T ss_dssp TSCCCCEEEEEEEEETTC-CCHHH--HHHHHHHH------SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred HHHHhcCCEEEEEEeCCC-CCHHH--HHHHHHHH------hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEE
Confidence 456889999999999987 44333 23322211 23589999999999975 3334455666767777766899
Q ss_pred ecCCCCccHHHHHHHHHHHH
Q psy14768 389 VSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 389 vSAktg~nv~~lf~~i~~~i 408 (452)
+||+++.|++++++.+...+
T Consensus 154 iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 154 ISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp CCTTTTTTHHHHHHHHHTTC
T ss_pred EECCCCCCHHHHHHHHHHhC
Confidence 99999999999999998654
No 141
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.72 E-value=1.1e-17 Score=174.53 Aligned_cols=158 Identities=15% Similarity=0.167 Sum_probs=110.4
Q ss_pred CcccEEEeeecccCCcceeeeccccc-------cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhh
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNK-------FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRV 311 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~-------~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~ 311 (452)
..++|+++|..++|||||+++|++.. +..+...+++.+.....+.+ + ...+.||||||++.|...+..
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~---~--~~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL---E--NYRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE---T--TEEEEECCCSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE---C--CEEEEEEECCChHHHHHHHHH
Confidence 35899999999999999999999755 33444455555554444444 3 367899999999999988888
Q ss_pred hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHHHc-C--CCE
Q psy14768 312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCHQY-N--FMS 385 (452)
Q Consensus 312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~~~-~--~~~ 385 (452)
++..+|++|||+|++++..-+..+.+. .+.. .++|+++|+||+|+.+ .+...+++.+++... + ..+
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l~-~~~~-------~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 164 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHML-ILDH-------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSS 164 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHHH-HHHH-------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCC
T ss_pred HHhhCCEEEEEEecCCCccHHHHHHHH-HHHH-------cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccce
Confidence 999999999999999854333332222 2222 2488899999999976 122344556666655 2 234
Q ss_pred EEEecCCCCccHHHHHHHHHHHHH
Q psy14768 386 WIEVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 386 ~~evSAktg~nv~~lf~~i~~~i~ 409 (452)
++++||++|.||++++++|.+.+.
T Consensus 165 ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 165 IIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHHhhc
Confidence 999999999999999999988775
No 142
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.72 E-value=3.1e-18 Score=177.38 Aligned_cols=152 Identities=17% Similarity=0.218 Sum_probs=106.2
Q ss_pred cccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhh--------h
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMS--------R 310 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~--------~ 310 (452)
.++|+++|.+|+|||||+|+|++.. .+....++++.++....+.+ ++ ..+.||||+|++.+.... .
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~---~g--~~v~liDT~G~~~~~~~ve~~gi~~~~ 298 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVV---GG--IPVQVLDTAGIRETSDQVEKIGVERSR 298 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEE---TT--EEEEECC--------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEE---CC--EEEEEEECCccccchhHHHHHHHHHHh
Confidence 5789999999999999999999854 34566688888877666666 44 567899999987654332 2
Q ss_pred hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEe
Q psy14768 311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEV 389 (452)
Q Consensus 311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~ev 389 (452)
.+++.+|++|+|||++++.++++ ..|+..+. .+|+++|+||+|+.. .... ...++. ...+++++
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~---------~~piivV~NK~Dl~~~~~~~--~~~~~~---~~~~~i~i 363 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGD-QEIYEQVK---------HRPLILVMNKIDLVEKQLIT--SLEYPE---NITQIVHT 363 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT---------TSCEEEEEECTTSSCGGGST--TCCCCT---TCCCEEEE
T ss_pred hhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc---------CCcEEEEEECCCCCcchhhH--HHHHhc---cCCcEEEE
Confidence 36789999999999999887766 33443332 269999999999976 2221 111111 23458999
Q ss_pred cCCCCccHHHHHHHHHHHHHHh
Q psy14768 390 SSKEHLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 390 SAktg~nv~~lf~~i~~~i~~~ 411 (452)
||++|.|++++|+++.+.+...
T Consensus 364 SAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 364 AAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp BTTTTBSHHHHHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999987654
No 143
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.71 E-value=2.4e-17 Score=175.19 Aligned_cols=162 Identities=17% Similarity=0.227 Sum_probs=117.4
Q ss_pred cccEEEeeecccCCcceeeecccccc-ccc------c--------CCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKF-LDN------Y--------KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR 304 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~-~~~------~--------~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~ 304 (452)
..+|+++|..++|||||+++|+.... +.. . ..+++.......+.+...++..+.+.||||||+..
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 36899999999999999999985311 100 0 01122221122222211145568999999999999
Q ss_pred hhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCC
Q psy14768 305 YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFM 384 (452)
Q Consensus 305 ~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~ 384 (452)
|...+..+++.+|++|+|||++++.+++....|....... +|+++|+||+|+.... ..+..+++.+.+++.
T Consensus 86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~--------ipiIvviNKiDl~~a~-~~~v~~el~~~lg~~ 156 (600)
T 2ywe_A 86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQD--------LVIIPVINKIDLPSAD-VDRVKKQIEEVLGLD 156 (600)
T ss_dssp GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTT--------CEEEEEEECTTSTTCC-HHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCC--------CCEEEEEeccCccccC-HHHHHHHHHHhhCCC
Confidence 9988889999999999999999999999988888776554 8999999999997522 234456666666653
Q ss_pred --EEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768 385 --SWIEVSSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 385 --~~~evSAktg~nv~~lf~~i~~~i~~ 410 (452)
.++++||++|.||+++|+++++.+..
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhccc
Confidence 37999999999999999999877643
No 144
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.71 E-value=3.4e-19 Score=187.08 Aligned_cols=159 Identities=18% Similarity=0.199 Sum_probs=120.7
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
..++|+++|.+|+|||||+++|.+..+...+.++++.++....+.. . ....+.||||||++.|..++..++..+|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~---~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~ 78 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSL---P-SGEKITFLDTPGHAAFSAMRARGTQVTDI 78 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCS---S-CSSCCBCEECSSSCCTTTSBBSSSBSBSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEe---C-CCCEEEEEECCChHHHHHHHHHHHccCCE
Confidence 3578999999999999999999988777777788887776555433 2 23368899999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--CcccHHHHHHH---HHHcC-CCEEEEecCC
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--RQVEINEIEAV---CHQYN-FMSWIEVSSK 392 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--~~~~~e~~~~~---~~~~~-~~~~~evSAk 392 (452)
+|||||++++...+..+.|..... .++|++||+||+|+.+ .....++...+ +..++ ..+|+++||+
T Consensus 79 vILVVDa~dg~~~qt~e~l~~~~~--------~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAk 150 (537)
T 3izy_P 79 VILVVAADDGVMKQTVESIQHAKD--------AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSAL 150 (537)
T ss_dssp CEEECBSSSCCCHHHHHHHHHHHT--------TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred EEEEEECCCCccHHHHHHHHHHHH--------cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECC
Confidence 999999999887777665544333 3489999999999975 11111122221 11121 2358999999
Q ss_pred CCccHHHHHHHHHHHHH
Q psy14768 393 EHLMIEDSMNFLVDRII 409 (452)
Q Consensus 393 tg~nv~~lf~~i~~~i~ 409 (452)
+|.|++++|+++...+.
T Consensus 151 tG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 151 TGENMMALAEATIALAE 167 (537)
T ss_dssp SSCSSHHHHHHHHHHHT
T ss_pred CCCCchhHHHHHHHhhh
Confidence 99999999999987654
No 145
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.70 E-value=6.4e-17 Score=165.43 Aligned_cols=161 Identities=14% Similarity=0.187 Sum_probs=103.8
Q ss_pred CcccEEEeeecccCCcceeeecccc---ccccccCCccee--eeEEEEEEe-------ee---cC--C----eeEEEEEE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQN---KFLDNYKNTVGV--DFSTKLLSH-------KK---YG--G----RPVKLQIW 297 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~---~~~~~~~~t~~~--d~~~~~i~~-------~~---~~--~----~~~~l~l~ 297 (452)
..++|+++|..++|||||+++|.+. .+..+..++++. .+....+.. .. +. + ....+.||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 4589999999999999999999853 344444454443 333322211 00 00 1 13789999
Q ss_pred ecCCcchhhhhhhhhhcCCCEEEEEEeCCChh----hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C--ccc
Q psy14768 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK----SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R--QVE 370 (452)
Q Consensus 298 DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~----S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~--~~~ 370 (452)
||+|++.|...+...+..+|++|||+|++++. +++.+.. +... ...|+++|+||+|+.+ . ...
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l------~~~~iivv~NK~Dl~~~~~~~~~ 156 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL------GIDKIIIVQNKIDLVDEKQAEEN 156 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT------TCCCEEEEEECTTSSCTTTTTTH
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc------CCCeEEEEEEccCCCCHHHHHHH
Confidence 99999999888888888999999999999653 3443332 2222 2258999999999976 2 234
Q ss_pred HHHHHHHHHHc--CCCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768 371 INEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 371 ~e~~~~~~~~~--~~~~~~evSAktg~nv~~lf~~i~~~i~ 409 (452)
.+++.+++... ...+++++||++|.||+++|++|...+.
T Consensus 157 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 157 YEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 56677776653 2234999999999999999999987554
No 146
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.70 E-value=6e-18 Score=176.75 Aligned_cols=152 Identities=14% Similarity=0.197 Sum_probs=101.6
Q ss_pred CCcccEEEeeecccCCcceeeecccccc-------------------------------ccccCCcceeeeEEEEEEeee
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKF-------------------------------LDNYKNTVGVDFSTKLLSHKK 286 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~-------------------------------~~~~~~t~~~d~~~~~i~~~~ 286 (452)
...++|+++|.+|+|||||+++|+.... ..+...+++.+.....+.
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~--- 107 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS--- 107 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEE---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEe---
Confidence 3468999999999999999999975411 111223445454444443
Q ss_pred cCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHH------HHHHHHHHhhhhhcCCCCCcEEEEEE
Q psy14768 287 YGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESV------VQWKHDLDSKCILDNGAMLPCLLLAS 360 (452)
Q Consensus 287 ~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~------~~~~~~i~~~~~~~~~~~~piilV~N 360 (452)
.....+.||||||+++|...+..+++.+|++|||||++++.++..+ ......+... ...|+|||+|
T Consensus 108 --~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~------~~~~iIvviN 179 (483)
T 3p26_A 108 --THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL------GIHNLIIAMN 179 (483)
T ss_dssp --CSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT------TCCCEEEEEE
T ss_pred --cCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc------CCCcEEEEEE
Confidence 3557899999999999999999999999999999999997654332 1111112211 2357999999
Q ss_pred CCCCCC-CcccHH----HHHHHHHHcCC----CEEEEecCCCCccHHHH
Q psy14768 361 KCDLPD-RQVEIN----EIEAVCHQYNF----MSWIEVSSKEHLMIEDS 400 (452)
Q Consensus 361 K~Dl~~-~~~~~e----~~~~~~~~~~~----~~~~evSAktg~nv~~l 400 (452)
|+|+.+ ++...+ ++..++..+++ .+|+++||++|.||.++
T Consensus 180 K~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 180 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred CcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 999976 333333 34444455554 45899999999999864
No 147
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.70 E-value=9.8e-17 Score=151.77 Aligned_cols=164 Identities=10% Similarity=0.105 Sum_probs=109.0
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCC--cceeeeEEEEEEeeecCCeeEEEEEEecCCc-----------ch
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKN--TVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ-----------DR 304 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~--t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~-----------e~ 304 (452)
...++|+++|.+|+|||||+|++++..+.....+ +++.+.....+.+ ++ ..+.||||||. +.
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~--~~i~liDTpG~~~~~~~~~~~~~~ 101 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW---KE--TELVVVDTPGIFDTEVPNAETSKE 101 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE---TT--EEEEEEECCSCC-----CHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe---CC--ceEEEEECCCccCCCCCHHHHHHH
Confidence 3468999999999999999999999777655555 5566665555555 44 56889999994 33
Q ss_pred hhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cccc------HHHHHHH
Q psy14768 305 YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVE------INEIEAV 377 (452)
Q Consensus 305 ~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~------~e~~~~~ 377 (452)
+......+++.+|++|+|+|++.... .+ ..|+..+...+. .....|++||+||+|+.+ ..+. .+.++++
T Consensus 102 ~~~~~~~~~~~~~~~l~v~d~~~~~~-~~-~~~l~~~~~~~~--~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l 177 (239)
T 3lxx_A 102 IIRCILLTSPGPHALLLVVPLGRYTE-EE-HKATEKILKMFG--ERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDL 177 (239)
T ss_dssp HHHHHHHTTTCCSEEEEEEETTCCSS-HH-HHHHHHHHHHHH--HHHGGGEEEEEECGGGC------------CHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEeeCCCCCH-HH-HHHHHHHHHHhh--hhccceEEEEEeCCccCCcccHHHHHHhchHHHHHH
Confidence 44444556778999999999976443 22 223333322110 012369999999999875 2211 2467888
Q ss_pred HHHcCCCEEEEecCCCC-----ccHHHHHHHHHHHHHHh
Q psy14768 378 CHQYNFMSWIEVSSKEH-----LMIEDSMNFLVDRIICS 411 (452)
Q Consensus 378 ~~~~~~~~~~evSAktg-----~nv~~lf~~i~~~i~~~ 411 (452)
.+.++.. |+.+++..+ .++.++|..+.+.+.+.
T Consensus 178 ~~~~~~~-~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 178 MDIFGDR-YCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp HHHHSSS-EEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCE-EEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 8888887 777777654 68899999888877553
No 148
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.69 E-value=5.1e-17 Score=155.61 Aligned_cols=166 Identities=13% Similarity=0.106 Sum_probs=110.6
Q ss_pred CCcccEEEeeecccCCcceeeeccccc-cccccCCc-ceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh--------
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNT-VGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC-------- 307 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t-~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~-------- 307 (452)
...++|+++|.+|+|||||+|++++.. +...+.++ ++.+.....+.. + ...+.||||||+..+..
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~--~~~i~iiDTpG~~~~~~~~~~~~~~ 94 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW---G--NREIVIIDTPDMFSWKDHCEALYKE 94 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE---T--TEEEEEEECCGGGGSSCCCHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe---C--CCEEEEEECcCCCCCCCCHHHHHHH
Confidence 346899999999999999999999866 55555555 566665555555 3 35689999999865431
Q ss_pred ---hhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEE-CCCCCCCcccH-------HHHHH
Q psy14768 308 ---MSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS-KCDLPDRQVEI-------NEIEA 376 (452)
Q Consensus 308 ---~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~N-K~Dl~~~~~~~-------e~~~~ 376 (452)
....+++.+|++|+|||+++. +... ..+...+...+. .....|+++|+| |+|+....... +++..
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~~-~~~~-~~~~~~l~~~~~--~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~ 170 (260)
T 2xtp_A 95 VQRCYLLSAPGPHVLLLVTQLGRY-TSQD-QQAAQRVKEIFG--EDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSK 170 (260)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTCC-CHHH-HHHHHHHHHHHC--GGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEEeCCCC-CHHH-HHHHHHHHHHhC--chhhccEEEEEEcccccCCccHHHHHHhcchHHHHH
Confidence 112367899999999999862 2111 112222332210 011356666666 99997522111 33555
Q ss_pred HHHHcCCCE--E--EEecCCCCccHHHHHHHHHHHHHHhh
Q psy14768 377 VCHQYNFMS--W--IEVSSKEHLMIEDSMNFLVDRIICSK 412 (452)
Q Consensus 377 ~~~~~~~~~--~--~evSAktg~nv~~lf~~i~~~i~~~~ 412 (452)
+...++... | +++||+++.|++++|+++.+.+....
T Consensus 171 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 171 LVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp HHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 777766431 3 78999999999999999999887643
No 149
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.69 E-value=8.8e-17 Score=164.50 Aligned_cols=162 Identities=14% Similarity=0.149 Sum_probs=110.6
Q ss_pred CCcccEEEeeecccCCcceeeeccc---cccccccCCcceeeeEEEEEEeeec------------C--C----eeEEEEE
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQ---NKFLDNYKNTVGVDFSTKLLSHKKY------------G--G----RPVKLQI 296 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~---~~~~~~~~~t~~~d~~~~~i~~~~~------------~--~----~~~~l~l 296 (452)
...++|+++|..++|||||+++|++ +.+..+...+++.+.......+... . + ....+.|
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 3458999999999999999999985 3344444454444332222221100 0 1 1378999
Q ss_pred EecCCcchhhhhhhhhhcCCCEEEEEEeCCChh----hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C--cc
Q psy14768 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK----SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R--QV 369 (452)
Q Consensus 297 ~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~----S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~--~~ 369 (452)
|||||++.|...+...+..+|++|||+|++++. +++.+.. +... ...|+++|+||+|+.+ . ..
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~------~~~~iivviNK~Dl~~~~~~~~ 157 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQII------GQKNIIIAQNKIELVDKEKALE 157 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHH------TCCCEEEEEECGGGSCHHHHHH
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc------CCCcEEEEEECccCCCHHHHHH
Confidence 999999999888888888999999999999653 3333332 2222 1268999999999986 2 12
Q ss_pred cHHHHHHHHHHc--CCCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768 370 EINEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 370 ~~e~~~~~~~~~--~~~~~~evSAktg~nv~~lf~~i~~~i~ 409 (452)
..+++.+++... ...+++++||++|.||+++|++|...+.
T Consensus 158 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 158 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 344555555542 2335999999999999999999987554
No 150
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.69 E-value=3.8e-17 Score=171.87 Aligned_cols=114 Identities=11% Similarity=0.115 Sum_probs=86.3
Q ss_pred cccEEEeeecccCCcceeeeccccc-----------------ccc-----ccCCcceeeeEEEEEEeeecCCeeEEEEEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNK-----------------FLD-----NYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~-----------------~~~-----~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~ 297 (452)
..+|+|+|.+|+|||||+++|+... ... +...+++.......+.+ ..+.+.||
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-----~~~~i~li 87 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-----KDYLINLL 87 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-----TTEEEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-----CCEEEEEE
Confidence 4689999999999999999996210 000 11123333333334433 45789999
Q ss_pred ecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366 (452)
Q Consensus 298 DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~ 366 (452)
||||++.|...+..+++.+|++|+|+|++++.+.+....|...... ++|+++|+||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~--------~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR--------HTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT--------TCCEEEEEECTTSCC
T ss_pred ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc--------CCCEEEEEeCCCCcc
Confidence 9999999999999999999999999999999888888777544333 489999999999964
No 151
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.68 E-value=4.8e-17 Score=165.77 Aligned_cols=156 Identities=13% Similarity=0.121 Sum_probs=112.6
Q ss_pred cccEEEeeecccCCcceeeeccccc-------cc---------cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNK-------FL---------DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~-------~~---------~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e 303 (452)
.++|+++|.+++|||||+++|++.. +. .+...+++.+..... + ......+.||||||++
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~--~---~~~~~~~~iiDtpG~~ 77 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE--Y---STAARHYAHTDCPGHA 77 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEE--E---ECSSCEEEEEECSSHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEE--e---ccCCeEEEEEECCChH
Confidence 4789999999999999999998631 11 001223344433222 2 3445678999999999
Q ss_pred hhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCC-C---cccHHHHHHHH
Q psy14768 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPD-R---QVEINEIEAVC 378 (452)
Q Consensus 304 ~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~-~---~~~~e~~~~~~ 378 (452)
+|...+..++..+|++|+|+|++++...+..+.| ..+... ++| +++|+||+|+.+ . +...+++.+++
T Consensus 78 ~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~-------~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l 149 (397)
T 1d2e_A 78 DYVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI-------GVEHVVVYVNKADAVQDSEMVELVELEIRELL 149 (397)
T ss_dssp HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT-------TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc-------CCCeEEEEEECcccCCCHHHHHHHHHHHHHHH
Confidence 9988888899999999999999998766665555 333322 378 789999999974 1 12235677788
Q ss_pred HHcCC----CEEEEecCCCCcc----------HHHHHHHHHHHH
Q psy14768 379 HQYNF----MSWIEVSSKEHLM----------IEDSMNFLVDRI 408 (452)
Q Consensus 379 ~~~~~----~~~~evSAktg~n----------v~~lf~~i~~~i 408 (452)
..+++ .+|+++||++|.| +.++|+.+.+.+
T Consensus 150 ~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 150 TEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp HHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred HHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 87774 4699999999775 788888776644
No 152
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.68 E-value=3e-17 Score=167.71 Aligned_cols=145 Identities=17% Similarity=0.156 Sum_probs=105.1
Q ss_pred CcccEEEeeecccCCcceeeecccc--------cccc---------ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQN--------KFLD---------NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~--------~~~~---------~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG 301 (452)
..++|+++|.+|+|||||+++|++. .+.. +...+++.+..... + +.....+.||||||
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~--~---~~~~~~~~iiDtpG 84 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVE--Y---ETAKRHYSHVDCPG 84 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEE--E---ECSSCEEEEEECCC
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeE--e---ccCCeEEEEEECCC
Confidence 4589999999999999999999863 1110 01223444443333 3 33456789999999
Q ss_pred cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCC-C---cccHHHHHH
Q psy14768 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPD-R---QVEINEIEA 376 (452)
Q Consensus 302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~-~---~~~~e~~~~ 376 (452)
+++|...+..++..+|++|+|+|++++...+..+ |+..+... ++| +++|+||+|+.+ . +...+++.+
T Consensus 85 ~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~-~l~~~~~~-------~ip~iivviNK~Dl~~~~~~~~~~~~~~~~ 156 (405)
T 2c78_A 85 HADYIKNMITGAAQMDGAILVVSAADGPMPQTRE-HILLARQV-------GVPYIVVFMNKVDMVDDPELLDLVEMEVRD 156 (405)
T ss_dssp SGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHH-HHHHHHHT-------TCCCEEEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHH-HHHHHHHc-------CCCEEEEEEECccccCcHHHHHHHHHHHHH
Confidence 9999988888999999999999999987665543 44444332 378 899999999974 1 122345667
Q ss_pred HHHHcCC----CEEEEecCCCCcc
Q psy14768 377 VCHQYNF----MSWIEVSSKEHLM 396 (452)
Q Consensus 377 ~~~~~~~----~~~~evSAktg~n 396 (452)
++..+++ .+++++||++|.|
T Consensus 157 ~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 157 LLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp HHHHTTSCTTTSCEEECCHHHHHH
T ss_pred HHHHhcccccCCCEEEccHHHhhh
Confidence 7777774 4699999999988
No 153
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.67 E-value=4.1e-17 Score=157.91 Aligned_cols=156 Identities=18% Similarity=0.270 Sum_probs=92.6
Q ss_pred CcccEEEeeecccCCcceeeecccc-cccccc-------CCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc-------
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQN-KFLDNY-------KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD------- 303 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~-~~~~~~-------~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e------- 303 (452)
..++|+++|.+|+|||||+|++++. .+...+ .+|++.+.....+.. ++..+.+.||||+|+.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~liDTpG~~d~~~~~~ 83 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE---GGVQLLLTIVDTPGFGDAVDNSN 83 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC-----CCEEEEEEECCCCSCCSCCTT
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec---CCeEEEEEEEECCCccccccchh
Confidence 3589999999999999999998764 444444 577777777766655 6667899999999973
Q ss_pred hhhhhh-------hhhhc-------------CCCEEEEEEeCCC-hhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECC
Q psy14768 304 RYICMS-------RVYYQ-------------NSDGCIIMFDLTN-RKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362 (452)
Q Consensus 304 ~~~~~~-------~~~i~-------------~ad~vIlV~D~t~-~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~ 362 (452)
.+..+. ..++. ++|+++++++.+. ...-.+ ..++..+.. ++|+|+|+||+
T Consensus 84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d-~~~l~~l~~--------~~pvi~V~nK~ 154 (274)
T 3t5d_A 84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IEFMKRLHE--------KVNIIPLIAKA 154 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHH-HHHHHHHTT--------TSCEEEEESSG
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHH-HHHHHHHhc--------cCCEEEEEecc
Confidence 233332 23333 3789999998765 223233 223444432 49999999999
Q ss_pred CCCC-C--cccHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHH
Q psy14768 363 DLPD-R--QVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 363 Dl~~-~--~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~ 407 (452)
|+.. . ....+.+.+.+...++. ++.+||+++.++.++++++.+.
T Consensus 155 D~~~~~e~~~~~~~i~~~l~~~~i~-v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 155 DTLTPEECQQFKKQIMKEIQEHKIK-IYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHTTCC-CCCC-----------CHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCe-EEcCCCCCChhHHHHHHHHhcC
Confidence 9875 1 12223445555566776 8889999999999999888754
No 154
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.67 E-value=7.2e-18 Score=173.85 Aligned_cols=158 Identities=13% Similarity=0.232 Sum_probs=107.3
Q ss_pred CcccEEEeeecccCCcceeeecccc--cccc-----------------------------ccCCcceeeeEEEEEEeeec
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQN--KFLD-----------------------------NYKNTVGVDFSTKLLSHKKY 287 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~--~~~~-----------------------------~~~~t~~~d~~~~~i~~~~~ 287 (452)
..++|+++|.+++|||||+++|+.. .+.. +...+++.+.....+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~----- 79 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF----- 79 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE-----
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEE-----
Confidence 4589999999999999999999864 2211 012344444443333
Q ss_pred CCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCC-CcEEEEEECCCCCC
Q psy14768 288 GGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM-LPCLLLASKCDLPD 366 (452)
Q Consensus 288 ~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~-~piilV~NK~Dl~~ 366 (452)
+.....+.||||||+++|...+..++..+|++|+|||+++ .+|+....|..+...+.......+ .++|||+||+|+.+
T Consensus 80 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 80 ETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp ECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred ecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence 3355679999999999999988899999999999999999 677765444333333211101122 46999999999975
Q ss_pred C-------cccHHHHHHHHHHcCC----CEEEEecCCCCccHHHHHH
Q psy14768 367 R-------QVEINEIEAVCHQYNF----MSWIEVSSKEHLMIEDSMN 402 (452)
Q Consensus 367 ~-------~~~~e~~~~~~~~~~~----~~~~evSAktg~nv~~lf~ 402 (452)
. +...+++.+++..+++ .+|+++||++|.|+.+++.
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 1 1224567777777774 4699999999999986654
No 155
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.3e-17 Score=149.99 Aligned_cols=117 Identities=19% Similarity=0.222 Sum_probs=87.3
Q ss_pred CCcccEEEeeecccCCcceeeecccccccc---ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhc
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLD---NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQ 314 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~---~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~ 314 (452)
...++|+++|.+|+|||||++++++..+.. .+.++++.++ ..+.+.+|||+|++.+...+..++.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~------------~~~~~~l~Dt~G~~~~~~~~~~~~~ 113 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY------------DGSGVTLVDFPGHVKLRYKLSDYLK 113 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC------------CCTTCSEEEETTCCBSSCCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee------------cCCeEEEEECCCCchHHHHHHHHHH
Confidence 346899999999999999999999876543 2333333222 3456889999999998877777766
Q ss_pred C----CCEEEEEEeCC-ChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768 315 N----SDGCIIMFDLT-NRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366 (452)
Q Consensus 315 ~----ad~vIlV~D~t-~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~ 366 (452)
. +|++|+|||++ +..++..+..|+..+..........++|++||+||+|+.+
T Consensus 114 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 114 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 170 (193)
T ss_dssp HHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred hhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence 5 89999999999 8999999988887776542111235799999999999976
No 156
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.67 E-value=1e-17 Score=163.37 Aligned_cols=159 Identities=16% Similarity=0.143 Sum_probs=104.0
Q ss_pred CcccEEEeeecccCCcceeeeccccccc------cccCCc----------------------ceeee-------------
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFL------DNYKNT----------------------VGVDF------------- 277 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~------~~~~~t----------------------~~~d~------------- 277 (452)
..++|+++|.+|+|||||+|+|++..+. .+..|+ ++.+.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999987763 233333 11110
Q ss_pred --------EEEEEEeeecCCeeEEEEEEecCCcc-------------hhhhhhhhhhcCCCEEE-EEEeCCChhhHHHHH
Q psy14768 278 --------STKLLSHKKYGGRPVKLQIWDIAGQD-------------RYICMSRVYYQNSDGCI-IMFDLTNRKSFESVV 335 (452)
Q Consensus 278 --------~~~~i~~~~~~~~~~~l~l~DtaG~e-------------~~~~~~~~~i~~ad~vI-lV~D~t~~~S~~~~~ 335 (452)
....+.+. ......+.||||||+. .+..+...+++.++.+| +|+|+++..+.++..
T Consensus 105 g~~~gi~~~~~~~~~~--~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 105 GTNKGISPVPINLRVY--SPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp SSTTCCCSCCEEEEEE--ETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred ccCCCccccceEEEEe--CCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 00000010 1113578999999964 34556677888998777 699999876666544
Q ss_pred HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHH--cCCCEEEEecCCCCccHHHHHHHHHH
Q psy14768 336 QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQ--YNFMSWIEVSSKEHLMIEDSMNFLVD 406 (452)
Q Consensus 336 ~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~--~~~~~~~evSAktg~nv~~lf~~i~~ 406 (452)
.|...+. ..+.|+++|+||+|+.+ .....+.++..... .++.+++++||++|.|++++|+++.+
T Consensus 183 ~~~~~~~-------~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 183 KIAKEVD-------PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHHHHHC-------TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHHHHhC-------CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 4444443 23589999999999976 22222222211011 13345789999999999999999887
No 157
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.66 E-value=2.6e-17 Score=170.70 Aligned_cols=153 Identities=14% Similarity=0.095 Sum_probs=102.6
Q ss_pred cccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC--------cchhhhhhh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG--------QDRYICMSR 310 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG--------~e~~~~~~~ 310 (452)
..+|+++|++|||||||+|+|++.++. ....++++.+.....+ ......+.+|||+| ++.+..+..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~-----~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 97 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSA-----EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE 97 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEEC-----TTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEE-----EECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence 478999999999999999999986653 3444555555544443 44556789999999 777778888
Q ss_pred hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEec
Q psy14768 311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVS 390 (452)
Q Consensus 311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evS 390 (452)
.+++.+|++|+|+|+.++.+..+. |+..+.+ ..++|++||+||+|+.+.. +...++ ..+++...+++|
T Consensus 98 ~~~~~ad~il~VvD~~~~~~~~d~--~l~~~l~------~~~~pvilV~NK~D~~~~~---~~~~e~-~~lg~~~~~~iS 165 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVTAADE--EVAKILY------RTKKPVVLAVNKLDNTEMR---ANIYDF-YSLGFGEPYPIS 165 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSCHHHH--HHHHHHT------TCCSCEEEEEECC------------CCS-GGGSSSSEEECC
T ss_pred hhHhhCCEEEEEEeCCCCCChHHH--HHHHHHH------HcCCCEEEEEECccchhhh---hhHHHH-HHcCCCceEEee
Confidence 899999999999999886665553 2222222 2469999999999986411 111111 133454468999
Q ss_pred CCCCccHHHHHHHHHHHHH
Q psy14768 391 SKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 391 Aktg~nv~~lf~~i~~~i~ 409 (452)
|++|.|+.++|+.+.+.+.
T Consensus 166 A~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 166 GTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp TTTCTTHHHHHHHHHTTGG
T ss_pred cccccchHHHHHHHHhhcc
Confidence 9999999999999987653
No 158
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.66 E-value=2.6e-16 Score=149.95 Aligned_cols=165 Identities=10% Similarity=0.084 Sum_probs=106.7
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCc--ceeeeEEEEEEeeecCCeeEEEEEEecCCc--------chhhh
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNT--VGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ--------DRYIC 307 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t--~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~--------e~~~~ 307 (452)
...++|+++|.+|+|||||+|++++..+.....++ ++.+.....+.. + ...+.||||||. +.+..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~---~--~~~i~liDTPG~~~~~~~~~~~~~~ 93 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW---D--KCHVEVVDTPDIFSSQVSKTDPGCE 93 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE---T--TEEEEEEECCSCSSTTHHHHSTTSH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE---C--CcEEEEEECCCCCCCCCCcHHHHHH
Confidence 45689999999999999999999986655433222 444444444444 3 466889999996 33333
Q ss_pred hhhhhh----cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCc-------ccHHHHHH
Q psy14768 308 MSRVYY----QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQ-------VEINEIEA 376 (452)
Q Consensus 308 ~~~~~i----~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~-------~~~e~~~~ 376 (452)
....++ +.+|++|+|+|+++ .+..+. .++..+...++ ....+.|+|||+||+|+.+.. ...+.++.
T Consensus 94 ~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~-~~~~~l~~~~~-~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~ 170 (247)
T 3lxw_A 94 ERGHCYLLSAPGPHALLLVTQLGR-FTAQDQ-QAVRQVRDMFG-EDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRE 170 (247)
T ss_dssp HHHHHHHHHTTCCSEEEEEEETTB-CCHHHH-HHHHHHHHHHC-GGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEEeCCC-CCHHHH-HHHHHHHHHhC-hhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHH
Confidence 233333 89999999999985 332222 22333333210 011258999999999996511 11145678
Q ss_pred HHHHcCCCEEEEecCCC-----CccHHHHHHHHHHHHHHh
Q psy14768 377 VCHQYNFMSWIEVSSKE-----HLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 377 ~~~~~~~~~~~evSAkt-----g~nv~~lf~~i~~~i~~~ 411 (452)
+.+.++.. |+.+++.. +.+|.+||+.|.+.+.+.
T Consensus 171 l~~~~g~~-~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 171 LVAECGGR-VCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp HHHHTTTC-EEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCe-EEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 88888877 66666554 589999999998888764
No 159
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.65 E-value=3.3e-16 Score=153.64 Aligned_cols=133 Identities=17% Similarity=0.189 Sum_probs=109.3
Q ss_pred ceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh-hHH
Q psy14768 255 SYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK-SFE 332 (452)
Q Consensus 255 SLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~-S~~ 332 (452)
+|+.+++.+.|. ..+.||+|..+. ..+ .... .+++||| +++|..++..+++++|++|+|||++++. +|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~-----~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~ 102 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTP-----DETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTY 102 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EEC-----CCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEE-----cCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHH
Confidence 799999999998 889999995543 332 2222 6889999 9999999999999999999999999987 789
Q ss_pred HHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcC--CCEEEEecCCCCccHHHHHHHHHH
Q psy14768 333 SVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYN--FMSWIEVSSKEHLMIEDSMNFLVD 406 (452)
Q Consensus 333 ~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~--~~~~~evSAktg~nv~~lf~~i~~ 406 (452)
.+..|+..+... ++|++||+||+||.+ +.+ ++++++++.++ .. |++|||++|.||+++|..+..
T Consensus 103 ~l~~~l~~~~~~-------~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~-~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 103 IIDKFLVLAEKN-------ELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYP-IVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHHHHT-------TCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSC-EEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHHHHHC-------CCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCc-EEEEECCCCcCHHHHHHHhcC
Confidence 899998877543 589999999999976 322 45677777766 55 999999999999999987653
No 160
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=1.8e-17 Score=166.70 Aligned_cols=159 Identities=14% Similarity=0.254 Sum_probs=90.9
Q ss_pred cccEEEeeecccCCcceeeecccc-ccccccC--------CcceeeeEEEEEEeeecCCeeEEEEEEecCCc-------c
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQN-KFLDNYK--------NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ-------D 303 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~-~~~~~~~--------~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~-------e 303 (452)
.++|+++|.+|+|||||+|++++. .+...+. +|++.++....+.. ++..+.+.+|||+|+ +
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~---~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEE---RGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC-------CEEEEEEEEC------------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeec---CCcccceEEEEeccccccCccHH
Confidence 488999999999999999997763 3333332 45555554444443 566678999999998 6
Q ss_pred hhhhhhh-------hhhcCCCEE-----------EEEEeCCC-hhhHHHHHH-HHHHHHhhhhhcCCCCCcEEEEEECCC
Q psy14768 304 RYICMSR-------VYYQNSDGC-----------IIMFDLTN-RKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKCD 363 (452)
Q Consensus 304 ~~~~~~~-------~~i~~ad~v-----------IlV~D~t~-~~S~~~~~~-~~~~i~~~~~~~~~~~~piilV~NK~D 363 (452)
.|..++. .+++.++++ ++||++++ ..++..+.. |+..+. .++|+|+|+||+|
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~--------~~~piIlV~NK~D 185 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH--------NKVNIVPVIAKAD 185 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC--------S-SCEEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc--------cCCCEEEEEECCC
Confidence 6766665 555544332 35666654 455555543 433332 4589999999999
Q ss_pred CCC-CcccH--HHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHh
Q psy14768 364 LPD-RQVEI--NEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 364 l~~-~~~~~--e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i~~~ 411 (452)
+.. +++.. +++.+++...++. |+++||+++.+ ++.|.++++.+...
T Consensus 186 l~~~~ev~~~k~~i~~~~~~~~i~-~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 186 TLTLKERERLKKRILDEIEEHNIK-IYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp SSCHHHHHHHHHHHHHHTTCC-CC-SCCCC----------CHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCC-EEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 986 33333 4666777777776 89999999999 89999988888654
No 161
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.65 E-value=8.9e-17 Score=165.66 Aligned_cols=152 Identities=13% Similarity=0.146 Sum_probs=105.4
Q ss_pred cccEEEeeecccCCcceeeeccccc--cccc----------cCCc---------------------ceeeeEEEEEEeee
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNK--FLDN----------YKNT---------------------VGVDFSTKLLSHKK 286 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~--~~~~----------~~~t---------------------~~~d~~~~~i~~~~ 286 (452)
.++|+++|.+++|||||+++|+.+. +... ..++ ++.+.....+
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~---- 99 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF---- 99 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE----
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe----
Confidence 4899999999999999999998643 1111 1112 2222222222
Q ss_pred cCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768 287 YGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366 (452)
Q Consensus 287 ~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~ 366 (452)
......+.||||||++.|...+..++..+|++|||||++++...+..+ ++..+... ...|+|+|+||+|+.+
T Consensus 100 -~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~-~l~~~~~~------~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 100 -STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRR-HSYIASLL------GIKHIVVAINKMDLNG 171 (434)
T ss_dssp -ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHH-HHHHHHHT------TCCEEEEEEECTTTTT
T ss_pred -ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHHHc------CCCeEEEEEEcCcCCc
Confidence 334567999999999999988888999999999999999976555443 33333322 1246999999999975
Q ss_pred -Cc----ccHHHHHHHHHHcC--C--CEEEEecCCCCccHHHHHHH
Q psy14768 367 -RQ----VEINEIEAVCHQYN--F--MSWIEVSSKEHLMIEDSMNF 403 (452)
Q Consensus 367 -~~----~~~e~~~~~~~~~~--~--~~~~evSAktg~nv~~lf~~ 403 (452)
.+ ...+++.++++.++ . .+++++||++|.|+.++|+.
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 172 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 11 12345666777777 2 45899999999999986543
No 162
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.65 E-value=1.4e-16 Score=157.43 Aligned_cols=135 Identities=13% Similarity=0.068 Sum_probs=103.5
Q ss_pred cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCC----------ChhhHHHHHHHH
Q psy14768 269 YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLT----------NRKSFESVVQWK 338 (452)
Q Consensus 269 ~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t----------~~~S~~~~~~~~ 338 (452)
..+|+|... ..+.+ +.+.+++|||+||++++.+|..||++++++|+|||++ +..++++...|+
T Consensus 151 r~~TiGi~~--~~~~~-----~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~ 223 (327)
T 3ohm_A 151 RVPTTGIIE--YPFDL-----QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALF 223 (327)
T ss_dssp CCCCCSEEE--EEEEE-----TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHH
T ss_pred cCceeeEEE--EEEEe-----eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHH
Confidence 567788543 33333 4588999999999999999999999999999999765 455666666666
Q ss_pred HHHHhhhhhcCCCCCcEEEEEECCCCCC-C----------------cccHHHHHHHHHH---------cCCCEEEEecCC
Q psy14768 339 HDLDSKCILDNGAMLPCLLLASKCDLPD-R----------------QVEINEIEAVCHQ---------YNFMSWIEVSSK 392 (452)
Q Consensus 339 ~~i~~~~~~~~~~~~piilV~NK~Dl~~-~----------------~~~~e~~~~~~~~---------~~~~~~~evSAk 392 (452)
..+... ....+.|++||+||+|+.+ + ..+.+++.+++.. .....+++|||+
T Consensus 224 ~~i~~~---~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~ 300 (327)
T 3ohm_A 224 RTIITY---PWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCAT 300 (327)
T ss_dssp HHHHTS---GGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTT
T ss_pred HHHhhh---hccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEee
Confidence 655443 2446799999999999854 2 4677888877532 122347999999
Q ss_pred CCccHHHHHHHHHHHHHHhhh
Q psy14768 393 EHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 393 tg~nv~~lf~~i~~~i~~~~~ 413 (452)
++.||+++|..+.+.+++.+.
T Consensus 301 d~~nV~~vF~~v~~~Il~~~l 321 (327)
T 3ohm_A 301 DTENIRFVFAAVKDTILQLNL 321 (327)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999987653
No 163
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.65 E-value=4.7e-16 Score=143.30 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=100.8
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch----------hhhh
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR----------YICM 308 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~----------~~~~ 308 (452)
...+|+++|++|+|||||+|++++..+.....++.|.......+.+ ++ .+.+|||+|+.. +...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~---~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV---AD---GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEE---ET---TEEEEECCCCC------CCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEe---cC---CEEEEECcCCcccccCHHHHHHHHHH
Confidence 3578999999999999999999987654444455554433333333 22 467999999742 3333
Q ss_pred hhhhh---cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHHHcC
Q psy14768 309 SRVYY---QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCHQYN 382 (452)
Q Consensus 309 ~~~~i---~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~~~~ 382 (452)
...++ ..++++++|+|++++.++.+... ...+.. .++|+++|+||+|+.. ++...+.+..++...+
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~-~~~~~~-------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~ 170 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQM-IEWAVD-------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFN 170 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHH-HHHHHH-------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHhhhcccEEEEEEECCCCCchhHHHH-HHHHHH-------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcC
Confidence 33344 57899999999998776654221 111221 2489999999999876 2222455666666655
Q ss_pred C-CEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768 383 F-MSWIEVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 383 ~-~~~~evSAktg~nv~~lf~~i~~~i~ 409 (452)
. ..++++||+++.+++++++.+.+.+.
T Consensus 171 ~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 171 GDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp SCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 3 34789999999999999999987654
No 164
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.64 E-value=6.1e-17 Score=167.94 Aligned_cols=149 Identities=9% Similarity=0.108 Sum_probs=105.6
Q ss_pred CcccEEEeeecccCCcceeeeccccc--ccc-----------------------------ccCCcceeeeEEEEEEeeec
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNK--FLD-----------------------------NYKNTVGVDFSTKLLSHKKY 287 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~--~~~-----------------------------~~~~t~~~d~~~~~i~~~~~ 287 (452)
..++|+++|.+|+|||||+++|+.+. +.. +...+++.+.....+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~---- 81 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE---- 81 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE----
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe----
Confidence 35899999999999999999998641 110 0013444444444433
Q ss_pred CCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh---hH----HHHHHHHHHHHhhhhhcCCCCCc-EEEEE
Q psy14768 288 GGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK---SF----ESVVQWKHDLDSKCILDNGAMLP-CLLLA 359 (452)
Q Consensus 288 ~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~---S~----~~~~~~~~~i~~~~~~~~~~~~p-iilV~ 359 (452)
.....+.||||||+++|...+..++..+|++|||||++++. +| +..+.+. .+.. .++| +|||+
T Consensus 82 -~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~-~~~~-------~~v~~iivvi 152 (458)
T 1f60_A 82 -TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LAFT-------LGVRQLIVAV 152 (458)
T ss_dssp -CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HHHH-------TTCCEEEEEE
T ss_pred -cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHH-HHHH-------cCCCeEEEEE
Confidence 34567999999999999998889999999999999999864 33 3333332 2222 2355 99999
Q ss_pred ECCCCCC-C----cccHHHHHHHHHHcCC----CEEEEecCCCCccHHHH
Q psy14768 360 SKCDLPD-R----QVEINEIEAVCHQYNF----MSWIEVSSKEHLMIEDS 400 (452)
Q Consensus 360 NK~Dl~~-~----~~~~e~~~~~~~~~~~----~~~~evSAktg~nv~~l 400 (452)
||+|+.+ . +...+++.+++..+++ .+|+++||++|.|+.++
T Consensus 153 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 153 NKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred EccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 9999973 1 1233456667777775 45999999999999755
No 165
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.64 E-value=4.8e-18 Score=176.89 Aligned_cols=155 Identities=15% Similarity=0.201 Sum_probs=110.8
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG 318 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~ 318 (452)
...+|+++|.+++|||||+++|.+..+.....++++.+.....+.+ ++ ..+.||||||++.|..++..++..+|+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~---~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~ 77 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVET---EN--GMITFLDTPGHAAFTSMRARGAQATDI 77 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCT---TS--SCCCEECCCTTTCCTTSBCSSSBSCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEE---CC--EEEEEEECCCcHHHHHHHHHHHhhCCE
Confidence 3578999999999999999999987666666566666655444333 33 467899999999999999899999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHH--HHHHHHHHcC-CCEEEEecCC
Q psy14768 319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEIN--EIEAVCHQYN-FMSWIEVSSK 392 (452)
Q Consensus 319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e--~~~~~~~~~~-~~~~~evSAk 392 (452)
+|||||++++...+..+.|..... .++|+++|+||+|+.+ ..+..+ +...+.+.++ ..+|+++||+
T Consensus 78 aILVVda~~g~~~qT~e~l~~~~~--------~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAk 149 (501)
T 1zo1_I 78 VVLVVAADDGVMPQTIEAIQHAKA--------AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAK 149 (501)
T ss_dssp EEEEEETTTBSCTTTHHHHHHHHH--------TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTT
T ss_pred EEEEeecccCccHHHHHHHHHHHh--------cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeee
Confidence 999999998644343333322222 2489999999999964 111000 0000111222 2469999999
Q ss_pred CCccHHHHHHHHHH
Q psy14768 393 EHLMIEDSMNFLVD 406 (452)
Q Consensus 393 tg~nv~~lf~~i~~ 406 (452)
+|.||+++|++++.
T Consensus 150 tG~gI~eLle~I~~ 163 (501)
T 1zo1_I 150 AGTGIDELLDAILL 163 (501)
T ss_dssp TCTTCTTHHHHTTT
T ss_pred eccCcchhhhhhhh
Confidence 99999999999874
No 166
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.64 E-value=3.7e-16 Score=166.40 Aligned_cols=164 Identities=15% Similarity=0.146 Sum_probs=106.6
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeee-------------cCCeeEEEEEEecCCcchh
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK-------------YGGRPVKLQIWDIAGQDRY 305 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~-------------~~~~~~~l~l~DtaG~e~~ 305 (452)
..++|+++|.+++|||||++++++..+......+++.+.....+.... .+.....+.||||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 357899999999999999999997655433222333222222222100 0011225899999999999
Q ss_pred hhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Ccc-------------cH
Q psy14768 306 ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQV-------------EI 371 (452)
Q Consensus 306 ~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~-------------~~ 371 (452)
..++..+++.+|++|||||++++..-+....|.. +.. .++|+++|+||+|+.. ... ..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~-l~~-------~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI-LRM-------YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH-HHH-------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH-HHH-------cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 9999999999999999999999433333333322 222 2489999999999964 110 00
Q ss_pred -------H---HHHHHHHHcCC--------------CEEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768 372 -------N---EIEAVCHQYNF--------------MSWIEVSSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 372 -------e---~~~~~~~~~~~--------------~~~~evSAktg~nv~~lf~~i~~~i~~ 410 (452)
+ +....+...++ .+++++||++|.||+++++++...+..
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 0 11111222222 268999999999999999999887653
No 167
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.64 E-value=3.7e-16 Score=157.57 Aligned_cols=147 Identities=9% Similarity=-0.005 Sum_probs=107.6
Q ss_pred cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII 321 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl 321 (452)
+|+++|.+++|||||+++|+ ..+++.+.....+ ......+.||||||+++|...+...++.+|++||
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~-----~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ail 89 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNN-----DKEGRNMVFVDAHSYPKTLKSLITALNISDIAVL 89 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEE-----CSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEE-----ecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEE
Confidence 89999999999999999998 2233334443333 3344569999999999998888888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcE-EEEEE-CCCCCC-Ccc--cHHHHHHHHHHcC--CCEEEE--ecCC
Q psy14768 322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC-LLLAS-KCDLPD-RQV--EINEIEAVCHQYN--FMSWIE--VSSK 392 (452)
Q Consensus 322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~pi-ilV~N-K~Dl~~-~~~--~~e~~~~~~~~~~--~~~~~e--vSAk 392 (452)
|+| +++. +.....++..+... ++|. |+|+| |+|+ + ... ..+++++++...+ ..++++ +||+
T Consensus 90 Vvd-~~g~-~~qt~e~~~~~~~~-------~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~ 159 (370)
T 2elf_A 90 CIP-PQGL-DAHTGECIIALDLL-------GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKS 159 (370)
T ss_dssp EEC-TTCC-CHHHHHHHHHHHHT-------TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTT
T ss_pred EEc-CCCC-cHHHHHHHHHHHHc-------CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence 999 6543 33444455444433 3676 89999 9999 5 211 1245555555544 246899 9999
Q ss_pred C---CccHHHHHHHHHHHHHHh
Q psy14768 393 E---HLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 393 t---g~nv~~lf~~i~~~i~~~ 411 (452)
+ +.|++++|+.+.+.+...
T Consensus 160 ~~~~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 160 AKNPFEGVDELKARINEVAEKI 181 (370)
T ss_dssp SSSTTTTHHHHHHHHHHHHHHH
T ss_pred cCcCCCCHHHHHHHHHhhcccc
Confidence 9 999999999998887654
No 168
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.64 E-value=3.7e-16 Score=156.36 Aligned_cols=134 Identities=12% Similarity=0.103 Sum_probs=105.2
Q ss_pred cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCC----------hhhHHHHHHHH
Q psy14768 269 YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTN----------RKSFESVVQWK 338 (452)
Q Consensus 269 ~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~----------~~S~~~~~~~~ 338 (452)
..+|+|.+. ..+.+ ..+.+.+|||+||+.|+.+|..+|++++++|+|||+++ ..++++...|+
T Consensus 177 ~~~T~Gi~~--~~~~~-----~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~ 249 (353)
T 1cip_A 177 RVKTTGIVE--THFTF-----KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249 (353)
T ss_dssp CCCCCSEEE--EEEEE-----TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHH
T ss_pred cCceeceEE--EEEee-----CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHH
Confidence 345666543 33444 36889999999999999999999999999999999999 45678777777
Q ss_pred HHHHhhhhhcCCCCCcEEEEEECCCCCC-C---------------cccHHHHHHHHHH----------cCCCEEEEecCC
Q psy14768 339 HDLDSKCILDNGAMLPCLLLASKCDLPD-R---------------QVEINEIEAVCHQ----------YNFMSWIEVSSK 392 (452)
Q Consensus 339 ~~i~~~~~~~~~~~~piilV~NK~Dl~~-~---------------~~~~e~~~~~~~~----------~~~~~~~evSAk 392 (452)
..+... ....+.|+|||+||+|+.+ + .+..+++.+++.. .....|++|||+
T Consensus 250 ~~i~~~---~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~ 326 (353)
T 1cip_A 250 DSICNN---KWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCAT 326 (353)
T ss_dssp HHHHTC---GGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTT
T ss_pred HHHHcC---ccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECc
Confidence 776653 1346799999999999853 1 3667888888873 123458999999
Q ss_pred CCccHHHHHHHHHHHHHHhh
Q psy14768 393 EHLMIEDSMNFLVDRIICSK 412 (452)
Q Consensus 393 tg~nv~~lf~~i~~~i~~~~ 412 (452)
++.||+++|+++.+.+....
T Consensus 327 ~~~nV~~vF~~v~~~i~~~~ 346 (353)
T 1cip_A 327 DTKNVQFVFDAVTDVIIKNN 346 (353)
T ss_dssp CHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 99999999999999987654
No 169
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.2e-16 Score=171.03 Aligned_cols=155 Identities=16% Similarity=0.216 Sum_probs=105.6
Q ss_pred CCcccEEEeeecccCCcceeeecccccccccc-------------------------------CCcceeeeEEEEEEeee
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNY-------------------------------KNTVGVDFSTKLLSHKK 286 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~-------------------------------~~t~~~d~~~~~i~~~~ 286 (452)
...++|+++|.+|+|||||+++|+........ ..+++.+.....+..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-- 242 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-- 242 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC--
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec--
Confidence 44689999999999999999999864322111 245555555444433
Q ss_pred cCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhh---HHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCC
Q psy14768 287 YGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKS---FESVVQWKHDLDSKCILDNGAMLPCLLLASKCD 363 (452)
Q Consensus 287 ~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S---~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~D 363 (452)
....+.||||||+++|...+..+++.+|++|+|||++++.. |.....+...+.... .....++|||+||+|
T Consensus 243 ---~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~---~lgi~~iIVVvNKiD 316 (611)
T 3izq_1 243 ---HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS---SLGIHNLIIAMNKMD 316 (611)
T ss_dssp ---SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHH---TTTCCEEEEEEECTT
T ss_pred ---CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHH---HcCCCeEEEEEeccc
Confidence 45678999999999999988899999999999999997531 101111111111110 112245999999999
Q ss_pred CCC-Cccc----HHHHHHHHHHcCC----CEEEEecCCCCccHHHH
Q psy14768 364 LPD-RQVE----INEIEAVCHQYNF----MSWIEVSSKEHLMIEDS 400 (452)
Q Consensus 364 l~~-~~~~----~e~~~~~~~~~~~----~~~~evSAktg~nv~~l 400 (452)
+.+ .+.. .+++..++..+++ .+|++|||++|.||.++
T Consensus 317 l~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 317 NVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred ccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 976 2222 3344555555554 46999999999999876
No 170
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.62 E-value=1.4e-15 Score=152.14 Aligned_cols=120 Identities=8% Similarity=0.135 Sum_probs=94.3
Q ss_pred eeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEE
Q psy14768 290 RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLT----------NRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359 (452)
Q Consensus 290 ~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t----------~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~ 359 (452)
+.+.+.+|||+||++|+.+|..+|++++++|+|||++ +..+|++...|+..+.... ...+.|+|||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~---~~~~~piiLvg 257 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP---CFEKTSFMLFL 257 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCG---GGSSCEEEEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcc---ccCCCeEEEEE
Confidence 6789999999999999999999999999999999998 7788988888887776541 23679999999
Q ss_pred ECCCCCC-Cc--c-------------------cHHHHHHHHHH-c--------------CCCEEEEecCCCCccHHHHHH
Q psy14768 360 SKCDLPD-RQ--V-------------------EINEIEAVCHQ-Y--------------NFMSWIEVSSKEHLMIEDSMN 402 (452)
Q Consensus 360 NK~Dl~~-~~--~-------------------~~e~~~~~~~~-~--------------~~~~~~evSAktg~nv~~lf~ 402 (452)
||+|+.+ +. + ..+++.+++.+ + ....+++|||+++.||+++|+
T Consensus 258 NK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~ 337 (354)
T 2xtz_A 258 NKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFK 337 (354)
T ss_dssp ECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHH
Confidence 9999854 11 1 24666666443 1 123358999999999999999
Q ss_pred HHHHHHHHhh
Q psy14768 403 FLVDRIICSK 412 (452)
Q Consensus 403 ~i~~~i~~~~ 412 (452)
++.+.+.+.+
T Consensus 338 ~v~~~I~~~~ 347 (354)
T 2xtz_A 338 LVDETLRRRN 347 (354)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887544
No 171
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.61 E-value=1.2e-16 Score=166.18 Aligned_cols=155 Identities=12% Similarity=0.161 Sum_probs=91.5
Q ss_pred CcccEEEeeecccCCcceeeecccc--ccc------------------------c-----ccCCcceeeeEEEEEEeeec
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQN--KFL------------------------D-----NYKNTVGVDFSTKLLSHKKY 287 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~--~~~------------------------~-----~~~~t~~~d~~~~~i~~~~~ 287 (452)
..++|+++|..++|||||+++|+.. .+. . +...+++.+.....+..
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~--- 118 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET--- 118 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC---
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec---
Confidence 3579999999999999999998742 110 0 00123333333223333
Q ss_pred CCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh---hHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCC
Q psy14768 288 GGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK---SFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCD 363 (452)
Q Consensus 288 ~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~---S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~D 363 (452)
....+.||||||++.|...+..++..+|++|||||++++. +|+....|...+... ...++| +|||+||+|
T Consensus 119 --~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~----~~~~vp~iivviNK~D 192 (467)
T 1r5b_A 119 --EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA----RTQGINHLVVVINKMD 192 (467)
T ss_dssp --SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH----HHTTCSSEEEEEECTT
T ss_pred --CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH----HHcCCCEEEEEEECcc
Confidence 3467899999999999988888999999999999999873 343222222222221 113466 999999999
Q ss_pred CCCC-------cccHHHHHHHHHHc-CC-----CEEEEecCCCCccHHHHHH
Q psy14768 364 LPDR-------QVEINEIEAVCHQY-NF-----MSWIEVSSKEHLMIEDSMN 402 (452)
Q Consensus 364 l~~~-------~~~~e~~~~~~~~~-~~-----~~~~evSAktg~nv~~lf~ 402 (452)
+.+. +...+++.+++..+ ++ .+|+++||++|.|+.++|+
T Consensus 193 l~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 193 EPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred CCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 9541 12233566677666 54 3589999999999988763
No 172
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.61 E-value=2.5e-15 Score=152.18 Aligned_cols=133 Identities=11% Similarity=0.058 Sum_probs=102.8
Q ss_pred CcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCC----------hhhHHHHHHHHHH
Q psy14768 271 NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTN----------RKSFESVVQWKHD 340 (452)
Q Consensus 271 ~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~----------~~S~~~~~~~~~~ 340 (452)
+|+|.+. ..+.+ + .+.+.||||+||++|+.+|..+|++++++|||||+++ ..+|+++..|+..
T Consensus 203 ~TiGi~~--~~~~~---~--~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~ 275 (402)
T 1azs_C 203 LTSGIFE--TKFQV---D--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKS 275 (402)
T ss_dssp CCCSEEE--EEEEE---T--TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHH
T ss_pred ceeeeEE--EEeec---C--CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHH
Confidence 4566554 33444 3 4889999999999999999999999999999999999 8899999999888
Q ss_pred HHhhhhhcCCCCCcEEEEEECCCCCC-Cc---c---------------------------cHHHHHHHHH-----Hc---
Q psy14768 341 LDSKCILDNGAMLPCLLLASKCDLPD-RQ---V---------------------------EINEIEAVCH-----QY--- 381 (452)
Q Consensus 341 i~~~~~~~~~~~~piilV~NK~Dl~~-~~---~---------------------------~~e~~~~~~~-----~~--- 381 (452)
+.... ...++|+|||+||+|+.+ +. + ..+++..|+. ..
T Consensus 276 i~~~~---~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~ 352 (402)
T 1azs_C 276 IWNNR---WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTAS 352 (402)
T ss_dssp HHTCT---TCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHhcc---cCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccc
Confidence 76641 346799999999999854 21 1 1355655532 11
Q ss_pred ----CCCEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768 382 ----NFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 382 ----~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~ 413 (452)
....+++|||+++.||+++|.++.+.+...+.
T Consensus 353 ~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~~~l 388 (402)
T 1azs_C 353 GDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHL 388 (402)
T ss_dssp CTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcccEEEEEEeecCcCHHHHHHHHHHHHHHHHH
Confidence 23346899999999999999999888876543
No 173
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.60 E-value=1.4e-15 Score=169.28 Aligned_cols=158 Identities=17% Similarity=0.180 Sum_probs=110.4
Q ss_pred CCcccEEEeeecccCCcceeeeccccc-------ccc---------ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNK-------FLD---------NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~-------~~~---------~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG 301 (452)
...++|+++|.+++|||||+++|++.. +.. +...+++.+.. .+.+ +.....+.||||||
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva--~v~f---~~~~~kI~IIDTPG 368 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTS--HVEY---DTPTRHYAHVDCPG 368 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCS--CEEE---ECSSCEEEEEECCC
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEE--EEEE---cCCCEEEEEEECCC
Confidence 345899999999999999999998631 000 01122222222 2222 44557789999999
Q ss_pred cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCC-Cc---ccHHHHHH
Q psy14768 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPD-RQ---VEINEIEA 376 (452)
Q Consensus 302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~-~~---~~~e~~~~ 376 (452)
+++|...+..++..+|++|||||++++...+..+.| ..+... ++| +|||+||+|+.+ .+ ...+++.+
T Consensus 369 HedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL-~ll~~l-------gIP~IIVVINKiDLv~d~e~le~i~eEi~e 440 (1289)
T 3avx_A 369 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI-LLGRQV-------GVPYIIVFLNKCDMVDDEELLELVEMEVRE 440 (1289)
T ss_dssp HHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHH-HHHHHH-------TCSCEEEEEECCTTCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHH-HHHHHc-------CCCeEEEEEeecccccchhhHHHHHHHHHH
Confidence 999998888899999999999999998665554433 333332 377 899999999975 11 22356777
Q ss_pred HHHHcCC----CEEEEecCCCC--------ccHHHHHHHHHHHH
Q psy14768 377 VCHQYNF----MSWIEVSSKEH--------LMIEDSMNFLVDRI 408 (452)
Q Consensus 377 ~~~~~~~----~~~~evSAktg--------~nv~~lf~~i~~~i 408 (452)
++..+++ .+++++||++| .+|.++|+.+...+
T Consensus 441 lLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 441 LLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp HHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 8887764 45999999999 56888888776544
No 174
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.60 E-value=1.6e-15 Score=152.34 Aligned_cols=135 Identities=10% Similarity=0.073 Sum_probs=98.1
Q ss_pred cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCC----------hhhHHHHHHHH
Q psy14768 269 YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTN----------RKSFESVVQWK 338 (452)
Q Consensus 269 ~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~----------~~S~~~~~~~~ 338 (452)
..+|+|.+. ..+.+ +.+.+.+|||+||+.++.+|..+|++++++|+|||+++ ..++++...|+
T Consensus 185 r~~T~Gi~~--~~~~~-----~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~ 257 (362)
T 1zcb_A 185 RRPTKGIHE--YDFEI-----KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIF 257 (362)
T ss_dssp CCCCSSEEE--EEEEE-----TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHH
T ss_pred cCCccceEE--EEeee-----CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHH
Confidence 345667554 33444 35889999999999999999999999999999999999 67888888887
Q ss_pred HHHHhhhhhcCCCCCcEEEEEECCCCCC-C----------------cccHHHHHHHHHH----------cCCCEEEEecC
Q psy14768 339 HDLDSKCILDNGAMLPCLLLASKCDLPD-R----------------QVEINEIEAVCHQ----------YNFMSWIEVSS 391 (452)
Q Consensus 339 ~~i~~~~~~~~~~~~piilV~NK~Dl~~-~----------------~~~~e~~~~~~~~----------~~~~~~~evSA 391 (452)
..+.... ...+.|+|||+||+|+.+ + .+..+++.+++.. .....+++|||
T Consensus 258 ~~i~~~~---~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA 334 (362)
T 1zcb_A 258 ETIVNNR---VFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTA 334 (362)
T ss_dssp HHHHTCG---GGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCT
T ss_pred HHHhcch---hhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEec
Confidence 7776541 346799999999999853 1 2667777777621 11234799999
Q ss_pred CCCccHHHHHHHHHHHHHHhhh
Q psy14768 392 KEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 392 ktg~nv~~lf~~i~~~i~~~~~ 413 (452)
+++.||+++|.++.+.+...+-
T Consensus 335 ~d~~nV~~vF~~v~~~i~~~~l 356 (362)
T 1zcb_A 335 INTENIRLVFRDVKDTILHDNL 356 (362)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876543
No 175
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.58 E-value=2.1e-15 Score=149.58 Aligned_cols=132 Identities=14% Similarity=0.113 Sum_probs=102.4
Q ss_pred cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCC----------ChhhHHHHHHHH
Q psy14768 269 YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLT----------NRKSFESVVQWK 338 (452)
Q Consensus 269 ~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t----------~~~S~~~~~~~~ 338 (452)
..+|+|.... .+.+ +.+.+++|||+||++|+.+|..+|++++++|+|||++ +..++++...|+
T Consensus 145 ~~~TiGi~~~--~~~~-----~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~ 217 (340)
T 4fid_A 145 RTKTTGIHEY--DFVV-----KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVF 217 (340)
T ss_dssp CCCCCSCEEE--EEES-----SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHH
T ss_pred ccceeeeEEE--EEEe-----eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHH
Confidence 6677885443 3333 4588999999999999999999999999999999999 667788777777
Q ss_pred HHHHhhhhhcCCCCCcEEEEEECCCCCC----------------CcccHHHHHHHHHH-c--------------------
Q psy14768 339 HDLDSKCILDNGAMLPCLLLASKCDLPD----------------RQVEINEIEAVCHQ-Y-------------------- 381 (452)
Q Consensus 339 ~~i~~~~~~~~~~~~piilV~NK~Dl~~----------------~~~~~e~~~~~~~~-~-------------------- 381 (452)
..+... ....++|++||+||+|+.+ .....+++.+++.. +
T Consensus 218 ~~i~~~---~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~ 294 (340)
T 4fid_A 218 KDIMTN---EFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANI 294 (340)
T ss_dssp HHHHHC---GGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC---------
T ss_pred HHHhhh---hccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhcccccccccc
Confidence 766543 1346799999999999853 01245566555433 3
Q ss_pred -----CCCEEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768 382 -----NFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 382 -----~~~~~~evSAktg~nv~~lf~~i~~~i~~ 410 (452)
....+++|||+++.||+.+|..+.+.|+.
T Consensus 295 ~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 295 EGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp -----CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 12457999999999999999999999987
No 176
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.58 E-value=8.6e-17 Score=171.57 Aligned_cols=147 Identities=14% Similarity=0.149 Sum_probs=81.7
Q ss_pred CcccEEEeeecccCCcceeeeccccc-------------------------------cccccCCcceeeeEEEEEEeeec
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNK-------------------------------FLDNYKNTVGVDFSTKLLSHKKY 287 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~-------------------------------~~~~~~~t~~~d~~~~~i~~~~~ 287 (452)
..++|+++|.+|+|||||+++|+... +.....++++.+.....+..
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~--- 252 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES--- 252 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe---
Confidence 45789999999999999999996421 11112345555555444433
Q ss_pred CCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh-------hHHHHHHHHHHHHhhhhhcCCCCCc-EEEEE
Q psy14768 288 GGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK-------SFESVVQWKHDLDSKCILDNGAMLP-CLLLA 359 (452)
Q Consensus 288 ~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~-------S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~ 359 (452)
....+.||||||++.|...+..++..+|++|||+|++++. .-+..+.+. .+... ++| +|||+
T Consensus 253 --~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~-~~~~l-------gip~iIvvi 322 (592)
T 3mca_A 253 --DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAY-LLRAL-------GISEIVVSV 322 (592)
T ss_dssp --------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHH-HHHHS-------SCCCEEEEE
T ss_pred --CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHH-HHHHc-------CCCeEEEEE
Confidence 4567899999999999988888899999999999999753 112222222 22221 255 99999
Q ss_pred ECCCCCC-Ccc----cHHHHHHHH-HHcCCC----EEEEecCCCCccHH
Q psy14768 360 SKCDLPD-RQV----EINEIEAVC-HQYNFM----SWIEVSSKEHLMIE 398 (452)
Q Consensus 360 NK~Dl~~-~~~----~~e~~~~~~-~~~~~~----~~~evSAktg~nv~ 398 (452)
||+|+.+ ... ..+++..++ ..+++. +|+++||++|.||.
T Consensus 323 NKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 323 NKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred eccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 9999975 211 123344444 445652 58999999999998
No 177
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.57 E-value=6.2e-15 Score=159.41 Aligned_cols=113 Identities=14% Similarity=0.184 Sum_probs=82.8
Q ss_pred cccEEEeeecccCCcceeeeccccccccccC------------------CcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYK------------------NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~------------------~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG 301 (452)
..+|+++|+.|+|||||++++++........ .+++.......+ ....+.++||||+|
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~-----~~~~~~~nliDTpG 83 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL-----LFRGHRVFLLDAPG 83 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEE-----EETTEEEEEEECCC
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEE-----eeCCEEEEEEeCCC
Confidence 4689999999999999999998432211110 122333333333 23467899999999
Q ss_pred cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365 (452)
Q Consensus 302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~ 365 (452)
++.|...+..+++.+|++++|+|++++...+....|...... ++|+++|+||+|+.
T Consensus 84 ~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~--------~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 84 YGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL--------GLPRMVVVTKLDKG 139 (665)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT--------TCCEEEEEECGGGC
T ss_pred ccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHc--------cCCEEEEecCCchh
Confidence 999998889999999999999999988776665444433332 48999999999986
No 178
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.54 E-value=1.9e-15 Score=151.88 Aligned_cols=157 Identities=18% Similarity=0.243 Sum_probs=103.8
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEE----------------------------------------
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK---------------------------------------- 280 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~---------------------------------------- 280 (452)
..|+++|++|+|||||+|++++..+......+++......
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 5899999999999999999999776443333222111000
Q ss_pred ------------EEEeeecCCeeEEEEEEecCCcchh-------------hhhhhhhhcCCCEEEEEEeCCChhhHHHHH
Q psy14768 281 ------------LLSHKKYGGRPVKLQIWDIAGQDRY-------------ICMSRVYYQNSDGCIIMFDLTNRKSFESVV 335 (452)
Q Consensus 281 ------------~i~~~~~~~~~~~l~l~DtaG~e~~-------------~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~ 335 (452)
.+.+ .......+.||||||+.++ ..+...+++++|++|+|+|..+..... .
T Consensus 115 ~g~~~~~s~~~i~l~i--~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 115 TGRSKAISSVPIHLSI--YSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp SCTTCCCCCSCEEEEE--EETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred cCCCCCcccceEEEEE--eCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 0000 0112335889999998776 455577899999999999876543221 2
Q ss_pred HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHH
Q psy14768 336 QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVD 406 (452)
Q Consensus 336 ~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~ 406 (452)
.|+..+... ...+.|+|+|+||+|+.+ .....+.++.+...++.. |+++|+.++.++++.+..+..
T Consensus 191 ~~~~l~~~~----~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~v~~~s~~~i~~~~~~~~~ 257 (360)
T 3t34_A 191 DAIKISREV----DPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYP-WVGVVNRSQADINKNVDMIAA 257 (360)
T ss_dssp HHHHHHHHS----CTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSC-CEEECCCCHHHHHTTCCHHHH
T ss_pred HHHHHHHHh----cccCCCEEEEEeCCccCCCcccHHHHHcCccccccCC-eEEEEECChHHhccCCCHHHH
Confidence 344444443 345689999999999986 444444444444445554 999999999999877655433
No 179
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.52 E-value=3.4e-14 Score=149.48 Aligned_cols=114 Identities=12% Similarity=0.084 Sum_probs=79.0
Q ss_pred cccEEEeeecccCCcceeeecccccccccc----------------------CCcceeeeEEEEEEeeecCCeeEEEEEE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNY----------------------KNTVGVDFSTKLLSHKKYGGRPVKLQIW 297 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~----------------------~~t~~~d~~~~~i~~~~~~~~~~~l~l~ 297 (452)
..+|+++|.+|+|||||+++|+........ ..+++.+.....+ ....+.+.||
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~-----~~~~~~i~li 87 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQF-----PYHDCLVNLL 87 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEE-----EETTEEEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEE-----EECCeEEEEE
Confidence 478999999999999999999853111000 0111111112222 2345789999
Q ss_pred ecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366 (452)
Q Consensus 298 DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~ 366 (452)
||||++.|...+..+++.+|++|+|+|++++...+....|.. +. ..++|+++|+||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~-~~-------~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 88 DTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEV-TR-------LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HT-------TTTCCEEEEEECTTSCC
T ss_pred ECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHH-HH-------HcCCCEEEEEcCcCCcc
Confidence 999999999888889999999999999998765444333322 22 23589999999999864
No 180
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.52 E-value=7.8e-14 Score=142.25 Aligned_cols=164 Identities=10% Similarity=0.057 Sum_probs=112.4
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch----hhhhhhh---hh
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR----YICMSRV---YY 313 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~----~~~~~~~---~i 313 (452)
..|+++|.+|+|||||++++++........+.++.+...-.+.+ ++ ...+.+||++|... +..+... .+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~---~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~ 233 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEV---SE-EERFTLADIPGIIEGASEGKGLGLEFLRHI 233 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEEC---SS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEe---cC-cceEEEEeccccccchhhhhhhhHHHHHHH
Confidence 57899999999999999999975432222233333332223333 32 35688999999742 2222222 35
Q ss_pred cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCC
Q psy14768 314 QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKE 393 (452)
Q Consensus 314 ~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAkt 393 (452)
+.++.+|+|+|++ ...+.++..|..++..+.. .....|.+||+||+|+... ...+++.++....+.. ++++||++
T Consensus 234 era~~lL~vvDls-~~~~~~ls~g~~el~~la~--aL~~~P~ILVlNKlDl~~~-~~~~~l~~~l~~~g~~-vi~iSA~~ 308 (416)
T 1udx_A 234 ARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDP--ALLRRPSLVALNKVDLLEE-EAVKALADALAREGLA-VLPVSALT 308 (416)
T ss_dssp TSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCH--HHHHSCEEEEEECCTTSCH-HHHHHHHHHHHTTTSC-EEECCTTT
T ss_pred HHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhH--HhhcCCEEEEEECCChhhH-HHHHHHHHHHHhcCCe-EEEEECCC
Confidence 6799999999998 6667777777776655410 0124899999999998753 2334444555555655 89999999
Q ss_pred CccHHHHHHHHHHHHHHhhh
Q psy14768 394 HLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 394 g~nv~~lf~~i~~~i~~~~~ 413 (452)
+.+++++|+++.+.+.+...
T Consensus 309 g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 309 GAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp CTTHHHHHHHHHHHHHTSCC
T ss_pred ccCHHHHHHHHHHHHHhccc
Confidence 99999999999999876543
No 181
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.52 E-value=3.2e-14 Score=154.42 Aligned_cols=115 Identities=17% Similarity=0.191 Sum_probs=84.7
Q ss_pred CcccEEEeeecccCCcceeeecccccccc------cc------------CCcceeeeEEEEEEeeecCCeeEEEEEEecC
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLD------NY------------KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~------~~------------~~t~~~d~~~~~i~~~~~~~~~~~l~l~Dta 300 (452)
...+|+|+|.+|+|||||+++|+...... .. ..+++.......+.+ ..+.+.||||+
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-----~~~~i~liDTP 85 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-----KDHRINIIDTP 85 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-----TTEEEEEECCC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-----CCeEEEEEECc
Confidence 45789999999999999999998421100 00 112222222223333 35789999999
Q ss_pred CcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366 (452)
Q Consensus 301 G~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~ 366 (452)
|+..|...+..+++.+|++|+|+|++++.+++....|...... ++|+++|+||+|+..
T Consensus 86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~--------~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY--------KVPRIAFANKMDKTG 143 (691)
T ss_dssp SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT--------TCCEEEEEECTTSTT
T ss_pred CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHc--------CCCEEEEEECCCccc
Confidence 9999998889999999999999999999999888777754443 489999999999864
No 182
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.51 E-value=1.3e-14 Score=157.65 Aligned_cols=165 Identities=12% Similarity=0.169 Sum_probs=110.5
Q ss_pred CcccEEEeeecccCCcceeeecccccc-ccccCCcce--------------eee--------------------------
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVG--------------VDF-------------------------- 277 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~--------------~d~-------------------------- 277 (452)
..++|+|+|.+|+|||||+|+|++..+ .....+++. .++
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 468999999999999999999998664 344455551 111
Q ss_pred -------------EEEEEEeeecCCee--EEEEEEecCCcchh---hhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHH
Q psy14768 278 -------------STKLLSHKKYGGRP--VKLQIWDIAGQDRY---ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKH 339 (452)
Q Consensus 278 -------------~~~~i~~~~~~~~~--~~l~l~DtaG~e~~---~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~ 339 (452)
....+.+ .... ..+.||||||.... ......+++++|++|+|+|++++.++.+...|..
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~---p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~ 224 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEY---PLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLEN 224 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEE---CCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHH
T ss_pred HHhhccccccccceEEEEEc---cchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHH
Confidence 0000000 0000 35889999997653 3445678999999999999999988888877765
Q ss_pred HHHhhhhhcCCCCCcEEEEEECCCCCC-CcccH---H-------HHHH-----HHHHcC-------CCEEEEecCC----
Q psy14768 340 DLDSKCILDNGAMLPCLLLASKCDLPD-RQVEI---N-------EIEA-----VCHQYN-------FMSWIEVSSK---- 392 (452)
Q Consensus 340 ~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~---e-------~~~~-----~~~~~~-------~~~~~evSAk---- 392 (452)
.+.. .+.|+++|+||+|+.. ..... + .+.. +....+ ...+++|||+
T Consensus 225 ~l~~-------~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~ 297 (695)
T 2j69_A 225 YIKG-------RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALR 297 (695)
T ss_dssp HTTT-------SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHH
T ss_pred HHHh-------hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHH
Confidence 4432 2478999999999864 21111 0 1111 111111 1248999999
Q ss_pred ----------CCccHHHHHHHHHHHHHHhhh
Q psy14768 393 ----------EHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 393 ----------tg~nv~~lf~~i~~~i~~~~~ 413 (452)
++.|+++++..+.+.+...+.
T Consensus 298 ~~~~~~~~~~~~~Gi~~L~~~L~~~l~~~~~ 328 (695)
T 2j69_A 298 RRLKNPQADLDGTGFPKFMDSLNTFLTRERA 328 (695)
T ss_dssp HHHHCTTCCCTTSSHHHHHHHHHHHHHHTHH
T ss_pred hhccCchhhhhccCHHHHHHHHHHHHHHhHH
Confidence 999999999999887765443
No 183
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.51 E-value=3.2e-14 Score=136.53 Aligned_cols=121 Identities=14% Similarity=0.126 Sum_probs=84.4
Q ss_pred CCcccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhc--
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQ-- 314 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~-- 314 (452)
...++|+++|.+|+|||||+|+++++.+ .....++++.+.....+.. + ...+.||||||++.|......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~---~--~~~l~liDTpG~~~~~~~~~~~~~~i 108 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM---G--GFTINIIDTPGLVEAGYVNHQALELI 108 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE---T--TEEEEEEECCCSEETTEECHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEE---C--CeeEEEEECCCCCCcccchHHHHHHH
Confidence 3568999999999999999999998664 2333344444555555544 3 457899999999887655444433
Q ss_pred -------CCCEEEEEEeCCChhhHHHH-HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768 315 -------NSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366 (452)
Q Consensus 315 -------~ad~vIlV~D~t~~~S~~~~-~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~ 366 (452)
.+|++|+|+|++... +... ..|+..+...+. .....|+++|+||+|+..
T Consensus 109 ~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~--~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 109 KGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFG--KEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp HHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHC--GGGGGGEEEEEECTTCCC
T ss_pred HHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhc--hhhhcCEEEEEeCcccCC
Confidence 789999999998754 4333 456666665421 111259999999999964
No 184
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.50 E-value=2.6e-14 Score=140.34 Aligned_cols=111 Identities=16% Similarity=0.199 Sum_probs=68.5
Q ss_pred EEEEEEecCCcch-------------hhhhhhhhhcCCCEEEEEEeCCC-hhhHHHHHHHHHHHHhhhhhcCCCCCcEEE
Q psy14768 292 VKLQIWDIAGQDR-------------YICMSRVYYQNSDGCIIMFDLTN-RKSFESVVQWKHDLDSKCILDNGAMLPCLL 357 (452)
Q Consensus 292 ~~l~l~DtaG~e~-------------~~~~~~~~i~~ad~vIlV~D~t~-~~S~~~~~~~~~~i~~~~~~~~~~~~piil 357 (452)
..+.||||||+.. +..+...+++.+|++|+|+|+++ ....++...+...+. ..++|+++
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~-------~~~~~~i~ 203 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD-------PEGKRTIG 203 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC-------SSCSSEEE
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC-------CCCCcEEE
Confidence 4689999999753 34555678999999999999743 322122112222222 24589999
Q ss_pred EEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCC------CccHHHHHHHHHHHHHH
Q psy14768 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKE------HLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 358 V~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAkt------g~nv~~lf~~i~~~i~~ 410 (452)
|+||+|+.+ .....+.+......++ ..|+.+|+.+ +.|+.++++.+...+..
T Consensus 204 v~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 204 VITKLDLMDKGTDAMEVLTGRVIPLT-LGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp EEECTTSSCSSCCCHHHHTTSSSCCT-TCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred EEcCcccCCcchHHHHHHhCCCccCC-CCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 999999976 2222222221111111 2367776665 57788888887776654
No 185
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.49 E-value=1.3e-14 Score=147.54 Aligned_cols=157 Identities=14% Similarity=0.135 Sum_probs=87.2
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEee------------------ecCC-eeEEEEEEecCC
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK------------------KYGG-RPVKLQIWDIAG 301 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~------------------~~~~-~~~~l~l~DtaG 301 (452)
++|+++|.||||||||+|++++........+.++.+.......+. .+++ ..+.+.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 479999999999999999999876544444444433222211100 0022 247899999999
Q ss_pred cchh----hhhhh---hhhcCCCEEEEEEeCCCh-----------hhHHHHHHHHHHHHhh-------------------
Q psy14768 302 QDRY----ICMSR---VYYQNSDGCIIMFDLTNR-----------KSFESVVQWKHDLDSK------------------- 344 (452)
Q Consensus 302 ~e~~----~~~~~---~~i~~ad~vIlV~D~t~~-----------~S~~~~~~~~~~i~~~------------------- 344 (452)
+... ..+.. .+++.+|++++|+|+++. ..+.+++.+..++...
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~~~ 160 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQ 160 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTTSS
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Confidence 8642 22333 347899999999999886 3455544333333211
Q ss_pred -------------------------h---------------------hhcCCCCCcEEEEEECCCCCCCcccHHHHHHHH
Q psy14768 345 -------------------------C---------------------ILDNGAMLPCLLLASKCDLPDRQVEINEIEAVC 378 (452)
Q Consensus 345 -------------------------~---------------------~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~ 378 (452)
. .......+|+++|+||+|+.. .+....+.
T Consensus 161 ~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~~----~~~l~~l~ 236 (397)
T 1wxq_A 161 KIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAAS----DEQIKRLV 236 (397)
T ss_dssp CCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGSC----HHHHHHHH
T ss_pred CccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhccCCCEEEEEeCccccc----hHHHHHHH
Confidence 0 000002389999999999862 23334443
Q ss_pred HHc---CCCEEEEecCCCCccHHHHHH
Q psy14768 379 HQY---NFMSWIEVSSKEHLMIEDSMN 402 (452)
Q Consensus 379 ~~~---~~~~~~evSAktg~nv~~lf~ 402 (452)
+.+ + ..++.+||+.+.++.++++
T Consensus 237 ~~~~~~~-~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 237 REEEKRG-YIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HHHHHTT-CEEEEECHHHHHHHHSCSS
T ss_pred HHHhhcC-CcEEEEeccchhhHHHHHh
Confidence 333 4 3589999999999987654
No 186
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.49 E-value=1.3e-14 Score=142.25 Aligned_cols=158 Identities=13% Similarity=0.218 Sum_probs=86.3
Q ss_pred cccEEEeeecccCCcceeeecccc-ccccccC--------CcceeeeEEEEEEeeecCCeeEEEEEEecCCc-------c
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQN-KFLDNYK--------NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ-------D 303 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~-~~~~~~~--------~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~-------e 303 (452)
.++|+++|++|+|||||++++.+. .+..... ++...+.....+.. ++....+.+|||+|+ +
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~---~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEE---RGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC------CCEEEEEEEEC----------
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecC---CCcccCcchhhhhhhhhhcCcHH
Confidence 478899999999999999998764 4433321 22222222222222 445678999999998 5
Q ss_pred hhhhhhh-------hhhcC-------------CCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCC
Q psy14768 304 RYICMSR-------VYYQN-------------SDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCD 363 (452)
Q Consensus 304 ~~~~~~~-------~~i~~-------------ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~D 363 (452)
.+..+.. .+++. +++++++.+.+. .+++.+.. ..+... ....++++|+||+|
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l-----~~~~~iilV~~K~D 166 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAI-----HNKVNIVPVIAKAD 166 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHH-----TTTSCEEEEECCGG
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHH-----HhcCCEEEEEEeCC
Confidence 5554443 33332 344555544432 23333331 223332 13479999999999
Q ss_pred CCC-Cc--ccHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768 364 LPD-RQ--VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 364 l~~-~~--~~~e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i~~ 410 (452)
+.. ++ ...+++.+++...++. |+++||+++ |++++|.++++.+..
T Consensus 167 l~~~~e~~~~~~~~~~~~~~~~~~-~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 167 TLTLKERERLKKRILDEIEEHNIK-IYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTTCC-CCCCC----------CHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCe-EEecCCccc-cccHHHHHHHHHhhc
Confidence 976 22 3356788889999876 999999999 999999999988864
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.48 E-value=1.7e-13 Score=148.95 Aligned_cols=120 Identities=13% Similarity=0.160 Sum_probs=85.5
Q ss_pred CcccEEEeeecccCCcceeeeccccc--cc-----------ccc-----CCcceeeeEEEEEEeee--cCCeeEEEEEEe
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNK--FL-----------DNY-----KNTVGVDFSTKLLSHKK--YGGRPVKLQIWD 298 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~--~~-----------~~~-----~~t~~~d~~~~~i~~~~--~~~~~~~l~l~D 298 (452)
...+|+|+|..++|||||+++|+... +. .++ ..+++.......+.+.. .++..+.+.|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 34789999999999999999997421 11 000 11222222222333210 123448899999
Q ss_pred cCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366 (452)
Q Consensus 299 taG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~ 366 (452)
|+|+..|...+..+++.+|++|+|+|++++...+....|...... ++|+++|+||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~--------~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 89 TPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY--------KVPRIAFVNKMDRMG 148 (704)
T ss_pred CCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc--------CCCEEEEEeCCCccc
Confidence 999999998889999999999999999999887777666544332 489999999999854
No 188
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.48 E-value=9.5e-14 Score=150.74 Aligned_cols=114 Identities=14% Similarity=0.218 Sum_probs=83.9
Q ss_pred cccEEEeeecccCCcceeeecccc--ccc-----------ccc-----CCcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQN--KFL-----------DNY-----KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~--~~~-----------~~~-----~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG 301 (452)
..+|+|+|.+|+|||||+++|+.. .+. .++ ..+++.......+.+ ..+.+.||||+|
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-----~~~~i~liDTPG 84 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-----EGHRVNIIDTPG 84 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-----TTEEEEEECCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-----CCeeEEEEECcC
Confidence 478999999999999999999852 110 000 112222222223333 357899999999
Q ss_pred cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366 (452)
Q Consensus 302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~ 366 (452)
+..|...+..+++.+|++|+|+|++++.+++....|...... ++|+++|+||+|+..
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~--------~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTY--------GVPRIVFVNKMDKLG 141 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHT--------TCCEEEEEECTTSTT
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHc--------CCCEEEEEECCCccc
Confidence 999988888999999999999999999998888777654333 489999999999864
No 189
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.46 E-value=8.6e-15 Score=146.76 Aligned_cols=159 Identities=15% Similarity=0.134 Sum_probs=95.6
Q ss_pred CcccEEEeeecccCCcceeeeccccccc------cccCCcc----------------------eee--------------
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFL------DNYKNTV----------------------GVD-------------- 276 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~------~~~~~t~----------------------~~d-------------- 276 (452)
...+|+++|.+|+|||||+|+|++..+. .+..|+. +.+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3479999999999999999999997763 2222331 100
Q ss_pred -------eEEEEEEeeecCCeeEEEEEEecCCcc-------------hhhhhhhhhhcCCCEE-EEEEeCCChhhHHHHH
Q psy14768 277 -------FSTKLLSHKKYGGRPVKLQIWDIAGQD-------------RYICMSRVYYQNSDGC-IIMFDLTNRKSFESVV 335 (452)
Q Consensus 277 -------~~~~~i~~~~~~~~~~~l~l~DtaG~e-------------~~~~~~~~~i~~ad~v-IlV~D~t~~~S~~~~~ 335 (452)
.....+.+. ......+.||||||.. .+..+...|+..++.+ ++|.|++....-++..
T Consensus 110 g~~~gi~~~~~~~~i~--~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~ 187 (353)
T 2x2e_A 110 GTNKGISPVPINLRVY--SPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 187 (353)
T ss_dssp TTTTCCCCCCEEEEEE--ETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH
T ss_pred ccCCCcccCceEEEEe--cCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH
Confidence 000001110 1123568999999963 3445666777666654 4566766543333322
Q ss_pred HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHH--HHHHcCCCEEEEecCCCCccHHHHHHHHHH
Q psy14768 336 QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEA--VCHQYNFMSWIEVSSKEHLMIEDSMNFLVD 406 (452)
Q Consensus 336 ~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~--~~~~~~~~~~~evSAktg~nv~~lf~~i~~ 406 (452)
.+ +... ...+.|+++|+||+|+.+ .....+..+. +....++..++++||+++.|++++|+++..
T Consensus 188 ~i---~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 188 KV---AKEV----DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HH---HHHH----CTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HH---HHHh----CcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 23 3332 234689999999999976 2211222111 001123344688999999999999998876
No 190
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.44 E-value=1.9e-13 Score=131.63 Aligned_cols=120 Identities=14% Similarity=0.133 Sum_probs=80.7
Q ss_pred CcccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhh-------
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSR------- 310 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~------- 310 (452)
..++|+++|.+|+|||||+|+|++..+. ....++++.+.....+.. ..+.+.||||||++.+..+..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~l~iiDTpG~~~~~~~~~~~~~~i~ 112 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR-----AGFTLNIIDTPGLIEGGYINDMALNIIK 112 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEE-----TTEEEEEEECCCSEETTEECHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEee-----CCeEEEEEECCCCCCCccchHHHHHHHH
Confidence 4689999999999999999999986642 233333443443333333 456799999999977653222
Q ss_pred hh--hcCCCEEEEEEeCCChhhHHHH-HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768 311 VY--YQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366 (452)
Q Consensus 311 ~~--i~~ad~vIlV~D~t~~~S~~~~-~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~ 366 (452)
.+ ...+|++|+|||++.. ++... ..|+..+...+. ....+|+++|+||+|+..
T Consensus 113 ~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~--~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 113 SFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFG--KGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp HHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHC--GGGGGGEEEEEECCSCCC
T ss_pred HHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhC--cccccCEEEEEECcccCC
Confidence 11 3479999999998763 34333 356666655421 011269999999999975
No 191
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.43 E-value=4.8e-14 Score=143.91 Aligned_cols=156 Identities=17% Similarity=0.282 Sum_probs=81.5
Q ss_pred cccEEEeeecccCCcceeeeccccccc-ccc-------CCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh-----
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFL-DNY-------KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI----- 306 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~-------~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~----- 306 (452)
.++|+++|++|+|||||+|.+++..+. ... .++++.+.....+.. .+....+.+|||+|+..+.
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~---~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE---GGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC---------CEEEEEEECC-----------
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEec---CCcccceeeeechhhhhhccchhh
Confidence 477899999999999999999986552 211 223332222222222 3444578999999976531
Q ss_pred --hh------------------hhhhhcCCCEEEEEEeCCCh-hhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCC
Q psy14768 307 --CM------------------SRVYYQNSDGCIIMFDLTNR-KSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDL 364 (452)
Q Consensus 307 --~~------------------~~~~i~~ad~vIlV~D~t~~-~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl 364 (452)
.+ ...++.++++.+++|+.... .++.... .|+..+.. ++++|+|+||+|+
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~--------~v~iIlVinK~Dl 179 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE--------KVNIIPLIAKADT 179 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT--------TSEEEEEEESTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc--------cCcEEEEEEcccC
Confidence 11 12234556655555555443 3444443 45555543 4899999999999
Q ss_pred CC-CcccH--HHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHH
Q psy14768 365 PD-RQVEI--NEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 365 ~~-~~~~~--e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~ 407 (452)
.. +++.. +.+.+++...++. ++++||+++.++.++|..+...
T Consensus 180 l~~~ev~~~k~~i~~~~~~~~i~-~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 180 LTPEECQQFKKQIMKEIQEHKIK-IYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCC-CCCCC-----------------
T ss_pred ccHHHHHHHHHHHHHHHHHcCCe-EEeCCCCCCcCHHHHHHHHHhh
Confidence 76 33333 6677788888877 8999999999999988777653
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.43 E-value=7.4e-14 Score=129.71 Aligned_cols=156 Identities=16% Similarity=0.123 Sum_probs=96.2
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeee--------------EEEEEEee---ec----------CCeeE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF--------------STKLLSHK---KY----------GGRPV 292 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~--------------~~~~i~~~---~~----------~~~~~ 292 (452)
..+|+++|.+|+|||||+++|+...........+..++ ....+... .+ ....+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 46899999999999999999986421111111111111 00111110 00 01235
Q ss_pred EEEEEecCCcchhhhhhhhh-hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cccc
Q psy14768 293 KLQIWDIAGQDRYICMSRVY-YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVE 370 (452)
Q Consensus 293 ~l~l~DtaG~e~~~~~~~~~-i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~ 370 (452)
.+.+|||+|+-. .+.+ ...++.+|+|+|+++.... ...+... . ..|++||+||+|+.+ ....
T Consensus 110 d~iiidt~G~~~----~~~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~--~--------~~~~iiv~NK~Dl~~~~~~~ 173 (221)
T 2wsm_A 110 DLLLIENVGNLI----CPVDFDLGENYRVVMVSVTEGDDV--VEKHPEI--F--------RVADLIVINKVALAEAVGAD 173 (221)
T ss_dssp SEEEEEEEEBSS----GGGGCCCSCSEEEEEEEGGGCTTH--HHHCHHH--H--------HTCSEEEEECGGGHHHHTCC
T ss_pred CEEEEeCCCCCC----CCchhccccCcEEEEEeCCCcchh--hhhhhhh--h--------hcCCEEEEecccCCcchhhH
Confidence 788999999611 1111 1357899999999876421 1111111 1 278999999999864 2345
Q ss_pred HHHHHHHHHHcC-CCEEEEecCCCCccHHHHHHHHHHHHHHh
Q psy14768 371 INEIEAVCHQYN-FMSWIEVSSKEHLMIEDSMNFLVDRIICS 411 (452)
Q Consensus 371 ~e~~~~~~~~~~-~~~~~evSAktg~nv~~lf~~i~~~i~~~ 411 (452)
.+++.+++..++ ..+++++||++|.|++++|+++.+.+...
T Consensus 174 ~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 174 VEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 666666666654 34689999999999999999999877544
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.36 E-value=2.7e-12 Score=128.31 Aligned_cols=150 Identities=11% Similarity=0.116 Sum_probs=95.6
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCe---------------eEEEEEEecCCcch
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR---------------PVKLQIWDIAGQDR 304 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~---------------~~~l~l~DtaG~e~ 304 (452)
.++|+++|.||||||||+|++++..+.....+.++.+.....+.+ .+. ...+.||||||+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~---~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPM---PDPRLDALAEIVKPERILPTTMEFVDIAGLVA 78 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEEC---CCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEec---CCcccceeeeeecccceeeeEEEEEECCCCcc
Confidence 368999999999999999999986654444443333322222333 332 25789999999987
Q ss_pred hh----hhh---hhhhcCCCEEEEEEeCCCh----------hhHHHHHHHHHHHH-------------------------
Q psy14768 305 YI----CMS---RVYYQNSDGCIIMFDLTNR----------KSFESVVQWKHDLD------------------------- 342 (452)
Q Consensus 305 ~~----~~~---~~~i~~ad~vIlV~D~t~~----------~S~~~~~~~~~~i~------------------------- 342 (452)
+. .+. ..+++++|++++|+|+++. ..++++..+..++.
T Consensus 79 ~a~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~ 158 (363)
T 1jal_A 79 GASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEA 158 (363)
T ss_dssp THHHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred cccccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhH
Confidence 53 232 2358999999999999862 34555544333331
Q ss_pred -----------hhh--------------------hhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEec
Q psy14768 343 -----------SKC--------------------ILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVS 390 (452)
Q Consensus 343 -----------~~~--------------------~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evS 390 (452)
... .......+|+++|+||.|..- .....+.+++++...+.. ++.+|
T Consensus 159 ~~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~-~i~~s 237 (363)
T 1jal_A 159 KFELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAV-VVPVC 237 (363)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCE-EEEEC
T ss_pred HHHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCC-EEEec
Confidence 000 011224599999999998642 234566777888777765 89999
Q ss_pred CCC
Q psy14768 391 SKE 393 (452)
Q Consensus 391 Akt 393 (452)
|+.
T Consensus 238 A~~ 240 (363)
T 1jal_A 238 AAI 240 (363)
T ss_dssp HHH
T ss_pred hHH
Confidence 764
No 194
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.34 E-value=1.4e-14 Score=135.09 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=93.0
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeE------------EEEEEeeecCCee---------------
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS------------TKLLSHKKYGGRP--------------- 291 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~------------~~~i~~~~~~~~~--------------- 291 (452)
..++|+++|.+|||||||+++|+...+...+.++++.++. ...+.+. .+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~l 114 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLN--TGKECHLDAHLVGHALEDL 114 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEE--CTTCSSCCHHHHHHHHTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEec--CCceEeccHHHHHHHHHHH
Confidence 3578999999999999999999976554444555555443 1222220 0111
Q ss_pred ----EEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-
Q psy14768 292 ----VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD- 366 (452)
Q Consensus 292 ----~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~- 366 (452)
..+.++|++|.-.. ...+-...+.++.++|+.+...... ..... . ..|++||+||+|+.+
T Consensus 115 ~~~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~---~-------~~~~iiv~NK~Dl~~~ 179 (226)
T 2hf9_A 115 NLDEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KHPGI---M-------KTADLIVINKIDLADA 179 (226)
T ss_dssp CGGGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TCHHH---H-------TTCSEEEEECGGGHHH
T ss_pred hcCCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hhhhH---h-------hcCCEEEEeccccCch
Confidence 13444455442000 0011112344566666533211110 00000 1 267899999999865
Q ss_pred CcccHHHHHHHHHHcC-CCEEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768 367 RQVEINEIEAVCHQYN-FMSWIEVSSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 367 ~~~~~e~~~~~~~~~~-~~~~~evSAktg~nv~~lf~~i~~~i~~ 410 (452)
+....+++.+++..++ ..+++++||++|.|++++|+++.+.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 180 VGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 3356677777777653 3469999999999999999999887754
No 195
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.34 E-value=1.1e-12 Score=145.38 Aligned_cols=118 Identities=13% Similarity=0.243 Sum_probs=87.3
Q ss_pred cccEEEeeecccCCcceeeeccccc-cccc---------------cCCcceeeeEEEEEEee-----------ecCCeeE
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNK-FLDN---------------YKNTVGVDFSTKLLSHK-----------KYGGRPV 292 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~-~~~~---------------~~~t~~~d~~~~~i~~~-----------~~~~~~~ 292 (452)
..+|+|+|..|+|||||+++|+... .+.. ...+++.......+.+. ..++..+
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 4689999999999999999998631 1110 11112222212222221 0134578
Q ss_pred EEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365 (452)
Q Consensus 293 ~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~ 365 (452)
.+.||||+|+.+|...+..+++.+|++|+|||++++.+++....|....... +|+++|+||+|+.
T Consensus 99 ~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~--------~p~ilviNK~D~~ 163 (842)
T 1n0u_A 99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGER--------IKPVVVINKVDRA 163 (842)
T ss_dssp EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTT--------CEEEEEEECHHHH
T ss_pred eEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcC--------CCeEEEEECCCcc
Confidence 9999999999999999999999999999999999999999987777655443 8999999999986
No 196
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.32 E-value=2.9e-12 Score=128.65 Aligned_cols=167 Identities=13% Similarity=0.112 Sum_probs=101.1
Q ss_pred ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeee-----------cC-----CeeEEEEEEecCCcch
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK-----------YG-----GRPVKLQIWDIAGQDR 304 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~-----------~~-----~~~~~l~l~DtaG~e~ 304 (452)
++|+++|.||+|||||+|++++........+.++.+.......+.. .. .....+.+|||||+.+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999997543222222222111111112200 00 1245789999999876
Q ss_pred hh----hhh---hhhhcCCCEEEEEEeCCCh----------hhHHHHHHHHHHHH-------------------------
Q psy14768 305 YI----CMS---RVYYQNSDGCIIMFDLTNR----------KSFESVVQWKHDLD------------------------- 342 (452)
Q Consensus 305 ~~----~~~---~~~i~~ad~vIlV~D~t~~----------~S~~~~~~~~~~i~------------------------- 342 (452)
+. .+. ...++++|++++|+|+++. ..+.++..+..++.
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 53 222 2358999999999999862 22333332222220
Q ss_pred --------------hhh----------------hhcCCCCCcEEEEEECCCC--CCC--cccHHHHHHHHHHcCCCEEEE
Q psy14768 343 --------------SKC----------------ILDNGAMLPCLLLASKCDL--PDR--QVEINEIEAVCHQYNFMSWIE 388 (452)
Q Consensus 343 --------------~~~----------------~~~~~~~~piilV~NK~Dl--~~~--~~~~e~~~~~~~~~~~~~~~e 388 (452)
... .+.....+|+++|+||.|. .+. ....+.+++++...+.. +++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~-vv~ 240 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAE-VVV 240 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCE-EEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCe-EEE
Confidence 000 0001234899999999973 222 44567788888887754 999
Q ss_pred ecCCCCccHHHHHHHHHHHH
Q psy14768 389 VSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 389 vSAktg~nv~~lf~~i~~~i 408 (452)
+||+...++.++++.-....
T Consensus 241 iSAk~E~el~eL~~~~~~~~ 260 (368)
T 2dby_A 241 VSARLEAELAELSGEEAREL 260 (368)
T ss_dssp ECHHHHHHHHTSCHHHHHHH
T ss_pred eechhHHHHHHhchHHHHHH
Confidence 99999888887776544333
No 197
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.28 E-value=3.5e-13 Score=134.83 Aligned_cols=105 Identities=9% Similarity=-0.003 Sum_probs=63.5
Q ss_pred eEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCccc
Q psy14768 291 PVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVE 370 (452)
Q Consensus 291 ~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~ 370 (452)
.+.+.|+||+|.... .......+|++++|+|++++...+.+.. .+ ...|.++|+||+|+.+....
T Consensus 166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i---------l~~~~ivVlNK~Dl~~~~~~ 230 (349)
T 2www_A 166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI---------IEMADLVAVTKSDGDLIVPA 230 (349)
T ss_dssp TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------------------------CCSCSEEEECCCSGGGHHHH
T ss_pred CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH---------HhcCCEEEEeeecCCCchhH
Confidence 456889999996421 2344679999999999987643332211 11 13688999999998641100
Q ss_pred HHHHHHHHHHc---------CCCEEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768 371 INEIEAVCHQY---------NFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 371 ~e~~~~~~~~~---------~~~~~~evSAktg~nv~~lf~~i~~~i~~ 410 (452)
......+...+ ...+++++||++|.|+++++++|.+.+..
T Consensus 231 ~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 231 RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 11122232211 13458999999999999999999887643
No 198
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.27 E-value=1.4e-12 Score=130.82 Aligned_cols=105 Identities=9% Similarity=0.044 Sum_probs=70.7
Q ss_pred eEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcc-
Q psy14768 291 PVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQV- 369 (452)
Q Consensus 291 ~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~- 369 (452)
.+.+.||||+|... .....+..+|++|+|+|++....++.+.. ....+|++||+||+|+.....
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~------------~~~~~p~ivVlNK~Dl~~~~~~ 235 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK------------GVLELADIVVVNKADGEHHKEA 235 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT------------TSGGGCSEEEEECCCGGGHHHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH------------hHhhcCCEEEEECCCCcChhHH
Confidence 46789999999532 22344689999999999877654433221 012369999999999864111
Q ss_pred --cHHHHHHHHHHc-----C-CCEEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768 370 --EINEIEAVCHQY-----N-FMSWIEVSSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 370 --~~e~~~~~~~~~-----~-~~~~~evSAktg~nv~~lf~~i~~~i~~ 410 (452)
..++.......+ + ..+++++||++|.||+++++++.+.+..
T Consensus 236 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 236 RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 111222222222 1 2458999999999999999999988765
No 199
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.26 E-value=1.4e-11 Score=130.09 Aligned_cols=113 Identities=12% Similarity=0.114 Sum_probs=84.8
Q ss_pred ccEEEeeecccCCcceeeeccccc-----------------cc-----cccCCcceeeeEEEEEEeeecCCeeEEEEEEe
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNK-----------------FL-----DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~-----------------~~-----~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~D 298 (452)
=+|+|+|..++|||||..+++-.. .. .+..-++++......+.+ +.+.++|+|
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-----~~~~iNlID 106 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-----RDRVVNLLD 106 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-----TTEEEEEEC
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-----CCEEEEEEe
Confidence 468999999999999999986210 00 111123333333333433 557789999
Q ss_pred cCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366 (452)
Q Consensus 299 taG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~ 366 (452)
|||+..|..-....++-+|++|+|+|+.++..-|....|....+.. +|+++++||+|...
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~--------lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRA--------TPVMTFVNKMDREA 166 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTT--------CCEEEEEECTTSCC
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhC--------CceEEEEecccchh
Confidence 9999999988899999999999999999999888888887776665 99999999999754
No 200
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.25 E-value=3.5e-12 Score=134.86 Aligned_cols=121 Identities=18% Similarity=0.220 Sum_probs=81.5
Q ss_pred CcccEEEeeecccCCcceeeeccccccc---cccCCcceeeeEEEE-----------------EEeeecC--C-----e-
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFL---DNYKNTVGVDFSTKL-----------------LSHKKYG--G-----R- 290 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~---~~~~~t~~~d~~~~~-----------------i~~~~~~--~-----~- 290 (452)
...+|+|+|.+|+|||||+|+|++..+. ....+++........ ..+..+. + .
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4589999999999999999999997762 444454422110000 0000000 0 0
Q ss_pred ---------eEEEEEEecCCcch-----------hhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCC
Q psy14768 291 ---------PVKLQIWDIAGQDR-----------YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNG 350 (452)
Q Consensus 291 ---------~~~l~l~DtaG~e~-----------~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~ 350 (452)
...+.||||+|+.. |..+...++..+|++|+|+|+++....+....|+..+...
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~------ 217 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH------ 217 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC------
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc------
Confidence 02588999999864 4556677889999999999998864445555566555433
Q ss_pred CCCcEEEEEECCCCCC
Q psy14768 351 AMLPCLLLASKCDLPD 366 (452)
Q Consensus 351 ~~~piilV~NK~Dl~~ 366 (452)
..|+++|+||+|+..
T Consensus 218 -~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 218 -EDKIRVVLNKADMVE 232 (550)
T ss_dssp -GGGEEEEEECGGGSC
T ss_pred -CCCEEEEEECCCccC
Confidence 489999999999975
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.18 E-value=7.9e-12 Score=124.55 Aligned_cols=104 Identities=14% Similarity=0.084 Sum_probs=66.5
Q ss_pred eEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCC-cc
Q psy14768 291 PVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDR-QV 369 (452)
Q Consensus 291 ~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~-~~ 369 (452)
.+.+.||||+|...+.. .....+|++|+|+|++.+..++.+.. .. . ++|.++|+||+|+... ..
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-~--------~~p~ivv~NK~Dl~~~~~~ 212 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-M--------EVADLIVINKDDGDNHTNV 212 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-H--------HHCSEEEECCCCTTCHHHH
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-h--------cccCEEEEECCCCCChHHH
Confidence 46789999999754432 24689999999999976543221111 00 1 2688999999998751 11
Q ss_pred c--HHHHHHHHHHcC------CCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768 370 E--INEIEAVCHQYN------FMSWIEVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 370 ~--~e~~~~~~~~~~------~~~~~evSAktg~nv~~lf~~i~~~i~ 409 (452)
. .++.......++ ..+++.+||++|.|++++++++.+.+.
T Consensus 213 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 213 AIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1 112222222333 356899999999999999999988765
No 202
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.18 E-value=4e-11 Score=117.44 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=79.1
Q ss_pred cchhhhhhhhhhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cccc-HHHHHHHH
Q psy14768 302 QDRYICMSRVYYQNSDGCIIMFDLTNRK-SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVE-INEIEAVC 378 (452)
Q Consensus 302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~-S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~-~e~~~~~~ 378 (452)
++++..+...+++++|++|+|||++++. +++.+..|+..++.. ++|++||+||+|+.+ .++. .++..++.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~-------~~~~ilV~NK~DL~~~~~v~~~~~~~~~~ 138 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF-------KVEPVIVFNKIDLLNEEEKKELERWISIY 138 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT-------TCEEEEEECCGGGCCHHHHHHHHHHHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC-------CCCEEEEEEcccCCCccccHHHHHHHHHH
Confidence 7788888888999999999999999986 899889998877653 599999999999976 2222 44556667
Q ss_pred HHcCCCEEEEecCCCCccHHHHHHHHH
Q psy14768 379 HQYNFMSWIEVSSKEHLMIEDSMNFLV 405 (452)
Q Consensus 379 ~~~~~~~~~evSAktg~nv~~lf~~i~ 405 (452)
+..++. ++++||++|.|++++|+.+.
T Consensus 139 ~~~g~~-~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 139 RDAGYD-VLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHTTCE-EEECCTTTCTTHHHHHHHTT
T ss_pred HHCCCe-EEEEECCCCCCHHHHHhhcc
Confidence 777774 99999999999999998754
No 203
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.17 E-value=1.4e-11 Score=133.55 Aligned_cols=159 Identities=14% Similarity=0.148 Sum_probs=98.8
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCccee------------------------------------------
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGV------------------------------------------ 275 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~------------------------------------------ 275 (452)
....+|+++|.+++|||||+|++++..+........+.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 34579999999999999999999987663221111110
Q ss_pred ---------eeEEEEEEeeecCCeeEEEEEEecCCcch-------------hhhhhhhhh-cCCCEEEEEEeCCChhhHH
Q psy14768 276 ---------DFSTKLLSHKKYGGRPVKLQIWDIAGQDR-------------YICMSRVYY-QNSDGCIIMFDLTNRKSFE 332 (452)
Q Consensus 276 ---------d~~~~~i~~~~~~~~~~~l~l~DtaG~e~-------------~~~~~~~~i-~~ad~vIlV~D~t~~~S~~ 332 (452)
+.....+.. .....+.|+||||... ...+...|+ ..+|++++|+|+++....+
T Consensus 129 ~g~~~~is~~~i~l~I~~----P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~ 204 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYS----PHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS 204 (772)
T ss_dssp HCSTTCCCSCCEEEEEEE----TTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSC
T ss_pred cCCCCcccccceEEEEec----CCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchh
Confidence 111111111 1123478999999543 223334444 5789999999999875555
Q ss_pred HHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHH---HHHHcCCCEEEEecCCCCccHHHHHHHHHHH
Q psy14768 333 SVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEA---VCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 333 ~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~---~~~~~~~~~~~evSAktg~nv~~lf~~i~~~ 407 (452)
+...+...+.. .+.|+|+|+||+|+.+.......+.. +....++.+++.+||++|.|++++++.+.+.
T Consensus 205 d~l~ll~~L~~-------~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 205 DALKIAKEVDP-------QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHHHHCT-------TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHHHHHh-------cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 54333333332 35899999999999862211111111 0001244456889999999999999988763
No 204
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.16 E-value=1e-10 Score=117.42 Aligned_cols=135 Identities=15% Similarity=0.122 Sum_probs=95.4
Q ss_pred cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh----hh---hhhh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI----CM---SRVY 312 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~----~~---~~~~ 312 (452)
..+|+++|.||||||||+|++++........+.++.+...-.+.+ .+ ..++|+||||...-. .+ ....
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~---~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~ 146 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRY---KG--AKIQMLDLPGIIDGAKDGRGRGKQVIAV 146 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEE---TT--EEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEe---CC--cEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence 468999999999999999999997766666788888877766666 44 567888999964311 11 1235
Q ss_pred hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---------CcccHHHHHHHHHHcCC
Q psy14768 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---------RQVEINEIEAVCHQYNF 383 (452)
Q Consensus 313 i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---------~~~~~e~~~~~~~~~~~ 383 (452)
+++||++++|+|++++. .+.+....++.... .....+|.+++.||+|... .....++++.+...+.+
T Consensus 147 i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~--~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~l 222 (376)
T 4a9a_A 147 ARTCNLLFIILDVNKPL--HHKQIIEKELEGVG--IRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRI 222 (376)
T ss_dssp HHHCSEEEEEEETTSHH--HHHHHHHHHHHHTT--EEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTC
T ss_pred HHhcCccccccccCccH--HHHHHHHHHHHHhh--HhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcc
Confidence 78999999999999874 33334444444331 1124578889999999743 34566777777776654
No 205
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.16 E-value=3.3e-11 Score=114.78 Aligned_cols=112 Identities=13% Similarity=-0.013 Sum_probs=70.0
Q ss_pred EEEEEEecCCcchhhhhhh------hhhcCCCEEEEEEeCCChhhHHHHHHHH-HHHHhhhhhcCCCCCcEEEEEECCCC
Q psy14768 292 VKLQIWDIAGQDRYICMSR------VYYQNSDGCIIMFDLTNRKSFESVVQWK-HDLDSKCILDNGAMLPCLLLASKCDL 364 (452)
Q Consensus 292 ~~l~l~DtaG~e~~~~~~~------~~i~~ad~vIlV~D~t~~~S~~~~~~~~-~~i~~~~~~~~~~~~piilV~NK~Dl 364 (452)
+.+.||||+|+..+..... ..+.+ +++|+++|+....+..+..... ...... ...++|+++|+||+|+
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~----~~~~~p~~iv~NK~D~ 183 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID----LRLGATTIPALNKVDL 183 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH----HHHTSCEEEEECCGGG
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh----cccCCCeEEEEecccc
Confidence 5799999999876543322 24566 8999999986544433332211 111111 1124899999999998
Q ss_pred CCCcccHHHHHHH----------------------------HHHcCC-CEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768 365 PDRQVEINEIEAV----------------------------CHQYNF-MSWIEVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 365 ~~~~~~~e~~~~~----------------------------~~~~~~-~~~~evSAktg~nv~~lf~~i~~~i~ 409 (452)
.... ..+++.++ .+.++. .+++++||+++.|++++|+++.+.+.
T Consensus 184 ~~~~-~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 184 LSEE-EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp CCHH-HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccc-cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 7511 01111111 234333 25899999999999999999987764
No 206
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.12 E-value=1.9e-11 Score=131.59 Aligned_cols=112 Identities=14% Similarity=0.219 Sum_probs=84.1
Q ss_pred cEEEeeecccCCcceeeeccccc-cc-----c-------ccC-----CcceeeeEEEEEEeeecCCeeEEEEEEecCCcc
Q psy14768 242 PILITGDSTVGKTSYVQGFVQNK-FL-----D-------NYK-----NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~~~-~~-----~-------~~~-----~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e 303 (452)
+|+|+|..++|||||..+++... .+ . ++. -+++.... .+.+ ..+.+.++|+||||+.
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~--~~~~---~~~~~~iNlIDTPGH~ 78 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTG--ITSF---QWENTKVNIIDTPGHM 78 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCC--CCCC---BCSSCBCCCEECCCSS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEee--eEEE---EECCEEEEEEECCCcH
Confidence 68999999999999999887311 00 0 000 02222222 2222 4456678899999999
Q ss_pred hhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366 (452)
Q Consensus 304 ~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~ 366 (452)
.|.......++-+|++|+|+|+.++..-|....|....... +|.|+++||+|...
T Consensus 79 DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~--------lp~i~~INKmDr~~ 133 (638)
T 3j25_A 79 DFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG--------IPTIFFINKIDQNG 133 (638)
T ss_dssp STHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHT--------CSCEECCEECCSSS
T ss_pred HHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcC--------CCeEEEEecccccc
Confidence 99998899999999999999999998878777777777666 89999999999753
No 207
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.02 E-value=1.5e-09 Score=118.20 Aligned_cols=117 Identities=15% Similarity=0.136 Sum_probs=85.0
Q ss_pred ccEEEeeecccCCcceeeeccccccc------c------------ccCCcceeeeEEEEEEeee--cCCeeEEEEEEecC
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFL------D------------NYKNTVGVDFSTKLLSHKK--YGGRPVKLQIWDIA 300 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~------~------------~~~~t~~~d~~~~~i~~~~--~~~~~~~l~l~Dta 300 (452)
=+|+|+|..++|||||..+|+...-. . +..-++++......+.+.. .+.+.+.++|+|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 36899999999999999998731100 0 1111222222223333311 11236889999999
Q ss_pred CcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365 (452)
Q Consensus 301 G~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~ 365 (452)
|+-.|..-....++-+|++|+|+|+.++..-|....|....... +|+++|+||.|..
T Consensus 94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~--------lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYG--------VPRIVYVNKMDRQ 150 (709)
T ss_dssp SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHT--------CCEEEEEECSSST
T ss_pred CCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcC--------CCeEEEEcccccc
Confidence 99999988889999999999999999999888888888887776 9999999999974
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.97 E-value=5e-10 Score=111.29 Aligned_cols=104 Identities=8% Similarity=0.012 Sum_probs=64.5
Q ss_pred eEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Ccc
Q psy14768 291 PVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQV 369 (452)
Q Consensus 291 ~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~ 369 (452)
.+.+.|+||+|...-. ......+|++++|+|+..+...+.+..+ +. ..+.++|+||+|+.. ...
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~---------~~~~ivvlNK~Dl~~~~~~ 211 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF---------ELADMIAVNKADDGDGERR 211 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH---------HHCSEEEEECCSTTCCHHH
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh---------ccccEEEEEchhccCchhH
Confidence 4678899999975321 2345789999999998754322211111 11 146677889999754 222
Q ss_pred cHHHHHHHHHHc---C------CCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768 370 EINEIEAVCHQY---N------FMSWIEVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 370 ~~e~~~~~~~~~---~------~~~~~evSAktg~nv~~lf~~i~~~i~ 409 (452)
.....+.+...+ . ..+++.+||+++.|++++++.+.+...
T Consensus 212 s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 212 ASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222233333221 2 345889999999999999999988764
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.84 E-value=1.6e-09 Score=99.19 Aligned_cols=110 Identities=9% Similarity=0.038 Sum_probs=67.1
Q ss_pred ecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcC-CCCCcEEEEEECC-CCCCCcccHHHHH
Q psy14768 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDN-GAMLPCLLLASKC-DLPDRQVEINEIE 375 (452)
Q Consensus 298 DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~-~~~~piilV~NK~-Dl~~~~~~~e~~~ 375 (452)
|.+||++++.+|..||+++|++|+|+|.+|..-++ .+.-+.++........ ..+.|++|++||. |+.. .....++.
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~-Ams~~EI~ 185 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK-RMPCFYLA 185 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC-BCCHHHHH
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC-CCCHHHHH
Confidence 45689999999999999999999999999885444 2222222222211111 2578999999995 6754 33333333
Q ss_pred HHHH----HcCCCEEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768 376 AVCH----QYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 376 ~~~~----~~~~~~~~evSAktg~nv~~lf~~i~~~i~~ 410 (452)
+... ...+. ++.|||++|+|+.+.++|+...+..
T Consensus 186 e~L~L~~l~R~W~-Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 186 HELHLNLLNHPWL-VQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp HHTTGGGGCSCEE-EEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred HHcCCcCCCCCEE-EEEeECCCCcCHHHHHHHHHHHHHh
Confidence 3221 11222 5899999999999999999876643
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.83 E-value=1.2e-09 Score=110.15 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=52.4
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCe---------------eEEEEEEecCCcc
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR---------------PVKLQIWDIAGQD 303 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~---------------~~~l~l~DtaG~e 303 (452)
...+|+++|.+|||||||+|++.+..+.....++++.+.....+.+ .+. ...+.+|||||+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v---~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPV---PDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEEC---CCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEE---CCccceeeccccCcccccccccEEEECCCcc
Confidence 3579999999999999999999987766666677776665555554 322 2358999999987
Q ss_pred hhhh-------hhhhhhcCCCEEEEEEeCCChh
Q psy14768 304 RYIC-------MSRVYYQNSDGCIIMFDLTNRK 329 (452)
Q Consensus 304 ~~~~-------~~~~~i~~ad~vIlV~D~t~~~ 329 (452)
++.. ....+++++|++++|+|+++..
T Consensus 98 ~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 98 KGAHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp ---------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cccchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 6543 3356789999999999998643
No 211
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.79 E-value=3.3e-09 Score=98.66 Aligned_cols=44 Identities=34% Similarity=0.691 Sum_probs=28.8
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~ 149 (452)
.+.+||+|||++|||||||++||+++.|...|.+|+|.+|..+.
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~ 54 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKT 54 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEE
Confidence 34589999999999999999999999999889999988776533
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.70 E-value=5.7e-08 Score=98.06 Aligned_cols=85 Identities=15% Similarity=0.159 Sum_probs=62.7
Q ss_pred cccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCe---------------eEEEEEEecCCcc
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGR---------------PVKLQIWDIAGQD 303 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~---------------~~~l~l~DtaG~e 303 (452)
..+++++|.+|+|||||+|.+++... .....|+++.+...-.+.+ .+. ...+.+||++|..
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v---~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAV---PDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEE---CCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeee---CCcchhhhhhhcccccccCcceEEEeccccc
Confidence 47899999999999999999998666 6666676666665555555 331 1358899999954
Q ss_pred h-------hhhhhhhhhcCCCEEEEEEeCCC
Q psy14768 304 R-------YICMSRVYYQNSDGCIIMFDLTN 327 (452)
Q Consensus 304 ~-------~~~~~~~~i~~ad~vIlV~D~t~ 327 (452)
. +.......++.+|++++|+|+.+
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 22233456789999999999874
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.69 E-value=4.4e-08 Score=98.39 Aligned_cols=98 Identities=13% Similarity=0.146 Sum_probs=75.5
Q ss_pred CcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHH---
Q psy14768 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAV--- 377 (452)
Q Consensus 301 G~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~--- 377 (452)
.++.|..+...+++.+|++|+|+|++++. ..|...+.+.. .++|+++|+||+|+.+.....+...+|
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~ 124 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMRY 124 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHHH
Confidence 46789999999999999999999999853 45666666542 368999999999997644444444444
Q ss_pred -HHHcCCC--EEEEecCCCCccHHHHHHHHHHHH
Q psy14768 378 -CHQYNFM--SWIEVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 378 -~~~~~~~--~~~evSAktg~nv~~lf~~i~~~i 408 (452)
++..++. .++++||++|.|++++++.+.+..
T Consensus 125 ~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 125 SAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 5666762 589999999999999999987643
No 214
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.64 E-value=1.1e-08 Score=97.91 Aligned_cols=108 Identities=10% Similarity=0.070 Sum_probs=71.0
Q ss_pred ecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHH---HHHHHhhhhhcCCCCCcEEEEEEC-CCCCCCcccHHH
Q psy14768 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQW---KHDLDSKCILDNGAMLPCLLLASK-CDLPDRQVEINE 373 (452)
Q Consensus 298 DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~---~~~i~~~~~~~~~~~~piilV~NK-~Dl~~~~~~~e~ 373 (452)
|.+||++++.+|..||+++|++|+|+|++|...++..... ...+... ....+.|++|++|| .|+.. .....+
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~---~~l~~apLLVfANKkQDlp~-Ams~~E 268 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPA---FGSSGRPLLVLSCISQGDVK-RMPCFY 268 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHH---HHCTTCCEEEEEEESSTTSC-BCCHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcch---hhcCCCeEEEEeCCcccccC-CCCHHH
Confidence 3578999999999999999999999999998654422211 1122111 01256899999997 58864 233333
Q ss_pred HHHHHH----HcCCCEEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768 374 IEAVCH----QYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 374 ~~~~~~----~~~~~~~~evSAktg~nv~~lf~~i~~~i~~ 410 (452)
+.+... ...+. +..|||++|+|+.+.++|+.+.+..
T Consensus 269 I~e~L~L~~l~r~W~-Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 269 LAHELHLNLLNHPWL-VQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp HHHHTTGGGGCSCEE-EEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred HHHHcCCccCCCcEE-EEecccCCCcCHHHHHHHHHHHHHh
Confidence 332221 11222 5899999999999999999987643
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.56 E-value=1e-07 Score=95.67 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=74.1
Q ss_pred CcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHH---
Q psy14768 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAV--- 377 (452)
Q Consensus 301 G~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~--- 377 (452)
.++.|+++...+++.++++|+|+|+++..+ .|...+.+.. .++|+++|+||+|+.+.....+...+|
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~ 126 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRR 126 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHH
Confidence 588999999999999999999999998763 3444444441 368999999999998644444444444
Q ss_pred -HHHcCC--CEEEEecCCCCccHHHHHHHHHHHH
Q psy14768 378 -CHQYNF--MSWIEVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 378 -~~~~~~--~~~~evSAktg~nv~~lf~~i~~~i 408 (452)
.+..++ ..++++||++|.|++++++.+.+..
T Consensus 127 ~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 127 MAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 555666 3589999999999999999987654
No 216
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.44 E-value=1.1e-07 Score=85.57 Aligned_cols=37 Identities=19% Similarity=0.438 Sum_probs=33.0
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccc
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~ 142 (452)
...+||+|||++|||||||++||+++.|...+.+|.+
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 4458999999999999999999999999988888854
No 217
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.41 E-value=1.3e-07 Score=86.27 Aligned_cols=48 Identities=38% Similarity=0.639 Sum_probs=32.8
Q ss_pred cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
....+||+|||++|||||||+++|++..|...+.+|+|.++....+..
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~ 73 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEI 73 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEE
Confidence 355699999999999999999999999998889999999987766543
No 218
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.39 E-value=3.8e-07 Score=82.00 Aligned_cols=47 Identities=28% Similarity=0.580 Sum_probs=36.5
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
...+||+|+|++|||||||+++|++..|...+.+++|.++....+..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~ 65 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI 65 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE
Confidence 45699999999999999999999999999888899998887665443
No 219
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.34 E-value=2.1e-07 Score=82.22 Aligned_cols=46 Identities=41% Similarity=0.668 Sum_probs=40.4
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
..+||+++|++|||||||+++|+++.|...+.+|+|.++....+..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~ 50 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITL 50 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEe
Confidence 4589999999999999999999999998788899998887766554
No 220
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.32 E-value=5.5e-07 Score=80.95 Aligned_cols=48 Identities=40% Similarity=0.713 Sum_probs=41.3
Q ss_pred CcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 104 ~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
.....+||+|||++|||||||+++|++..|...+.+++|.++..+.+.
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~ 68 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVM 68 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEE
Confidence 345679999999999999999999999999988889998888765543
No 221
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.32 E-value=3.1e-07 Score=82.75 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=32.7
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCC-CCcCccccCce
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLD-NYKNTVGVDFS 146 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~-~~~~~~~~~~~ 146 (452)
...+||+|||++|||||||+++|++..|.. .+.+|+|....
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~ 56 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE 56 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE
Confidence 445899999999999999999999999997 88999985443
No 222
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.31 E-value=5.9e-07 Score=83.07 Aligned_cols=48 Identities=40% Similarity=0.681 Sum_probs=36.4
Q ss_pred cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
....+||+|+|++|||||||+++|++..|...+.+|+|.++....+..
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~ 57 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI 57 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE
Confidence 356799999999999999999999999999888999999987765543
No 223
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.30 E-value=8.4e-07 Score=80.67 Aligned_cols=48 Identities=33% Similarity=0.659 Sum_probs=41.9
Q ss_pred cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
.+..+||+|+|++|||||||+++|.+..|...+.+|+|.++....+..
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~ 52 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL 52 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE
Confidence 355689999999999999999999999999899999999987665543
No 224
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.30 E-value=2.3e-07 Score=96.51 Aligned_cols=155 Identities=14% Similarity=0.107 Sum_probs=87.5
Q ss_pred CcccEEEeeecccCCcceeeecc------cccc-cccc---CCcc-----------eeeeEEEEEE----------eeec
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFV------QNKF-LDNY---KNTV-----------GVDFSTKLLS----------HKKY 287 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~------~~~~-~~~~---~~t~-----------~~d~~~~~i~----------~~~~ 287 (452)
....|+++|.+|+||||+++++. +.+. +.+. .+.. +.++...... +..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999998 3322 1111 1100 1111110000 0000
Q ss_pred CCeeEEEEEEecCCcchhh-hhhh---hh--hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcE-EEEEE
Q psy14768 288 GGRPVKLQIWDIAGQDRYI-CMSR---VY--YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC-LLLAS 360 (452)
Q Consensus 288 ~~~~~~l~l~DtaG~e~~~-~~~~---~~--i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~pi-ilV~N 360 (452)
....+.+.||||+|..... .++. .+ +..+|.+++|+|++.... .+.. ...+... +|+ +||+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~-a~~~~~~--------~~i~gvVlN 248 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQ-AKAFKDK--------VDVASVIVT 248 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHH-HHHHHHH--------HCCCCEEEE
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHH-HHHHHhh--------cCceEEEEe
Confidence 0134678999999975321 1111 11 237899999999988643 2222 2233333 575 89999
Q ss_pred CCCCCCCcccHHHHHHHHHHcCCC-----------------EEEEecCCCCcc-HHHHHHHHHHH
Q psy14768 361 KCDLPDRQVEINEIEAVCHQYNFM-----------------SWIEVSSKEHLM-IEDSMNFLVDR 407 (452)
Q Consensus 361 K~Dl~~~~~~~e~~~~~~~~~~~~-----------------~~~evSAktg~n-v~~lf~~i~~~ 407 (452)
|+|...+. ..+..+...++.+ +.+++|+..|.+ +.++++++.+.
T Consensus 249 K~D~~~~~---g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 249 KLDGHAKG---GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CTTSCCCC---THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred CCccccch---HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 99986421 1122233333322 225689999999 99999988765
No 225
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.29 E-value=2.8e-08 Score=99.83 Aligned_cols=136 Identities=12% Similarity=0.108 Sum_probs=83.1
Q ss_pred cccEEEeeecccCCcceeeecccc------ccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhh----h
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQN------KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICM----S 309 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~------~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~----~ 309 (452)
..+++++|.+|+|||||+|++++. .......++++.+.... .. +.. +.++||||......+ .
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~--~~---~~~---~~liDtPG~~~~~~~~~~l~ 233 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEI--PL---ESG---ATLYDTPGIINHHQMAHFVD 233 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEE--EC---STT---CEEEECCSCCCCSSGGGGSC
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEE--Ee---CCC---eEEEeCCCcCcHHHHHHHHh
Confidence 358999999999999999999975 34445556666554332 22 222 678899996432211 1
Q ss_pred ---hhhh---cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCC
Q psy14768 310 ---RVYY---QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNF 383 (452)
Q Consensus 310 ---~~~i---~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~ 383 (452)
...+ +..|.+++++|......+..+.. +... ...+.|+++++||.|...........+.+.+.++.
T Consensus 234 ~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l----~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~ 305 (369)
T 3ec1_A 234 ARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYI----KGGRRSFVCYMANELTVHRTKLEKADSLYANQLGE 305 (369)
T ss_dssp TTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEE----ESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTT
T ss_pred HHHHHHHhcccccCceEEEEcCCceEEECCEEE----EEEc----cCCCceEEEEecCCcccccccHHHHHHHHHHhcCC
Confidence 1122 67899999999854321112111 1111 23458999999999987643344455566666665
Q ss_pred CEEEEecCC
Q psy14768 384 MSWIEVSSK 392 (452)
Q Consensus 384 ~~~~evSAk 392 (452)
. +...++.
T Consensus 306 ~-l~p~~~~ 313 (369)
T 3ec1_A 306 L-LSPPSKR 313 (369)
T ss_dssp T-BCSSCGG
T ss_pred c-cCCCCch
Confidence 4 4444443
No 226
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.29 E-value=3e-07 Score=81.21 Aligned_cols=48 Identities=40% Similarity=0.706 Sum_probs=38.9
Q ss_pred cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
....+||+++|++|||||||+++|++..+...+.++++.++....+..
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 53 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI 53 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEE
Confidence 456799999999999999999999999999889999988887666543
No 227
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.28 E-value=8.6e-07 Score=79.44 Aligned_cols=46 Identities=37% Similarity=0.728 Sum_probs=40.3
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
+..+||+|||++|||||||+++|++..|...+.+++|.++....+.
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~ 65 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVY 65 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEE
Confidence 4569999999999999999999999999888899999888765543
No 228
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.28 E-value=2.6e-07 Score=83.17 Aligned_cols=48 Identities=35% Similarity=0.706 Sum_probs=42.3
Q ss_pred CcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 104 ~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
..++.+||+|+|++|||||||+++|++..|...+.+++|.++....+.
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~ 66 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVY 66 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEE
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEE
Confidence 446679999999999999999999999999988999999888876654
No 229
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.26 E-value=1.4e-06 Score=76.84 Aligned_cols=45 Identities=11% Similarity=0.193 Sum_probs=37.8
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
.++|+++|++|||||||+++|++..|...+.++++.++....+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 52 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV 52 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEe
Confidence 479999999999999999999999999888888877776554433
No 230
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.25 E-value=5.5e-07 Score=80.87 Aligned_cols=47 Identities=30% Similarity=0.568 Sum_probs=41.5
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeecc
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 153 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (452)
..+||+++|++|||||||+++|++..|...+.+|+|.++....+...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~ 52 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLN 52 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEec
Confidence 45899999999999999999999999998899999998887765544
No 231
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.25 E-value=9.4e-07 Score=80.66 Aligned_cols=47 Identities=38% Similarity=0.596 Sum_probs=41.4
Q ss_pred cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
.++.+||+|||++|||||||+++|++..|...+.+|+|.++..+.+.
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~ 69 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVE 69 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEE
Confidence 35679999999999999999999999999988999999888766554
No 232
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.25 E-value=5.7e-07 Score=80.68 Aligned_cols=39 Identities=21% Similarity=0.350 Sum_probs=32.8
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhcc-CCCCCcCccccCc
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDF 145 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~-~~~~~~~~~~~~~ 145 (452)
..+||+++|++|||||||+++|++.. |...+.+|+|...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~ 59 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSI 59 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeE
Confidence 34899999999999999999999988 6677888887443
No 233
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.25 E-value=9.3e-07 Score=77.62 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=32.4
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
.+||++||++|||||||+|+|++..+...+.+++++++....+.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~ 46 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFE 46 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEE
Confidence 37999999999999999999999888766667777776655544
No 234
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.25 E-value=6.3e-07 Score=80.44 Aligned_cols=48 Identities=33% Similarity=0.682 Sum_probs=41.9
Q ss_pred cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
....+||+|+|++|||||||+++|++..+...+.++++.++....+..
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~ 60 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL 60 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE
Confidence 356799999999999999999999999999889999998887666544
No 235
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.24 E-value=6.8e-07 Score=80.55 Aligned_cols=46 Identities=39% Similarity=0.696 Sum_probs=33.3
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
...+||+|+|++|||||||+++|+++.|...+.+++|.++....+.
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~ 69 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVE 69 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEE
Confidence 4568999999999999999999999999888899999888766654
No 236
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.24 E-value=8e-07 Score=80.97 Aligned_cols=47 Identities=40% Similarity=0.761 Sum_probs=40.4
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
...+||+|+|++|||||||+++|++..|...+.+|++.++....+..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~ 64 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI 64 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEE
Confidence 34589999999999999999999999999889999999987766554
No 237
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.23 E-value=1.4e-06 Score=76.70 Aligned_cols=48 Identities=31% Similarity=0.713 Sum_probs=41.3
Q ss_pred CcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 104 ~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
.....+||+++|++|||||||+++|+++.+...+.+|+|.++..+.+.
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~ 58 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIE 58 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEE
Confidence 345679999999999999999999999999888889998888766544
No 238
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.23 E-value=9.4e-07 Score=78.61 Aligned_cols=48 Identities=33% Similarity=0.712 Sum_probs=41.3
Q ss_pred cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
.++.+||+++|++|||||||+++|+++.|...+.++++.++....+..
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~ 54 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV 54 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE
Confidence 356799999999999999999999999999888999988876665443
No 239
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.22 E-value=2e-06 Score=83.08 Aligned_cols=99 Identities=10% Similarity=-0.020 Sum_probs=68.1
Q ss_pred ecCCcc-hhhhhhhhhhcCCCEEEEEEeCCChhhHHH--HHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHH
Q psy14768 298 DIAGQD-RYICMSRVYYQNSDGCIIMFDLTNRKSFES--VVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEI 374 (452)
Q Consensus 298 DtaG~e-~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~--~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~ 374 (452)
+.||+. +........++++|++|.|+|+.++.+..+ +..|+ .++|+++|+||+|+.+.. ..+..
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l------------~~kp~ilVlNK~DL~~~~-~~~~~ 71 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL------------KNKPRIMLLNKADKADAA-VTQQW 71 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC------------SSSCEEEEEECGGGSCHH-HHHHH
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH------------CCCCEEEEEECcccCCHH-HHHHH
Confidence 566754 444455677899999999999999987653 33332 348999999999997511 11222
Q ss_pred HHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768 375 EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410 (452)
Q Consensus 375 ~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i~~ 410 (452)
.++.+..++. ++++||+++.+++++++.+.+.+..
T Consensus 72 ~~~~~~~g~~-~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 72 KEHFENQGIR-SLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHHHHTTTCC-EEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHhcCCc-EEEEECCCcccHHHHHHHHHHHHHH
Confidence 3333444664 8999999999999999988777654
No 240
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.22 E-value=1.3e-06 Score=78.76 Aligned_cols=47 Identities=36% Similarity=0.670 Sum_probs=41.3
Q ss_pred cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
.+..+||+|||++|||||||+++|++..|...+.+|+|.++....+.
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~ 72 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ 72 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEE
Confidence 35578999999999999999999999999988999999888766554
No 241
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.21 E-value=5.8e-07 Score=82.75 Aligned_cols=41 Identities=24% Similarity=0.443 Sum_probs=36.2
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
...+||+|||++|||||||++||+++.|...+.+|++.++.
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~ 65 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT 65 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE
Confidence 34589999999999999999999999999889999987774
No 242
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.21 E-value=2.9e-07 Score=81.88 Aligned_cols=46 Identities=35% Similarity=0.689 Sum_probs=25.1
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
+..+||+++|++|||||||+++|++..|...+.+|+|.++....+.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~ 51 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIE 51 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEE
Confidence 4568999999999999999999999999888899999888765544
No 243
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.20 E-value=6.4e-07 Score=81.38 Aligned_cols=47 Identities=32% Similarity=0.729 Sum_probs=30.3
Q ss_pred cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
....+||+|+|++|||||||+++|+++.|...+.+|+|.++....+.
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~ 68 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVN 68 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEE
Confidence 35679999999999999999999999999988899999888766554
No 244
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.20 E-value=1.2e-06 Score=77.24 Aligned_cols=47 Identities=43% Similarity=0.793 Sum_probs=38.3
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
...+||+++|++|||||||+++|++..|...+.+++|.++....+..
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~ 52 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTV 52 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEE
Confidence 34689999999999999999999999999889999999887776554
No 245
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.20 E-value=6.7e-07 Score=81.00 Aligned_cols=46 Identities=39% Similarity=0.691 Sum_probs=30.3
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
...+||+|+|++|||||||+++|+++.|...+.+++|.++....+.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~ 71 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLI 71 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEE
Confidence 3458999999999999999999999999888889999888766544
No 246
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.18 E-value=2.2e-06 Score=85.99 Aligned_cols=51 Identities=20% Similarity=0.386 Sum_probs=37.0
Q ss_pred CCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768 351 AMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408 (452)
Q Consensus 351 ~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i 408 (452)
...|++++.||+|... .++.+.+. ....++++|+..+.|++++.+.+.+.+
T Consensus 248 ~~~p~i~v~nKid~~~----~eele~l~---~~~~~~~is~~~e~gLd~Li~~~y~~L 298 (376)
T 4a9a_A 248 RYMPAIYVLNKIDSLS----IEELELLY---RIPNAVPISSGQDWNLDELLQVMWDRL 298 (376)
T ss_dssp EEECEEEEEECGGGSC----HHHHHHHT---TSTTEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hccceEEEEecccccC----HHHHHHHh---cccchhhhhhhhcccchhHHHHHHHHc
Confidence 4489999999999753 33433332 233478999999999999988776655
No 247
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.17 E-value=2.1e-06 Score=74.61 Aligned_cols=46 Identities=37% Similarity=0.769 Sum_probs=40.3
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
.+.+||+++|++|||||||+++|++..+...+.+|+|.++....+.
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~ 48 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQ 48 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEE
Confidence 3468999999999999999999999999988999999988766554
No 248
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.17 E-value=4.6e-07 Score=82.09 Aligned_cols=47 Identities=34% Similarity=0.712 Sum_probs=41.2
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
...+||+|+|++|||||||+|+|+++.|...+.++++.++....+..
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~ 77 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL 77 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEE
Confidence 45699999999999999999999999999888899998887766544
No 249
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.15 E-value=1.4e-06 Score=88.58 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=60.5
Q ss_pred ccEEEeeecccCCcceeeecccccccc----ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh-------h---
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY-------I--- 306 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~~----~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~-------~--- 306 (452)
++++|+|++|+|||||+|.+++..+.. ...++.........+.. .+-...+.++|++|.... .
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~---~~l~~~ltv~D~~~~g~~~~~~~~~~~i~ 119 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQE---SNVRLKLTIVSTVGFGDQINKEDSYKPIV 119 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC-----CEEEEEEEEEECCCC-CCHHHHSHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeec---CccccccchhhhhhhhhccccchhhhHHH
Confidence 458999999999999999998754321 11122222221111111 222346788999874321 0
Q ss_pred ----hhhhhh-------------hcCC--C-EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768 307 ----CMSRVY-------------YQNS--D-GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366 (452)
Q Consensus 307 ----~~~~~~-------------i~~a--d-~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~ 366 (452)
..+..+ +.++ | +++|+.|+..+.+..+++. +... ..++|+|+|.||+|...
T Consensus 120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Diei----lk~L-----~~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVT----MKKL-----DSKVNIIPIIAKADAIS 190 (427)
T ss_dssp HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHH----HHHT-----CSCSEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHH----HHHH-----hhCCCEEEEEcchhccc
Confidence 011111 1122 3 4666778776665555322 2222 14589999999999875
No 250
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.15 E-value=9.7e-07 Score=79.83 Aligned_cols=41 Identities=34% Similarity=0.497 Sum_probs=27.8
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
...+||++||++|||||||+++|++..|...+.+|++..+.
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~ 58 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS 58 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeE
Confidence 44589999999999999999999999988888888876553
No 251
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.14 E-value=1.7e-06 Score=77.65 Aligned_cols=41 Identities=17% Similarity=0.473 Sum_probs=35.9
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
...+||++||++|||||||+++|+++.|...+.+|++.++.
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~ 59 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS 59 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee
Confidence 34589999999999999999999999999889999876663
No 252
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.14 E-value=2.6e-06 Score=77.25 Aligned_cols=41 Identities=27% Similarity=0.465 Sum_probs=37.0
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~ 147 (452)
..+||+++|++|||||||+++|++..|...+.+|++.++..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~ 64 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA 64 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE
Confidence 35899999999999999999999999998899999888753
No 253
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.14 E-value=6.7e-07 Score=79.64 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=33.5
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~ 147 (452)
.+||+++|++|||||||+++|+++.| ..+.+|+|.....
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~ 59 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEE 59 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEE
Confidence 48999999999999999999999988 5777888766543
No 254
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.13 E-value=2e-06 Score=77.71 Aligned_cols=44 Identities=25% Similarity=0.372 Sum_probs=32.0
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeee
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLL 150 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~ 150 (452)
..+||+|||++|||||||+|||++..+. ....+++|.++..+.+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTL 49 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEE
Confidence 4589999999999999999999975443 2334567888765544
No 255
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.12 E-value=2.9e-06 Score=75.94 Aligned_cols=45 Identities=42% Similarity=0.732 Sum_probs=40.0
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
..+||+++|++|||||||+++|++..|...+.+++|.++....+.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~ 63 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVD 63 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEE
Confidence 458999999999999999999999999988899999888766554
No 256
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.12 E-value=2.5e-06 Score=78.68 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=32.8
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLL 150 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~ 150 (452)
...+||+|||++|||||||+|||++..+. ....+++|.++..+.+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i 80 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTL 80 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEE
Confidence 44689999999999999999999975543 2344568888765544
No 257
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.12 E-value=2.4e-06 Score=75.16 Aligned_cols=46 Identities=37% Similarity=0.668 Sum_probs=36.7
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
...+||+++|++|||||||+++|++..|...+.+++|.++....+.
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~ 50 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLE 50 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEE
Confidence 4568999999999999999999999999988999999888665544
No 258
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.12 E-value=2.4e-06 Score=74.39 Aligned_cols=45 Identities=42% Similarity=0.791 Sum_probs=33.5
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
..+||+++|++|||||||+++|++..|...+.++++.++....+.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~ 46 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD 46 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEE
Confidence 358999999999999999999999999888999999888766554
No 259
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.12 E-value=2.8e-06 Score=74.06 Aligned_cols=46 Identities=39% Similarity=0.610 Sum_probs=40.2
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
.+.+||+++|++|||||||+++|+++.+...+.+|++.++....+.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~ 49 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLN 49 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEE
Confidence 3568999999999999999999999999888999999888765544
No 260
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.10 E-value=2.7e-07 Score=92.64 Aligned_cols=129 Identities=11% Similarity=0.106 Sum_probs=75.7
Q ss_pred cccEEEeeecccCCcceeeeccccc-------cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhh----
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNK-------FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICM---- 308 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~-------~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~---- 308 (452)
..+++++|.+|+|||||+|++++.. ......++++.+... +.+ ... +.++||||......+
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~---~~~---~~liDtPG~~~~~~~~~~l 231 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID--IPL---DEE---SSLYDTPGIINHHQMAHYV 231 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE--EES---SSS---CEEEECCCBCCTTSGGGGS
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE--EEe---cCC---eEEEeCCCcCcHHHHHHHh
Confidence 3689999999999999999999752 112334445444332 222 222 678899996432211
Q ss_pred h----hhh--hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcC
Q psy14768 309 S----RVY--YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYN 382 (452)
Q Consensus 309 ~----~~~--i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~ 382 (452)
. ..+ .+..+.+++++|......+..+.. +... ...+.|+++|+||.|...........+.+.+.++
T Consensus 232 ~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l----~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g 303 (368)
T 3h2y_A 232 GKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYV----SGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAG 303 (368)
T ss_dssp CHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEE----ESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBT
T ss_pred hHHHHHHhccccccCceEEEEcCCCEEEEcceEE----EEEe----cCCCceEEEEecCccccccccHHHHHHHHHHHhC
Confidence 1 111 356788999998743321122111 1111 2345899999999999864444455556666666
Q ss_pred CC
Q psy14768 383 FM 384 (452)
Q Consensus 383 ~~ 384 (452)
..
T Consensus 304 ~~ 305 (368)
T 3h2y_A 304 DL 305 (368)
T ss_dssp TT
T ss_pred Cc
Confidence 53
No 261
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.09 E-value=3.3e-06 Score=75.51 Aligned_cols=47 Identities=45% Similarity=0.678 Sum_probs=40.8
Q ss_pred cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
....+||+++|++|||||||+++|++..|...+.+++|.++....+.
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~ 58 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIS 58 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEE
Confidence 34568999999999999999999999999988999999888766544
No 262
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.09 E-value=3.3e-06 Score=74.73 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=33.7
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeec
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~ 152 (452)
+||+|||++|||||||+|+|++..+. ....++.++++....+..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~ 49 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI 49 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEE
Confidence 69999999999999999999998765 344556666665554443
No 263
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.09 E-value=3.9e-06 Score=74.75 Aligned_cols=42 Identities=40% Similarity=0.699 Sum_probs=38.1
Q ss_pred cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
....+||+|+|++|||||||+++|++..|...+.+|+|.++.
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 49 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFR 49 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeee
Confidence 355689999999999999999999999998888999988876
No 264
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.08 E-value=2.6e-06 Score=76.32 Aligned_cols=42 Identities=21% Similarity=0.433 Sum_probs=36.8
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~ 147 (452)
...+||+|+|++|||||||+++|+++.|...+.+|+|.++..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~ 61 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK 61 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE
Confidence 345899999999999999999999999988888999877653
No 265
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.08 E-value=4.8e-06 Score=81.14 Aligned_cols=80 Identities=11% Similarity=0.005 Sum_probs=49.5
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCCCC-----------------C
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ-----------------T 168 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~ 168 (452)
+..+|+|||+||||||||+|+|++.+++ ....+..+++.....+.+........|+.+... .
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 3467999999999999999999999887 334443333332222222222223333333321 2
Q ss_pred CceeEEEEcCCCCCchhh
Q psy14768 169 PSYLILITGDSTVGKTSY 186 (452)
Q Consensus 169 ~~~~Il~vgD~~vGkTsl 186 (452)
....++||.|...+.+..
T Consensus 86 ~ad~il~VvD~~~~~~~~ 103 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPE 103 (301)
T ss_dssp SCSEEEEEEETTSCCCHH
T ss_pred cCCEEEEEEECCCCCChH
Confidence 344788899987776654
No 266
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.08 E-value=3.8e-06 Score=75.96 Aligned_cols=47 Identities=38% Similarity=0.721 Sum_probs=40.7
Q ss_pred cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
.+..+||+|+|++|||||||+++|++..|...+.+++|.++....+.
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~ 51 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIY 51 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEE
Confidence 34579999999999999999999999999888899998888765543
No 267
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.08 E-value=3.3e-06 Score=74.74 Aligned_cols=39 Identities=36% Similarity=0.627 Sum_probs=35.4
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
..+||+++|++|||||||+++|+++.|...+.+|++..+
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 43 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF 43 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE
Confidence 358999999999999999999999999888889988776
No 268
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.08 E-value=4.1e-06 Score=73.92 Aligned_cols=47 Identities=30% Similarity=0.562 Sum_probs=40.4
Q ss_pred cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
+...+||+++|++|||||||+++|++..+...+.+++|.++....+.
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~ 55 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLA 55 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEE
Confidence 34568999999999999999999999999988889999888766544
No 269
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.08 E-value=3.7e-06 Score=74.05 Aligned_cols=41 Identities=27% Similarity=0.577 Sum_probs=36.5
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
...+||+++|++|||||||+++|++..|...+.+|++.++.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~ 47 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT 47 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE
Confidence 34589999999999999999999999998888899887765
No 270
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.08 E-value=3.4e-06 Score=75.83 Aligned_cols=48 Identities=42% Similarity=0.598 Sum_probs=40.3
Q ss_pred CcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 104 ~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
.+...+||+|+|++|||||||+++|++..|...+.+++|.++....+.
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~ 66 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVP 66 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEE
Confidence 345569999999999999999999999999888899999888765543
No 271
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.07 E-value=2.5e-06 Score=74.00 Aligned_cols=35 Identities=23% Similarity=0.451 Sum_probs=30.5
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccC
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD 144 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~ 144 (452)
+||+++|++|||||||+++|+++.|. .+.+|+|..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~ 35 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN 35 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS-CCCCCSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC-cccCcCcee
Confidence 48999999999999999999998887 467888744
No 272
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.07 E-value=4.3e-06 Score=76.25 Aligned_cols=40 Identities=38% Similarity=0.576 Sum_probs=36.0
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
..+||+++|++|||||||+++|+++.|...+.+|++..+.
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~ 47 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS 47 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEE
Confidence 4589999999999999999999999998888999987664
No 273
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.07 E-value=2.1e-06 Score=78.61 Aligned_cols=47 Identities=38% Similarity=0.704 Sum_probs=40.9
Q ss_pred cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
.+..+||+|+|++|||||||+++|++..|...+.+|++.++..+.+.
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~ 68 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVV 68 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEE
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEE
Confidence 35679999999999999999999999999888889998888765544
No 274
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.06 E-value=3.3e-06 Score=81.08 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=32.8
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 150 (452)
.+||++||+||||||||||+|++..+.....++++++.....+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~ 45 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV 45 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE
Confidence 4799999999999999999999987654445666665544333
No 275
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.06 E-value=2e-06 Score=81.92 Aligned_cols=46 Identities=22% Similarity=0.232 Sum_probs=35.9
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
..+||+++|++|||||||||+|++..+.....++++++.....+..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~ 49 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY 49 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE
Confidence 4589999999999999999999998877555566666655544443
No 276
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.06 E-value=3.8e-06 Score=76.00 Aligned_cols=46 Identities=37% Similarity=0.700 Sum_probs=37.4
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
++.+||+|||++|||||||+++|++..|...+.+|+|.++....+.
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~ 48 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ 48 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEE
Confidence 3468999999999999999999999999988899998888765544
No 277
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.05 E-value=2.8e-06 Score=75.72 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=36.3
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (452)
.+||++||++|||||||+++|++..+...+.+++++++....+..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~ 51 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY 51 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEe
Confidence 489999999999999999999998776666677777766555543
No 278
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.05 E-value=1.8e-06 Score=77.21 Aligned_cols=41 Identities=27% Similarity=0.482 Sum_probs=28.5
Q ss_pred EEEEEEcCCCCchHHHHHHHhhc--cCCCCCcCccccCceeee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQN--KFLDNYKNTVGVDFSTKL 149 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~--~~~~~~~~~~~~~~~~~~ 149 (452)
+||+|||++|||||||+++|++. .|...+.+|+|.++....
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~ 45 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWP 45 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEee
Confidence 69999999999999999999984 566778899998886544
No 279
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.05 E-value=4.6e-06 Score=72.58 Aligned_cols=46 Identities=37% Similarity=0.572 Sum_probs=39.9
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
.+.+||+++|++|||||||+++|+++.|...+.+++|.++....+.
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~ 49 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQ 49 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEE
Confidence 3458999999999999999999999999888899998887765544
No 280
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.05 E-value=5.1e-06 Score=74.54 Aligned_cols=41 Identities=32% Similarity=0.566 Sum_probs=36.5
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
...+||+++|++|||||||+++|+++.|...+.+|++..+.
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~ 56 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA 56 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeE
Confidence 35689999999999999999999999998888999877763
No 281
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.04 E-value=5.5e-06 Score=73.00 Aligned_cols=47 Identities=38% Similarity=0.694 Sum_probs=39.5
Q ss_pred CcccEEEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeee
Q psy14768 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLL 150 (452)
Q Consensus 104 ~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~ 150 (452)
.....+||+++|++|||||||+++|++..|. ..+.+|++.++....+
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~ 53 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVL 53 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEE
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEE
Confidence 3455689999999999999999999999986 5788999888765543
No 282
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.04 E-value=3.3e-06 Score=77.19 Aligned_cols=41 Identities=37% Similarity=0.584 Sum_probs=36.1
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
...+||++||++|||||||+++|++..|...+.+|++.++.
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~ 66 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT 66 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE
Confidence 45689999999999999999999999999888999877663
No 283
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.04 E-value=2e-06 Score=82.64 Aligned_cols=47 Identities=21% Similarity=0.201 Sum_probs=38.1
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeeccc
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 154 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (452)
.++|+++|.+|||||||||+|++..+...+.++++++.....+....
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~ 49 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD 49 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC
Confidence 37999999999999999999999887766777777777666655433
No 284
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.04 E-value=4.7e-06 Score=72.47 Aligned_cols=46 Identities=33% Similarity=0.580 Sum_probs=39.4
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
...+||+++|++|||||||+++|+++.+...+.+++|.++....+.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~ 49 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC 49 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEE
Confidence 3458999999999999999999999999888889998887665543
No 285
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.04 E-value=2.9e-06 Score=76.78 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=35.3
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 150 (452)
...+||+|||++|||||||++||++..+...+.++.+.++..+.+
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~ 65 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRI 65 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEE
Confidence 456899999999999999999998776665566777777665543
No 286
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.03 E-value=2.6e-06 Score=76.15 Aligned_cols=38 Identities=24% Similarity=0.453 Sum_probs=33.2
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
.+||+++|++|||||||+++|+++.|. .+.+|+|....
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~ 53 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVE 53 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceE
Confidence 489999999999999999999998887 77888875544
No 287
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.03 E-value=4.8e-06 Score=72.36 Aligned_cols=44 Identities=36% Similarity=0.679 Sum_probs=38.8
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
.+||+++|++|||||||+++|+++.+...+.+++|.++....+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~ 46 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVT 46 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEE
Confidence 48999999999999999999999999988899998888665544
No 288
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.03 E-value=2.1e-06 Score=77.56 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=29.0
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~ 149 (452)
.+.+||++||++|||||||++++.++ |... ++++.++....
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~ 58 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKI 58 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccce
Confidence 34589999999999999999987764 4322 56666655444
No 289
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.03 E-value=5e-06 Score=73.02 Aligned_cols=45 Identities=33% Similarity=0.703 Sum_probs=39.5
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
..+||+++|++|||||||+++|++..|...+.++++.++....+.
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~ 57 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY 57 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEE
Confidence 458999999999999999999999999988899998888765543
No 290
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.02 E-value=5e-06 Score=75.26 Aligned_cols=46 Identities=46% Similarity=0.801 Sum_probs=39.9
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
...+||+|+|++|||||||+++|++..|...+.+|+|.++....+.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~ 51 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM 51 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEE
Confidence 4568999999999999999999999999988999998888765543
No 291
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.02 E-value=3.6e-06 Score=72.69 Aligned_cols=43 Identities=19% Similarity=0.320 Sum_probs=27.5
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeee
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~ 151 (452)
.||+++|++|||||||+++|++..+. ....++.+.++....+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~ 45 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVE 45 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEE
Confidence 68999999999999999999998865 34445555555544433
No 292
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.01 E-value=3.7e-06 Score=76.12 Aligned_cols=39 Identities=33% Similarity=0.589 Sum_probs=35.3
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
..+||+|||++|||||||+++|++..|...+.+|++..+
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 61 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY 61 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE
Confidence 458999999999999999999999999988888887666
No 293
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.01 E-value=3e-06 Score=76.34 Aligned_cols=39 Identities=26% Similarity=0.551 Sum_probs=35.2
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
.+||+++|++|||||||+++|+++.|...+.+|++.++.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~ 66 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR 66 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEE
Confidence 489999999999999999999999999888899886664
No 294
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.01 E-value=4.4e-06 Score=73.95 Aligned_cols=40 Identities=35% Similarity=0.567 Sum_probs=35.2
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
..+||+++|++|||||||+++|+++.|...+.+|++..+.
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~ 43 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS 43 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeE
Confidence 3589999999999999999999999998888888876553
No 295
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.00 E-value=1.4e-06 Score=79.82 Aligned_cols=45 Identities=38% Similarity=0.596 Sum_probs=37.7
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 150 (452)
...+||+|||++|||||||+|+|++..|...+.+|++.++.....
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~ 53 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTF 53 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEE
Confidence 456899999999999999999999999988888888776655443
No 296
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.99 E-value=2.3e-06 Score=81.41 Aligned_cols=46 Identities=20% Similarity=0.176 Sum_probs=37.3
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeeccc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 154 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (452)
.+|+++|.+|||||||||+|++..+.....++++++.....+....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~ 47 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE 47 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC
Confidence 4899999999999999999999887766667887777666655443
No 297
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.98 E-value=7.1e-06 Score=72.67 Aligned_cols=40 Identities=33% Similarity=0.619 Sum_probs=36.1
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
...+||+++|++|||||||+++|+++.|...+.++++..+
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~ 55 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY 55 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee
Confidence 4568999999999999999999999999988889887666
No 298
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.97 E-value=4.5e-06 Score=73.74 Aligned_cols=39 Identities=36% Similarity=0.589 Sum_probs=26.7
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
.+||+++|++|||||||+++|+++.|...+.+|++..+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~ 46 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS 46 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCCC----------CB
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE
Confidence 479999999999999999999999998888888876554
No 299
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.97 E-value=5.5e-06 Score=73.84 Aligned_cols=41 Identities=37% Similarity=0.584 Sum_probs=35.9
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
...+||+++|++|||||||+++|+++.|...+.+|++.++.
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~ 45 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT 45 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE
Confidence 45689999999999999999999999998888899876663
No 300
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.96 E-value=3.1e-06 Score=76.26 Aligned_cols=36 Identities=22% Similarity=0.425 Sum_probs=31.0
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccC
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD 144 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~ 144 (452)
.+||+++|++|||||||+++|+++.|. .+.+|+|..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~ 64 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN 64 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCcee
Confidence 489999999999999999999998887 567787733
No 301
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.96 E-value=3.2e-06 Score=80.90 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=39.8
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeeccccC
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG 156 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (452)
.++|+++|.+|||||||+|+|++..+.....+++++++....+.+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~ 51 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE 51 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce
Confidence 4799999999999999999999998876677888887776666554433
No 302
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.95 E-value=3.6e-06 Score=75.04 Aligned_cols=37 Identities=22% Similarity=0.426 Sum_probs=31.1
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccC
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD 144 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~ 144 (452)
..+||++||++|||||||+++|++..+. .+.+|+|..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~ 51 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN 51 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE
Confidence 3489999999999999999999988664 567888744
No 303
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.94 E-value=5.5e-06 Score=86.20 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=35.5
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~ 149 (452)
...+||+|||++|||||||+|+|+++.|. .+.+|+|.++....
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~~~ 362 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVT 362 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEEEEE
Confidence 44589999999999999999999999876 56788877765533
No 304
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.94 E-value=7.5e-06 Score=73.52 Aligned_cols=42 Identities=38% Similarity=0.574 Sum_probs=37.3
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~ 147 (452)
...+||++||++|||||||+++|++..|...+.+|++.++..
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~ 62 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH 62 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE
Confidence 456899999999999999999999999988889998777653
No 305
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.93 E-value=2.2e-06 Score=77.56 Aligned_cols=47 Identities=32% Similarity=0.543 Sum_probs=10.6
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhc--cCCCCCcCccccCceeeeeecc
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQN--KFLDNYKNTVGVDFSTKLLSHK 153 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~ 153 (452)
..+||+++|++|||||||+++|++. .|...+.+|+|.++....+...
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~ 67 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIP 67 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEEC
Confidence 4589999999999999999999999 8888889999888776665543
No 306
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.93 E-value=8.4e-06 Score=76.97 Aligned_cols=29 Identities=10% Similarity=0.313 Sum_probs=25.6
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCC
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLD 135 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~ 135 (452)
..++|+|||++|||||||+|++++..+..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~ 48 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFF 48 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC-
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCcc
Confidence 35899999999999999999999988763
No 307
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.93 E-value=6.8e-06 Score=74.81 Aligned_cols=40 Identities=30% Similarity=0.488 Sum_probs=29.7
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~ 147 (452)
.+||+++|++|||||||+++|+++.|...+.+|++.++..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~ 64 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA 64 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE
Confidence 4799999999999999999999999998888888877643
No 308
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.93 E-value=6.8e-06 Score=72.45 Aligned_cols=37 Identities=24% Similarity=0.491 Sum_probs=32.8
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
.+||++||++|||||||++||+++.|.. +.+|++..+
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~ 43 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY 43 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE
Confidence 4899999999999999999999999985 788887544
No 309
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.92 E-value=2.3e-05 Score=79.49 Aligned_cols=162 Identities=16% Similarity=0.158 Sum_probs=86.3
Q ss_pred cccEEEeeecccCCcceeeeccccccccc-cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh----hh-hhhhhh
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDN-YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY----IC-MSRVYY 313 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~-~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~----~~-~~~~~i 313 (452)
...++++|++|+|||||+|.+++-..... ....-+.+.....+.+ . ......+.+||++|.... .. +....+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~-q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPY-K-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEE-E-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEec-c-ccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 34789999999999999999987221110 0000000000000111 0 111124678999985321 11 111224
Q ss_pred cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC-------C-CcccHH----HHHHHH---
Q psy14768 314 QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP-------D-RQVEIN----EIEAVC--- 378 (452)
Q Consensus 314 ~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~-------~-~~~~~e----~~~~~~--- 378 (452)
...+.+++ ++... ..-+++......... ++|+++|.||.|+. . .....+ .+.++.
T Consensus 147 ~~~~~~~~-lS~G~-~~kqrv~la~aL~~~--------~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~ 216 (413)
T 1tq4_A 147 YEYDFFII-ISATR-FKKNDIDIAKAISMM--------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNT 216 (413)
T ss_dssp GGCSEEEE-EESSC-CCHHHHHHHHHHHHT--------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHH
T ss_pred CccCCeEE-eCCCC-ccHHHHHHHHHHHhc--------CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 45566665 77653 123443332222222 38999999999874 1 122222 333343
Q ss_pred -HHcC--CCEEEEecC--CCCccHHHHHHHHHHHHHHhhh
Q psy14768 379 -HQYN--FMSWIEVSS--KEHLMIEDSMNFLVDRIICSKR 413 (452)
Q Consensus 379 -~~~~--~~~~~evSA--ktg~nv~~lf~~i~~~i~~~~~ 413 (452)
.+.+ ....+.+|+ .++.+++++.+.+...+-+...
T Consensus 217 l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~ 256 (413)
T 1tq4_A 217 FRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR 256 (413)
T ss_dssp HHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred HHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchh
Confidence 1222 334688999 6677899999999877755543
No 310
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.91 E-value=7.9e-06 Score=71.26 Aligned_cols=37 Identities=22% Similarity=0.402 Sum_probs=31.7
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
.+||+++|++|||||||+++|+++.|. .+.+|+|...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~ 43 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNV 43 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccce
Confidence 489999999999999999999998886 5677876544
No 311
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.91 E-value=8.7e-06 Score=72.37 Aligned_cols=37 Identities=27% Similarity=0.540 Sum_probs=32.0
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
.+||+++|++|||||||+++|+++. ...+.+|+|...
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~ 54 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI 54 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce
Confidence 4899999999999999999999888 667888887443
No 312
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.91 E-value=3.5e-06 Score=75.34 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=31.6
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCC-----------CcCccccCceee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDN-----------YKNTVGVDFSTK 148 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~-----------~~~~~~~~~~~~ 148 (452)
...+||++||++|||||||+ +++.+.|... +.+|+|.++...
T Consensus 12 ~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 64 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPL 64 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCS
T ss_pred ccccEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeeccc
Confidence 45699999999999999999 5666666644 345777666543
No 313
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.88 E-value=1.2e-05 Score=70.27 Aligned_cols=43 Identities=28% Similarity=0.460 Sum_probs=30.7
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 150 (452)
+.+||+++|++|||||||+++|++..+... .++.|.++....+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~ 45 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTL 45 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEE
Confidence 358999999999999999999999888743 3456766654443
No 314
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.88 E-value=9.2e-06 Score=73.03 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=31.9
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
.+||++||++|||||||+++|+++.|. .+.+|++....
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~ 60 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSE 60 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeE
Confidence 369999999999999999999999886 57788876543
No 315
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.88 E-value=8.6e-06 Score=75.44 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=27.4
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
.+||+|||++|||||||+|+|+++.|.....+..+.++
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~ 66 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNL 66 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceee
Confidence 48999999999999999999999888633333333333
No 316
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.87 E-value=1.1e-05 Score=69.87 Aligned_cols=39 Identities=31% Similarity=0.600 Sum_probs=34.5
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
.+||+++|++|||||||+++|+++.+...+.+|++..+.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~ 41 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR 41 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE
Confidence 479999999999999999999999998888888876553
No 317
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.87 E-value=8.6e-06 Score=77.10 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=34.7
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhcc-CCCCCcCc-cccCceeeeeecc
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNK-FLDNYKNT-VGVDFSTKLLSHK 153 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~-~~~~~~~~-~~~~~~~~~~~~~ 153 (452)
.++|+|||.+|||||||+|+|++.. |...+.++ ++++.....+.+.
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~ 69 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG 69 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC
Confidence 4799999999999999999999887 55555555 5666554444443
No 318
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.87 E-value=1.2e-05 Score=71.17 Aligned_cols=41 Identities=22% Similarity=0.545 Sum_probs=35.0
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
...+||+++|++|||||||+++|++..|...+.+|.+..+.
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 56 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR 56 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEE
Confidence 34589999999999999999999999998888888766553
No 319
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.87 E-value=8.8e-06 Score=78.02 Aligned_cols=133 Identities=15% Similarity=0.183 Sum_probs=69.1
Q ss_pred cccEEEeeecccCCcceeeeccccccccc--------cC-CcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh-----
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQNKFLDN--------YK-NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY----- 305 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~--------~~-~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~----- 305 (452)
.++++++|++|+|||||+|.+++...... .. .+..... ..+.. .-.+-...+.++|+.|.-..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~--i~~v~-q~~~~~~~ltv~d~~~~g~~~~~~~ 78 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKA--IGHVI-EEGGVKMKLTVIDTPGFGDQINNEN 78 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCE--EEESC-C----CCEEEEECCCC--CCSBCTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeee--eEEEe-ecCCCcCCceEEechhhhhhcccHH
Confidence 36899999999999999999986322110 00 1111111 11111 00112236788999873110
Q ss_pred --hhhh---------------------hhhhcCCCEEEEEEeCC-ChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEEC
Q psy14768 306 --ICMS---------------------RVYYQNSDGCIIMFDLT-NRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361 (452)
Q Consensus 306 --~~~~---------------------~~~i~~ad~vIlV~D~t-~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK 361 (452)
..+. ...+..++++++++|.. .+..-.++ ..+..+... +++|+|.+|
T Consensus 79 ~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~-~~l~~L~~~--------~~vI~Vi~K 149 (270)
T 3sop_A 79 CWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL-EFMKHLSKV--------VNIIPVIAK 149 (270)
T ss_dssp CSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH-HHHHHHHTT--------SEEEEEETT
T ss_pred HHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH-HHHHHHHhc--------CcEEEEEec
Confidence 0000 01244579999999965 44444443 223333322 899999999
Q ss_pred CCCCCC---cccHHHHHHHHHHcCCC
Q psy14768 362 CDLPDR---QVEINEIEAVCHQYNFM 384 (452)
Q Consensus 362 ~Dl~~~---~~~~e~~~~~~~~~~~~ 384 (452)
+|.... ....+.+.+.....++.
T Consensus 150 ~D~lt~~e~~~~k~~i~~~l~~~~i~ 175 (270)
T 3sop_A 150 ADTMTLEEKSEFKQRVRKELEVNGIE 175 (270)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCcc
Confidence 998751 11222334444455554
No 320
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.87 E-value=1e-05 Score=71.49 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=32.5
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
.+||+++|++|||||||+++|+++.+ ..+.+|+|....
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~ 55 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVE 55 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceE
Confidence 48999999999999999999998888 577788875543
No 321
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.86 E-value=1.2e-05 Score=71.52 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=32.8
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
++||+++|++|||||||+++|++..|...+.++++.+..
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~ 39 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII 39 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE
Confidence 368999999999999999999999988777777655543
No 322
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.86 E-value=1.2e-05 Score=77.09 Aligned_cols=47 Identities=26% Similarity=0.488 Sum_probs=30.6
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhc-cCCCCC-------cCccccCceeeeeec
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQN-KFLDNY-------KNTVGVDFSTKLLSH 152 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~-~~~~~~-------~~~~~~~~~~~~~~~ 152 (452)
...++|+|||.+|||||||+|++++. .+...+ .+|+++++....+.+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 60 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE 60 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec
Confidence 34589999999999999999997654 444555 778887776666544
No 323
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.85 E-value=7.2e-06 Score=75.41 Aligned_cols=46 Identities=26% Similarity=0.590 Sum_probs=39.7
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
...+||+++|++|||||||+++|+.+.|...+.+++|.++....+.
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~ 58 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH 58 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEE
Confidence 4568999999999999999999999998888889998887766543
No 324
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.85 E-value=1.2e-05 Score=69.97 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=27.0
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
.+||+++|++|||||||+++|++..+...+.++.+.++....+.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~ 45 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIM 45 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEE
Confidence 58999999999999999999998888766666666666555443
No 325
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.84 E-value=7.4e-06 Score=74.20 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=28.6
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~ 147 (452)
.+||++||++|||||||+++|+++.|. .+.+|++.....
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~ 63 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEE 63 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeEE
Confidence 379999999999999999999998886 577888776543
No 326
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.84 E-value=7.1e-06 Score=84.64 Aligned_cols=78 Identities=22% Similarity=0.193 Sum_probs=50.7
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCC-----------------CCCCc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSP-----------------IQTPS 170 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 170 (452)
++|+|||.+|||||||+|+|++..+. ....++.++++....+........+.++.+. .....
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~a 304 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTA 304 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCCSC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcC
Confidence 78999999999999999999998766 5566777776654444433333333333332 12334
Q ss_pred eeEEEEcCCCCCchhh
Q psy14768 171 YLILITGDSTVGKTSY 186 (452)
Q Consensus 171 ~~Il~vgD~~vGkTsl 186 (452)
..+++|.|...+.+..
T Consensus 305 D~vl~VvD~s~~~~~~ 320 (462)
T 3geh_A 305 DLVLLTIDAATGWTTG 320 (462)
T ss_dssp SEEEEEEETTTCSCHH
T ss_pred CEEEEEeccCCCCCHH
Confidence 5688888877665544
No 327
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.84 E-value=7.6e-06 Score=84.74 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=37.8
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCC-----------------CCCCc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSP-----------------IQTPS 170 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 170 (452)
+||+|||.+|||||||+|+|++..+. ....++.++++....+....+...+.++.+. .....
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~a 313 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEA 313 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccC
Confidence 78999999999999999999998654 5666777777765555444433333333332 12334
Q ss_pred eeEEEEcCCCCCch
Q psy14768 171 YLILITGDSTVGKT 184 (452)
Q Consensus 171 ~~Il~vgD~~vGkT 184 (452)
..+++|.|...+.+
T Consensus 314 D~vl~VvD~s~~~s 327 (476)
T 3gee_A 314 DLILYLLDLGTERL 327 (476)
T ss_dssp SEEEEEEETTTCSS
T ss_pred CEEEEEEECCCCcc
Confidence 46777777766554
No 328
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.83 E-value=7.8e-06 Score=72.97 Aligned_cols=37 Identities=27% Similarity=0.444 Sum_probs=31.4
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
.+||++||++|||||||+++|+++.+. .+.+|+|...
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~ 58 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNL 58 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEE
Confidence 489999999999999999999988876 4677877544
No 329
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.82 E-value=1.1e-05 Score=75.42 Aligned_cols=47 Identities=15% Similarity=0.288 Sum_probs=32.4
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcC--ccccCceeeeeec
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKN--TVGVDFSTKLLSH 152 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~--~~~~~~~~~~~~~ 152 (452)
...++|+|||++|||||||+|++++..+.....+ +++.+.....+.+
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~ 75 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW 75 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe
Confidence 3458999999999999999999999888755444 4555555444443
No 330
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.82 E-value=9.6e-06 Score=72.59 Aligned_cols=40 Identities=25% Similarity=0.416 Sum_probs=24.2
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~ 147 (452)
.++|+++|++|||||||+|+|+++.|...+.++.|..+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~ 62 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTL 62 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeE
Confidence 4799999999999999999999998776666666554443
No 331
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.81 E-value=1.5e-05 Score=71.55 Aligned_cols=38 Identities=34% Similarity=0.585 Sum_probs=33.7
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
.+||++||++|||||||+++|++..|...+.+|++..+
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 45 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY 45 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce
Confidence 48999999999999999999999999888888876544
No 332
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.81 E-value=1.7e-05 Score=68.93 Aligned_cols=39 Identities=33% Similarity=0.531 Sum_probs=34.2
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
.+||+++|++|||||||+|+|+++.|...+.++++..+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~ 41 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR 41 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE
Confidence 479999999999999999999999998788888875553
No 333
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.79 E-value=1.9e-05 Score=71.19 Aligned_cols=40 Identities=23% Similarity=0.561 Sum_probs=34.8
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
...+||+|+|++|||||||+++|+++.|...+.+|.+..+
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 51 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY 51 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE
Confidence 3458999999999999999999999999888888876554
No 334
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.79 E-value=1.9e-05 Score=68.15 Aligned_cols=38 Identities=29% Similarity=0.581 Sum_probs=33.1
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
.+||+++|++|||||||+++|+++.|...+.++++..+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~ 40 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY 40 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE
Confidence 47999999999999999999999999877888876443
No 335
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.78 E-value=1.6e-05 Score=72.88 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.8
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccC
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKF 133 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~ 133 (452)
.++|+|+|.+|||||||+|+|+++.+
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~ 54 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKR 54 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 37999999999999999999999874
No 336
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.78 E-value=1.8e-05 Score=70.61 Aligned_cols=39 Identities=33% Similarity=0.641 Sum_probs=33.1
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
..+||+++|++|||||||+++|+++.+...+.+|.+..+
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 58 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY 58 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE
Confidence 348999999999999999999999988877777775444
No 337
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.77 E-value=2.3e-05 Score=67.75 Aligned_cols=39 Identities=23% Similarity=0.592 Sum_probs=34.2
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
.+||+++|++|||||||+++|+++.|...+.+|.+..+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~ 42 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR 42 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE
Confidence 489999999999999999999999988788888766553
No 338
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.77 E-value=3.3e-05 Score=75.39 Aligned_cols=77 Identities=16% Similarity=0.056 Sum_probs=48.4
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeecc-ccCCCCCCCCCCCCC------------------
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHK-KYGGRPYGTFSPIQT------------------ 168 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------------ 168 (452)
-.|+|+|++|||||||+|+|++.++. ....+..+++......... .+.....++.+....
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l 90 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL 90 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHh
Confidence 47999999999999999999999987 3334444444333333333 333333444443221
Q ss_pred -CceeEEEEcCCCCCchh
Q psy14768 169 -PSYLILITGDSTVGKTS 185 (452)
Q Consensus 169 -~~~~Il~vgD~~vGkTs 185 (452)
....++||.|...+.+.
T Consensus 91 ~~aD~il~VvD~~~~~~~ 108 (308)
T 3iev_A 91 EEADVILFMIDATEGWRP 108 (308)
T ss_dssp HHCSEEEEEEETTTBSCH
T ss_pred hcCCEEEEEEeCCCCCCc
Confidence 22368888888877654
No 339
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.73 E-value=1.9e-05 Score=83.02 Aligned_cols=43 Identities=30% Similarity=0.454 Sum_probs=28.6
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceee
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~ 148 (452)
...+||++||++|||||||+++|++..|...+.+|+|.++..+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~ 81 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTK 81 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEe
Confidence 3458999999999999999999999999988999999988755
No 340
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.72 E-value=1.6e-05 Score=75.33 Aligned_cols=42 Identities=26% Similarity=0.444 Sum_probs=34.7
Q ss_pred ccEEEEEEEcCC---------CCchHHHHHHHhh---ccCCCCCcCcc-ccCcee
Q psy14768 106 ETVLKILVIGDS---------TVGKTSYVQGFVQ---NKFLDNYKNTV-GVDFST 147 (452)
Q Consensus 106 ~~~~kv~ivG~~---------~vGKs~l~~r~~~---~~~~~~~~~~~-~~~~~~ 147 (452)
...+||+|||++ |||||||++||++ ..|...+.+|+ |.+|..
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~ 71 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGG 71 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTS
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccce
Confidence 345899999999 9999999999999 56666777775 777754
No 341
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.70 E-value=1.3e-05 Score=78.19 Aligned_cols=42 Identities=26% Similarity=0.233 Sum_probs=34.0
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCC---CCCcCccccCceeee
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFL---DNYKNTVGVDFSTKL 149 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~---~~~~~~~~~~~~~~~ 149 (452)
.+||+++|++|||||||+++|+++... ..+.+|++.++....
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~ 47 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLR 47 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEE
Confidence 379999999999999999999987433 357788887776544
No 342
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.67 E-value=2.9e-05 Score=70.49 Aligned_cols=37 Identities=35% Similarity=0.547 Sum_probs=32.1
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccC
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD 144 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~ 144 (452)
.+||+++|++|||||||++||+++.|...+.+|++..
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~ 66 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN 66 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecce
Confidence 4899999999999999999999999988888887543
No 343
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.67 E-value=8.1e-06 Score=84.64 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=40.9
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCC
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFS 164 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (452)
++|+|||+||||||||+|+|++..++ ....++.++|+....+........+.|+.+
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG 300 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAG 300 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSC
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCC
Confidence 79999999999999999999998765 566677777776666555444333334333
No 344
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.65 E-value=2.1e-05 Score=71.64 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=31.2
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~ 147 (452)
..+||++||++|||||||+++|++..|...+. +++.++..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~~~~~~ 45 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAI 45 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccC-CcceeeEE
Confidence 34799999999999999999999999886665 44444443
No 345
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.65 E-value=4.4e-05 Score=67.56 Aligned_cols=35 Identities=34% Similarity=0.665 Sum_probs=31.5
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccc
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~ 142 (452)
.+||+++|++|||||||+|+|+++.+...+.+|.+
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~ 38 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE 38 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch
Confidence 48999999999999999999999998877777764
No 346
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.82 E-value=6.8e-06 Score=74.50 Aligned_cols=40 Identities=35% Similarity=0.567 Sum_probs=34.4
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
..+||+++|++|||||||+++|+++.|...+.+|++..+.
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 68 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS 68 (204)
Confidence 3489999999999999999999999998888888765553
No 347
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.64 E-value=3.3e-05 Score=73.60 Aligned_cols=85 Identities=11% Similarity=-0.005 Sum_probs=60.3
Q ss_pred hhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEE
Q psy14768 308 MSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWI 387 (452)
Q Consensus 308 ~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~ 387 (452)
.....++++|++|+|+|+.++.+..+... . . . ++|.++|+||+|+.+.. ..+...++.+..++. +
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~l-----~-l----l--~k~~iivlNK~DL~~~~-~~~~~~~~~~~~g~~-v- 78 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAYGV-----D-F----S--RKETIILLNKVDIADEK-TTKKWVEFFKKQGKR-V- 78 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCTTS-----C-C----T--TSEEEEEEECGGGSCHH-HHHHHHHHHHHTTCC-E-
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcChHH-----H-h----c--CCCcEEEEECccCCCHH-HHHHHHHHHHHcCCe-E-
Confidence 34567899999999999999876643210 1 1 0 48999999999997521 122233444555666 6
Q ss_pred EecCCCCccHHHHHHHHHHH
Q psy14768 388 EVSSKEHLMIEDSMNFLVDR 407 (452)
Q Consensus 388 evSAktg~nv~~lf~~i~~~ 407 (452)
++||+++.|++++++.+...
T Consensus 79 ~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 79 ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp EECCTTSCHHHHHHHHCCCT
T ss_pred EEECCCCcCHHHHHHHHHHh
Confidence 99999999999998877543
No 348
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.64 E-value=4e-05 Score=65.90 Aligned_cols=38 Identities=29% Similarity=0.563 Sum_probs=32.6
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
.+||+++|++|||||||+++|.++.+...+.++++..+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~ 40 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY 40 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE
Confidence 37999999999999999999999998877777775443
No 349
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.63 E-value=3.1e-05 Score=70.89 Aligned_cols=39 Identities=31% Similarity=0.540 Sum_probs=27.9
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
..+||++||++|||||||+++|+++.|...+.+|++..+
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~ 71 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY 71 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE
Confidence 358999999999999999999999998877888875544
No 350
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.62 E-value=3.9e-05 Score=68.51 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=26.0
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCC---CCcCccccCc
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLD---NYKNTVGVDF 145 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~---~~~~~~~~~~ 145 (452)
.++|+++|.+|||||||+++|++..+.. .+.++++.++
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~ 88 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY 88 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSSCC------------CC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee
Confidence 4799999999999999999999988763 4556665554
No 351
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.61 E-value=2.7e-05 Score=76.76 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=32.7
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~ 147 (452)
..+||+|||++|||||||+++|++..|.. ..+|++.++..
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~-~~pT~~~~~~~ 203 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET 203 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEE-EEEETTEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCC-cccccceEEEE
Confidence 34799999999999999999999988863 34677766544
No 352
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.53 E-value=3.9e-05 Score=66.48 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=23.7
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
.+||+++|++|||||||+++|.+..+. ...++.|..+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~ 38 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY 38 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce
Confidence 479999999999999999999977665 3344554444
No 353
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.52 E-value=7.7e-05 Score=76.21 Aligned_cols=81 Identities=15% Similarity=0.083 Sum_probs=47.2
Q ss_pred eeEEEEEEecCCcchhh-----hhh-hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCC-c-EEEEEEC
Q psy14768 290 RPVKLQIWDIAGQDRYI-----CMS-RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML-P-CLLLASK 361 (452)
Q Consensus 290 ~~~~l~l~DtaG~e~~~-----~~~-~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~-p-iilV~NK 361 (452)
..+.+.|+||+|..... .+. ...+..+|.+++|+|++.+. +.......+.. .. | ..+|+||
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~--------~~~~i~gvVlnK 247 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFKE--------AVGEIGSIIVTK 247 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHHT--------TSCSCEEEEEEC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHhh--------cccCCeEEEEeC
Confidence 34678899999965321 111 11233689999999998654 22222222322 25 5 7899999
Q ss_pred CCCCCCcccHHHHHHHHHHcCCC
Q psy14768 362 CDLPDRQVEINEIEAVCHQYNFM 384 (452)
Q Consensus 362 ~Dl~~~~~~~e~~~~~~~~~~~~ 384 (452)
+|...+ ...+..+....+.+
T Consensus 248 ~D~~~~---~g~~l~~~~~~~~p 267 (432)
T 2v3c_C 248 LDGSAK---GGGALSAVAETKAP 267 (432)
T ss_dssp SSSCST---THHHHHHHHHSSCC
T ss_pred CCCccc---hHHHHHHHHHHCCC
Confidence 997531 12234456666554
No 354
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.52 E-value=5.5e-05 Score=69.09 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=32.2
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCC---CCcCccccCc
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLD---NYKNTVGVDF 145 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~---~~~~~~~~~~ 145 (452)
..++|+++|++|||||||+++|++..|.. .+.++++.++
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~ 52 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY 52 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe
Confidence 34799999999999999999999988764 4667766555
No 355
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.51 E-value=9.9e-05 Score=71.70 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=24.6
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFL 134 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~ 134 (452)
..+|+|||++|||||||+|++++.+++
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~ 34 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKIS 34 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcc
Confidence 357999999999999999999998875
No 356
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.46 E-value=5.3e-05 Score=73.82 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=60.8
Q ss_pred hhhhhhhcCCCEEEEEEeCCChhh-HHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcc---cHHHHHHHHHHcC
Q psy14768 307 CMSRVYYQNSDGCIIMFDLTNRKS-FESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQV---EINEIEAVCHQYN 382 (452)
Q Consensus 307 ~~~~~~i~~ad~vIlV~D~t~~~S-~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~---~~e~~~~~~~~~~ 382 (452)
.+....+.++|.+++|+|+.++.. ...+..++...+. .++|.+||+||+||.+... ..+...++.+..+
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~-------~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g 150 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA-------NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG 150 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT-------TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC
Confidence 334457899999999999997654 4444555544443 3589999999999986321 1233444445567
Q ss_pred CCEEEEecCCCCccHHHHHHH
Q psy14768 383 FMSWIEVSSKEHLMIEDSMNF 403 (452)
Q Consensus 383 ~~~~~evSAktg~nv~~lf~~ 403 (452)
+. .+++||+++.++++++..
T Consensus 151 ~~-v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 151 YD-VYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp CC-EEECCHHHHTTCTTTGGG
T ss_pred Ce-EEEEecCCCCCHHHHHhh
Confidence 75 899999998887766543
No 357
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.41 E-value=5e-05 Score=80.36 Aligned_cols=96 Identities=14% Similarity=0.032 Sum_probs=53.8
Q ss_pred CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEE--EEEEeeecCCeeEEEEEEecCCcchhhh------hh
Q psy14768 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST--KLLSHKKYGGRPVKLQIWDIAGQDRYIC------MS 309 (452)
Q Consensus 238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~--~~i~~~~~~~~~~~l~l~DtaG~e~~~~------~~ 309 (452)
.....|+|+|.||+|||||+|++++.........++ .+... ..+..+........+.|+||+|...... ..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt-~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~ 114 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTV-QSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSW 114 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSS-SCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCC-CCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHH
Confidence 345789999999999999999999865322222222 11111 1111100012345678999999653221 11
Q ss_pred hhhhc--CCCEEEEEEeCCChhhHHHHHH
Q psy14768 310 RVYYQ--NSDGCIIMFDLTNRKSFESVVQ 336 (452)
Q Consensus 310 ~~~i~--~ad~vIlV~D~t~~~S~~~~~~ 336 (452)
...+. -++ ++|||++...+.+++..
T Consensus 115 ~fala~llss--~lv~n~~~~i~~~dl~~ 141 (592)
T 1f5n_A 115 IFALAVLLSS--TFVYNSIGTINQQAMDQ 141 (592)
T ss_dssp HHHHHHHHCS--EEEEEEESCSSHHHHHT
T ss_pred HHHHHHHhcC--eEEEECCCCccHHHHHH
Confidence 00011 133 67788887777777654
No 358
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.40 E-value=2.2e-05 Score=75.66 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=34.2
Q ss_pred CcccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e 303 (452)
..++++++|.||||||||+|++.+.. ......++++.+... +.. +. .+.+|||||..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~---~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV---GK---ELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE---TT---TEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEe---CC---CEEEEECcCcC
Confidence 45789999999999999999999855 445555555544432 111 22 47799999964
No 359
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.39 E-value=9.1e-05 Score=75.59 Aligned_cols=90 Identities=13% Similarity=0.012 Sum_probs=54.2
Q ss_pred EEEEEEecCCcchhh-----hhhh-hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768 292 VKLQIWDIAGQDRYI-----CMSR-VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365 (452)
Q Consensus 292 ~~l~l~DtaG~e~~~-----~~~~-~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~ 365 (452)
+.+.|+||+|..... .+.. .....+|.++||+|++.+... ......+... -.+..||+||+|..
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~-------~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA-------TPIGSIIVTKLDGS 252 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS-------CTTEEEEEECCSSC
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh-------CCCeEEEEECCCCc
Confidence 678899999953211 1111 123468999999999875432 2222344433 14567899999976
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 366 DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 366 ~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
. ....+..+....+.+ +.+++. |+++
T Consensus 253 ~---~gG~~ls~~~~~g~P-I~fig~--Ge~v 278 (443)
T 3dm5_A 253 A---KGGGALSAVAATGAP-IKFIGT--GEKI 278 (443)
T ss_dssp S---SHHHHHHHHHTTCCC-EEEEEC--SSST
T ss_pred c---cccHHHHHHHHHCCC-EEEEEc--CCCh
Confidence 4 233345556666766 777775 5544
No 360
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.39 E-value=5.8e-05 Score=69.38 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=31.9
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
.++|+|+|++|||||||+++|+...|...+.++++.++
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~ 75 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDV 75 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEET
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCC
Confidence 37999999999999999999999887766667776554
No 361
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.38 E-value=0.00012 Score=69.49 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=36.4
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCC
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFS 164 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (452)
.++|++||.+|||||||+|+|+++.+. ....++.+.+.....+.+......+.|+.+
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG 93 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPG 93 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCC
Confidence 489999999999999999999998864 233333344444444444433333444444
No 362
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.36 E-value=5.6e-05 Score=78.42 Aligned_cols=76 Identities=13% Similarity=0.165 Sum_probs=48.2
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccC-------------------------------CCCCcCccccCceeeeeecccc
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKF-------------------------------LDNYKNTVGVDFSTKLLSHKKY 155 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (452)
..+||++||.+|||||||++||++... ..+...+++++.....+....+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 458999999999999999999986521 1222334555555555555555
Q ss_pred CCCCCCCCCCCC---------CCceeEEEEcCCCCC
Q psy14768 156 GGRPYGTFSPIQ---------TPSYLILITGDSTVG 182 (452)
Q Consensus 156 ~~~~~~~~~~~~---------~~~~~Il~vgD~~vG 182 (452)
...+.|+.+... .....+++|.|...|
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g 147 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN 147 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC-
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCC
Confidence 555555555421 233478999999887
No 363
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.35 E-value=0.00016 Score=74.10 Aligned_cols=78 Identities=10% Similarity=0.078 Sum_probs=51.9
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhcc-------------------------------CCCCCcCccccCceeeeeecccc
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNK-------------------------------FLDNYKNTVGVDFSTKLLSHKKY 155 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (452)
..++|+++|.+|+|||||++||++.. +..+...+++++.....+....+
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 45899999999999999999996532 11223355666666666655555
Q ss_pred CCCCCCCCCCC---------CCCceeEEEEcCCCCCch
Q psy14768 156 GGRPYGTFSPI---------QTPSYLILITGDSTVGKT 184 (452)
Q Consensus 156 ~~~~~~~~~~~---------~~~~~~Il~vgD~~vGkT 184 (452)
...+.|+.+.. ......+++|+|+..|..
T Consensus 96 ~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~ 133 (439)
T 3j2k_7 96 HFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 133 (439)
T ss_pred EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCcc
Confidence 55555555432 123457899999988853
No 364
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.34 E-value=0.00023 Score=63.21 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=28.9
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
.+||+++|++|||||||+|+|++..+. .+.++.|...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~ 59 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTR 59 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCcc
Confidence 479999999999999999999998854 3444544433
No 365
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.25 E-value=0.00014 Score=72.44 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=22.8
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFL 134 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~ 134 (452)
++|+|||.||||||||||++++..+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~ 28 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIE 28 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCc
Confidence 68999999999999999999998754
No 366
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.21 E-value=0.00024 Score=67.67 Aligned_cols=27 Identities=37% Similarity=0.636 Sum_probs=24.9
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFL 134 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~ 134 (452)
.++|++||.+|||||||+|+|++..+.
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~ 65 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVV 65 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcc
Confidence 489999999999999999999998874
No 367
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.21 E-value=0.0003 Score=68.18 Aligned_cols=93 Identities=10% Similarity=0.051 Sum_probs=57.3
Q ss_pred eeEEEEEEecCCcch--hh-hhhh-----hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEE
Q psy14768 290 RPVKLQIWDIAGQDR--YI-CMSR-----VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLAS 360 (452)
Q Consensus 290 ~~~~l~l~DtaG~e~--~~-~~~~-----~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~N 360 (452)
..+.+.|+||||... .. .+.. .....+|.+++|+|++... +.......+... .+ ..+|.|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~~--------~~i~gvVln 247 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQA--------SKIGTIIIT 247 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHHT--------CTTEEEEEE
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHhh--------CCCCEEEEe
Confidence 346789999999765 21 1221 1345799999999987542 222222223222 55 678999
Q ss_pred CCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399 (452)
Q Consensus 361 K~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~ 399 (452)
|+|... ....+..+....+.+ +.+++ +|+++++
T Consensus 248 k~D~~~---~~g~~~~~~~~~~~p-i~~i~--~Ge~v~d 280 (297)
T 1j8m_F 248 KMDGTA---KGGGALSAVAATGAT-IKFIG--TGEKIDE 280 (297)
T ss_dssp CGGGCT---THHHHHHHHHTTTCC-EEEEE--CSSSTTC
T ss_pred CCCCCc---chHHHHHHHHHHCcC-EEEEe--CCCChhh
Confidence 999753 233455677777766 77776 5666654
No 368
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.21 E-value=0.00023 Score=69.14 Aligned_cols=38 Identities=34% Similarity=0.593 Sum_probs=33.9
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~ 145 (452)
.+||+++|++|||||||+++|+++.|...+.+|++..+
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~ 192 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY 192 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee
Confidence 48999999999999999999999999888888886554
No 369
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.20 E-value=0.0011 Score=65.84 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=56.4
Q ss_pred hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHH---HHHcCCCEEE
Q psy14768 311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAV---CHQYNFMSWI 387 (452)
Q Consensus 311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~---~~~~~~~~~~ 387 (452)
..+.++|.+++|....-..+...+..++...+.. ++|.+||+||+||.+... .+..++| ....|+. .+
T Consensus 126 ~i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~-------~~~~iivlNK~DL~~~~~-~~~~~~~~~~y~~~G~~-v~ 196 (358)
T 2rcn_A 126 PIAANIDQIVIVSAILPELSLNIIDRYLVGCETL-------QVEPLIVLNKIDLLDDEG-MDFVNEQMDIYRNIGYR-VL 196 (358)
T ss_dssp EEEECCCEEEEEEESTTTCCHHHHHHHHHHHHHH-------TCEEEEEEECGGGCCHHH-HHHHHHHHHHHHTTTCC-EE
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc-------CCCEEEEEECccCCCchh-HHHHHHHHHHHHhCCCc-EE
Confidence 3478999999886654223455555555544433 378899999999986221 1223333 3456776 89
Q ss_pred EecCCCCccHHHHHHH
Q psy14768 388 EVSSKEHLMIEDSMNF 403 (452)
Q Consensus 388 evSAktg~nv~~lf~~ 403 (452)
++||+++.+++++...
T Consensus 197 ~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 197 MVSSHTQDGLKPLEEA 212 (358)
T ss_dssp ECBTTTTBTHHHHHHH
T ss_pred EEecCCCcCHHHHHHh
Confidence 9999999999988764
No 370
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.20 E-value=3.3e-05 Score=73.65 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=34.7
Q ss_pred ccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR 304 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~ 304 (452)
++++++|.+|+|||||+|++.+.... ....++++.... .+.. + ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~---~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSL---E---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEEC---T---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEe---C---CCEEEEECCCccc
Confidence 69999999999999999999986542 333333333322 1221 2 2477999999764
No 371
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.20 E-value=0.00011 Score=77.00 Aligned_cols=78 Identities=10% Similarity=0.063 Sum_probs=54.3
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec-cccCCCCCCCCCCC---------CCCceeEEEEcC
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH-KKYGGRPYGTFSPI---------QTPSYLILITGD 178 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~Il~vgD 178 (452)
++|+++|.+|||||||+++|++..+...+.++++.++....+.. ........++.+.. ......+++|.|
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVD 84 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVA 84 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECB
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEE
Confidence 58999999999999999999998888667778877776655544 22233333333321 222346889999
Q ss_pred CCCCchhh
Q psy14768 179 STVGKTSY 186 (452)
Q Consensus 179 ~~vGkTsl 186 (452)
...|....
T Consensus 85 a~dg~~~q 92 (537)
T 3izy_P 85 ADDGVMKQ 92 (537)
T ss_dssp SSSCCCHH
T ss_pred CCCCccHH
Confidence 98887643
No 372
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.16 E-value=0.00018 Score=70.49 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=32.3
Q ss_pred EEEEEcCCCCchHHHHHHHhhccCCC---CCcCccccCcee
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNKFLD---NYKNTVGVDFST 147 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~~~~---~~~~~~~~~~~~ 147 (452)
||+++|++|||||||++||.++.+.. .+.+|+|+++..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~ 41 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH 41 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE
Confidence 68999999999999999998776653 378999999864
No 373
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.00021 Score=76.20 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=23.7
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccC
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKF 133 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~ 133 (452)
..++|+|||.+|||||||++||++...
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~ 192 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLN 192 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSS
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcC
Confidence 358999999999999999999987644
No 374
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.15 E-value=0.00019 Score=64.96 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=23.0
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
.+|+|||++|||||||+|++++..|...+.++.|..+.
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 68999999999999999999988765555666665543
No 375
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.14 E-value=0.00018 Score=71.84 Aligned_cols=42 Identities=17% Similarity=0.099 Sum_probs=25.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 151 (452)
.|+|||.+|||||||+|++++..+.....+..++|+....+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~ 222 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIP 222 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEE
Confidence 499999999999999999999877544444444455444433
No 376
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.12 E-value=0.00018 Score=73.33 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=27.6
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeec
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSH 152 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~ 152 (452)
..++|+|+|+.|||||||+|+|++..+. ....++.+.+...+.+..
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~ 79 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMEL 79 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEE
Confidence 3489999999999999999999998885 445555566655555443
No 377
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.10 E-value=0.00049 Score=69.47 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccC
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKF 133 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~ 133 (452)
+||+|||.||||||||||++++...
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~ 25 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDV 25 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Confidence 4899999999999999999998874
No 378
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.03 E-value=0.0004 Score=68.96 Aligned_cols=27 Identities=19% Similarity=0.425 Sum_probs=24.1
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFL 134 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~ 134 (452)
.++|++||.+|||||||+|++++..+.
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~ 193 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPE 193 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 368999999999999999999987754
No 379
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.01 E-value=0.0003 Score=67.53 Aligned_cols=28 Identities=36% Similarity=0.670 Sum_probs=25.5
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFL 134 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~ 134 (452)
..++|+|||++|||||||+|+|++..|.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 3479999999999999999999998885
No 380
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.78 E-value=0.00039 Score=73.92 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=22.4
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhh
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQ 130 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~ 130 (452)
...++|+|||.+|||||||++||++
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~ 199 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMF 199 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHH
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHH
Confidence 4468999999999999999999964
No 381
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.78 E-value=0.00061 Score=68.54 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~ 146 (452)
++|+|||.||||||||||++++..+.....++.++++.
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~ 60 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPN 60 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC-------------CCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCce
Confidence 68999999999999999999998765444444444433
No 382
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.73 E-value=0.00018 Score=73.40 Aligned_cols=91 Identities=12% Similarity=0.032 Sum_probs=54.8
Q ss_pred eEEEEEEecCCcch--hh-----hhhh-hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECC
Q psy14768 291 PVKLQIWDIAGQDR--YI-----CMSR-VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362 (452)
Q Consensus 291 ~~~l~l~DtaG~e~--~~-----~~~~-~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~ 362 (452)
.+.+.|+||+|... .. .+.. ...-..|.++||+|+..... .......+.... .+..||+||+
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~---a~~~a~~f~~~~-------~~~gVIlTKl 248 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK---AYDLASRFHQAS-------PIGSVIITKM 248 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---GHHHHHHHHHHC-------SSEEEEEECG
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH---HHHHHHHHhccc-------CCcEEEEecc
Confidence 56788999999533 11 1111 11235699999999987533 222334444331 4578899999
Q ss_pred CCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMI 397 (452)
Q Consensus 363 Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv 397 (452)
|... ....+..+....+.+ +.+++. |+++
T Consensus 249 D~~a---~~G~als~~~~~g~P-i~fig~--Ge~v 277 (433)
T 3kl4_A 249 DGTA---KGGGALSAVVATGAT-IKFIGT--GEKI 277 (433)
T ss_dssp GGCS---CHHHHHHHHHHHTCE-EEEEEC--CSSS
T ss_pred cccc---cchHHHHHHHHHCCC-EEEEEC--CCCh
Confidence 9753 334455566666765 778885 5544
No 383
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=96.70 E-value=0.0012 Score=68.42 Aligned_cols=78 Identities=15% Similarity=0.162 Sum_probs=43.8
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhcc-------CCCCCcCccccCceeeeeeccccCCCCCCCCCCC---------CCCc
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNK-------FLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPI---------QTPS 170 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 170 (452)
..++|+++|..++|||||++++++.. +..+...+++++.....+....+.....|+.+.. ....
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~a 97 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII 97 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhC
Confidence 45899999999999999999999876 3344444454444333333333333344444321 1233
Q ss_pred eeEEEEcCCCCCch
Q psy14768 171 YLILITGDSTVGKT 184 (452)
Q Consensus 171 ~~Il~vgD~~vGkT 184 (452)
..+++|.|+..|..
T Consensus 98 D~~ilVvda~~g~~ 111 (482)
T 1wb1_A 98 DLALIVVDAKEGPK 111 (482)
T ss_dssp CEEEEEEETTTCSC
T ss_pred CEEEEEEecCCCcc
Confidence 57889999888764
No 384
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.63 E-value=0.001 Score=65.85 Aligned_cols=28 Identities=36% Similarity=0.670 Sum_probs=25.4
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFL 134 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~ 134 (452)
..++|+|||++|||||||+|+|++..|.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 3479999999999999999999998885
No 385
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.59 E-value=0.00066 Score=67.60 Aligned_cols=31 Identities=16% Similarity=0.480 Sum_probs=22.3
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhh-ccCCCCC
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQ-NKFLDNY 137 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~-~~~~~~~ 137 (452)
..++|+|||++|||||||+|++++ ..|...+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC-----
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 458999999999999999999655 4444333
No 386
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.50 E-value=0.0015 Score=67.70 Aligned_cols=76 Identities=11% Similarity=0.057 Sum_probs=48.1
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeeccccCCCCCCCCCCC---------CCCceeEEEEcCC
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPI---------QTPSYLILITGDS 179 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~Il~vgD~ 179 (452)
.+|+++|.+++|||||+++|.+..+......+++.+.....+.+........|+.+.. ......+++|.|.
T Consensus 5 ~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda 84 (501)
T 1zo1_I 5 PVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAA 84 (501)
T ss_dssp CCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEET
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeec
Confidence 5799999999999999999998877655555555554444444333333333333321 1222357888888
Q ss_pred CCCch
Q psy14768 180 TVGKT 184 (452)
Q Consensus 180 ~vGkT 184 (452)
..|..
T Consensus 85 ~~g~~ 89 (501)
T 1zo1_I 85 DDGVM 89 (501)
T ss_dssp TTBSC
T ss_pred ccCcc
Confidence 77654
No 387
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.47 E-value=0.0013 Score=63.70 Aligned_cols=27 Identities=30% Similarity=0.600 Sum_probs=24.7
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccC
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKF 133 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~ 133 (452)
..++|+|||++|||||||+|++++..+
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 357899999999999999999999887
No 388
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.39 E-value=0.0015 Score=59.51 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=23.6
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFL 134 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~ 134 (452)
..+|+++|.+|||||||+++|+...+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 368999999999999999999987543
No 389
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=96.39 E-value=0.00085 Score=69.03 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=22.7
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhc
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
..++|+++|.+|+|||||+++|++.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3589999999999999999999875
No 390
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.38 E-value=0.0021 Score=65.55 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=44.1
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhc--cCCC-----------------------------CCcCccccCceeeeeecccc
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQN--KFLD-----------------------------NYKNTVGVDFSTKLLSHKKY 155 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 155 (452)
..++|+++|.+|+|||||++||++. .+.. +...+++++.....+.+..+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 3589999999999999999999875 2321 11233444444444455444
Q ss_pred CCCCCCCCCCCC---------CCceeEEEEcCCCCC
Q psy14768 156 GGRPYGTFSPIQ---------TPSYLILITGDSTVG 182 (452)
Q Consensus 156 ~~~~~~~~~~~~---------~~~~~Il~vgD~~vG 182 (452)
...+.++.+... .....+++|.|...|
T Consensus 85 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~g 120 (435)
T 1jny_A 85 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKG 120 (435)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTT
T ss_pred EEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCC
Confidence 445555554432 233478889998877
No 391
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.38 E-value=0.0028 Score=63.66 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=29.1
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccC-CCCCcCccccCce
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFS 146 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~-~~~~~~~~~~~~~ 146 (452)
.+|.|||.||||||||||.+++..+ .....|+.+++..
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~ 59 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE 59 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce
Confidence 6899999999999999999999876 3444444444443
No 392
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.35 E-value=0.00019 Score=74.07 Aligned_cols=101 Identities=13% Similarity=0.037 Sum_probs=61.1
Q ss_pred CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch--hhhhh-------
Q psy14768 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR--YICMS------- 309 (452)
Q Consensus 239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~--~~~~~------- 309 (452)
....|+++|.+|+||||+.++|...... ...++...+........ .+......+||..|++. +...+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~---~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~ 113 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDM---VKTYKSFEFFLPDNEEGLKIRKQCALAALND 113 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHH---HCSCCCGGGGCTTCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhh---ccCCCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999988753221 11122221111000000 11113345889999743 23332
Q ss_pred -hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhh
Q psy14768 310 -RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSK 344 (452)
Q Consensus 310 -~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~ 344 (452)
..++..+++.++|+|.++. +++....|...+...
T Consensus 114 ~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 114 VRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 4566678888999999987 666667777776654
No 393
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.30 E-value=0.0029 Score=64.52 Aligned_cols=26 Identities=19% Similarity=0.491 Sum_probs=23.4
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhcc
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNK 132 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~ 132 (452)
..++|+++|.+|+|||||++||++..
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhc
Confidence 45899999999999999999998764
No 394
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.26 E-value=0.0014 Score=68.61 Aligned_cols=81 Identities=16% Similarity=0.069 Sum_probs=49.8
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhcc------------------CC----CCCcCccccCceeeeeeccccCCCCCCCCC
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNK------------------FL----DNYKNTVGVDFSTKLLSHKKYGGRPYGTFS 164 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (452)
...+|+|||.+|||||||+++|+... +. .+...++++......+.+..+...+.++.+
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 45789999999999999999996211 11 011133444444444555555445555555
Q ss_pred CCC---------CCceeEEEEcCCCCCchhhh
Q psy14768 165 PIQ---------TPSYLILITGDSTVGKTSYV 187 (452)
Q Consensus 165 ~~~---------~~~~~Il~vgD~~vGkTsl~ 187 (452)
... .....+++|.|+..|.+...
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t 123 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRT 123 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHH
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHH
Confidence 432 22247899999988876443
No 395
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.26 E-value=0.0039 Score=61.82 Aligned_cols=35 Identities=29% Similarity=0.460 Sum_probs=28.0
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCcc
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~ 141 (452)
.+.+|+|||++|||||||+|+|++..|......++
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v 67 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence 34589999999999999999999988753333344
No 396
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.20 E-value=0.0025 Score=61.76 Aligned_cols=31 Identities=16% Similarity=0.465 Sum_probs=21.6
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhc-cCCCC
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQN-KFLDN 136 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~-~~~~~ 136 (452)
...++|+|||++|||||||++++.+. .+...
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~ 47 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPER 47 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC-------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCC
Confidence 34589999999999999999998775 55533
No 397
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.15 E-value=0.0033 Score=66.91 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.5
Q ss_pred ccEEEeeecccCCcceeeecccc
Q psy14768 241 YPILITGDSTVGKTSYVQGFVQN 263 (452)
Q Consensus 241 ~kI~ivG~~nvGKSSLin~l~~~ 263 (452)
..++|+|++|+|||||++.+.+-
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSC
T ss_pred CeEEEECCCCChHHHHHHHHhCC
Confidence 35999999999999999998874
No 398
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.13 E-value=0.0023 Score=62.82 Aligned_cols=92 Identities=11% Similarity=0.042 Sum_probs=53.9
Q ss_pred EEEEEEecCCcchhhh-hhhh-----hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768 292 VKLQIWDIAGQDRYIC-MSRV-----YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365 (452)
Q Consensus 292 ~~l~l~DtaG~e~~~~-~~~~-----~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~ 365 (452)
+.+.++||+|...... +... ..-..|-.++++|++.. +++......+.... ..-+|++||.|..
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---~~~~~~~~~~~~~~-------~it~iilTKlD~~ 281 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---NAIVEQARQFNEAV-------KIDGIILTKLDAD 281 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHS-------CCCEEEEECGGGC
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---HHHHHHHHHHHHhc-------CCCEEEEeCcCCc
Confidence 3466789999643221 1111 12247889999997765 34434444444331 2347889999964
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768 366 DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399 (452)
Q Consensus 366 ~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~ 399 (452)
. ..-.+..+....+.+ +.+++ +|+++++
T Consensus 282 a---~~G~~l~~~~~~~~p-i~~i~--~Ge~v~d 309 (328)
T 3e70_C 282 A---RGGAALSISYVIDAP-ILFVG--VGQGYDD 309 (328)
T ss_dssp S---CCHHHHHHHHHHTCC-EEEEE--CSSSTTC
T ss_pred c---chhHHHHHHHHHCCC-EEEEe--CCCCccc
Confidence 3 123345666677766 77777 6776643
No 399
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.13 E-value=0.0035 Score=63.25 Aligned_cols=79 Identities=10% Similarity=0.033 Sum_probs=46.8
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhc--------cCCCC---------CcCccccCceeeeeeccccCCCCCCCCCCCC--
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQN--------KFLDN---------YKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ-- 167 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 167 (452)
..++|+++|.+|+|||||+++|++. .|... ...+++++.....+.+......+.|+.+...
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 89 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI 89 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHH
Confidence 4589999999999999999999873 22210 1233344433333333333333444443321
Q ss_pred -------CCceeEEEEcCCCCCchh
Q psy14768 168 -------TPSYLILITGDSTVGKTS 185 (452)
Q Consensus 168 -------~~~~~Il~vgD~~vGkTs 185 (452)
.....+++|.|...|...
T Consensus 90 ~~~~~~~~~aD~~ilVvda~~g~~~ 114 (405)
T 2c78_A 90 KNMITGAAQMDGAILVVSAADGPMP 114 (405)
T ss_dssp HHHHHHHTTCSSEEEEEETTTCCCH
T ss_pred HHHHHHHHHCCEEEEEEECCCCCcH
Confidence 123468889998888654
No 400
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=96.11 E-value=0.0054 Score=63.11 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.9
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhh
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQ 130 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~ 130 (452)
..++|+++|..++|||||++||+.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CeeEEEEEECCCCCHHHHHHHHHH
Confidence 458999999999999999999975
No 401
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.09 E-value=0.0049 Score=62.50 Aligned_cols=29 Identities=17% Similarity=0.484 Sum_probs=25.6
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFL 134 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~ 134 (452)
.-.++|+|||++|||||||+|+|++..+.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~ 57 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLY 57 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 44589999999999999999999998774
No 402
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=95.94 E-value=0.003 Score=62.35 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.8
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKFL 134 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~~ 134 (452)
.+|+|||.+|||||||+|++++.++.
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~ 184 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPK 184 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCE
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCc
Confidence 36899999999999999999987654
No 403
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.89 E-value=0.0038 Score=62.21 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCchHHHHHHHhhcc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNK 132 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~ 132 (452)
++|+|||.||||||||||++++..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999999865
No 404
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=95.89 E-value=0.0069 Score=63.34 Aligned_cols=79 Identities=13% Similarity=0.056 Sum_probs=45.3
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhcc--CC---------------C-----CCcCccccCceeeeeeccccCCCCCCCCC
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNK--FL---------------D-----NYKNTVGVDFSTKLLSHKKYGGRPYGTFS 164 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~--~~---------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (452)
...+|+|+|.+|+|||||+++|+... +. . +...++++......+.+..+...+.++.+
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 45799999999999999999998631 10 0 01122233333333444444444445544
Q ss_pred CCC---------CCceeEEEEcCCCCCchh
Q psy14768 165 PIQ---------TPSYLILITGDSTVGKTS 185 (452)
Q Consensus 165 ~~~---------~~~~~Il~vgD~~vGkTs 185 (452)
... .....+++|.|+..|...
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~ 121 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVED 121 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCH
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchH
Confidence 432 223468899998887653
No 405
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=95.73 E-value=0.0068 Score=64.04 Aligned_cols=26 Identities=15% Similarity=0.292 Sum_probs=23.6
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccC
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKF 133 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~ 133 (452)
...|+|||.||||||||+|++++...
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCC
Confidence 47899999999999999999998764
No 406
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=95.73 E-value=0.0059 Score=60.88 Aligned_cols=66 Identities=14% Similarity=0.079 Sum_probs=41.1
Q ss_pred EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeeccccCCCCCCCCCCCC---------CCceeEEEEcCCC
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ---------TPSYLILITGDST 180 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~Il~vgD~~ 180 (452)
+|+++|.+|+|||||+++|+ +...|+ +.....+.+..+...+.|+.+... .....+++|+| .
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi--~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~ 93 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSS--DITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P 93 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEES--SSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEE--EeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C
Confidence 89999999999999999998 223333 333333444443344444444322 12346888888 7
Q ss_pred CCch
Q psy14768 181 VGKT 184 (452)
Q Consensus 181 vGkT 184 (452)
.|..
T Consensus 94 ~g~~ 97 (370)
T 2elf_A 94 QGLD 97 (370)
T ss_dssp TCCC
T ss_pred CCCc
Confidence 7764
No 407
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=95.73 E-value=0.0064 Score=65.74 Aligned_cols=27 Identities=30% Similarity=0.763 Sum_probs=24.7
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFL 134 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~ 134 (452)
.++|+|||++|||||||+|++++..+.
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~ 95 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLL 95 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 379999999999999999999998765
No 408
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=95.68 E-value=0.0072 Score=63.54 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=25.3
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQNKFL 134 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~ 134 (452)
..++|+|||.+|||||||+|++++..+.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~ 91 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVP 91 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccc
Confidence 3478999999999999999999998874
No 409
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=95.56 E-value=0.011 Score=63.94 Aligned_cols=81 Identities=10% Similarity=0.063 Sum_probs=46.6
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhh--ccCCC-----------CC-----cCccccCceeeeeeccccCCCCCCCCCCCC
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQ--NKFLD-----------NY-----KNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ 167 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~--~~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (452)
....+|+|||.+|+|||||+++++. ..+.. ++ ..++++......+.+..+...+.++.+...
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 4568999999999999999999985 22210 00 122222333333444444444555555432
Q ss_pred C---------CceeEEEEcCCCCCchhh
Q psy14768 168 T---------PSYLILITGDSTVGKTSY 186 (452)
Q Consensus 168 ~---------~~~~Il~vgD~~vGkTsl 186 (452)
. ....+++|.|...|.+..
T Consensus 88 f~~~~~~~l~~aD~~llVvDa~~g~~~~ 115 (693)
T 2xex_A 88 FTVEVERSLRVLDGAVTVLDAQSGVEPQ 115 (693)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTBSCHH
T ss_pred hHHHHHHHHHHCCEEEEEECCCCCCcHH
Confidence 1 123688999988887654
No 410
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=95.55 E-value=0.016 Score=59.05 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=20.5
Q ss_pred cccEEEeeecccCCcceeeeccc
Q psy14768 240 TYPILITGDSTVGKTSYVQGFVQ 262 (452)
Q Consensus 240 ~~kI~ivG~~nvGKSSLin~l~~ 262 (452)
..-|+|+|++++|||+|+|.+++
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHhh
Confidence 35688999999999999999985
No 411
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=95.50 E-value=0.0061 Score=61.33 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=22.1
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhc
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
.++|+++|.+++|||||+++|++.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhCh
Confidence 479999999999999999999874
No 412
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.44 E-value=0.0074 Score=59.67 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCchHHHHHHHhhc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
..|+|+|.||+|||||+|++++.
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
No 413
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=95.10 E-value=0.016 Score=62.58 Aligned_cols=79 Identities=13% Similarity=-0.048 Sum_probs=46.0
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccCCC--------------------CCcCccccCceeeeeeccccCCCCCCCCCC
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLD--------------------NYKNTVGVDFSTKLLSHKKYGGRPYGTFSP 165 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (452)
....+|+|||.+|+|||||+++|+...... +...|++ .....+.+..+...+.++.+.
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~--~~~~~~~~~~~~i~liDTPG~ 87 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITIT--AAVTTCFWKDHRINIIDTPGH 87 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------CCEEEEEETTEEEEEECCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccc--cceEEEEECCeEEEEEECcCc
Confidence 456899999999999999999998522110 1223333 333334444444445555554
Q ss_pred CCC---------CceeEEEEcCCCCCchhh
Q psy14768 166 IQT---------PSYLILITGDSTVGKTSY 186 (452)
Q Consensus 166 ~~~---------~~~~Il~vgD~~vGkTsl 186 (452)
..- ....+++|.|+..|.+.-
T Consensus 88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~ 117 (691)
T 1dar_A 88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQ 117 (691)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTTCSCHH
T ss_pred cchHHHHHHHHHHCCEEEEEEECCCCcchh
Confidence 321 123688888988876643
No 414
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=95.01 E-value=0.033 Score=59.00 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=24.2
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFL 134 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~ 134 (452)
.++|+|+|.+|+|||||+++|++..+.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~ 31 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVA 31 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCc
Confidence 368999999999999999999987665
No 415
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=94.96 E-value=0.016 Score=63.96 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=23.3
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhc
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
....+|+|||.+|||||||+++|+..
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHh
Confidence 45679999999999999999999874
No 416
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=94.86 E-value=0.02 Score=57.70 Aligned_cols=40 Identities=15% Similarity=0.365 Sum_probs=25.9
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhc---cCCCCCcC--ccccCce
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQN---KFLDNYKN--TVGVDFS 146 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~---~~~~~~~~--~~~~~~~ 146 (452)
..++|+++|..++|||||+++|++. ++..+..+ |++..|.
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~ 51 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYA 51 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEeccc
Confidence 3489999999999999999999853 44445555 4444443
No 417
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.72 E-value=0.012 Score=60.00 Aligned_cols=80 Identities=15% Similarity=0.090 Sum_probs=46.1
Q ss_pred eEEEEEEecCCcchhh-hhhh-----hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCC
Q psy14768 291 PVKLQIWDIAGQDRYI-CMSR-----VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCD 363 (452)
Q Consensus 291 ~~~l~l~DtaG~e~~~-~~~~-----~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~D 363 (452)
.+.+.|+||||.-.+. .+.. ..+..+|.+++|+|+..... .......+... .+ .-+|+||+|
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~~--------l~i~gvVlnK~D 251 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNEA--------LPLTGVVLTKVD 251 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHHH--------SCCCCEEEECTT
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhcc--------CCCeEEEEecCC
Confidence 4678999999964332 1211 22457899999999986532 22222333322 44 347899999
Q ss_pred CCCCcccHHHHHHHHHHcCCC
Q psy14768 364 LPDRQVEINEIEAVCHQYNFM 384 (452)
Q Consensus 364 l~~~~~~~e~~~~~~~~~~~~ 384 (452)
...+. ..+..+....+.+
T Consensus 252 ~~~~~---g~~l~i~~~~~~P 269 (433)
T 2xxa_A 252 GDARG---GAALSIRHITGKP 269 (433)
T ss_dssp SSSCC---THHHHHHHHHCCC
T ss_pred CCccH---HHHHHHHHHHCCC
Confidence 75321 2334555555543
No 418
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.67 E-value=0.016 Score=55.01 Aligned_cols=27 Identities=26% Similarity=0.536 Sum_probs=23.1
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFL 134 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~ 134 (452)
.|.++|||.+|+|||||+|.+++...+
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 378999999999999999999986543
No 419
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=94.66 E-value=0.02 Score=57.61 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=22.7
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhcc
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNK 132 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~ 132 (452)
.++|+++|.+|||||||+++|++..
T Consensus 8 ~~~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 8 EVNIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcc
Confidence 4799999999999999999999743
No 420
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=94.62 E-value=0.032 Score=56.14 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=26.6
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhc---cCCCCCcCcc
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQN---KFLDNYKNTV 141 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~---~~~~~~~~~~ 141 (452)
...++|+++|..++|||||+++|++. ++..+...++
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~gi 46 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGI 46 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCc
Confidence 34589999999999999999999854 3444555533
No 421
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.51 E-value=0.015 Score=60.03 Aligned_cols=139 Identities=17% Similarity=0.085 Sum_probs=0.0
Q ss_pred EEEeeecccCCcceeeeccc-cccccccCCcceeeeEE---------------EEEEeeecCC-----------------
Q psy14768 243 ILITGDSTVGKTSYVQGFVQ-NKFLDNYKNTVGVDFST---------------KLLSHKKYGG----------------- 289 (452)
Q Consensus 243 I~ivG~~nvGKSSLin~l~~-~~~~~~~~~t~~~d~~~---------------~~i~~~~~~~----------------- 289 (452)
++|+|.+|+|||||++.+.+ -........-.+.|... ..+.. ..
T Consensus 296 I~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~---Q~~~~~p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIA---QHTGADSASVIFDAIQAAK 372 (503)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEEC---CSTTCCHHHHHHHHHHHHH
T ss_pred EEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEe---cccCcCHHHHHHHHHHHHH
Q ss_pred -eeEEEEEEecCCcchhhhhhhhhhcC------------CCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEE
Q psy14768 290 -RPVKLQIWDIAGQDRYICMSRVYYQN------------SDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356 (452)
Q Consensus 290 -~~~~l~l~DtaG~e~~~~~~~~~i~~------------ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~pii 356 (452)
..+.+.|+||+|..........-+++ .+-++||+|++.+ ++.......+.... -...
T Consensus 373 ~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG---q~al~~ak~f~~~~-------~itg 442 (503)
T 2yhs_A 373 ARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG---QNAVSQAKLFHEAV-------GLTG 442 (503)
T ss_dssp HTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT---HHHHHHHHHHHHHT-------CCSE
T ss_pred hcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc---HHHHHHHHHHHhhc-------CCCE
Q ss_pred EEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHH
Q psy14768 357 LLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS 400 (452)
Q Consensus 357 lV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~l 400 (452)
+|+||.| .....-.+..+...++.. +.++. +|++++++
T Consensus 443 vIlTKLD---~takgG~~lsi~~~~~~P-I~fig--~Ge~vdDL 480 (503)
T 2yhs_A 443 ITLTKLD---GTAKGGVIFSVADQFGIP-IRYIG--VGERIEDL 480 (503)
T ss_dssp EEEECGG---GCSCCTHHHHHHHHHCCC-EEEEE--CSSSGGGE
T ss_pred EEEEcCC---CcccccHHHHHHHHHCCC-EEEEe--cCCChhhc
No 422
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=94.32 E-value=0.026 Score=63.71 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.7
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhc
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
..++|+++|.+++|||||+++|++.
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhh
Confidence 4589999999999999999999874
No 423
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.91 E-value=0.029 Score=49.76 Aligned_cols=23 Identities=39% Similarity=0.673 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhcc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNK 132 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~ 132 (452)
+++|+|.+|+|||||++.+++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
No 424
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.81 E-value=0.03 Score=49.37 Aligned_cols=22 Identities=14% Similarity=0.451 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
.++|+|.+|+|||||++.+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
No 425
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.74 E-value=0.056 Score=52.30 Aligned_cols=133 Identities=16% Similarity=0.056 Sum_probs=0.0
Q ss_pred EEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCC---------------------------------
Q psy14768 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG--------------------------------- 289 (452)
Q Consensus 243 I~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~--------------------------------- 289 (452)
++++|.+|+||||++..+. ......+.......... ..
T Consensus 107 i~ivG~~GsGKTTl~~~LA------~~l~~~g~kV~lv~~D~---~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~ 177 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLA------KMFVDEGKSVVLAAADT---FRAAAIEQLKIWGERVGATVISHSEGADPAAVAFD 177 (306)
T ss_dssp EEEECCTTSSHHHHHHHHH------HHHHHTTCCEEEEEECT---TCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHH------HHHHhcCCEEEEEcccc---ccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHH
Q ss_pred -------eeEEEEEEecCCcchhhhhhhhhhcC------------CCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCC
Q psy14768 290 -------RPVKLQIWDIAGQDRYICMSRVYYQN------------SDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNG 350 (452)
Q Consensus 290 -------~~~~l~l~DtaG~e~~~~~~~~~i~~------------ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~ 350 (452)
..+.+.|+||+|...........+.. .|.+++|+|++ ...+.+..........
T Consensus 178 al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~--t~~~~l~~a~~~~~~~------ 249 (306)
T 1vma_A 178 AVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT--TGQNGLVQAKIFKEAV------ 249 (306)
T ss_dssp HHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG--GHHHHHHHHHHHHHHS------
T ss_pred HHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC--CCHHHHHHHHHHHhcC------
Q ss_pred CCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHH
Q psy14768 351 AMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS 400 (452)
Q Consensus 351 ~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~l 400 (452)
...-+|+||.| .....-.+..+....+.+ +.+++ .|++++++
T Consensus 250 --~i~gvVlTk~D---~~~~gG~~l~~~~~~~~P-i~~i~--~Ge~~~dl 291 (306)
T 1vma_A 250 --NVTGIILTKLD---GTAKGGITLAIARELGIP-IKFIG--VGEKAEDL 291 (306)
T ss_dssp --CCCEEEEECGG---GCSCTTHHHHHHHHHCCC-EEEEE--CSSSGGGE
T ss_pred --CCCEEEEeCCC---CccchHHHHHHHHHHCCC-EEEEe--CCCChhhc
No 426
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.71 E-value=0.032 Score=56.50 Aligned_cols=27 Identities=26% Similarity=0.621 Sum_probs=23.2
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQNKFL 134 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~ 134 (452)
.+.++|||.+|+|||||+|.+++..+.
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~ 68 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFE 68 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-
T ss_pred eeEEEEECCCCCCHHHHHHHHhCcccc
Confidence 467999999999999999999987543
No 427
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=93.52 E-value=0.052 Score=58.28 Aligned_cols=29 Identities=3% Similarity=0.038 Sum_probs=24.9
Q ss_pred cCCCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768 381 YNFMSWIEVSSKEHLMIEDSMNFLVDRII 409 (452)
Q Consensus 381 ~~~~~~~evSAktg~nv~~lf~~i~~~i~ 409 (452)
..+.+++++||++|.||+++|+.+.+.+-
T Consensus 245 ~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp 273 (665)
T 2dy1_A 245 GLLYPVALASGEREIGVLPLLELILEALP 273 (665)
T ss_dssp TSCEEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCeeEEEEeecccCcCHHHHHHHHHHhCC
Confidence 34567999999999999999999988764
No 428
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.45 E-value=0.038 Score=49.98 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
.++|+|.+|+|||||++++++.
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4789999999999999999864
No 429
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=93.41 E-value=0.067 Score=57.82 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=22.1
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhh
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQ 130 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~ 130 (452)
....+|+|||..|+|||||+++|+.
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~ 32 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILF 32 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999975
No 430
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.19 E-value=0.043 Score=49.26 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
.++|||.+|+|||||++.+.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999863
No 431
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.18 E-value=0.047 Score=53.87 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCchHHHHHHHhhcc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNK 132 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~ 132 (452)
++|+|+|.||||||||++++....
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999997643
No 432
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.15 E-value=0.061 Score=51.76 Aligned_cols=124 Identities=13% Similarity=0.089 Sum_probs=0.0
Q ss_pred EEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCC---------------------------------
Q psy14768 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG--------------------------------- 289 (452)
Q Consensus 243 I~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~--------------------------------- 289 (452)
++++|.+|+||||++..+...-....-....-.+. +-
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~----------D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al 177 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT----------DTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAK 177 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC----------CCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec----------CcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHH
Q ss_pred ---eeEEEEEEecCCcchhhhhhhhhhc------CCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEE
Q psy14768 290 ---RPVKLQIWDIAGQDRYICMSRVYYQ------NSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360 (452)
Q Consensus 290 ---~~~~l~l~DtaG~e~~~~~~~~~i~------~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~N 360 (452)
..+.+.|+||+|........-..+. ..+.+++|+|++ ...+++..+...+... ...-+|.|
T Consensus 178 ~~~~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at--~~~~~~~~~~~~~~~l--------~~~giVlt 247 (296)
T 2px0_A 178 ELFSEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSAT--AKYEDMKHIVKRFSSV--------PVNQYIFT 247 (296)
T ss_dssp HHGGGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETT--BCHHHHHHHTTTTSSS--------CCCEEEEE
T ss_pred HHhcCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECC--CCHHHHHHHHHHHhcC--------CCCEEEEe
Q ss_pred CCCCCCCcccHHHHHHHHHHcCCCEEEEec
Q psy14768 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVS 390 (452)
Q Consensus 361 K~Dl~~~~~~~e~~~~~~~~~~~~~~~evS 390 (452)
|.| .......+..+....+.+ +.+++
T Consensus 248 k~D---~~~~~g~~~~~~~~~~~p-i~~i~ 273 (296)
T 2px0_A 248 KID---ETTSLGSVFNILAESKIG-VGFMT 273 (296)
T ss_dssp CTT---TCSCCHHHHHHHHTCSCC-CSEEC
T ss_pred CCC---cccchhHHHHHHHHHCcC-EEEEE
No 433
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.06 E-value=0.084 Score=49.06 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.2
Q ss_pred EEEEEEEcCCCCchHHHHHHHhhc
Q psy14768 108 VLKILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 108 ~~kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
...++++|.+|||||||++++...
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHH
Confidence 467999999999999999999843
No 434
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.02 E-value=0.046 Score=54.07 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhcc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNK 132 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~ 132 (452)
.++|+|.+|||||||+|.+.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58999999999999999998754
No 435
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=92.98 E-value=0.065 Score=56.70 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=20.9
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhc
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
....+|+|||..++|||||++||++.
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~ 29 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEY 29 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhc
Confidence 35678999999999999999999863
No 436
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=92.64 E-value=0.05 Score=59.10 Aligned_cols=28 Identities=32% Similarity=0.590 Sum_probs=25.3
Q ss_pred ccEEEEEEEcCCCCchHHHHHHHhhccC
Q psy14768 106 ETVLKILVIGDSTVGKTSYVQGFVQNKF 133 (452)
Q Consensus 106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~ 133 (452)
..+++|++||++|+|||||+|.+++..|
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 3457999999999999999999999877
No 437
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.40 E-value=0.06 Score=48.16 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=19.3
Q ss_pred EEEEcCCCCchHHHHHHHhhc
Q psy14768 111 ILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 111 v~ivG~~~vGKs~l~~r~~~~ 131 (452)
|+|+|.+||||+||+++++.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999864
No 438
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.37 E-value=0.066 Score=52.48 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCchHHHHHHHhhc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
..++|+|.+|+|||||++.+.+-
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999853
No 439
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=92.31 E-value=0.046 Score=57.91 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=18.3
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhc
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
...+|+|||..++|||||++||+..
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~ 27 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQI 27 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999863
No 440
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.30 E-value=0.067 Score=49.07 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhcc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNK 132 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~ 132 (452)
.++|+|.+|+|||||++.+.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 48899999999999999998753
No 441
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.09 E-value=0.03 Score=54.31 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhcc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNK 132 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~ 132 (452)
.++|+|.+|||||||+|.+.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 58999999999999999998643
No 442
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.04 E-value=0.26 Score=43.66 Aligned_cols=85 Identities=13% Similarity=-0.035 Sum_probs=55.5
Q ss_pred EEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccH
Q psy14768 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEI 371 (452)
Q Consensus 292 ~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~ 371 (452)
+.+.|+|+++.- .......+..+|.+|++...+... ..+..+...+..... .....++.+|+|++|... ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~--~~~~~~~~vv~N~~~~~~--~~~ 147 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQA--YSRKVEARFLITRKIEMA--TML 147 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSC--GGGCCEEEEEECSBCTTE--EEE
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHH--hCCCCcEEEEEeccCCCc--hHH
Confidence 457789999864 333455677899999999977544 677777777765411 134567799999998532 223
Q ss_pred HHHHHHHHHcCCC
Q psy14768 372 NEIEAVCHQYNFM 384 (452)
Q Consensus 372 e~~~~~~~~~~~~ 384 (452)
.+..++++.++..
T Consensus 148 ~~~~~~l~~~~~~ 160 (206)
T 4dzz_A 148 NVLKESIKDTGVK 160 (206)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCc
Confidence 4455666666543
No 443
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.01 E-value=0.077 Score=48.41 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
.++|||.+|+|||||++.+.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999874
No 444
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.00 E-value=0.069 Score=53.90 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCchHHHHHHHhhccC
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQNKF 133 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~~~ 133 (452)
..++|||++|+|||||+|-+++-..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3689999999999999999998543
No 445
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.95 E-value=0.082 Score=47.74 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
-++|+|.+|+|||||++.+.+.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4789999999999999999865
No 446
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.94 E-value=0.077 Score=46.71 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
.++|+|.+|+|||||++.+.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999875
No 447
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=91.93 E-value=0.084 Score=53.32 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=21.3
Q ss_pred EEEEEcCCCCchHHHHHHHhhccC
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNKF 133 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~~ 133 (452)
.|+|||.+|+|||||++++++...
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~ 182 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHP 182 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCC
T ss_pred EEEEECCCCCcHHHHHHHHHcCCc
Confidence 489999999999999999987643
No 448
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.93 E-value=0.08 Score=46.81 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=19.2
Q ss_pred EEEEcCCCCchHHHHHHHhhc
Q psy14768 111 ILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 111 v~ivG~~~vGKs~l~~r~~~~ 131 (452)
++|+|.+|+|||||++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999864
No 449
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.86 E-value=0.082 Score=47.07 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
.++|+|.+|+|||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4789999999999999999875
No 450
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.66 E-value=0.092 Score=45.14 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
.|+|+|.+|+||||+.+++...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 451
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.64 E-value=0.09 Score=47.33 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHHhhcc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNK 132 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~ 132 (452)
.++|+|.+|+|||||++.+.+-.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999998743
No 452
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.54 E-value=0.082 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhcc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNK 132 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~ 132 (452)
.++++|.+|+|||||+|.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999998644
No 453
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.50 E-value=0.094 Score=47.03 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
.|+|+|.+|+|||||.+++...
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4799999999999999999764
No 454
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.28 E-value=0.11 Score=46.83 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCchHHHHHHHhhc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
..|+|+|.+|.|||||++.+.+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999988764
No 455
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.26 E-value=0.11 Score=50.94 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCchHHHHHHHhhc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
..|+++|.+|+|||||++.+.+.
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 57899999999999999999754
No 456
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.06 E-value=0.1 Score=45.55 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchHHHHHHHh
Q psy14768 110 KILVIGDSTVGKTSYVQGFV 129 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~ 129 (452)
-++|+|.+|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999864
No 457
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.03 E-value=0.11 Score=50.15 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchHHHHHHHh
Q psy14768 110 KILVIGDSTVGKTSYVQGFV 129 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~ 129 (452)
.++++|.+|||||||+|.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999998
No 458
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.91 E-value=0.12 Score=44.72 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
-++|.|.+|+|||+|++.+...
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998764
No 459
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.81 E-value=0.12 Score=46.47 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
+|+|.|.+|+||||+.+++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999653
No 460
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=90.76 E-value=0.13 Score=44.49 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
.|+|+|.+|+||||+++.+.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 461
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.76 E-value=0.12 Score=46.47 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
+|+|.|.+|+||||+..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 462
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.73 E-value=0.13 Score=45.42 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCchHHHHHHHhhc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
..++|+|.+|+|||||++++++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35889999999999999999875
No 463
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=90.68 E-value=0.15 Score=52.02 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.2
Q ss_pred cEEEEEEEcCCCCchHHHHHHHhhc
Q psy14768 107 TVLKILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 107 ~~~kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
...-|.|+|.+++|||+|+|++++.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 3567999999999999999999875
No 464
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.57 E-value=0.12 Score=46.25 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
+++|+|.+|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4789999999999999998874
No 465
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.44 E-value=0.15 Score=45.33 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhcc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNK 132 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~ 132 (452)
.++|+|.+|+||||+++.+.+..
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999998754
No 466
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.42 E-value=0.17 Score=43.82 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQ 130 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~ 130 (452)
.|+|+|-||+||||+.+++..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999986
No 467
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.26 E-value=0.15 Score=45.17 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
.|+|+|.+|+||||+.+.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999763
No 468
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.13 E-value=0.15 Score=45.46 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCchHHHHHHHhh
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQ 130 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~ 130 (452)
.+|+|+|.+|+||||+.+.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
No 469
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.05 E-value=0.17 Score=44.25 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
.|+|.|-+|+||||+.+.+...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 470
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=90.03 E-value=0.16 Score=45.42 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
.++|+|.+|+|||||++.+.+.
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999999764
No 471
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.02 E-value=0.16 Score=45.33 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
.|+|+|.+|+||||+.+.+.+.
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 472
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.00 E-value=0.16 Score=46.62 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCchHHHHHHHhhc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
..|+|+|-+|+||||+.+.+...
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999754
No 473
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=89.87 E-value=0.17 Score=44.58 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQ 130 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~ 130 (452)
.++|+|.+|+|||||++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 474
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=89.84 E-value=0.17 Score=45.27 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCchHHHHHHHhhc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
..|+|+|.+|+|||||++.+.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998764
No 475
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.79 E-value=0.099 Score=46.00 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
.++|||.+|+|||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 476
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=89.72 E-value=0.18 Score=46.66 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQ 130 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~ 130 (452)
.|+|+|.+|+|||||++.+..
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999984
No 477
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=89.71 E-value=0.15 Score=44.58 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHHhhcc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNK 132 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~ 132 (452)
.++|+|.+|+|||+|++.+.+.-
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47999999999999999887643
No 478
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=89.71 E-value=0.18 Score=45.58 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCchHHHHHHHhhc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
.+|+|+|.+|+||||+++.+.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999764
No 479
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=89.71 E-value=0.19 Score=44.86 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
.|+|+|.+|+||||+.+.+.+.
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 480
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.55 E-value=0.18 Score=48.65 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
.++|||.+|.|||||++-+.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 5899999999999999998764
No 481
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.54 E-value=0.18 Score=43.14 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchHHHHHHH
Q psy14768 110 KILVIGDSTVGKTSYVQGF 128 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~ 128 (452)
.|+|+|.+|+||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999999
No 482
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.51 E-value=0.17 Score=45.63 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhcc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNK 132 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~ 132 (452)
.++|+|.+|+|||||++.+++.-
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998743
No 483
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.48 E-value=1.3 Score=39.75 Aligned_cols=83 Identities=7% Similarity=-0.050 Sum_probs=55.0
Q ss_pred EEEEEEecCCc-chhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCccc
Q psy14768 292 VKLQIWDIAGQ-DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVE 370 (452)
Q Consensus 292 ~~l~l~DtaG~-e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~ 370 (452)
+.+.++||++. ... .....+..+|.+|++...+ ..+...+..++..+... .+.++.+|+|+.|.... ..
T Consensus 68 yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~------~~~~~~vv~N~~~~~~~-~~ 137 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKL------GNNRFRILLTIIPPYPS-KD 137 (209)
T ss_dssp CSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHT------CSSSEEEEECSBCCTTS-CH
T ss_pred CCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhc------cCCCEEEEEEecCCccc-hH
Confidence 45778899876 322 2345678999999998865 56667776766666653 13668899999986420 22
Q ss_pred HHHHHHHHHHcCCC
Q psy14768 371 INEIEAVCHQYNFM 384 (452)
Q Consensus 371 ~e~~~~~~~~~~~~ 384 (452)
..++.+++++++..
T Consensus 138 ~~~~~~~l~~~g~~ 151 (209)
T 3cwq_A 138 GDEARQLLTTAGLP 151 (209)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCc
Confidence 45556666666643
No 484
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=89.19 E-value=0.22 Score=43.11 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCchHHHHHHHhhc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
..++|+|.+|+||||+++.+.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 35899999999999999998753
No 485
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.99 E-value=0.15 Score=43.96 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhcc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNK 132 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~ 132 (452)
-++|.|.+|+|||+|+..+...-
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999887643
No 486
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=88.97 E-value=0.054 Score=47.95 Aligned_cols=21 Identities=48% Similarity=0.768 Sum_probs=19.2
Q ss_pred cEEEeeecccCCcceeeeccc
Q psy14768 242 PILITGDSTVGKTSYVQGFVQ 262 (452)
Q Consensus 242 kI~ivG~~nvGKSSLin~l~~ 262 (452)
+++++|++|+|||||++.+.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998876
No 487
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=88.86 E-value=0.24 Score=43.25 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
.|+|+|.+|+||||+.+.+...
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 488
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=88.82 E-value=0.23 Score=42.99 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhcc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQNK 132 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~~ 132 (452)
.++|+|+.|.|||||++-+++-.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999999999998765
No 489
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.81 E-value=0.26 Score=43.01 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCchHHHHHHHhh
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQ 130 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~ 130 (452)
..|+|+|.+|+||||+.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 490
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=88.65 E-value=0.23 Score=43.00 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
.|+|+|-+|+||||+.+.+...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999764
No 491
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.54 E-value=0.24 Score=45.85 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
.++|+|.+|+|||||++-+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 492
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.51 E-value=0.22 Score=45.16 Aligned_cols=23 Identities=13% Similarity=0.394 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCchHHHHHHHhhc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
+.|+|+|.||+||+|...+++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999864
No 493
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.49 E-value=0.23 Score=45.49 Aligned_cols=21 Identities=29% Similarity=0.662 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQ 130 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~ 130 (452)
-++|+|.+|+|||||++.++.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999999884
No 494
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.47 E-value=0.23 Score=44.67 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
-++|+|++|+|||||++.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3788999999999999999854
No 495
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.47 E-value=0.23 Score=44.72 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
+|+|.|.+|+||||+.+++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
No 496
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=88.46 E-value=0.26 Score=43.00 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCchHHHHHHHhh
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQ 130 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~ 130 (452)
..|+|.|-+|+||||+.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 497
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.38 E-value=0.17 Score=46.18 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=14.7
Q ss_pred EEEEEcCCCCchHHHHHHHh-hc
Q psy14768 110 KILVIGDSTVGKTSYVQGFV-QN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~-~~ 131 (452)
.++|+|.+|+|||||++.+. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48899999999999999998 54
No 498
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.37 E-value=0.25 Score=46.07 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHHhhc
Q psy14768 110 KILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 110 kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
.++|+|.+|+|||||++-+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998764
No 499
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=88.35 E-value=0.29 Score=43.67 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCchHHHHHHHhh
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQ 130 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~ 130 (452)
+.|+|+|.+|+||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 500
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=88.35 E-value=0.28 Score=43.84 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCchHHHHHHHhhc
Q psy14768 109 LKILVIGDSTVGKTSYVQGFVQN 131 (452)
Q Consensus 109 ~kv~ivG~~~vGKs~l~~r~~~~ 131 (452)
..|+|+|.+|+||||+++.+.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999764
Done!