RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14768
(452 letters)
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 173 bits (442), Expect = 1e-52
Identities = 44/169 (26%), Positives = 89/169 (52%), Gaps = 4/169 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V +K+ YK T+G DF TK ++ G + +Q+WD AGQ
Sbjct: 11 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVD--GDKVATMQVWDTAGQ 68
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+TN SFE++ W+ + +++ P ++L +K
Sbjct: 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128
Query: 363 DLPD--RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
D + + V + + + S+K + ++ + + +
Sbjct: 129 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177
Score = 75.7 bits (187), Expect = 3e-16
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
++I GDS VGKTS + +V +K+ YK T+G DF TK ++ G + +Q+WD
Sbjct: 11 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVD--GDKVATMQVWDT 65
Score = 68.0 bits (167), Expect = 1e-13
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S + +LK++++GDS VGKTS + +V +K+ YK T+G DF TK
Sbjct: 3 SRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTK 48
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 173 bits (441), Expect = 5e-52
Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 13/210 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD AGQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV---MVDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
DL +RQV +A C+ N + + E S+KE + +E + + + + E E
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFP 187
Query: 423 SSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
I+L + A + C C
Sbjct: 188 EPIKLDKNE----------RAKASAESCSC 207
Score = 75.0 bits (185), Expect = 7e-16
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I GDS VGKTS + +V KF + YK T+G DF TK + R V +QIWD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV---MVDDRLVTMQIWD 63
Score = 65.8 bits (161), Expect = 1e-12
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ +LK++++GDS VGKTS + +V KF + YK T+G DF TK
Sbjct: 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 170 bits (434), Expect = 2e-51
Identities = 50/167 (29%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GD VGK+S + +V NKF +T+GV+F K L + G V +QIWD AGQ
Sbjct: 10 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDL---EVDGHFVTMQIWDTAGQ 66
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ SD C++ F + + +SF+++ WK + + P ++L +K
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
D+ +RQV E +A C + E S+K+ + + V R++
Sbjct: 127 DISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173
Score = 77.9 bits (193), Expect = 4e-17
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ GD VGK+S + +V NKF +T+GV+F K L + G V +QIWD
Sbjct: 10 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDL---EVDGHFVTMQIWD 62
Score = 68.3 bits (168), Expect = 9e-14
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ ++ K++++GD VGK+S + +V NKF +T+GV+F K L
Sbjct: 2 AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDL 49
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 155 bits (393), Expect = 3e-45
Identities = 56/182 (30%), Positives = 98/182 (53%), Gaps = 9/182 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
ILI G+S VGK+S + F + F T+GVDF K + G KL IWD AGQ
Sbjct: 18 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTI---SVDGNKAKLAIWDTAGQ 74
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ ++ YY+ + G I+++D+T R +F + W ++L++ C + +L+ +K
Sbjct: 75 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYC---TRNDIVNMLVGNKI 131
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
D +R+V+ NE +++ M +IE S+K ++ + LV++II + E +
Sbjct: 132 DKENREVDRNEGLKFARKHS-MLFIEASAKTCDGVQCAFEELVEKII--QTPGLWESENQ 188
Query: 423 SS 424
+S
Sbjct: 189 NS 190
Score = 74.2 bits (183), Expect = 1e-15
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
ILI G+S VGK+S + F + F T+GVDF K + G KL IWD
Sbjct: 18 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTI---SVDGNKAKLAIWD 70
Score = 63.4 bits (155), Expect = 6e-12
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
D T LKIL+IG+S VGK+S + F + F T+GVDF K +
Sbjct: 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTI 57
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 154 bits (391), Expect = 3e-45
Identities = 44/168 (26%), Positives = 93/168 (55%), Gaps = 10/168 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ G+ VGK+S +Q + + F +YK T+GVDF + + + V+L +WD AGQ
Sbjct: 8 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQI---QVNDEDVRLMLWDTAGQ 64
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+ + +++ YY+ + C+++F T+R+SFE++ W+ + ++ + +P L+ +K
Sbjct: 65 EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GD---IPTALVQNKI 119
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
DL D ++ E E + + + + S KE L + + +L ++ +
Sbjct: 120 DLLDDSCIKNEEAEGLAKRLK-LRFYRTSVKEDLNVSEVFKYLAEKHL 166
Score = 76.4 bits (189), Expect = 1e-16
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ G+ VGK+S +Q + + F +YK T+GVDF + + + V+L +WD
Sbjct: 8 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQI---QVNDEDVRLMLWD 60
Score = 64.4 bits (158), Expect = 2e-12
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+K++V+G+ VGK+S +Q + + F +YK T+GVDF +
Sbjct: 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLER 45
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 153 bits (390), Expect = 4e-45
Identities = 54/174 (31%), Positives = 100/174 (57%), Gaps = 10/174 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ GDS VGK+ + FV++KF ++ T+G+DF K + G+ VKLQIWD AGQ
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTV---DINGKKVKLQIWDTAGQ 62
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ ++ YY+ + G I+++D+T+ ++F ++ QW ++ ++ A L LL+ +K
Sbjct: 63 ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA--NDEAQL--LLVGNKS 118
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
D+ R V ++ EA+ + + +IE S+K + + L I ++++
Sbjct: 119 DMETRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQ--EKIDS 169
Score = 74.1 bits (183), Expect = 7e-16
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 171 YL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ IL+ GDS VGK+ + FV++KF ++ T+G+DF K + G+ VKLQIWD
Sbjct: 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTV---DINGKKVKLQIWD 58
Score = 62.6 bits (153), Expect = 8e-12
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
++KIL+IGDS VGK+ + FV++KF ++ T+G+DF K +
Sbjct: 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTV 45
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 154 bits (391), Expect = 5e-45
Identities = 56/182 (30%), Positives = 91/182 (50%), Gaps = 14/182 (7%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL-------SHKKYGGRPVKLQ 295
L GDS VGKTS + + KF + TVG+DF K + G+ + LQ
Sbjct: 14 FLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQ 73
Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
+WD AG +R+ ++ +++++ G +++FDLTN +SF +V W L +N
Sbjct: 74 LWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSEN---PDI 130
Query: 356 LLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
+L +K DL D R V+ E + +Y + + E S+ I ++ L+D I+ KRM
Sbjct: 131 VLCGNKSDLEDQRAVKEEEARELAEKYG-IPYFETSAANGTNISHAIEMLLDLIM--KRM 187
Query: 415 EE 416
E
Sbjct: 188 ER 189
Score = 74.2 bits (183), Expect = 1e-15
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 171 YL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL-------SHKKYGGRP 221
YL L GDS VGKTS + + KF + TVG+DF K + G+
Sbjct: 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQR 69
Query: 222 VKLQIWD 228
+ LQ+WD
Sbjct: 70 IHLQLWD 76
Score = 63.4 bits (155), Expect = 6e-12
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
++K L +GDS VGKTS + + KF + TVG+DF K +
Sbjct: 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRV 53
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 153 bits (389), Expect = 7e-45
Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 5/171 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ GD GKTS F Q F YK T+G+DF + ++ G V LQIWDI GQ
Sbjct: 9 IVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLP--GNLNVTLQIWDIGGQ 66
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
M Y + G ++++D+TN +SFE++ W + K ++ L+ +K
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVK-KVSEESETQPLVALVGNKI 125
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
DL R ++ + C + S VS+K + + I+ K
Sbjct: 126 DLEHMRTIKPEKHLRFCQENG-FSSHFVSAKTGDSVFLCFQKVAAEILGIK 175
Score = 74.9 bits (185), Expect = 5e-16
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
I++ GD GKTS F Q F YK T+G+DF + ++ G V LQIWDI
Sbjct: 9 IVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLP--GNLNVTLQIWDI 63
Score = 65.3 bits (160), Expect = 1e-12
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
LKI+V+GD GKTS F Q F YK T+G+DF + +
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRI 48
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 153 bits (388), Expect = 1e-44
Identities = 56/181 (30%), Positives = 104/181 (57%), Gaps = 12/181 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD AGQ
Sbjct: 12 LLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWDTAGQ 68
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ ++ YY+ + G I+++D+T+ +SF +V +W H+++ C D+ +L+ +K
Sbjct: 69 ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DDVCR---ILVGNKN 123
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
D P+ + VE + Q + E S+KE++ +E+ N + + ++ + ++ ++
Sbjct: 124 DDPERKVVETEDAYKFAGQMG-IQLFETSAKENVNVEEMFNCITELVL--RAKKDNLAKQ 180
Query: 422 K 422
+
Sbjct: 181 Q 181
Score = 74.9 bits (185), Expect = 5e-16
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 171 YL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+L +LI GDS VGK+S + F N F +Y T+GVDF + + + G VKLQIWD
Sbjct: 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWD 64
Score = 62.6 bits (153), Expect = 9e-12
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS VGK+S + F N F +Y T+GVDF + +
Sbjct: 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV 51
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 154 bits (391), Expect = 1e-44
Identities = 57/190 (30%), Positives = 102/190 (53%), Gaps = 14/190 (7%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL-------SHKKYGGRPVKLQ 295
+L GDS VGKT+++ + NKF + TVG+DF K + + V LQ
Sbjct: 28 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQ 87
Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
+WD AGQ+R+ ++ +++++ G ++MFDLT+++SF +V W L + +N
Sbjct: 88 LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN---PDI 144
Query: 356 LLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
+L+ +K DLPD R+V + + +Y + + E S+ +E ++ L+D I+ KRM
Sbjct: 145 VLIGNKADLPDQREVNERQARELADKYG-IPYFETSAATGQNVEKAVETLLDLIM--KRM 201
Query: 415 EEEAVERKSS 424
E+ + +
Sbjct: 202 EQCVEKTQIP 211
Score = 72.4 bits (178), Expect = 7e-15
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 171 YL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL-------SHKKYGGRP 221
YL +L GDS VGKT+++ + NKF + TVG+DF K + +
Sbjct: 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFK 83
Query: 222 VKLQIWD 228
V LQ+WD
Sbjct: 84 VHLQLWD 90
Score = 63.9 bits (156), Expect = 6e-12
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
++K+L +GDS VGKT+++ + NKF + TVG+DF K +
Sbjct: 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRV 67
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 153 bits (388), Expect = 2e-44
Identities = 54/173 (31%), Positives = 98/173 (56%), Gaps = 10/173 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I G VGKTS ++ F + F + K+TVGVDF K + + G+ ++LQIWD AGQ
Sbjct: 29 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTV---ELRGKKIRLQIWDTAGQ 85
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ ++ YY+++ G I+++D+T +++F+ + +W +D D LL+ +K
Sbjct: 86 ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED----AELLLVGNKL 141
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
D R++ + E Q M + E S+K++ +++ LVD I+ K+M
Sbjct: 142 DCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL--KKM 192
Score = 74.2 bits (183), Expect = 1e-15
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I G VGKTS ++ F + F + K+TVGVDF K + + G+ ++LQIWD
Sbjct: 29 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTV---ELRGKKIRLQIWD 81
Score = 64.9 bits (159), Expect = 2e-12
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 86 SNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
S+ PR S P A+ L++++IG VGKTS ++ F + F + K+TVGVDF
Sbjct: 11 SSGLVPRGS-------PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDF 63
Query: 146 STKLL 150
K +
Sbjct: 64 KIKTV 68
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 152 bits (387), Expect = 4e-44
Identities = 53/197 (26%), Positives = 105/197 (53%), Gaps = 10/197 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ GDS VGK+ + FV++KF ++ T+G+DF K + G+ VKLQ+WD AGQ
Sbjct: 23 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTV---DINGKKVKLQLWDTAGQ 79
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ ++ YY+ + G I+++D+T+ ++F ++ QW ++ ++ A L LL+ +K
Sbjct: 80 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA--NDEAQL--LLVGNKS 135
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
D+ R V ++ EA+ + + +IE S+K + + L I ++++ +
Sbjct: 136 DMETRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQ--EKIDSNKLVGV 192
Query: 423 SSIRLSEETLRDDQPKK 439
+ + ++
Sbjct: 193 GNGKEGNISINSGSGNS 209
Score = 73.1 bits (180), Expect = 4e-15
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
IL+ GDS VGK+ + FV++KF ++ T+G+DF K + G+ VKLQ+WD
Sbjct: 23 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTV---DINGKKVKLQLWD 75
Score = 61.6 bits (150), Expect = 3e-11
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 88 SPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147
S S + D+ ++KIL+IGDS VGK+ + FV++KF ++ T+G+DF
Sbjct: 2 SGLRTVSASSGNGKSYDS--IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKI 59
Query: 148 KLL 150
K +
Sbjct: 60 KTV 62
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 152 bits (386), Expect = 4e-44
Identities = 58/175 (33%), Positives = 101/175 (57%), Gaps = 10/175 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GD++VGKT VQ F F + +T+GVDF+ K L + G+ VKLQIWD AGQ
Sbjct: 32 LVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTL---EIQGKRVKLQIWDTAGQ 88
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ +++ YY++++G I+ +D+T R SF SV W D+ + + LL+ +K
Sbjct: 89 ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN----IVQLLIGNKS 144
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
DL + R+V + E +++ Y+ + IE S+K+ +E++ + +I R
Sbjct: 145 DLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI--MRHGG 197
Score = 78.8 bits (195), Expect = 3e-17
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 151 SHKKYGGRPYGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 208
H G P G+ P + +L +++ GD++VGKT VQ F F + +T+GVDF+
Sbjct: 8 HHHSSGLVPRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFT 67
Query: 209 TKLLSHKKYGGRPVKLQIWD 228
K L + G+ VKLQIWD
Sbjct: 68 MKTL---EIQGKRVKLQIWD 84
Score = 62.7 bits (153), Expect = 1e-11
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 86 SNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
S+ PR S + + K++++GD++VGKT VQ F F + +T+GVDF
Sbjct: 11 SSGLVPRGS----GDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDF 66
Query: 146 STKLL 150
+ K L
Sbjct: 67 TMKTL 71
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 150 bits (382), Expect = 9e-44
Identities = 47/183 (25%), Positives = 99/183 (54%), Gaps = 11/183 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
L+ G++ GK+ + F++ KF D+ +T+GV+F +K++ GG+ VKLQIWD AGQ
Sbjct: 13 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKII---NVGGKYVKLQIWDTAGQ 69
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ ++R YY+ + G ++++D+T+R+++ ++ W D ++ +L +K
Sbjct: 70 ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA--SQNIVI--ILCGNKK 125
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
DL R+V E + + ++E S+ +E++ +I+ ++E ++
Sbjct: 126 DLDADREVTFLEASRFAQENE-LMFLETSALTGENVEEAFVQCARKIL--NKIESGELDP 182
Query: 422 KSS 424
+
Sbjct: 183 ERM 185
Score = 76.4 bits (189), Expect = 1e-16
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 5/60 (8%)
Query: 171 YL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+L L+ G++ GK+ + F++ KF D+ +T+GV+F +K++ GG+ VKLQIWD
Sbjct: 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKII---NVGGKYVKLQIWD 65
Score = 63.7 bits (156), Expect = 5e-12
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K LVIG++ GK+ + F++ KF D+ +T+GV+F +K++
Sbjct: 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKII 52
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 150 bits (382), Expect = 1e-43
Identities = 55/175 (31%), Positives = 98/175 (56%), Gaps = 11/175 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD AGQ
Sbjct: 25 LLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTV---YRHDKRIKLQIWDTAGQ 81
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+RY ++ YY+ + G ++M+D+ N++SF +V W + + + A + +L+ +KC
Sbjct: 82 ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS--WDNAQV--ILVGNKC 137
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
DL D R V + + + E S+KE++ ++ LVD I ++M E
Sbjct: 138 DLEDERVVPAEDGRRLADDLG-FEFFEASAKENINVKQVFERLVDVIC--EKMNE 189
Score = 74.6 bits (184), Expect = 8e-16
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 171 YL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
Y+ +L+ G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTV---YRHDKRIKLQIWD 77
Score = 65.3 bits (160), Expect = 1e-12
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 86 SNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
+S G PR SD + K+L+IG+S+VGKTS++ + + F + +TVG+DF
Sbjct: 2 GSSHHHHHHSSGLVPRGSDY--MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF 59
Query: 146 STKLL 150
K +
Sbjct: 60 KVKTV 64
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 150 bits (381), Expect = 2e-43
Identities = 58/211 (27%), Positives = 107/211 (50%), Gaps = 16/211 (7%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ G+S VGK+ + F + + ++Y +T+GVDF K + + G+ VKLQIWD AGQ
Sbjct: 11 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTV---ELDGKTVKLQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ ++ YY+ S G II++D+T+++SF V W ++D + LL+ +KC
Sbjct: 68 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST----VLKLLVGNKC 123
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
DL D R VE + + M ++E S+ + +ED+ + +I + M ++ +
Sbjct: 124 DLKDKRVVEYDVAKEFADANK-MPFLETSALDSTNVEDAFLTMARQIK--ESMSQQNLNE 180
Query: 422 KSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
+ + + + + C C
Sbjct: 181 TTQKKEDKGNVNLKGQSL-----TNTGGCCC 206
Score = 73.9 bits (182), Expect = 2e-15
Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+L+ G+S VGK+ + F + + ++Y +T+GVDF K + + G+ VKLQIWD
Sbjct: 11 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTV---ELDGKTVKLQIWD 63
Score = 61.9 bits (151), Expect = 2e-11
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S VGK+ + F + + ++Y +T+GVDF K +
Sbjct: 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTV 50
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 150 bits (380), Expect = 3e-43
Identities = 46/179 (25%), Positives = 97/179 (54%), Gaps = 11/179 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
L+ G + GK+ + F++NKF + +T+GV+F ++++ GG+ VKLQIWD AGQ
Sbjct: 28 FLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVV---NVGGKTVKLQIWDTAGQ 84
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ ++R YY+ + G ++++D+T+R+++ S+ W D + + + +L +K
Sbjct: 85 ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN----IVVILCGNKK 140
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
DL R+V E + + ++E S+ +E++ I+ +++ ++
Sbjct: 141 DLDPEREVTFLEASRFAQENE-LMFLETSALTGENVEEAFLKCARTIL--NKIDSGELD 196
Score = 76.9 bits (190), Expect = 2e-16
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 5/60 (8%)
Query: 171 YL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+L L+ G + GK+ + F++NKF + +T+GV+F ++++ GG+ VKLQIWD
Sbjct: 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVV---NVGGKTVKLQIWD 80
Score = 66.1 bits (162), Expect = 8e-13
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 88 SPSPRASVIGFEPRPSDA-ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146
S G PR S + + K LVIG + GK+ + F++NKF + +T+GV+F
Sbjct: 4 SHHHHHHSSGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFG 63
Query: 147 TKLL 150
++++
Sbjct: 64 SRVV 67
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 149 bits (378), Expect = 3e-43
Identities = 52/182 (28%), Positives = 101/182 (55%), Gaps = 11/182 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ GDS VGKT + F ++ F + +T+G+DF + + + G+ +KLQIWD AGQ
Sbjct: 11 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI---ELDGKRIKLQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ ++ YY+ + G ++++D+TN KSF+++ W +++ ++L +KC
Sbjct: 68 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA--SADVEK--MILGNKC 123
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
D+ D RQV E + Y + ++E S+K ++ +E++ L I +M++
Sbjct: 124 DVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIK--AKMDKNWKAT 180
Query: 422 KS 423
+
Sbjct: 181 AA 182
Score = 74.2 bits (183), Expect = 8e-16
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 171 YL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
YL +L+ GDS VGKT + F ++ F + +T+G+DF + + + G+ +KLQIWD
Sbjct: 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI---ELDGKRIKLQIWD 63
Score = 62.6 bits (153), Expect = 1e-11
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS VGKT + F ++ F + +T+G+DF + +
Sbjct: 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI 50
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 149 bits (378), Expect = 5e-43
Identities = 53/173 (30%), Positives = 97/173 (56%), Gaps = 11/173 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ GDS VGK+ + F + + ++Y +T+GVDF + + + G+ +KLQIWD AGQ
Sbjct: 36 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTAGQ 92
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ ++ YY+ + G I+++D+T+++SF +V QW ++D + + LL+ +KC
Sbjct: 93 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN----VNKLLVGNKC 148
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
DL + V+ + + ++E S+K +E S + I KRM
Sbjct: 149 DLTTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIK--KRM 198
Score = 76.1 bits (188), Expect = 3e-16
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 157 GRPYGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 214
GRP + +P YL +L+ GDS VGK+ + F + + ++Y +T+GVDF + +
Sbjct: 20 GRPMSSMNP--EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI-- 75
Query: 215 KKYGGRPVKLQIWD 228
+ G+ +KLQIWD
Sbjct: 76 -ELDGKTIKLQIWD 88
Score = 63.1 bits (154), Expect = 9e-12
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS VGK+ + F + + ++Y +T+GVDF + +
Sbjct: 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI 75
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 150 bits (380), Expect = 6e-43
Identities = 49/183 (26%), Positives = 98/183 (53%), Gaps = 11/183 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ GDS VGK++ + F +N+F + K+T+GV+F+T+ L + G+ +K QIWD AGQ
Sbjct: 16 IVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTL---EIEGKRIKAQIWDTAGQ 72
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+RY ++ YY+ + G +I++D++ S+E+ W +L + + L+ +K
Sbjct: 73 ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDN----VAVGLIGNKS 128
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
DL R V E + + + + E S+ ++ + L++ I +++ + ++
Sbjct: 129 DLAHLRAVPTEESKTFAQENQ-LLFTETSALNSENVDKAFEELINTIY--QKVSKHQMDL 185
Query: 422 KSS 424
S
Sbjct: 186 GDS 188
Score = 75.1 bits (185), Expect = 1e-15
Identities = 23/56 (41%), Positives = 39/56 (69%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
I++ GDS VGK++ + F +N+F + K+T+GV+F+T+ L + G+ +K QIWD
Sbjct: 16 IVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTL---EIEGKRIKAQIWD 68
Score = 62.0 bits (151), Expect = 3e-11
Identities = 19/43 (44%), Positives = 33/43 (76%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KI++IGDS VGK++ + F +N+F + K+T+GV+F+T+ L
Sbjct: 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTL 55
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 148 bits (377), Expect = 6e-43
Identities = 54/179 (30%), Positives = 98/179 (54%), Gaps = 11/179 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ GDS VGK+ + F + + ++Y +T+GVDF + + + G+ +KLQIWD AGQ
Sbjct: 19 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTAGQ 75
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ ++ YY+ + G I+++D+T+++SF +V QW ++D + + LL+ +KC
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN----VNKLLVGNKC 131
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
DL + V+ + + ++E S+K +E S + I KRM A
Sbjct: 132 DLTTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIK--KRMGPGATA 187
Score = 74.6 bits (184), Expect = 9e-16
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+L+ GDS VGK+ + F + + ++Y +T+GVDF + + + G+ +KLQIWD
Sbjct: 19 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWD 71
Score = 62.3 bits (152), Expect = 1e-11
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IGDS VGK+ + F + + ++Y +T+GVDF + +
Sbjct: 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI 58
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 148 bits (377), Expect = 7e-43
Identities = 57/175 (32%), Positives = 99/175 (56%), Gaps = 11/175 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+LI G+S+VGKTS++ + + F + +TVG+DF K + + VKLQIWD AGQ
Sbjct: 26 LLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTV---YRHEKRVKLQIWDTAGQ 82
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+RY ++ YY+ + G I+M+D+TN +SF +V W + + + A + +L+ +KC
Sbjct: 83 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS--WDNAQV--ILVGNKC 138
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
D+ + R V + + + Q + E S+KE++ + + LVD I +M +
Sbjct: 139 DMEEERVVPTEKGQLLAEQLG-FDFFEASAKENISVRQAFERLVDAIC--DKMSD 190
Score = 73.4 bits (181), Expect = 2e-15
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 171 YL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
Y+ +LI G+S+VGKTS++ + + F + +TVG+DF K + + VKLQIWD
Sbjct: 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTV---YRHEKRVKLQIWD 78
Score = 61.9 bits (151), Expect = 2e-11
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+L+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTV 65
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 147 bits (374), Expect = 1e-42
Identities = 47/168 (27%), Positives = 90/168 (53%), Gaps = 9/168 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+I GD VGK+ + F + KF+ + +T+GV+F T+++ + G+ +KLQIWD AGQ
Sbjct: 18 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII---EVSGQKIKLQIWDTAGQ 74
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ ++R YY+ + G ++++D+T R ++ + W D + + +L+ +K
Sbjct: 75 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN----TVIILIGNKA 130
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
DL R V E + + + ++E S+K +ED+ +I
Sbjct: 131 DLEAQRDVTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIY 177
Score = 77.2 bits (191), Expect = 6e-17
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 159 PYGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 216
P G+ + SY+ +I GD VGK+ + F + KF+ + +T+GV+F T+++ +
Sbjct: 2 PLGSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII---E 58
Query: 217 YGGRPVKLQIWD 228
G+ +KLQIWD
Sbjct: 59 VSGQKIKLQIWD 70
Score = 63.7 bits (156), Expect = 4e-12
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K ++IGD VGK+ + F + KF+ + +T+GV+F T+++
Sbjct: 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII 57
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 148 bits (375), Expect = 1e-42
Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 11/183 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ G++ VGKT V+ F Q F T+GVDF K + + G VKLQIWD AGQ
Sbjct: 29 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTV---EINGEKVKLQIWDTAGQ 85
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ +++ YY++++ I+ +D+T +SF + +W +++ + +L+ +K
Sbjct: 86 ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK----VITVLVGNKI 141
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
DL + R+V E + M ++E S+KE +E L R+I + +
Sbjct: 142 DLAERREVSQQRAEEFSEAQD-MYYLETSAKESDNVEKLFLDLACRLI--SEARQNTLVN 198
Query: 422 KSS 424
S
Sbjct: 199 NVS 201
Score = 75.0 bits (185), Expect = 8e-16
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 151 SHKKYGGRPYGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 208
H + ++ +L I++ G++ VGKT V+ F Q F T+GVDF
Sbjct: 5 HHHHHHSSGLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFM 64
Query: 209 TKLLSHKKYGGRPVKLQIWD 228
K + + G VKLQIWD
Sbjct: 65 IKTV---EINGEKVKLQIWD 81
Score = 64.2 bits (157), Expect = 3e-12
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 86 SNSPSPRASVIGFEPRPSDAE--TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGV 143
S+ S G PR S + + KI++IG++ VGKT V+ F Q F T+GV
Sbjct: 3 SSHHHHHHSS-GLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGV 61
Query: 144 DFSTKLL 150
DF K +
Sbjct: 62 DFMIKTV 68
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 148 bits (375), Expect = 2e-42
Identities = 57/183 (31%), Positives = 98/183 (53%), Gaps = 11/183 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD AG
Sbjct: 11 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI---YRNDKRIKLQIWDTAGL 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+RY ++ YY+ + G I+M+D+TN +SF +V W + + + A + LL+ +KC
Sbjct: 68 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS--WDNAQV--LLVGNKC 123
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
D+ D R V + + E S+K+++ ++ + LVD I ++M E
Sbjct: 124 DMEDERVVSSERGRQLADHLG-FEFFEASAKDNINVKQTFERLVDVIC--EKMSESLDTA 180
Query: 422 KSS 424
+
Sbjct: 181 DPA 183
Score = 74.2 bits (183), Expect = 1e-15
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 171 YL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
Y+ ILI G+S+VGKTS++ + + F + +TVG+DF K + + +KLQIWD
Sbjct: 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI---YRNDKRIKLQIWD 63
Score = 61.9 bits (151), Expect = 2e-11
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ KIL+IG+S+VGKTS++ + + F + +TVG+DF K +
Sbjct: 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 50
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 147 bits (373), Expect = 2e-42
Identities = 47/176 (26%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ G+S VGKT+ + F +N+F + + T+GV+FST+ + G VK QIWD AG
Sbjct: 28 VVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTV---MLGTAAVKAQIWDTAGL 84
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+RY ++ YY+ + G +++FDLT +++ V +W +L + +L+ +K
Sbjct: 85 ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT----IVVMLVGNKS 140
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
DL R+V E + ++E S+ + +E + ++ I ++ ++
Sbjct: 141 DLSQAREVPTEEARMFAENNG-LLFLETSALDSTNVELAFETVLKEIF--AKVSKQ 193
Score = 75.0 bits (185), Expect = 6e-16
Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ G+S VGKT+ + F +N+F + + T+GV+FST+ + G VK QIWD
Sbjct: 28 VVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTV---MLGTAAVKAQIWD 80
Score = 63.0 bits (154), Expect = 7e-12
Identities = 22/55 (40%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 97 GFEPRPSDA-ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
G PR S+ V K+++IG+S VGKT+ + F +N+F + + T+GV+FST+ +
Sbjct: 13 GLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTV 67
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 147 bits (374), Expect = 2e-42
Identities = 49/183 (26%), Positives = 105/183 (57%), Gaps = 11/183 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GDS VGK++ + F +N+F K+T+GV+F+T+ + + G+ +K QIWD AGQ
Sbjct: 8 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVDGKTIKAQIWDTAGQ 64
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+RY ++ YY+ + G ++++D+ ++E+V +W +L + + +L+ +K
Sbjct: 65 ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN----IVIMLVGNKS 120
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
DL R V +E A + N +S+IE S+ + +E++ ++ I + + ++ +
Sbjct: 121 DLRHLRAVPTDEARAFAEKNN-LSFIETSALDSTNVEEAFKNILTEIY--RIVSQKQIAD 177
Query: 422 KSS 424
+++
Sbjct: 178 RAA 180
Score = 75.4 bits (186), Expect = 5e-16
Identities = 23/60 (38%), Positives = 40/60 (66%), Gaps = 5/60 (8%)
Query: 171 YL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
YL +++ GDS VGK++ + F +N+F K+T+GV+F+T+ + + G+ +K QIWD
Sbjct: 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVDGKTIKAQIWD 60
Score = 62.7 bits (153), Expect = 1e-11
Identities = 17/43 (39%), Positives = 32/43 (74%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K+++IGDS VGK++ + F +N+F K+T+GV+F+T+ +
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI 47
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 147 bits (373), Expect = 6e-42
Identities = 49/185 (26%), Positives = 92/185 (49%), Gaps = 12/185 (6%)
Query: 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
+ +++ GD GKT++V+ + +F Y T+GV+ + P+K +WD
Sbjct: 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVF---HTNRGPIKFNVWD 70
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
AGQ+++ + YY + IIMFD+T+R ++++V W DL C +N +P +L
Sbjct: 71 TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--EN---IPIVLC 125
Query: 359 ASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
+K D+ DR+V+ V H+ + + ++S+K + E +L ++I E
Sbjct: 126 GNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI--GDPNLEF 181
Query: 419 VERKS 423
V +
Sbjct: 182 VAMPA 186
Score = 72.0 bits (177), Expect = 1e-14
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 167 QTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
P +++ GD GKT++V+ + +F Y T+GV+ + P+K
Sbjct: 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVF---HTNRGPIKF 66
Query: 225 QIWD 228
+WD
Sbjct: 67 NVWD 70
Score = 62.3 bits (152), Expect = 3e-11
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ + K++++GD GKT++V+ + +F Y T+GV+ +
Sbjct: 6 SAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVF 57
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 146 bits (370), Expect = 6e-42
Identities = 46/175 (26%), Positives = 93/175 (53%), Gaps = 11/175 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+I GD+ VGK+ + F +F + T+GV+F +++ G+ +KLQIWD AGQ
Sbjct: 24 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV---NIDGKQIKLQIWDTAGQ 80
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+ + ++R YY+ + G ++++D+T R++F + W D + + +L+ +K
Sbjct: 81 ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN----MVIMLIGNKS 136
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
DL R V+ E EA ++ + ++E S+K +E++ I +++++
Sbjct: 137 DLESRRDVKREEGEAFAREHG-LIFMETSAKTACNVEEAFINTAKEIY--RKIQQ 188
Score = 76.9 bits (190), Expect = 1e-16
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 157 GRPYGTFSPIQTPSY-----LILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 211
+ S P I+I GD+ VGK+ + F +F + T+GV+F ++
Sbjct: 4 SHHHHHHSSGLVPRGSYLFKYIII-GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM 62
Query: 212 LSHKKYGGRPVKLQIWD 228
+ G+ +KLQIWD
Sbjct: 63 V---NIDGKQIKLQIWD 76
Score = 63.0 bits (154), Expect = 8e-12
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
+ K ++IGD+ VGK+ + F +F + T+GV+F +++
Sbjct: 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV 63
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 146 bits (370), Expect = 7e-42
Identities = 47/167 (28%), Positives = 94/167 (56%), Gaps = 9/167 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GDS VGK++ + F +N+F K+T+GV+F+T+ + + G+ +K QIWD AG
Sbjct: 32 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVDGKTIKAQIWDTAGL 88
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+RY ++ YY+ + G ++++D+ ++E+V +W +L + + +L+ +K
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN----IVIMLVGNKS 144
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
DL R V +E A + +S+IE S+ + +E + ++ I
Sbjct: 145 DLRHLRAVPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTILTEI 190
Score = 76.5 bits (189), Expect = 2e-16
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 157 GRPYGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 214
GR GT YL +++ GDS VGK++ + F +N+F K+T+GV+F+T+ +
Sbjct: 16 GRAMGTRD--DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI-- 71
Query: 215 KKYGGRPVKLQIWD 228
+ G+ +K QIWD
Sbjct: 72 -QVDGKTIKAQIWD 84
Score = 64.5 bits (158), Expect = 2e-12
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 72 HKHINALPARELCKSNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQN 131
H H + +P + + + K+++IGDS VGK++ + F +N
Sbjct: 6 HHHHHGIPLPGRAMGTRDD-------------EYDYLFKVVLIGDSGVGKSNLLSRFTRN 52
Query: 132 KFLDNYKNTVGVDFSTKLL 150
+F K+T+GV+F+T+ +
Sbjct: 53 EFNLESKSTIGVEFATRSI 71
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 146 bits (370), Expect = 7e-42
Identities = 48/174 (27%), Positives = 92/174 (52%), Gaps = 15/174 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ GD+ VGK+S++ +N+F +N T+GVDF K L G LQ+WD AGQ
Sbjct: 31 IVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTL---IVDGERTVLQLWDTAGQ 87
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ +++ Y++ +DG ++++D+T KSF ++ +W ++ +P +L+ +K
Sbjct: 88 ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAA----HETVPIMLVGNKA 143
Query: 363 DLPD-------RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
D+ D + V + E + Y + E S+K+ I +++ L +
Sbjct: 144 DIRDTAATEGQKCVPGHFGEKLAMTYG-ALFCETSAKDGSNIVEAVLHLAREVK 196
Score = 77.3 bits (191), Expect = 9e-17
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 146 STKLLSHKKYGGRPYGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTV 203
S+ H G P G+ + + I++ GD+ VGK+S++ +N+F +N T+
Sbjct: 3 SSHHHHHHSSGLVPRGS-AKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATL 61
Query: 204 GVDFSTKLLSHKKYGGRPVKLQIWD 228
GVDF K L G LQ+WD
Sbjct: 62 GVDFQMKTL---IVDGERTVLQLWD 83
Score = 65.8 bits (161), Expect = 1e-12
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 86 SNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
S+ PR S + ++ KI++ GD+ VGK+S++ +N+F +N T+GVDF
Sbjct: 11 SSGLVPRGS-----AKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDF 65
Query: 146 STKLL 150
K L
Sbjct: 66 QMKTL 70
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 145 bits (369), Expect = 1e-41
Identities = 44/199 (22%), Positives = 90/199 (45%), Gaps = 8/199 (4%)
Query: 235 PIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 294
P Q Y +++ G VGK+S V FV+ F D Y T+ + + L
Sbjct: 3 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVI----SCDKSVCTL 58
Query: 295 QIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP 354
QI D G ++ M R+ I++F +T+++S E + + I + +P
Sbjct: 59 QITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQ--IKGSVEDIP 116
Query: 355 CLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
+L+ +KCD R+V+ E +AV ++ +++E S+K + +++ L+ + + M
Sbjct: 117 VMLVGNKCDETQREVDTREAQAVAQEWK-CAFMETSAKMNYNVKELFQELL-TLETRRNM 174
Query: 415 EEEAVERKSSIRLSEETLR 433
++S + + ++
Sbjct: 175 SLNIDGKRSGKQKRTDRVK 193
Score = 61.1 bits (149), Expect = 4e-11
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 165 PIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
P Q+ Y +++ G VGK+S V FV+ F D Y T+ + + L
Sbjct: 3 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVI----SCDKSVCTL 58
Query: 225 QIWD 228
QI D
Sbjct: 59 QITD 62
Score = 50.7 bits (122), Expect = 1e-07
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
+++V G VGK+S V FV+ F D Y T+ + +
Sbjct: 10 RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVI 49
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 144 bits (365), Expect = 2e-41
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 8/172 (4%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ Y +++ G VGK++ +QN F+D T+ + ++ G L I
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQV----VIDGETCLLDIL 56
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+ Y M Y + +G + +F + N KSFE + Q++ + D+ +P +L
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVL 113
Query: 358 LASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+ +K DL R VE + + + Y + +IE S+K +ED+ LV I
Sbjct: 114 VGNKSDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIR 164
Score = 57.9 bits (141), Expect = 3e-10
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
Y +++ G VGK++ +QN F+D T+ + ++ G L I D
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQV----VIDGETCLLDILD 57
Score = 50.2 bits (121), Expect = 1e-07
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
T K++V+G VGK++ +QN F+D T+ +
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY 40
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 143 bits (364), Expect = 3e-41
Identities = 49/177 (27%), Positives = 94/177 (53%), Gaps = 12/177 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
+++ GDS VGKT + F F + +TVG+DF K+L G VKLQ+WD AG
Sbjct: 13 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVL---DVDGVKVKLQMWDTAG 69
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
Q+R+ ++ YY+++ ++++D+TN+ SF+++ W ++ + L +LL +K
Sbjct: 70 QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA--QHDVAL--MLLGNK 125
Query: 362 CDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
D R V+ + E + +Y + ++E S+K L ++ + + + +R +
Sbjct: 126 VDSAHERVVKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAKELK--RRSMKA 179
Score = 71.1 bits (175), Expect = 1e-14
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ GDS VGKT + F F + +TVG+DF K+L G VKLQ+WD
Sbjct: 13 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVL---DVDGVKVKLQMWD 66
Score = 59.1 bits (144), Expect = 1e-10
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLL 150
K++++GDS VGKT + F F + +TVG+DF K+L
Sbjct: 12 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVL 53
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 143 bits (364), Expect = 5e-41
Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 10/187 (5%)
Query: 231 CTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR 290
L + Y +++ G VGK++ +QN F+D Y T+ + ++ G
Sbjct: 12 ENLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV----VIDGE 67
Query: 291 PVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNG 350
L I D AGQ+ Y M Y + +G + +F + N KSF + ++ + D+
Sbjct: 68 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDD- 126
Query: 351 AMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
+P +L+ +KCDLP R V+ + + Y + +IE S+K +ED+ LV I
Sbjct: 127 --VPMVLVGNKCDLPTRTVDTKQAHELAKSYG-IPFIETSAKTRQGVEDAFYTLVREIR- 182
Query: 411 SKRMEEE 417
+ ++
Sbjct: 183 -QYRMKK 188
Score = 60.7 bits (148), Expect = 6e-11
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 152 HKKYGGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 211
H GR F + Y +++ G VGK++ +QN F+D Y T+ + ++
Sbjct: 5 HHHSSGRENLYFQGM--TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV 62
Query: 212 LSHKKYGGRPVKLQIWD 228
G L I D
Sbjct: 63 ----VIDGETCLLDILD 75
Score = 49.5 bits (119), Expect = 3e-07
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 97 GFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
G E T K++V+G VGK++ +QN F+D Y T+ + ++
Sbjct: 10 GRENLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV 62
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 143 bits (364), Expect = 5e-41
Identities = 49/184 (26%), Positives = 89/184 (48%), Gaps = 10/184 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +++ G VGK++ +QN F+D Y T+ + ++ G L I D A
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV----VIDGETCLLDILDTA 60
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+ Y M Y + +G + +F + N KSFE + ++ + ++ +P +L+ +
Sbjct: 61 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED---VPMVLVGN 117
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
KCDLP R V+ + + + Y + +IE S+K ++D+ LV I K E+ + +
Sbjct: 118 KCDLPSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIR--KHKEKMSKD 174
Query: 421 RKSS 424
K
Sbjct: 175 GKKK 178
Score = 56.8 bits (138), Expect = 1e-09
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
Y +++ G VGK++ +QN F+D Y T+ + ++ G L I D
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV----VIDGETCLLDILD 58
Score = 50.3 bits (121), Expect = 2e-07
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
T K++V+G VGK++ +QN F+D Y T+ +
Sbjct: 1 GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY 41
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 142 bits (361), Expect = 7e-41
Identities = 57/168 (33%), Positives = 89/168 (52%), Gaps = 9/168 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ G+ VGKTS V + +NKF D + T+G F TK L GG+ V L IWD AGQ
Sbjct: 9 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKL---NIGGKRVNLAIWDTAGQ 65
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +YY++S+G I+++D+T+ SF+ V W +L N L ++ +K
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML--GNEICL--CIVGNKI 121
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
DL R V I E E+ S+K++ IE+ L R+I
Sbjct: 122 DLEKERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELFLDLCKRMI 168
Score = 74.8 bits (185), Expect = 4e-16
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ G+ VGKTS V + +NKF D + T+G F TK L GG+ V L IWD
Sbjct: 9 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKL---NIGGKRVNLAIWD 61
Score = 62.5 bits (153), Expect = 8e-12
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
K++++G+ VGKTS V + +NKF D + T+G F TK
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTK 46
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 143 bits (364), Expect = 8e-41
Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 11/157 (7%)
Query: 243 ILITGDSTVGKTSYVQGFV--QNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW--D 298
+ + G++TVGK++ + F +KFL +Y T GV+ + V ++++ D
Sbjct: 23 VAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPV---TIPDTTVSVELFLLD 79
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
AG D Y Y+ I++FD+++ +SFES W L S + +L+
Sbjct: 80 TAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPL-RAVLV 138
Query: 359 ASKCDLPD--RQVEINEIEAVCHQYNFMSWIEVSSKE 393
A+K DLP QV ++ + + + +VS+
Sbjct: 139 ANKTDLPPQRHQVRLDMAQDWATTNT-LDFFDVSANP 174
Score = 69.2 bits (170), Expect = 8e-14
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 167 QTPSYL--ILITGDSTVGKTSYVQGFV--QNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 222
T + + + G++TVGK++ + F +KFL +Y T GV+ + V
Sbjct: 15 ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPV---TIPDTTV 71
Query: 223 KLQIW 227
++++
Sbjct: 72 SVELF 76
Score = 62.3 bits (152), Expect = 2e-11
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 98 FEPRPSDAETVLKILVIGDSTVGKTSYVQGFV--QNKFLDNYKNTVGVDFSTKLL 150
+P A K+ V+G++TVGK++ + F +KFL +Y T GV+ +
Sbjct: 10 VKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPV 64
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 143 bits (362), Expect = 1e-40
Identities = 51/198 (25%), Positives = 101/198 (51%), Gaps = 11/198 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++ G+ +VGKTS + F+ + F + Y+ T+G+DF +K + R V+LQ+WD AG
Sbjct: 19 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTM---YLEDRTVRLQLWDTAGL 75
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + Y ++S ++++D+TN SF+ +W D+ ++ + ++ +L+ +K
Sbjct: 76 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTER--GSDVII--MLVGNKT 131
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
DL D RQV I E E + N + +IE S+K ++ + + + R
Sbjct: 132 DLADKRQVSIEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAALP--GMESTQDRSR 188
Query: 422 KSSIRLSEETLRDDQPKK 439
+ I + E ++ +
Sbjct: 189 EDMIDIKLEKPQEQPVSE 206
Score = 73.9 bits (182), Expect = 2e-15
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 157 GRPYGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 214
G T P ++ G+ +VGKTS + F+ + F + Y+ T+G+DF +K +
Sbjct: 1 GPGMSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTM-- 58
Query: 215 KKYGGRPVKLQIWD 228
R V+LQ+WD
Sbjct: 59 -YLEDRTVRLQLWD 71
Score = 61.6 bits (150), Expect = 4e-11
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 101 RPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K++ +G+ +VGKTS + F+ + F + Y+ T+G+DF +K
Sbjct: 9 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSK 56
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 141 bits (359), Expect = 2e-40
Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 9/152 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ GDS VGKT F +F D + T+GVDF + + G +K+Q+WD AGQ
Sbjct: 23 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAV---DIDGERIKIQLWDTAGQ 79
Query: 303 DRY-ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
+R+ M + YY+N + ++D+TN SF S+ W + +P +L+ +K
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL---LANDIPRILVGNK 136
Query: 362 CDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
CDL QV + + ++ M E S+K
Sbjct: 137 CDLRSAIQVPTDLAQKFADTHS-MPLFETSAK 167
Score = 78.0 bits (193), Expect = 5e-17
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 156 GGRP--YGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 211
G +G+ P + S + I++ GDS VGKT F +F D + T+GVDF +
Sbjct: 2 GHHHHHHGSLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERA 61
Query: 212 LSHKKYGGRPVKLQIWD 228
+ G +K+Q+WD
Sbjct: 62 V---DIDGERIKIQLWD 75
Score = 64.5 bits (158), Expect = 3e-12
Identities = 20/61 (32%), Positives = 27/61 (44%)
Query: 90 SPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
G + KI+VIGDS VGKT F +F D + T+GVDF +
Sbjct: 2 GHHHHHHGSLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERA 61
Query: 150 L 150
+
Sbjct: 62 V 62
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 141 bits (358), Expect = 2e-40
Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 12/185 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
I I G +VGK+S FV+ +F+D+Y T+ F+ + G+ LQ+ D A
Sbjct: 7 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLI----TVNGQEYHLQLVDTA 62
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQD Y + Y + +G I+++ +T+ KSFE + L +P +L+ +
Sbjct: 63 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGN 119
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K DL R + E +A+ +N +++E S+KE+ D ++ ++M+
Sbjct: 120 KKDLHMERVISYEEGKALAESWN-AAFLESSAKENQTAVDVFRRIILEA---EKMDGACS 175
Query: 420 ERKSS 424
+ KSS
Sbjct: 176 QGKSS 180
Score = 58.3 bits (142), Expect = 3e-10
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
Q+ S I I G +VGK+S FV+ +F+D+Y T+ F+ + G+ LQ+
Sbjct: 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLI----TVNGQEYHLQL 58
Query: 227 WD 228
D
Sbjct: 59 VD 60
Score = 49.4 bits (119), Expect = 3e-07
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146
KI ++G +VGK+S FV+ +F+D+Y T+ F+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT 44
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 141 bits (358), Expect = 3e-40
Identities = 49/167 (29%), Positives = 91/167 (54%), Gaps = 9/167 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++ G+ +VGKTS + F+ + F + Y+ T+G+DF +K + R V+LQ+WD AGQ
Sbjct: 17 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTM---YLEDRTVRLQLWDTAGQ 73
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + Y ++S ++++D+TN SF +W D+ ++ G+ + +L+ +K
Sbjct: 74 ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER----GSDVIIMLVGNKT 129
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
DL D RQV E E + N + +IE S+K ++ + +
Sbjct: 130 DLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAAL 175
Score = 73.8 bits (182), Expect = 1e-15
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++ G+ +VGKTS + F+ + F + Y+ T+G+DF +K + R V+LQ+WD
Sbjct: 17 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTM---YLEDRTVRLQLWD 69
Score = 61.8 bits (151), Expect = 2e-11
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 101 RPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ K++ +G+ +VGKTS + F+ + F + Y+ T+G+DF +K
Sbjct: 7 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSK 54
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 142 bits (360), Expect = 4e-40
Identities = 47/199 (23%), Positives = 87/199 (43%), Gaps = 13/199 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGV-DFSTKLLSHKKYGGRPVKLQIWDIAG 301
I + GD VGKT+Y+ + +F NY TVG + L G +K +WD AG
Sbjct: 14 ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFL---DDQGNVIKFNVWDTAG 70
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
Q++ + VYY + G I+ FD+T+R + +++ +W + + G P ++ A+K
Sbjct: 71 QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV----GNEAPIVVCANK 126
Query: 362 CDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
D+ + +++ + V N + E+S+K L R + V
Sbjct: 127 IDIKNRQKISKKLVMEVLKGKN-YEYFEISAKTAHNFGLPFLHLARIFT--GRPDLIFVS 183
Query: 421 RKSSIRLSEETLRDDQPKK 439
++ +E P++
Sbjct: 184 -NVNLEPTEVNYDYHSPEE 201
Score = 67.0 bits (164), Expect = 5e-13
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 167 QTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGV-DFSTKLLSHKKYGGRPVK 223
+ I + GD VGKT+Y+ + +F NY TVG + L G +K
Sbjct: 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFL---DDQGNVIK 62
Query: 224 LQIWD 228
+WD
Sbjct: 63 FNVWD 67
Score = 56.2 bits (136), Expect = 2e-09
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGV-DFSTKLL 150
KI +IGD VGKT+Y+ + +F NY TVG + L
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFL 54
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 141 bits (357), Expect = 4e-40
Identities = 29/185 (15%), Positives = 68/185 (36%), Gaps = 17/185 (9%)
Query: 232 TLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 291
L Q P + I G+ + GK++ V ++ ++ G F ++ G+
Sbjct: 13 NLYF-QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEI----VVDGQS 66
Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA 351
L I D G + D + +F L + SF++V + L S
Sbjct: 67 YLLLIRDEGGPPEL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASE-- 119
Query: 352 MLPCLLLASKCDLP---DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+P +L+ ++ + R ++ + + ++ E + L +E + ++
Sbjct: 120 -VPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178
Query: 409 ICSKR 413
+ ++
Sbjct: 179 VALRK 183
Score = 57.2 bits (139), Expect = 6e-10
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
Q P + I G+ + GK++ V ++ ++ G F ++ G+ L I
Sbjct: 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEI----VVDGQSYLLLI 71
Query: 227 WD 228
D
Sbjct: 72 RD 73
Score = 48.7 bits (117), Expect = 6e-07
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146
LK+ ++G+ + GK++ V ++ ++ G F
Sbjct: 11 RENLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFK 57
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 141 bits (357), Expect = 5e-40
Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 9/158 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+ + GD+ VGK+S V FVQ+ F N T+G F TK + G K IWD AGQ
Sbjct: 26 VCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVP---CGNELHKFLIWDTAGQ 82
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ ++ +YY+ S +I++D+T + SF ++ +W +L ++ + +KC
Sbjct: 83 ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG--PENIVM--AIAGNKC 138
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
DL D R+V + + + +E S+K + IE+
Sbjct: 139 DLSDIREVPLKDAKEYAESIG-AIVVETSAKNAINIEE 175
Score = 75.3 bits (186), Expect = 5e-16
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 146 STKLLSHKKYGGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGV 205
S+ H G P G+ + + GD+ VGK+S V FVQ+ F N T+G
Sbjct: 3 SSHHHHHHSSGLVPRGSA----IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGA 58
Query: 206 DFSTKLLSHKKYGGRPVKLQIWD 228
F TK + G K IWD
Sbjct: 59 SFMTKTVP---CGNELHKFLIWD 78
Score = 62.6 bits (153), Expect = 1e-11
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 88 SPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147
S G PR S A LK+ ++GD+ VGK+S V FVQ+ F N T+G F T
Sbjct: 4 SHHHHHHSSGLVPRGS-AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMT 62
Query: 148 KLLS 151
K +
Sbjct: 63 KTVP 66
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 139 bits (354), Expect = 8e-40
Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 9/174 (5%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
+ + + GD+ VGK+S + FV++ F N T+G F TK + +Y K I
Sbjct: 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTV---QYQNELHKFLI 59
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
WD AG +R+ ++ +YY+ S II++D+T ++F ++ W +L ++
Sbjct: 60 WDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG--PPSIVV--A 115
Query: 357 LLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+ +KCDL D R+V + + + ++E S+K + I + + RI
Sbjct: 116 IAGNKCDLTDVREVMERDAKDYADSIH-AIFVETSAKNAININELFIEISRRIP 168
Score = 74.1 bits (183), Expect = 7e-16
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ + GD+ VGK+S + FV++ F N T+G F TK + +Y K IWD
Sbjct: 9 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTV---QYQNELHKFLIWD 61
Score = 61.7 bits (151), Expect = 1e-11
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
LK+ ++GD+ VGK+S + FV++ F N T+G F TK
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTK 46
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 139 bits (353), Expect = 1e-39
Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ G+S VGK++ F + ++ D + + V L ++DI
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIM---VDKEEVTLIVYDIW 59
Query: 301 GQDRY-ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
Q + Q D +I+F +T+R+SF V + L + + LP +L+
Sbjct: 60 EQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD---LPVILVG 116
Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
+K DL R+V + E + + IE S+ H + V R I +R
Sbjct: 117 NKSDLARSREVSLEEGRHLAGTLS-CKHIETSAALHHNTRELFEGAV-RQIRLRR 169
Score = 60.6 bits (148), Expect = 3e-11
Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ G+S VGK++ F + ++ D + + V L ++D
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIM---VDKEEVTLIVYD 57
Score = 54.8 bits (133), Expect = 4e-09
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
V K++++G+S VGK++ F + ++ D +
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYER 42
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 139 bits (353), Expect = 1e-39
Identities = 46/158 (29%), Positives = 88/158 (55%), Gaps = 9/158 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GD GK+S V FV+++F++ ++T+G F ++ L+ VK +IWD AGQ
Sbjct: 15 LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLA---VNDATVKFEIWDTAGQ 71
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+RY ++ +YY+ + II+FD+TN+ SFE +W +L ++ + L +K
Sbjct: 72 ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG----NPNMVMALAGNKS 127
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
DL D R+V + + + + ++E S+K +++
Sbjct: 128 DLLDARKVTAEDAQTYAQENG-LFFMETSAKTATNVKE 164
Score = 75.7 bits (187), Expect = 3e-16
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 161 GTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG 218
G+ + S +++ GD GK+S V FV+++F++ ++T+G F ++ L+
Sbjct: 1 GSMAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLA---VN 57
Query: 219 GRPVKLQIWD 228
VK +IWD
Sbjct: 58 DATVKFEIWD 67
Score = 63.3 bits (155), Expect = 5e-12
Identities = 14/52 (26%), Positives = 31/52 (59%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
+ K++++GD GK+S V FV+++F++ ++T+G F ++ L+
Sbjct: 4 AAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLA 55
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 140 bits (354), Expect = 1e-39
Identities = 41/180 (22%), Positives = 73/180 (40%), Gaps = 10/180 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ G+S VGK++ F + ++ D + + V L ++DI
Sbjct: 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRI---MVDKEEVTLVVYDIW 80
Query: 301 GQDRYICMSR-VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
Q R Q D +I+F +T+R+SF V + L + + LP +L+
Sbjct: 81 EQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD---LPVILVG 137
Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
+K DL R+V + E + + IE S+ H + V R I +R A
Sbjct: 138 NKSDLARSREVSLEEGRHLAGTLS-CKHIETSAALHHNTRELFEGAV-RQIRLRRGRNHA 195
Score = 63.8 bits (156), Expect = 5e-12
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 152 HKKYGGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 211
H GR F + + +++ G+S VGK++ F + ++ D +
Sbjct: 5 HHHSSGRENLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERR 64
Query: 212 LSHKKYGGRPVKLQIWD 228
+ V L ++D
Sbjct: 65 I---MVDKEEVTLVVYD 78
Score = 54.1 bits (131), Expect = 9e-09
Identities = 8/46 (17%), Positives = 21/46 (45%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ + K++++G+S VGK++ F + ++ D +
Sbjct: 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYER 63
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 138 bits (350), Expect = 3e-39
Identities = 44/158 (27%), Positives = 86/158 (54%), Gaps = 9/158 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +IWD AGQ
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTV---CLDDTTVKFEIWDTAGQ 65
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+RY ++ +YY+ + I+++D+TN +SF W +L + ++ L +K
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA--SPNIVI--ALSGNKA 121
Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
DL + R V+ E ++ + + ++E S+K + + +
Sbjct: 122 DLANKRAVDFQEAQSYADDNS-LLFMETSAKTSMNVNE 158
Score = 74.5 bits (184), Expect = 5e-16
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ G+S VGK+S V FV+ +F + ++T+G F T+ + VK +IWD
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTV---CLDDTTVKFEIWD 61
Score = 61.8 bits (151), Expect = 1e-11
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
K++++G+S VGK+S V FV+ +F + ++T+G F T+ +
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC 49
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 138 bits (350), Expect = 3e-39
Identities = 40/170 (23%), Positives = 81/170 (47%), Gaps = 10/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y + + G VGK+S V FV+ F ++Y TV + + LQI D
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVI----SCDKSICTLQITDTT 59
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHD-LDSKCILDNGAMLPCLLLA 359
G ++ M R+ I+++ +T+R+S E + + K +++ +P +L+
Sbjct: 60 GSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES---IPIMLVG 116
Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+KCD R+V+ +E EA+ + +++E S+K + +++ L++
Sbjct: 117 NKCDESPSREVQSSEAEALARTWK-CAFMETSAKLNHNVKELFQELLNLE 165
Score = 59.1 bits (144), Expect = 1e-10
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
Y + + G VGK+S V FV+ F ++Y TV + + LQI D
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVI----SCDKSICTLQITD 57
Score = 51.4 bits (124), Expect = 5e-08
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
++ V G VGK+S V FV+ F ++Y TV + +
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVI 44
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 137 bits (348), Expect = 8e-39
Identities = 49/187 (26%), Positives = 93/187 (49%), Gaps = 10/187 (5%)
Query: 232 TLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 291
++ P T+ +++ G VGK++ F+Q+ F+ +Y T+ D TK+ G P
Sbjct: 1 SMDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKIC---SVDGIP 56
Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA 351
+L I D AGQ+ + M Y + G +++F + +R+SF V + + D+
Sbjct: 57 ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD-- 114
Query: 352 MLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
P +L+ +K DL RQV +E A ++ +++ E S+K L ++++ LV R +
Sbjct: 115 -FPVVLVGNKADLESQRQVPRSEASAFGASHH-VAYFEASAKLRLNVDEAFEQLV-RAVR 171
Query: 411 SKRMEEE 417
+ +E
Sbjct: 172 KYQEQEL 178
Score = 57.5 bits (140), Expect = 5e-10
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 162 TFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 221
+ P + ++ +++ G VGK++ F+Q+ F+ +Y T+ D TK+ G P
Sbjct: 1 SMDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKIC---SVDGIP 56
Query: 222 VKLQIWD 228
+L I D
Sbjct: 57 ARLDILD 63
Score = 46.4 bits (111), Expect = 3e-06
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
K++V+G VGK++ F+Q+ F+ +Y T+ D TK
Sbjct: 11 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTK 48
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 138 bits (349), Expect = 1e-38
Identities = 42/186 (22%), Positives = 83/186 (44%), Gaps = 11/186 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
++I G VGKTS FV+ +F + Y TV +S + G L + D A
Sbjct: 25 RKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIV----TLGKDEFHLHLVDTA 80
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQD Y + + G ++++ +T+ SF+ + L +P +L+ +
Sbjct: 81 GQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR---VPVVLVGN 137
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
K DL P+R+V+ E + + + +++E S++E+ + + ++ I +
Sbjct: 138 KADLSPEREVQAVEGKKLAESWG-ATFMESSARENQLTQGIFTKVIQEIA--RVENSYGQ 194
Query: 420 ERKSSI 425
ER+ +
Sbjct: 195 ERRCHL 200
Score = 59.1 bits (144), Expect = 2e-10
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 157 GRPYGTFSPIQTP-SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 215
GR F + ++I G VGKTS FV+ +F + Y TV +S +
Sbjct: 10 GRENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIV---- 65
Query: 216 KYGGRPVKLQIWD 228
G L + D
Sbjct: 66 TLGKDEFHLHLVD 78
Score = 50.3 bits (121), Expect = 2e-07
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146
K++++G VGKTS FV+ +F + Y TV +S
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS 62
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 136 bits (346), Expect = 1e-38
Identities = 38/169 (22%), Positives = 84/169 (49%), Gaps = 8/169 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +++ G VGK++ FVQ F++ Y T+ + ++ + + L+I D A
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV----EVDCQQCMLEILDTA 59
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +++ M +Y +N G +++ +T + +F + + + ++ +P +L+ +
Sbjct: 60 GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED---VPMILVGN 116
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
KCDL D R V + + + Q+ +++E S+K + + + LV +I
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
Score = 56.7 bits (138), Expect = 8e-10
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
Y +++ G VGK++ FVQ F++ Y T+ + ++ + + L+I D
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV----EVDCQQCMLEILD 57
Score = 49.8 bits (120), Expect = 2e-07
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146
K++V+G VGK++ FVQ F++ Y T+ +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR 41
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 136 bits (345), Expect = 1e-38
Identities = 42/172 (24%), Positives = 89/172 (51%), Gaps = 9/172 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ + +++ G VGK++ F+ ++F+++Y+ T + K+ G V++ I
Sbjct: 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV----VLDGEEVQIDIL 57
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+ Y + Y+++ +G + +F +T +SF + ++ + +N +P LL
Sbjct: 58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN---VPFLL 114
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ +K DL D RQV + E + Q+N ++++E S+K ++ L+ I
Sbjct: 115 VGNKSDLEDKRQVSVEEAKNRADQWN-VNYVETSAKTRANVDKVFFDLMREI 165
Score = 58.6 bits (143), Expect = 2e-10
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ G VGK++ F+ ++F+++Y+ T + K+ G V++ I D
Sbjct: 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV----VLDGEEVQIDILD 58
Score = 50.6 bits (122), Expect = 1e-07
Identities = 10/40 (25%), Positives = 25/40 (62%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
K++++G VGK++ F+ ++F+++Y+ T + K+
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV 45
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 136 bits (346), Expect = 2e-38
Identities = 45/177 (25%), Positives = 95/177 (53%), Gaps = 10/177 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ G VGK++ F+ ++F+++Y+ T + K+ G V++ I D A
Sbjct: 19 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV----VLDGEEVQIDILDTA 74
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+ Y + Y+++ +G + +F +T +SF + ++ + +N +P LL+ +
Sbjct: 75 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN---VPFLLVGN 131
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
K DL D RQV + E + Q+N ++++E S+K ++ L+ R I +++ME+
Sbjct: 132 KSDLEDKRQVSVEEAKNRAEQWN-VNYVETSAKTRANVDKVFFDLM-REIRARKMED 186
Score = 59.1 bits (144), Expect = 2e-10
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 156 GGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 215
G G S + +++ G VGK++ F+ ++F+++Y+ T + K+
Sbjct: 4 GISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV---- 59
Query: 216 KYGGRPVKLQIWD 228
G V++ I D
Sbjct: 60 VLDGEEVQIDILD 72
Score = 50.2 bits (121), Expect = 2e-07
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 90 SPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
SP S G + S A K++++G VGK++ F+ ++F+++Y+ T + K+
Sbjct: 2 SPGISGGGGGSQNSLAL--HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV 59
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 136 bits (346), Expect = 3e-38
Identities = 45/189 (23%), Positives = 95/189 (50%), Gaps = 11/189 (5%)
Query: 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
+ +++ G VGK++ F+ ++F+++Y+ T + K+ G V++ I D
Sbjct: 13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV----VLDGEEVQIDILD 68
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
AGQ+ Y + Y+++ +G + +F +T +SF + ++ + +N +P LL+
Sbjct: 69 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN---VPFLLV 125
Query: 359 ASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
+K DL D RQV + E + Q+N ++++E S+K ++ L+ I R E+
Sbjct: 126 GNKSDLEDKRQVSVEEAKNRAEQWN-VNYVETSAKTRANVDKVFFDLMREIR--ARKMED 182
Query: 418 AVERKSSIR 426
+ E+ +
Sbjct: 183 SKEKNGKKK 191
Score = 57.6 bits (140), Expect = 7e-10
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ +++ G VGK++ F+ ++F+++Y+ T + K+ G V++ I D
Sbjct: 15 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV----VLDGEEVQIDILD 68
Score = 51.5 bits (124), Expect = 8e-08
Identities = 11/51 (21%), Positives = 31/51 (60%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
+P+ ++ + K++++G VGK++ F+ ++F+++Y+ T + K+
Sbjct: 5 KPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV 55
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 135 bits (341), Expect = 1e-37
Identities = 48/237 (20%), Positives = 92/237 (38%), Gaps = 43/237 (18%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCT 232
++ G+S+VGK+S V ++ F +N T+G F T +++ +K +
Sbjct: 10 TVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVN---LNDINIKNNSNNEKNN 66
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
++IT + +
Sbjct: 67 NINSINDDNNVIITNQHNNYNEN---------------------------------LCNI 93
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
K IWD AGQ+RY + +YY+ + I++FD++N + + W + L +
Sbjct: 94 KFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKI------SSN 147
Query: 353 LPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
+L+A+K D QV+I E++ N + +I+ S+K I++ L + I
Sbjct: 148 YIIILVANKIDKNKFQVDILEVQKYAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEIY 203
Score = 63.7 bits (155), Expect = 6e-12
Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 28/121 (23%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ 167
K +++G+S+VGK+S V ++ F +N T+G F T ++ +
Sbjct: 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVV--------------NLN 52
Query: 168 TPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 227
+ N N T ++ +K IW
Sbjct: 53 --------------DINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIW 98
Query: 228 D 228
D
Sbjct: 99 D 99
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 134 bits (340), Expect = 1e-37
Identities = 49/179 (27%), Positives = 93/179 (51%), Gaps = 10/179 (5%)
Query: 232 TLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 291
+ +PTY +++ GD VGK++ F Q F+D+Y T+ D K + +
Sbjct: 10 AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHT---EIDNQW 65
Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA 351
L + D AGQ+ + M Y + DG +I++ +T++ SFE V ++ + ++
Sbjct: 66 AILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES-- 123
Query: 352 MLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKE-HLMIEDSMNFLVDRI 408
P +L+A+K DL R+V ++ + + +YN + +IE S+K+ L ++ + + LV I
Sbjct: 124 -FPMILVANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVI 180
Score = 56.4 bits (137), Expect = 1e-09
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 156 GGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 215
G P+Y +++ GD VGK++ F Q F+D+Y T+ D K
Sbjct: 4 GSMATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHT--- 59
Query: 216 KYGGRPVKLQIWD 228
+ + L + D
Sbjct: 60 EIDNQWAILDVLD 72
Score = 47.9 bits (115), Expect = 1e-06
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
PS+ K++V+GD VGK++ F Q F+D+Y T+ D K
Sbjct: 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLK 57
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 133 bits (337), Expect = 2e-37
Identities = 42/169 (24%), Positives = 86/169 (50%), Gaps = 9/169 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +++ G VGK++ FV F++ Y T+ DF K + + P L+I D A
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEI---EVDSSPSVLEILDTA 59
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +++ M +Y +N G I+++ L N++SF+ + + + + +P +L+ +
Sbjct: 60 GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK---VPVILVGN 116
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
K DL R+V +E A+ ++ ++E S+K M+++ +V ++
Sbjct: 117 KVDLESEREVSSSEGRALAEEWG-CPFMETSAKSKTMVDELFAEIVRQM 164
Score = 54.8 bits (133), Expect = 3e-09
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
Y +++ G VGK++ FV F++ Y T+ DF K + + P L+I D
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEI---EVDSSPSVLEILD 57
Score = 47.1 bits (113), Expect = 1e-06
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
K++V+G VGK++ FV F++ Y T+ DF K
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRK 42
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 129 bits (325), Expect = 8e-36
Identities = 45/175 (25%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ + +++ G++ VGK+S V FV N F +N + T+G F T+ ++ VK +IW
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVT---INEHTVKFEIW 57
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+R+ ++ YY+N+ ++++D+T +SF W +L + + L
Sbjct: 58 DTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA----SKDIIIAL 113
Query: 358 LASKCDLPD----RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ +K D R+V E E + + + + E S+K + D + ++I
Sbjct: 114 VGNKIDXLQEGGERKVAREEGEKLAEEKG-LLFFETSAKTGENVNDVFLGIGEKI 167
Score = 74.8 bits (184), Expect = 4e-16
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ G++ VGK+S V FV N F +N + T+G F T+ ++ VK +IWD
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVT---INEHTVKFEIWD 58
Score = 62.1 bits (151), Expect = 1e-11
Identities = 16/42 (38%), Positives = 29/42 (69%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
K++++G++ VGK+S V FV N F +N + T+G F T+ ++
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVT 46
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 128 bits (325), Expect = 1e-35
Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 13/181 (7%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +++ GD VGKTS F + D + +G D + L G L + D
Sbjct: 5 YRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTL---TVDGEDTTLVVVDTW 60
Query: 301 GQDR--YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
++ Q +I++ + +R SFES + + L D+ +P +L+
Sbjct: 61 EAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADH---VPIILV 117
Query: 359 ASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
+K DL R+V + E A ++ +IE S+ + + +V ++ R +
Sbjct: 118 GNKADLARCREVSVEEGRACAVVFD-CKFIETSATLQHNVAELFEGVVRQLR--LRRRDS 174
Query: 418 A 418
A
Sbjct: 175 A 175
Score = 54.1 bits (131), Expect = 7e-09
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
Y +++ GD VGKTS F + D + +G D + L G L + D
Sbjct: 5 YRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTL---TVDGEDTTLVVVD 58
Score = 46.4 bits (111), Expect = 3e-06
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+++++GD VGKTS F + D + +G D +
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYER 43
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 128 bits (325), Expect = 2e-35
Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 12/182 (6%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
+ + I G + VGK++ V F+ +F+ Y T+ + + V ++I
Sbjct: 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA----TIDDEVVSMEI 80
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
D AGQ+ I + + +G ++++D+T+R SFE V+ K+ LD N + +
Sbjct: 81 LDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN---VTLI 136
Query: 357 LLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKE-HLMIEDSMNFLVDRIICSKRM 414
L+ +K DL RQV E E + + ++ E S+ I + L R + +RM
Sbjct: 137 LVGNKADLDHSRQVSTEEGEKLATELA-CAFYECSACTGEGNITEIFYELC-REVRRRRM 194
Query: 415 EE 416
+
Sbjct: 195 VQ 196
Score = 55.3 bits (134), Expect = 4e-09
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
++ + I G + VGK++ V F+ +F+ Y T+ + + V ++I
Sbjct: 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA----TIDDEVVSMEI 80
Query: 227 WD 228
D
Sbjct: 81 LD 82
Score = 49.9 bits (120), Expect = 2e-07
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 85 KSNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD 144
S+ + F+ AE +K+ + G + VGK++ V F+ +F+ Y T+
Sbjct: 7 HSSGVDLGTENLYFQSMAKSAE--VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLEST 64
Query: 145 FS 146
+
Sbjct: 65 YR 66
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 128 bits (324), Expect = 2e-35
Identities = 29/185 (15%), Positives = 78/185 (42%), Gaps = 15/185 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLD--NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
++I G++ GKT+ +Q ++ K D TVG+D + + R + L +WD A
Sbjct: 5 LMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFA 64
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKS-FESVVQWKHDLDSKCILDNGAMLPCLLLA 359
G++ + + + ++DL+ ++ +++ W ++ ++ + P +L+
Sbjct: 65 GREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSS---PVILVG 119
Query: 360 SKCDLPD----RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI---ICSK 412
+ D+ D + + + ++ F + + D++ L I +
Sbjct: 120 THLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179
Query: 413 RMEEE 417
++ ++
Sbjct: 180 KIRDQ 184
Score = 69.7 bits (171), Expect = 3e-14
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLD--NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++I G++ GKT+ +Q ++ K D TVG+D + + R + L +WD
Sbjct: 5 LMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Score = 56.2 bits (136), Expect = 2e-09
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLD--NYKNTVGVDFSTKLL 150
+K++++G++ GKT+ +Q ++ K D TVG+D +
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPI 46
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 126 bits (320), Expect = 6e-35
Identities = 32/183 (17%), Positives = 67/183 (36%), Gaps = 13/183 (7%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
IP + + GD+ GK+S + F+ + + T + K + G+ + I
Sbjct: 4 SIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQY-KKEML---VDGQTHLVLI 58
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM-LPC 355
+ AG + +D I +F L + SF++V + L S G + L
Sbjct: 59 REEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALAL 113
Query: 356 LLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
+ + R V A+ S+ E + L ++ + + + + R
Sbjct: 114 VGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVA-QKVVTLRK 172
Query: 415 EEE 417
+++
Sbjct: 173 QQQ 175
Score = 55.3 bits (134), Expect = 3e-09
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
P + + GD+ GK+S + F+ + + T + K + G+ + I +
Sbjct: 6 PELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQY-KKEML---VDGQTHLVLIRE 60
Score = 48.0 bits (115), Expect = 8e-07
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
L++ V+GD+ GK+S + F+ + + T +
Sbjct: 6 PELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQY 43
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 127 bits (321), Expect = 7e-35
Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 8/156 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I G GK++ F+ +F+ Y + +S++ +PV L++ D A
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE----TVDHQPVHLRVMDTA 77
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
D R Y + ++++ + +R+SF+S + L + +P LLL +
Sbjct: 78 DLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALH-AKETQRSIPALLLGN 135
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL 395
K D+ RQV E A+ ++ + EVS+
Sbjct: 136 KLDMAQYRQVTKAEGVALAGRFG-CLFFEVSACLDF 170
Score = 53.0 bits (128), Expect = 2e-08
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ I G GK++ F+ +F+ Y + +S++ +PV L++ D
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE----TVDHQPVHLRVMD 75
Score = 48.3 bits (116), Expect = 8e-07
Identities = 9/53 (16%), Positives = 22/53 (41%)
Query: 97 GFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
G E + + ++G GK++ F+ +F+ Y + +S++
Sbjct: 10 GRENLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE 62
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 123 bits (312), Expect = 8e-34
Identities = 39/174 (22%), Positives = 73/174 (41%), Gaps = 11/174 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ G VGK++ + F G + + G L ++DI
Sbjct: 3 YKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYDRSI----VVDGEEASLMVYDIW 57
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
QD + D +I++ +T++ SFE + + L D+ +P +L+ +
Sbjct: 58 EQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD---VPIILVGN 114
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K DL R+V ++E A ++ +IE S+ H ++ +V R I +R
Sbjct: 115 KSDLVRSREVSVDEGRACAVVFD-CKFIETSAALHHNVQALFEGVV-RQIRLRR 166
Score = 47.1 bits (113), Expect = 2e-06
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
Y +L+ G VGK++ + F G + + G L ++D
Sbjct: 3 YKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYDRSI----VVDGEEASLMVYD 55
Score = 41.3 bits (98), Expect = 1e-04
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146
+V K+L++G VGK++ + F G +
Sbjct: 1 SVYKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYD 39
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 118 bits (297), Expect = 2e-31
Identities = 39/188 (20%), Positives = 85/188 (45%), Gaps = 9/188 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYK-NTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
Y +++ G+ VGK++ F + +G D + L + L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
G++ + + Q D +I++ +T+R SFE + + L ++ +P +L+
Sbjct: 67 KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED---IPIILVG 121
Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
+K DL R+V ++E A ++ +IE S+ +++ +V R + +R +E
Sbjct: 122 NKSDLVRXREVSVSEGRAXAVVFDXK-FIETSAAVQHNVKELFEGIV-RQVRLRRDSKEK 179
Query: 419 VERKSSIR 426
ER+ + +
Sbjct: 180 NERRLAYQ 187
Score = 43.8 bits (104), Expect = 3e-05
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYK-NTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
Y +++ G+ VGK++ F + +G D + L + L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Score = 41.1 bits (97), Expect = 2e-04
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYK-NTVGVDFSTK 148
++++IG+ VGK++ F + +G D +
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYER 47
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 122 bits (308), Expect = 2e-30
Identities = 33/215 (15%), Positives = 73/215 (33%), Gaps = 16/215 (7%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-----GRPVKLQIW 297
+ + GD GKTS ++ + F T G++ TK + K + W
Sbjct: 44 VHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFW 103
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D GQ+ + + S +++ D + + W ++ P ++
Sbjct: 104 DFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYG--GKS---PVIV 155
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
+ +K D +E +I + +S K +E L ++ +
Sbjct: 156 VMNKIDENPSYNIEQKKINERFPAIE-NRFHRISCKNGDGVESIAKSLKSAVLHPDSIYG 214
Query: 417 EAVERKSSIRLSEETLRDDQPKKLVPADKVSTYCW 451
+ S I++ E+ + ++ + +V C
Sbjct: 215 TPLAP-SWIKVKEKLVEATTAQRYLNRTEVEKICN 248
Score = 57.3 bits (138), Expect = 5e-09
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 10/73 (13%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-----GRPVKLQIW 227
+ + GD GKTS ++ + F T G++ TK + K + W
Sbjct: 44 VHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFW 103
Query: 228 D-----IYCTLSP 235
D I
Sbjct: 104 DFGGQEIMHASHQ 116
Score = 49.6 bits (118), Expect = 1e-06
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 159
+K+ +IGD GKTS ++ + F T G++ TK + K
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLEND 92
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 112 bits (283), Expect = 3e-29
Identities = 38/180 (21%), Positives = 82/180 (45%), Gaps = 11/180 (6%)
Query: 241 YPILITGDSTVGKTSYVQGF--VQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
Y +++ G+ VGK++ F V + + +G D + L + L +W+
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWE 96
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
G++ + + Q D +I++ +T+R SFE + + L ++ +P +L+
Sbjct: 97 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED---IPIILV 151
Query: 359 ASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
+K DL R+V ++E A ++ +IE S+ +++ +V R + +R +E
Sbjct: 152 GNKSDLVRCREVSVSEGRACAVVFD-CKFIETSAAVQHNVKELFEGIV-RQVRLRRDSKE 209
Score = 40.4 bits (95), Expect = 5e-04
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 171 YLILITGDSTVGKTSYVQGF--VQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
Y +++ G+ VGK++ F V + + +G D + L + L +W+
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWE 96
Score = 39.6 bits (93), Expect = 8e-04
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 72 HKHINALPARELCKSNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGF--V 129
H H + +L N S T ++++IG+ VGK++ F V
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMSTDS-VISSESGNTYYRVVLIGEQGVGKSTLANIFAGV 60
Query: 130 QNKFLDNYKNTVGVDFSTK 148
+ + +G D +
Sbjct: 61 HDSMDSDC-EVLGEDTYER 78
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 107 bits (269), Expect = 2e-27
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 13/154 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ GD VGKT + F + + Y TV +FS + KY L +WD AGQ
Sbjct: 26 IVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVM----KYKNEEFILHLWDTAGQ 81
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y +SD ++ F + NR SF+++ +W+ ++ D +L+ K
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI--DT---AKTVLVGLK 136
Query: 362 CDL---PDRQVEINEIEAVCHQYNFMSWIEVSSK 392
DL V E + +C + +++IE SS
Sbjct: 137 VDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSV 170
Score = 54.3 bits (131), Expect = 9e-09
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 86 SNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
SN+ + + + + + LKI+V+GD VGKT + F + + Y TV +F
Sbjct: 1 SNAMLAFSDMNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF 60
Query: 146 STKLLSHKKYGGRPY 160
S + KY +
Sbjct: 61 SHVM----KYKNEEF 71
Score = 53.5 bits (129), Expect = 1e-08
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
I++ GD VGKT + F + + Y TV +FS + KY L +WD
Sbjct: 26 IVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVM----KYKNEEFILHLWD 77
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 103 bits (258), Expect = 5e-26
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 21/162 (12%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+ GD VGKT + + N F +Y TV +FS + G V L +WD AGQ
Sbjct: 11 CVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA----NVVVNGATVNLGLWDTAGQ 66
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y+ +D I+ F L ++ S+E+V +W +L +P +L+ +K
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----PGVPIVLVGTK 121
Query: 362 CDLPDRQ-----------VEINEIEAVCHQYNFMSWIEVSSK 392
DL D + + + E + ++IE SSK
Sbjct: 122 LDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163
Score = 53.1 bits (128), Expect = 2e-08
Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 11/97 (11%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
+ GD VGKT + + N F +Y TV +FS + G V L +WD
Sbjct: 11 CVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA----NVVVNGATVNLGLWDTAGQ 66
Query: 230 --YCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNK 264
Y L P+ + I S + K SY V K
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYE--NVSKK 101
Score = 45.0 bits (107), Expect = 9e-06
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K + +GD VGKT + + N F +Y TV +FS + G
Sbjct: 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA----NVVVNGATV 56
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 101 bits (253), Expect = 5e-25
Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 19/192 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+ GD VGKT + + NKF +Y TV +FS + G+ V L +WD AGQ
Sbjct: 12 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV----AVDGQIVNLGLWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y+ +D ++ F L ++ S+E+V+ +W +L N +P +L+ +K
Sbjct: 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA--PN---VPIVLVGTK 122
Query: 362 CDLPD---------RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
DL D + + E + Q ++IE SSK ++ + + ++
Sbjct: 123 LDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182
Query: 413 RMEEEAVERKSS 424
R +E RK+
Sbjct: 183 RRKEVPRRRKNH 194
Score = 48.1 bits (115), Expect = 1e-06
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ GD VGKT + + NKF +Y TV +FS + G+ V L +WD
Sbjct: 12 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV----AVDGQIVNLGLWD 63
Score = 42.0 bits (99), Expect = 1e-04
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K + +GD VGKT + + NKF +Y TV +FS + G+
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV----AVDGQIV 57
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 100 bits (251), Expect = 7e-25
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 23/164 (14%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++ GD VGKT + + N F Y TV ++S + G+PV L +WD AGQ
Sbjct: 33 CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA----NVMVDGKPVNLGLWDTAGQ 88
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y +D +I F L + SFE+V +W ++ C P +L+ +K
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTK 143
Query: 362 CDLPD-------------RQVEINEIEAVCHQYNFMSWIEVSSK 392
DL D + + A+ + + ++E S+
Sbjct: 144 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187
Score = 52.5 bits (126), Expect = 4e-08
Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 12/113 (10%)
Query: 152 HKKYGGRPYGTFS---PIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 208
H G P G+ Q + ++ GD VGKT + + N F Y TV ++S
Sbjct: 9 HHSSGLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS 68
Query: 209 TKLLSHKKYGGRPVKLQIWDI-----YCTLSPIQIPTYPILITGDSTVGKTSY 256
+ G+PV L +WD Y L P+ P + + S V S+
Sbjct: 69 A----NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 117
Score = 45.1 bits (107), Expect = 1e-05
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 97 GFEPRPSDAETV------LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
G PR S E + +K +V+GD VGKT + + N F Y TV ++S
Sbjct: 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA--- 69
Query: 151 SHKKYGGRPY 160
+ G+P
Sbjct: 70 -NVMVDGKPV 78
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 100 bits (251), Expect = 7e-25
Identities = 37/164 (22%), Positives = 77/164 (46%), Gaps = 23/164 (14%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GD GKT + F +++F + Y TV ++ + + G+ V+L +WD AGQ
Sbjct: 28 LVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 83
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y ++D ++ F + + S E++ +W ++ C +P +L+A+K
Sbjct: 84 EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-----PNVPIILVANK 138
Query: 362 CDLPD-------------RQVEINEIEAVCHQYNFMSWIEVSSK 392
DL V ++ A+ + ++E S+K
Sbjct: 139 KDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 182
Score = 50.1 bits (120), Expect = 3e-07
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ GD GKT + F +++F + Y TV ++ + + G+ V+L +WD
Sbjct: 28 LVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI----EVDGKQVELALWD 79
Score = 42.4 bits (100), Expect = 1e-04
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
K++V+GD GKT + F +++F + Y TV ++ + + G+
Sbjct: 26 KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI----EVDGKQV 73
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 99.8 bits (249), Expect = 1e-24
Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 23/165 (13%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ GDS GKT+ + F ++ F +NY TV +++ + + ++L +WD +G
Sbjct: 10 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA----SFEIDTQRIELSLWDTSGS 65
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
Y + + Y +SD +I FD++ ++ +SV+ +WK ++ C LL+ K
Sbjct: 66 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-----PNTKMLLVGCK 120
Query: 362 CDLPD-------------RQVEINEIEAVCHQYNFMSWIEVSSKE 393
DL V ++ + Q ++IE S+ +
Sbjct: 121 SDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 165
Score = 50.1 bits (120), Expect = 2e-07
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
I++ GDS GKT+ + F ++ F +NY TV +++ + + ++L +WD
Sbjct: 10 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA----SFEIDTQRIELSLWDTSGS 65
Query: 230 --YCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFL 266
Y + P+ P ++ + V K+
Sbjct: 66 PYYDNVRPLSYPDSDAVLICFDISRPETLDS--VLKKWK 102
Score = 42.4 bits (100), Expect = 7e-05
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
KI+V+GDS GKT+ + F ++ F +NY TV +++ + +
Sbjct: 8 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA----SFEIDTQRI 55
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 99.8 bits (249), Expect = 2e-24
Identities = 41/176 (23%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 232 TLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 291
+ P Q I++ GDS GKT+ + F ++ F +NY TV +++ + +
Sbjct: 20 HMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA----SFEIDTQR 75
Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNG 350
++L +WD +G Y + + Y +SD +I FD++ ++ +SV+ +WK ++ C
Sbjct: 76 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC----- 130
Query: 351 AMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFMSWIEVSSKE 393
LL+ K DL V ++ + Q ++IE S+ +
Sbjct: 131 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 186
Score = 52.1 bits (125), Expect = 6e-08
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 146 STKLLSHKKYGGRPYGT-FSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG 204
S+ H G P G+ P Q I++ GDS GKT+ + F ++ F +NY TV
Sbjct: 3 SSHHHHHHSSGLVPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF 62
Query: 205 VDFSTKLLSHKKYGGRPVKLQIWD 228
+++ + + ++L +WD
Sbjct: 63 ENYTA----SFEIDTQRIELSLWD 82
Score = 43.2 bits (102), Expect = 5e-05
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 97 GFEPRPSDAETV----LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152
G PR S + KI+V+GDS GKT+ + F ++ F +NY TV +++
Sbjct: 13 GLVPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA----S 68
Query: 153 KKYGGRPY 160
+ +
Sbjct: 69 FEIDTQRI 76
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 99.1 bits (247), Expect = 2e-24
Identities = 38/173 (21%), Positives = 77/173 (44%), Gaps = 23/173 (13%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
S + ++I GD GKT + F +++F + Y TV ++ + G+ V+
Sbjct: 19 SHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA----DIEVDGKQVE 74
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAM 352
L +WD AGQ+ Y + + Y ++D ++ F + + S E++ +W ++ C
Sbjct: 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PN 129
Query: 353 LPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFMSWIEVSSK 392
+P +L+ +K DL V E + ++ + ++E S+K
Sbjct: 130 VPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182
Score = 50.1 bits (120), Expect = 2e-07
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 151 SHKKYGGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 210
H G P G S + ++I GD GKT + F +++F + Y TV ++
Sbjct: 8 HHHSSGLVPRG--SHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA- 64
Query: 211 LLSHKKYGGRPVKLQIWD 228
+ G+ V+L +WD
Sbjct: 65 ---DIEVDGKQVELALWD 79
Score = 44.7 bits (106), Expect = 2e-05
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 97 GFEPRPSD-AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
G PR S A K++++GD GKT + F +++F + Y TV ++ +
Sbjct: 13 GLVPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA----DIEV 68
Query: 156 GGRPY 160
G+
Sbjct: 69 DGKQV 73
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 98.3 bits (245), Expect = 4e-24
Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 23/171 (13%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++ GD VGKTS V + N + Y T +FS GRPV+LQ+ D AGQ
Sbjct: 23 CVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSA----VVSVDGRPVRLQLCDTAGQ 78
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
D + + + Y N+D ++ F + + SF++V +W ++ C P +L+ ++
Sbjct: 79 DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PK---APIILVGTQ 133
Query: 362 CDLPD-------------RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
DL + + V + + + S+IE S+ +++
Sbjct: 134 SDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKE 184
Score = 49.3 bits (118), Expect = 5e-07
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
+ ++ GD VGKTS V + N + Y T +FS GRPV+LQ+
Sbjct: 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSA----VVSVDGRPVRLQL 72
Query: 227 WD 228
D
Sbjct: 73 CD 74
Score = 44.7 bits (106), Expect = 2e-05
Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 88 SPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147
S P G +K +++GD VGKTS V + N + Y T +FS
Sbjct: 1 SMGPGEP-GGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSA 59
Query: 148 KLLSHKKYGGRPY 160
GRP
Sbjct: 60 ----VVSVDGRPV 68
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 98.4 bits (245), Expect = 5e-24
Identities = 32/164 (19%), Positives = 71/164 (43%), Gaps = 23/164 (14%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GD GKT+ +Q ++ + + Y TV +++ + + V+L +WD +G
Sbjct: 30 LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA----CLETEEQRVELSLWDTSGS 85
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
Y + + Y +SD ++ FD++ ++ +S + +W+ ++ C LL+ K
Sbjct: 86 PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-----PSTRVLLIGCK 140
Query: 362 CDLPD-------------RQVEINEIEAVCHQYNFMSWIEVSSK 392
DL + + A+ Q ++E S+
Sbjct: 141 TDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF 184
Score = 49.9 bits (119), Expect = 3e-07
Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
+++ GD GKT+ +Q ++ + + Y TV +++ + + V+L +WD
Sbjct: 30 LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA----CLETEEQRVELSLWDTSGS 85
Query: 230 --YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y + P+ ++ +
Sbjct: 86 PYYDNVRPLCYSDSDAVLLCFDISRPETV 114
Score = 43.7 bits (103), Expect = 3e-05
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
P K++++GD GKT+ +Q ++ + + Y TV +++ + +
Sbjct: 21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA----CLETEEQRV 75
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 98.3 bits (245), Expect = 6e-24
Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 23/164 (14%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ GD GKTS + F F ++Y TV + + + G+PV L IWD AGQ
Sbjct: 37 VVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV----NLQVKGKPVHLHIWDTAGQ 92
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
D Y + ++Y ++ ++ FD+T+ SF+++ +W +++ C +P +++ K
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-----KKVPIIVVGCK 147
Query: 362 CDLPD-------------RQVEINEIEAVCHQYNFMSWIEVSSK 392
DL V + + + ++++E S++
Sbjct: 148 TDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR 191
Score = 49.8 bits (119), Expect = 4e-07
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+++ GD GKTS + F F ++Y TV + + + G+PV L IWD
Sbjct: 37 VVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV----NLQVKGKPVHLHIWD 88
Score = 42.4 bits (100), Expect = 9e-05
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K++++GD GKTS + F F ++Y TV + + + G+P
Sbjct: 35 VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV----NLQVKGKPV 82
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 96.4 bits (240), Expect = 1e-23
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 23/164 (14%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++ GD VGKT + + N F Y TV ++S + G+PV L +WD AGQ
Sbjct: 8 CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA----NVMVDGKPVNLGLWDTAGQ 63
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y +D +I F L + SFE+V +W ++ C P +L+ +K
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTK 118
Query: 362 CDLPD-------------RQVEINEIEAVCHQYNFMSWIEVSSK 392
DL D + + A+ + + ++E S+
Sbjct: 119 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 162
Score = 48.6 bits (116), Expect = 7e-07
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
++ GD VGKT + + N F Y TV ++S + G+PV L +WD
Sbjct: 8 CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA----NVMVDGKPVNLGLWDTAGQ 63
Query: 230 --YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASF 92
Score = 41.3 bits (97), Expect = 2e-04
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+ +K +V+GD VGKT + + N F Y TV ++S + G+P
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA----NVMVDGKPV 53
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 94.1 bits (234), Expect = 1e-22
Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 23/166 (13%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++ GD VGKT + + + F + Y TV ++ GG+ L ++D AGQ
Sbjct: 21 CVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV----SVTVGGKQYLLGLYDTAGQ 76
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
+ Y + + Y +D +I F + N SF++V +W +L N +P LL+ ++
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA--PN---VPFLLIGTQ 131
Query: 362 CDLPDRQ-------------VEINEIEAVCHQYNFMSWIEVSSKEH 394
DL D + + + + + + ++E S+
Sbjct: 132 IDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQ 177
Score = 50.2 bits (120), Expect = 2e-07
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
++ GD VGKT + + + F + Y TV ++ GG+ L ++D
Sbjct: 21 CVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV----SVTVGGKQYLLGLYDTAGQ 76
Query: 230 --YCTLSPIQIPTYPILITGDSTVGKTSY 256
Y L P+ P + + S V S+
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASF 105
Score = 42.5 bits (100), Expect = 8e-05
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 90 SPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
SP A P +LK +V+GD VGKT + + + F + Y TV ++
Sbjct: 2 SPGAGRSSMAHGP--GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-- 57
Query: 150 LSHKKYGGRPY 160
GG+ Y
Sbjct: 58 --SVTVGGKQY 66
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 80.6 bits (199), Expect = 7e-18
Identities = 29/188 (15%), Positives = 72/188 (38%), Gaps = 18/188 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKN-----------TVGVDFSTKLLSHKKYGGRP 291
I+ G GKT+ ++ ++ +K + K T+ DF L + G
Sbjct: 17 IVYYGPGLSGKTTNLK-WIYSKVPEGRKGEMVSLATEDERTLFFDFLP--LDIGEVKGFK 73
Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDS-KCILDNG 350
+ ++ + GQ Y ++ + DG + + D + + ++ ++
Sbjct: 74 TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTL 133
Query: 351 AMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
+P ++ +K DLPD + + + AV +E + E + +++ + ++
Sbjct: 134 DDVPIVIQVNKRDLPDA-LPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVL- 191
Query: 411 SKRMEEEA 418
R+ +
Sbjct: 192 -ARVAGGS 198
Score = 28.6 bits (64), Expect = 3.6
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 16/73 (21%)
Query: 94 SVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKN-----------TVG 142
S I F R E KI+ G GKT+ ++ ++ +K + K T+
Sbjct: 4 STINFANR----EINFKIVYYGPGLSGKTTNLK-WIYSKVPEGRKGEMVSLATEDERTLF 58
Query: 143 VDFSTKLLSHKKY 155
DF + K
Sbjct: 59 FDFLPLDIGEVKG 71
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 73.5 bits (180), Expect = 6e-15
Identities = 36/236 (15%), Positives = 88/236 (37%), Gaps = 21/236 (8%)
Query: 177 GDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCTLSPI 236
G +GK+ FV+ D + T +LS +GGR V + + +S
Sbjct: 35 GQCGIGKSCLCNRFVRPSA-DEF-----HLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRS 88
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
+ V +T F+ ++ +++T + + + K +
Sbjct: 89 LEDCVECKM---HIVEQTE----FIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFC 141
Query: 297 WDIAGQDRYI--CMSRVYYQNSDGCIIMFDLTN--RKSFESVVQWKHDLDSKCILDNGAM 352
D G ++ DG ++ D++ ++F+ +++ +L ++
Sbjct: 142 TDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKK-- 199
Query: 353 LPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
P +++ +KCD + I + + +E S++ ++ ++ + + LV I
Sbjct: 200 -PIVVVLTKCDEGVERY-IRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 69.6 bits (170), Expect = 3e-13
Identities = 44/202 (21%), Positives = 72/202 (35%), Gaps = 39/202 (19%)
Query: 213 SHKKYGGRPVKLQIWDIYCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKF------- 265
+ R + I + ++ GD VGKT + + N F
Sbjct: 128 HVRDAAEREGVMLIKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT 187
Query: 266 -LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFD 324
DNY V VD G+PV L +WD AG + Y + + Y +D +I F
Sbjct: 188 VFDNYSANVMVD------------GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFS 235
Query: 325 LTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVE 370
L + SF V W ++ C P +L+ +K DL D +
Sbjct: 236 LVSPASFHHVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPIT 290
Query: 371 INEIEAVCHQYNFMSWIEVSSK 392
+ A+ + + ++E S+
Sbjct: 291 YPQGLAMAKEIGAVKYLECSAL 312
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 65.4 bits (159), Expect = 6e-12
Identities = 35/216 (16%), Positives = 80/216 (37%), Gaps = 22/216 (10%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG--VDFSTKLLSHKKYGGRPVKLQIWDIA 300
+L+ G S GK+S ++ + + + +G +D L + L +WD
Sbjct: 6 LLLMGRSGSGKSS-MRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGN----MTLNLWDCG 60
Query: 301 GQDRY-----ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
GQD + +Q I +FD+ + + + + + L A +
Sbjct: 61 GQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKI-- 118
Query: 356 LLLASKCDL--PDRQVEI-----NEIEAVCHQYNFMSW-IEVSSKEHLMIEDSMNFLVDR 407
+L K DL D++ E+ + ++ F + +S + + + +V
Sbjct: 119 FVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCS 178
Query: 408 IICSKRMEEEAVERKSSIRLSEETLRDDQPKKLVPA 443
+I + + +++ I + E + ++ LV
Sbjct: 179 LIPNMSNHQSNLKKFKEIMNALEIILFERTTFLVIC 214
Score = 30.7 bits (69), Expect = 0.89
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG--VDFSTKLLSHKKY 155
K+L++G S GK+S ++ + + + +G +D L
Sbjct: 5 KLLLMGRSGSGKSS-MRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGN 51
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.8 bits (160), Expect = 2e-11
Identities = 68/392 (17%), Positives = 121/392 (30%), Gaps = 124/392 (31%)
Query: 74 HINALPARELCKSNSPSPRASVIGFEPRPSDAETVLKIL-----VIGDSTVGKTSYVQGF 128
A +E P P + + AE V K L ++ S VG+ V
Sbjct: 27 FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNL 86
Query: 129 VQNKFLDNY---KN------TVGVDFSTKLLSHKK----Y------GGRPYGTFSPIQTP 169
+F + Y + + + T L+ K+ Y RP+ ++
Sbjct: 87 CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF----DKKSN 142
Query: 170 SYLI--LITGDSTVGKTSYV----QGFVQNKF--L----DNYKNTVG--VDFSTKLLSH- 214
S L + G++ + QG + F L Y VG + FS + LS
Sbjct: 143 SALFRAVGEGNAQL----VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 215 -------KKYGGRPVKLQIW---------DIYCTLSPIQIPTYPILITGDSTVGKTSYVQ 258
+K + + + W Y PI P LI
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP----LI------------- 241
Query: 259 GFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL--QIWDIAGQDRYICMSRV----- 311
G +Q L +Y T K G P +L + G + + +
Sbjct: 242 GVIQ---LAHYVVT-----------AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 312 ----YYQNSDGCI-IMF-------DLTNRKSFE-SVVQWKHDLDSKCILDNGAMLPCLLL 358
++ + I ++F + S S+++ DS L+N +P +L
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE-----DS---LENNEGVPSPML 339
Query: 359 ASKCDLPDRQVEINEIEAVCHQYNFMSWIEVS 390
+ +L QV+ + + +E+S
Sbjct: 340 SIS-NLTQEQVQ-DYVNKTNSHLPAGKQVEIS 369
Score = 48.9 bits (116), Expect = 3e-06
Identities = 79/475 (16%), Positives = 129/475 (27%), Gaps = 166/475 (34%)
Query: 16 LLSPAESESTRSKKLLEPLNTQAVDLAEDAGDGSKSNSPSPARARRSRKNCAETYAHKHI 75
LL ++ ++K+L+ + A + A R + A+ A I
Sbjct: 108 LLQENDTTLVKTKELI-----KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA---I 159
Query: 76 -----NA------LPARELCKSNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSY 124
N L R+L ++ +I + L L+ K +
Sbjct: 160 FGGQGNTDDYFEEL--RDLYQT-YHVLVGDLI------KFSAETLSELIRTTLDAEK-VF 209
Query: 125 VQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFS-PI----QTPSYLIL--ITG 177
QG ++L+N NT D+ LLS S P+ Q Y++ + G
Sbjct: 210 TQGLNILEWLENPSNTPDKDY---LLS---------IPISCPLIGVIQLAHYVVTAKLLG 257
Query: 178 -------DSTVGKTSYVQGFVQ----------NKFLDNYKNTVGVDFSTKLLSHKKYGGR 220
G T + QG V F + + + V F + ++ Y
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY--- 314
Query: 221 PVKLQIWDIYCTLSPIQI----------PTYPIL-ITG-------------------DST 250
P +L P + P+ P+L I+
Sbjct: 315 PN--------TSLPPSILEDSLENNEGVPS-PMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 251 V------GKTSYV--------QGFVQNKFLDNYKNTVGVD------------FSTKLLS- 283
V G + V G L K G+D FS + L
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLNLT--LRKAKAPSGLDQSRIPFSERKLKFSNRFLPV 423
Query: 284 ----HKKYGGRPVKLQIWDIAGQDRYICMSR----VY-------YQNSDGCII--MFDLT 326
H L D+ + VY + G I + D
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 327 NRKSFESVVQWK--HDLDSKCILDNGAMLPCLLLASKCDLPDRQVE---INEIEA 376
V+W+ + ILD G P + L R + + I A
Sbjct: 484 ----IRLPVKWETTTQFKATHILDFG---P-GGASGLGVLTHRNKDGTGVRVIVA 530
Score = 30.8 bits (69), Expect = 1.2
Identities = 32/209 (15%), Positives = 54/209 (25%), Gaps = 95/209 (45%)
Query: 283 SHKK------YGGRPVKLQIWDIA-------------------------------GQ--- 302
S ++ Y +W+ A G+
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 303 DRYICMSRVYYQNSDGCII---MFDLTNRKSFESVVQWKHDLDSKCILDNGAML------ 353
+ Y M ++ DG + +F N S + ++ + G +
Sbjct: 1686 ENYSAM--IFETIVDGKLKTEKIFKEINEHS--TSYTFRS--------EKGLLSATQFTQ 1733
Query: 354 PCLLLASKC---DLPDRQVEINEIEAVC-H---QY-------NFMSWIEVSSKEHLMIED 399
P L L K DL + + I H +Y + MS IE
Sbjct: 1734 PALTLMEKAAFEDLKSKGL-IPADATFAGHSLGEYAALASLADVMS-----------IES 1781
Query: 400 SMNFLVDRIICSKR--MEEEAVERKSSIR 426
+ +V R + AV R R
Sbjct: 1782 LVE-VV-----FYRGMTMQVAVPRDELGR 1804
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 59.9 bits (146), Expect = 8e-11
Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 16/127 (12%)
Query: 243 ILITG-DSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
+ + G + GKT++V +F ++ TVG F+ + ++ V +++WDI G
Sbjct: 25 LTLVGLQYS-GKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN-----VTIKLWDIGG 76
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM--LPCLLLA 359
Q R+ M Y + + M D +++ E+ K++L + +LD + +P L+L
Sbjct: 77 QPRFRSMWERYCRGVSAIVYMVDAADQEKIEAS---KNELHN--LLDKPQLQGIPVLVLG 131
Query: 360 SKCDLPD 366
+K DLP
Sbjct: 132 NKRDLPG 138
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 59.2 bits (144), Expect = 1e-10
Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 15/126 (11%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTV--GVDFSTKLLSHKKYGGRPVKLQIWDIA 300
IL+ G GKT+ + K T + F+ + + +K + +WD+
Sbjct: 32 ILMVGLDAAGKTTIL-----YKLKLGEIVTTIPTIGFNVETVEYKN-----ICFTVWDVG 81
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQD+ + R Y+QN+ G I + D +R+ + + + L + L+ A+
Sbjct: 82 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRD---AVLLVFAN 138
Query: 361 KCDLPD 366
K D+P+
Sbjct: 139 KQDMPN 144
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 59.2 bits (144), Expect = 1e-10
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 23/132 (17%)
Query: 243 ILITG-DSTVGKTSYVQGFVQNKFLDNYKN------TVGVDFSTKLLSHKKYGGRPVKLQ 295
+L G D++ GKT+ + NK + T+G FS + +
Sbjct: 24 VLCLGLDNS-GKTTII-----NKLKPSNAQSQNILPTIG--FSIEKFKSSS-----LSFT 70
Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHD-LDSKCILDNGAMLP 354
++D++GQ RY + YY+ I + D ++R + L+ I P
Sbjct: 71 VFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRI--P 128
Query: 355 CLLLASKCDLPD 366
L A+K DL D
Sbjct: 129 ILFFANKMDLRD 140
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 58.0 bits (141), Expect = 4e-10
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 19/128 (14%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG--VDFSTKLLSHKKYGGRPVKLQIWDIA 300
ILI G GKT+ + + T + F+ + LS+K +KL +WD+
Sbjct: 21 ILILGLDGAGKTTIL-----YRLQIGEVVTTKPTIGFNVETLSYKN-----LKLNVWDLG 70
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM--LPCLLL 358
GQ R YY ++ I + D T++ + +L +L + L+
Sbjct: 71 GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTA---SKELHL--MLQEEELQDAALLVF 125
Query: 359 ASKCDLPD 366
A+K D P
Sbjct: 126 ANKQDQPG 133
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 56.4 bits (137), Expect = 1e-09
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 23/130 (17%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKN----TVGVDFSTKLLSHKKYGGRPVKLQIWD 298
IL+ G GKT+ + K T+G F+ + + +K + +WD
Sbjct: 3 ILMVGLDAAGKTTIL-----YKLKLGEIVTTIPTIG--FNVETVEYKN-----ISFTVWD 50
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM--LPCL 356
+ GQD+ + R Y+QN+ G I + D +R+ + +L +L + L
Sbjct: 51 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA---REELMR--MLAEDELRDAVLL 105
Query: 357 LLASKCDLPD 366
+ A+K DLP+
Sbjct: 106 VFANKQDLPN 115
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 56.4 bits (137), Expect = 1e-09
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 19/128 (14%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKN----TVGVDFSTKLLSHKKYGGRPVKLQIWD 298
ILI G GKT+ + + T+G F+ + +++K +K Q+WD
Sbjct: 10 ILILGLDGAGKTTIL-----YRLQVGEVVTTIPTIG--FNVETVTYKN-----LKFQVWD 57
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
+ G R YY N+D I + D +R K +L + + ++
Sbjct: 58 LGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGIS---KSELVAMLEEEELRKAILVVF 114
Query: 359 ASKCDLPD 366
A+K D+
Sbjct: 115 ANKQDMEQ 122
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 56.5 bits (137), Expect = 1e-09
Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 30/182 (16%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKN----TVGVDFSTKLLSHKKYGGRPVKLQIWD 298
+L+ G GKT+ + KF + T+G F+ K L H+ KL IWD
Sbjct: 21 LLMLGLDNAGKTTIL-----KKFNGEDVDTISPTLG--FNIKTLEHRG-----FKLNIWD 68
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
+ GQ R Y++++DG I + D +R+ + + +L S + + A L+
Sbjct: 69 VGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDC---QRELQSLLVEERLAGATLLIF 125
Query: 359 ASKCDLPD--RQVEINEI----EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
A+K DLP I E H + S+ + +++L+D I S
Sbjct: 126 ANKQDLPGALSCNAIQEALELDSIRSHHWRIQG---CSAVTGEDLLPGIDWLLDDI--SS 180
Query: 413 RM 414
R+
Sbjct: 181 RV 182
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 56.5 bits (137), Expect = 1e-09
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 23/130 (17%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKN----TVGVDFSTKLLSHKKYGGRPVKLQIWD 298
++I G GKT+ + +F N T+G + + + + +WD
Sbjct: 19 VIIVGLDNAGKTTIL-----YQFSMNEVVHTSPTIG--SNVEEIVINN-----TRFLMWD 66
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM--LPCL 356
I GQ+ YY N++ I++ D T+R+ + +L +L + + L
Sbjct: 67 IGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVT---REELYK--MLAHEDLRKAGLL 121
Query: 357 LLASKCDLPD 366
+ A+K D+ +
Sbjct: 122 IFANKQDVKE 131
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 55.7 bits (135), Expect = 2e-09
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 23/130 (17%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKN----TVGVDFSTKLLSHKKYGGRPVKLQIWD 298
++I G GKT+ + +F N T+G + + + + +WD
Sbjct: 24 VIIVGLDNAGKTTIL-----YQFSMNEVVHTSPTIG--SNVEEIVINN-----TRFLMWD 71
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM--LPCL 356
I GQ+ YY N++ I++ D T+R+ + +L +L + + L
Sbjct: 72 IGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVT---REELYK--MLAHEDLRKAGLL 126
Query: 357 LLASKCDLPD 366
+ A+K D+ +
Sbjct: 127 IFANKQDVKE 136
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 55.3 bits (134), Expect = 3e-09
Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 34/184 (18%)
Query: 243 ILITG-DSTVGKTSYVQGFVQNKFLDNYKN----TVGVDFSTKLLSHKKYGGRPVKLQIW 297
IL+ G D+ GKT+ + + + T G F+ K + + KL +W
Sbjct: 19 ILLLGLDN-AGKTTLL-----KQLASEDISHITPTQG--FNIKSVQSQG-----FKLNVW 65
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM--LPC 355
DI GQ + R Y++N+D I + D +RK FE +L +L+ + +P
Sbjct: 66 DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEET---GQELTE--LLEEEKLSCVPV 120
Query: 356 LLLASKCDLPD--RQVEINEI----EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
L+ A+K DL EI E + S S+ ++D MN++ +
Sbjct: 121 LIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQS---CSALTGEGVQDGMNWVCKNVN 177
Query: 410 CSKR 413
K+
Sbjct: 178 AKKK 181
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 54.9 bits (133), Expect = 5e-09
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 21/129 (16%)
Query: 243 ILITG-DSTVGKTSYVQGFVQNKFLDNYKN----TVGVDFSTKLLSHKKYGGRPVKLQIW 297
+L+ G D+ GKTS + + TVG + + L +K + ++W
Sbjct: 25 VLMLGLDN-AGKTSIL-----YRLHLGDVVTTVPTVG--VNLETLQYKN-----ISFEVW 71
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D+ GQ R Y+ ++D I + D T+R KH+L + D L+
Sbjct: 72 DLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVA---KHELYALLDEDELRKSLLLI 128
Query: 358 LASKCDLPD 366
A+K DLPD
Sbjct: 129 FANKQDLPD 137
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 53.8 bits (130), Expect = 1e-08
Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 25/131 (19%)
Query: 243 ILITG-DSTVGKTSYVQGFVQNKFLDNYKN----TVGVDFSTKLLSHKKYGGRPVKLQIW 297
++ G D+ GKT+ + + D+ T+ +++ L+ + +
Sbjct: 28 LVFLGLDNA-GKTTLL-----HMLKDDRLGQHVPTLH--PTSEELTIAG-----MTFTTF 74
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML--PC 355
D+ G + + + Y +G + + D + + K +LDS ++ + + P
Sbjct: 75 DLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLES---KEELDS--LMTDETIANVPI 129
Query: 356 LLLASKCDLPD 366
L+L +K D P+
Sbjct: 130 LILGNKIDRPE 140
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 52.6 bits (127), Expect = 3e-08
Identities = 22/131 (16%), Positives = 57/131 (43%), Gaps = 25/131 (19%)
Query: 243 ILITG-DSTVGKTSYVQGFVQNKFLDNYKN----TVGVDFSTKLLSHKKYGGRPVKLQIW 297
+L G D+ GKT+ + + ++ T +++ L+ +K +
Sbjct: 26 LLFLGLDNA-GKTTLL-----HMLKNDRLATLQPTWH--PTSEELAIGN-----IKFTTF 72
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM--LPC 355
D+ G + + + Y+ +G + + D + + F+ + +LD+ + + + +P
Sbjct: 73 DLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEA---RVELDA--LFNIAELKDVPF 127
Query: 356 LLLASKCDLPD 366
++L +K D P+
Sbjct: 128 VILGNKIDAPN 138
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 51.1 bits (122), Expect = 1e-07
Identities = 31/183 (16%), Positives = 68/183 (37%), Gaps = 25/183 (13%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG--VDFSTKLLSHKKYGGRPVKLQIWDIA 300
IL+ G GK+S +Q V +K N + +S+ + V QIWD
Sbjct: 23 ILLMGLRRSGKSS-IQKVVFHKMSPNETLFLESTNKIYKDDISNSSF----VNFQIWDFP 77
Query: 301 GQDRYIC---MSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
GQ + + ++ + I + D + E++ + + ++ +
Sbjct: 78 GQMDFFDPTFDYEMIFRGTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNF--EV 134
Query: 358 LASKCDL--PDRQVEI---------NEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVD 406
K D D ++E +++ + +S+ S +H I ++ + +V
Sbjct: 135 FIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDH-SIFEAFSKVVQ 193
Query: 407 RII 409
++I
Sbjct: 194 KLI 196
Score = 31.9 bits (72), Expect = 0.25
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG--VDFSTKLLSHKKYGGRPVKLQIWDIY 230
IL+ G GK+S +Q V +K N + +S+ + V QIWD
Sbjct: 23 ILLMGLRRSGKSS-IQKVVFHKMSPNETLFLESTNKIYKDDISNSSF----VNFQIWDFP 77
Score = 29.2 bits (65), Expect = 2.0
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG--VDFSTKLLSHKKY 155
+ +IL++G GK+S +Q V +K N + +S+ +
Sbjct: 11 RENLYFQGSKPRILLMGLRRSGKSS-IQKVVFHKMSPNETLFLESTNKIYKDDISNSSF 68
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 51.4 bits (123), Expect = 4e-07
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 272 TVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSF 331
TVG F+ + +++K VK +WD+ GQD+ + R YY + G I + D +R
Sbjct: 353 TVG--FNVETVTYKN-----VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRI 405
Query: 332 ESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366
+ + +L L+ A+K DLPD
Sbjct: 406 DEA---RQELHRIINDREMRDAIILIFANKQDLPD 437
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 50.7 bits (121), Expect = 4e-07
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 272 TVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSF 331
T+G F+ + + +K + +WD+ GQD+ + R Y+QN+ G I + D +R+
Sbjct: 196 TIG--FNVETVEYKN-----ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV 248
Query: 332 ESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366
+ +L D L+ A+K DLP+
Sbjct: 249 NEA---REELMRMLAEDELRDAVLLVFANKQDLPN 280
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 49.3 bits (118), Expect = 4e-07
Identities = 22/129 (17%), Positives = 39/129 (30%), Gaps = 14/129 (10%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I+I G GKTS + + + TV + + D G
Sbjct: 51 IIIAGPQNSGKTSLLTLLTTDSV----RPTV-----VSQEPLSAADYDGSGVTLVDFPGH 101
Query: 303 DRYICMSRVYYQNS----DGCIIMFD-LTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
+ Y + G I M D + K + ++ D+ S + L+
Sbjct: 102 VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 161
Query: 358 LASKCDLPD 366
+K +L
Sbjct: 162 ACNKSELFT 170
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 49.4 bits (118), Expect = 5e-07
Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 10/127 (7%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L G GKT + ++ D ++ S+ + G L + D+ G
Sbjct: 10 VLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSIT--DSSAIYKVNNNRG--NSLTLIDLPGH 64
Query: 303 DRY-ICMSRVYYQNSDGCIIMFDLTNR-KSFESVVQWKHD-LDSKCILDNGAMLPCLLLA 359
+ + + ++ + + D + + V ++ + L L N L L+
Sbjct: 65 ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSL--LIAC 122
Query: 360 SKCDLPD 366
+K D+
Sbjct: 123 NKQDIAM 129
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 49.0 bits (117), Expect = 7e-07
Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 14/129 (10%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I+I G GKTS + + + TV + + + D G
Sbjct: 15 IIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDG-----SGVTLVDFPGH 65
Query: 303 DRYICMSRVYYQNS----DGCIIMFD-LTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
+ Y + G I M D + K + ++ D+ S + L+
Sbjct: 66 VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 125
Query: 358 LASKCDLPD 366
+K +L
Sbjct: 126 ACNKSELFT 134
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 2e-04
Identities = 73/477 (15%), Positives = 133/477 (27%), Gaps = 159/477 (33%)
Query: 84 CKSNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVG-----------KTSYVQGFVQNK 132
CK P+ S++ S E + I++ D+ G + VQ FV+
Sbjct: 35 CKDVQDMPK-SIL------SKEE-IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86
Query: 133 FLDNYK------NTVGVDFSTKLLSHKKYGGRPYGT---FSP-----------IQT---- 168
NYK T S + + R Y F+ ++
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 169 --PSYLILITGDSTVGKTSYVQGFVQN-KFLDNYKN-----TVGVDFSTKL-------LS 213
P+ +LI G GKT + K + S + L
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 214 H---KKYGGRP-----VKLQIWDIYCTLSP-IQIPTYP---------------------- 242
+ + R +KL+I I L ++ Y
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 243 -ILI-TGDSTV------GKTSYV------QGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG 288
IL+ T V T+++ ++ + L +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD--LPREVLT 324
Query: 289 GRPVKLQIWDIAGQDR-YICMSRVY-YQNSD--GCIIMFDLTN------RKSFESVVQWK 338
P +L I IA R + + + N D II L RK F+ +
Sbjct: 325 TNPRRLSI--IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--- 379
Query: 339 HDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398
+ A +P +LL+ + W +V + +
Sbjct: 380 -------VFPPSAHIPTILLS------------------------LIWFDVIKSD---VM 405
Query: 399 DSMNFLVDRIICSKRMEEEAVERKSSIRLSEETLRDDQP---KKLVPADKV-STYCW 451
+N L + K+ +E + SI L + +++ + +V + T+
Sbjct: 406 VVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Score = 39.1 bits (90), Expect = 0.003
Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 31/144 (21%)
Query: 308 MSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDR 367
YQ D I+ +F + D K + D M +L + D
Sbjct: 11 TGEHQYQYKD---ILSV--FEDAF------VDNFDCKDVQD---MPKSILSKEEID---- 52
Query: 368 QVEINEIEAVCHQYNFMSWIEVSSKEHLM---IEDSM----NFLVDRIICSKRMEEEAVE 420
I + + W +S +E ++ +E+ + FL+ I + ++
Sbjct: 53 --HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI--KTEQRQPSMM 108
Query: 421 RKSSIRLSEETLRDDQ--PKKLVP 442
+ I + D+Q K V
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVS 132
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 39.7 bits (92), Expect = 0.001
Identities = 18/125 (14%), Positives = 42/125 (33%), Gaps = 11/125 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ G GK+S + V + + ST S + + + L + ++ GQ
Sbjct: 2 VLLMGVRRCGKSS-ICKVVFHNMQPLDTLYLE---STSNPSLEHFST-LIDLAVMELPGQ 56
Query: 303 DRYICM---SRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
Y S +++ + + D + ++ + + + +L
Sbjct: 57 LNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMII--EYAYKVNPSINIEVLI 113
Query: 360 SKCDL 364
K D
Sbjct: 114 HKVDG 118
Score = 29.3 bits (65), Expect = 2.6
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 172 LILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIY 230
++L+ G GK+S + V + + ST S + + + L + ++
Sbjct: 1 MVLLMGVRRCGKSS-ICKVVFHNMQPLDTLYLE---STSNPSLEHFST-LIDLAVMELP 54
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 35.0 bits (80), Expect = 0.029
Identities = 10/82 (12%), Positives = 18/82 (21%), Gaps = 7/82 (8%)
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFE---SVVQWKHDLDSKCILDNGAML 353
+ I + + DG I + + K E D +L
Sbjct: 107 DQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL 166
Query: 354 PCLLLASKCDLPDR--QVEINE 373
+L R +
Sbjct: 167 --VLSCISQGDVKRMPCFYLAH 186
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.4 bits (73), Expect = 0.16
Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 43/107 (40%)
Query: 332 ESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSS 391
ES+ +W+ + R E++ V Q W E +
Sbjct: 85 ESIRKWREEQR-----------------------KRLQELDAASKVMEQ----EWREKAK 117
Query: 392 KEHLMIEDSMNFLVDRIICSKRMEEEAVERKSSIRLSEETL---RDD 435
K+ +E+ + +R E+ + K + R++++ D
Sbjct: 118 KD---LEE---WN-------QRQSEQVEKNKINNRIADKAFYQQPDA 151
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 33.1 bits (75), Expect = 0.20
Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 21/160 (13%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG- 301
+ +TG++ GK+S++ + GV T K+ P + WD+ G
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIP-NVVFWDLPGI 130
Query: 302 ------QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
D Y + ++ + D II+ +K+ + + +
Sbjct: 131 GSTNFPPDTY--LEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMK----------KEF 178
Query: 356 LLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHL 395
+ +K D D E + + + I ++
Sbjct: 179 YFVRTKVDS-DITNEADGEPQTFDKEKVLQDIRLNCVNTF 217
Score = 27.7 bits (61), Expect = 8.2
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSP 165
+VL + V G++ GK+S++ + GV T K+ P F
Sbjct: 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVF-- 124
Query: 166 IQTPSY 171
P
Sbjct: 125 WDLPGI 130
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 31.0 bits (70), Expect = 1.1
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 284
P+++ G GKT + ++ ++ V ++FS+
Sbjct: 1305 RPLILCGPPGSGKTMTLTSTLRA--FPDF-EVVSLNFSSATTPE 1345
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET:
DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11
PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Length = 296
Score = 29.5 bits (67), Expect = 1.9
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 208
+I++T S +GK+++V+ VG+
Sbjct: 34 GGEVIMVTSGSGMGKSTFVRQQALQWGT-AMGKKVGL-AM 71
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 29.4 bits (67), Expect = 2.2
Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 6/95 (6%)
Query: 354 PCLLLASKCDLPDRQVEINEIEAVCHQYNFMSW--IEVSSKEHLMIEDSMNFLVDRIICS 411
P L+ +K DL + + ++A+ + VS+ + L + +
Sbjct: 271 PSLVALNKVDLLEEE----AVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRST 326
Query: 412 KRMEEEAVERKSSIRLSEETLRDDQPKKLVPADKV 446
E + ++ E + + V A +V
Sbjct: 327 PPPEMPKPVPRKEVQAGVEVVPVAEGVYEVRAPEV 361
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 29.5 bits (67), Expect = 2.4
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 353 LPCLLLASKCDLPDRQVEINEIEAVCHQYNFM--SWIEVSSKEHLMIEDSMNFLVDRI 408
+ ++ +K DL + Q + I+A Y + SSK+ + D + D+
Sbjct: 118 IQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKT 175
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 29.0 bits (66), Expect = 3.2
Identities = 15/75 (20%), Positives = 20/75 (26%), Gaps = 19/75 (25%)
Query: 256 YVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY----GGRPVKLQIWDIAGQDRYICMSRV 311
++G F ++ S K + GG P I G I
Sbjct: 125 IIRGHA--AFTS--DPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASLGI----- 175
Query: 312 YYQNSDGCIIMFDLT 326
SDG F L
Sbjct: 176 ---TSDG---FFQLE 184
>3sy9_A Histidine porin OPDC; beta-barrel, channel, bacterial outer
membrane, membrane Pro; HET: C8E BOG; 2.80A {Pseudomonas
aeruginosa}
Length = 430
Score = 29.1 bits (64), Expect = 3.7
Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 1/130 (0%)
Query: 189 GFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCTLSPIQIPTYPILITGD 248
G L + S K GG +K++ +D L Q + P++ G+
Sbjct: 75 GTGGTSILPITSPSKEGYESGKAPDEFSSGGAALKIRAFDTELKLG-DQFLSNPVVAGGE 133
Query: 249 STVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICM 308
S + ++ + N ++ T G TK + + ++
Sbjct: 134 SRMLPQTFRGVSLTNNSFEDLTLTAGQVSFTKYYNQSGHRRLGSYYGELPGDRDSHHLSW 193
Query: 309 SRVYYQNSDG 318
+ +G
Sbjct: 194 LGGTWGGIEG 203
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold,
structural genomics, joint center for structur genomics,
JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Length = 202
Score = 27.8 bits (61), Expect = 5.9
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMF-DLTNRKSFESVVQW 337
+ G+ R C + + ++F D + R+ V ++
Sbjct: 128 VDGRFRVGCALATAFSITRPVTLLFDDYSQRRWQHQVEEF 167
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 28.3 bits (63), Expect = 6.2
Identities = 13/70 (18%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 354 PCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII-CSK 412
P L++ +K D+ D + I +E + + I++S+ + I+ ++ + ++
Sbjct: 282 PFLVVINKIDVADEE-NIKRLEKFVKEKGL-NPIKISALKGTGIDLVKEEIIKTLRPLAE 339
Query: 413 RMEEEAVERK 422
++ E +ER+
Sbjct: 340 KVAREKIERE 349
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 27.7 bits (61), Expect = 7.5
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 168 TPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD 206
S +++ G + GKT+ F + +L++ V+
Sbjct: 12 MASMIVVFVGTAGSGKTTLTGEFGR--YLEDNYKVAYVN 48
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 27.9 bits (62), Expect = 8.3
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 278
I++ G GKT + ++N Y + VG++FS
Sbjct: 1268 RGIILCGPPGSGKTMIMNNALRN--SSLY-DVVGINFS 1302
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA
complex, DNA-binding protein- complex; HET: DNA 3DR;
5.93A {Mus musculus}
Length = 117
Score = 26.4 bits (57), Expect = 9.1
Identities = 11/57 (19%), Positives = 18/57 (31%)
Query: 291 PVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCIL 347
V L WDI + IC + + + T+ + + H CI
Sbjct: 38 AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS 94
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.399
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,627,513
Number of extensions: 383728
Number of successful extensions: 1457
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1175
Number of HSP's successfully gapped: 310
Length of query: 452
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 355
Effective length of database: 3,993,456
Effective search space: 1417676880
Effective search space used: 1417676880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)