RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14768
(452 letters)
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 121 bits (303), Expect = 4e-33
Identities = 49/176 (27%), Positives = 96/176 (54%), Gaps = 9/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ GDS VGKT + F ++ F + +T+G+DF + + + G+ +KLQIWD A
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI---ELDGKRIKLQIWDTA 63
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ + G ++++D+TN KSF+++ W +++ D + +L
Sbjct: 64 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD---VEKMILGNK 120
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
RQV E + Y + ++E S+K ++ +E++ L I +M++
Sbjct: 121 CDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIK--AKMDK 173
Score = 60.2 bits (145), Expect = 2e-11
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+L+ GDS VGKT + F ++ F + +T+G+DF + + + G+ +KLQIWD
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI---ELDGKRIKLQIWDT 62
Score = 52.8 bits (126), Expect = 6e-09
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+ K+L+IGDS VGKT + F ++ F + +T+G+DF + + + G+
Sbjct: 6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI---ELDGKRI 55
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 119 bits (300), Expect = 1e-32
Identities = 52/166 (31%), Positives = 93/166 (56%), Gaps = 8/166 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ GDS VGK+ + FV++KF ++ T+G+DF K + G+ VKLQIWD AGQ
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTV---DINGKKVKLQIWDTAGQ 61
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ ++ YY+ + G I+++D+T+ ++F ++ QW ++ + LL+ +K
Sbjct: 62 ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEA----QLLLVGNKS 117
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
D+ R V ++ EA+ + + +IE S+K + + L I
Sbjct: 118 DMETRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLI 162
Score = 59.8 bits (144), Expect = 2e-11
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
IL+ GDS VGK+ + FV++KF ++ T+G+DF K + G+ VKLQIWD
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTV---DINGKKVKLQIWDT 58
Score = 56.3 bits (135), Expect = 4e-10
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+++KIL+IGDS VGK+ + FV++KF ++ T+G+DF K
Sbjct: 1 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIK 42
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 113 bits (282), Expect = 6e-30
Identities = 58/192 (30%), Positives = 106/192 (55%), Gaps = 12/192 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +L+ G+S VGK+ + F + + ++Y +T+GVDF K + + G+ VKLQIWD A
Sbjct: 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTV---ELDGKTVKLQIWDTA 63
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++ YY+ S G II++D+T+++SF V W ++D + + LL+ +
Sbjct: 64 GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVLKLLVGN 119
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE---- 416
KCDL D++V ++ N M ++E S+ + +ED+ + +I S +
Sbjct: 120 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 179
Query: 417 -EAVERKSSIRL 427
+ E K ++ L
Sbjct: 180 TQKKEDKGNVNL 191
Score = 55.6 bits (133), Expect = 1e-09
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+L+ G+S VGK+ + F + + ++Y +T+GVDF K + + G+ VKLQIWD
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTV---ELDGKTVKLQIWDT 62
Score = 53.3 bits (127), Expect = 6e-09
Identities = 17/46 (36%), Positives = 31/46 (67%)
Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
S+ + + K+L+IG+S VGK+ + F + + ++Y +T+GVDF K
Sbjct: 1 SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIK 46
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 111 bits (277), Expect = 2e-29
Identities = 51/173 (29%), Positives = 91/173 (52%), Gaps = 7/173 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ G++ VGKT V+ F Q F T+GVDF K + + G VKLQIWD A
Sbjct: 6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTV---EINGEKVKLQIWDTA 62
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ +++ YY++++ I+ +D+T +SF + +W +++ + +L+ +
Sbjct: 63 GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS----NKVITVLVGN 118
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
K DL +R+ + + M ++E S+KE +E L R+I R
Sbjct: 119 KIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 171
Score = 59.1 bits (142), Expect = 5e-11
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
I++ G++ VGKT V+ F Q F T+GVDF K + + G VKLQIWD
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTV---EINGEKVKLQIWDT 61
Score = 52.1 bits (124), Expect = 1e-08
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
D + + KI++IG++ VGKT V+ F Q F T+GVDF K
Sbjct: 1 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIK 45
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 109 bits (273), Expect = 7e-29
Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 7/179 (3%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ T ILI G+S VGK+S + F + F T+GVDF K G KL IW
Sbjct: 5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVK---TISVDGNKAKLAIW 61
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+R+ ++ YY+ + G I+++D+T R +F + + L+ + +L
Sbjct: 62 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFV---KLDNWLNELETYCTRNDIVNML 118
Query: 358 LASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
+ +K D +R+V+ NE +++ M +IE S+K ++ + LV++II + + E
Sbjct: 119 VGNKIDKENREVDRNEGLKFARKHS-MLFIEASAKTCDGVQCAFEELVEKIIQTPGLWE 176
Score = 50.6 bits (120), Expect = 4e-08
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
D T LKIL+IG+S VGK+S + F + F T+GVDF K
Sbjct: 3 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVK 47
Score = 47.5 bits (112), Expect = 5e-07
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ILI G+S VGK+S + F + F T+GVDF K G KL IWD
Sbjct: 6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVK---TISVDGNKAKLAIWD 62
Query: 229 I 229
Sbjct: 63 T 63
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 106 bits (265), Expect = 9e-28
Identities = 49/169 (28%), Positives = 89/169 (52%), Gaps = 3/169 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD VGK+S + +V NKF +T+GV+F K + G V +QIWD A
Sbjct: 7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNK---DLEVDGHFVTMQIWDTA 63
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ + +Y+ SD C++ F + + +SF+++ WK + + P ++L +
Sbjct: 64 GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 123
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
K D+ +RQV E +A C + E S+K+ + + V R++
Sbjct: 124 KIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 172
Score = 48.4 bits (114), Expect = 2e-07
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
++ K++++GD VGK+S + +V NKF +T+GV+F
Sbjct: 4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEF 43
Score = 43.8 bits (102), Expect = 8e-06
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
++ + +++ GD VGK+S + +V NKF +T+GV+F K + G V +QI
Sbjct: 3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNK---DLEVDGHFVTMQI 59
Query: 227 WDI 229
WD
Sbjct: 60 WDT 62
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 104 bits (259), Expect = 6e-27
Identities = 55/169 (32%), Positives = 92/169 (54%), Gaps = 7/169 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ILI G+S+VGKTS++ + + F + +TVG+DF K + +KLQIWD A
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK---TIYRNDKRIKLQIWDTA 62
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G I+M+D+TN +SF +V W + LL+ +
Sbjct: 63 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQ----IKTYSWDNAQVLLVGN 118
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
KCD+ D +V +E + + E S+K+++ ++ + LVD I
Sbjct: 119 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVIC 167
Score = 50.6 bits (120), Expect = 3e-08
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
ILI G+S+VGKTS++ + + F + +TVG+DF K + +KLQIWD
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK---TIYRNDKRIKLQIWDT 61
Score = 47.6 bits (112), Expect = 5e-07
Identities = 18/45 (40%), Positives = 31/45 (68%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
+ + + KIL+IG+S+VGKTS++ + + F + +TVG+DF K
Sbjct: 1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK 45
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 103 bits (256), Expect = 2e-26
Identities = 52/181 (28%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL-------SHKKYGGRPVKLQ 295
+L GDS VGKT+++ + NKF + TVG+DF K + + V LQ
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQ 67
Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
+WD AGQ+R+ ++ +++++ G ++MFDLT+++SF +V W L + +N +
Sbjct: 68 LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI--V 125
Query: 356 LLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
L+ R+V + + +Y + + E S+ +E ++ L+D I+ KRME
Sbjct: 126 LIGNKADLPDQREVNERQARELADKYG-IPYFETSAATGQNVEKAVETLLDLIM--KRME 182
Query: 416 E 416
+
Sbjct: 183 Q 183
Score = 50.7 bits (120), Expect = 5e-08
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
D + ++K+L +GDS VGKT+++ + NKF + TVG+DF K
Sbjct: 1 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREK 45
Score = 46.8 bits (110), Expect = 9e-07
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL-------SHKKYGGRPVKLQ 225
+L GDS VGKT+++ + NKF + TVG+DF K + + V LQ
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQ 67
Query: 226 IWDI 229
+WD
Sbjct: 68 LWDT 71
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 101 bits (252), Expect = 6e-26
Identities = 45/169 (26%), Positives = 87/169 (51%), Gaps = 8/169 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDN-YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
+ +++ GDS VGKT + F FL + +TVG+DF K G VKLQ+WD
Sbjct: 7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNK---VLDVDGVKVKLQMWDT 63
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+R+ ++ YY+++ ++++D+TN+ SF+++ W ++ + LL
Sbjct: 64 AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA---QHDVALMLLGN 120
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+R V+ + E + +Y + ++E S+K L ++ + + +
Sbjct: 121 KVDSAHERVVKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAKEL 168
Score = 49.1 bits (116), Expect = 1e-07
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDN-YKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
++ +++ GDS VGKT + F FL + +TVG+DF K G VKLQ+WD
Sbjct: 6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNK---VLDVDGVKVKLQMWD 62
Query: 229 I 229
Sbjct: 63 T 63
Score = 41.8 bits (97), Expect = 4e-05
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDN-YKNTVGVDFST 147
K++++GDS VGKT + F FL + +TVG+DF
Sbjct: 6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRN 46
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 98.8 bits (245), Expect = 6e-25
Identities = 45/169 (26%), Positives = 94/169 (55%), Gaps = 7/169 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GDS VGK++ + F +N+F K+T+GV+F+T+ + G+ +K QIWD A
Sbjct: 5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR---SIQVDGKTIKAQIWDTA 61
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+RY ++ YY+ + G ++++D+ ++E+V +W +L + + +L+ +
Sbjct: 62 GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA----DSNIVIMLVGN 117
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
K DL + + + N +S+IE S+ + +E++ ++ I
Sbjct: 118 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY 166
Score = 44.9 bits (105), Expect = 4e-06
Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
+ K+++IGDS VGK++ + F +N+F K+T+GV+F
Sbjct: 4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEF 41
Score = 41.0 bits (95), Expect = 8e-05
Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+++ GDS VGK++ + F +N+F K+T+GV+F+T+ + G+ +K QIWD
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR---SIQVDGKTIKAQIWDT 60
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 96.1 bits (238), Expect = 5e-24
Identities = 46/168 (27%), Positives = 88/168 (52%), Gaps = 7/168 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +I GD VGK+ + F + KF+ + +T+GV+F T+ + G+ +KLQIWD A
Sbjct: 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTR---IIEVSGQKIKLQIWDTA 61
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++R YY+ + G ++++D+T R ++ + W D + +L+ +
Sbjct: 62 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN----PNTVIILIGN 117
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
K DL ++ E + N + ++E S+K +ED+ +I
Sbjct: 118 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165
Score = 44.5 bits (104), Expect = 5e-06
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147
+ K ++IGD VGK+ + F + KF+ + +T+GV+F T
Sbjct: 4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGT 43
Score = 41.8 bits (97), Expect = 4e-05
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +I GD VGK+ + F + KF+ + +T+GV+F T+ + G+ +KLQIWD
Sbjct: 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTR---IIEVSGQKIKLQIWDT 60
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 95.8 bits (237), Expect = 7e-24
Identities = 46/175 (26%), Positives = 94/175 (53%), Gaps = 9/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ L+ G++ GK+ + F++ KF D+ +T+GV+F +K GG+ VKLQIWD A
Sbjct: 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSK---IINVGGKYVKLQIWDTA 62
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ ++R YY+ + G ++++D+T+R+++ ++ W D + + +L +
Sbjct: 63 GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTD----ARMLASQNIVIILCGN 118
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
K DL + + Q N + ++E S+ +E++ +I+ ++E
Sbjct: 119 KKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKIL--NKIE 171
Score = 46.1 bits (108), Expect = 2e-06
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ L+ G++ GK+ + F++ KF D+ +T+GV+F +K GG+ VKLQIWD
Sbjct: 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSK---IINVGGKYVKLQIWDT 61
Score = 45.3 bits (106), Expect = 3e-06
Identities = 16/46 (34%), Positives = 31/46 (67%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 153
+ K LVIG++ GK+ + F++ KF D+ +T+GV+F +K+++
Sbjct: 5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVG 50
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 95.1 bits (235), Expect = 1e-23
Identities = 56/178 (31%), Positives = 96/178 (53%), Gaps = 3/178 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V KF + YK T+G DF TK R V +QIWD AGQ
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK---EVMVDDRLVTMQIWDTAGQ 61
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C+++FD+T +F+++ W+ + + + P ++L +K
Sbjct: 62 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
DL +RQV +A C+ N + + E S+KE + +E + + + + E E
Sbjct: 122 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNE 179
Score = 50.9 bits (120), Expect = 4e-08
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
LK++++GDS VGKTS + +V KF + YK T+G DF
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF 39
Score = 46.2 bits (108), Expect = 2e-06
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
++I GDS VGKTS + +V KF + YK T+G DF TK R V +QIWD
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK---EVMVDDRLVTMQIWDT 58
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 92.3 bits (228), Expect = 1e-22
Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 7/169 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ G+ VGKTS V + +NKF D + T+G F TK GG+ V L IWD A
Sbjct: 4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTK---KLNIGGKRVNLAIWDTA 60
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ + +YY++S+G I+++D+T+ SF+ V W +L + ++ +
Sbjct: 61 GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCIVGN 116
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
K DL + + + S+K++ IE+ L R+I
Sbjct: 117 KIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 165
Score = 43.8 bits (102), Expect = 7e-06
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
K++++G+ VGKTS V + +NKF D + T+G F TK
Sbjct: 4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTK 43
Score = 43.4 bits (101), Expect = 1e-05
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 170 SYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 227
+Y +++ G+ VGKTS V + +NKF D + T+G F TK GG+ V L IW
Sbjct: 1 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTK---KLNIGGKRVNLAIW 57
Query: 228 DIYC 231
D
Sbjct: 58 DTAG 61
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 90.7 bits (224), Expect = 4e-22
Identities = 43/176 (24%), Positives = 89/176 (50%), Gaps = 9/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +I GD+ VGK+ + F +F + T+GV+F + G+ +KLQIWD A
Sbjct: 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR---MVNIDGKQIKLQIWDTA 60
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+ + ++R YY+ + G ++++D+T R++F + W D + + +L+ +
Sbjct: 61 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS----SSNMVIMLIGN 116
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
K DL R+ E + + + ++E S+K +E++ I +++++
Sbjct: 117 KSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY--RKIQQ 170
Score = 45.6 bits (107), Expect = 2e-06
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
+ K ++IGD+ VGK+ + F +F + T+
Sbjct: 3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI 36
Score = 43.3 bits (101), Expect = 1e-05
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 170 SYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 227
SYL +I GD+ VGK+ + F +F + T+GV+F + G+ +KLQIW
Sbjct: 1 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR---MVNIDGKQIKLQIW 57
Query: 228 DI 229
D
Sbjct: 58 DT 59
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 89.0 bits (219), Expect = 2e-21
Identities = 44/169 (26%), Positives = 91/169 (53%), Gaps = 4/169 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GDS VGKTS + +V +K+ YK T+G DF TK ++ G + +Q+WD AGQ
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTV--DGDKVATMQVWDTAGQ 62
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ + +Y+ +D C++++D+TN SFE++ W+ + +++ P ++L +K
Sbjct: 63 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122
Query: 363 DLPDRQVEINE--IEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
D + + ++E + + + S+K + ++ + + +
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 171
Score = 47.8 bits (112), Expect = 4e-07
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142
+LK++++GDS VGKTS + +V +K+ YK T+G
Sbjct: 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIG 36
Score = 40.8 bits (94), Expect = 9e-05
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
++I GDS VGKTS + +V +K+ YK T+G DF TK ++ G + +Q+WD
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTV--DGDKVATMQVWDT 59
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 88.1 bits (217), Expect = 3e-21
Identities = 43/168 (25%), Positives = 89/168 (52%), Gaps = 7/168 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ++ G+ +VGKTS + F+ + F + Y+ T+G+DF +K R ++LQ+WD A
Sbjct: 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSK---TMYLEDRTIRLQLWDTA 57
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+R+ + Y ++S ++++D+TN SF+ +W D+ ++ G+ + +L+ +
Sbjct: 58 GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER----GSDVIIMLVGN 113
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
K DL D++ E + + +IE S+K ++ + +
Sbjct: 114 KTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161
Score = 46.1 bits (108), Expect = 1e-06
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
K++ +G+ +VGKTS + F+ + F + Y+ T+
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATI 33
Score = 41.5 bits (96), Expect = 4e-05
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ ++ G+ +VGKTS + F+ + F + Y+ T+G+DF +K R ++LQ+WD
Sbjct: 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSK---TMYLEDRTIRLQLWDT 56
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 88.1 bits (217), Expect = 3e-21
Identities = 34/168 (20%), Positives = 77/168 (45%), Gaps = 7/168 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +++ G VGK++ FV F++ Y T+ + ++ L+I D A
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSP----SVLEILDTA 59
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +++ M +Y +N G I+++ L N++SF+ + + + + +P +L+ +
Sbjct: 60 GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK---VPVILVGN 116
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
K DL + + + ++E S+K M+++ +V ++
Sbjct: 117 KVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
Score = 47.2 bits (111), Expect = 5e-07
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
K++V+G VGK++ FV F++ Y T+ + ++
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSP 50
Score = 42.2 bits (98), Expect = 3e-05
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 217
Y +++ G VGK++ FV F++ Y T+ + ++
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSP 50
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 87.3 bits (215), Expect = 7e-21
Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 8/171 (4%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ Y +++ G VGK++ +QN F+D Y T+ + +++ + L I
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET----CLLDIL 56
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+ Y M Y + +G + +F + N KSFE + Q++ + D+ +P +L
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVL 113
Query: 358 LASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ +KCDL R VE + + + Y + +IE S+K +ED+ LV I
Sbjct: 114 VGNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
Score = 47.7 bits (112), Expect = 4e-07
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
K++V+G VGK++ +QN F+D Y T+ + +++ +
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET 50
Score = 43.8 bits (102), Expect = 8e-06
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 217
Y +++ G VGK++ +QN F+D Y T+ + +++ +
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET 50
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 85.9 bits (211), Expect = 2e-20
Identities = 44/171 (25%), Positives = 85/171 (49%), Gaps = 4/171 (2%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ + +++ G++ VGK+S V FV N F +N + T+G F T+ VK +IW
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQ---RVTINEHTVKFEIW 57
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+R+ ++ +YY+N+ ++++D+T +SF W +L + D L
Sbjct: 58 DTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNK 117
Query: 358 LASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + +R+V E E + + + + E S+K + D + ++I
Sbjct: 118 IDMLQEGGERKVAREEGEKLAEEKG-LLFFETSAKTGENVNDVFLGIGEKI 167
Score = 47.7 bits (112), Expect = 4e-07
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142
T +K++++G++ VGK+S V FV N F +N + T+G
Sbjct: 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37
Score = 40.8 bits (94), Expect = 8e-05
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW- 227
S +++ G++ VGK+S V FV N F +N + T+G F T+ ++ ++ +
Sbjct: 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61
Query: 228 --DIYCTLSPIQIPTYPILITGDSTVGKT 254
L+ D T ++
Sbjct: 62 QERFASLAPMYYRNAQAALVVYDVTKPQS 90
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 85.8 bits (211), Expect = 2e-20
Identities = 42/172 (24%), Positives = 85/172 (49%), Gaps = 7/172 (4%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
+I + +++ G+S VGK+S V FV+ +F + ++T+G F T+ VK +I
Sbjct: 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ---TVCLDDTTVKFEI 59
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
WD AGQ+RY ++ +YY+ + I+++D+TN +SF W + +
Sbjct: 60 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE----LQRQASPNIVIA 115
Query: 357 LLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
L +K DL +++ + N + ++E S+K + + + + ++
Sbjct: 116 LSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
Score = 43.9 bits (102), Expect = 8e-06
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142
K++++G+S VGK+S V FV+ +F + ++T+G
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIG 40
Score = 40.4 bits (93), Expect = 1e-04
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG 204
+ + +++ G+S VGK+S V FV+ +F + ++T+G
Sbjct: 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIG 40
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 83.9 bits (206), Expect = 2e-19
Identities = 39/191 (20%), Positives = 75/191 (39%), Gaps = 21/191 (10%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
T ++ GD VGKT + + NKF Y TV +++ GG P L ++D
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV----TVMIGGEPYTLGLFDT 58
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
AGQ+ Y + + Y +D ++ F + + SFE+V + + P LL+
Sbjct: 59 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT----PFLLVG 114
Query: 360 SKCDLPDRQVEIN-------------EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVD 406
++ DL D I E + + ++E S+ +++ + +
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 407 RIICSKRMEEE 417
+ ++
Sbjct: 175 AALEPPEPKKS 185
Score = 51.9 bits (123), Expect = 2e-08
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
+K +V+GD VGKT + + NKF Y TV +++ ++ +
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP 50
Score = 45.4 bits (106), Expect = 3e-06
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 217
++ GD VGKT + + NKF Y TV +++ ++ +
Sbjct: 6 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP 50
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 83.2 bits (204), Expect = 2e-19
Identities = 40/176 (22%), Positives = 86/176 (48%), Gaps = 10/176 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +++ G VGK++ F+Q+ F+ +Y T+ ++ R +L I D A
Sbjct: 6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTK----QCVIDDRAARLDILDTA 61
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+ + M Y + +G +++F +T+R SFE + +++ + D P +L+ +
Sbjct: 62 GQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRD---EFPMILIGN 118
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
K DL ++ E + ++++E S+K + ++ + + LV I ++ +E
Sbjct: 119 KADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI---RKFQE 171
Score = 46.2 bits (108), Expect = 1e-06
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGV 143
+++V+G VGK++ F+Q+ F+ +Y T+
Sbjct: 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40
Score = 41.2 bits (95), Expect = 7e-05
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGV 205
Y +++ G VGK++ F+Q+ F+ +Y T+
Sbjct: 6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 82.7 bits (203), Expect = 3e-19
Identities = 36/169 (21%), Positives = 82/169 (48%), Gaps = 8/169 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +++ G VGK++ FVQ F++ Y T+ + ++ + L+I D A
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQ----CMLEILDTA 59
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G +++ M +Y +N G +++ +T + +F + + + ++ +P +L+ +
Sbjct: 60 GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED---VPMILVGN 116
Query: 361 KCD-LPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
KCD +R V + + + Q+ +++E S+K + + + LV +I
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
Score = 48.4 bits (114), Expect = 2e-07
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
K++V+G VGK++ FVQ F++ Y T+ + ++ +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQ 50
Score = 43.4 bits (101), Expect = 1e-05
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 217
Y +++ G VGK++ FVQ F++ Y T+ + ++ +
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQ 50
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 82.8 bits (203), Expect = 3e-19
Identities = 40/182 (21%), Positives = 83/182 (45%), Gaps = 9/182 (4%)
Query: 235 PIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 294
P T+ +++ G VGK++ F+Q+ F+ +Y T+ ++ G P +L
Sbjct: 1 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTK----ICSVDGIPARL 56
Query: 295 QIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP 354
I D AGQ+ + M Y + G +++F + +R+SF V + + + P
Sbjct: 57 DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK---DRDDFP 113
Query: 355 CLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
+L+ +K DL ++ + + +++ E S+K L ++++ LV + K
Sbjct: 114 VVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR--KYQ 171
Query: 415 EE 416
E+
Sbjct: 172 EQ 173
Score = 45.0 bits (105), Expect = 4e-06
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKN 139
P PS+ K++V+G VGK++ F+Q+ F+ +Y
Sbjct: 1 PPPSE---THKLVVVGGGGVGKSALTIQFIQSYFVSDYDP 37
Score = 41.2 bits (95), Expect = 7e-05
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 165 PIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKN 201
P + ++ +++ G VGK++ F+Q+ F+ +Y
Sbjct: 1 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDP 37
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 81.1 bits (199), Expect = 1e-18
Identities = 36/171 (21%), Positives = 81/171 (47%), Gaps = 7/171 (4%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+ + +++ G VGK++ F+ ++F+++Y+ T + G V++ I
Sbjct: 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK----KVVLDGEEVQIDIL 57
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+ Y + Y+++ +G + +F +T +SF + ++ + +N +P LL
Sbjct: 58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN---VPFLL 114
Query: 358 LASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ +K DL D++ E ++++E S+K ++ L+ I
Sbjct: 115 VGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
Score = 46.1 bits (108), Expect = 1e-06
Identities = 9/36 (25%), Positives = 23/36 (63%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
K++++G VGK++ F+ ++F+++Y+ T +
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY 41
Score = 41.1 bits (95), Expect = 7e-05
Identities = 8/39 (20%), Positives = 22/39 (56%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 207
+ +++ G VGK++ F+ ++F+++Y+ T +
Sbjct: 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY 41
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 78.9 bits (193), Expect = 6e-18
Identities = 47/173 (27%), Positives = 90/173 (52%), Gaps = 10/173 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
+PTY +++ GD VGK++ F Q F+ +Y T+ + H + + L +
Sbjct: 2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLK----HTEIDNQWAILDVL 57
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
D AGQ+ + M Y + DG +I++ +T++ SFE V ++ + + P +L
Sbjct: 58 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK---DRESFPMIL 114
Query: 358 LASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKE-HLMIEDSMNFLVDRI 408
+A+K DL R+V ++ + + +YN + +IE S+K+ L ++ + + LV I
Sbjct: 115 VANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVI 166
Score = 44.6 bits (104), Expect = 5e-06
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
K++V+GD VGK++ F Q F+ +Y T+ +
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY 41
Score = 43.1 bits (100), Expect = 1e-05
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 207
P+Y +++ GD VGK++ F Q F+ +Y T+ +
Sbjct: 3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY 41
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 78.9 bits (193), Expect = 7e-18
Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 21/181 (11%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++ GD VGKT + + N F Y TV ++S + G+PV L +WD AGQ
Sbjct: 8 CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA----NVMVDGKPVNLGLWDTAGQ 63
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+ Y + + Y +D +I F L + SFE+V + + + P +L+ +K
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPE----VRHHCPNTPIILVGTKL 119
Query: 363 DLPDRQVEINEI-------------EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
DL D + I ++ A+ + + ++E S+ ++ + + ++
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179
Query: 410 C 410
C
Sbjct: 180 C 180
Score = 45.4 bits (106), Expect = 3e-06
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146
+K +V+GD VGKT + + N F Y TV ++S
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS 43
Score = 41.5 bits (96), Expect = 5e-05
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYC 231
++ GD VGKT + + N F Y TV ++S + G+PV L +WD
Sbjct: 8 CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA----NVMVDGKPVNLGLWDTAG 62
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 78.1 bits (191), Expect = 2e-17
Identities = 36/180 (20%), Positives = 75/180 (41%), Gaps = 21/180 (11%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++ GD VGKT + + + F + Y TV D GG+ L ++D AGQ
Sbjct: 12 CVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAV---SVTVGGKQYLLGLYDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+ Y + + Y +D +I F + N SF++V + + + +P LL+ ++
Sbjct: 68 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN----VPFLLIGTQI 123
Query: 363 DLPD-------------RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
DL D + + + + + + + ++E S+ ++ + + I+
Sbjct: 124 DLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 183
Score = 46.9 bits (110), Expect = 1e-06
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ 167
LK +V+GD VGKT + + + F + Y TV D ++ + Q
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 67
Score = 40.0 bits (92), Expect = 2e-04
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 217
++ GD VGKT + + + F + Y TV D ++
Sbjct: 12 CVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGK 55
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 76.2 bits (186), Expect = 6e-17
Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 7/166 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+ + GD+ VGK+S + FV++ F N T+G F TK +Y K IWD AG
Sbjct: 7 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTK---TVQYQNELHKFLIWDTAGL 63
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+R+ ++ +YY+ S II++D+T ++F ++ W + + + +KC
Sbjct: 64 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE----LRQHGPPSIVVAIAGNKC 119
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
DL D + + ++E S+K + I + + RI
Sbjct: 120 DLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165
Score = 45.4 bits (106), Expect = 2e-06
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
LK+ ++GD+ VGK+S + FV++ F N T+G F
Sbjct: 5 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASF 41
Score = 40.4 bits (93), Expect = 1e-04
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY---------GGRPVK 223
+ + GD+ VGK+S + FV++ F N T+G F TK + ++ G
Sbjct: 7 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF 66
Query: 224 LQIWDIYCTLSPIQIPTYPI 243
+ +Y S I Y I
Sbjct: 67 RALAPMYYRGSAAAIIVYDI 86
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 75.5 bits (184), Expect = 7e-17
Identities = 22/166 (13%), Positives = 61/166 (36%), Gaps = 8/166 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKT+ + + + + + + +WD+ GQ
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--------VETVEYKNISFTVWDVGGQ 54
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
D+ + R Y+QN+ G I + D +R+ + + ++ L + +L
Sbjct: 55 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+ + +++ ++ + + + +++L +++
Sbjct: 115 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
Score = 41.2 bits (95), Expect = 6e-05
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNT 140
++IL++G GKT+ + + +
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 32
Score = 36.2 bits (82), Expect = 0.003
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 4/75 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNT----VGVDFSTKLLSHKKYGGRPVKLQIWD 228
IL+ G GKT+ + + + V++ + GG+ +W
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 62
Query: 229 IYCTLSPIQIPTYPI 243
Y + I
Sbjct: 63 HYFQNTQGLIFVVDS 77
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 75.8 bits (185), Expect = 1e-16
Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 14/171 (8%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
ILI G GKT+ + + K T+G + T + +KL +WD+
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVET-------LSYKNLKLNVWDLG 69
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ R YY ++ I + D T++ + + H + + L + A+L A+
Sbjct: 70 GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVF---AN 126
Query: 361 KCDLPDRQVEINEIEAVCHQY---NFMSWIEVSSKEHLMIEDSMNFLVDRI 408
K D P + + S + S+ + I + +++L+D I
Sbjct: 127 KQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177
Score = 38.4 bits (88), Expect = 7e-04
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
L+IL++G GKT+ + + K T+G + T
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETL 56
Score = 38.0 bits (87), Expect = 0.001
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYC 231
ILI G GKT+ + + K T+G + T + +KL +WD+
Sbjct: 20 ILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVET-------LSYKNLKLNVWDLGG 70
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 75.1 bits (183), Expect = 1e-16
Identities = 44/167 (26%), Positives = 88/167 (52%), Gaps = 8/167 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+++ G+ VGK+S +Q + + F +YK T+GVDF + + V+L +WD AGQ
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLER---QIQVNDEDVRLMLWDTAGQ 61
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+ + +++ YY+ + C+++F T+R+SFE++ W+ + ++ +P L+ +K
Sbjct: 62 EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-----GDIPTALVQNKI 116
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
DL D NE + + + S KE L + + +L ++ +
Sbjct: 117 DLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 163
Score = 43.9 bits (102), Expect = 6e-06
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKN 139
+K++V+G+ VGK+S +Q + + F +YK
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKK 33
Score = 37.4 bits (85), Expect = 0.001
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+++ G+ VGK+S +Q + + F +YK T+GVDF + + V+L +WD
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLER---QIQVNDEDVRLMLWDT 58
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 75.1 bits (183), Expect = 2e-16
Identities = 37/181 (20%), Positives = 76/181 (41%), Gaps = 22/181 (12%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I++ GDS GKT+ + F ++ F +NY TV +++ + + ++L +WD +G
Sbjct: 5 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA----SFEIDTQRIELSLWDTSGS 60
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
Y + + Y +SD +I FD++ ++ +SV++ + LL+ K
Sbjct: 61 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF----CPNTKMLLVGCKS 116
Query: 363 DLPD-------------RQVEINEIEAVCHQYNFMSWIEVSSKE-HLMIEDSMNFLVDRI 408
DL V ++ + Q ++IE S+ + + D +
Sbjct: 117 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 176
Query: 409 I 409
+
Sbjct: 177 V 177
Score = 47.3 bits (111), Expect = 5e-07
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
KI+V+GDS GKT+ + F ++ F +NY TV ++
Sbjct: 3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY 39
Score = 41.6 bits (96), Expect = 5e-05
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 207
I++ GDS GKT+ + F ++ F +NY TV ++
Sbjct: 5 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY 39
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 74.3 bits (181), Expect = 2e-16
Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 9/160 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ I++ GDS VGKT F +F D + T+GVDF + G +K+Q+WD A
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRER---AVDIDGERIKIQLWDTA 59
Query: 301 GQDRYICMSRV-YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
GQ+R+ YY+N + ++D+TN SF S+ W + + ++ +P +L+
Sbjct: 60 GQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND---IPRILVG 116
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398
+KCDL QV + + ++ M E S+K +
Sbjct: 117 NKCDLRSAIQVPTDLAQKFADTHS-MPLFETSAKNPNDND 155
Score = 49.6 bits (117), Expect = 8e-08
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147
+ KI+VIGDS VGKT F +F D + T+GVDF
Sbjct: 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRE 41
Score = 43.5 bits (101), Expect = 9e-06
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIY 230
+ I++ GDS VGKT F +F D + T+GVDF + G +K+Q+WD
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRER---AVDIDGERIKIQLWDTA 59
Query: 231 C 231
Sbjct: 60 G 60
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 73.9 bits (180), Expect = 3e-16
Identities = 32/180 (17%), Positives = 73/180 (40%), Gaps = 21/180 (11%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I GD GKT + +++F + Y TV ++ + G+ V+L +WD AG
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA----DIEVDGKQVELALWDTAGL 60
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+ Y + + Y ++D ++ F + + S E++ + + +P +L+ +K
Sbjct: 61 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE----VKHFCPNVPIILVGNKK 116
Query: 363 DLPDRQVEIN-------------EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
DL + + E + ++ ++E S+K + + +
Sbjct: 117 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 176
Score = 48.9 bits (115), Expect = 2e-07
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
K++++GD GKT + +++F + Y TV ++
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY 39
Score = 43.5 bits (101), Expect = 1e-05
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 207
++I GD GKT + +++F + Y TV ++
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY 39
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 72.8 bits (177), Expect = 9e-16
Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 14/169 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ G GKT+ + KF +T+ K R KL IWD+ GQ
Sbjct: 5 LLMLGLDNAGKTTIL-----KKFNGEDVDTISPTLGFN---IKTLEHRGFKLNIWDVGGQ 56
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
R Y++++DG I + D +R+ + + L + L L+ A+K
Sbjct: 57 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---TLLIFANKQ 113
Query: 363 DLPDRQVE---INEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
DLP +E + + S+ + +++L+D I
Sbjct: 114 DLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162
Score = 37.7 bits (86), Expect = 8e-04
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
L++L++G GKT+ + KF +T+
Sbjct: 3 LRLLMLGLDNAGKTTIL-----KKFNGEDVDTISPTL 34
Score = 32.3 bits (72), Expect = 0.056
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 207
+L+ G GKT+ + KF +T+
Sbjct: 5 LLMLGLDNAGKTTIL-----KKFNGEDVDTISPTL 34
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 72.3 bits (176), Expect = 1e-15
Identities = 29/181 (16%), Positives = 61/181 (33%), Gaps = 12/181 (6%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
IP + + GD+ GK+S + F+ + K G+ + I
Sbjct: 3 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKE-----MLVDGQTHLVLIR 57
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
+ + +D I +F L + SF++V + L S G + L+
Sbjct: 58 -----EEAGAPDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALV 112
Query: 358 LAS--KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
R V A+C S+ E + L ++ + +++ ++ +
Sbjct: 113 GTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQ 172
Query: 416 E 416
+
Sbjct: 173 Q 173
Score = 45.4 bits (106), Expect = 2e-06
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
L++ V+GD+ GK+S + F+ + K L+ + +
Sbjct: 6 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTH 52
Score = 40.7 bits (94), Expect = 1e-04
Identities = 9/49 (18%), Positives = 19/49 (38%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 217
P + + GD+ GK+S + F+ + K L+ + +
Sbjct: 4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTH 52
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 71.6 bits (174), Expect = 2e-15
Identities = 34/168 (20%), Positives = 70/168 (41%), Gaps = 6/168 (3%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y + + G VGK+S V FV+ F ++Y TV + LQI D
Sbjct: 3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ----VISCDKSICTLQITDTT 58
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G ++ M R+ I+++ +T+R+S E + + + +P +L+ +
Sbjct: 59 GSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIK--GDVESIPIMLVGN 116
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
KCD + + + +++E S+K + +++ L++
Sbjct: 117 KCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 164
Score = 46.1 bits (108), Expect = 1e-06
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
++ V G VGK+S V FV+ F ++Y TV
Sbjct: 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV 35
Score = 41.1 bits (95), Expect = 7e-05
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTV 203
Y + + G VGK+S V FV+ F ++Y TV
Sbjct: 3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV 35
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 70.8 bits (172), Expect = 4e-15
Identities = 47/175 (26%), Positives = 88/175 (50%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ +++ GD GKT++V+ + +F Y T+GV+ P+K +WD A
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL---VFHTNRGPIKFNVWDTA 60
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+++ + YY + IIMFD+T+R ++++V W DL C +P +L +
Sbjct: 61 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGN 115
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
K D+ DR+V+ I H+ + + ++S+K + E +L ++I +E
Sbjct: 116 KVDIKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 168
Score = 47.7 bits (112), Expect = 4e-07
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147
K++++GD GKT++V+ + +F Y T+GV+
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP 42
Score = 43.1 bits (100), Expect = 1e-05
Identities = 11/61 (18%), Positives = 25/61 (40%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIY 230
+ +++ GD GKT++V+ + +F Y T+GV+ + + +
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 231 C 231
Sbjct: 64 K 64
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 70.5 bits (171), Expect = 4e-15
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 13/169 (7%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+ + G GKT++V +F ++ TVG + +K V +++WDI GQ
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFN-------MRKITKGNVTIKLWDIGGQ 57
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
R+ M Y + + M D +++ E+ H+L K L P L+L +K
Sbjct: 58 PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGI---PVLVLGNKR 114
Query: 363 DLPDRQVEINEIEAVCHQY---NFMSWIEVSSKEHLMIEDSMNFLVDRI 408
DLP E IE + + +S KE I+ ++ +L+
Sbjct: 115 DLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163
Score = 42.8 bits (99), Expect = 2e-05
Identities = 9/47 (19%), Positives = 21/47 (44%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
+++ ++G GKT++V +F ++ TVG + +
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTI 49
Score = 38.1 bits (87), Expect = 6e-04
Identities = 10/59 (16%), Positives = 20/59 (33%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYC 231
+ + G GKT++V +F ++ TVG + + + Q
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSM 63
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 70.4 bits (171), Expect = 6e-15
Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 14/169 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKT+ + + + + + + VK +WD+ GQ
Sbjct: 15 ILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--------FNVETVTYKNVKFNVWDVGGQ 66
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
D+ + R YY + G I + D +R + Q H + + + + +L A+K
Sbjct: 67 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF---ANKQ 123
Query: 363 DLPDRQVEINEIEAVCHQY---NFMSWIEVSSKEHLMIEDSMNFLVDRI 408
DLPD E + + + + + +L
Sbjct: 124 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172
Score = 37.2 bits (85), Expect = 0.002
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNT 140
++IL++G GKT+ + + +
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTV 44
Score = 31.8 bits (71), Expect = 0.082
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNT 202
IL+ G GKT+ + + +
Sbjct: 15 ILMLGLDAAGKTTILYKLKLGQSVTTIPTV 44
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 70.0 bits (170), Expect = 9e-15
Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 14/169 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GKT+ ++ + T G + K + KL +WDI GQ
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNI-------KSVQSQGFKLNVWDIGGQ 70
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+ R Y++N+D I + D +RK FE Q +L + L +P L+ A+K
Sbjct: 71 RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSC---VPVLIFANKQ 127
Query: 363 DLPDRQVEINEIEAVCHQY---NFMSWIEVSSKEHLMIEDSMNFLVDRI 408
DL E + S+ ++D MN++ +
Sbjct: 128 DLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
Score = 34.5 bits (78), Expect = 0.011
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNT 140
++IL++G GKT+ ++
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQ 48
Score = 29.5 bits (65), Expect = 0.58
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNT 202
IL+ G GKT+ ++
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHITPTQ 48
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 68.9 bits (167), Expect = 2e-14
Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 10/173 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+ I G + VGK++ V F+ +F+ Y T+ + V ++I D AGQ
Sbjct: 5 LAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH----QATIDDEVVSMEILDTAGQ 60
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+ I + + +G ++++D+T+R SFE V+ K+ LD N ++ +K
Sbjct: 61 EDTIQREG-HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILV---GNKA 116
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKE-HLMIEDSMNFLVDRIICSKRM 414
DL + E ++ E S+ I + L R + +RM
Sbjct: 117 DLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELC-REVRRRRM 168
Score = 48.5 bits (114), Expect = 2e-07
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
+K+ + G + VGK++ V F+ +F+ Y T+
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL 35
Score = 45.0 bits (105), Expect = 4e-06
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCT 232
+ I G + VGK++ V F+ +F+ Y T+ + V ++I D
Sbjct: 5 LAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH----QATIDDEVVSMEILDTAGQ 60
Query: 233 LSPIQIPTY 241
IQ +
Sbjct: 61 EDTIQREGH 69
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 64.4 bits (155), Expect = 7e-13
Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 7/172 (4%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
Q + I I G +VGK+S FV+ +F+D+Y T+ F+ + G+ LQ+
Sbjct: 1 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLI----TVNGQEYHLQL 56
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
D AGQD Y + Y + +G I+++ +T+ KSFE + L P +
Sbjct: 57 VDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQI---PIM 113
Query: 357 LLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
L+ +K DL +V E + +++E S+KE+ D ++
Sbjct: 114 LVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 165
Score = 44.3 bits (103), Expect = 5e-06
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 154
KI ++G +VGK+S FV+ +F+D+Y T+ F+ + + +
Sbjct: 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQ 50
Score = 42.0 bits (97), Expect = 3e-05
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 216
Q+ S I I G +VGK+S FV+ +F+D+Y T+ F+ + + +
Sbjct: 1 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQ 50
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 63.9 bits (154), Expect = 1e-12
Identities = 26/171 (15%), Positives = 63/171 (36%), Gaps = 14/171 (8%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
+ ++I G GKT+ + F N+ + T + ++ + +WDI
Sbjct: 16 HKVIIVGLDNAGKTTILYQFSMNEVVHTS--------PTIGSNVEEIVINNTRFLMWDIG 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
GQ+ YY N++ I++ D T+R+ + + + + L L+ A+
Sbjct: 68 GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLR---KAGLLIFAN 124
Query: 361 KCDLPDRQVEINEIEAVCHQY---NFMSWIEVSSKEHLMIEDSMNFLVDRI 408
K D+ + + + + + + + +++ R+
Sbjct: 125 KQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175
Score = 36.1 bits (82), Expect = 0.003
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNY 137
K++++G GKT+ + F N+ +
Sbjct: 16 HKVIIVGLDNAGKTTILYQFSMNEVVHTS 44
Score = 33.1 bits (74), Expect = 0.032
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYC 231
++I G GKT+ + F N+ + T + ++ + +WDI
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNEVVHTS--------PTIGSNVEEIVINNTRFLMWDIGG 68
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 63.6 bits (153), Expect = 1e-12
Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 21/173 (12%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L G GKT+ + ++ T+ + ++ +K +D+ G
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPT---SEELAIGNIKFTTFDLGGH 54
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+ + + Y+ +G + + D + + F+ L + L + P ++L +K
Sbjct: 55 IQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDV---PFVILGNKI 111
Query: 363 DLPDRQVEINEIEAV----------CHQYNFMSWIEVSSKEHLMIEDSMNFLV 405
D P+ E A+ + S ++ +L
Sbjct: 112 DAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164
Score = 37.8 bits (86), Expect = 8e-04
Identities = 7/58 (12%), Positives = 16/58 (27%), Gaps = 5/58 (8%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ 167
K+L +G GKT+ + ++ T+ + +
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGH 54
Score = 34.7 bits (78), Expect = 0.011
Identities = 8/59 (13%), Positives = 20/59 (33%), Gaps = 8/59 (13%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYC 231
+L G GKT+ + ++ T+ + ++ +K +D+
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPT---SEELAIGNIKFTTFDLGG 53
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 63.1 bits (152), Expect = 4e-12
Identities = 15/158 (9%), Positives = 44/158 (27%), Gaps = 6/158 (3%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L G GKT + ++ D ++ + +++ + + I +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAIYKVNNNRGNSLTL---IDLPGHE 58
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+ + ++ + + D + V + L+ +K
Sbjct: 59 SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQ 118
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS 400
D+ I+ + + S ++ S
Sbjct: 119 DIAMA-KSAKLIQQQL-EKELNTLRVTRSAAPSTLDSS 154
Score = 41.5 bits (96), Expect = 7e-05
Identities = 6/46 (13%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
+L +G GKT + ++ D ++ + +++ +
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAIYKVNNNRG 46
Score = 39.2 bits (90), Expect = 4e-04
Identities = 6/59 (10%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYC 231
+L G GKT + ++ D ++ + +++ + +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAIYKVNNNRGNSLTLIDLPGHESL 60
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 62.2 bits (150), Expect = 7e-12
Identities = 18/160 (11%), Positives = 54/160 (33%), Gaps = 17/160 (10%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
IL+ G GK+++++ + + T G+ + + V ++ D+ GQ
Sbjct: 5 ILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHE-------YDFEIKNVPFKMVDVGGQ 54
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHD-------LDSKCILDNGAMLPC 355
+ + + + + + + ++ + +
Sbjct: 55 RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114
Query: 356 LLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHL 395
+L +K DL + +V++ I+ ++ ++ L
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL 154
Score = 44.5 bits (104), Expect = 7e-06
Identities = 21/169 (12%), Positives = 53/169 (31%), Gaps = 11/169 (6%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ 167
++KIL++G GK+++++ + + T G+ + + + G +
Sbjct: 2 LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYDFEIKNVPFKMVDVGG---QR 55
Query: 168 TPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH--KKYGGRPVKLQ 225
+ DS V ++ L + T + S + V +
Sbjct: 56 SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115
Query: 226 IWDIYCTLSPIQIPTYPILITGDSTVGKTSYVQG---FVQNKFLDNYKN 271
++ L ++ I G ++ F+ F ++
Sbjct: 116 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRD 164
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 60.5 bits (145), Expect = 2e-11
Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 14/169 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
ILI G GKT+ + + + + + +K Q+WD+ G
Sbjct: 8 ILILGLDGAGKTTILYRLQVGEVVTTIPTIGFN--------VETVTYKNLKFQVWDLGGL 59
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
R YY N+D I + D +R + ++ A+K
Sbjct: 60 TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVA---MLEEEELRKAILVVFANKQ 116
Query: 363 DLPDRQVEINEIEAVCHQY---NFMSWIEVSSKEHLMIEDSMNFLVDRI 408
D+ ++ + S+ + ++++M +LV+ +
Sbjct: 117 DMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165
Score = 38.5 bits (88), Expect = 5e-04
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNY 137
++IL++G GKT+ + + +
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEVVTTI 34
Score = 33.1 bits (74), Expect = 0.036
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNY 199
ILI G GKT+ + + +
Sbjct: 8 ILILGLDGAGKTTILYRLQVGEVVTTI 34
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 60.9 bits (146), Expect = 2e-11
Identities = 20/184 (10%), Positives = 55/184 (29%), Gaps = 28/184 (15%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
++ G GKT+ + ++ + + ++ + +D+
Sbjct: 14 GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHP--------TSEELTIAGMTFTTFDLG 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
G + + + Y +G + + D + + + L + + N +P L+L +
Sbjct: 66 GHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIAN---VPILILGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNF----------------MSWIEVSSKEHLMIEDSMNFL 404
K D P + + + Y + S + + ++
Sbjct: 123 KIDRP-EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWM 181
Query: 405 VDRI 408
I
Sbjct: 182 AQYI 185
Score = 36.6 bits (83), Expect = 0.002
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNY 137
K++ +G GKT+ + ++ +
Sbjct: 14 GKLVFLGLDNAGKTTLLHMLKDDRLGQHV 42
Score = 32.4 bits (72), Expect = 0.072
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNY 199
++ G GKT+ + ++ +
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDDRLGQHV 42
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 59.2 bits (142), Expect = 6e-11
Identities = 24/180 (13%), Positives = 58/180 (32%), Gaps = 23/180 (12%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ G GK+++++ + T G+ L + ++ D+ GQ
Sbjct: 5 LLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYPFDLQSVIF-------RMVDVGGQ 55
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKS-----------FESVVQWKHDLDSKCILDNGA 351
++N + + L+ ES ++ + +
Sbjct: 56 RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN--- 112
Query: 352 MLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
L L K L ++ + + ++ + + + L + +N D+II S
Sbjct: 113 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYS 172
Score = 46.1 bits (108), Expect = 2e-06
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
LK+L++G GK+++++ + T G+ L +
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYPFDLQSVIF 47
Score = 42.6 bits (99), Expect = 3e-05
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYC 231
+L+ G GK+++++ + T G+ L + V Q +
Sbjct: 5 LLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRK 61
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 57.5 bits (138), Expect = 4e-10
Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 18/142 (12%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
T+ +L+ G GK++ V+ T G+ + K V ++D+
Sbjct: 6 THRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETK--FQVDK-----VNFHMFDV 54
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLD-----SKCILDNGAM-- 352
GQ + + I + ++ + L K I +N +
Sbjct: 55 GGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT 114
Query: 353 LPCLLLASKCDLPDRQVEINEI 374
+ +L +K DL +V +
Sbjct: 115 ISVILFLNKQDLLAEKVLAGKS 136
Score = 39.0 bits (90), Expect = 5e-04
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147
++L++G GK++ V+ T G+ +
Sbjct: 8 RLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETK 41
Score = 35.9 bits (82), Expect = 0.005
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
++ +L+ G GK++ V+ T G+ + + + V Q +
Sbjct: 6 THRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETKFQVDKVNFHMFDVGGQRDER 61
Query: 230 YC 231
Sbjct: 62 RK 63
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 54.4 bits (129), Expect = 2e-09
Identities = 19/168 (11%), Positives = 51/168 (30%), Gaps = 4/168 (2%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +++ G+ VGK++ F + V + + + G + + D+
Sbjct: 4 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYE--RTLMVDGESATIILLDMW 61
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
+ ++ ++ + +P +L+ +
Sbjct: 62 ENKGENEWLHDHCMQVGDAYLIVYSITDRASF--EKASELRIQLRRARQTEDIPIILVGN 119
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
K DL + C +IE S+ +++ +V ++
Sbjct: 120 KSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167
Score = 39.0 bits (89), Expect = 4e-04
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
T ++++IG+ VGK++ F + V
Sbjct: 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV 36
Score = 33.6 bits (75), Expect = 0.025
Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIY 230
Y +++ G+ VGK++ F + V + + + G + + D++
Sbjct: 4 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYE--RTLMVDGESATIILLDMW 61
Query: 231 C 231
Sbjct: 62 E 62
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 54.0 bits (128), Expect = 3e-09
Identities = 31/177 (17%), Positives = 71/177 (40%), Gaps = 10/177 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
Y +L+ G VGK++ + F + + + ++ ++ L ++DI
Sbjct: 2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEA-----SLMVYDIW 56
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
QD + D +I++ +T++ SFE + + L D+ ++ +
Sbjct: 57 EQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSD 116
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
R+V ++E A ++ +IE S+ H ++ +V +I R + +
Sbjct: 117 LVR--SREVSVDEGRACAVVFD-CKFIETSAALHHNVQALFEGVVRQIR--LRRDSK 168
Score = 38.9 bits (89), Expect = 3e-04
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147
V K+L++G VGK++ + F + + +
Sbjct: 1 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRS 40
Score = 35.1 bits (79), Expect = 0.006
Identities = 9/67 (13%), Positives = 22/67 (32%)
Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIY 230
Y +L+ G VGK++ + F + + + ++ ++ + D
Sbjct: 2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 61
Query: 231 CTLSPIQ 237
L
Sbjct: 62 RWLPGHC 68
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 52.7 bits (125), Expect = 1e-08
Identities = 18/177 (10%), Positives = 51/177 (28%), Gaps = 20/177 (11%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+L+ G GK++ V + ++ G+ + + + +++D+ GQ
Sbjct: 5 LLLLGAGESGKSTIV-----KQMKIIHEAGTGIVE-------THFTFKDLHFKMFDVGGQ 52
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCIL-------DNGAMLPC 355
++ I L++ + + + + L
Sbjct: 53 RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 112
Query: 356 LLLA-SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
+L K ++ + ++ E ++ ED + I +
Sbjct: 113 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYT 169
Score = 39.9 bits (92), Expect = 2e-04
Identities = 9/52 (17%), Positives = 17/52 (32%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
+K+L++G GK++ V+ F GG+
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRS 54
Score = 37.2 bits (85), Expect = 0.002
Identities = 10/71 (14%), Positives = 19/71 (26%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCT 232
+L+ G GK++ V+ F GG+ + + W
Sbjct: 5 LLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFE 64
Query: 233 LSPIQIPTYPI 243
I +
Sbjct: 65 GVTAIIFCVAL 75
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 52.3 bits (124), Expect = 2e-08
Identities = 24/202 (11%), Positives = 57/202 (28%), Gaps = 10/202 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I+I G GKTS + + + TV + G V
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY 61
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+ ++ + K + ++ D+ S + L+ +K
Sbjct: 62 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS 121
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMI----EDSMNFLVDRIICSKRMEEEA 418
+L + +A+ + + S + ED +D + + +
Sbjct: 122 ELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFKFAN 181
Query: 419 VERKSSIRLSEETLRDDQPKKL 440
+E + E ++ + +
Sbjct: 182 LEAS--VVAFEGSINKRKISQW 201
Score = 29.2 bits (64), Expect = 0.68
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 111 ILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
I++ G GKTS + + + TV +
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDGS 46
Score = 28.1 bits (61), Expect = 1.8
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 217
I+I G GKTS + + + TV +
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDGS 46
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 40.5 bits (93), Expect = 1e-04
Identities = 22/169 (13%), Positives = 48/169 (28%), Gaps = 4/169 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
I + G S VGK+S++ + K L + G T V + + A
Sbjct: 26 IALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQ-TLNFYIINDELHFVDVPGYGFAKV 84
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+ + + + + +D +P +++A+K
Sbjct: 85 SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144
Query: 363 DL---PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
D + + I SS+ +++ + I
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 37.4 bits (85), Expect = 0.001
Identities = 24/180 (13%), Positives = 60/180 (33%), Gaps = 11/180 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+LI G VGK++ NK + K V + + K
Sbjct: 3 VLIVGRPNVGKSTLF-----NKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCG 57
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+ + + + M + F + + + + D +
Sbjct: 58 VFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVAN 117
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
+ + E++ + F I VS++ ++ ++ +++ II K++EE+ ++ +
Sbjct: 118 KAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDT----MLETII--KKLEEKGLDLE 171
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 35.5 bits (80), Expect = 0.005
Identities = 20/166 (12%), Positives = 50/166 (30%), Gaps = 8/166 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
++I G GK+S + + + G G + +
Sbjct: 4 VVIAGRPNAGKSSLLNALAGREAAI-VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 62
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+ + + L + ++ + I A LP ++ +K
Sbjct: 63 SDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKA 122
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
D+ + ++E+ N + I +S++ ++ N L +
Sbjct: 123 DITGETLGMSEV-------NGHALIRLSARTGEGVDVLRNHLKQSM 161
Score = 28.2 bits (61), Expect = 1.3
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 109 LKILVIGDSTVGKTSYVQGFVQNKF 133
+K+++ G GK+S + +
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREA 26
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 35.1 bits (80), Expect = 0.015
Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 16/170 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+ +TG++ GK+S++ + GV T K+ P + WD+ G
Sbjct: 59 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIP-NVVFWDLPGI 117
Query: 303 DRYICMSRVY---YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
Y + + + R K+D+D + +
Sbjct: 118 GSTNFPPDTYLEKMKFYEYDFFIIISATRF-------KKNDIDIAKAISMMKK-EFYFVR 169
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLM---IEDSMNFLVD 406
+K D D E + + + I ++ I + FL+
Sbjct: 170 TKVD-SDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLS 218
Score = 30.1 bits (67), Expect = 0.51
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSP 165
+VL + V G++ GK+S++ + GV T K+ P F
Sbjct: 54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVF-- 111
Query: 166 IQTPSY 171
P
Sbjct: 112 WDLPGI 117
Score = 27.0 bits (59), Expect = 5.7
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
+ +TG++ GK+S++ + GV T K+ P + WD+
Sbjct: 59 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIP-NVVFWDL 114
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 32.3 bits (72), Expect = 0.084
Identities = 19/185 (10%), Positives = 50/185 (27%), Gaps = 4/185 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
L++G S GKT + F+ N ++ + F T + +
Sbjct: 29 TLVSGTSGTGKTLFSIQFLYNGIIEFDEPG---VFVTFEETPQDIIKNARSFGWDLAKLV 85
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
D + +G ++ E + ++ + + +
Sbjct: 86 DEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASS 145
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
+ + M+ + + F+ D ++ R E R+
Sbjct: 146 VVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVV-ILRNVLEGERRR 204
Query: 423 SSIRL 427
++ +
Sbjct: 205 RTLEI 209
Score = 27.3 bits (59), Expect = 3.7
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKN 201
L++G S GKT + F+ N ++ +
Sbjct: 25 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEP 57
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 29.3 bits (64), Expect = 0.69
Identities = 19/144 (13%), Positives = 40/144 (27%), Gaps = 7/144 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK--LQIWDIA 300
+ I G + GK+ V NK + T ++ + + K G +A
Sbjct: 10 VAILGGESSGKSVLV-----NKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMA 64
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
+ V + + I +T + H I + + LL +
Sbjct: 65 LGHQRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNN 124
Query: 361 KCDLPDRQVEINEIEAVCHQYNFM 384
+ D + + +
Sbjct: 125 TEWVDDGLRSLGSQKQRQQFQQLL 148
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 29.3 bits (65), Expect = 1.0
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 242 PILITGDSTVGKTSYVQGFVQ 262
P+LI G+ VGKT+ V+G Q
Sbjct: 46 PVLI-GEPGVGKTAIVEGLAQ 65
Score = 28.5 bits (63), Expect = 1.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 111 ILVIGDSTVGKTSYVQGFVQ 130
++IG+ VGKT+ V+G Q
Sbjct: 46 PVLIGEPGVGKTAIVEGLAQ 65
Score = 26.9 bits (59), Expect = 5.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 173 ILITGDSTVGKTSYVQGFVQ 192
++ G+ VGKT+ V+G Q
Sbjct: 46 PVLIGEPGVGKTAIVEGLAQ 65
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 29.0 bits (63), Expect = 1.1
Identities = 25/193 (12%), Positives = 53/193 (27%), Gaps = 7/193 (3%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
+ G+ GKT L + G + + + L + + G
Sbjct: 26 TEMFGEFRTGKTQICHTLAVTCQLPIDR--GGGEGKAMYIDTEGTFRPERLLAVAERYGL 83
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
+ V Y + L + S V I+D+ L + +
Sbjct: 84 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYA----LLIVDSATALYRTDYSGRG 139
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
+L RQ+ + + + + V ++ + K + +
Sbjct: 140 ELSARQMHLARFLRMLLRLADEFGVAVVITNQVV-AQVDGAAMFAADPKKPIGGNIIAHA 198
Query: 423 SSIRLSEETLRDD 435
S+ RL R +
Sbjct: 199 STTRLYLRKGRGE 211
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 28.5 bits (62), Expect = 1.6
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNT 202
+I++T S +GK+++V+ K
Sbjct: 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKV 67
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 28.0 bits (61), Expect = 1.8
Identities = 23/194 (11%), Positives = 56/194 (28%), Gaps = 17/194 (8%)
Query: 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
PI+I+G S GK++ + K Y ++ G S R ++ D
Sbjct: 3 PIVISGPSGTGKSTLL-----KKLFAEYPDSFGFSV-----SSTTRTPRAGEVNGKDYNF 52
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
S + + SV Q + + + + + +
Sbjct: 53 VSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPE 112
Query: 362 CDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLM------IEDSMNFLVDRIICSKRME 415
+ + +E + + S + + + D++I + +
Sbjct: 113 LNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDDL- 171
Query: 416 EEAVERKSSIRLSE 429
++A + +E
Sbjct: 172 DKAYKELKDFIFAE 185
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 27.1 bits (59), Expect = 3.2
Identities = 17/188 (9%), Positives = 48/188 (25%), Gaps = 18/188 (9%)
Query: 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
+++ G VG+ + K D + + H + + +
Sbjct: 5 TLVLLGAHGVGRRHIKNTLIT-KHPDRFAYPI---------PHTTRPPKKDEENGKN--- 51
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP--CLLLA 359
Y +S + + + + + + L
Sbjct: 52 ---YYFVSHDQMMQDISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKV 108
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
+ V + N ++ KE +++ + D I + ++E
Sbjct: 109 LRTAEFAPFVVFIAAPTITPGLNEDESLQRLQKESDILQRTYAHYFDLTIINNEIDETIR 168
Query: 420 ERKSSIRL 427
+ ++ L
Sbjct: 169 HLEEAVEL 176
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 27.0 bits (59), Expect = 3.4
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
+ ++ + GD GKT+ +G +Q S ++Y + +D
Sbjct: 32 KAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVK------SPTYTLVEEYNIAGKMIYHFD 85
Query: 229 IY 230
+Y
Sbjct: 86 LY 87
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 27.1 bits (59), Expect = 3.7
Identities = 24/177 (13%), Positives = 53/177 (29%), Gaps = 17/177 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGV---DFSTKLLSHKKYGGRPVKLQIWDI 299
I +TG S GK++ D + + + L + I
Sbjct: 27 IWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIR-- 84
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
R +++++ ++ I F RK ++ Q H++ + + +
Sbjct: 85 ----RIAEVAKLFADSNSIAITSFISPYRKDRDTARQL-HEVATPGEETGLPFVEVYVDV 139
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWI----EVSSKEHLMI---EDSMNFLVDRII 409
R + +A + I E + + + E + V +II
Sbjct: 140 PVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQII 196
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 27.4 bits (59), Expect = 3.9
Identities = 24/199 (12%), Positives = 54/199 (27%), Gaps = 11/199 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY-------GGRPVKL- 294
G GKT + N + S ++ K RP ++
Sbjct: 37 TEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM 96
Query: 295 QIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP 354
Q+ + AG D + + + + + L ++D+
Sbjct: 97 QMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKL---VVIDSLTSTF 153
Query: 355 CLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
+ L +RQ ++ A ++ + V + + F + +
Sbjct: 154 RNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHI 213
Query: 415 EEEAVERKSSIRLSEETLR 433
A + +R + R
Sbjct: 214 VGHAATFRFFVRKGKGDKR 232
>d1toaa_ c.92.2.2 (A:) Periplasmic zinc binding protein TroA
{Treponema pallidum [TaxId: 160]}
Length = 277
Score = 26.9 bits (58), Expect = 4.8
Identities = 10/87 (11%), Positives = 26/87 (29%), Gaps = 1/87 (1%)
Query: 91 PRASVIGFEPRPSDAETVLK-ILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
P + D E + L++ + +T + F + + ++
Sbjct: 32 PGVDPHLYTATAGDVEWLGNADLILYNGLHLETKMGEVFSKLRGSRLVVAVSETIPVSQR 91
Query: 150 LSHKKYGGRPYGTFSPIQTPSYLILIT 176
LS ++ P+ F + +
Sbjct: 92 LSLEEAEFDPHVWFDVKLWSYSVKAVY 118
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 26.7 bits (58), Expect = 5.1
Identities = 25/212 (11%), Positives = 63/212 (29%), Gaps = 35/212 (16%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYK------------NTVGVDFSTKLLSHKKYGGR 290
+++ S GK+S +Q ++ + L + + V + + +
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMI 64
Query: 291 PVK--LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD 348
L+ ++ G + + G + D + + + + Q S
Sbjct: 65 SRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLD-IDWQGAQQIRQKMPHARSIF--- 120
Query: 349 NGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
+LP + L R + E+ A + ++L++ D
Sbjct: 121 ---ILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDDF------- 170
Query: 409 ICSKRMEEEAVERKSSIRLSEETLRDDQPKKL 440
+ A+ +I +E Q ++
Sbjct: 171 -------DTALTDLKTIIRAERLRMSRQKQRH 195
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 26.5 bits (57), Expect = 6.5
Identities = 16/117 (13%), Positives = 41/117 (35%), Gaps = 6/117 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQ---NKFLDNYKNTVGV---DFSTKLLSHKKYGGRPVKLQI 296
I ++G + GK+S VQ +D + V + D ++L+ ++
Sbjct: 5 IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFN 64
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
+D + + + ++G + + + S + + +L G +
Sbjct: 65 FDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILA 121
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 26.1 bits (56), Expect = 8.5
Identities = 19/224 (8%), Positives = 52/224 (23%), Gaps = 22/224 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST---------------KLLSHKKY 287
++ G + GKT+ F + + V +D + +
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62
Query: 288 GGRPVKLQIWDIAG--QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKC 345
G P + + ++++ + ++ D + ++ L
Sbjct: 63 GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL 122
Query: 346 ILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLV 405
+ P+ + + + I +K L+ E+
Sbjct: 123 PYPLVVY---ISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHR 179
Query: 406 DRIICSKRMEEEAVERKSSIR--LSEETLRDDQPKKLVPADKVS 447
+ S + + V +S
Sbjct: 180 KYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLS 223
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 25.7 bits (55), Expect = 8.6
Identities = 5/15 (33%), Positives = 12/15 (80%)
Query: 109 LKILVIGDSTVGKTS 123
L+++++G VGK++
Sbjct: 1 LRMVIVGKPNVGKST 15
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.399
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,636,676
Number of extensions: 75725
Number of successful extensions: 593
Number of sequences better than 10.0: 1
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 202
Length of query: 452
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 364
Effective length of database: 1,199,356
Effective search space: 436565584
Effective search space used: 436565584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.2 bits)