BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14769
(90 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna Through A Dimeric
BHLHZ DOMAIN
Length = 86
Score = 132 bits (331), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/78 (85%), Positives = 72/78 (92%), Gaps = 1/78 (1%)
Query: 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNAS 72
A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA +YIQ+MRRKN +
Sbjct: 1 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHT 59
Query: 73 HQQDIDDLKRQNAILEAQ 90
HQQDIDDLKRQNA+LE Q
Sbjct: 60 HQQDIDDLKRQNALLEQQ 77
>pdb|1NLW|B Chain B, Crystal Structure Of Mad-Max Recognizing Dna
pdb|1NLW|E Chain E, Crystal Structure Of Mad-Max Recognizing Dna
Length = 76
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/76 (86%), Positives = 70/76 (92%), Gaps = 1/76 (1%)
Query: 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQ 74
KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA +YIQ+MRRKN +HQ
Sbjct: 1 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQ 59
Query: 75 QDIDDLKRQNAILEAQ 90
QDIDDLKRQNA+LE Q
Sbjct: 60 QDIDDLKRQNALLEQQ 75
>pdb|1NKP|B Chain B, Crystal Structure Of Myc-Max Recognizing Dna
pdb|1NKP|E Chain E, Crystal Structure Of Myc-Max Recognizing Dna
Length = 83
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/77 (85%), Positives = 71/77 (92%), Gaps = 1/77 (1%)
Query: 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASH 73
+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA +YIQ+MRRKN +H
Sbjct: 1 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTH 59
Query: 74 QQDIDDLKRQNAILEAQ 90
QQDIDDLKRQNA+LE Q
Sbjct: 60 QQDIDDLKRQNALLEQQ 76
>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna
Complex: New Insights Into Mechanisms Of
Transcriptional Control
pdb|1HLO|B Chain B, The Crystal Structure Of An Intact Human Max-Dna
Complex: New Insights Into Mechanisms Of
Transcriptional Control
Length = 80
Score = 126 bits (316), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/79 (83%), Positives = 72/79 (91%), Gaps = 2/79 (2%)
Query: 7 DYDIES-AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQF 65
D ++ES A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA +YIQ+
Sbjct: 3 DIEVESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQY 61
Query: 66 MRRKNASHQQDIDDLKRQN 84
MRRKN +HQQDIDDLKRQN
Sbjct: 62 MRRKNHTHQQDIDDLKRQN 80
>pdb|1R05|A Chain A, Solution Structure Of Max B-Hlh-Lz
pdb|1R05|B Chain B, Solution Structure Of Max B-Hlh-Lz
Length = 87
Score = 125 bits (313), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 65/78 (83%), Positives = 70/78 (89%), Gaps = 1/78 (1%)
Query: 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNAS 72
A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA +YIQ+MRRK +
Sbjct: 2 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKVHT 60
Query: 73 HQQDIDDLKRQNAILEAQ 90
QQDIDDLKRQNA+LE Q
Sbjct: 61 LQQDIDDLKRQNALLEQQ 78
>pdb|1NKP|A Chain A, Crystal Structure Of Myc-Max Recognizing Dna
pdb|1NKP|D Chain D, Crystal Structure Of Myc-Max Recognizing Dna
Length = 88
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYI 63
KR HN LER+RR+ +K SF +LRD +P L+ + A + ILKKA YI
Sbjct: 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYI 54
>pdb|1A93|B Chain B, Nmr Solution Structure Of The C-Myc-Max Heterodimeric
Leucine Zipper, Nmr, Minimized Average Structure
pdb|2A93|B Chain B, Nmr Solution Structure Of The C-Myc-Max Heterodimeric
Leucine Zipper, 40 Structures
Length = 34
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/25 (84%), Positives = 23/25 (92%)
Query: 66 MRRKNASHQQDIDDLKRQNAILEAQ 90
MRRKN +HQQDIDDLKRQNA+LE Q
Sbjct: 5 MRRKNDTHQQDIDDLKRQNALLEQQ 29
>pdb|1AN4|A Chain A, Structure And Function Of The BHLHZ DOMAIN OF USF
pdb|1AN4|B Chain B, Structure And Function Of The BHLHZ DOMAIN OF USF
Length = 65
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 14 EKRAHHNALERKRRDHIKDSFSSLRDSVP--SLQGEKVA-SRAQILKKAADYIQFMRRKN 70
++RA HN +ER+RRD I + L +P S++ K S+ IL KA+DYIQ +R+ N
Sbjct: 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63
>pdb|1AM9|A Chain A, Human Srebp-1a Bound To Ldl Receptor Promoter
pdb|1AM9|B Chain B, Human Srebp-1a Bound To Ldl Receptor Promoter
pdb|1AM9|C Chain C, Human Srebp-1a Bound To Ldl Receptor Promoter
pdb|1AM9|D Chain D, Human Srebp-1a Bound To Ldl Receptor Promoter
Length = 82
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNAS 72
EKR HNA+E++ R I D L+D V + + +++ +L+KA DYI+F++ N
Sbjct: 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAK--LNKSAVLRKAIDYIRFLQHSNQK 61
Query: 73 HQQD 76
+Q+
Sbjct: 62 LKQE 65
>pdb|3U5V|A Chain A, Crystal Structure Of Max-E47
Length = 76
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 12 SAEKRAHHNALERKRRDHIKDSFSSL-RDSVPSLQGEKVASRAQILKKAADYI 63
A+KRAHHNALERKRR I ++F L R L+ +K ++ IL++A I
Sbjct: 2 GADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVI 54
>pdb|4ATI|A Chain A, Mitf:m-Box Complex
pdb|4ATI|B Chain B, Mitf:m-Box Complex
pdb|4ATK|A Chain A, Mitf:e-Box Complex
pdb|4ATK|B Chain B, Mitf:e-Box Complex
Length = 118
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 14 EKRAHHNALERKRRDHIKDSFSSLRDSVP-SLQGEKVASRAQILKKAADYIQFMRRKNAS 72
+K+ +HN +ER+RR +I D L +P S + ++ ILK + DYI+ ++R+
Sbjct: 26 QKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQRE--- 82
Query: 73 HQQDIDDLKRQNAILE 88
QQ DL+ + LE
Sbjct: 83 -QQRAKDLENRQKKLE 97
>pdb|4AYA|A Chain A, Crystal Structure Of Id2 Hlh Homodimer At 2.1a
Resolution
pdb|4AYA|B Chain B, Crystal Structure Of Id2 Hlh Homodimer At 2.1a
Resolution
Length = 97
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 29 HIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYI 63
++ D +S L++ VPS+ K S+ +IL+ DYI
Sbjct: 39 NMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYI 73
>pdb|1NLW|A Chain A, Crystal Structure Of Mad-Max Recognizing Dna
pdb|1NLW|D Chain D, Crystal Structure Of Mad-Max Recognizing Dna
Length = 80
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 16 RAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMR--RKNASH 73
R+ HN +E+ RR H++ S L+ VP + +L KA +I+ + + A H
Sbjct: 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61
Query: 74 QQDIDDLKRQNAILEAQ 90
Q ID L+R+ L+ Q
Sbjct: 62 Q--IDQLQREQRHLKRQ 76
>pdb|4F3L|A Chain A, Crystal Structure Of The Heterodimeric Clock:bmal1
Transcriptional Activator Complex
Length = 361
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 9 DIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRR 68
D + KR N E+KRRD L +P + ++ +L+K+ D+++ +
Sbjct: 6 DDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPG--NARKMDKSTVLQKSIDFLR--KH 61
Query: 69 KNASHQQDIDDLKR 82
K + Q D ++++
Sbjct: 62 KETTAQSDASEIRQ 75
>pdb|2BMX|A Chain A, Mycobacterium Tuberculosis Ahpc
pdb|2BMX|B Chain B, Mycobacterium Tuberculosis Ahpc
pdb|2BMX|C Chain C, Mycobacterium Tuberculosis Ahpc
Length = 195
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 30/69 (43%)
Query: 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASH 73
+ RA HN L+ + D L + L + VA R + + IQF+ S
Sbjct: 95 QWRAQHNDLKTLPFPXLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVSATAGSV 154
Query: 74 QQDIDDLKR 82
+++D++ R
Sbjct: 155 GRNVDEVLR 163
>pdb|2LFH|A Chain A, Solution Nmr Structure Of The Helix-Loop-Helix Domain Of
Human Id3 Protein, Northeast Structural Genomics
Consortium Target Hr3111a
pdb|2LFH|B Chain B, Solution Nmr Structure Of The Helix-Loop-Helix Domain Of
Human Id3 Protein, Northeast Structural Genomics
Consortium Target Hr3111a
Length = 68
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 28 DHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYI 63
D + +S LR+ VP + S+ +IL++ DYI
Sbjct: 27 DDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYI 62
>pdb|1UKL|C Chain C, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|D Chain D, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|E Chain E, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|F Chain F, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 61
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 27 RDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQN 84
R I D L+D V + ++ +L+KA DYI+++++ N +Q+ LK N
Sbjct: 1 RSSINDKIIELKDLVXGTDAK--XHKSGVLRKAIDYIKYLQQVNHKLRQENXVLKLAN 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.127 0.336
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,316,454
Number of Sequences: 62578
Number of extensions: 67997
Number of successful extensions: 214
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 188
Number of HSP's gapped (non-prelim): 27
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 45 (21.9 bits)