Query psy14769
Match_columns 90
No_of_seqs 123 out of 1098
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 20:08:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00010 HLH: Helix-loop-helix 99.8 2.3E-18 5E-23 95.6 7.2 53 15-67 1-55 (55)
2 KOG1319|consensus 99.7 8.4E-17 1.8E-21 108.6 10.3 76 13-88 60-139 (229)
3 cd00083 HLH Helix-loop-helix d 99.7 6.1E-17 1.3E-21 90.7 7.2 57 14-70 3-59 (60)
4 KOG1318|consensus 99.7 1.2E-16 2.6E-21 118.3 10.0 86 4-89 222-318 (411)
5 smart00353 HLH helix loop heli 99.6 2.2E-15 4.7E-20 82.7 6.2 52 20-71 1-52 (53)
6 KOG2483|consensus 99.6 7.8E-15 1.7E-19 102.2 8.3 80 11-90 55-134 (232)
7 KOG0561|consensus 99.2 1.9E-11 4E-16 87.8 5.4 77 10-87 55-131 (373)
8 KOG3561|consensus 99.1 7.4E-11 1.6E-15 93.5 5.8 66 4-69 9-75 (803)
9 KOG4304|consensus 99.1 9.1E-11 2E-15 82.8 4.3 61 10-70 27-92 (250)
10 KOG3960|consensus 99.1 9.3E-10 2E-14 77.3 8.1 66 12-78 115-180 (284)
11 KOG4029|consensus 98.9 8.6E-10 1.9E-14 76.6 3.8 63 12-74 106-169 (228)
12 KOG2588|consensus 98.9 7.4E-10 1.6E-14 88.6 3.1 66 14-81 275-340 (953)
13 PLN03217 transcription factor 98.4 1.6E-06 3.5E-11 52.0 6.2 56 27-82 19-77 (93)
14 KOG4447|consensus 98.1 1.8E-06 3.8E-11 57.0 2.6 56 13-69 76-131 (173)
15 KOG3898|consensus 98.1 1.3E-06 2.9E-11 61.8 1.4 56 13-68 70-125 (254)
16 KOG3910|consensus 98.1 9.3E-06 2E-10 62.1 5.5 61 12-72 523-584 (632)
17 KOG4395|consensus 98.0 8.1E-06 1.8E-10 57.7 4.5 58 13-70 172-229 (285)
18 KOG3582|consensus 96.0 0.00094 2E-08 53.2 -1.4 75 14-88 650-726 (856)
19 KOG4447|consensus 93.8 0.14 3E-06 34.1 4.2 50 22-72 29-78 (173)
20 PF06005 DUF904: Protein of un 93.4 0.48 1E-05 27.5 5.6 32 56-87 13-44 (72)
21 COG3074 Uncharacterized protei 91.6 0.81 1.7E-05 26.7 4.9 30 56-85 13-42 (79)
22 smart00338 BRLZ basic region l 91.5 0.57 1.2E-05 26.2 4.2 27 61-87 26-52 (65)
23 PF00170 bZIP_1: bZIP transcri 90.3 1.2 2.5E-05 24.8 4.8 28 61-88 26-53 (64)
24 PRK15422 septal ring assembly 90.2 1.5 3.2E-05 26.0 5.2 31 56-86 13-43 (79)
25 KOG3560|consensus 90.0 0.35 7.5E-06 38.2 3.1 42 23-64 33-75 (712)
26 PF14775 NYD-SP28_assoc: Sperm 89.9 2.2 4.8E-05 23.8 6.5 52 34-89 3-54 (60)
27 PF07716 bZIP_2: Basic region 89.8 1.5 3.2E-05 23.7 4.8 30 60-89 24-53 (54)
28 PHA03386 P10 fibrous body prot 89.1 0.9 2E-05 27.7 3.9 40 50-89 1-40 (94)
29 KOG3558|consensus 88.4 0.86 1.9E-05 36.9 4.3 49 16-64 47-96 (768)
30 KOG3559|consensus 87.4 0.7 1.5E-05 35.5 3.2 44 22-65 8-52 (598)
31 KOG4343|consensus 84.4 1.6 3.4E-05 34.6 3.8 33 58-90 299-331 (655)
32 smart00340 HALZ homeobox assoc 83.7 4.6 0.0001 21.2 4.3 25 65-89 9-33 (44)
33 PRK14127 cell division protein 83.6 5.3 0.00012 25.0 5.4 37 54-90 30-66 (109)
34 TIGR02449 conserved hypothetic 79.8 4.8 0.0001 23.0 3.8 32 57-88 10-41 (65)
35 PF14916 CCDC92: Coiled-coil d 79.5 8.5 0.00018 21.6 4.7 37 52-88 4-41 (60)
36 PF04977 DivIC: Septum formati 78.3 8.8 0.00019 21.5 4.8 26 62-87 25-50 (80)
37 PF01166 TSC22: TSC-22/dip/bun 78.0 9 0.00019 21.5 4.4 24 65-88 18-41 (59)
38 PF14197 Cep57_CLD_2: Centroso 77.5 11 0.00024 21.6 5.3 30 53-89 39-68 (69)
39 TIGR02894 DNA_bind_RsfA transc 77.2 9.6 0.00021 25.5 5.2 16 53-68 79-94 (161)
40 PF10883 DUF2681: Protein of u 76.4 14 0.00031 22.2 5.6 27 63-89 25-51 (87)
41 PF07334 IFP_35_N: Interferon- 74.9 9.4 0.0002 22.5 4.2 26 63-88 2-27 (76)
42 smart00338 BRLZ basic region l 74.4 12 0.00027 20.6 6.0 31 60-90 32-62 (65)
43 PF06156 DUF972: Protein of un 73.7 17 0.00037 22.5 5.5 25 63-87 24-48 (107)
44 PF04977 DivIC: Septum formati 73.5 9.6 0.00021 21.4 4.1 28 62-89 18-45 (80)
45 PF07407 Seadorna_VP6: Seadorn 73.1 6.7 0.00015 29.4 4.0 32 58-89 29-60 (420)
46 PF15619 Lebercilin: Ciliary p 72.5 16 0.00034 25.0 5.5 36 54-89 5-40 (194)
47 PRK00888 ftsB cell division pr 72.5 12 0.00026 23.0 4.5 26 63-88 36-61 (105)
48 PF09789 DUF2353: Uncharacteri 72.2 35 0.00076 25.3 7.5 40 50-89 68-107 (319)
49 PRK13169 DNA replication intia 71.8 21 0.00045 22.4 5.5 24 63-86 31-54 (110)
50 PF04102 SlyX: SlyX; InterPro 71.7 16 0.00035 20.7 4.9 27 63-89 20-46 (69)
51 COG3074 Uncharacterized protei 71.7 17 0.00038 21.1 5.1 40 50-89 17-60 (79)
52 PRK10884 SH3 domain-containing 71.6 13 0.00029 25.6 5.1 37 53-89 124-160 (206)
53 PRK00888 ftsB cell division pr 70.9 9.9 0.00022 23.4 3.9 27 63-89 29-55 (105)
54 PF12709 Kinetocho_Slk19: Cent 70.5 14 0.0003 22.3 4.3 56 30-85 13-73 (87)
55 KOG3584|consensus 70.2 6.3 0.00014 29.0 3.3 29 60-88 311-339 (348)
56 PF01920 Prefoldin_2: Prefoldi 69.9 3.8 8.3E-05 24.4 1.9 60 29-88 30-96 (106)
57 PF05103 DivIVA: DivIVA protei 69.9 7.3 0.00016 24.1 3.2 29 60-88 24-52 (131)
58 PF03980 Nnf1: Nnf1 ; InterPr 68.6 24 0.00051 21.4 5.8 39 52-90 71-109 (109)
59 PF07106 TBPIP: Tat binding pr 68.6 20 0.00043 23.5 5.2 71 18-89 7-107 (169)
60 KOG3119|consensus 66.0 46 0.001 23.8 8.8 32 57-88 218-249 (269)
61 PF06005 DUF904: Protein of un 64.9 25 0.00054 20.3 5.0 26 63-88 27-52 (72)
62 PF10224 DUF2205: Predicted co 63.9 28 0.00061 20.6 4.8 15 62-76 24-38 (80)
63 PRK11239 hypothetical protein; 63.2 16 0.00035 25.6 4.1 28 63-90 185-212 (215)
64 PF04380 BMFP: Membrane fusoge 62.9 19 0.00042 21.0 3.9 25 66-90 55-79 (79)
65 TIGR03752 conj_TIGR03752 integ 62.3 27 0.00058 27.3 5.5 37 53-89 58-94 (472)
66 KOG4005|consensus 62.3 20 0.00044 25.7 4.5 28 60-87 95-123 (292)
67 PF05781 MRVI1: MRVI1 protein; 62.3 75 0.0016 25.3 7.9 29 17-45 220-248 (538)
68 PF06305 DUF1049: Protein of u 62.2 15 0.00032 20.2 3.2 25 64-88 44-68 (68)
69 KOG4571|consensus 62.0 25 0.00054 25.8 5.0 30 60-89 254-283 (294)
70 PRK13922 rod shape-determining 61.7 40 0.00087 23.7 6.0 27 60-86 68-94 (276)
71 PRK09413 IS2 repressor TnpA; R 61.2 23 0.00051 21.9 4.3 25 60-84 77-101 (121)
72 TIGR02449 conserved hypothetic 60.8 29 0.00063 19.7 5.2 26 64-89 3-28 (65)
73 KOG3582|consensus 60.7 1.8 3.9E-05 35.2 -1.1 65 13-80 785-851 (856)
74 PF08946 Osmo_CC: Osmosensory 60.6 19 0.00042 19.1 3.2 32 54-88 8-39 (46)
75 PF10883 DUF2681: Protein of u 60.5 35 0.00076 20.5 5.6 32 58-89 13-44 (87)
76 PRK14127 cell division protein 60.4 25 0.00054 22.0 4.2 28 61-88 30-57 (109)
77 PF00170 bZIP_1: bZIP transcri 59.9 27 0.00059 19.1 5.8 27 63-89 35-61 (64)
78 PF07412 Geminin: Geminin; In 59.6 24 0.00051 24.5 4.4 35 54-88 118-152 (200)
79 PF05164 ZapA: Cell division p 59.4 32 0.00069 19.7 7.4 57 28-89 28-86 (89)
80 PF14662 CCDC155: Coiled-coil 59.2 27 0.00058 24.1 4.5 64 26-90 124-187 (193)
81 PRK00295 hypothetical protein; 59.1 31 0.00068 19.5 4.2 25 63-87 21-45 (68)
82 PF02183 HALZ: Homeobox associ 59.0 25 0.00054 18.4 3.9 24 65-88 16-39 (45)
83 PF14197 Cep57_CLD_2: Centroso 58.7 24 0.00053 20.1 3.7 17 73-89 45-61 (69)
84 PF11853 DUF3373: Protein of u 58.2 18 0.00038 28.4 3.9 18 63-80 33-50 (489)
85 PRK04406 hypothetical protein; 57.0 35 0.00076 19.8 4.2 25 63-87 27-51 (75)
86 PRK02119 hypothetical protein; 56.1 37 0.00081 19.5 4.2 25 63-87 25-49 (73)
87 PF06632 XRCC4: DNA double-str 54.7 44 0.00096 24.9 5.4 37 54-90 130-166 (342)
88 cd07429 Cby_like Chibby, a nuc 53.4 40 0.00086 21.1 4.3 28 60-87 71-98 (108)
89 PRK02793 phi X174 lysis protei 53.1 42 0.00091 19.2 4.2 25 63-87 24-48 (72)
90 PRK00736 hypothetical protein; 53.1 41 0.00088 19.0 4.2 25 63-87 21-45 (68)
91 PF08826 DMPK_coil: DMPK coile 52.8 40 0.00087 18.9 4.5 27 63-89 34-60 (61)
92 PRK05771 V-type ATP synthase s 52.1 1.2E+02 0.0026 24.2 8.7 63 25-87 50-126 (646)
93 KOG0709|consensus 51.7 17 0.00038 28.2 2.9 23 50-72 261-283 (472)
94 PF04839 PSRP-3_Ycf65: Plastid 51.3 12 0.00027 20.1 1.5 37 32-68 11-47 (49)
95 PF12329 TMF_DNA_bd: TATA elem 50.9 47 0.001 19.1 4.3 24 63-86 35-58 (74)
96 PF10393 Matrilin_ccoil: Trime 50.5 39 0.00084 18.0 4.8 31 53-83 15-45 (47)
97 PF06156 DUF972: Protein of un 50.4 59 0.0013 20.1 6.1 28 61-88 29-56 (107)
98 PRK15422 septal ring assembly 49.7 46 0.001 19.7 3.9 37 50-89 17-60 (79)
99 KOG4196|consensus 49.6 61 0.0013 21.1 4.8 16 21-36 51-66 (135)
100 PF14193 DUF4315: Domain of un 49.4 44 0.00095 19.9 3.9 21 57-77 11-31 (83)
101 KOG0709|consensus 49.4 67 0.0014 25.1 5.7 52 21-89 263-314 (472)
102 TIGR01834 PHA_synth_III_E poly 49.3 38 0.00082 25.1 4.3 25 65-89 293-317 (320)
103 PF04880 NUDE_C: NUDE protein, 49.2 31 0.00067 23.2 3.5 33 52-84 15-47 (166)
104 PF10454 DUF2458: Protein of u 48.6 42 0.00092 22.0 4.1 39 51-89 3-41 (150)
105 PF02344 Myc-LZ: Myc leucine z 48.5 34 0.00073 16.8 4.1 23 66-88 6-28 (32)
106 PHA01750 hypothetical protein 48.5 52 0.0011 18.9 4.5 6 57-62 33-38 (75)
107 smart00787 Spc7 Spc7 kinetocho 48.1 1.1E+02 0.0023 22.5 7.6 57 25-85 179-235 (312)
108 PF07047 OPA3: Optic atrophy 3 48.0 47 0.001 21.2 4.2 21 69-89 113-133 (134)
109 TIGR02209 ftsL_broad cell divi 47.5 53 0.0011 18.7 5.6 25 63-87 33-57 (85)
110 PRK10265 chaperone-modulator p 47.1 63 0.0014 19.5 5.0 29 59-87 69-97 (101)
111 PRK04325 hypothetical protein; 46.9 56 0.0012 18.8 4.2 25 63-87 25-49 (74)
112 PRK13922 rod shape-determining 46.6 78 0.0017 22.2 5.5 38 52-89 67-107 (276)
113 PF10465 Inhibitor_I24: PinA p 45.9 23 0.0005 22.8 2.4 19 52-70 121-139 (140)
114 PF08657 DASH_Spc34: DASH comp 45.6 1.1E+02 0.0024 21.9 6.8 30 58-87 177-206 (259)
115 PF13600 DUF4140: N-terminal d 45.4 51 0.0011 19.6 3.9 33 55-87 71-103 (104)
116 COG1256 FlgK Flagellar hook-as 45.1 1.5E+02 0.0033 23.6 7.3 44 24-69 107-150 (552)
117 PF04728 LPP: Lipoprotein leuc 44.9 54 0.0012 18.1 4.4 23 63-85 12-34 (56)
118 PF04880 NUDE_C: NUDE protein, 44.5 25 0.00053 23.7 2.5 28 56-87 9-36 (166)
119 PF11336 DUF3138: Protein of u 44.0 44 0.00096 26.1 4.0 26 60-85 24-49 (514)
120 PF08172 CASP_C: CASP C termin 43.8 54 0.0012 23.3 4.3 28 62-89 94-121 (248)
121 PRK13169 DNA replication intia 43.7 80 0.0017 19.7 6.1 33 57-89 18-50 (110)
122 PF04065 Not3: Not1 N-terminal 42.3 90 0.0019 22.1 5.2 28 61-88 122-149 (233)
123 PF12325 TMF_TATA_bd: TATA ele 42.0 76 0.0017 20.1 4.4 11 63-73 25-35 (120)
124 PF12711 Kinesin-relat_1: Kine 41.4 46 0.001 20.0 3.1 14 75-88 51-64 (86)
125 COG1382 GimC Prefoldin, chaper 41.1 94 0.002 19.8 6.1 60 30-89 39-105 (119)
126 COG5509 Uncharacterized small 41.0 42 0.00091 18.9 2.7 36 50-85 12-49 (65)
127 KOG4797|consensus 40.9 93 0.002 19.7 6.1 28 61-88 67-94 (123)
128 COG2433 Uncharacterized conser 40.4 49 0.0011 26.8 3.9 27 62-88 430-456 (652)
129 PF07544 Med9: RNA polymerase 40.3 60 0.0013 19.0 3.5 17 29-45 32-48 (83)
130 PF05377 FlaC_arch: Flagella a 40.2 66 0.0014 17.7 4.1 22 63-84 16-37 (55)
131 PF11285 DUF3086: Protein of u 40.2 69 0.0015 23.3 4.3 28 62-89 5-32 (283)
132 PF05565 Sipho_Gp157: Siphovir 39.2 1E+02 0.0022 20.2 4.9 31 58-88 44-74 (162)
133 PF11690 DUF3287: Protein of u 38.9 99 0.0021 19.4 5.2 31 57-87 38-68 (109)
134 PF05687 DUF822: Plant protein 38.9 58 0.0013 21.6 3.5 27 14-40 10-36 (150)
135 PF07989 Microtub_assoc: Micro 38.8 79 0.0017 18.3 3.9 22 66-87 48-69 (75)
136 KOG2607|consensus 38.2 57 0.0012 25.4 3.8 39 51-89 111-150 (505)
137 PRK13729 conjugal transfer pil 38.0 1.1E+02 0.0023 24.1 5.4 22 17-38 67-89 (475)
138 PF13094 CENP-Q: CENP-Q, a CEN 38.0 94 0.002 20.1 4.5 31 53-83 54-84 (160)
139 PF02186 TFIIE_beta: TFIIE bet 37.9 31 0.00066 19.5 1.9 15 52-66 3-17 (65)
140 PRK10803 tol-pal system protei 37.8 1.2E+02 0.0026 21.5 5.3 25 63-87 63-87 (263)
141 PRK02724 hypothetical protein; 37.6 53 0.0011 20.4 3.0 39 31-69 44-82 (104)
142 PF14992 TMCO5: TMCO5 family 37.5 1.6E+02 0.0035 21.5 5.9 26 54-79 144-169 (280)
143 PF07061 Swi5: Swi5; InterPro 37.3 89 0.0019 18.4 4.0 25 64-88 3-27 (83)
144 PF15397 DUF4618: Domain of un 36.5 93 0.002 22.4 4.5 27 63-89 195-221 (258)
145 PF10046 BLOC1_2: Biogenesis o 36.2 98 0.0021 18.6 5.9 6 69-74 74-79 (99)
146 PF06698 DUF1192: Protein of u 36.2 80 0.0017 17.6 4.0 21 64-84 24-44 (59)
147 PF11853 DUF3373: Protein of u 35.7 45 0.00099 26.2 3.1 18 69-86 32-49 (489)
148 CHL00163 ycf65 putative riboso 35.5 60 0.0013 20.1 3.0 38 32-69 40-77 (99)
149 PF13591 MerR_2: MerR HTH fami 35.3 70 0.0015 18.6 3.3 14 75-88 70-83 (84)
150 KOG1962|consensus 35.2 1E+02 0.0023 21.6 4.5 35 55-89 173-207 (216)
151 PF14645 Chibby: Chibby family 35.0 1E+02 0.0022 19.3 4.1 26 62-87 72-97 (116)
152 PF12097 DUF3573: Protein of u 35.0 60 0.0013 24.5 3.5 22 68-89 42-63 (383)
153 PF15370 DUF4598: Domain of un 34.7 89 0.0019 19.5 3.8 25 55-79 2-26 (112)
154 PRK00846 hypothetical protein; 34.6 99 0.0021 18.1 4.2 25 63-87 29-53 (77)
155 PRK11530 hypothetical protein; 34.5 93 0.002 21.3 4.1 28 63-90 26-53 (183)
156 PF05529 Bap31: B-cell recepto 34.0 1E+02 0.0022 20.5 4.2 28 61-88 161-188 (192)
157 TIGR02894 DNA_bind_RsfA transc 33.8 1.3E+02 0.0028 20.2 4.6 23 65-87 108-130 (161)
158 cd04766 HTH_HspR Helix-Turn-He 33.3 1E+02 0.0022 17.9 4.4 16 73-88 70-85 (91)
159 PF04799 Fzo_mitofusin: fzo-li 33.1 55 0.0012 22.1 2.8 10 34-43 85-94 (171)
160 cd07977 TFIIE_beta_winged_heli 32.8 42 0.00092 19.4 2.0 18 50-67 5-22 (75)
161 KOG2991|consensus 32.5 1.3E+02 0.0028 22.0 4.7 59 22-88 247-305 (330)
162 PF03955 Adeno_PIX: Adenovirus 32.4 1.3E+02 0.0027 18.9 4.1 23 65-87 87-109 (109)
163 PHA01754 hypothetical protein 32.3 1E+02 0.0022 17.5 3.9 39 30-69 18-56 (69)
164 KOG3119|consensus 32.0 75 0.0016 22.7 3.5 13 69-81 237-249 (269)
165 PF05546 She9_MDM33: She9 / Md 32.0 1.4E+02 0.0031 20.8 4.8 26 63-88 34-59 (207)
166 PF05308 Mito_fiss_reg: Mitoch 31.9 95 0.0021 22.2 4.0 27 55-81 116-142 (253)
167 PF03195 DUF260: Protein of un 31.7 69 0.0015 19.6 2.9 25 59-83 76-100 (101)
168 PLN03188 kinesin-12 family pro 31.6 1.5E+02 0.0033 26.2 5.6 57 23-90 1128-1188(1320)
169 TIGR02473 flagell_FliJ flagell 31.5 1.3E+02 0.0028 18.5 6.0 36 53-88 60-95 (141)
170 PF08172 CASP_C: CASP C termin 31.4 1.9E+02 0.0042 20.5 5.7 39 51-89 76-114 (248)
171 PRK13729 conjugal transfer pil 31.4 2.6E+02 0.0056 22.0 6.5 20 70-89 99-118 (475)
172 cd00632 Prefoldin_beta Prefold 31.2 1.2E+02 0.0026 18.1 7.6 58 31-88 33-97 (105)
173 TIGR00293 prefoldin, archaeal 31.2 1.1E+02 0.0024 18.7 3.9 33 55-87 83-119 (126)
174 TIGR00219 mreC rod shape-deter 31.1 2E+02 0.0044 20.6 6.0 25 56-80 58-85 (283)
175 PF04999 FtsL: Cell division p 31.0 1.2E+02 0.0025 17.8 5.2 25 63-87 44-68 (97)
176 COG3120 Uncharacterized protei 30.9 1.5E+02 0.0034 19.2 5.1 35 53-87 112-146 (149)
177 PF12240 Angiomotin_C: Angiomo 30.9 1.9E+02 0.0041 20.2 6.0 40 51-90 3-43 (205)
178 TIGR01147 V_ATP_synt_G vacuola 30.8 1.4E+02 0.003 18.7 5.4 34 52-85 18-52 (113)
179 COG2919 Septum formation initi 30.4 1.4E+02 0.003 18.5 5.3 25 64-88 60-84 (117)
180 PF05597 Phasin: Poly(hydroxya 30.4 1E+02 0.0023 19.8 3.7 23 67-89 108-130 (132)
181 PF08317 Spc7: Spc7 kinetochor 30.2 2.2E+02 0.0047 20.7 7.9 20 25-44 184-203 (325)
182 PF11279 DUF3080: Protein of u 30.0 2.2E+02 0.0048 20.8 7.7 60 28-88 206-267 (316)
183 PF05529 Bap31: B-cell recepto 29.9 85 0.0018 20.9 3.4 26 65-90 158-183 (192)
184 PRK03947 prefoldin subunit alp 29.9 1.5E+02 0.0032 18.6 5.3 9 56-64 92-100 (140)
185 PF10280 Med11: Mediator compl 29.7 1.4E+02 0.0031 18.5 7.1 52 30-82 22-73 (117)
186 PF11382 DUF3186: Protein of u 29.7 82 0.0018 22.9 3.5 26 61-86 39-64 (308)
187 PF14389 Lzipper-MIP1: Leucine 29.5 1.3E+02 0.0028 17.8 5.4 23 21-43 25-47 (88)
188 PRK14872 rod shape-determining 29.4 1.3E+02 0.0028 22.5 4.5 28 61-88 57-84 (337)
189 PF08702 Fib_alpha: Fibrinogen 28.9 1.7E+02 0.0036 19.0 4.6 29 61-89 104-132 (146)
190 PF04111 APG6: Autophagy prote 28.5 1.7E+02 0.0036 21.4 4.9 21 63-83 52-72 (314)
191 PF11932 DUF3450: Protein of u 28.4 2.1E+02 0.0045 19.9 5.5 26 62-87 71-96 (251)
192 TIGR02338 gimC_beta prefoldin, 28.3 1.4E+02 0.0031 18.1 7.2 59 31-89 37-102 (110)
193 PF09006 Surfac_D-trimer: Lung 28.1 1E+02 0.0022 16.3 4.4 18 65-82 3-20 (46)
194 COG4467 Regulator of replicati 28.0 1.6E+02 0.0035 18.5 5.1 27 62-88 23-49 (114)
195 PF08286 Spc24: Spc24 subunit 28.0 20 0.00043 22.3 0.0 29 61-89 13-41 (118)
196 PHA03162 hypothetical protein; 27.8 76 0.0017 20.6 2.7 21 64-84 16-36 (135)
197 PHA03155 hypothetical protein; 27.8 79 0.0017 20.0 2.7 21 64-84 11-31 (115)
198 PF12718 Tropomyosin_1: Tropom 27.6 1.7E+02 0.0038 18.8 4.9 21 63-83 37-57 (143)
199 PRK09343 prefoldin subunit bet 27.5 1.6E+02 0.0035 18.3 6.3 58 31-88 41-105 (121)
200 PF12999 PRKCSH-like: Glucosid 27.5 2E+02 0.0044 19.5 5.5 29 61-89 146-174 (176)
201 PF08232 Striatin: Striatin fa 27.3 1.7E+02 0.0036 18.7 4.2 10 62-71 54-63 (134)
202 PRK10803 tol-pal system protei 27.3 1.3E+02 0.0029 21.3 4.1 26 63-88 56-81 (263)
203 PF06785 UPF0242: Uncharacteri 27.1 1.5E+02 0.0032 22.6 4.4 35 54-88 120-154 (401)
204 COG3132 Uncharacterized protei 27.0 1.3E+02 0.0029 20.8 3.8 23 66-88 190-212 (215)
205 COG3416 Uncharacterized protei 26.9 2E+02 0.0043 20.3 4.7 24 66-89 53-76 (233)
206 COG3937 Uncharacterized conser 26.8 90 0.0019 19.6 2.8 18 71-88 86-103 (108)
207 TIGR01837 PHA_granule_1 poly(h 26.5 1.3E+02 0.0028 18.8 3.5 21 68-88 96-116 (118)
208 PRK10884 SH3 domain-containing 26.4 2.2E+02 0.0048 19.6 5.4 19 67-85 145-163 (206)
209 cd00584 Prefoldin_alpha Prefol 26.2 1.5E+02 0.0033 18.2 3.9 24 64-87 97-120 (129)
210 PF07996 T4SS: Type IV secreti 26.2 1.3E+02 0.0028 19.8 3.8 32 56-87 14-45 (195)
211 PRK05771 V-type ATP synthase s 26.1 2E+02 0.0044 22.9 5.3 28 62-89 94-121 (646)
212 PF10226 DUF2216: Uncharacteri 25.9 1.8E+02 0.0038 20.2 4.3 27 56-82 50-76 (195)
213 PF08537 NBP1: Fungal Nap bind 25.9 1.7E+02 0.0037 21.8 4.5 28 61-88 175-202 (323)
214 PF07139 DUF1387: Protein of u 25.8 1.8E+02 0.0038 21.5 4.5 15 28-42 185-199 (302)
215 PF15290 Syntaphilin: Golgi-lo 25.6 2E+02 0.0044 21.2 4.8 33 56-88 63-95 (305)
216 PF07926 TPR_MLP1_2: TPR/MLP1/ 25.5 1.4E+02 0.0031 18.7 3.7 21 67-87 104-124 (132)
217 PF13713 BRX_N: Transcription 25.5 1.1E+02 0.0023 15.6 2.7 20 58-77 9-28 (39)
218 KOG0837|consensus 25.5 98 0.0021 22.5 3.1 10 26-35 214-223 (279)
219 PF09849 DUF2076: Uncharacteri 25.4 2.6E+02 0.0055 20.0 8.2 57 27-86 6-73 (247)
220 PF05531 NPV_P10: Nucleopolyhe 25.2 1.5E+02 0.0033 17.3 4.9 27 54-80 4-30 (75)
221 PF03285 Paralemmin: Paralemmi 25.2 1.2E+02 0.0025 22.2 3.5 23 67-89 9-31 (278)
222 PHA02557 22 prohead core prote 25.0 2.1E+02 0.0046 20.8 4.7 31 59-89 139-169 (271)
223 COG2433 Uncharacterized conser 25.0 2.8E+02 0.0061 22.7 5.8 25 63-87 424-448 (652)
224 PF13815 Dzip-like_N: Iguana/D 24.9 1.8E+02 0.0038 17.9 5.9 35 53-87 61-99 (118)
225 PRK09039 hypothetical protein; 24.8 2.6E+02 0.0055 20.7 5.4 23 63-85 139-161 (343)
226 smart00502 BBC B-Box C-termina 24.7 1.6E+02 0.0034 17.3 5.1 15 27-41 41-55 (127)
227 PF09311 Rab5-bind: Rabaptin-l 24.7 61 0.0013 21.7 1.9 36 53-88 7-42 (181)
228 PRK05689 fliJ flagellar biosyn 24.6 1.9E+02 0.0041 18.2 6.0 36 53-88 63-98 (147)
229 PF04012 PspA_IM30: PspA/IM30 24.3 2.3E+02 0.005 19.1 5.3 25 63-87 114-138 (221)
230 PRK00977 exodeoxyribonuclease 24.3 1.6E+02 0.0034 17.2 4.7 52 31-82 13-66 (80)
231 PF04849 HAP1_N: HAP1 N-termin 24.1 1.8E+02 0.0038 21.6 4.3 28 61-88 160-187 (306)
232 PF11855 DUF3375: Protein of u 24.1 2.1E+02 0.0045 22.2 4.9 19 70-88 146-164 (478)
233 PF12443 AKNA: AT-hook-contain 24.0 1.9E+02 0.0041 18.1 3.9 10 15-24 10-19 (106)
234 PF15459 RRP14: 60S ribosome b 23.9 57 0.0012 18.3 1.4 14 31-44 8-21 (64)
235 KOG4674|consensus 23.9 2.9E+02 0.0063 25.5 6.1 58 29-89 1124-1181(1822)
236 PF07888 CALCOCO1: Calcium bin 23.7 2.8E+02 0.0061 22.2 5.6 38 50-87 135-176 (546)
237 PF04568 IATP: Mitochondrial A 23.7 1.9E+02 0.004 17.8 5.5 28 61-88 64-96 (100)
238 PRK05097 Ter macrodomain organ 23.7 2.3E+02 0.0049 18.7 5.1 35 53-87 112-146 (150)
239 PRK13923 putative spore coat p 23.4 2.4E+02 0.0051 19.1 4.5 27 61-87 111-137 (170)
240 PF04111 APG6: Autophagy prote 23.4 2.4E+02 0.0051 20.6 4.9 27 61-87 64-90 (314)
241 PF10211 Ax_dynein_light: Axon 23.0 2.5E+02 0.0054 18.9 6.7 17 26-42 60-76 (189)
242 PF09278 MerR-DNA-bind: MerR, 22.8 1.4E+02 0.0029 15.9 4.2 41 33-74 16-56 (65)
243 PF11471 Sugarporin_N: Maltopo 22.8 1.5E+02 0.0033 16.4 3.4 24 63-86 34-57 (60)
244 TIGR01280 xseB exodeoxyribonuc 22.6 1.6E+02 0.0034 16.5 4.7 51 32-82 5-57 (67)
245 PF01486 K-box: K-box region; 22.5 1.8E+02 0.0039 17.2 3.6 19 65-83 79-97 (100)
246 PRK15396 murein lipoprotein; P 22.5 1.8E+02 0.0038 17.1 4.3 22 65-86 29-50 (78)
247 PF05812 Herpes_BLRF2: Herpesv 22.5 2.2E+02 0.0047 18.1 4.1 21 64-84 6-26 (118)
248 KOG3436|consensus 22.5 1.4E+02 0.0031 19.1 3.1 21 69-89 13-33 (123)
249 KOG0869|consensus 22.4 2.6E+02 0.0055 18.9 4.5 56 17-72 22-77 (168)
250 PRK14011 prefoldin subunit alp 22.3 2.3E+02 0.005 18.4 5.5 13 28-40 34-46 (144)
251 PF01920 Prefoldin_2: Prefoldi 22.2 1.8E+02 0.0038 16.9 6.2 41 49-89 50-90 (106)
252 PF11336 DUF3138: Protein of u 22.1 1.1E+02 0.0024 24.0 3.1 18 60-77 31-48 (514)
253 KOG4571|consensus 22.1 2E+02 0.0044 21.1 4.2 31 59-89 239-269 (294)
254 PF09730 BicD: Microtubule-ass 22.0 2.3E+02 0.005 23.5 5.0 37 54-90 107-143 (717)
255 KOG4005|consensus 21.9 2.1E+02 0.0047 20.7 4.2 21 69-89 126-146 (292)
256 PF14802 TMEM192: TMEM192 fami 21.9 2.2E+02 0.0047 20.1 4.3 31 50-80 205-235 (236)
257 PF15058 Speriolin_N: Sperioli 21.8 2.3E+02 0.0049 19.7 4.2 26 62-88 13-38 (200)
258 PF14282 FlxA: FlxA-like prote 21.7 1.6E+02 0.0034 17.9 3.2 21 63-83 53-73 (106)
259 PRK14069 exodeoxyribonuclease 21.7 2E+02 0.0044 17.5 4.7 52 31-82 11-64 (95)
260 PF08317 Spc7: Spc7 kinetochor 21.5 2E+02 0.0044 20.9 4.2 11 33-43 171-181 (325)
261 KOG2264|consensus 21.4 2E+02 0.0044 23.6 4.4 23 67-89 127-149 (907)
262 COG5570 Uncharacterized small 21.3 1.6E+02 0.0035 16.2 3.3 20 63-82 35-54 (57)
263 KOG3335|consensus 21.2 2.8E+02 0.0061 18.9 5.2 27 61-87 106-132 (181)
264 COG1729 Uncharacterized protei 21.2 1.2E+02 0.0026 21.8 2.9 19 63-81 58-76 (262)
265 PF11544 Spc42p: Spindle pole 21.1 1.9E+02 0.0042 17.0 4.6 19 64-82 8-26 (76)
266 PF04508 Pox_A_type_inc: Viral 20.8 1.1E+02 0.0023 13.9 2.6 16 71-86 4-19 (23)
267 COG3599 DivIVA Cell division i 20.8 3E+02 0.0066 19.1 5.3 35 53-87 29-63 (212)
268 PF13863 DUF4200: Domain of un 20.3 2.2E+02 0.0047 17.3 4.3 16 29-44 43-58 (126)
269 cd09235 V_Alix Middle V-domain 20.0 3.6E+02 0.0078 19.7 5.7 49 30-82 164-212 (339)
No 1
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.77 E-value=2.3e-18 Score=95.61 Aligned_cols=53 Identities=45% Similarity=0.747 Sum_probs=48.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhcCCCC--CCcccccHHHHHHHHHHHHHHHH
Q psy14769 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSL--QGEKVASRAQILKKAADYIQFMR 67 (90)
Q Consensus 15 ~R~~hn~~Er~RR~~i~~~~~~L~~llP~~--~~~~k~sK~~iL~~ai~yIk~L~ 67 (90)
+|..||..|++||..||.+|+.|+.+||.+ ....+++|++||..||+||++||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 589999999999999999999999999997 24456999999999999999996
No 2
>KOG1319|consensus
Probab=99.72 E-value=8.4e-17 Score=108.56 Aligned_cols=76 Identities=33% Similarity=0.597 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCC----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQG----EKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 13 ~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~----~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
..+|.+|...|++||+.||.+|+.|+.|||.|.. +.|++|+.||+++|+||.+|..+....+.++..|++++..|+
T Consensus 60 ~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~ 139 (229)
T KOG1319|consen 60 DRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALK 139 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3469999999999999999999999999999863 337999999999999999999999999999999999999886
No 3
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.71 E-value=6.1e-17 Score=90.66 Aligned_cols=57 Identities=42% Similarity=0.679 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHH
Q psy14769 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKN 70 (90)
Q Consensus 14 ~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~ 70 (90)
.+|..|+..|+.||..||.+|+.|+.+||......+++|+.||..|++||+.|+..+
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999975567999999999999999999764
No 4
>KOG1318|consensus
Probab=99.70 E-value=1.2e-16 Score=118.28 Aligned_cols=86 Identities=23% Similarity=0.388 Sum_probs=69.2
Q ss_pred CcCCcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCC-cccccHHHHHHHHHHHHHHHHHHHHH----------
Q psy14769 4 DERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQG-EKVASRAQILKKAADYIQFMRRKNAS---------- 72 (90)
Q Consensus 4 ~~~~~~~~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~-~~k~sK~~iL~~ai~yIk~L~~~~~~---------- 72 (90)
.+..++..+..||.+||.+|||||++||++|.+|+.+||.+.. .-++.|+.||..+++||+.|++..++
T Consensus 222 ~~~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~ 301 (411)
T KOG1318|consen 222 TDATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKK 301 (411)
T ss_pred cccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3444555668899999999999999999999999999999853 23688999999999999999998774
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy14769 73 HQQDIDDLKRQNAILEA 89 (90)
Q Consensus 73 l~~~~~~L~~~~~~L~~ 89 (90)
|+..+..|..+++.|+.
T Consensus 302 le~~n~~L~~rieeLk~ 318 (411)
T KOG1318|consen 302 LESTNQELALRIEELKS 318 (411)
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 33455566666666654
No 5
>smart00353 HLH helix loop helix domain.
Probab=99.61 E-value=2.2e-15 Score=82.69 Aligned_cols=52 Identities=38% Similarity=0.638 Sum_probs=47.1
Q ss_pred HHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHH
Q psy14769 20 NALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNA 71 (90)
Q Consensus 20 n~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~ 71 (90)
|..||+||..||.+|..|+.+||.+.+..+++|+.||..|++||++|+..+.
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999998655679999999999999999998764
No 6
>KOG2483|consensus
Probab=99.58 E-value=7.8e-15 Score=102.18 Aligned_cols=80 Identities=54% Similarity=0.796 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14769 11 ESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90 (90)
Q Consensus 11 ~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~q 90 (90)
.....|..||+.|++||++|++||..|+..||..++.++-.-+.||.+|++||+.|+....+..+.++.|..++..|++|
T Consensus 55 ~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~r 134 (232)
T KOG2483|consen 55 SAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLSRENRKLKAR 134 (232)
T ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678999999999999999999999999999998877444799999999999999999999999999999999888764
No 7
>KOG0561|consensus
Probab=99.22 E-value=1.9e-11 Score=87.83 Aligned_cols=77 Identities=34% Similarity=0.447 Sum_probs=66.0
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 10 IESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 10 ~~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
.+..-+|...|..||+|...||.+|..|+.+||...+.+ +||+.||+.+.+||..|....-++-.+..+|++.+.++
T Consensus 55 ~erRmRReIANsNERRRMQSINAGFqsLr~LlPr~eGEK-LSKAAILQQTa~yI~~Le~~Kt~ll~qn~elKr~~~E~ 131 (373)
T KOG0561|consen 55 PERRMRREIANSNERRRMQSINAGFQSLRALLPRKEGEK-LSKAAILQQTADYIHQLEGHKTELLPQNGELKRLKLEE 131 (373)
T ss_pred HHHHHHHHhhcchHHHHHHhhhHHHHHHHHhcCcccchh-hHHHHHHHHHHHHHHHHHhcccccccccchHHHHHhhh
Confidence 344457778899999999999999999999999987655 99999999999999999998888877777777766554
No 8
>KOG3561|consensus
Probab=99.14 E-value=7.4e-11 Score=93.50 Aligned_cols=66 Identities=21% Similarity=0.500 Sum_probs=57.2
Q ss_pred CcCCcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCC-cccccHHHHHHHHHHHHHHHHHH
Q psy14769 4 DERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQG-EKVASRAQILKKAADYIQFMRRK 69 (90)
Q Consensus 4 ~~~~~~~~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~-~~k~sK~~iL~~ai~yIk~L~~~ 69 (90)
|+.+++..+...|.+||.+||+||+.+|..|++|..+||.+.. ..|++|.+||.+||.+|+.+...
T Consensus 9 d~~~~d~k~r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 9 DDAESDSKDRKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred CcccccchhhhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 4445566666789999999999999999999999999999852 36899999999999999998874
No 9
>KOG4304|consensus
Probab=99.10 E-value=9.1e-11 Score=82.76 Aligned_cols=61 Identities=21% Similarity=0.379 Sum_probs=53.0
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCC-----cccccHHHHHHHHHHHHHHHHHHH
Q psy14769 10 IESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQG-----EKVASRAQILKKAADYIQFMRRKN 70 (90)
Q Consensus 10 ~~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~-----~~k~sK~~iL~~ai~yIk~L~~~~ 70 (90)
.....++..|-.+||+||+.||.|+++|+.+||..-. ..|+.|+.||+.|++|++.|+...
T Consensus 27 ~~~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~ 92 (250)
T KOG4304|consen 27 KTRQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQ 92 (250)
T ss_pred hhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 3445689999999999999999999999999997642 257999999999999999998754
No 10
>KOG3960|consensus
Probab=99.07 E-value=9.3e-10 Score=77.33 Aligned_cols=66 Identities=21% Similarity=0.387 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDID 78 (90)
Q Consensus 12 ~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~ 78 (90)
..++|....+.||||-.++|++|+.|+...-++++.. +.|+.||..||+||..||.-++++.+.-.
T Consensus 115 svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQR-LPKVEILRsAI~YIE~Lq~LL~~~~~~~~ 180 (284)
T KOG3960|consen 115 SVDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQR-LPKVEILRSAIRYIERLQALLQEQDQAEK 180 (284)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-ccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 4678999999999999999999999999997777666 99999999999999999999888765443
No 11
>KOG4029|consensus
Probab=98.93 E-value=8.6e-10 Score=76.57 Aligned_cols=63 Identities=27% Similarity=0.488 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQG-EKVASRAQILKKAADYIQFMRRKNASHQ 74 (90)
Q Consensus 12 ~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~-~~k~sK~~iL~~ai~yIk~L~~~~~~l~ 74 (90)
....|..+|.+||.|-..+|.+|..|+.+||.... .+|+||+.+|..||.||.+|+.-+....
T Consensus 106 ~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~ 169 (228)
T KOG4029|consen 106 TSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQE 169 (228)
T ss_pred hhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccc
Confidence 35578889999999999999999999999999987 8899999999999999999998766543
No 12
>KOG2588|consensus
Probab=98.91 E-value=7.4e-10 Score=88.58 Aligned_cols=66 Identities=33% Similarity=0.539 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLK 81 (90)
Q Consensus 14 ~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~ 81 (90)
.+|.+||.+||++|..||+.|.+|+.+||+. ..|..|..+|..||+||.+|+..+..+.++...++
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~--~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGT--EAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCcc--HhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 6899999999999999999999999999998 44799999999999999999999999998888777
No 13
>PLN03217 transcription factor ATBS1; Provisional
Probab=98.39 E-value=1.6e-06 Score=52.03 Aligned_cols=56 Identities=23% Similarity=0.442 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhcCCCCCC---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 27 RDHIKDSFSSLRDSVPSLQG---EKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKR 82 (90)
Q Consensus 27 R~~i~~~~~~L~~llP~~~~---~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~ 82 (90)
-+.|++.+..|+.++|.... ..+.|-+-||+.|+.||+.|+.++..|-+.+.+|-.
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~ 77 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLA 77 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36799999999999998642 346999999999999999999998888877776643
No 14
>KOG4447|consensus
Probab=98.13 E-value=1.8e-06 Score=57.02 Aligned_cols=56 Identities=36% Similarity=0.615 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHH
Q psy14769 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRK 69 (90)
Q Consensus 13 ~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~ 69 (90)
..+|..||..|++|-..+|++|..|+.++|..+..+ +||.-.|+.|.-||-+|-+-
T Consensus 76 q~qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdk-lSkiqtLklA~ryidfl~~v 131 (173)
T KOG4447|consen 76 QKQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDK-LSKIQTLKLAARYIDFLYQV 131 (173)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccc-cccccchhhcccCCchhhhc
Confidence 348999999999999999999999999999998666 99999999999999887653
No 15
>KOG3898|consensus
Probab=98.08 E-value=1.3e-06 Score=61.83 Aligned_cols=56 Identities=29% Similarity=0.427 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHH
Q psy14769 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRR 68 (90)
Q Consensus 13 ~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~ 68 (90)
..+|..-|..||+|...+|++|+.|+.+||......|++|..+|..|-+||-.|..
T Consensus 70 ~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 70 TLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred hhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 55788999999999999999999999999976666679999999999999998875
No 16
>KOG3910|consensus
Probab=98.05 E-value=9.3e-06 Score=62.11 Aligned_cols=61 Identities=26% Similarity=0.332 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCC-CCcccccHHHHHHHHHHHHHHHHHHHHH
Q psy14769 12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSL-QGEKVASRAQILKKAADYIQFMRRKNAS 72 (90)
Q Consensus 12 ~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~-~~~~k~sK~~iL~~ai~yIk~L~~~~~~ 72 (90)
+.+||+..|++||-|-..||++|.+|+.+.-.. ...+--.|..||..||..|-.|++.+++
T Consensus 523 EkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 523 EKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred HHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999987543 3344578999999999999999998876
No 17
>KOG4395|consensus
Probab=98.03 E-value=8.1e-06 Score=57.74 Aligned_cols=58 Identities=29% Similarity=0.375 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHH
Q psy14769 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKN 70 (90)
Q Consensus 13 ~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~ 70 (90)
..+|..-|..|++|...+|.+|+.|+.+||.....+++||-..|+.|-.||--|-...
T Consensus 172 ~~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 172 SHRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred HhhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 3578899999999999999999999999999988889999999999999998876544
No 18
>KOG3582|consensus
Probab=96.02 E-value=0.00094 Score=53.16 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCC--CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQ--GEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 14 ~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~--~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
.+.++|...|++||.+++-+|+.|-+++.... ...|+++.+.++.++.||..++.+...+..+--.|+.+...+.
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr~~~s~~~ 726 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLRKEISELN 726 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhhhhhHHHH
Confidence 57899999999999999999999988875432 2346999999999999999888887776666666666655554
No 19
>KOG4447|consensus
Probab=93.79 E-value=0.14 Score=34.11 Aligned_cols=50 Identities=20% Similarity=0.255 Sum_probs=41.6
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHH
Q psy14769 22 LERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNAS 72 (90)
Q Consensus 22 ~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~ 72 (90)
.|+.|-..+++.|.-|+.++|+.+..+ +++.-.|..+.+||.++.+-..+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~g-k~~~ktlr~~~~~~~~~dE~q~q 78 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADG-KRGKKTLRIGTDSIQSLDELQKQ 78 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcc-cccccccccCCCchhhHHHHHHH
Confidence 488999999999999999999988666 66666688899999888766553
No 20
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.42 E-value=0.48 Score=27.54 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 56 LKKAADYIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 56 L~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
+..||+-|..|+.++.+|+.+...|..++..|
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~~e~~~L 44 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELKEENEEL 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 46788889999998888888755544444444
No 21
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.61 E-value=0.81 Score=26.67 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 56 LKKAADYIQFMRRKNASHQQDIDDLKRQNA 85 (90)
Q Consensus 56 L~~ai~yIk~L~~~~~~l~~~~~~L~~~~~ 85 (90)
++.||+-|.-||-++.+|.++...|..+.+
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e~q 42 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 455667776666666666555554444433
No 22
>smart00338 BRLZ basic region leucin zipper.
Probab=91.51 E-value=0.57 Score=26.16 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
.||..|+..+..|..++..|..++..|
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l 52 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERL 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544444444
No 23
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=90.30 E-value=1.2 Score=24.81 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
.||..|+..+..|..++..|..++..|.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~ 53 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLK 53 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555444443
No 24
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.21 E-value=1.5 Score=26.01 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 56 LKKAADYIQFMRRKNASHQQDIDDLKRQNAI 86 (90)
Q Consensus 56 L~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~ 86 (90)
++.||+-|.-|+-++.+++.+...|..++..
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888776666665443
No 25
>KOG3560|consensus
Probab=89.99 E-value=0.35 Score=38.22 Aligned_cols=42 Identities=17% Similarity=0.391 Sum_probs=35.4
Q ss_pred HhHHHHHHHHHHHHHhhcCCCCCCc-ccccHHHHHHHHHHHHH
Q psy14769 23 ERKRRDHIKDSFSSLRDSVPSLQGE-KVASRAQILKKAADYIQ 64 (90)
Q Consensus 23 Er~RR~~i~~~~~~L~~llP~~~~~-~k~sK~~iL~~ai~yIk 64 (90)
-+|-|+.+|.-++.|.+++|-..+- .|++|.+||..++-|++
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 3566889999999999999976532 36999999999999975
No 26
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=89.87 E-value=2.2 Score=23.82 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=38.5
Q ss_pred HHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 34 FSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 34 ~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+..+..++|.. +..-...|..+.+.=..+-.+...+..+++.|++++.+|+.
T Consensus 3 W~~~~~vip~~----~~~~W~~L~~~l~rY~~vL~~R~~l~~e~~~L~~qN~eLr~ 54 (60)
T PF14775_consen 3 WERLANVIPDE----KIRLWDALENFLKRYNKVLLDRAALIQEKESLEQQNEELRS 54 (60)
T ss_pred HHHHhhcCChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888876 35557788888766555556667777888999999988863
No 27
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=89.82 E-value=1.5 Score=23.69 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 60 ADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 60 i~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
-.|+..|+..+..|..++..|..++..|+.
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457777888888888888888888887764
No 28
>PHA03386 P10 fibrous body protein; Provisional
Probab=89.13 E-value=0.9 Score=27.73 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=32.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 50 ASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 50 ~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
|||..||..-..-|+.+-.++..++.+++.++.-...|.+
T Consensus 1 MSKpnILl~Ir~dIkavd~KVdaLQ~qV~dv~~n~~~LDa 40 (94)
T PHA03386 1 MSKPSVLTQILDAVQEVDTKVDALQTQLNGLEEDSQPLDG 40 (94)
T ss_pred CCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHhcchhhhh
Confidence 6889999999999999999999998888888865554443
No 29
>KOG3558|consensus
Probab=88.41 E-value=0.86 Score=36.85 Aligned_cols=49 Identities=18% Similarity=0.330 Sum_probs=38.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcCCCCC-CcccccHHHHHHHHHHHHH
Q psy14769 16 RAHHNALERKRRDHIKDSFSSLRDSVPSLQ-GEKVASRAQILKKAADYIQ 64 (90)
Q Consensus 16 R~~hn~~Er~RR~~i~~~~~~L~~llP~~~-~~~k~sK~~iL~~ai~yIk 64 (90)
|..-.-.-|.||.+=|.-|.+|..+||... ....++|++|+..||-|++
T Consensus 47 kEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 47 KEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 444444567789888999999999999543 2336999999999999987
No 30
>KOG3559|consensus
Probab=87.39 E-value=0.7 Score=35.49 Aligned_cols=44 Identities=20% Similarity=0.392 Sum_probs=36.4
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCCCC-cccccHHHHHHHHHHHHHH
Q psy14769 22 LERKRRDHIKDSFSSLRDSVPSLQG-EKVASRAQILKKAADYIQF 65 (90)
Q Consensus 22 ~Er~RR~~i~~~~~~L~~llP~~~~-~~k~sK~~iL~~ai~yIk~ 65 (90)
.-|.||+.=|.-|.+|..++|.... ...++|++|+..|.-|||-
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 3567888889999999999997641 2249999999999999984
No 31
>KOG4343|consensus
Probab=84.44 E-value=1.6 Score=34.58 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14769 58 KAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90 (90)
Q Consensus 58 ~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~q 90 (90)
+--+|+..|+..++++..+.+.|++|+..|+.|
T Consensus 299 KKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~q 331 (655)
T KOG4343|consen 299 KKKEYMLGLEARLQALLSENEQLKKENATLKRQ 331 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 345899999999999999999999999999865
No 32
>smart00340 HALZ homeobox associated leucin zipper.
Probab=83.71 E-value=4.6 Score=21.18 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 65 FMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 65 ~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+|+.....|-.+...|++++++|++
T Consensus 9 ~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 9 LLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666667777666654
No 33
>PRK14127 cell division protein GpsB; Provisional
Probab=83.61 E-value=5.3 Score=25.02 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14769 54 QILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90 (90)
Q Consensus 54 ~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~q 90 (90)
..|...++-+..|..++..|+.++..|+.++..++.|
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~ 66 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQ 66 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777788888888888888888777653
No 34
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=79.78 E-value=4.8 Score=22.97 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 57 KKAADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 57 ~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
..=|.+...|+.++..|.++...+..+...|.
T Consensus 10 e~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ 41 (65)
T TIGR02449 10 EHLLEYLERLKSENRLLRAQEKTWREERAQLL 41 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777776666666655553
No 35
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=79.49 E-value=8.5 Score=21.63 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q psy14769 52 RAQILKKAADYIQFMRRK-NASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 52 K~~iL~~ai~yIk~L~~~-~~~l~~~~~~L~~~~~~L~ 88 (90)
++.-+++.|.|++.=+.. ...|..||+.|++++..|.
T Consensus 4 qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~ 41 (60)
T PF14916_consen 4 QVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDLT 41 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 345567777777654444 6778888888888877663
No 36
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=78.32 E-value=8.8 Score=21.55 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 62 YIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 62 yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
-|..|+....+++.+++.|+.++..|
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666666666666666655
No 37
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=78.01 E-value=9 Score=21.46 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 65 FMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 65 ~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
-|+..+.+|..++..|+.++..|+
T Consensus 18 vLK~~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 18 VLKEQIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555554
No 38
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=77.52 E-value=11 Score=21.57 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 53 AQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 53 ~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+.-|..|+.-|..|+. +++.|++++..++.
T Consensus 39 ~~~l~~a~~e~~~Lk~-------E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 39 ERQLGDAYEENNKLKE-------ENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhc
Confidence 3445555555555555 55555555555544
No 39
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=77.15 E-value=9.6 Score=25.53 Aligned_cols=16 Identities=13% Similarity=0.366 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14769 53 AQILKKAADYIQFMRR 68 (90)
Q Consensus 53 ~~iL~~ai~yIk~L~~ 68 (90)
...|...|.|+..|+.
T Consensus 79 ~ltl~~vI~fLq~l~~ 94 (161)
T TIGR02894 79 SLTLQDVISFLQNLKT 94 (161)
T ss_pred cCCHHHHHHHHHHHHh
Confidence 4557777777777764
No 40
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=76.35 E-value=14 Score=22.22 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+++++.++.+|..+++.|+.+.+..++
T Consensus 25 ~~ka~~~~~kL~~en~qlk~Ek~~~~~ 51 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKTEKAVAET 51 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666677777777666655443
No 41
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=74.93 E-value=9.4 Score=22.46 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
|..|++++..|+.++..|..+++.+.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888887777776654
No 42
>smart00338 BRLZ basic region leucin zipper.
Probab=74.38 E-value=12 Score=20.57 Aligned_cols=31 Identities=16% Similarity=0.361 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14769 60 ADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90 (90)
Q Consensus 60 i~yIk~L~~~~~~l~~~~~~L~~~~~~L~~q 90 (90)
-.-+..|...+..|..++..|..++..|+.+
T Consensus 32 e~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 32 ERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777888888999999999988888753
No 43
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=73.75 E-value=17 Score=22.55 Aligned_cols=25 Identities=12% Similarity=0.221 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
|..|+..+.++.++...|+-+++.|
T Consensus 24 ~~~LK~~~~~l~EEN~~L~~EN~~L 48 (107)
T PF06156_consen 24 LEELKKQLQELLEENARLRIENEHL 48 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444
No 44
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=73.50 E-value=9.6 Score=21.38 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 62 YIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 62 yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
-+..++.....++.+++.++.++..|+.
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ 45 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKE 45 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777788888888888777764
No 45
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=73.09 E-value=6.7 Score=29.40 Aligned_cols=32 Identities=28% Similarity=0.233 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 58 KAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 58 ~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
.+|+-.-.|++++..|++|++.|+.+++.|+.
T Consensus 29 ~~~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 29 VSIDENFALRMENHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred cchhhhhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35677778999999999999999999999864
No 46
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=72.48 E-value=16 Score=25.03 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 54 QILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 54 ~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
-||..-.-.|+.|+..+.+++.+++.+..++..|+.
T Consensus 5 rvlSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~ 40 (194)
T PF15619_consen 5 RVLSARLHKIKELQNELAELQRKLQELRKENKTLKQ 40 (194)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666778999999999999999999999998874
No 47
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=72.48 E-value=12 Score=23.05 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
+..++.++.+++++...|+.++..|+
T Consensus 36 ~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 36 VAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444555555555555555555543
No 48
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=72.16 E-value=35 Score=25.29 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=33.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 50 ASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 50 ~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
.+=+.+|..+-+..+.|+.++..|++.+.+++..+..|+.
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~ 107 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLRE 107 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 5567889999999999999999999988888887777664
No 49
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=71.78 E-value=21 Score=22.39 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAI 86 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~ 86 (90)
|..|-.++..|+-+.+.|+..+..
T Consensus 31 ~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 31 LAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 50
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=71.71 E-value=16 Score=20.68 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
|..|...+.+.+.+++.|.+++..|..
T Consensus 20 ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 20 IEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777777654
No 51
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.70 E-value=17 Score=21.14 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=24.8
Q ss_pred ccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 50 ASRAQILKKAADYIQ----FMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 50 ~sK~~iL~~ai~yIk----~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
++-...|+.-|+-++ .|+++...+++..+.|.++++.|+.
T Consensus 17 vdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~ 60 (79)
T COG3074 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566776666554 3455566666667777777777654
No 52
>PRK10884 SH3 domain-containing protein; Provisional
Probab=71.55 E-value=13 Score=25.60 Aligned_cols=37 Identities=8% Similarity=0.100 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 53 AQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 53 ~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
..-+..+-..|..|..++++|.+++..++.++..|++
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667888888888888888888888877664
No 53
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=70.90 E-value=9.9 Score=23.41 Aligned_cols=27 Identities=30% Similarity=0.175 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
...++++...+++++..++.+++.|+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~ 55 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFA 55 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777764
No 54
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=70.46 E-value=14 Score=22.33 Aligned_cols=56 Identities=14% Similarity=0.300 Sum_probs=32.6
Q ss_pred HHHHHHHHhhcCCCCCCcccccHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 30 IKDSFSSLRDSVPSLQGEKVASRAQILKKAAD-----YIQFMRRKNASHQQDIDDLKRQNA 85 (90)
Q Consensus 30 i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~-----yIk~L~~~~~~l~~~~~~L~~~~~ 85 (90)
++..++.+..-+=....++.-.|+..|.+.++ -|..|+.++..+..+++.|+.++.
T Consensus 13 v~~~ve~vA~eLh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 13 VEKAVEKVARELHALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555444444444566778888876543 255666666666666666665544
No 55
>KOG3584|consensus
Probab=70.23 E-value=6.3 Score=29.02 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 60 ADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 60 i~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
-+|||-|+..+.=|+.+...|-.|+..|+
T Consensus 311 KEYVKCLENRVAVLENQNKaLIEELKtLK 339 (348)
T KOG3584|consen 311 KEYVKCLENRVAVLENQNKALIEELKTLK 339 (348)
T ss_pred hHHHHHHHhHHHHHhcccHHHHHHHHHHH
Confidence 48999999999999988888888887775
No 56
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=69.95 E-value=3.8 Score=24.36 Aligned_cols=60 Identities=8% Similarity=0.191 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhcCCCCC-----Cc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 29 HIKDSFSSLRDSVPSLQ-----GE--KVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 29 ~i~~~~~~L~~llP~~~-----~~--~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
.+.....+|..+-|... |. .+.++..++..=-+.+..+......+......+..++..++
T Consensus 30 ~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 30 ELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp HHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889988777632 11 14677777777777777777777777777777777666654
No 57
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=69.93 E-value=7.3 Score=24.13 Aligned_cols=29 Identities=17% Similarity=0.278 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 60 ADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 60 i~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
-+||..|......|..++..|..++..|+
T Consensus 24 D~fl~~l~~~~~~l~~e~~~L~~~~~~l~ 52 (131)
T PF05103_consen 24 DDFLDELAEELERLQRENAELKEEIEELQ 52 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666665554
No 58
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=68.63 E-value=24 Score=21.44 Aligned_cols=39 Identities=8% Similarity=0.062 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14769 52 RAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90 (90)
Q Consensus 52 K~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~q 90 (90)
.+.+...-..++..|.....+++.++..|..++..++++
T Consensus 71 ~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~e 109 (109)
T PF03980_consen 71 RAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQRKE 109 (109)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344444455668888888899999999999999888764
No 59
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=68.59 E-value=20 Score=23.48 Aligned_cols=71 Identities=21% Similarity=0.272 Sum_probs=45.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhcCCCCC------------------------------CcccccHHHHHHHHHHHHHHHH
Q psy14769 18 HHNALERKRRDHIKDSFSSLRDSVPSLQ------------------------------GEKVASRAQILKKAADYIQFMR 67 (90)
Q Consensus 18 ~hn~~Er~RR~~i~~~~~~L~~llP~~~------------------------------~~~k~sK~~iL~~ai~yIk~L~ 67 (90)
..-+.+++|-..+++-|+.|..-++-.. ....++...+-....+ |..|+
T Consensus 7 l~y~~~qNRPys~~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~e-i~~L~ 85 (169)
T PF07106_consen 7 LEYMKEQNRPYSAQDIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAE-IKELR 85 (169)
T ss_pred HHHHHHcCCCCcHHHHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHH-HHHHH
Confidence 3445667777777788888777665211 1112344444444444 88888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy14769 68 RKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 68 ~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
.++..+..++..|..++..|.+
T Consensus 86 ~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 86 EELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888888888777754
No 60
>KOG3119|consensus
Probab=65.96 E-value=46 Score=23.79 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 57 KKAADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 57 ~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
...---|..|..++..|+.++++|+.++..|+
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344578888999999999999999888775
No 61
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=64.90 E-value=25 Score=20.29 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
|..|+..+..+..+...|..+++.|+
T Consensus 27 ~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 27 NEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666665
No 62
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=63.87 E-value=28 Score=20.58 Aligned_cols=15 Identities=7% Similarity=-0.066 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy14769 62 YIQFMRRKNASHQQD 76 (90)
Q Consensus 62 yIk~L~~~~~~l~~~ 76 (90)
.|..||..+..|-..
T Consensus 24 ei~~LQ~sL~~L~~R 38 (80)
T PF10224_consen 24 EILELQDSLEALSDR 38 (80)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 63
>PRK11239 hypothetical protein; Provisional
Probab=63.18 E-value=16 Score=25.55 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILEAQ 90 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~q 90 (90)
+..|+.++..|+.++..|+..++.|..|
T Consensus 185 ~~~Le~rv~~Le~eva~L~~~l~~l~~~ 212 (215)
T PRK11239 185 DGDLQARVEALEIEVAELKQRLDSLLAH 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3558888999999999998888888754
No 64
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=62.90 E-value=19 Score=20.95 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14769 66 MRRKNASHQQDIDDLKRQNAILEAQ 90 (90)
Q Consensus 66 L~~~~~~l~~~~~~L~~~~~~L~~q 90 (90)
+...+..++.+++.|..++..|++|
T Consensus 55 q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 55 QKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445556667777777777777764
No 65
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=62.34 E-value=27 Score=27.28 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 53 AQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 53 ~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
...|..-+.-++.++.+...+..+.+.|+.+++.|++
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777788888888888888888888888865
No 66
>KOG4005|consensus
Probab=62.29 E-value=20 Score=25.73 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=20.0
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 60 ADY-IQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 60 i~y-Ik~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
++| |+.|.++++.|+.+.+.|+..++.|
T Consensus 95 me~~i~dL~een~~L~~en~~Lr~~n~~L 123 (292)
T KOG4005|consen 95 MEYEIKDLTEENEILQNENDSLRAINESL 123 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 7888888888877777777666555
No 67
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=62.26 E-value=75 Score=25.32 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=24.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhcCCCCC
Q psy14769 17 AHHNALERKRRDHIKDSFSSLRDSVPSLQ 45 (90)
Q Consensus 17 ~~hn~~Er~RR~~i~~~~~~L~~llP~~~ 45 (90)
...+..|.+=+..|..+...|..+.|.|.
T Consensus 220 R~RdlaEeNl~kEi~~~~~~l~~l~~lc~ 248 (538)
T PF05781_consen 220 RSRDLAEENLKKEIENCLKLLESLAPLCW 248 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 34577888888899999999999999865
No 68
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=62.23 E-value=15 Score=20.18 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 64 QFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 64 k~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
-.+..+...++.+++.++++++.|+
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4456777788888888888887764
No 69
>KOG4571|consensus
Probab=61.96 E-value=25 Score=25.76 Aligned_cols=30 Identities=13% Similarity=0.273 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 60 ADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 60 i~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
..-+..|..++.+|+.+...|.+|++.|++
T Consensus 254 ~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 254 LGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777776654
No 70
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=61.66 E-value=40 Score=23.70 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 60 ADYIQFMRRKNASHQQDIDDLKRQNAI 86 (90)
Q Consensus 60 i~yIk~L~~~~~~l~~~~~~L~~~~~~ 86 (90)
+..+..|.+++++|+.++..|+.++..
T Consensus 68 ~~~~~~l~~en~~L~~e~~~l~~~~~~ 94 (276)
T PRK13922 68 LASLFDLREENEELKKELLELESRLQE 94 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666667776666666555553
No 71
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=61.16 E-value=23 Score=21.91 Aligned_cols=25 Identities=16% Similarity=0.103 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 60 ADYIQFMRRKNASHQQDIDDLKRQN 84 (90)
Q Consensus 60 i~yIk~L~~~~~~l~~~~~~L~~~~ 84 (90)
-+-|..|...+.+++.+++-|++-.
T Consensus 77 ~~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 77 MKQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555443
No 72
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=60.75 E-value=29 Score=19.73 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 64 QFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 64 k~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+.|..++..|-...+.|+.++..|++
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~ 28 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRA 28 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555554
No 73
>KOG3582|consensus
Probab=60.69 E-value=1.8 Score=35.25 Aligned_cols=65 Identities=22% Similarity=0.181 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCC--CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQ--GEKVASRAQILKKAADYIQFMRRKNASHQQDIDDL 80 (90)
Q Consensus 13 ~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~--~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L 80 (90)
...+..|.-.+|++|..+.++|..|-.+.|... ...+.++.+||. +.|+.++++-+.+.+.+..+
T Consensus 785 ~~v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~~k 851 (856)
T KOG3582|consen 785 GMVSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIEGK 851 (856)
T ss_pred ceeecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhhhh
Confidence 446778899999999999999999999998642 344699999999 89999999888877766544
No 74
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=60.60 E-value=19 Score=19.11 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 54 QILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 54 ~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
.||+.+.++|. +.+..+..++..|.+.-+.|-
T Consensus 8 elLqe~~d~IE---qkiedid~qIaeLe~KR~~Lv 39 (46)
T PF08946_consen 8 ELLQEHYDNIE---QKIEDIDEQIAELEAKRQRLV 39 (46)
T ss_dssp -------THHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHH---HhHHHHHHHHHHHHHHHHHHH
Confidence 57777777774 556666677777776666553
No 75
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=60.49 E-value=35 Score=20.53 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 58 KAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 58 ~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
-.+-++-++--...+++.++..|..+++.|+.
T Consensus 13 v~~~i~~y~~~k~~ka~~~~~kL~~en~qlk~ 44 (87)
T PF10883_consen 13 VVALILAYLWWKVKKAKKQNAKLQKENEQLKT 44 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666667777777766653
No 76
>PRK14127 cell division protein GpsB; Provisional
Probab=60.37 E-value=25 Score=21.99 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
+|+..+-.....+..++..|+.++..|+
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~ 57 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLK 57 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555544
No 77
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=59.92 E-value=27 Score=19.11 Aligned_cols=27 Identities=15% Similarity=0.401 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+..|...+..|..++..|..++..|..
T Consensus 35 ~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 35 VEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667777777777777777776654
No 78
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=59.61 E-value=24 Score=24.50 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 54 QILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 54 ~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
.-|..|++-...|+..+..+..++..|+.++..|.
T Consensus 118 ~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~ 152 (200)
T PF07412_consen 118 KALEEALEENEKLHKEIEQKDEEIAKLKEENEELK 152 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888888888888887776654
No 79
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=59.36 E-value=32 Score=19.68 Aligned_cols=57 Identities=14% Similarity=0.247 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhh
Q psy14769 28 DHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDID--DLKRQNAILEA 89 (90)
Q Consensus 28 ~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~--~L~~~~~~L~~ 89 (90)
..++..+..++.-.|... ..+..+| .|+++...+.....+...... .+..+++.|..
T Consensus 28 ~~i~~~i~~~~~~~~~~~----~~~~~vl-aaLnla~e~~~~~~~~~~~~~~~~l~~~i~~L~~ 86 (89)
T PF05164_consen 28 ELINEKINEIKKKYPKLS----PERLAVL-AALNLADELLKLKRELDELEELERLEERIEELNE 86 (89)
T ss_dssp HHHHHHHHHHCTTCCTSS----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCC----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 568888999998877542 3334433 566665555555555544444 77777777653
No 80
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=59.17 E-value=27 Score=24.10 Aligned_cols=64 Identities=16% Similarity=0.253 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14769 26 RRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90 (90)
Q Consensus 26 RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~q 90 (90)
+-..+...-..|..-||.+.... .-+-.++..-...|..|...+.++..-...|+.++.+|+.|
T Consensus 124 ~~~eL~~~~~~Lq~Ql~~~e~l~-~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeq 187 (193)
T PF14662_consen 124 RSKELATEKATLQRQLCEFESLI-CQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQ 187 (193)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555443222 45567777777888888888888888888888888888754
No 81
>PRK00295 hypothetical protein; Provisional
Probab=59.09 E-value=31 Score=19.53 Aligned_cols=25 Identities=32% Similarity=0.283 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
|..|...+.+.+.++..|.+++..|
T Consensus 21 ie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 21 IQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666666555
No 82
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=59.03 E-value=25 Score=18.41 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 65 FMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 65 ~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
.|......|..+++.|+.++..|.
T Consensus 16 ~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 16 SLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777777777776664
No 83
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=58.75 E-value=24 Score=20.14 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy14769 73 HQQDIDDLKRQNAILEA 89 (90)
Q Consensus 73 l~~~~~~L~~~~~~L~~ 89 (90)
.-.++..|+.+++.|++
T Consensus 45 a~~e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 45 AYEENNKLKEENEALRK 61 (69)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44677788888888875
No 84
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=58.22 E-value=18 Score=28.36 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDL 80 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L 80 (90)
|..|++++++|++++..|
T Consensus 33 ie~L~kql~~Lk~q~~~l 50 (489)
T PF11853_consen 33 IEALKKQLEELKAQQDDL 50 (489)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 334444444444443333
No 85
>PRK04406 hypothetical protein; Provisional
Probab=57.01 E-value=35 Score=19.77 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
|..|...+.+.+.++..|.+++..|
T Consensus 27 Ie~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 27 IEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555556666666665555
No 86
>PRK02119 hypothetical protein; Provisional
Probab=56.15 E-value=37 Score=19.51 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
|..|...+.+.+.++..|.+++..|
T Consensus 25 ie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 25 LEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666666666555
No 87
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=54.69 E-value=44 Score=24.90 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14769 54 QILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90 (90)
Q Consensus 54 ~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~q 90 (90)
.++..+++-+..|+..+..|..+.+.|..+...|.+|
T Consensus 130 el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~q 166 (342)
T PF06632_consen 130 ELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQ 166 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777778888888888888888887777666543
No 88
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=53.37 E-value=40 Score=21.12 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 60 ADYIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 60 i~yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
...+..|+.++..|++|..-|+-+++.|
T Consensus 71 ~~e~~rlkkk~~~LeEENNlLklKievL 98 (108)
T cd07429 71 GREVLRLKKKNQQLEEENNLLKLKIEVL 98 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777778887877777776654
No 89
>PRK02793 phi X174 lysis protein; Provisional
Probab=53.12 E-value=42 Score=19.20 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
|..|.+.+.+.+.++..|.+++..|
T Consensus 24 Ie~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 24 IEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666666665555
No 90
>PRK00736 hypothetical protein; Provisional
Probab=53.07 E-value=41 Score=19.04 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
|..|...+.+.+.++..|.+++..|
T Consensus 21 ie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 21 IEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666666666555
No 91
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=52.84 E-value=40 Score=18.88 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
++.-...+..|..++..|+.++..++.
T Consensus 34 LqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 34 LQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344445556666666666666666553
No 92
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=52.07 E-value=1.2e+02 Score=24.17 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCC-------cccccHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 25 KRRDHIKDSFSSLRDSVPSLQG-------EKVASRAQ-------ILKKAADYIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 25 ~RR~~i~~~~~~L~~llP~~~~-------~~k~sK~~-------iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
++...++..+..|+...|.... .+..+-.. -+....+-|..|.++.++++++++.++.+...|
T Consensus 50 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l 126 (646)
T PRK05771 50 SLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERL 126 (646)
T ss_pred HHHHHHHHHHHHHHHhccccccchhhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455678888888777765321 11112222 233344445555555555555555555555544
No 93
>KOG0709|consensus
Probab=51.75 E-value=17 Score=28.23 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=11.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Q psy14769 50 ASRAQILKKAADYIQFMRRKNAS 72 (90)
Q Consensus 50 ~sK~~iL~~ai~yIk~L~~~~~~ 72 (90)
.|+..-=.+--+||..|+.++..
T Consensus 261 ~SAQESRrkKkeYid~LE~rv~~ 283 (472)
T KOG0709|consen 261 RSAQESRRKKKEYIDGLESRVSA 283 (472)
T ss_pred hhhHHHHHhHhhHHHHHhhhhhh
Confidence 33333344444566665555443
No 94
>PF04839 PSRP-3_Ycf65: Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65); InterPro: IPR006924 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This small acidic protein is found in 30S ribosomal subunit of cyanobacteria and plant plastids. In plants it has been named plastid-specific ribosomal protein 3 (PSRP-3), and in cyanobacteria it is named Ycf65. Plastid-specific ribosomal proteins may mediate the effects of nuclear factors on plastid translation. The acidic PSRPs are thought to contribute to protein-protein interactions in the 30S subunit, and are not thought to bind RNA [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome, 0009536 plastid; PDB: 2KT9_A.
Probab=51.32 E-value=12 Score=20.13 Aligned_cols=37 Identities=19% Similarity=0.378 Sum_probs=24.9
Q ss_pred HHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHH
Q psy14769 32 DSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRR 68 (90)
Q Consensus 32 ~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~ 68 (90)
++++.|+..+-+-+=-....++.||..+.+-|.+=|+
T Consensus 11 DAWe~lk~eLe~K~WIs~~e~i~lLN~~TeiIN~Wqe 47 (49)
T PF04839_consen 11 DAWEQLKNELESKPWISEKERIELLNQATEIINYWQE 47 (49)
T ss_dssp -HHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 4666666666443322247889999999999988765
No 95
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=50.88 E-value=47 Score=19.09 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAI 86 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~ 86 (90)
|+.|...+.+++..+..|...+..
T Consensus 35 IKKLr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 35 IKKLRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555544443
No 96
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=50.46 E-value=39 Score=17.99 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 53 AQILKKAADYIQFMRRKNASHQQDIDDLKRQ 83 (90)
Q Consensus 53 ~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~ 83 (90)
+..-..+..+|..|......+-..++.|..+
T Consensus 15 v~FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn~ 45 (47)
T PF10393_consen 15 VAFQNKVTSALQSLTQKLDAVSKRLEALENR 45 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344566677888887776666666666554
No 97
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=50.37 E-value=59 Score=20.12 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
..|..|-+++..|+-+...|+..+..+.
T Consensus 29 ~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 29 KQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777777777777766653
No 98
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=49.70 E-value=46 Score=19.70 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=18.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhh
Q psy14769 50 ASRAQILKKAADYIQFMRRKNASHQQDID-------DLKRQNAILEA 89 (90)
Q Consensus 50 ~sK~~iL~~ai~yIk~L~~~~~~l~~~~~-------~L~~~~~~L~~ 89 (90)
++-..+|+.-|+- |+.++..+.+++. .|..+++.|+.
T Consensus 17 vdtI~LLqmEieE---LKekn~~L~~e~~~~~~~r~~L~~en~qLk~ 60 (79)
T PRK15422 17 IDTITLLQMEIEE---LKEKNNSLSQEVQNAQHQREELERENNHLKE 60 (79)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3445556655544 4444444444433 36666666553
No 99
>KOG4196|consensus
Probab=49.63 E-value=61 Score=21.07 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=10.2
Q ss_pred HHHhHHHHHHHHHHHH
Q psy14769 21 ALERKRRDHIKDSFSS 36 (90)
Q Consensus 21 ~~Er~RR~~i~~~~~~ 36 (90)
..-++||..=|.+|..
T Consensus 51 rlKQrRRTLKNRGYA~ 66 (135)
T KOG4196|consen 51 RLKQRRRTLKNRGYAQ 66 (135)
T ss_pred HHHHHHHHHhhhhHHH
Confidence 3456677666677765
No 100
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=49.40 E-value=44 Score=19.86 Aligned_cols=21 Identities=10% Similarity=0.109 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14769 57 KKAADYIQFMRRKNASHQQDI 77 (90)
Q Consensus 57 ~~ai~yIk~L~~~~~~l~~~~ 77 (90)
.++-+-|-.+|..++.|+.+.
T Consensus 11 eK~k~Kiae~Q~rlK~Le~qk 31 (83)
T PF14193_consen 11 EKTKEKIAELQARLKELEAQK 31 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 101
>KOG0709|consensus
Probab=49.35 E-value=67 Score=25.13 Aligned_cols=52 Identities=23% Similarity=0.291 Sum_probs=33.5
Q ss_pred HHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 21 ALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 21 ~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+-|.||+. ++.++.|..-|-.+.... +.|++++.+|+.....|-+++..|+.
T Consensus 263 AQESRrkK--keYid~LE~rv~~~taeN---------------qeL~kkV~~Le~~N~sLl~qL~klQt 314 (472)
T KOG0709|consen 263 AQESRRKK--KEYIDGLESRVSAFTAEN---------------QELQKKVEELELSNRSLLAQLKKLQT 314 (472)
T ss_pred hHHHHHhH--hhHHHHHhhhhhhcccCc---------------HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 33666665 688888887775543222 45677777777777777666666654
No 102
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=49.26 E-value=38 Score=25.13 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 65 FMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 65 ~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
.+.+.+.+|+.++..|++++..|++
T Consensus 293 e~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 293 EAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445555555566666666665544
No 103
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=49.22 E-value=31 Score=23.18 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 52 RAQILKKAADYIQFMRRKNASHQQDIDDLKRQN 84 (90)
Q Consensus 52 K~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~ 84 (90)
+.++|+.-++--..|...++.|+.|+.+|+.|+
T Consensus 15 RnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 15 RNALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHCH--------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555556666666666666666665
No 104
>PF10454 DUF2458: Protein of unknown function (DUF2458); InterPro: IPR018858 This entry represents a family of uncharacterised proteins.
Probab=48.62 E-value=42 Score=22.02 Aligned_cols=39 Identities=21% Similarity=0.144 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 51 SRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 51 sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+..+.-..|..||..+-..+......+..|.+++..++.
T Consensus 3 ~~It~w~~ALryv~~~v~~n~~~~~~Ir~Li~~Q~~~Er 41 (150)
T PF10454_consen 3 STITTWPAALRYVMKTVAQNPEFLQRIRRLIKEQHDHER 41 (150)
T ss_pred hhhhcHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 445555667777766666666666666666665555543
No 105
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=48.51 E-value=34 Score=16.76 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 66 MRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 66 L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
|-...+.|+...++|+..++.|+
T Consensus 6 L~sekeqLrrr~eqLK~kLeqlr 28 (32)
T PF02344_consen 6 LISEKEQLRRRREQLKHKLEQLR 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555665555554
No 106
>PHA01750 hypothetical protein
Probab=48.48 E-value=52 Score=18.94 Aligned_cols=6 Identities=33% Similarity=0.224 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy14769 57 KKAADY 62 (90)
Q Consensus 57 ~~ai~y 62 (90)
..|++-
T Consensus 33 kdAvke 38 (75)
T PHA01750 33 KDAVKE 38 (75)
T ss_pred HHHHHH
Confidence 334433
No 107
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=48.12 E-value=1.1e+02 Score=22.48 Aligned_cols=57 Identities=12% Similarity=0.276 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 25 KRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNA 85 (90)
Q Consensus 25 ~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~ 85 (90)
.+...++.-+..|+.+......+. ...|..+-+=|..+...+.....+++.++.++.
T Consensus 179 ~~~~~L~~e~~~L~~~~~e~~~~d----~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~ 235 (312)
T smart00787 179 DRKDALEEELRQLKQLEDELEDCD----PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQ 235 (312)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666665543333 334444444444444444443333333333333
No 108
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=47.95 E-value=47 Score=21.18 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy14769 69 KNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 69 ~~~~l~~~~~~L~~~~~~L~~ 89 (90)
....|+.+++.|..+++.+++
T Consensus 113 ~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 113 RLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344444555555555555444
No 109
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=47.45 E-value=53 Score=18.69 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
+..++.+..+++.+...|+.++..|
T Consensus 33 ~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 33 LQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555554443
No 110
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=47.08 E-value=63 Score=19.50 Aligned_cols=29 Identities=10% Similarity=0.001 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 59 AADYIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 59 ai~yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
++.-|-.|-++.+.|++++..|++++...
T Consensus 69 gialvl~LLd~i~~Lr~el~~L~~~l~~~ 97 (101)
T PRK10265 69 GIAVALTLLDEIAHLKQENRLLRQRLSRF 97 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777777766544
No 111
>PRK04325 hypothetical protein; Provisional
Probab=46.90 E-value=56 Score=18.80 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
|..|...+.+.+.++..|.+++..|
T Consensus 25 Ie~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 25 IDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555554
No 112
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=46.63 E-value=78 Score=22.24 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhh
Q psy14769 52 RAQILKKAADYIQFMRRKNASHQQDID---DLKRQNAILEA 89 (90)
Q Consensus 52 K~~iL~~ai~yIk~L~~~~~~l~~~~~---~L~~~~~~L~~ 89 (90)
...-+....+-.+.|++++.+|+.+.. .++.+++.|+.
T Consensus 67 ~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 67 SLASLFDLREENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666777777777766555 45666666653
No 113
>PF10465 Inhibitor_I24: PinA peptidase inhibitor ; InterPro: IPR019506 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. PinA inhibits the endopeptidase La. It binds to the La homotetramer but does not interfere with the ATP binding site or the active site of La.
Probab=45.88 E-value=23 Score=22.85 Aligned_cols=19 Identities=21% Similarity=0.604 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14769 52 RAQILKKAADYIQFMRRKN 70 (90)
Q Consensus 52 K~~iL~~ai~yIk~L~~~~ 70 (90)
...+++.|.+||.+|+...
T Consensus 121 EgnLMQAAAeYIewLE~ql 139 (140)
T PF10465_consen 121 EGNLMQAAAEYIEWLETQL 139 (140)
T ss_pred hhhHHHHHHHHHHHHHhhc
Confidence 4778999999999998753
No 114
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=45.58 E-value=1.1e+02 Score=21.89 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 58 KAADYIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 58 ~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
.|.+.|..|...-..+...+..|+.++..-
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ 206 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQ 206 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666555443
No 115
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=45.43 E-value=51 Score=19.60 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 55 ILKKAADYIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 55 iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
-+...-+-|+.|+.+...+..++..+..++..|
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444445555666666666666666666655544
No 116
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=45.10 E-value=1.5e+02 Score=23.56 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHH
Q psy14769 24 RKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRK 69 (90)
Q Consensus 24 r~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~ 69 (90)
-.=+..|++.|..|..+.-.+. . -..+..||.+|-.....+...
T Consensus 107 ~sl~~~L~~ff~s~q~la~~P~-~-~a~r~~vl~~a~~l~~~in~~ 150 (552)
T COG1256 107 SSLSTLLNDFFNSLQELASNPS-D-TAARQAVLSKAQTLVNQINNT 150 (552)
T ss_pred ccHHHHHHHHHHHHHHHHhCcc-c-HHHHHHHHHHHHHHHHHHHHH
Confidence 4455677788888887774432 1 255566666665444443333
No 117
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=44.94 E-value=54 Score=18.12 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNA 85 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~ 85 (90)
|..|..++.+|..++..++..+.
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544443
No 118
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=44.49 E-value=25 Score=23.65 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 56 LKKAADYIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 56 L~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
|..||+---.|+.+++ |.+.|+.+++.|
T Consensus 9 lN~AIERnalLE~ELd----EKE~L~~~~QRL 36 (166)
T PF04880_consen 9 LNQAIERNALLESELD----EKENLREEVQRL 36 (166)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHCH---
T ss_pred HHHHHHHhHHHHHHHH----HHHHHHHHHHHH
Confidence 6778888888887773 344444444444
No 119
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=43.99 E-value=44 Score=26.08 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 60 ADYIQFMRRKNASHQQDIDDLKRQNA 85 (90)
Q Consensus 60 i~yIk~L~~~~~~l~~~~~~L~~~~~ 85 (90)
.+-|+.|+.++..|+.++.+|+..+.
T Consensus 24 a~~i~~L~~ql~aLq~~v~eL~~~la 49 (514)
T PF11336_consen 24 ADQIKALQAQLQALQDQVNELRAKLA 49 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678899999999999999988765
No 120
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=43.77 E-value=54 Score=23.28 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 62 YIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 62 yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
-+..|++++..+.+++..|+.++..|++
T Consensus 94 Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666653
No 121
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=43.66 E-value=80 Score=19.72 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 57 KKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 57 ~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
.....-|..|+..+.++.++...|+-++..|+.
T Consensus 18 ~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 18 GVLLKELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667777777777777778888777763
No 122
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=42.31 E-value=90 Score=22.07 Aligned_cols=28 Identities=11% Similarity=0.236 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
+-+.+|...+.+|..+++.+..+++.|.
T Consensus 122 e~~~wl~~~Id~L~~QiE~~E~E~E~L~ 149 (233)
T PF04065_consen 122 EARDWLKDSIDELNRQIEQLEAEIESLS 149 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555556666655555544
No 123
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=41.99 E-value=76 Score=20.07 Aligned_cols=11 Identities=18% Similarity=0.129 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q psy14769 63 IQFMRRKNASH 73 (90)
Q Consensus 63 Ik~L~~~~~~l 73 (90)
|+.+..++..+
T Consensus 25 lr~~E~E~~~l 35 (120)
T PF12325_consen 25 LRRLEGELASL 35 (120)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 124
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=41.38 E-value=46 Score=19.98 Aligned_cols=14 Identities=14% Similarity=0.081 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHh
Q psy14769 75 QDIDDLKRQNAILE 88 (90)
Q Consensus 75 ~~~~~L~~~~~~L~ 88 (90)
-+...|+.++..|+
T Consensus 51 ~EN~rL~ee~rrl~ 64 (86)
T PF12711_consen 51 MENIRLREELRRLQ 64 (86)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555554443
No 125
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=41.14 E-value=94 Score=19.78 Aligned_cols=60 Identities=10% Similarity=0.156 Sum_probs=38.3
Q ss_pred HHHHHHHHhhcCCCCC-----C--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 30 IKDSFSSLRDSVPSLQ-----G--EKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 30 i~~~~~~L~~llP~~~-----~--~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+...+.+|..+-+..+ | -.+++|-.++..-=+-+..|.-++..|+.+.+.+..++..|+.
T Consensus 39 ~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~ 105 (119)
T COG1382 39 IEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQS 105 (119)
T ss_pred HHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777766655443 1 1257777777766666667777777777766667666666653
No 126
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=40.95 E-value=42 Score=18.95 Aligned_cols=36 Identities=25% Similarity=0.208 Sum_probs=23.2
Q ss_pred ccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 50 ASRAQILKKAADY--IQFMRRKNASHQQDIDDLKRQNA 85 (90)
Q Consensus 50 ~sK~~iL~~ai~y--Ik~L~~~~~~l~~~~~~L~~~~~ 85 (90)
..-..|.+.+... +-.|.+...-|+.+++.|+.+..
T Consensus 12 a~~~~i~~d~LsllsV~El~eRIalLq~EIeRlkAe~~ 49 (65)
T COG5509 12 AFGHEIGNDALSLLSVAELEERIALLQAEIERLKAELA 49 (65)
T ss_pred ccccccchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554333 66777777888888888777654
No 127
>KOG4797|consensus
Probab=40.87 E-value=93 Score=19.67 Aligned_cols=28 Identities=14% Similarity=0.385 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
+-+.-|+....+|...+..|++++..|+
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666665554
No 128
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=40.36 E-value=49 Score=26.81 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 62 YIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 62 yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
-+..|+.++..|+.++++++++++.|+
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~ 456 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLE 456 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555554
No 129
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=40.27 E-value=60 Score=18.96 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=9.0
Q ss_pred HHHHHHHHHhhcCCCCC
Q psy14769 29 HIKDSFSSLRDSVPSLQ 45 (90)
Q Consensus 29 ~i~~~~~~L~~llP~~~ 45 (90)
.|+..|...+.+|-..+
T Consensus 32 ~lk~Klq~ar~~i~~lp 48 (83)
T PF07544_consen 32 SLKHKLQKARAAIRELP 48 (83)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 35555555555554443
No 130
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=40.23 E-value=66 Score=17.72 Aligned_cols=22 Identities=9% Similarity=0.367 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQN 84 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~ 84 (90)
|..++.++.++...++.+.+-+
T Consensus 16 i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554443
No 131
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=40.19 E-value=69 Score=23.27 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 62 YIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 62 yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
-++.|++....|+.+++.|.++.+.+++
T Consensus 5 ~L~eL~qrk~~Lq~eIe~LerR~~ri~~ 32 (283)
T PF11285_consen 5 ALKELEQRKQALQIEIEQLERRRERIEK 32 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888887777653
No 132
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=39.24 E-value=1e+02 Score=20.18 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 58 KAADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 58 ~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
..+.||+.++.....+..++.+|......++
T Consensus 44 ~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e 74 (162)
T PF05565_consen 44 NIAKVIKNLEADIEAIKAEIKRLQERKKSIE 74 (162)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888877777777776555443
No 133
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=38.93 E-value=99 Score=19.39 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 57 KKAADYIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 57 ~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
..|.+||..+....+++..+...|..+++.|
T Consensus 38 ~ea~~F~~kV~~qH~~~~~e~r~L~kKi~~l 68 (109)
T PF11690_consen 38 KEAYDFIDKVVDQHQRYCDERRKLRKKIQDL 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667666666666655555555555444
No 134
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=38.90 E-value=58 Score=21.57 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhc
Q psy14769 14 EKRAHHNALERKRRDHIKDSFSSLRDS 40 (90)
Q Consensus 14 ~~R~~hn~~Er~RR~~i~~~~~~L~~l 40 (90)
..|.+....||+||..-..-|.-|+..
T Consensus 10 kErEnnk~RERrRRAIaakIfaGLR~~ 36 (150)
T PF05687_consen 10 KERENNKRRERRRRAIAAKIFAGLRAH 36 (150)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677789999996666666666643
No 135
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=38.85 E-value=79 Score=18.26 Aligned_cols=22 Identities=9% Similarity=0.151 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14769 66 MRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 66 L~~~~~~l~~~~~~L~~~~~~L 87 (90)
|.-.+..++.++..++..+..+
T Consensus 48 LKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 48 LKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 136
>KOG2607|consensus
Probab=38.15 E-value=57 Score=25.41 Aligned_cols=39 Identities=31% Similarity=0.557 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 51 SRAQILKKAADY-IQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 51 sK~~iL~~ai~y-Ik~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
.-+.||.+-++| |-.|.....++++++.++.++-..+++
T Consensus 111 EaAQIlvrnvnYEIP~LkKQiaK~qQq~tE~~RKe~d~~k 150 (505)
T KOG2607|consen 111 EAAQILVRNVNYEIPYLKKQIAKVQQQMTELDRKEADIKK 150 (505)
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 457788888999 999999999999999988887666554
No 137
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=37.99 E-value=1.1e+02 Score=24.06 Aligned_cols=22 Identities=14% Similarity=0.407 Sum_probs=10.3
Q ss_pred HHHHHHHhH-HHHHHHHHHHHHh
Q psy14769 17 AHHNALERK-RRDHIKDSFSSLR 38 (90)
Q Consensus 17 ~~hn~~Er~-RR~~i~~~~~~L~ 38 (90)
..+...|.. +...+...|+.|+
T Consensus 67 nqSALteqQ~kasELEKqLaaLr 89 (475)
T PRK13729 67 RQHATTEMQVTAAQMQKQYEEIR 89 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444 4445555555553
No 138
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=37.99 E-value=94 Score=20.08 Aligned_cols=31 Identities=10% Similarity=0.358 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 53 AQILKKAADYIQFMRRKNASHQQDIDDLKRQ 83 (90)
Q Consensus 53 ~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~ 83 (90)
...|....+||+.|+...+.+..++......
T Consensus 54 e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 54 EAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4466667777777777777777666665554
No 139
>PF02186 TFIIE_beta: TFIIE beta subunit core domain; InterPro: IPR003166 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This entry represents the beta subunit of the transcription factor TFIIE.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005673 transcription factor TFIIE complex; PDB: 1D8K_A 1D8J_A.
Probab=37.95 E-value=31 Score=19.45 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy14769 52 RAQILKKAADYIQFM 66 (90)
Q Consensus 52 K~~iL~~ai~yIk~L 66 (90)
+.+.|..||+||+.-
T Consensus 3 ~~tql~~~VeymK~r 17 (65)
T PF02186_consen 3 KFTQLAKAVEYMKKR 17 (65)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhc
Confidence 467899999999975
No 140
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=37.85 E-value=1.2e+02 Score=21.49 Aligned_cols=25 Identities=12% Similarity=0.007 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
|..|+.++.+|+-+++.+..+++.+
T Consensus 63 l~~lq~ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 63 LSDNQSDIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444444444444444444444333
No 141
>PRK02724 hypothetical protein; Provisional
Probab=37.64 E-value=53 Score=20.45 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=28.9
Q ss_pred HHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHH
Q psy14769 31 KDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRK 69 (90)
Q Consensus 31 ~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~ 69 (90)
+++++.|+..+-+-+=-...++..||..|.+-|.+=|+.
T Consensus 44 ~DAWe~LK~~LesK~WIs~~~~i~lLN~~TeiIN~WQe~ 82 (104)
T PRK02724 44 NDAWEQLKTELESKHWITENERVEVLNKATEVINYWQEE 82 (104)
T ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 367788888776543222477899999999999998873
No 142
>PF14992 TMCO5: TMCO5 family
Probab=37.52 E-value=1.6e+02 Score=21.50 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 54 QILKKAADYIQFMRRKNASHQQDIDD 79 (90)
Q Consensus 54 ~iL~~ai~yIk~L~~~~~~l~~~~~~ 79 (90)
.+...++.||+.|++..+.++.+++.
T Consensus 144 ~l~eDq~~~i~klkE~L~rmE~ekE~ 169 (280)
T PF14992_consen 144 QLCEDQANEIKKLKEKLRRMEEEKEM 169 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566888888888888777765554
No 143
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=37.32 E-value=89 Score=18.43 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 64 QFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 64 k~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
..|...+.+|+.+...+..++..+.
T Consensus 3 ~~l~~~~~~L~~~~~~l~~~i~~~~ 27 (83)
T PF07061_consen 3 ESLEAEIQELKEQIEQLEKEISELE 27 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554443
No 144
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=36.46 E-value=93 Score=22.41 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
|..-.....++..++..|+++++.|..
T Consensus 195 i~~~re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 195 IVQFREEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555666666666666666654
No 145
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=36.19 E-value=98 Score=18.58 Aligned_cols=6 Identities=0% Similarity=-0.003 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy14769 69 KNASHQ 74 (90)
Q Consensus 69 ~~~~l~ 74 (90)
.+.+|+
T Consensus 74 ~V~~LE 79 (99)
T PF10046_consen 74 QVTELE 79 (99)
T ss_pred HHHHHH
Confidence 333333
No 146
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=36.19 E-value=80 Score=17.56 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14769 64 QFMRRKNASHQQDIDDLKRQN 84 (90)
Q Consensus 64 k~L~~~~~~l~~~~~~L~~~~ 84 (90)
..|...+..|+.||..++..+
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~ 44 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAI 44 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555544443
No 147
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=35.68 E-value=45 Score=26.16 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14769 69 KNASHQQDIDDLKRQNAI 86 (90)
Q Consensus 69 ~~~~l~~~~~~L~~~~~~ 86 (90)
++++|++++++|++++..
T Consensus 32 kie~L~kql~~Lk~q~~~ 49 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDD 49 (489)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 555555555555555443
No 148
>CHL00163 ycf65 putative ribosomal protein 3; Validated
Probab=35.51 E-value=60 Score=20.05 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHH
Q psy14769 32 DSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRK 69 (90)
Q Consensus 32 ~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~ 69 (90)
++++.|+..+-+-+=-...++..||..|.+-|.+=|+.
T Consensus 40 DAWe~LK~~LesK~WIs~~~~i~lLN~~TeiIN~Wqe~ 77 (99)
T CHL00163 40 DAWELLKLELESKPWISEDERIEILNKTTEIINYWQEN 77 (99)
T ss_pred cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 57778887776543222477899999999999998874
No 149
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=35.32 E-value=70 Score=18.55 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHh
Q psy14769 75 QDIDDLKRQNAILE 88 (90)
Q Consensus 75 ~~~~~L~~~~~~L~ 88 (90)
.+++.|++++..|+
T Consensus 70 d~i~~L~~el~~L~ 83 (84)
T PF13591_consen 70 DRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHhh
Confidence 45555555555554
No 150
>KOG1962|consensus
Probab=35.16 E-value=1e+02 Score=21.58 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 55 ILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 55 iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
=|..|.+....|+...+.+..+.+.|..+.+.|+.
T Consensus 173 ~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 173 KLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555555554
No 151
>PF14645 Chibby: Chibby family
Probab=35.02 E-value=1e+02 Score=19.34 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 62 YIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 62 yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
=...|+++++.|++|...|+-+++-|
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIELL 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557778888888888887777655
No 152
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=34.97 E-value=60 Score=24.54 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy14769 68 RKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 68 ~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+...+|++++..|+.++..|++
T Consensus 42 ~~i~~Lq~QI~~Lq~ei~~l~~ 63 (383)
T PF12097_consen 42 QEISELQKQIQQLQAEINQLEE 63 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555444443
No 153
>PF15370 DUF4598: Domain of unknown function (DUF4598)
Probab=34.72 E-value=89 Score=19.52 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 55 ILKKAADYIQFMRRKNASHQQDIDD 79 (90)
Q Consensus 55 iL~~ai~yIk~L~~~~~~l~~~~~~ 79 (90)
+|.+.-.|+-.|++.+.+|++++..
T Consensus 2 ll~rl~~FLPqm~~ANe~L~~~~aa 26 (112)
T PF15370_consen 2 LLSRLQAFLPQMKAANEKLEKEIAA 26 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6778889999999999999988754
No 154
>PRK00846 hypothetical protein; Provisional
Probab=34.57 E-value=99 Score=18.12 Aligned_cols=25 Identities=8% Similarity=-0.141 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
|..|.+.+.+.+..++.|..++..|
T Consensus 29 Ie~LN~~v~~qq~~I~~L~~ql~~L 53 (77)
T PRK00846 29 LTELSEALADARLTGARNAELIRHL 53 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555544433
No 155
>PRK11530 hypothetical protein; Provisional
Probab=34.49 E-value=93 Score=21.25 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILEAQ 90 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~q 90 (90)
+.+|+..+.++.+++..|..+-..|++|
T Consensus 26 v~ql~~~vs~LNqem~~Lt~qa~aleqQ 53 (183)
T PRK11530 26 VRQMHNSVSTLNQEMTQLTQQAVAIEQQ 53 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888887777776654
No 156
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=33.99 E-value=1e+02 Score=20.53 Aligned_cols=28 Identities=21% Similarity=0.436 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
+=|..|+.+.++.+.+++.|+.+.+.|.
T Consensus 161 ~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 161 EEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555555556666666555554
No 157
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=33.77 E-value=1.3e+02 Score=20.18 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 65 FMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 65 ~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
.|+....+|+.+++.|..++..|
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 158
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=33.27 E-value=1e+02 Score=17.88 Aligned_cols=16 Identities=13% Similarity=0.327 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHh
Q psy14769 73 HQQDIDDLKRQNAILE 88 (90)
Q Consensus 73 l~~~~~~L~~~~~~L~ 88 (90)
+..+++.|++++..|+
T Consensus 70 l~~~~~~l~~~l~~l~ 85 (91)
T cd04766 70 LEEELAELRAELDELR 85 (91)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 159
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=33.11 E-value=55 Score=22.15 Aligned_cols=10 Identities=30% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHhhcCCC
Q psy14769 34 FSSLRDSVPS 43 (90)
Q Consensus 34 ~~~L~~llP~ 43 (90)
=..|+.+++.
T Consensus 85 t~KLr~iv~~ 94 (171)
T PF04799_consen 85 TEKLRLIVSF 94 (171)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3455555543
No 160
>cd07977 TFIIE_beta_winged_helix TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity. Transcription Factor IIE (TFIIE) beta winged-helix (or forkhead) domain is located at the central core region of TFIIE beta. The winged-helix is a form of helix-turn-helix (HTH) domain which typically binds DNA with the 3rd helix. The winged-helix domain is distinguished by the presence of a C-terminal beta-strand hairpin unit (the wing) that packs against the cleft of the tri-helical core. Although most winged-helix domains are multi-member families, TFIIE beta winged-helix domain is typically found as a single orthologous group. TFIIE is one of the six eukaryotic general transcription factors (TFIIA, TFIIB, TFIID, TFIIE, TFIIF and TFIIH) that are required for transcription initiation of protein-coding genes. TFIIE is a heterotetramer consisting of two copies each of alpha and beta subunits. TFIIE beta contains several functional
Probab=32.81 E-value=42 Score=19.35 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=14.8
Q ss_pred ccHHHHHHHHHHHHHHHH
Q psy14769 50 ASRAQILKKAADYIQFMR 67 (90)
Q Consensus 50 ~sK~~iL~~ai~yIk~L~ 67 (90)
....++|..||+||+.-.
T Consensus 5 ~~~~t~l~~aV~ymK~r~ 22 (75)
T cd07977 5 THVFTQLAKIVDYMKKRH 22 (75)
T ss_pred cchhhhHHHHHHHHHhcC
Confidence 456889999999999655
No 161
>KOG2991|consensus
Probab=32.51 E-value=1.3e+02 Score=22.05 Aligned_cols=59 Identities=17% Similarity=0.305 Sum_probs=36.0
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 22 LERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 22 ~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
+-+..-..+++.|+.|-..+-......--...+ |-.||+.+++-+.+|..|++.++.+.
T Consensus 247 mQKs~seElkssq~eL~dfm~eLdedVEgmqsT--------iliLQq~Lketr~~Iq~l~k~~~q~s 305 (330)
T KOG2991|consen 247 MQKSQSEELKSSQEELYDFMEELDEDVEGMQST--------ILILQQKLKETRKEIQRLKKGLEQVS 305 (330)
T ss_pred HHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhh--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666777777766665443211122222 34577888888888888888877764
No 162
>PF03955 Adeno_PIX: Adenovirus hexon-associated protein (IX); InterPro: IPR005641 Hexon (IPR000736 from INTERPRO) is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer, 240 copies of which are present in the capsid, organised so that 12 lie on each of the 20 facets of this structure. The central 9 hexons in a facet are cemented together by 12 copies of protein IX []. Protein IX is not neccessarily required for viral replication, but has been shown to affect several processes including DNA-packaging capacity, thermostability, and the transcriptional activity of several promoters. For more information see [].; GO: 0031423 hexon binding, 0044423 virion part; PDB: 3IYN_T.
Probab=32.39 E-value=1.3e+02 Score=18.94 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 65 FMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 65 ~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
.++..+..+..+++.|.+++..|
T Consensus 87 ~~~~~l~~l~a~Le~l~~~L~~~ 109 (109)
T PF03955_consen 87 ALEDKLTALLAQLEALKQQLAEL 109 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 34667777777777777777654
No 163
>PHA01754 hypothetical protein
Probab=32.25 E-value=1e+02 Score=17.47 Aligned_cols=39 Identities=10% Similarity=0.293 Sum_probs=28.7
Q ss_pred HHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHH
Q psy14769 30 IKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRK 69 (90)
Q Consensus 30 i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~ 69 (90)
+--+++.|.-.+..+.... +-|+.|.+.|.+.|+-+..-
T Consensus 18 LylALdDLamaLATee~Ee-VRkSevfqkA~EViKvvkem 56 (69)
T PHA01754 18 LYLALDDLTMALATEDKEE-VRKSEVFQKALEVVKVVKEM 56 (69)
T ss_pred HHHHHHHHHHHHhhcchHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666665544 88999999999999977653
No 164
>KOG3119|consensus
Probab=32.05 E-value=75 Score=22.70 Aligned_cols=13 Identities=8% Similarity=0.322 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q psy14769 69 KNASHQQDIDDLK 81 (90)
Q Consensus 69 ~~~~l~~~~~~L~ 81 (90)
.+.+|+.++..|+
T Consensus 237 ~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 237 QVEQLKKELATLR 249 (269)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333443333
No 165
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=31.97 E-value=1.4e+02 Score=20.77 Aligned_cols=26 Identities=4% Similarity=0.206 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
|..|+..+..++..+...+.++..++
T Consensus 34 Ie~LK~~i~~~E~~l~~~r~~~~~aK 59 (207)
T PF05546_consen 34 IEKLKKSIEELEDELEAARQEVREAK 59 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777666554
No 166
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=31.93 E-value=95 Score=22.16 Aligned_cols=27 Identities=11% Similarity=0.083 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 55 ILKKAADYIQFMRRKNASHQQDIDDLK 81 (90)
Q Consensus 55 iL~~ai~yIk~L~~~~~~l~~~~~~L~ 81 (90)
.=..|++-|-.|+.++..|+.+|..+-
T Consensus 116 ~~~~AlqKIsALEdELs~LRaQIA~IV 142 (253)
T PF05308_consen 116 ANEAALQKISALEDELSRLRAQIAKIV 142 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335688888889998888888877653
No 167
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=31.66 E-value=69 Score=19.63 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 59 AADYIQFMRRKNASHQQDIDDLKRQ 83 (90)
Q Consensus 59 ai~yIk~L~~~~~~l~~~~~~L~~~ 83 (90)
++..|..|+..+..++.++..++.+
T Consensus 76 c~G~i~~L~~ql~~~~~el~~~~~~ 100 (101)
T PF03195_consen 76 CVGIISQLQQQLQQLQAELALVRAQ 100 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4567778888777777776665543
No 168
>PLN03188 kinesin-12 family protein; Provisional
Probab=31.57 E-value=1.5e+02 Score=26.24 Aligned_cols=57 Identities=23% Similarity=0.396 Sum_probs=39.6
Q ss_pred HhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhC
Q psy14769 23 ERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQ----DIDDLKRQNAILEAQ 90 (90)
Q Consensus 23 Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~----~~~~L~~~~~~L~~q 90 (90)
++-|| |..+|+..+.. .+|+++=..-..||+.|-.++..|+. +..-|+.++..|+.|
T Consensus 1128 ~~hr~--i~egi~dvkka---------aakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~q 1188 (1320)
T PLN03188 1128 ARHRR--IQEGIDDVKKA---------AARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQ 1188 (1320)
T ss_pred HHHHH--HHHHHHHHHHH---------HHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44454 56777776543 45666666667899999999888864 345688888888766
No 169
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=31.49 E-value=1.3e+02 Score=18.50 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 53 AQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 53 ~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
+.-+...-.||..|...+..+...+..+...++..+
T Consensus 60 ~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r 95 (141)
T TIGR02473 60 ALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKR 95 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888888888888888887777766554
No 170
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=31.43 E-value=1.9e+02 Score=20.50 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 51 SRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 51 sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+-.+||.--+..=-...+.+.+|++++..+...+..|+.
T Consensus 76 ~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~ 114 (248)
T PF08172_consen 76 GDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRR 114 (248)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666667777777777777777777654
No 171
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.39 E-value=2.6e+02 Score=22.03 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy14769 70 NASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 70 ~~~l~~~~~~L~~~~~~L~~ 89 (90)
...++++++.|..++..|+.
T Consensus 99 ~~dle~KIkeLEaE~~~Lk~ 118 (475)
T PRK13729 99 RGDDQRRIEKLGQDNAALAE 118 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 33444444445455554443
No 172
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=31.20 E-value=1.2e+02 Score=18.15 Aligned_cols=58 Identities=9% Similarity=0.113 Sum_probs=31.4
Q ss_pred HHHHHHHhhcCCCCCCc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 31 KDSFSSLRDSVPSLQGE-------KVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 31 ~~~~~~L~~llP~~~~~-------~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
.....+|..+-|...-. ...++..+...--+.+..+......+..++..+..+...|+
T Consensus 33 ~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 33 KKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred HHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666655544311 13455555555555556666666666665555555555544
No 173
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=31.17 E-value=1.1e+02 Score=18.71 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=16.2
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 55 ILKKAADYIQ----FMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 55 iL~~ai~yIk----~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
.+..|++|+. .|......+...+..+..+...+
T Consensus 83 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i 119 (126)
T TIGR00293 83 DAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQL 119 (126)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666643 34444444444454554444443
No 174
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=31.11 E-value=2e+02 Score=20.63 Aligned_cols=25 Identities=8% Similarity=0.145 Sum_probs=13.9
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHH
Q psy14769 56 LKKAADYIQ---FMRRKNASHQQDIDDL 80 (90)
Q Consensus 56 L~~ai~yIk---~L~~~~~~l~~~~~~L 80 (90)
.....+|+. .|.+++++|+.++..|
T Consensus 58 ~~~~~~~~~~~~~l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 58 FDGISENLKDVNNLEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444 4557777777665544
No 175
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=31.05 E-value=1.2e+02 Score=17.83 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
+..++.+..+++.+...|.-|...|
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555666666665555544
No 176
>COG3120 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.89 E-value=1.5e+02 Score=19.24 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 53 AQILKKAADYIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 53 ~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
+.+|..||.|+..=-....++..++..|++.+..|
T Consensus 112 g~TLSetI~~li~eae~keky~~qmsslK~dLk~l 146 (149)
T COG3120 112 GKTLSETIVYLIEEAERKEKYANQMSSLKQDLKAL 146 (149)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899998877777788888999999888766
No 177
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=30.87 E-value=1.9e+02 Score=20.20 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhC
Q psy14769 51 SRAQILKKAADYIQFMRRKNASHQQDID-DLKRQNAILEAQ 90 (90)
Q Consensus 51 sK~~iL~~ai~yIk~L~~~~~~l~~~~~-~L~~~~~~L~~q 90 (90)
.|+.-|+.|.--++.--++...++..+. .|.+++..|+.|
T Consensus 3 ekv~~LQ~AL~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~q 43 (205)
T PF12240_consen 3 EKVERLQQALAQLQAACEKREQLERRLRTRLERELESLRAQ 43 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666665555444444444444333 566677776654
No 178
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=30.76 E-value=1.4e+02 Score=18.72 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=27.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 52 RAQILKKAADY-IQFMRRKNASHQQDIDDLKRQNA 85 (90)
Q Consensus 52 K~~iL~~ai~y-Ik~L~~~~~~l~~~~~~L~~~~~ 85 (90)
-..|+..|-+| .+.|.+...+.+.+++..+.+.+
T Consensus 18 A~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~kE 52 (113)
T TIGR01147 18 AAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQRE 52 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888877 89999999999999888776543
No 179
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=30.45 E-value=1.4e+02 Score=18.53 Aligned_cols=25 Identities=8% Similarity=-0.065 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 64 QFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 64 k~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
..++++++.|..+...|.+++..|+
T Consensus 60 ~~~~~e~~~L~~~~~~l~~ei~~L~ 84 (117)
T COG2919 60 AAQQAELEKLSARNTALEAEIKDLK 84 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556666666666666666666554
No 180
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=30.38 E-value=1e+02 Score=19.78 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 67 RRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 67 ~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
..++..|...|+.|..+++.|..
T Consensus 108 ~~dv~~L~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 108 RKDVEALSARIDQLTAQVERLAN 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566677777777777777653
No 181
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=30.17 E-value=2.2e+02 Score=20.73 Aligned_cols=20 Identities=15% Similarity=0.503 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhcCCCC
Q psy14769 25 KRRDHIKDSFSSLRDSVPSL 44 (90)
Q Consensus 25 ~RR~~i~~~~~~L~~llP~~ 44 (90)
.+...|...+..|+.++...
T Consensus 184 ~~~~~L~~e~~~Lk~~~~e~ 203 (325)
T PF08317_consen 184 ERKAELEEELENLKQLVEEI 203 (325)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34556666677777766544
No 182
>PF11279 DUF3080: Protein of unknown function (DUF3080); InterPro: IPR021431 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently this family has no known function.
Probab=29.99 E-value=2.2e+02 Score=20.77 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 28 DHIKDSFSSLRDSVPSLQGEKVASRAQILKKAAD--YIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 28 ~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~--yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
+.++..+... ..-|.|.+.+-..++.||..... ||..+|--...+...-..|..-+..|.
T Consensus 206 ~~~t~~L~~~-~~~~lC~~~~~~~~~~~L~NVF~~~yi~~IQpylA~l~~~~~ql~p~l~~l~ 267 (316)
T PF11279_consen 206 NQATQQLEQR-DNSILCGPGRNTTKARILRNVFQKYYIEQIQPYLAQLDRYYQQLQPLLNQLE 267 (316)
T ss_pred HHHHHHHHcc-cCCCCCCCCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554 55677876666889999999776 788888888888777777666665554
No 183
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=29.92 E-value=85 Score=20.88 Aligned_cols=26 Identities=8% Similarity=0.199 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14769 65 FMRRKNASHQQDIDDLKRQNAILEAQ 90 (90)
Q Consensus 65 ~L~~~~~~l~~~~~~L~~~~~~L~~q 90 (90)
.+.++.++++.+++....+.+.|+.|
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555566666554
No 184
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=29.86 E-value=1.5e+02 Score=18.63 Aligned_cols=9 Identities=22% Similarity=0.482 Sum_probs=5.0
Q ss_pred HHHHHHHHH
Q psy14769 56 LKKAADYIQ 64 (90)
Q Consensus 56 L~~ai~yIk 64 (90)
+..|++|+.
T Consensus 92 ~~eA~~~l~ 100 (140)
T PRK03947 92 LDEAIEILD 100 (140)
T ss_pred HHHHHHHHH
Confidence 556665543
No 185
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=29.70 E-value=1.4e+02 Score=18.46 Aligned_cols=52 Identities=10% Similarity=0.194 Sum_probs=36.8
Q ss_pred HHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 30 IKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKR 82 (90)
Q Consensus 30 i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~ 82 (90)
...+|.+|....|+..+.. .+|..+=..+.+|...|+.-...|..++..|..
T Consensus 22 A~~ai~~Ls~~~~~~~~~~-~~k~~f~~~~~~f~~~L~~V~~~Lr~qI~~L~e 73 (117)
T PF10280_consen 22 AGQAIQELSNPKSPDQDPE-SSKEAFESATSEFFSTLSSVEVELRRQIKYLEE 73 (117)
T ss_dssp HHHHHHHHHHHHTT---TG-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666555422223 678888999999999999988888888877653
No 186
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=29.69 E-value=82 Score=22.89 Aligned_cols=26 Identities=23% Similarity=0.357 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAI 86 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~ 86 (90)
+....|.+++.+++.+++.+..++..
T Consensus 39 ~~~~~lr~e~~~l~~~~~~~~~~~~~ 64 (308)
T PF11382_consen 39 DQFDSLREENDELRAELDALQAQLNA 64 (308)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666555555555543
No 187
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=29.46 E-value=1.3e+02 Score=17.82 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=12.4
Q ss_pred HHHhHHHHHHHHHHHHHhhcCCC
Q psy14769 21 ALERKRRDHIKDSFSSLRDSVPS 43 (90)
Q Consensus 21 ~~Er~RR~~i~~~~~~L~~llP~ 43 (90)
.-|+.-|..+..++..-...+|.
T Consensus 25 ~~E~~~r~aLe~al~~~~~~~~~ 47 (88)
T PF14389_consen 25 QEEQDLRRALEKALGRSSGSLPS 47 (88)
T ss_pred HHHHHHHHHHHHHhCCCCcccCC
Confidence 34566666666666654444433
No 188
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=29.36 E-value=1.3e+02 Score=22.49 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
.+...|.+++++|++++..|+.++..++
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e 84 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYE 84 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788888888888888877666543
No 189
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=28.90 E-value=1.7e+02 Score=19.02 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
.-|+.|+.-+.....++..|+..+..+..
T Consensus 104 ~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~ 132 (146)
T PF08702_consen 104 SNIRVLQNILRSNRQKIQRLEQDIDQQER 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788889888999999999888877654
No 190
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=28.54 E-value=1.7e+02 Score=21.42 Aligned_cols=21 Identities=10% Similarity=0.444 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQ 83 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~ 83 (90)
+..|+.+..++.+++..|..+
T Consensus 52 l~~le~Ee~~l~~eL~~LE~e 72 (314)
T PF04111_consen 52 LEKLEQEEEELLQELEELEKE 72 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333333333
No 191
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=28.44 E-value=2.1e+02 Score=19.90 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 62 YIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 62 yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
|+..|+..+..++.++..|..++..+
T Consensus 71 ~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 71 YNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555443
No 192
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=28.28 E-value=1.4e+02 Score=18.05 Aligned_cols=59 Identities=10% Similarity=0.168 Sum_probs=34.0
Q ss_pred HHHHHHHhhcCCCCC-----Cc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 31 KDSFSSLRDSVPSLQ-----GE--KVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 31 ~~~~~~L~~llP~~~-----~~--~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
...+.+|..+-|... |+ -+.++..++..--+-|.++......+......|...+..++.
T Consensus 37 ~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 37 EKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777666543 11 134555555555555555566666666666666666655543
No 193
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=28.11 E-value=1e+02 Score=16.34 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14769 65 FMRRKNASHQQDIDDLKR 82 (90)
Q Consensus 65 ~L~~~~~~l~~~~~~L~~ 82 (90)
.|.+.+..|+.++..|+.
T Consensus 3 aLrqQv~aL~~qv~~Lq~ 20 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQA 20 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 194
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=28.05 E-value=1.6e+02 Score=18.55 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 62 YIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 62 yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
-|..|++.+..+..+...|+-++..|+
T Consensus 23 el~~lK~~l~~lvEEN~~L~lENe~LR 49 (114)
T COG4467 23 ELGGLKQHLGSLVEENTALRLENEKLR 49 (114)
T ss_pred HHHHHHHHHHHHHHhhHHHHhhHHHHH
Confidence 344444555555555555555555554
No 195
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=28.04 E-value=20 Score=22.30 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
.-+..|+..+..++.++..|+.+++.|+.
T Consensus 13 K~~~~LE~~l~~l~~el~~L~~~l~eLe~ 41 (118)
T PF08286_consen 13 KELSDLESELESLQSELEELKEELEELEE 41 (118)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666654
No 196
>PHA03162 hypothetical protein; Provisional
Probab=27.82 E-value=76 Score=20.64 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14769 64 QFMRRKNASHQQDIDDLKRQN 84 (90)
Q Consensus 64 k~L~~~~~~l~~~~~~L~~~~ 84 (90)
..|..++.+|+-|+..|++.+
T Consensus 16 EeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 16 EDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544
No 197
>PHA03155 hypothetical protein; Provisional
Probab=27.80 E-value=79 Score=20.04 Aligned_cols=21 Identities=10% Similarity=0.129 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14769 64 QFMRRKNASHQQDIDDLKRQN 84 (90)
Q Consensus 64 k~L~~~~~~l~~~~~~L~~~~ 84 (90)
..|..++..|+-|+..|++.+
T Consensus 11 EeLaaeL~kL~~ENK~LKkkl 31 (115)
T PHA03155 11 EELEKELQKLKIENKALKKKL 31 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665554
No 198
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=27.62 E-value=1.7e+02 Score=18.80 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQ 83 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~ 83 (90)
|..|+..+..++.+++.+...
T Consensus 37 I~sL~~K~~~lE~eld~~~~~ 57 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQ 57 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333
No 199
>PRK09343 prefoldin subunit beta; Provisional
Probab=27.54 E-value=1.6e+02 Score=18.35 Aligned_cols=58 Identities=9% Similarity=0.194 Sum_probs=30.1
Q ss_pred HHHHHHHhhcCCCCC-----Cc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 31 KDSFSSLRDSVPSLQ-----GE--KVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 31 ~~~~~~L~~llP~~~-----~~--~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
...+.+|..+-|... |+ -+.++..+...--+-+.++......++.+.+.|+..+..++
T Consensus 41 ~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q 105 (121)
T PRK09343 41 NKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQ 105 (121)
T ss_pred HHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777666543 11 13455555444444444444555555555555555555443
No 200
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=27.47 E-value=2e+02 Score=19.49 Aligned_cols=29 Identities=10% Similarity=0.329 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+||..-+....+++.++..|+.+++..++
T Consensus 146 ~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 146 ELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444445555566666666666665554
No 201
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=27.31 E-value=1.7e+02 Score=18.71 Aligned_cols=10 Identities=10% Similarity=0.099 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q psy14769 62 YIQFMRRKNA 71 (90)
Q Consensus 62 yIk~L~~~~~ 71 (90)
+|+-|+..++
T Consensus 54 rIkMLE~aLk 63 (134)
T PF08232_consen 54 RIKMLEYALK 63 (134)
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=27.25 E-value=1.3e+02 Score=21.28 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
+-.|+..+..++.++..|+-.++.+.
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~ 81 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQ 81 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34566666666666666666666553
No 203
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=27.14 E-value=1.5e+02 Score=22.55 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 54 QILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 54 ~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
.|+.++-..+.+|+..+..++++...|+.++..+.
T Consensus 120 ~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~ 154 (401)
T PF06785_consen 120 EVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQ 154 (401)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 35566666666666666666665555555555443
No 204
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.99 E-value=1.3e+02 Score=20.78 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 66 MRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 66 L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
|+..+..|++++..|++++..|-
T Consensus 190 learv~aLe~eva~L~~rld~ll 212 (215)
T COG3132 190 LEARVEALEQEVAELRARLDSLL 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888888888888888877664
No 205
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.87 E-value=2e+02 Score=20.35 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 66 MRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 66 L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+++.++.+..++.+|+.++..|++
T Consensus 53 qE~ALk~a~~~i~eLe~ri~~lq~ 76 (233)
T COG3416 53 QEQALKKASTQIKELEKRIAILQA 76 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666777777777776654
No 206
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=26.84 E-value=90 Score=19.57 Aligned_cols=18 Identities=39% Similarity=0.436 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy14769 71 ASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 71 ~~l~~~~~~L~~~~~~L~ 88 (90)
.++..+++.|++++..|+
T Consensus 86 ~~l~~rvd~Lerqv~~Le 103 (108)
T COG3937 86 DELTERVDALERQVADLE 103 (108)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555666666665554
No 207
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=26.47 E-value=1.3e+02 Score=18.76 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy14769 68 RKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 68 ~~~~~l~~~~~~L~~~~~~L~ 88 (90)
.++..|...+..|..++..|.
T Consensus 96 ~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 96 EEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 556666677777777776665
No 208
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.38 E-value=2.2e+02 Score=19.59 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14769 67 RRKNASHQQDIDDLKRQNA 85 (90)
Q Consensus 67 ~~~~~~l~~~~~~L~~~~~ 85 (90)
.+++..++.+++.|..++.
T Consensus 145 ~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 145 KNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 209
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=26.19 E-value=1.5e+02 Score=18.16 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 64 QFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 64 k~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
..|+.....+...+..+..++..+
T Consensus 97 ~~l~~~~~~l~~~l~~l~~~~~~~ 120 (129)
T cd00584 97 EELTKQIEKLQKELAKLKDQINTL 120 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555444443
No 210
>PF07996 T4SS: Type IV secretion system proteins; InterPro: IPR014158 This entry contains VirB5, a protein that is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation []. VirB5 is homologous to the IncN (N-type) conjugation system protein TraC [] as well as the P-type protein TrbJ and the F-type protein TraE [].; PDB: 1R8I_A.
Probab=26.19 E-value=1.3e+02 Score=19.80 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 56 LKKAADYIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 56 L~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
+..++.-|..+......+.++++.++.....+
T Consensus 14 ~~~~~~q~~~~~~q~~q~~~Ql~~~k~q~~s~ 45 (195)
T PF07996_consen 14 IAQAAQQLAQWKQQLEQLKQQLQQAKQQYNSL 45 (195)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666666655543
No 211
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=26.15 E-value=2e+02 Score=22.93 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 62 YIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 62 yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
.+..+.++..++.+++.+|+.+...|+.
T Consensus 94 ~~~~~~~~i~~l~~~~~~L~~~~~~l~~ 121 (646)
T PRK05771 94 ELEKIEKEIKELEEEISELENEIKELEQ 121 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666666666665553
No 212
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=25.94 E-value=1.8e+02 Score=20.17 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 56 LKKAADYIQFMRRKNASHQQDIDDLKR 82 (90)
Q Consensus 56 L~~ai~yIk~L~~~~~~l~~~~~~L~~ 82 (90)
|+....-|+.|++.++.|+.+..+|+-
T Consensus 50 lQ~hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 50 LQQHLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666655555543
No 213
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=25.88 E-value=1.7e+02 Score=21.82 Aligned_cols=28 Identities=18% Similarity=0.415 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
+.+.-|+.++++|++++..+..+++.++
T Consensus 175 D~v~LLqkk~~~l~~~l~~~~~eL~~~~ 202 (323)
T PF08537_consen 175 DRVILLQKKIDELEERLNDLEKELEITK 202 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666665544
No 214
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=25.80 E-value=1.8e+02 Score=21.54 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhcCC
Q psy14769 28 DHIKDSFSSLRDSVP 42 (90)
Q Consensus 28 ~~i~~~~~~L~~llP 42 (90)
..|+..|.+|..+|-
T Consensus 185 k~ik~~F~~l~~cL~ 199 (302)
T PF07139_consen 185 KKIKQTFAELQSCLM 199 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457788999988874
No 215
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=25.64 E-value=2e+02 Score=21.17 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 56 LKKAADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 56 L~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
|+.-==+|++|+.++++-+..+..-..++..|+
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dRetEI~eLk 95 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDRETEIDELK 95 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 444444566666666555544444333444443
No 216
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=25.54 E-value=1.4e+02 Score=18.69 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14769 67 RRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 67 ~~~~~~l~~~~~~L~~~~~~L 87 (90)
+..+..+...++.|..++..|
T Consensus 104 e~e~~~~~~r~~dL~~QN~lL 124 (132)
T PF07926_consen 104 EKELSELEQRIEDLNEQNKLL 124 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444433
No 217
>PF13713 BRX_N: Transcription factor BRX N-terminal domain
Probab=25.52 E-value=1.1e+02 Score=15.63 Aligned_cols=20 Identities=10% Similarity=0.169 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14769 58 KAADYIQFMRRKNASHQQDI 77 (90)
Q Consensus 58 ~ai~yIk~L~~~~~~l~~~~ 77 (90)
.|-++|+.|..+++.+-..+
T Consensus 9 aaKe~IKsLt~QlK~maekl 28 (39)
T PF13713_consen 9 AAKEVIKSLTAQLKDMAEKL 28 (39)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 46788999999888776543
No 218
>KOG0837|consensus
Probab=25.51 E-value=98 Score=22.52 Aligned_cols=10 Identities=10% Similarity=0.126 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q psy14769 26 RRDHIKDSFS 35 (90)
Q Consensus 26 RR~~i~~~~~ 35 (90)
+|..+..||.
T Consensus 214 nreaa~Kcr~ 223 (279)
T KOG0837|consen 214 NREAASKCRK 223 (279)
T ss_pred hHHHHHHHHH
Confidence 3444444444
No 219
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=25.43 E-value=2.6e+02 Score=19.96 Aligned_cols=57 Identities=19% Similarity=0.215 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCcc-----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 27 RDHIKDSFSSLRDSVPSLQGEK-----------VASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAI 86 (90)
Q Consensus 27 R~~i~~~~~~L~~llP~~~~~~-----------k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~ 86 (90)
|..|...|..|+.+=....+.. -+.-.+.|..+| --++..++.+..+|.+|+.+++.
T Consensus 6 ~qLI~~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~v---lvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 6 RQLIDDLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTV---LVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678889999988766543210 122233333222 22345555566666666666544
No 220
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=25.23 E-value=1.5e+02 Score=17.30 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 54 QILKKAADYIQFMRRKNASHQQDIDDL 80 (90)
Q Consensus 54 ~iL~~ai~yIk~L~~~~~~l~~~~~~L 80 (90)
.||..-.+=|+.+-.++..++..++.+
T Consensus 4 NILl~Ir~dIk~vd~KVdaLq~~V~~l 30 (75)
T PF05531_consen 4 NILLVIRQDIKAVDDKVDALQTQVDDL 30 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333
No 221
>PF03285 Paralemmin: Paralemmin; InterPro: IPR004965 Paralemmin was identified in the chicken lens as a protein with a molecular weight of 65 kDa (isoform 1) and a splice variant of 60 kDa (isoform 2). Isoform 2 is predominant during infancy and levels of isoform 1 increase with age. Paralemmin is localised to the plasma membrane of fibre cells, and was not detected in the annular pad cells. Its localisation to the short side of the fibre cell and the sites of fibre cell interlocking suggests that paralemmin may play a role in the development of such interdigitating processes []. Palmitoylation is important for localising these proteins to the filopodia of dendritic cells where they have been implicated in the regulation of membrane dynamics and process outgrowth. ; GO: 0008360 regulation of cell shape, 0016020 membrane
Probab=25.16 E-value=1.2e+02 Score=22.19 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 67 RRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 67 ~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+++.+.|+.-|.+|.++++.|+.
T Consensus 9 EqKtR~LEesI~RLEkEIe~LE~ 31 (278)
T PF03285_consen 9 EQKTRSLEESIHRLEKEIEALEN 31 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 44455566666666666666653
No 222
>PHA02557 22 prohead core protein; Provisional
Probab=25.03 E-value=2.1e+02 Score=20.82 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 59 AADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 59 ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
.++.|-.|...+.+.+.++..|..++..|+.
T Consensus 139 ~vdvV~em~~~L~E~e~~~~~l~~en~~l~e 169 (271)
T PHA02557 139 KVDVVAEMEEELDEMEEELNELFEENVALEE 169 (271)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777677666666666653
No 223
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=24.99 E-value=2.8e+02 Score=22.69 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
|+.+...++.|+.++..|+.++.+|
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~ 448 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEEL 448 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 224
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=24.86 E-value=1.8e+02 Score=17.94 Aligned_cols=35 Identities=9% Similarity=0.226 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q psy14769 53 AQILKKAADYIQFMRRK----NASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 53 ~~iL~~ai~yIk~L~~~----~~~l~~~~~~L~~~~~~L 87 (90)
.-+++-+|+|+-+.|+. +..++.++..+..+.+.|
T Consensus 61 frLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l 99 (118)
T PF13815_consen 61 FRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKL 99 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889997665543 333444444444444333
No 225
>PRK09039 hypothetical protein; Validated
Probab=24.84 E-value=2.6e+02 Score=20.71 Aligned_cols=23 Identities=9% Similarity=0.276 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNA 85 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~ 85 (90)
|..|++++..|+.++..|...+.
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~ 161 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALD 161 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333333
No 226
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=24.74 E-value=1.6e+02 Score=17.32 Aligned_cols=15 Identities=33% Similarity=0.685 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhhcC
Q psy14769 27 RDHIKDSFSSLRDSV 41 (90)
Q Consensus 27 R~~i~~~~~~L~~ll 41 (90)
+..|...|+.|..+|
T Consensus 41 ~~~I~~~f~~l~~~L 55 (127)
T smart00502 41 EAQIKAAFDELRNAL 55 (127)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555554
No 227
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=24.69 E-value=61 Score=21.66 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 53 AQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 53 ~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
+.+......|+..|......+..++..|.+++.-|+
T Consensus 7 aq~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr 42 (181)
T PF09311_consen 7 AQVMRALQQHLQSLEAERQKLRAQVRRLCQENDWLR 42 (181)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHT-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566678888888888888888888888877665
No 228
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=24.58 E-value=1.9e+02 Score=18.17 Aligned_cols=36 Identities=6% Similarity=0.130 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 53 AQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 53 ~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
+..|...-.||..|...+......+..+..+++..+
T Consensus 63 ~~~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~r 98 (147)
T PRK05689 63 SSWWINYQQFLQQLEKAITQQRQQLTQWTQKVDNAR 98 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777788899999988888888888877776544
No 229
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=24.29 E-value=2.3e+02 Score=19.07 Aligned_cols=25 Identities=12% Similarity=0.328 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
+..|.....+++..+..++.+...|
T Consensus 114 ~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 114 VEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333
No 230
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.25 E-value=1.6e+02 Score=17.16 Aligned_cols=52 Identities=12% Similarity=0.240 Sum_probs=34.2
Q ss_pred HHHHHHHhhcCCCCCCcc-cccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 31 KDSFSSLRDSVPSLQGEK-VASR-AQILKKAADYIQFMRRKNASHQQDIDDLKR 82 (90)
Q Consensus 31 ~~~~~~L~~llP~~~~~~-k~sK-~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~ 82 (90)
-.+|..|..+|-...+.. .+.. ......++.++++.+..+...+.++..|-.
T Consensus 13 Eea~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k~C~~~L~~ae~ki~~l~~ 66 (80)
T PRK00977 13 EEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKLQQAEQRVEKLLD 66 (80)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666664332111 1222 456688999999999999999988887743
No 231
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=24.12 E-value=1.8e+02 Score=21.56 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
-.+..|+++.+.|+.++..|+.+...|.
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677777777777777776666654
No 232
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=24.09 E-value=2.1e+02 Score=22.17 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy14769 70 NASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 70 ~~~l~~~~~~L~~~~~~L~ 88 (90)
...|+.++..+.+++..|+
T Consensus 146 i~~Le~e~~~i~~EI~~l~ 164 (478)
T PF11855_consen 146 IAELEREIAEIDAEIDRLE 164 (478)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555443
No 233
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=24.04 E-value=1.9e+02 Score=18.05 Aligned_cols=10 Identities=40% Similarity=0.375 Sum_probs=5.6
Q ss_pred HHHHHHHHHh
Q psy14769 15 KRAHHNALER 24 (90)
Q Consensus 15 ~R~~hn~~Er 24 (90)
-+..|-..|.
T Consensus 10 l~~~~~aL~g 19 (106)
T PF12443_consen 10 LHAAQEALEG 19 (106)
T ss_pred HHHHHHHhhh
Confidence 4555655555
No 234
>PF15459 RRP14: 60S ribosome biogenesis protein Rrp14
Probab=23.91 E-value=57 Score=18.34 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=12.3
Q ss_pred HHHHHHHhhcCCCC
Q psy14769 31 KDSFSSLRDSVPSL 44 (90)
Q Consensus 31 ~~~~~~L~~llP~~ 44 (90)
+..|+.|-++||.-
T Consensus 8 ~~~Fd~Ll~LIPAk 21 (64)
T PF15459_consen 8 SSFFDGLLSLIPAK 21 (64)
T ss_pred HHHHHHHHHhCChH
Confidence 67999999999964
No 235
>KOG4674|consensus
Probab=23.89 E-value=2.9e+02 Score=25.55 Aligned_cols=58 Identities=22% Similarity=0.365 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 29 HIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 29 ~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
.+.+.|+.+...+|...+.. +..+ +..-.+.|.+|..+...+.-+++-++.++..|++
T Consensus 1124 lLh~qie~~s~~~~~~n~S~-~~~g--~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~q 1181 (1822)
T KOG4674|consen 1124 LLHDQFEELSQQSAVSNLSA-MLLG--LSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQ 1181 (1822)
T ss_pred HHHHHHHHHhhhhhhccccc-cccc--hHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHH
Confidence 35678999888888533333 3333 6666677777777777777777766666666654
No 236
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=23.74 E-value=2.8e+02 Score=22.23 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=19.3
Q ss_pred ccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 50 ASRAQILKKAADYIQ----FMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 50 ~sK~~iL~~ai~yIk----~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
.+|+.+|+.-++.+. .|...+..|+.++..|+.++..|
T Consensus 135 ~~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l 176 (546)
T PF07888_consen 135 TTKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERL 176 (546)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777776665542 23333444444444444444444
No 237
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=23.73 E-value=1.9e+02 Score=17.79 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=12.9
Q ss_pred HHHHHHH-HHHHHHHHHHHH----HHHHHHHHh
Q psy14769 61 DYIQFMR-RKNASHQQDIDD----LKRQNAILE 88 (90)
Q Consensus 61 ~yIk~L~-~~~~~l~~~~~~----L~~~~~~L~ 88 (90)
.||+..+ +.+..|+.++.. -++++..|+
T Consensus 64 ~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le 96 (100)
T PF04568_consen 64 QYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELE 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555544 233444433333 555555554
No 238
>PRK05097 Ter macrodomain organizer matS-binding protein; Provisional
Probab=23.70 E-value=2.3e+02 Score=18.73 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 53 AQILKKAADYIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 53 ~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
..+|..||.|+-.=-...+.+..++..|+..+..|
T Consensus 112 ~~TLSetI~~li~eae~ke~y~~qms~lK~dL~~l 146 (150)
T PRK05097 112 GKTLSETIVQLIEDAERKEKYANQMSSLKQDLKAL 146 (150)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899997766666777888888888887765
No 239
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=23.40 E-value=2.4e+02 Score=19.09 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
++|..|+..+..+..++..|..++...
T Consensus 111 ~e~~kl~~~~e~L~~e~~~L~~~~~~~ 137 (170)
T PRK13923 111 EQIGKLQEEEEKLSWENQTLKQELAIT 137 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888777766544
No 240
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.38 E-value=2.4e+02 Score=20.63 Aligned_cols=27 Identities=11% Similarity=0.305 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
+-+..|+.+..++..++..|..+...|
T Consensus 64 ~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 64 QELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555544444
No 241
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.98 E-value=2.5e+02 Score=18.94 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhhcCC
Q psy14769 26 RRDHIKDSFSSLRDSVP 42 (90)
Q Consensus 26 RR~~i~~~~~~L~~llP 42 (90)
|....+.||++|-.=|.
T Consensus 60 r~~ly~~~F~ELIRQVT 76 (189)
T PF10211_consen 60 REELYSQCFDELIRQVT 76 (189)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56667778887755543
No 242
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=22.84 E-value=1.4e+02 Score=15.89 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=17.3
Q ss_pred HHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 33 SFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQ 74 (90)
Q Consensus 33 ~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~ 74 (90)
.+.+++.++....++. .+...+....-..+..+.+....+.
T Consensus 16 sL~eI~~~l~l~~~~~-~~~~~~~~~l~~~~~~i~~~i~~L~ 56 (65)
T PF09278_consen 16 SLEEIRELLELYDQGD-PPCADRRALLEEKLEEIEEQIAELQ 56 (65)
T ss_dssp -HHHHHHHHHHCCSHC-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555552221122 3344444444444444444444443
No 243
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=22.81 E-value=1.5e+02 Score=16.38 Aligned_cols=24 Identities=4% Similarity=0.099 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAI 86 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~ 86 (90)
+..|++++...+++....+.+...
T Consensus 34 La~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 34 LAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544444443
No 244
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=22.58 E-value=1.6e+02 Score=16.54 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=34.0
Q ss_pred HHHHHHhhcCCCCCCcc-cccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 32 DSFSSLRDSVPSLQGEK-VASR-AQILKKAADYIQFMRRKNASHQQDIDDLKR 82 (90)
Q Consensus 32 ~~~~~L~~llP~~~~~~-k~sK-~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~ 82 (90)
.+|..|..+|-...... .+.. ......++.++++.+......+.++..|..
T Consensus 5 e~l~~Le~Iv~~LE~~~l~Leesl~lyeeG~~L~k~c~~~L~~ae~kv~~l~~ 57 (67)
T TIGR01280 5 EALSELEQIVQKLESGDLALEEALNLFERGMALARRCEKKLAQAEQRVRKLLK 57 (67)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666664332111 1222 456688999999999999999988887754
No 245
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.55 E-value=1.8e+02 Score=17.22 Aligned_cols=19 Identities=11% Similarity=0.391 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14769 65 FMRRKNASHQQDIDDLKRQ 83 (90)
Q Consensus 65 ~L~~~~~~l~~~~~~L~~~ 83 (90)
.|+.....+..+...|+.+
T Consensus 79 ~l~~ke~~l~~en~~L~~~ 97 (100)
T PF01486_consen 79 ELKKKERELEEENNQLRQK 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 246
>PRK15396 murein lipoprotein; Provisional
Probab=22.51 E-value=1.8e+02 Score=17.07 Aligned_cols=22 Identities=9% Similarity=0.142 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14769 65 FMRRKNASHQQDIDDLKRQNAI 86 (90)
Q Consensus 65 ~L~~~~~~l~~~~~~L~~~~~~ 86 (90)
.|..++..|..+++.+...+..
T Consensus 29 ~LssqV~~L~~kvdql~~dv~~ 50 (78)
T PRK15396 29 QLSSDVQTLNAKVDQLSNDVNA 50 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 247
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=22.50 E-value=2.2e+02 Score=18.13 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14769 64 QFMRRKNASHQQDIDDLKRQN 84 (90)
Q Consensus 64 k~L~~~~~~l~~~~~~L~~~~ 84 (90)
..|..++.+|+-|+..|++.+
T Consensus 6 EeLaaeL~kLqmENk~LKkkl 26 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKL 26 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544
No 248
>KOG3436|consensus
Probab=22.45 E-value=1.4e+02 Score=19.07 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy14769 69 KNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 69 ~~~~l~~~~~~L~~~~~~L~~ 89 (90)
..++|..++.+|+.++..|+.
T Consensus 13 ~ke~L~~ql~dLK~ELa~LRv 33 (123)
T KOG3436|consen 13 SKEQLLKQLDDLKVELAQLRV 33 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346666777777777777764
No 249
>KOG0869|consensus
Probab=22.36 E-value=2.6e+02 Score=18.87 Aligned_cols=56 Identities=11% Similarity=0.202 Sum_probs=42.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHH
Q psy14769 17 AHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNAS 72 (90)
Q Consensus 17 ~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~ 72 (90)
..-+..|+-|=--|..-..-.+..||....-.|-.|-.+-.-+-+||-+..-+..+
T Consensus 22 ~~~~~reqDr~LPIANV~RIMK~~lP~naKIsKDAKE~vQECVSEfISFvT~EAse 77 (168)
T KOG0869|consen 22 SSLSLREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASE 77 (168)
T ss_pred cccccchhhhhccHHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33456788887777777777888899886545677888888888999998876544
No 250
>PRK14011 prefoldin subunit alpha; Provisional
Probab=22.31 E-value=2.3e+02 Score=18.39 Aligned_cols=13 Identities=15% Similarity=0.141 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhhc
Q psy14769 28 DHIKDSFSSLRDS 40 (90)
Q Consensus 28 ~~i~~~~~~L~~l 40 (90)
..+..+++.|..+
T Consensus 34 ~e~~~~ie~L~~l 46 (144)
T PRK14011 34 MELLKSIESMEGL 46 (144)
T ss_pred HHHHHHHHHHHcc
Confidence 3446666777654
No 251
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.16 E-value=1.8e+02 Score=16.92 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=31.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 49 VASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 49 k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
.+.++.|....-+.+..|......++.+++.|......+..
T Consensus 50 ~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~ 90 (106)
T PF01920_consen 50 SVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEK 90 (106)
T ss_dssp EETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666678888888888888888888888777653
No 252
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=22.11 E-value=1.1e+02 Score=23.96 Aligned_cols=18 Identities=6% Similarity=0.130 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14769 60 ADYIQFMRRKNASHQQDI 77 (90)
Q Consensus 60 i~yIk~L~~~~~~l~~~~ 77 (90)
...+..|++++.+|+.++
T Consensus 31 ~~ql~aLq~~v~eL~~~l 48 (514)
T PF11336_consen 31 QAQLQALQDQVNELRAKL 48 (514)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666666776666554
No 253
>KOG4571|consensus
Probab=22.07 E-value=2e+02 Score=21.15 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 59 AADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 59 ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
|.-|=++=..+-+.+.-+++.|.+++++|+-
T Consensus 239 AtRYRqKkRae~E~l~ge~~~Le~rN~~LK~ 269 (294)
T KOG4571|consen 239 ATRYRQKKRAEKEALLGELEGLEKRNEELKD 269 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566555555555555566666666666553
No 254
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=22.02 E-value=2.3e+02 Score=23.46 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14769 54 QILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90 (90)
Q Consensus 54 ~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~q 90 (90)
.-|++.|-+++.-|=+-..+++++..|..+++.|..|
T Consensus 107 islQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~q 143 (717)
T PF09730_consen 107 ISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQ 143 (717)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666666666666666666543
No 255
>KOG4005|consensus
Probab=21.95 E-value=2.1e+02 Score=20.66 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy14769 69 KNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 69 ~~~~l~~~~~~L~~~~~~L~~ 89 (90)
++.++..+++.+++++..|++
T Consensus 126 ~n~el~~~le~~~~~l~~~~~ 146 (292)
T KOG4005|consen 126 KNHELDSELELLRQELAELKQ 146 (292)
T ss_pred hhHHHHHHHHHHHHHHHhhHH
Confidence 344444555555555554443
No 256
>PF14802 TMEM192: TMEM192 family
Probab=21.91 E-value=2.2e+02 Score=20.11 Aligned_cols=31 Identities=32% Similarity=0.508 Sum_probs=26.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 50 ASRAQILKKAADYIQFMRRKNASHQQDIDDL 80 (90)
Q Consensus 50 ~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L 80 (90)
.+-..+|++=.|-|++|++.+..|.+++-.|
T Consensus 205 ~~~eellEkQadlI~yLk~hn~~L~~ril~l 235 (236)
T PF14802_consen 205 SSLEELLEKQADLIRYLKEHNARLSRRILAL 235 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567799999999999999999998887654
No 257
>PF15058 Speriolin_N: Speriolin N terminus
Probab=21.78 E-value=2.3e+02 Score=19.71 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 62 YIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 62 yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
.|..|-.++++|+.++. |-+|+++|+
T Consensus 13 qierLv~ENeeLKKlVr-LirEN~eLk 38 (200)
T PF15058_consen 13 QIERLVRENEELKKLVR-LIRENHELK 38 (200)
T ss_pred HHHHHHhhhHHHHHHHH-HHHHHHHHH
Confidence 35566666666665554 444555554
No 258
>PF14282 FlxA: FlxA-like protein
Probab=21.75 E-value=1.6e+02 Score=17.94 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQ 83 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~ 83 (90)
+..|+..+..|+.++..|..+
T Consensus 53 ~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 53 IQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 259
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.67 E-value=2e+02 Score=17.49 Aligned_cols=52 Identities=10% Similarity=0.193 Sum_probs=34.9
Q ss_pred HHHHHHHhhcCCCCCCcc-ccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 31 KDSFSSLRDSVPSLQGEK-VAS-RAQILKKAADYIQFMRRKNASHQQDIDDLKR 82 (90)
Q Consensus 31 ~~~~~~L~~llP~~~~~~-k~s-K~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~ 82 (90)
-..+..|..+|-...+.. .+. =......++..|+..+..+...+.++..|-.
T Consensus 11 Eeal~~LEeIV~~LEsgdl~LEesl~lyeeGv~L~k~C~~~L~~AE~kV~~L~~ 64 (95)
T PRK14069 11 EDALRELEQIAEKLERQDFSLEESLKAYERGMELKKICSGILDDAEGKIEALTK 64 (95)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666664332111 122 2456788999999999999999999887754
No 260
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=21.47 E-value=2e+02 Score=20.90 Aligned_cols=11 Identities=18% Similarity=0.498 Sum_probs=4.4
Q ss_pred HHHHHhhcCCC
Q psy14769 33 SFSSLRDSVPS 43 (90)
Q Consensus 33 ~~~~L~~llP~ 43 (90)
....+..++|.
T Consensus 171 ~~~~l~~~~~~ 181 (325)
T PF08317_consen 171 QLEQLDELLPK 181 (325)
T ss_pred HHHHHHHHHHH
Confidence 33334444443
No 261
>KOG2264|consensus
Probab=21.39 E-value=2e+02 Score=23.62 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 67 RRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 67 ~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
|.+...|+-++++.+..+++|.+
T Consensus 127 q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 127 QLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHh
Confidence 33444444455555555555443
No 262
>COG5570 Uncharacterized small protein [Function unknown]
Probab=21.29 E-value=1.6e+02 Score=16.15 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKR 82 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~ 82 (90)
|..|+...=.+..+++.|+.
T Consensus 35 i~eLKRrKL~lKeeIEkLka 54 (57)
T COG5570 35 IRELKRRKLRLKEEIEKLKA 54 (57)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45555555455555555443
No 263
>KOG3335|consensus
Probab=21.21 E-value=2.8e+02 Score=18.95 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
..|..|+..+..|..+++++.+....|
T Consensus 106 ~e~~elr~~~~~l~~~i~~~~~~~~~L 132 (181)
T KOG3335|consen 106 QEIMELRLKVEKLENAIAELTKFFSQL 132 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666655
No 264
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.18 E-value=1.2e+02 Score=21.84 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLK 81 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~ 81 (90)
|..|++.+..++-++++|.
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~ 76 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELR 76 (262)
T ss_pred cHHHHHHHHHHHhhHHHHH
Confidence 4445555555555555444
No 265
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=21.10 E-value=1.9e+02 Score=16.96 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14769 64 QFMRRKNASHQQDIDDLKR 82 (90)
Q Consensus 64 k~L~~~~~~l~~~~~~L~~ 82 (90)
+.|...+...+.+++.|..
T Consensus 8 k~L~~kL~~K~eEI~rLn~ 26 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNI 26 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 266
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=20.78 E-value=1.1e+02 Score=13.87 Aligned_cols=16 Identities=31% Similarity=0.349 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14769 71 ASHQQDIDDLKRQNAI 86 (90)
Q Consensus 71 ~~l~~~~~~L~~~~~~ 86 (90)
..++..|..|.+++..
T Consensus 4 ~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 4 NRLRNRISDLERQLSE 19 (23)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555566555544
No 267
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=20.75 E-value=3e+02 Score=19.12 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 53 AQILKKAADYIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 53 ~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
-..|...++=+..+...+..++++++.|.+++...
T Consensus 29 deFLD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~ 63 (212)
T COG3599 29 DEFLDDVIDDYEQLLDENEDLEDEIDELKEELKEA 63 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666666677788888888888888887654
No 268
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=20.28 E-value=2.2e+02 Score=17.28 Aligned_cols=16 Identities=0% Similarity=0.081 Sum_probs=7.1
Q ss_pred HHHHHHHHHhhcCCCC
Q psy14769 29 HIKDSFSSLRDSVPSL 44 (90)
Q Consensus 29 ~i~~~~~~L~~llP~~ 44 (90)
.|...+..+...|-.+
T Consensus 43 ~l~~~~~~f~~flken 58 (126)
T PF13863_consen 43 ELEEDVIKFDKFLKEN 58 (126)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444444444333
No 269
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=20.01 E-value=3.6e+02 Score=19.72 Aligned_cols=49 Identities=10% Similarity=0.150 Sum_probs=25.2
Q ss_pred HHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 30 IKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKR 82 (90)
Q Consensus 30 i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~ 82 (90)
|......|...||...... .+ -...++..++.+-.++..+..+-..+..
T Consensus 164 Ls~~~~~l~~~lPss~~~~-~~---~~~~~v~~Lr~~l~~l~~lk~eR~~~~~ 212 (339)
T cd09235 164 LSKPEEELANAIPSASPAK-TL---QGSEAVQELRQLMEQVETIKAEREVIES 212 (339)
T ss_pred HcCCHHHHHHhCCCCCCCC-Cc---chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566777888763222 21 2333445555555555555555554433
Done!