Query psy14769
Match_columns 90
No_of_seqs 123 out of 1098
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 20:08:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14769.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14769hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nkp_A C-MYC, MYC proto-oncoge 99.9 1.1E-24 3.8E-29 131.2 10.3 79 11-89 2-80 (88)
2 1nlw_A MAD protein, MAX dimeri 99.9 4.5E-24 1.6E-28 126.5 9.9 76 15-90 1-76 (80)
3 1nkp_B MAX protein, MYC proto- 99.9 1.1E-23 3.6E-28 125.5 9.6 75 15-90 2-76 (83)
4 1hlo_A Protein (transcription 99.9 1.9E-23 6.5E-28 123.7 7.2 74 10-84 7-80 (80)
5 1am9_A Srebp-1A, protein (ster 99.9 6.8E-22 2.3E-26 117.5 10.6 75 12-88 3-77 (82)
6 4ati_A MITF, microphthalmia-as 99.8 3.6E-21 1.2E-25 121.3 7.9 85 5-89 17-112 (118)
7 4h10_B Circadian locomoter out 99.8 2.5E-19 8.5E-24 103.8 8.4 63 9-73 2-64 (71)
8 3u5v_A Protein MAX, transcript 99.8 5.1E-20 1.8E-24 108.0 3.5 62 13-74 3-65 (76)
9 2ql2_B Neurod1, neurogenic dif 99.8 2.8E-18 9.5E-23 96.5 7.1 56 15-70 2-57 (60)
10 1an4_A Protein (upstream stimu 99.7 1E-19 3.5E-24 103.7 -0.4 57 14-70 4-63 (65)
11 1mdy_A Protein (MYOD BHLH doma 99.7 1.4E-17 4.8E-22 95.7 8.4 59 11-70 8-66 (68)
12 1a0a_A BHLH, protein (phosphat 99.7 3.2E-19 1.1E-23 101.3 1.2 56 15-70 2-61 (63)
13 4h10_A ARYL hydrocarbon recept 99.7 2.9E-17 9.9E-22 95.6 5.3 57 12-68 6-63 (73)
14 2lfh_A DNA-binding protein inh 99.5 5E-15 1.7E-19 84.6 3.1 49 20-68 19-67 (68)
15 4ath_A MITF, microphthalmia-as 99.5 1.1E-13 3.7E-18 81.9 8.3 63 27-89 4-77 (83)
16 4aya_A DNA-binding protein inh 99.3 3.4E-12 1.2E-16 77.5 6.8 57 16-72 25-82 (97)
17 4f3l_A Mclock, circadian locom 99.3 1.9E-12 6.4E-17 93.1 6.1 60 8-69 5-64 (361)
18 4f3l_B BMAL1B; BHLH, PAS, circ 99.3 2.3E-12 7.8E-17 93.6 4.6 59 10-68 8-67 (387)
19 1dh3_A Transcription factor CR 93.8 0.18 6.3E-06 26.9 5.0 29 61-89 22-50 (55)
20 3ra3_B P2F; coiled coil domain 93.4 0.12 4.2E-06 23.4 3.1 27 63-89 2-28 (28)
21 3muj_A Transcription factor CO 93.4 0.19 6.5E-06 31.9 5.2 37 30-66 96-133 (138)
22 2dgc_A Protein (GCN4); basic d 93.3 0.35 1.2E-05 26.5 5.6 33 58-90 27-59 (63)
23 2yy0_A C-MYC-binding protein; 93.1 0.065 2.2E-06 28.6 2.4 26 64-89 22-47 (53)
24 1gd2_E Transcription factor PA 92.5 0.21 7.2E-06 28.1 4.1 28 61-88 29-56 (70)
25 2jee_A YIIU; FTSZ, septum, coi 92.0 0.6 2.1E-05 27.0 5.6 31 56-86 15-45 (81)
26 2wt7_A Proto-oncogene protein 91.7 0.49 1.7E-05 25.8 4.9 29 60-88 22-50 (63)
27 1jnm_A Proto-oncogene C-JUN; B 91.6 0.51 1.8E-05 25.5 4.9 29 60-88 21-49 (62)
28 2oxj_A Hybrid alpha/beta pepti 91.4 0.64 2.2E-05 22.4 4.4 27 63-89 3-29 (34)
29 1kd8_B GABH BLL, GCN4 acid bas 91.2 0.66 2.3E-05 22.7 4.4 26 63-88 3-28 (36)
30 1a93_B MAX protein, coiled coi 91.1 0.23 7.9E-06 24.2 2.7 26 65-90 4-29 (34)
31 3m48_A General control protein 90.8 0.43 1.5E-05 22.9 3.5 26 64-89 3-28 (33)
32 2yy0_A C-MYC-binding protein; 90.7 0.42 1.4E-05 25.4 3.9 21 69-89 20-40 (53)
33 1t2k_D Cyclic-AMP-dependent tr 90.7 0.71 2.4E-05 24.8 4.9 27 61-87 22-48 (61)
34 3c3g_A Alpha/beta peptide with 89.9 0.92 3.1E-05 21.7 4.4 26 63-88 2-27 (33)
35 2oqq_A Transcription factor HY 89.8 0.94 3.2E-05 22.9 4.4 27 63-89 12-38 (42)
36 1kd8_A GABH AIV, GCN4 acid bas 89.5 0.69 2.4E-05 22.6 3.7 26 63-88 3-28 (36)
37 2oqq_A Transcription factor HY 89.4 1.2 4E-05 22.5 4.6 29 61-89 3-31 (42)
38 2wq1_A General control protein 89.2 1.1 3.7E-05 21.5 4.4 26 63-88 2-27 (33)
39 3c3f_A Alpha/beta peptide with 88.7 1.2 4.1E-05 21.4 4.4 27 63-89 3-29 (34)
40 2hy6_A General control protein 87.4 1.2 4E-05 21.5 3.7 27 63-89 3-29 (34)
41 1uo4_A General control protein 86.7 1.3 4.6E-05 21.3 3.7 27 63-89 3-29 (34)
42 1ci6_A Transcription factor AT 86.6 1.5 5.3E-05 23.8 4.4 27 62-88 31-57 (63)
43 1uii_A Geminin; human, DNA rep 86.5 2.7 9.4E-05 24.3 5.6 35 54-88 39-73 (83)
44 4dzn_A Coiled-coil peptide CC- 86.3 1.6 5.6E-05 20.3 4.4 27 63-89 4-30 (33)
45 2bni_A General control protein 86.2 1.5 5.1E-05 21.2 3.7 27 63-89 3-29 (34)
46 3w03_C DNA repair protein XRCC 83.8 3 0.0001 27.5 5.6 38 51-88 142-179 (184)
47 3s9g_A Protein hexim1; cyclin 83.6 4.9 0.00017 24.0 5.9 19 70-88 67-85 (104)
48 2r2v_A GCN4 leucine zipper; co 83.2 2.7 9.1E-05 20.2 4.4 27 63-89 3-29 (34)
49 1ci6_A Transcription factor AT 83.1 3.9 0.00013 22.1 5.5 31 59-89 21-51 (63)
50 1wlq_A Geminin; coiled-coil; 2 83.0 4.2 0.00014 23.5 5.3 36 53-88 30-65 (83)
51 2wuj_A Septum site-determining 83.0 1.9 6.6E-05 22.9 3.7 29 61-89 27-55 (57)
52 1jnm_A Proto-oncogene C-JUN; B 82.7 4 0.00014 21.9 5.1 32 58-89 26-57 (62)
53 3ra3_A P1C; coiled coil domain 82.1 1.9 6.4E-05 19.4 2.8 25 65-89 4-28 (28)
54 3v86_A De novo design helix; c 82.0 2.4 8.2E-05 18.9 3.5 26 62-87 1-26 (27)
55 2wvr_A Geminin; DNA replicatio 79.2 5.7 0.00019 26.6 5.6 37 53-89 107-143 (209)
56 1zme_C Proline utilization tra 78.4 2.5 8.7E-05 22.5 3.3 24 61-84 44-67 (70)
57 1t2k_D Cyclic-AMP-dependent tr 78.0 6 0.0002 21.0 5.8 29 61-89 29-57 (61)
58 2l5g_A GPS2 protein, G protein 77.1 5 0.00017 19.7 5.0 32 50-81 4-35 (38)
59 2wg5_A General control protein 74.6 4 0.00014 24.4 3.6 27 63-89 9-35 (109)
60 3he4_B Synzip5; heterodimeric 74.0 6.5 0.00022 19.5 5.6 32 56-87 5-36 (46)
61 3nmd_A CGMP dependent protein 73.8 9.7 0.00033 21.4 5.4 34 55-88 27-60 (72)
62 3mlp_A Transcription factor CO 72.7 1.2 3.9E-05 32.6 1.0 38 30-67 322-360 (402)
63 2wt7_A Proto-oncogene protein 71.8 9.5 0.00033 20.4 7.9 35 55-89 24-58 (63)
64 2zxx_A Geminin; coiled-coil, c 70.7 12 0.0004 21.4 4.8 35 54-88 27-61 (79)
65 1nkp_B MAX protein, MYC proto- 69.9 5 0.00017 22.5 3.2 29 61-89 54-82 (83)
66 1hjb_A Ccaat/enhancer binding 69.6 13 0.00043 21.5 4.9 54 14-89 18-71 (87)
67 1go4_E MAD1 (mitotic arrest de 68.9 11 0.00036 22.5 4.6 29 57-85 15-43 (100)
68 2wt7_B Transcription factor MA 68.1 15 0.0005 21.5 5.0 15 22-36 26-40 (90)
69 1a93_A Coiled coil, LZ, MYC pr 68.1 8.6 0.0003 18.5 3.9 26 64-89 3-28 (34)
70 3w03_C DNA repair protein XRCC 68.0 7.9 0.00027 25.5 4.2 32 58-89 142-173 (184)
71 2wuj_A Septum site-determining 67.8 8.9 0.0003 20.2 3.7 30 54-83 27-56 (57)
72 3mq7_A Bone marrow stromal ant 67.6 11 0.00037 23.2 4.4 25 63-87 80-104 (121)
73 2pnv_A Small conductance calci 66.6 11 0.00037 19.0 4.6 31 59-89 7-37 (43)
74 3azd_A Short alpha-tropomyosin 65.8 3.7 0.00013 20.0 1.8 29 61-89 4-32 (37)
75 1dip_A Delta-sleep-inducing pe 65.4 11 0.00039 21.2 3.9 23 66-88 20-42 (78)
76 3mq7_A Bone marrow stromal ant 63.5 23 0.00078 21.7 6.2 28 62-89 72-99 (121)
77 3q4f_C DNA repair protein XRCC 63.1 18 0.00063 23.8 5.2 29 55-83 155-183 (186)
78 3viq_B Mating-type switching p 62.9 15 0.0005 21.2 4.2 25 65-89 5-29 (85)
79 1ik9_A DNA repair protein XRCC 61.3 23 0.00079 23.6 5.6 36 54-89 125-160 (213)
80 1pd7_B MAD1; PAH2, SIN3, eukar 59.8 10 0.00034 17.1 2.4 19 50-68 2-20 (26)
81 2w6a_A ARF GTPase-activating p 59.1 19 0.00066 19.4 4.4 25 66-90 39-63 (63)
82 3efg_A Protein SLYX homolog; x 58.4 22 0.00076 19.9 4.9 27 63-89 30-56 (78)
83 2jee_A YIIU; FTSZ, septum, coi 56.8 25 0.00085 20.1 4.4 13 65-77 31-43 (81)
84 1fmh_A General control protein 55.3 15 0.00051 17.0 4.4 25 64-88 4-28 (33)
85 1hjb_A Ccaat/enhancer binding 55.0 28 0.00096 20.0 9.7 30 60-89 35-64 (87)
86 1gu4_A CAAT/enhancer binding p 54.2 27 0.00093 19.6 9.7 55 13-89 17-71 (78)
87 3nmd_A CGMP dependent protein 53.8 25 0.00084 19.7 4.0 27 62-88 41-67 (72)
88 3q4f_C DNA repair protein XRCC 52.9 29 0.00098 22.8 4.8 30 60-89 153-182 (186)
89 3hnw_A Uncharacterized protein 52.7 39 0.0013 20.9 6.0 17 28-44 35-53 (138)
90 2er8_A Regulatory protein Leu3 52.3 8.4 0.00029 20.5 1.9 21 61-81 49-69 (72)
91 3s9g_A Protein hexim1; cyclin 51.8 34 0.0012 20.3 4.6 28 62-89 66-93 (104)
92 2l5g_B Putative uncharacterize 51.1 22 0.00077 17.8 5.0 30 60-89 8-37 (42)
93 3s4r_A Vimentin; alpha-helix, 49.9 35 0.0012 19.6 4.8 15 63-77 25-39 (93)
94 2lw1_A ABC transporter ATP-bin 49.4 22 0.00076 20.1 3.5 22 67-88 21-42 (89)
95 3m9b_A Proteasome-associated A 48.7 28 0.00095 24.0 4.4 26 64-89 71-96 (251)
96 2ket_A Cathelicidin-6; antimic 47.9 13 0.00044 16.5 1.8 20 24-43 4-23 (27)
97 1t6f_A Geminin; coiled-coil, c 46.8 25 0.00085 17.0 5.6 30 59-88 5-34 (37)
98 1gk7_A Vimentin; intermediate 45.3 27 0.00092 17.0 3.9 18 60-77 19-36 (39)
99 3mq9_A Bone marrow stromal ant 44.6 52 0.0018 23.6 5.6 65 24-88 396-470 (471)
100 1wt6_A Myotonin-protein kinase 44.2 43 0.0015 19.1 4.4 26 63-88 47-72 (81)
101 2xdj_A Uncharacterized protein 43.1 45 0.0015 18.9 5.2 30 59-88 25-54 (83)
102 4aj5_A SKA1, spindle and kinet 41.3 50 0.0017 19.2 4.1 50 29-78 12-61 (91)
103 1zxa_A CGMP-dependent protein 40.4 46 0.0016 18.2 5.0 35 54-88 18-52 (67)
104 2akf_A Coronin-1A; coiled coil 40.2 30 0.001 16.0 4.5 24 62-85 7-30 (32)
105 3vmx_A Voltage-gated hydrogen 40.1 39 0.0013 17.4 4.1 22 61-82 18-39 (48)
106 1p9i_A Cortexillin I/GCN4 hybr 39.7 29 0.00099 15.7 3.2 18 64-81 9-26 (31)
107 3mq9_A Bone marrow stromal ant 39.2 70 0.0024 22.9 5.6 11 76-86 451-461 (471)
108 2zvf_A Alanyl-tRNA synthetase; 38.3 69 0.0024 19.7 5.0 25 62-86 33-57 (171)
109 3m9b_A Proteasome-associated A 37.9 34 0.0012 23.5 3.5 34 56-89 56-89 (251)
110 1pyv_A ATP synthase beta chain 37.7 26 0.00089 17.8 2.2 26 37-62 26-54 (54)
111 3i00_A HIP-I, huntingtin-inter 37.4 69 0.0023 19.4 6.2 26 54-79 33-58 (120)
112 3rrk_A V-type ATPase 116 kDa s 37.2 1E+02 0.0034 21.3 7.9 54 29-83 71-128 (357)
113 4emc_A Monopolin complex subun 36.5 91 0.0031 20.5 5.2 24 66-89 32-55 (190)
114 1go4_E MAD1 (mitotic arrest de 36.4 67 0.0023 19.0 5.3 31 59-89 10-40 (100)
115 2oa5_A Hypothetical protein BQ 35.6 44 0.0015 20.1 3.4 21 64-84 11-31 (110)
116 1ufz_A Hypothetical protein BA 35.5 55 0.0019 18.7 3.6 27 17-44 22-48 (83)
117 3ljm_A Coil Ser L9C; de novo d 35.4 35 0.0012 15.5 3.9 24 65-88 5-28 (31)
118 4etp_A Kinesin-like protein KA 34.9 43 0.0015 24.2 3.9 26 63-88 12-37 (403)
119 3iv1_A Tumor susceptibility ge 34.7 63 0.0022 18.2 4.8 29 61-89 46-74 (78)
120 2ocy_A RAB guanine nucleotide 34.6 86 0.0029 19.9 4.8 29 55-83 7-35 (154)
121 1fxk_A Prefoldin; archaeal pro 34.2 65 0.0022 18.2 5.6 60 30-89 34-100 (107)
122 1jcd_A Major outer membrane li 34.2 52 0.0018 17.1 4.4 16 66-81 16-31 (52)
123 2zqm_A Prefoldin beta subunit 34.0 68 0.0023 18.4 5.6 59 30-88 39-104 (117)
124 4emc_A Monopolin complex subun 33.0 47 0.0016 21.9 3.4 24 64-87 23-46 (190)
125 1lwu_C Fibrinogen gamma chain; 32.6 1.3E+02 0.0045 21.2 6.0 29 60-88 25-53 (323)
126 3m91_A Proteasome-associated A 31.9 57 0.0019 16.8 4.1 23 65-87 27-49 (51)
127 1l8d_A DNA double-strand break 31.3 77 0.0026 18.2 5.8 37 53-89 63-99 (112)
128 2v66_B Nuclear distribution pr 31.1 88 0.003 18.7 5.5 25 63-87 37-61 (111)
129 3coq_A Regulatory protein GAL4 30.9 64 0.0022 17.4 3.5 20 61-80 45-64 (89)
130 2aze_A Transcription factor DP 30.5 67 0.0023 20.5 3.8 27 61-87 5-31 (155)
131 3pvv_A Chromosomal replication 30.5 82 0.0028 18.2 4.9 34 53-86 64-97 (101)
132 3gpv_A Transcriptional regulat 30.3 66 0.0023 19.7 3.7 26 60-85 101-126 (148)
133 3a2a_A Voltage-gated hydrogen 29.5 68 0.0023 17.0 4.7 23 62-84 26-48 (58)
134 2ve7_A Kinetochore protein HEC 29.5 81 0.0028 22.0 4.4 26 62-87 186-211 (315)
135 3gp4_A Transcriptional regulat 29.4 98 0.0034 18.8 4.4 26 60-85 87-112 (142)
136 1hwt_C Protein (heme activator 29.2 25 0.00087 18.9 1.5 21 60-80 57-77 (81)
137 2j5u_A MREC protein; bacterial 29.0 16 0.00056 24.8 0.7 9 80-88 48-56 (255)
138 1lwu_B Fibrinogen beta chain; 28.7 72 0.0025 22.5 4.0 26 63-88 30-55 (323)
139 3kqg_A Langerin, C-type lectin 28.1 61 0.0021 19.8 3.3 15 65-79 20-34 (182)
140 3q8t_A Beclin-1; autophagy, AT 28.0 91 0.0031 17.9 4.9 29 60-88 24-52 (96)
141 4efa_G V-type proton ATPase su 27.6 1E+02 0.0036 18.5 5.9 33 53-85 23-56 (119)
142 3cve_A Homer protein homolog 1 26.8 87 0.003 17.3 5.0 26 60-85 6-31 (72)
143 3cvf_A Homer-3, homer protein 26.5 92 0.0032 17.5 4.1 24 62-85 14-37 (79)
144 2v4h_A NF-kappa-B essential mo 26.0 1.1E+02 0.0038 18.3 5.1 6 39-44 13-18 (110)
145 1pyi_A Protein (pyrimidine pat 25.7 67 0.0023 17.7 2.9 19 61-79 48-66 (96)
146 4g1a_A AQ-C16C19 peptide; heli 25.5 37 0.0013 15.5 1.4 24 65-88 4-27 (32)
147 1t3u_A Conserved hypothetical 25.4 1E+02 0.0034 17.6 7.5 57 28-85 33-92 (104)
148 3vea_B MATP, macrodomain TER p 25.3 1.3E+02 0.0045 18.9 4.9 35 53-87 112-146 (151)
149 1lrz_A FEMA, factor essential 25.3 92 0.0031 22.2 4.2 21 61-81 247-267 (426)
150 3iyn_Q Protein IX, PIX, hexon- 25.2 71 0.0024 19.8 3.1 23 66-88 103-125 (140)
151 1fzc_C Fibrin; blood coagulati 25.1 1.1E+02 0.0037 21.6 4.4 27 62-88 19-45 (319)
152 1xkm_B Distinctin chain B; por 24.6 55 0.0019 14.2 3.3 18 54-71 4-21 (26)
153 3o0z_A RHO-associated protein 24.6 1E+02 0.0035 19.9 3.9 27 63-89 50-76 (168)
154 4e61_A Protein BIM1; EB1-like 24.4 1.2E+02 0.0041 18.1 4.4 20 62-81 19-38 (106)
155 3tnu_B Keratin, type II cytosk 23.6 1.1E+02 0.0037 18.3 3.8 14 31-44 14-27 (129)
156 2kt9_A Probable 30S ribosomal 23.6 29 0.00099 21.1 1.0 38 32-69 46-83 (116)
157 2bid_A Protein (BID); programm 23.6 1.6E+02 0.0056 19.3 4.8 36 13-48 112-147 (197)
158 3mud_A DNA repair protein XRCC 22.0 1.7E+02 0.0058 19.0 5.8 33 55-87 129-161 (175)
159 2ve7_C Kinetochore protein NUF 21.9 59 0.002 22.0 2.5 19 53-71 123-141 (250)
160 1bgc_A Granulocyte colony-stim 21.5 1.4E+02 0.0049 19.3 4.1 27 53-79 11-37 (174)
161 1buu_A Protein (mannose-bindin 21.5 1.3E+02 0.0045 18.2 3.9 20 63-82 25-44 (168)
162 2izy_A CAMP-dependent protein 21.3 96 0.0033 15.9 3.6 22 54-75 28-49 (54)
163 1fxk_C Protein (prefoldin); ar 21.1 1.4E+02 0.0047 17.6 5.1 11 30-40 34-44 (133)
No 1
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.92 E-value=1.1e-24 Score=131.19 Aligned_cols=79 Identities=35% Similarity=0.539 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 11 ESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 11 ~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
++..+|.+||.+||+||..||++|..|+.+||.+++..|+||++||..||+||++|+..+..+..+++.|+.++..|++
T Consensus 2 ed~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~ 80 (88)
T 1nkp_A 2 HMNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKH 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677999999999999999999999999999998766789999999999999999999999998888888888888765
No 2
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.91 E-value=4.5e-24 Score=126.49 Aligned_cols=76 Identities=28% Similarity=0.407 Sum_probs=71.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14769 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90 (90)
Q Consensus 15 ~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~q 90 (90)
+|.+||.+||+||..||.||..|+++||..++..|+||++||.+|++||+.|+..+..+..+++.|+.++..|+++
T Consensus 1 ~R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 1 SRSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999999987777899999999999999999999999999999999999999763
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.90 E-value=1.1e-23 Score=125.47 Aligned_cols=75 Identities=87% Similarity=1.186 Sum_probs=70.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14769 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90 (90)
Q Consensus 15 ~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~q 90 (90)
+|.+||.+||+||..||.+|..|+.+||.+++. |+||++||..||+||+.|+..+..++.+++.|+.++..|+++
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~-k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGE-KASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999997654 499999999999999999999999999999999999998763
No 4
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.89 E-value=1.9e-23 Score=123.66 Aligned_cols=74 Identities=84% Similarity=1.147 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 10 IESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQN 84 (90)
Q Consensus 10 ~~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~ 84 (90)
.+...+|.+||.+||+||..||.+|..|+.+||.+.+. |+||+.||..||+||++|+..+..|..+++.|++++
T Consensus 7 ~~~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~-k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 7 ESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGE-KASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQN 80 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred cchHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44567999999999999999999999999999998654 599999999999999999999999999999998763
No 5
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.88 E-value=6.8e-22 Score=117.55 Aligned_cols=75 Identities=32% Similarity=0.489 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 12 ~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
...+|.+||.+||+||..||.+|..|+.+||++ ..+++|++||..||+||++|+..+..|..++..|+..++..+
T Consensus 3 ~~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~--~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 3 RGEKRTAHNAIEKRYRSSINDKIIELKDLVVGT--EAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS--SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHhccCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456899999999999999999999999999986 457999999999999999999999999999999999888754
No 6
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.85 E-value=3.6e-21 Score=121.25 Aligned_cols=85 Identities=26% Similarity=0.352 Sum_probs=51.9
Q ss_pred cCCcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q psy14769 5 ERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQG-EKVASRAQILKKAADYIQFMRRKNASHQQD------- 76 (90)
Q Consensus 5 ~~~~~~~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~-~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~------- 76 (90)
+.........+|.+||.+||+||+.||.+|..|+.+||.+.+ ..|++|++||..||+||++|+..+..+...
T Consensus 17 ~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l 96 (118)
T 4ati_A 17 EARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKL 96 (118)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred hHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344556789999999999999999999999999999864 346999999999999999999999888754
Q ss_pred ---HHHHHHHHHHHhh
Q psy14769 77 ---IDDLKRQNAILEA 89 (90)
Q Consensus 77 ---~~~L~~~~~~L~~ 89 (90)
...|..++++|+.
T Consensus 97 ~~~n~~L~~riqeLE~ 112 (118)
T 4ati_A 97 EHANRHLLLRVQELEM 112 (118)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555555554
No 7
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=103.76 Aligned_cols=63 Identities=24% Similarity=0.364 Sum_probs=55.0
Q ss_pred chhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 9 DIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASH 73 (90)
Q Consensus 9 ~~~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l 73 (90)
+..+..+|.+||.+||+||+.||.+|.+|+.+||+. ..|++|++||..||+||+.|+....=+
T Consensus 2 d~k~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~--~~K~dK~sIL~~aI~yik~Lq~~~~~~ 64 (71)
T 4h10_B 2 DDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGN--ARKMDKSTVLQKSIDFLRKHKEITAWL 64 (71)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSC--CSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChhhhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCC--CCCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 345678999999999999999999999999999965 447999999999999999999876543
No 8
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.79 E-value=5.1e-20 Score=108.03 Aligned_cols=62 Identities=37% Similarity=0.551 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhcCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPS-LQGEKVASRAQILKKAADYIQFMRRKNASHQ 74 (90)
Q Consensus 13 ~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~-~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~ 74 (90)
..+|.+||.+||+||..||.+|..|+.+||. ..+.+..||++||..||+||++|++.++++.
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999999995 4444544899999999999999999888753
No 9
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.76 E-value=2.8e-18 Score=96.54 Aligned_cols=56 Identities=27% Similarity=0.388 Sum_probs=52.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHH
Q psy14769 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKN 70 (90)
Q Consensus 15 ~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~ 70 (90)
+|..||..||+|+..||.+|+.|+.+||..+..+|+||+.||..|++||..|++.+
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L 57 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999877788999999999999999999754
No 10
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.74 E-value=1e-19 Score=103.69 Aligned_cols=57 Identities=42% Similarity=0.640 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCc---ccccHHHHHHHHHHHHHHHHHHH
Q psy14769 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGE---KVASRAQILKKAADYIQFMRRKN 70 (90)
Q Consensus 14 ~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~---~k~sK~~iL~~ai~yIk~L~~~~ 70 (90)
.+|.+||.+|++||..||.+|.+|+.+||.+.+. .+++|++||..||+||++|+..+
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999998643 36999999999999999998754
No 11
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.74 E-value=1.4e-17 Score=95.72 Aligned_cols=59 Identities=24% Similarity=0.406 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHH
Q psy14769 11 ESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKN 70 (90)
Q Consensus 11 ~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~ 70 (90)
....+|..||..||+|+..||++|+.|+.+||..+ ..|+||+.||..||+||.+|++.+
T Consensus 8 ~~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~-~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 8 TNADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CchhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999876 456999999999999999998743
No 12
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.73 E-value=3.2e-19 Score=101.25 Aligned_cols=56 Identities=23% Similarity=0.426 Sum_probs=49.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCC----cccccHHHHHHHHHHHHHHHHHHH
Q psy14769 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQG----EKVASRAQILKKAADYIQFMRRKN 70 (90)
Q Consensus 15 ~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~----~~k~sK~~iL~~ai~yIk~L~~~~ 70 (90)
+|.+|+.+||+||+.||.+|.+|+.+||.+.. ..++||++||..||+||++|++.+
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999997631 346999999999999999998753
No 13
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.69 E-value=2.9e-17 Score=95.60 Aligned_cols=57 Identities=21% Similarity=0.399 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCC-CcccccHHHHHHHHHHHHHHHHH
Q psy14769 12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQ-GEKVASRAQILKKAADYIQFMRR 68 (90)
Q Consensus 12 ~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~-~~~k~sK~~iL~~ai~yIk~L~~ 68 (90)
-..+|.+|+.+||+||+.||.+|.+|+.+||.+. ...|++|++||..||+||+.|+.
T Consensus 6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 4568999999999999999999999999999874 23579999999999999999864
No 14
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.52 E-value=5e-15 Score=84.59 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=45.7
Q ss_pred HHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHH
Q psy14769 20 NALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRR 68 (90)
Q Consensus 20 n~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~ 68 (90)
+..||+|+..||.+|+.|+.+||..+..+|+||+.||..||+||..|+.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 4679999999999999999999999888899999999999999999984
No 15
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=99.51 E-value=1.1e-13 Score=81.88 Aligned_cols=63 Identities=24% Similarity=0.309 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhhcCCCCC-CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhh
Q psy14769 27 RDHIKDSFSSLRDSVPSLQ-GEKVASRAQILKKAADYIQFMRRKNASHQQDID----------DLKRQNAILEA 89 (90)
Q Consensus 27 R~~i~~~~~~L~~llP~~~-~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~----------~L~~~~~~L~~ 89 (90)
|.+||++|.+|+.+||.+. ...+++|++||.+||+||++|++++..+.++.. .|-.++++|+-
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqELE~ 77 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEM 77 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 7899999999999999864 234799999999999999999988887765554 44446666653
No 16
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=99.34 E-value=3.4e-12 Score=77.48 Aligned_cols=57 Identities=26% Similarity=0.349 Sum_probs=46.3
Q ss_pred HHHHHHH-HhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHH
Q psy14769 16 RAHHNAL-ERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNAS 72 (90)
Q Consensus 16 R~~hn~~-Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~ 72 (90)
|..++.. |++|...||.+|+.|+.+||..+..+|+||+.||..||+||..|+..+..
T Consensus 25 R~k~~~~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 25 RSKTPVDDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3334433 57899999999999999999988778899999999999999999987654
No 17
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.32 E-value=1.9e-12 Score=93.07 Aligned_cols=60 Identities=23% Similarity=0.392 Sum_probs=42.1
Q ss_pred cchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHH
Q psy14769 8 YDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRK 69 (90)
Q Consensus 8 ~~~~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~ 69 (90)
++.....+|.+||.+||+||+.||..|.+|+.+||.. ..|++|++||..||.||+.++.-
T Consensus 5 ~~~~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~--~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 5 EDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGN--ARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHTCCSS--SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCC--CCCcCHHHHHHHHHHHHHHHHhh
Confidence 4445567899999999999999999999999999943 45799999999999999998764
No 18
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.28 E-value=2.3e-12 Score=93.58 Aligned_cols=59 Identities=20% Similarity=0.362 Sum_probs=50.5
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCC-CcccccHHHHHHHHHHHHHHHHH
Q psy14769 10 IESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQ-GEKVASRAQILKKAADYIQFMRR 68 (90)
Q Consensus 10 ~~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~-~~~k~sK~~iL~~ai~yIk~L~~ 68 (90)
.....+|.+||.+||+||+.||..|.+|+.+||.+. ...|++|++||..||.||+.|+.
T Consensus 8 ~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 8 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred chhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 344568999999999999999999999999999753 23579999999999999999874
No 19
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=93.81 E-value=0.18 Score=26.93 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
.||..|+..+..|+.++..|..++..|+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999998875
No 20
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=93.37 E-value=0.12 Score=23.40 Aligned_cols=27 Identities=37% Similarity=0.473 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
|..|.+.+..+.+++..|.-++..|++
T Consensus 2 irrlkqknarlkqeiaaleyeiaaleq 28 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAALEQ 28 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHhcC
Confidence 567889999999999999999888864
No 21
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=93.37 E-value=0.19 Score=31.88 Aligned_cols=37 Identities=27% Similarity=0.503 Sum_probs=32.1
Q ss_pred HHHHHHHHhhcCCCCCC-cccccHHHHHHHHHHHHHHH
Q psy14769 30 IKDSFSSLRDSVPSLQG-EKVASRAQILKKAADYIQFM 66 (90)
Q Consensus 30 i~~~~~~L~~llP~~~~-~~k~sK~~iL~~ai~yIk~L 66 (90)
|.-+|+.|..++|-.++ ..++.|-.||.+|.+++..|
T Consensus 96 Id~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 96 IDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp HHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred cccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 67799999999998763 45799999999999998876
No 22
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=93.28 E-value=0.35 Score=26.53 Aligned_cols=33 Identities=12% Similarity=0.062 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14769 58 KAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90 (90)
Q Consensus 58 ~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~q 90 (90)
+-.+|+..|+..+..|..+...|..++..|+.+
T Consensus 27 RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 27 RKLQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888888888888888888888754
No 23
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=93.15 E-value=0.065 Score=28.63 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 64 QFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 64 k~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
..|+.++.+|+.+++.|..+++.|++
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777654
No 24
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=92.52 E-value=0.21 Score=28.09 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
.||+.|+..+..++.....|..++..|+
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr 56 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLR 56 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544444444444443
No 25
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=91.98 E-value=0.6 Score=26.99 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 56 LKKAADYIQFMRRKNASHQQDIDDLKRQNAI 86 (90)
Q Consensus 56 L~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~ 86 (90)
++.||+-|.-|+-++.+|+.+...|..+++.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888777775555544
No 26
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=91.68 E-value=0.49 Score=25.75 Aligned_cols=29 Identities=10% Similarity=0.140 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 60 ADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 60 i~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
.+||..|+..+..|..+...|..++..|+
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555555443
No 27
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=91.57 E-value=0.51 Score=25.53 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 60 ADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 60 i~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
.+||..|+..+..|..+...|..++..|+
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566665555555555555555544
No 28
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=91.35 E-value=0.64 Score=22.45 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+.+|+.++.+|-.+...|..++..|+.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 567888888888888888888888763
No 29
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=91.16 E-value=0.66 Score=22.66 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
+.+|+..+++|-.+...|..++..|+
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 56788888888888888888887776
No 30
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=91.11 E-value=0.23 Score=24.15 Aligned_cols=26 Identities=81% Similarity=1.023 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14769 65 FMRRKNASHQQDIDDLKRQNAILEAQ 90 (90)
Q Consensus 65 ~L~~~~~~l~~~~~~L~~~~~~L~~q 90 (90)
++..++...++.+++|++++..|+.|
T Consensus 4 ~mRrKn~a~qqDIddlkrQN~~Le~Q 29 (34)
T 1a93_B 4 GMRRKNDTHQQDIDDLKRQNALLEQQ 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhhHhhHhhHHHHHHHHHHHHHH
Confidence 35567777777788888777777654
No 31
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=90.76 E-value=0.43 Score=22.95 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 64 QFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 64 k~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
.+|+.++.+|-.+...|..++..|+.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46888888888888888888888763
No 32
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=90.73 E-value=0.42 Score=25.37 Aligned_cols=21 Identities=5% Similarity=0.142 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy14769 69 KNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 69 ~~~~l~~~~~~L~~~~~~L~~ 89 (90)
++..|+.++..|+.++..|.+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~ 40 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVE 40 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666555543
No 33
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=90.69 E-value=0.71 Score=24.84 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
.|+..|+..+..|..+...|..++..|
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L 48 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLL 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555444444444444444443
No 34
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=89.95 E-value=0.92 Score=21.75 Aligned_cols=26 Identities=8% Similarity=0.050 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
+.+|+.+++++-.+...|..++..|+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 46788888888888888888888776
No 35
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=89.78 E-value=0.94 Score=22.91 Aligned_cols=27 Identities=19% Similarity=0.416 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
.+.|+..+.+|++.+..|..++.-|++
T Consensus 12 ~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 12 VKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 445555566666666666666666654
No 36
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=89.47 E-value=0.69 Score=22.60 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
+++|..++.++..++..|..++..|+
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45677777777777777777777765
No 37
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=89.36 E-value=1.2 Score=22.54 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
.|+..|+...+.++..+.+|..++..|+.
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888999999999999999888887753
No 38
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=89.16 E-value=1.1 Score=21.49 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
+++|+.+++++-.++..|..++..|+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46788888888888888888888776
No 39
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=88.67 E-value=1.2 Score=21.43 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+.+|+.++++|-.+...|..++..|+.
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 567888888888888888888887763
No 40
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=87.39 E-value=1.2 Score=21.50 Aligned_cols=27 Identities=11% Similarity=-0.007 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+++|..++++|-.+...|..++..|+.
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467788888888888888888877763
No 41
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=86.75 E-value=1.3 Score=21.32 Aligned_cols=27 Identities=7% Similarity=0.147 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+.+|+.+++++-.+...|..++..|+.
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467888888888888888888887763
No 42
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=86.57 E-value=1.5 Score=23.77 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 62 YIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 62 yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
-+..|...+.+|..++..|..++..|+
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666664
No 43
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=86.52 E-value=2.7 Score=24.28 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 54 QILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 54 ~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
.-|..|++=-+.|...+..++.++..|+.++..|+
T Consensus 39 ~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 39 KALYEALKENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777788888888888888888888887775
No 44
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=86.29 E-value=1.6 Score=20.33 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
|-.|.++...+..++..|+-++..|++
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 556778888888888888888887764
No 45
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=86.18 E-value=1.5 Score=21.15 Aligned_cols=27 Identities=7% Similarity=0.005 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+.+|+.++.++-.+...|..++..|+.
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 467888888888888888888887763
No 46
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=83.76 E-value=3 Score=27.50 Aligned_cols=38 Identities=18% Similarity=0.123 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 51 SRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 51 sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
.-..++.-+++.+..|+..+..|+++.+.|..+-....
T Consensus 142 ~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l 179 (184)
T 3w03_C 142 VIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQ 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557778888888888888888888888888766543
No 47
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=83.56 E-value=4.9 Score=23.99 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy14769 70 NASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 70 ~~~l~~~~~~L~~~~~~L~ 88 (90)
+.+|+.+++.|+.+++.|.
T Consensus 67 v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 67 VRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555666666665554
No 48
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=83.21 E-value=2.7 Score=20.24 Aligned_cols=27 Identities=7% Similarity=-0.013 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+++|..+++++-.+...|..++..|+.
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 567888888888888888888887763
No 49
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=83.14 E-value=3.9 Score=22.09 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 59 AADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 59 ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
-.+++..|+..+..|..++..|..++..|+.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888888888888888888887764
No 50
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=83.02 E-value=4.2 Score=23.48 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 53 AQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 53 ~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
-.-|..|.+=-..|+..+..++.++..|+.++..|+
T Consensus 30 r~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 30 RKALYEALKENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777888888888888888888888888888775
No 51
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=82.98 E-value=1.9 Score=22.90 Aligned_cols=29 Identities=10% Similarity=0.240 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+|+..+-.....+..++..|+.++..|+.
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666666666666654
No 52
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=82.73 E-value=4 Score=21.86 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 58 KAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 58 ~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
..-+-+..|...+..|..++..|..++..|+.
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344677889999999999999999988865
No 53
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=82.14 E-value=1.9 Score=19.40 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 65 FMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 65 ~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
.|+=++..+++.+..|++.+..|++
T Consensus 4 alefendaleqkiaalkqkiaslkq 28 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLKQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHhccHHHHHHHHHHHHHHHHhcC
Confidence 3555677888888888888887763
No 54
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=82.00 E-value=2.4 Score=18.88 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 62 YIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 62 yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
|+-+|..++-++.-++..|+-++.-|
T Consensus 1 yvyqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 1 YVYQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHHHHHHHHHhcc
Confidence 45567777777777777777776654
No 55
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=79.16 E-value=5.7 Score=26.64 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 53 AQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 53 ~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
-.-|..|++--+.|+..+..++.++..|+.++..|+.
T Consensus 107 R~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 107 RKALYEALKENEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999999988863
No 56
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=78.38 E-value=2.5 Score=22.52 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQN 84 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~ 84 (90)
.||..|+..+..|+..+..|...+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888887654
No 57
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=78.02 E-value=6 Score=21.02 Aligned_cols=29 Identities=17% Similarity=0.167 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
.-+..|...+..|..++..|..++..|+.
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888999999999999999988875
No 58
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=77.08 E-value=5 Score=19.68 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=27.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 50 ASRAQILKKAADYIQFMRRKNASHQQDIDDLK 81 (90)
Q Consensus 50 ~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~ 81 (90)
+.....|..+-+.|..|+.+...|+.+..+|-
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678899999999999999999998887764
No 59
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=74.57 E-value=4 Score=24.41 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+++|+.....++.++..++.++..|+.
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 578999999999999999999998875
No 60
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=74.01 E-value=6.5 Score=19.51 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 56 LKKAADYIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 56 L~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
+..--+||+.|++.+.++..-.+.|+--..+|
T Consensus 5 vkelknyiqeleernaelknlkehlkfakael 36 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLKFAKAEL 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH
Confidence 44556899999999999887777766544444
No 61
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=73.75 E-value=9.7 Score=21.36 Aligned_cols=34 Identities=9% Similarity=0.105 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 55 ILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 55 iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
.|....+-|......+++++.++.....++..|+
T Consensus 27 ~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lq 60 (72)
T 3nmd_A 27 ALQEKIEELRQRDALIDELELELDQKDELIQMLQ 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555544
No 62
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=72.67 E-value=1.2 Score=32.56 Aligned_cols=38 Identities=29% Similarity=0.484 Sum_probs=24.5
Q ss_pred HHHHHHHHhhcCCCCCC-cccccHHHHHHHHHHHHHHHH
Q psy14769 30 IKDSFSSLRDSVPSLQG-EKVASRAQILKKAADYIQFMR 67 (90)
Q Consensus 30 i~~~~~~L~~llP~~~~-~~k~sK~~iL~~ai~yIk~L~ 67 (90)
|.-+|+.|..+||..++ +.++.|-.||.+|.+.+..|-
T Consensus 322 IdygfqRLqK~iPrhpGdpErLpKevilkRaadl~ealy 360 (402)
T 3mlp_A 322 IDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALY 360 (402)
T ss_dssp TTTTTTTTTTC-----------CHHHHHHHHHHHHHHHT
T ss_pred cccchhhhcccCCCCCCChHhChHHHHHHHHHHHHHHhc
Confidence 45689999999998763 457999999999999998763
No 63
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=71.79 E-value=9.5 Score=20.41 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 55 ILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 55 iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
-+..--+-+..|...+..|..++..|..++..|..
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445667888899999999999998888763
No 64
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=70.66 E-value=12 Score=21.39 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 54 QILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 54 ~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
.-|..|.+=-..|+..+..++.++..|+.++..|.
T Consensus 27 ~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~ 61 (79)
T 2zxx_A 27 KALYEALKENEKLHKEIEQKDSEIARLRKENKDLA 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777766553
No 65
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=69.90 E-value=5 Score=22.53 Aligned_cols=29 Identities=10% Similarity=-0.023 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
.-+..|+.+...|..++..|..++..|..
T Consensus 54 ~~~~~l~~e~~~L~~~~~~L~~~l~~L~~ 82 (83)
T 1nkp_B 54 RKNHTHQQDIDDLKRQNALLEQQVRALGG 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44667889999999999999999988765
No 66
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=69.64 E-value=13 Score=21.52 Aligned_cols=54 Identities=22% Similarity=0.255 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 14 ~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
.+|.-.|.+-++-|..=+.....+ -.-+..|+.++..|+.+++.|..++..|+.
T Consensus 18 ~rR~rNN~AarrSR~krk~r~~e~----------------------~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 18 IRRERNNIAVRKSRDKAKMRNLET----------------------QHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666776666665444433332 223567889999999999999999888763
No 67
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=68.92 E-value=11 Score=22.48 Aligned_cols=29 Identities=7% Similarity=0.017 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 57 KKAADYIQFMRRKNASHQQDIDDLKRQNA 85 (90)
Q Consensus 57 ~~ai~yIk~L~~~~~~l~~~~~~L~~~~~ 85 (90)
.....-|..|..+...|.++++.|..++.
T Consensus 15 ~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 15 DTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555555554444
No 68
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=68.12 E-value=15 Score=21.45 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=7.3
Q ss_pred HHhHHHHHHHHHHHH
Q psy14769 22 LERKRRDHIKDSFSS 36 (90)
Q Consensus 22 ~Er~RR~~i~~~~~~ 36 (90)
+=++||..=|.+|..
T Consensus 26 lKq~RRtlKNRgyAq 40 (90)
T 2wt7_B 26 LKQKRRTLKNRGYAQ 40 (90)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHH
Confidence 334445444555554
No 69
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=68.06 E-value=8.6 Score=18.46 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 64 QFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 64 k~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
..|+.+...|-.+.+.|+++.+.|..
T Consensus 3 ~slq~dE~kLl~ekE~l~~r~eqL~~ 28 (34)
T 1a93_A 3 GGVQAEEQKLISEEDLLRKRREQLKH 28 (34)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888888888887753
No 70
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=68.04 E-value=7.9 Score=25.48 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 58 KAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 58 ~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
..-++|-++-..+..|+.++..|.++++.|+.
T Consensus 142 ~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~ 173 (184)
T 3w03_C 142 VIRELICYCLDTIAENQAKNEHLQKENERLLR 173 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34458888899999999999999999999975
No 71
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=67.81 E-value=8.9 Score=20.21 Aligned_cols=30 Identities=13% Similarity=0.339 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 54 QILKKAADYIQFMRRKNASHQQDIDDLKRQ 83 (90)
Q Consensus 54 ~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~ 83 (90)
..|...++-+..|..++.+|+.++..|+.+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888888999999999999999888765
No 72
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=67.60 E-value=11 Score=23.16 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
|+.|.+.++....++++|+++++.|
T Consensus 80 I~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 80 ITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhchhh
Confidence 4444444555555566666655544
No 73
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=66.60 E-value=11 Score=19.02 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 59 AADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 59 ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
.++-+-.|+.....++.++..|..++..|..
T Consensus 7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 7 MYDMISDLNERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4667888899999999999999988887764
No 74
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=65.76 E-value=3.7 Score=19.98 Aligned_cols=29 Identities=28% Similarity=0.252 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
..|..|+.+.+.++.+.+.+..++..|+.
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~ 32 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKK 32 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666676676666666666553
No 75
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=65.45 E-value=11 Score=21.25 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 66 MRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 66 L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
|+..+.+|...+..|..++..|+
T Consensus 20 LKe~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 20 LKEQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555444
No 76
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=63.51 E-value=23 Score=21.70 Aligned_cols=28 Identities=7% Similarity=0.116 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 62 YIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 62 yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
-|+.|+.++..|.+++.....+++.|+.
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3888888888888888888888888865
No 77
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=63.06 E-value=18 Score=23.77 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 55 ILKKAADYIQFMRRKNASHQQDIDDLKRQ 83 (90)
Q Consensus 55 iL~~ai~yIk~L~~~~~~l~~~~~~L~~~ 83 (90)
++..+++.|..|+..+..|+.++++|..+
T Consensus 155 Li~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 155 LICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555566666555555555555543
No 78
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=62.86 E-value=15 Score=21.24 Aligned_cols=25 Identities=12% Similarity=-0.004 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 65 FMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 65 ~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
.|+..+..|+.++..|.+++..+.+
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777776666653
No 79
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=61.25 E-value=23 Score=23.58 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 54 QILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 54 ~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
.++..+++-+..|+..+..|..+++.|......|.+
T Consensus 125 elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~ 160 (213)
T 1ik9_A 125 ELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQG 160 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888777777777777777777776666654
No 80
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=59.76 E-value=10 Score=17.09 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=14.5
Q ss_pred ccHHHHHHHHHHHHHHHHH
Q psy14769 50 ASRAQILKKAADYIQFMRR 68 (90)
Q Consensus 50 ~sK~~iL~~ai~yIk~L~~ 68 (90)
+..+.+|-.|.+|+....+
T Consensus 2 ~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 3456788999999987665
No 81
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=59.13 E-value=19 Score=19.43 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14769 66 MRRKNASHQQDIDDLKRQNAILEAQ 90 (90)
Q Consensus 66 L~~~~~~l~~~~~~L~~~~~~L~~q 90 (90)
|.++..-++.++..|..++..|+.|
T Consensus 39 ls~Elr~mQ~~lq~LQsen~~Lr~q 63 (63)
T 2w6a_A 39 LSDELRKLQREIHKLQAENLQLRQP 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHhhhhhhccC
Confidence 3444444555666666666666544
No 82
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=58.41 E-value=22 Score=19.92 Aligned_cols=27 Identities=7% Similarity=-0.165 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
|..|...+.+.+.+++.|.+++..|..
T Consensus 30 IeeLn~~v~~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 30 LTELSEALADARLTGARNAELIRHLLE 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777888888888888877754
No 83
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=56.84 E-value=25 Score=20.08 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy14769 65 FMRRKNASHQQDI 77 (90)
Q Consensus 65 ~L~~~~~~l~~~~ 77 (90)
.|+.++..+.++.
T Consensus 31 ELKekN~~L~~e~ 43 (81)
T 2jee_A 31 ELKEKNNSLSQEV 43 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444433333
No 84
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=55.32 E-value=15 Score=16.96 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 64 QFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 64 k~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
-.|..++.+.+.+.-+|.+++..|+
T Consensus 4 aqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3566666666666667777776664
No 85
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=55.01 E-value=28 Score=20.01 Aligned_cols=30 Identities=10% Similarity=-0.026 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 60 ADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 60 i~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
-.-...++..+..|+.+...|+.+++.|+.
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~ 64 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSR 64 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577788888888888888888888864
No 86
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=54.17 E-value=27 Score=19.63 Aligned_cols=55 Identities=22% Similarity=0.259 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 13 ~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
-.+|.-.|.+-++-|..=+.....+. .-+..|..++..|+.++..|..++..|+.
T Consensus 17 ~~rR~rNN~AakrSR~krk~r~~e~~----------------------~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 17 KIRRERNNIAVRKSRDKAKMRNLETQ----------------------HKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777666655444443332 23567889999999999999999998874
No 87
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=53.76 E-value=25 Score=19.66 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 62 YIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 62 yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
-|..|+..+.+.+.++..|+.++-.++
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367777777777777777777665543
No 88
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=52.87 E-value=29 Score=22.84 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 60 ADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 60 i~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
-++|-+.-....+|+.++..|.++++.|..
T Consensus 153 rELi~~~L~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 153 RELICYCLDTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777788999999999999999999975
No 89
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=52.68 E-value=39 Score=20.92 Aligned_cols=17 Identities=6% Similarity=0.231 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhc--CCCC
Q psy14769 28 DHIKDSFSSLRDS--VPSL 44 (90)
Q Consensus 28 ~~i~~~~~~L~~l--lP~~ 44 (90)
..++..+..++.. -|..
T Consensus 35 ~~vd~km~ei~~~~~~~~l 53 (138)
T 3hnw_A 35 SYINNKITEFNKEESYRRM 53 (138)
T ss_dssp HHHHHHHHHHTTCHHHHTS
T ss_pred HHHHHHHHHHHhccCCCCC
Confidence 4567777787765 6655
No 90
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=52.30 E-value=8.4 Score=20.54 Aligned_cols=21 Identities=5% Similarity=0.132 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14769 61 DYIQFMRRKNASHQQDIDDLK 81 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~ 81 (90)
.||..|+..+..|+..+..|.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 677777777777766665543
No 91
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=51.85 E-value=34 Score=20.31 Aligned_cols=28 Identities=7% Similarity=0.027 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 62 YIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 62 yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
-|..|..++..|..+...|.++++.-.+
T Consensus 66 ~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4667777777777777777777665443
No 92
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=51.14 E-value=22 Score=17.77 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 60 ADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 60 i~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+.-|..+-.+...-++++..|+.++..|+.
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777788888888888877763
No 93
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=49.89 E-value=35 Score=19.64 Aligned_cols=15 Identities=13% Similarity=0.472 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDI 77 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~ 77 (90)
+++|++.+..|+.++
T Consensus 25 VR~LEqqN~~Le~~i 39 (93)
T 3s4r_A 25 VRFLEQQNKILLAEL 39 (93)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444333
No 94
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=49.39 E-value=22 Score=20.10 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy14769 67 RRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 67 ~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
+.+...+..+|+.|..++..|.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le 42 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQ 42 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555444
No 95
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=48.67 E-value=28 Score=23.97 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 64 QFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 64 k~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
.+|....+.++.++..|+.+++.|++
T Consensus 71 e~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 71 SKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45667777778888888888887753
No 96
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=47.94 E-value=13 Score=16.45 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHhhcCCC
Q psy14769 24 RKRRDHIKDSFSSLRDSVPS 43 (90)
Q Consensus 24 r~RR~~i~~~~~~L~~llP~ 43 (90)
++-|..++..|..|..+||.
T Consensus 4 krfrkkfkklfkklspvipl 23 (27)
T 2ket_A 4 KRFRKKFKKLFKKLSPVIPL 23 (27)
T ss_dssp HHHHHHHHHHHHHHSCSCHH
T ss_pred HHHHHHHHHHHHhcCcccch
Confidence 45677888899998888874
No 97
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=46.80 E-value=25 Score=17.01 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 59 AADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 59 ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
|..-=.+|+.....-..++..|+.++..|.
T Consensus 5 ~L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 5 ALKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 333345677777777888888998888875
No 98
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=45.33 E-value=27 Score=17.01 Aligned_cols=18 Identities=17% Similarity=0.427 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14769 60 ADYIQFMRRKNASHQQDI 77 (90)
Q Consensus 60 i~yIk~L~~~~~~l~~~~ 77 (90)
|+-+..|++.+..|+.++
T Consensus 19 idkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 19 IDKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555554443
No 99
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=44.56 E-value=52 Score=23.58 Aligned_cols=65 Identities=6% Similarity=0.147 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCcc--cccHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 24 RKRRDHIKDSFSSLRDSVPSLQGEK--VASRAQILKKAA--------DYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 24 r~RR~~i~~~~~~L~~llP~~~~~~--k~sK~~iL~~ai--------~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
++....|...+++++.-+|...... --.-+..|+.+. .-|+.|+.++.++.++++.+..++++++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455667778888777776542100 011133333333 3577777777777777777777777765
No 100
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=44.23 E-value=43 Score=19.07 Aligned_cols=26 Identities=12% Similarity=0.300 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
++.-+..+.+|..++..|+.++..|+
T Consensus 47 L~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 47 LREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666777777777777665
No 101
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=43.08 E-value=45 Score=18.91 Aligned_cols=30 Identities=10% Similarity=-0.040 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 59 AADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 59 ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
-..-|..|+.++..|+-.++.+..++..+.
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334455666666666655565555555544
No 102
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=41.33 E-value=50 Score=19.21 Aligned_cols=50 Identities=12% Similarity=0.240 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 29 HIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDID 78 (90)
Q Consensus 29 ~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~ 78 (90)
.||..+..++..+....-..-++.-++|.+--+-|--+.+-..+++.++.
T Consensus 12 hineKIs~ikk~L~Lr~~gqdP~lk~~L~Kig~Ei~~l~eLLn~~E~eV~ 61 (91)
T 4aj5_A 12 HVNEKIGNIKKTLSLRNCGQEPTLKTVLNKIGDEIIVINELLNKLELEIQ 61 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777664322112244446666655555555554444444443
No 103
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=40.44 E-value=46 Score=18.25 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 54 QILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 54 ~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
.+|..==.-|..|+..+.....++..|+.++..++
T Consensus 18 ~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 18 KILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445577777777777788888877776553
No 104
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=40.21 E-value=30 Score=16.00 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 62 YIQFMRRKNASHQQDIDDLKRQNA 85 (90)
Q Consensus 62 yIk~L~~~~~~l~~~~~~L~~~~~ 85 (90)
-+..|+.-+++|+..++.|..-++
T Consensus 7 ~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 7 DVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666666666666665443
No 105
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=40.15 E-value=39 Score=17.36 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKR 82 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~ 82 (90)
.-|..|+....+++++++.|++
T Consensus 18 ~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 18 TKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHH
Confidence 3355566666666666666554
No 106
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=39.69 E-value=29 Score=15.75 Aligned_cols=18 Identities=11% Similarity=0.274 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14769 64 QFMRRKNASHQQDIDDLK 81 (90)
Q Consensus 64 k~L~~~~~~l~~~~~~L~ 81 (90)
-.|+.+++++...+++|-
T Consensus 9 asleaenkqlkakveell 26 (31)
T 1p9i_A 9 ASLEAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555443
No 107
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=39.21 E-value=70 Score=22.88 Aligned_cols=11 Identities=18% Similarity=0.202 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q psy14769 76 DIDDLKRQNAI 86 (90)
Q Consensus 76 ~~~~L~~~~~~ 86 (90)
++..|..+++.
T Consensus 451 ~~~~~~~~~~~ 461 (471)
T 3mq9_A 451 EITTLNHKLQD 461 (471)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 108
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=38.30 E-value=69 Score=19.69 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 62 YIQFMRRKNASHQQDIDDLKRQNAI 86 (90)
Q Consensus 62 yIk~L~~~~~~l~~~~~~L~~~~~~ 86 (90)
-|..|+.+..+++.+++.|+.++..
T Consensus 33 ~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 33 TVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665443
No 109
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=37.91 E-value=34 Score=23.52 Aligned_cols=34 Identities=12% Similarity=0.226 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 56 LKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 56 L~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+......+..|...+..|...+..++.++..|+.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lke 89 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALRE 89 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555677777777788888888888887765
No 110
>1pyv_A ATP synthase beta chain, mitochondrial precursor; hydrolase; NMR {Nicotiana plumbaginifolia} SCOP: j.36.4.1
Probab=37.71 E-value=26 Score=17.84 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=17.4
Q ss_pred HhhcCCCCC---CcccccHHHHHHHHHHH
Q psy14769 37 LRDSVPSLQ---GEKVASRAQILKKAADY 62 (90)
Q Consensus 37 L~~llP~~~---~~~k~sK~~iL~~ai~y 62 (90)
|+.-||-.. ...-..|+.+|..|+.|
T Consensus 26 lgnsipksasrassraspkgfllnravqy 54 (54)
T 1pyv_A 26 LGNSIPKSASRASSRASPKGFLLNRAVQY 54 (54)
T ss_dssp GGGGTTTTSTTTSTTCSHHHHHHHHHHHC
T ss_pred hcccCcchhhhhhcccCccchhhhhhhcC
Confidence 455566442 23346799999999886
No 111
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=37.37 E-value=69 Score=19.39 Aligned_cols=26 Identities=4% Similarity=0.188 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 54 QILKKAADYIQFMRRKNASHQQDIDD 79 (90)
Q Consensus 54 ~iL~~ai~yIk~L~~~~~~l~~~~~~ 79 (90)
.|...+-.||..|...+..|+.+++.
T Consensus 33 ~l~~E~q~~v~ql~~~i~~Le~eL~e 58 (120)
T 3i00_A 33 NMKTESQRVVLQLKGHVSELEADLAE 58 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666544443
No 112
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=37.19 E-value=1e+02 Score=21.27 Aligned_cols=54 Identities=13% Similarity=0.201 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhcCCCC-CCccccc--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 29 HIKDSFSSLRDSVPSL-QGEKVAS--RA-QILKKAADYIQFMRRKNASHQQDIDDLKRQ 83 (90)
Q Consensus 29 ~i~~~~~~L~~llP~~-~~~~k~s--K~-~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~ 83 (90)
.++..+..|....|.. .+.. .+ .. ..+....+-|..|.+...+++.++..|...
T Consensus 71 k~~~~~~~L~~~~~~~~~~~~-~~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 71 QAEQSLTVVGLATVPSSKPFT-GSLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHTCCCCCCSSCCC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccccCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3556677777665543 2111 11 11 224444455555555555566666655555
No 113
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=36.48 E-value=91 Score=20.53 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 66 MRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 66 L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
|.+.+.....+++.|+.+++.|+.
T Consensus 32 L~~ql~~k~~ei~~L~~ql~sl~~ 55 (190)
T 4emc_A 32 LSEKLDTKATEIKQLQKQIDSLNA 55 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444555555555555543
No 114
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=36.38 E-value=67 Score=18.95 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 59 AADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 59 ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+-+-+..|..++..|+.+.+.|++++..|+.
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999998874
No 115
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=35.64 E-value=44 Score=20.13 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14769 64 QFMRRKNASHQQDIDDLKRQN 84 (90)
Q Consensus 64 k~L~~~~~~l~~~~~~L~~~~ 84 (90)
..|..++.+|+-|+..|++.+
T Consensus 11 EeLaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554443
No 116
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=35.54 E-value=55 Score=18.71 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=19.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhcCCCC
Q psy14769 17 AHHNALERKRRDHIKDSFSSLRDSVPSL 44 (90)
Q Consensus 17 ~~hn~~Er~RR~~i~~~~~~L~~llP~~ 44 (90)
..|...+-.+ ..+-.|++.++.+|-..
T Consensus 22 ~~~~Ls~~d~-arL~SCLd~iR~VlGds 48 (83)
T 1ufz_A 22 LNHQLSEIDQ-ARLYSCLDHMREVLGDA 48 (83)
T ss_dssp HHHHCCHHHH-HHHHHHHHHHHHHTTTT
T ss_pred ccccCCHHHH-HHHHHHHHHHHHHHccc
Confidence 4555555443 45789999999999765
No 117
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=35.36 E-value=35 Score=15.46 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 65 FMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 65 ~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
.|+.....++..+..|.+.++.|+
T Consensus 5 alekkcaalesklqalekkleale 28 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666776666664
No 118
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.93 E-value=43 Score=24.19 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
|..|+++..+++++++.++.++..|.
T Consensus 12 ~~~l~~~~~~l~~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 12 IAALKEKIAALKEKIKDTELGMKELN 37 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555443
No 119
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=34.66 E-value=63 Score=18.20 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+-|..|+++...++..++-|+...++|..
T Consensus 46 ~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 46 EMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888888888888888763
No 120
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.62 E-value=86 Score=19.88 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 55 ILKKAADYIQFMRRKNASHQQDIDDLKRQ 83 (90)
Q Consensus 55 iL~~ai~yIk~L~~~~~~l~~~~~~L~~~ 83 (90)
=|-.||++.-.|...+...+.+++.....
T Consensus 7 KLI~Ain~qs~LeD~L~~~R~el~~~~~r 35 (154)
T 2ocy_A 7 QLIESVDKQSHLEEQLNKSLKTIASQKAA 35 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 35567777777777776666666544433
No 121
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=34.24 E-value=65 Score=18.20 Aligned_cols=60 Identities=3% Similarity=0.200 Sum_probs=39.1
Q ss_pred HHHHHHHHhhcCCCCC-----Cc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 30 IKDSFSSLRDSVPSLQ-----GE--KVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 30 i~~~~~~L~~llP~~~-----~~--~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
......+|..+-|... |+ .+.++..++..--.-+..+......+..++..+..++..|+.
T Consensus 34 ~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 34 TQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667766655432 11 146777777766666777777777787777777777776654
No 122
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=34.22 E-value=52 Score=17.07 Aligned_cols=16 Identities=13% Similarity=0.194 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14769 66 MRRKNASHQQDIDDLK 81 (90)
Q Consensus 66 L~~~~~~l~~~~~~L~ 81 (90)
|-.++..|..++..|+
T Consensus 16 L~~kVdqLssdV~al~ 31 (52)
T 1jcd_A 16 ANAKADQASNDANAAR 31 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 123
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=34.04 E-value=68 Score=18.39 Aligned_cols=59 Identities=8% Similarity=0.136 Sum_probs=34.3
Q ss_pred HHHHHHHHhhcCCCCC-----Cc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 30 IKDSFSSLRDSVPSLQ-----GE--KVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 30 i~~~~~~L~~llP~~~-----~~--~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
+.....+|..+-|... |+ .+.++..++..--+-+..+......+..++..+..++..|+
T Consensus 39 ~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 39 AKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667766655432 11 14566666666555566666666666666666666655554
No 124
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=33.05 E-value=47 Score=21.91 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 64 QFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 64 k~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
..|+.++..|.++++....++..|
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L 46 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQL 46 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 125
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=32.64 E-value=1.3e+02 Score=21.22 Aligned_cols=29 Identities=21% Similarity=0.094 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 60 ADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 60 i~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
-.-|..|+.....++..+..|...+..|+
T Consensus 25 ~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 25 DAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677777777777777776666554
No 126
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=31.95 E-value=57 Score=16.83 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 65 FMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 65 ~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
.|.....+.+.++..|+.++..|
T Consensus 27 rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 27 KLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555666666666555
No 127
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.34 E-value=77 Score=18.15 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 53 AQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 53 ~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
..++...-.-+..+......+..++..+..++..|+.
T Consensus 63 ~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~ 99 (112)
T 1l8d_A 63 EELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDM 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777777777777777777776653
No 128
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=31.09 E-value=88 Score=18.75 Aligned_cols=25 Identities=8% Similarity=0.107 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
|..|+..+..++...+.|...+..|
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReL 61 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVREL 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 129
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=30.86 E-value=64 Score=17.43 Aligned_cols=20 Identities=5% Similarity=-0.130 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14769 61 DYIQFMRRKNASHQQDIDDL 80 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L 80 (90)
.||..|+..+..|+..+..|
T Consensus 45 ~~~~~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLI 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47788888877777666554
No 130
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=30.50 E-value=67 Score=20.46 Aligned_cols=27 Identities=15% Similarity=0.062 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 61 DYIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
..|..|+.+.......+..-+..+++|
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL 31 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQEL 31 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544444444444444433
No 131
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=30.46 E-value=82 Score=18.22 Aligned_cols=34 Identities=9% Similarity=-0.035 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 53 AQILKKAADYIQFMRRKNASHQQDIDDLKRQNAI 86 (90)
Q Consensus 53 ~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~ 86 (90)
-+++-.|++-|..+-.....+...++.|...+..
T Consensus 64 HsTV~ha~~ki~~~~~~d~~l~~~i~~l~~~l~~ 97 (101)
T 3pvv_A 64 HTTVMYAQRKILSEMAERREVFDHVKELTTRIRQ 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHh
Confidence 5677789999999999999999999999887654
No 132
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=30.33 E-value=66 Score=19.66 Aligned_cols=26 Identities=4% Similarity=0.065 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 60 ADYIQFMRRKNASHQQDIDDLKRQNA 85 (90)
Q Consensus 60 i~yIk~L~~~~~~l~~~~~~L~~~~~ 85 (90)
.+++..|.++..+++.....|...+.
T Consensus 101 ~~~~~~l~~~i~~L~~~~~~L~~~i~ 126 (148)
T 3gpv_A 101 KQQEANVLQLIQDTEKNLKKIQQKIA 126 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 133
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=29.53 E-value=68 Score=16.96 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 62 YIQFMRRKNASHQQDIDDLKRQN 84 (90)
Q Consensus 62 yIk~L~~~~~~l~~~~~~L~~~~ 84 (90)
-|..|+....+.+++++.|.+-+
T Consensus 26 kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 26 KIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777776644
No 134
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=29.51 E-value=81 Score=21.95 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 62 YIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 62 yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
.|..|+..++.|+.+++.|+++.+.+
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~ 211 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTA 211 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666666666665554443
No 135
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=29.38 E-value=98 Score=18.76 Aligned_cols=26 Identities=12% Similarity=0.057 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 60 ADYIQFMRRKNASHQQDIDDLKRQNA 85 (90)
Q Consensus 60 i~yIk~L~~~~~~l~~~~~~L~~~~~ 85 (90)
.+++..|.+...+++.....|...+.
T Consensus 87 ~~~~~~l~~~i~~L~~~~~~L~~~i~ 112 (142)
T 3gp4_A 87 KKQRIELKNRIDVMQEALDRLDFKID 112 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 136
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=29.16 E-value=25 Score=18.90 Aligned_cols=21 Identities=10% Similarity=0.276 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14769 60 ADYIQFMRRKNASHQQDIDDL 80 (90)
Q Consensus 60 i~yIk~L~~~~~~l~~~~~~L 80 (90)
..||..|+..+..|+..+..|
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 367788887777777655544
No 137
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=29.02 E-value=16 Score=24.75 Aligned_cols=9 Identities=44% Similarity=0.608 Sum_probs=3.9
Q ss_pred HHHHHHHHh
Q psy14769 80 LKRQNAILE 88 (90)
Q Consensus 80 L~~~~~~L~ 88 (90)
|+.|++.|+
T Consensus 48 l~~En~rLr 56 (255)
T 2j5u_A 48 LKKENKDLK 56 (255)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444443
No 138
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=28.68 E-value=72 Score=22.52 Aligned_cols=26 Identities=4% Similarity=0.084 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
|+.|+..+..+.+++..|...+..+.
T Consensus 30 I~~Lq~~le~L~~KI~~LE~~v~~q~ 55 (323)
T 1lwu_B 30 LRSMKSVLEHLRAKMQRMEEAIKTQK 55 (323)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777776665543
No 139
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=28.13 E-value=61 Score=19.80 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy14769 65 FMRRKNASHQQDIDD 79 (90)
Q Consensus 65 ~L~~~~~~l~~~~~~ 79 (90)
.|...++.|+.++..
T Consensus 20 ~l~~~~~~l~~~l~~ 34 (182)
T 3kqg_A 20 ALNTKIRALQGSLEN 34 (182)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 140
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=28.04 E-value=91 Score=17.93 Aligned_cols=29 Identities=3% Similarity=0.208 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 60 ADYIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 60 i~yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
+.-+..|......+..++..+..+...|.
T Consensus 24 ~~eL~~lEke~~~l~~el~~le~E~~~L~ 52 (96)
T 3q8t_A 24 IQELEDVEKNRKVVAENLEKVQAEAERLD 52 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555543
No 141
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=27.57 E-value=1e+02 Score=18.50 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=26.8
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 53 AQILKKAADY-IQFMRRKNASHQQDIDDLKRQNA 85 (90)
Q Consensus 53 ~~iL~~ai~y-Ik~L~~~~~~l~~~~~~L~~~~~ 85 (90)
..|+..|-.| .+.|.+...+.+.+++..+.+.+
T Consensus 23 ~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE 56 (119)
T 4efa_G 23 HEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKD 56 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888 88899999999999888877554
No 142
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=26.83 E-value=87 Score=17.32 Aligned_cols=26 Identities=8% Similarity=0.151 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 60 ADYIQFMRRKNASHQQDIDDLKRQNA 85 (90)
Q Consensus 60 i~yIk~L~~~~~~l~~~~~~L~~~~~ 85 (90)
..-++.++..+..|+..+..|+..++
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le 31 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLE 31 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34455555555555555555555443
No 143
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=26.47 E-value=92 Score=17.52 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 62 YIQFMRRKNASHQQDIDDLKRQNA 85 (90)
Q Consensus 62 yIk~L~~~~~~l~~~~~~L~~~~~ 85 (90)
-++.++..+..|+..+..|+..++
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le 37 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLE 37 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345555555555555555554443
No 144
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=25.97 E-value=1.1e+02 Score=18.32 Aligned_cols=6 Identities=33% Similarity=0.246 Sum_probs=2.7
Q ss_pred hcCCCC
Q psy14769 39 DSVPSL 44 (90)
Q Consensus 39 ~llP~~ 44 (90)
.+||..
T Consensus 13 ~~~~~~ 18 (110)
T 2v4h_A 13 GLVPRG 18 (110)
T ss_dssp CCCCTT
T ss_pred CCCcch
Confidence 345543
No 145
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=25.73 E-value=67 Score=17.72 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14769 61 DYIQFMRRKNASHQQDIDD 79 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~ 79 (90)
.||..|+..+..|+..+..
T Consensus 48 ~~~~~Le~rl~~le~~l~~ 66 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVLKE 66 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4778888777777665544
No 146
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=25.45 E-value=37 Score=15.47 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 65 FMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 65 ~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
.|++....+++....-.+.+..|+
T Consensus 4 aleqkiaaleqkcaaceqkiaale 27 (32)
T 4g1a_A 4 ALEQKIAALEQKCAACEQKIAALE 27 (32)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556555555555555554
No 147
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=25.37 E-value=1e+02 Score=17.57 Aligned_cols=57 Identities=12% Similarity=0.229 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy14769 28 DHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRR---KNASHQQDIDDLKRQNA 85 (90)
Q Consensus 28 ~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~---~~~~l~~~~~~L~~~~~ 85 (90)
..++..+..++.-.|.....+ +.=..-|.-|-+|++.-++ ....++.++..|...+.
T Consensus 33 ~~vd~~~~~i~~~~~~~~~~r-~~vmaALnladel~~~~~~~~~~~~~~~~~i~~L~~~le 92 (104)
T 1t3u_A 33 RYLDGKMREIRSSGKVIGADR-VAVMAALNITHDLLHRKERLDQESSSTRERVRELLDRVD 92 (104)
T ss_dssp HHHHHHHHHHHTTTCSCSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888889998877653222 3334444555555543332 13445555555555544
No 148
>3vea_B MATP, macrodomain TER protein; macrodomains, chromosome, DNA condensation; 2.55A {Yersinia pestis} PDB: 3veb_B 4d8j_B
Probab=25.35 E-value=1.3e+02 Score=18.91 Aligned_cols=35 Identities=9% Similarity=0.060 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 53 AQILKKAADYIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 53 ~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
..+|..||.|+-.=-...+.+..++..|++.+..|
T Consensus 112 ~~TLSetI~~li~eae~ke~y~~q~s~lK~dL~~l 146 (151)
T 3vea_B 112 GNTLSDTVVQLIEDAERKEKYASQMSSLKQDLKDI 146 (151)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899997766667777888898888887765
No 149
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=25.33 E-value=92 Score=22.17 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14769 61 DYIQFMRRKNASHQQDIDDLK 81 (90)
Q Consensus 61 ~yIk~L~~~~~~l~~~~~~L~ 81 (90)
+|+..|+++..++..+++.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~ 267 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKAL 267 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466666676666666666553
No 150
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=25.24 E-value=71 Score=19.77 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 66 MRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 66 L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
|-.+.+.+-++++.|-+++..|.
T Consensus 103 ~laqLe~ls~qL~~ls~~v~~L~ 125 (140)
T 3iyn_Q 103 LLAQLDSLTRELNVVSQQLLDLR 125 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 151
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=25.09 E-value=1.1e+02 Score=21.60 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769 62 YIQFMRRKNASHQQDIDDLKRQNAILE 88 (90)
Q Consensus 62 yIk~L~~~~~~l~~~~~~L~~~~~~L~ 88 (90)
-|..|+.....++.++..|...+..|+
T Consensus 19 ~i~~L~~~l~~~~~ki~~L~~~i~~l~ 45 (319)
T 1fzc_C 19 SIRYLQEIYNSNNQKIVNLKEKVAQLE 45 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666667777766665554
No 152
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=24.59 E-value=55 Score=14.23 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14769 54 QILKKAADYIQFMRRKNA 71 (90)
Q Consensus 54 ~iL~~ai~yIk~L~~~~~ 71 (90)
+-|-.|-.|+.+|....+
T Consensus 4 sgliearkyleqlhrklk 21 (26)
T 1xkm_B 4 SGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456667788877776543
No 153
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=24.56 E-value=1e+02 Score=19.87 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769 63 IQFMRRKNASHQQDIDDLKRQNAILEA 89 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~ 89 (90)
+..|+..+..|+.....|.+++..|+.
T Consensus 50 ~rELq~~~~~L~~~k~~Leke~~~LQa 76 (168)
T 3o0z_A 50 NRELQERNRILENSKSQTDKDYYQLQA 76 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555443
No 154
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=24.38 E-value=1.2e+02 Score=18.06 Aligned_cols=20 Identities=10% Similarity=0.127 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14769 62 YIQFMRRKNASHQQDIDDLK 81 (90)
Q Consensus 62 yIk~L~~~~~~l~~~~~~L~ 81 (90)
-|..|......+...++.|.
T Consensus 19 ei~~L~~ei~eLk~~ve~lE 38 (106)
T 4e61_A 19 TIGSLNEEIEQYKGTVSTLE 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 155
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.64 E-value=1.1e+02 Score=18.28 Aligned_cols=14 Identities=7% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCC
Q psy14769 31 KDSFSSLRDSVPSL 44 (90)
Q Consensus 31 ~~~~~~L~~llP~~ 44 (90)
+..|..|...+...
T Consensus 14 ~~K~eel~~~~~~~ 27 (129)
T 3tnu_B 14 QTKYEELQQTAGRH 27 (129)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHhh
Confidence 34556666655443
No 156
>2kt9_A Probable 30S ribosomal protein PSRP-3; structural genomics, northeast structural genomics consortium (NESG), target SGR46, PSI-2; NMR {Synechocystis SP}
Probab=23.60 E-value=29 Score=21.11 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=26.6
Q ss_pred HHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHH
Q psy14769 32 DSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRK 69 (90)
Q Consensus 32 ~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~ 69 (90)
++++.|+..+-+-+=-...+++.||..|.+-|.+=|+.
T Consensus 46 DAWe~LK~eLEsK~WIse~e~i~lLN~~TeiIN~WQe~ 83 (116)
T 2kt9_A 46 DAWQQLKDELEAKHWIAEADRINVLNQATEVINFWQDL 83 (116)
T ss_dssp CHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666664332122478899999999999998873
No 157
>2bid_A Protein (BID); programmed cell death, apoptosis regulation and amplification; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=23.58 E-value=1.6e+02 Score=19.34 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcc
Q psy14769 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEK 48 (90)
Q Consensus 13 ~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~ 48 (90)
...-.+++.+|-.||..+-...+.|-..+|.-.+..
T Consensus 112 a~qf~N~~lsEEdrr~~LAaaleql~Qt~P~DmeqE 147 (197)
T 2bid_A 112 ALQLRNTSRSEEDRNRDLATALEQLLQAYPRDMEKE 147 (197)
T ss_dssp HHHHHSGGGHHHHHHHHHHHHHHHHHTTSCCSSCSH
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHCCCcHhHH
Confidence 345678899999999999999999999999876443
No 158
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=22.03 E-value=1.7e+02 Score=18.95 Aligned_cols=33 Identities=9% Similarity=0.093 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 55 ILKKAADYIQFMRRKNASHQQDIDDLKRQNAIL 87 (90)
Q Consensus 55 iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L 87 (90)
++.-|..-+..|+..+..|+.++...+.+...+
T Consensus 129 li~~AertV~kLqkeiD~LEDeL~~eKek~k~i 161 (175)
T 3mud_A 129 LICYCLDTTAKNEKSIDDLEEKVAHAKEENLNM 161 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455557788888888887776666554443
No 159
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=21.86 E-value=59 Score=21.99 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14769 53 AQILKKAADYIQFMRRKNA 71 (90)
Q Consensus 53 ~~iL~~ai~yIk~L~~~~~ 71 (90)
..+|..-|+|+++=+....
T Consensus 123 ~~iLSalINF~~FRE~~~~ 141 (250)
T 2ve7_C 123 SRFLSGIINFIHFREACRE 141 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777777776555443
No 160
>1bgc_A Granulocyte colony-stimulating factor; cytokine; 1.70A {Bos taurus} SCOP: a.26.1.1 PDB: 1rhg_A 2d9q_A* 1cd9_A* 1pgr_A 1bge_A 1bgd_A 1gnc_A
Probab=21.48 E-value=1.4e+02 Score=19.26 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769 53 AQILKKAADYIQFMRRKNASHQQDIDD 79 (90)
Q Consensus 53 ~~iL~~ai~yIk~L~~~~~~l~~~~~~ 79 (90)
.+.|.+..+.|++++.+..+|++++-.
T Consensus 11 ~~fl~k~~e~ir~I~~~~~~L~kelC~ 37 (174)
T 1bgc_A 11 QSFLLKCLEQVRKIQADGAELQERLCA 37 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 456788999999999999999988754
No 161
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=21.47 E-value=1.3e+02 Score=18.18 Aligned_cols=20 Identities=5% Similarity=0.122 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14769 63 IQFMRRKNASHQQDIDDLKR 82 (90)
Q Consensus 63 Ik~L~~~~~~l~~~~~~L~~ 82 (90)
|..|+..+..|++++..|..
T Consensus 25 l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 25 LANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 66666666666666666554
No 162
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=21.28 E-value=96 Score=15.87 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14769 54 QILKKAADYIQFMRRKNASHQQ 75 (90)
Q Consensus 54 ~iL~~ai~yIk~L~~~~~~l~~ 75 (90)
.|+.-|++|...|.....+++.
T Consensus 28 Di~~Faa~YF~~L~~~~~~~~~ 49 (54)
T 2izy_A 28 DLVDFAVEYFTRLREARRGLEH 49 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhHHHHhh
Confidence 5788999999999887776654
No 163
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.12 E-value=1.4e+02 Score=17.61 Aligned_cols=11 Identities=18% Similarity=0.078 Sum_probs=5.0
Q ss_pred HHHHHHHHhhc
Q psy14769 30 IKDSFSSLRDS 40 (90)
Q Consensus 30 i~~~~~~L~~l 40 (90)
+..+++.|..+
T Consensus 34 ~~~~~e~l~~l 44 (133)
T 1fxk_C 34 LEILEKTLSDI 44 (133)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 34444444443
Done!