RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14769
(90 letters)
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 59.5 bits (144), Expect = 4e-14
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQ 74
KR HN LER+RR+ +K SF +LRD +P L+ + A + ILKKA YI ++ +
Sbjct: 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLI 65
Query: 75 QDIDDLKRQNAILEAQ 90
+ D L+++ L+ +
Sbjct: 66 SEEDLLRKRREQLKHK 81
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 59.1 bits (143), Expect = 5e-14
Identities = 66/77 (85%), Positives = 71/77 (92%), Gaps = 1/77 (1%)
Query: 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASH 73
+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA +YIQ+MRRKN +H
Sbjct: 1 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTH 59
Query: 74 QQDIDDLKRQNAILEAQ 90
QQDIDDLKRQNA+LE Q
Sbjct: 60 QQDIDDLKRQNALLEQQ 76
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 54.9 bits (132), Expect = 2e-12
Identities = 21/75 (28%), Positives = 36/75 (48%)
Query: 16 RAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQ 75
R+ HN +E+ RR H++ S L+ VP + +L KA +I+ + +
Sbjct: 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61
Query: 76 DIDDLKRQNAILEAQ 90
ID L+R+ L+ Q
Sbjct: 62 QIDQLQREQRHLKRQ 76
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 49.4 bits (118), Expect = 2e-10
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVA---SRAQILKKAADYIQFMRRKN 70
++RA HN +ER+RRD I + L +P E S+ IL KA+DYIQ +R+ N
Sbjct: 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63
Query: 71 A 71
Sbjct: 64 H 64
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 63
Score = 47.9 bits (114), Expect = 8e-10
Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKV----ASRAQILKKAADYIQFMRRKN 70
KR H E+ RR+ + + L +P+ ++ S+A ++ A YI+ +++
Sbjct: 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61
Query: 71 AS 72
++
Sbjct: 62 ST 63
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 68
Score = 46.0 bits (109), Expect = 5e-09
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 11 ESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRK 69
+A++R ER+R + ++F +L+ S S + + +IL+ A YI+ ++
Sbjct: 8 TNADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQAL 65
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 41.6 bits (98), Expect = 2e-07
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 27 RDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNA 85
R I D L+D V + ++ +L+KA DYI+++++ N +Q+ LK N
Sbjct: 1 RSSINDKIIELKDLVMG--TDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQ 57
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId:
9606]}
Length = 80
Score = 41.9 bits (98), Expect = 3e-07
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNAS 72
EKR HNA+E++ R I D L+D V + +++ +L+KA DYI+F++ N
Sbjct: 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTE--AKLNKSAVLRKAIDYIRFLQHSNQK 61
Query: 73 HQQDIDDLKRQNAILE 88
+Q+ L+ +
Sbjct: 62 LKQENLSLRTAVHKSK 77
>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Streptococcus mutans [TaxId: 1309]}
Length = 474
Score = 25.2 bits (54), Expect = 1.2
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 27 RDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQ 64
+ + ++S + + P+ + RA L K AD +
Sbjct: 38 TEEVDYVYASAKKAQPAWRALSYIERAAYLHKVADILM 75
>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 446
Score = 25.3 bits (54), Expect = 1.3
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 30 IKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQ 64
I D+ R++ S + + R Q L+ I
Sbjct: 2 ISDTVKRAREAFNSGKTRSLQFRIQQLEALQRMIN 36
>d1m47a_ a.26.1.2 (A:) Interleukin-2 (IL-2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 128
Score = 24.0 bits (52), Expect = 2.5
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 29 HIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRR 68
+D S++ V L+G + + + A ++F+ R
Sbjct: 76 RPRDLISNINVIVLELKGSETTFMCEYADETATIVEFLNR 115
>d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase
YdcW {Escherichia coli [TaxId: 562]}
Length = 474
Score = 24.0 bits (51), Expect = 3.3
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 27 RDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQ 64
+ + + + + RA+ L K AD I+
Sbjct: 38 AEQVDAAVRAADAAFAEWGQTTPKVRAECLLKLADVIE 75
>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Baltic cod (Gadus callarias) [TaxId: 8053]}
Length = 503
Score = 23.5 bits (50), Expect = 4.9
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 49 VASRAQILKKAADYIQ 64
R++++ +AA I+
Sbjct: 79 GIERSRVMLEAARIIR 94
>d1ky8a_ c.82.1.1 (A:) Non-phosphorylating
glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon
Thermoproteus tenax [TaxId: 2271]}
Length = 499
Score = 23.8 bits (50), Expect = 5.0
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 49 VASRAQILKKAADYIQ 64
R +L+KAAD I+
Sbjct: 74 GTERLAVLRKAADIIE 89
>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Sheep (Ovis aries) [TaxId: 9940]}
Length = 494
Score = 23.4 bits (50), Expect = 5.5
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 49 VASRAQILKKAADYIQ 64
+ R ++L K AD I+
Sbjct: 75 ASERGRLLNKLADLIE 90
>d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 300
Score = 23.2 bits (49), Expect = 6.1
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 43 SLQGEKVASRAQILKKAADYIQFMRRK 69
+L + A A++L +A YI+ K
Sbjct: 1 TLSRDDAAQVAKVLSEALPYIRRFVGK 27
>d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Vibrio harveyi [TaxId: 669]}
Length = 504
Score = 23.5 bits (49), Expect = 6.2
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 49 VASRAQILKKAADYIQ 64
+ RA +L+ A ++
Sbjct: 47 NSKRASLLRTIASELE 62
>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 494
Score = 23.0 bits (49), Expect = 6.6
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 49 VASRAQILKKAADYIQ 64
+ R ++L + AD I+
Sbjct: 75 ASHRGRLLNRLADLIE 90
>d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 291
Score = 22.9 bits (48), Expect = 8.3
Identities = 5/18 (27%), Positives = 12/18 (66%)
Query: 52 RAQILKKAADYIQFMRRK 69
+AQ+L +A +++ + K
Sbjct: 9 KAQVLAEALPWLKQLHGK 26
>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 414
Score = 22.7 bits (47), Expect = 9.6
Identities = 6/37 (16%), Positives = 17/37 (45%)
Query: 28 DHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQ 64
D + + +R++ L+ + + +KK A+ +
Sbjct: 1 DELLEKAKKVREAWDVLRNATTREKNKAIKKIAEKLD 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.127 0.336
Gapped
Lambda K H
0.267 0.0501 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 312,484
Number of extensions: 11884
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 25
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 47 (22.4 bits)