Query psy14770
Match_columns 77
No_of_seqs 102 out of 204
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 20:11:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14770.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14770hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nlw_A MAD protein, MAX dimeri 99.7 5.4E-17 1.8E-21 102.0 5.6 51 15-69 1-52 (80)
2 1nkp_A C-MYC, MYC proto-oncoge 99.7 4.9E-17 1.7E-21 103.5 5.5 52 10-61 1-53 (88)
3 1hlo_A Protein (transcription 99.6 2.2E-15 7.5E-20 93.5 5.9 53 10-62 7-59 (80)
4 3u5v_A Protein MAX, transcript 99.6 4.7E-16 1.6E-20 97.2 2.2 50 12-61 2-53 (76)
5 1nkp_B MAX protein, MYC proto- 99.6 4.2E-15 1.4E-19 92.5 5.2 49 14-62 1-49 (83)
6 1an4_A Protein (upstream stimu 99.5 4.1E-15 1.4E-19 88.9 1.2 49 13-61 3-55 (65)
7 1am9_A Srebp-1A, protein (ster 99.5 1.1E-13 3.8E-18 86.6 6.0 51 12-63 3-53 (82)
8 1mdy_A Protein (MYOD BHLH doma 99.5 1.6E-13 5.4E-18 84.3 6.4 54 12-69 9-62 (68)
9 4ati_A MITF, microphthalmia-as 99.4 2.6E-13 8.7E-18 90.2 5.2 53 12-64 24-78 (118)
10 4h10_B Circadian locomoter out 99.4 6.6E-13 2.3E-17 82.4 6.7 52 9-61 2-53 (71)
11 1a0a_A BHLH, protein (phosphat 99.3 1.9E-13 6.6E-18 82.4 1.6 51 15-69 2-57 (63)
12 2ql2_B Neurod1, neurogenic dif 99.3 3.7E-12 1.3E-16 76.3 6.1 52 14-69 1-53 (60)
13 4h10_A ARYL hydrocarbon recept 99.3 2.8E-12 9.6E-17 79.6 4.1 55 12-70 6-62 (73)
14 4f3l_A Mclock, circadian locom 98.8 5.4E-09 1.8E-13 76.8 4.8 52 9-61 6-57 (361)
15 2lfh_A DNA-binding protein inh 98.6 9E-09 3.1E-13 63.7 2.2 46 20-69 19-65 (68)
16 4f3l_B BMAL1B; BHLH, PAS, circ 98.5 3.3E-08 1.1E-12 73.6 3.2 57 10-66 8-66 (387)
17 4aya_A DNA-binding protein inh 98.0 8.2E-06 2.8E-10 53.2 4.7 43 23-69 33-76 (97)
18 4ath_A MITF, microphthalmia-as 97.8 3.6E-05 1.2E-09 49.0 4.7 36 27-62 4-41 (83)
19 3muj_A Transcription factor CO 83.4 1.6 5.4E-05 29.7 4.3 34 29-62 95-130 (138)
20 3mlp_A Transcription factor CO 36.5 7.1 0.00024 30.6 -0.1 35 30-64 322-358 (402)
21 3mab_A Uncharacterized protein 28.0 24 0.00082 21.8 1.3 20 20-39 68-87 (93)
No 1
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.68 E-value=5.4e-17 Score=102.02 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=45.0
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHhhhCCCCC-CCCcchhHHHHHhhhhhhhhhhhe
Q psy14770 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQ-GEKVEVPGSHVDTLDQGFWYKGTR 69 (77)
Q Consensus 15 kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~-~~KaSk~~IL~ktld~~~~~~~~~ 69 (77)
+|.+||.+||+||++||+||+.|++.||.+. +.|+||+.||.+|++ ||.++
T Consensus 1 ~R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~----yI~~L 52 (80)
T 1nlw_A 1 SRSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKL----HIKKL 52 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHH----HHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHH----HHHHH
Confidence 4899999999999999999999999999995 689999999888776 55543
No 2
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.67 E-value=4.9e-17 Score=103.52 Aligned_cols=52 Identities=37% Similarity=0.455 Sum_probs=47.6
Q ss_pred cccHHHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCC-CCCcchhHHHHHhhhh
Q psy14770 10 IESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQ-GEKVEVPGSHVDTLDQ 61 (77)
Q Consensus 10 ~e~~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~-~~KaSk~~IL~ktld~ 61 (77)
+|+.++|.+||.+||+||+.|+.+|+.|++.||++. +.|.||+.||.+|++|
T Consensus 1 ~ed~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~Y 53 (88)
T 1nkp_A 1 GHMNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAY 53 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHH
T ss_pred CCChhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Confidence 367889999999999999999999999999999996 6899999999888764
No 3
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.58 E-value=2.2e-15 Score=93.51 Aligned_cols=53 Identities=64% Similarity=0.795 Sum_probs=48.4
Q ss_pred cccHHHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHhhhhh
Q psy14770 10 IESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQG 62 (77)
Q Consensus 10 ~e~~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~~~KaSk~~IL~ktld~~ 62 (77)
.++..+|.+||..||+||..|+.+|+.|+..||.+.+.|.||+.||.+|++|-
T Consensus 7 ~~~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI 59 (80)
T 1hlo_A 7 ESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYI 59 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHH
T ss_pred cchHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999998887743
No 4
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.58 E-value=4.7e-16 Score=97.24 Aligned_cols=50 Identities=38% Similarity=0.502 Sum_probs=38.7
Q ss_pred cHHHHHHhHHHHHhhHHHHHHHHHHHhhhCCC-CCCCCc-chhHHHHHhhhh
Q psy14770 12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPS-LQGEKV-EVPGSHVDTLDQ 61 (77)
Q Consensus 12 ~~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~-l~~~Ka-Sk~~IL~ktld~ 61 (77)
+.++|.+||+.||+||..|+.+|+.|++.||. ..++|+ ||+.||.+|++|
T Consensus 2 ~~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieY 53 (76)
T 3u5v_A 2 GADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQV 53 (76)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_pred chhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHH
Confidence 46799999999999999999999999999995 567887 899998877763
No 5
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.55 E-value=4.2e-15 Score=92.52 Aligned_cols=49 Identities=67% Similarity=0.857 Sum_probs=45.4
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHhhhhh
Q psy14770 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQG 62 (77)
Q Consensus 14 ~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~~~KaSk~~IL~ktld~~ 62 (77)
++|.+||..||+||+.|+.+|+.|++.||++.+.|.||+.||.+|++|-
T Consensus 1 ~rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI 49 (83)
T 1nkp_B 1 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYI 49 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHH
T ss_pred ChhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Confidence 3799999999999999999999999999999999999999998888743
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.49 E-value=4.1e-15 Score=88.92 Aligned_cols=49 Identities=29% Similarity=0.410 Sum_probs=43.6
Q ss_pred HHHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCCC----CCcchhHHHHHhhhh
Q psy14770 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQG----EKVEVPGSHVDTLDQ 61 (77)
Q Consensus 13 ~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~~----~KaSk~~IL~ktld~ 61 (77)
..+|.+||.+||+||+.|+.+|..|+.+||.+.. .|.+|+.||.+|++|
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~Y 55 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDY 55 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHH
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999975 388999998877764
No 7
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.46 E-value=1.1e-13 Score=86.62 Aligned_cols=51 Identities=29% Similarity=0.370 Sum_probs=45.5
Q ss_pred cHHHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHhhhhhh
Q psy14770 12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQGF 63 (77)
Q Consensus 12 ~~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~~~KaSk~~IL~ktld~~~ 63 (77)
+..+|.+||..||+||+.|+.+|..|++.||+. +.|.+|+.||.+|++|--
T Consensus 3 ~~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~-~~k~~Ka~IL~~Ai~YI~ 53 (82)
T 1am9_A 3 RGEKRTAHNAIEKRYRSSINDKIIELKDLVVGT-EAKLNKSAVLRKAIDYIR 53 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-SCCCCHHHHHHHHHHHHH
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHhccCC-CCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999999999985 579999999988887543
No 8
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.45 E-value=1.6e-13 Score=84.27 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=47.2
Q ss_pred cHHHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHhhhhhhhhhhhe
Q psy14770 12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQGFWYKGTR 69 (77)
Q Consensus 12 ~~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~~~KaSk~~IL~ktld~~~~~~~~~ 69 (77)
+..+|..||+.||+|+..|+.+|+.|++.||...+.|.||+.||..|++ ||..+
T Consensus 9 ~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~----YI~~L 62 (68)
T 1mdy_A 9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIR----YIEGL 62 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHH----HHHHH
T ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHH----HHHHH
Confidence 4678999999999999999999999999999988899999987777665 66544
No 9
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.40 E-value=2.6e-13 Score=90.16 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=40.2
Q ss_pred cHHHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCCC--CCcchhHHHHHhhhhhhh
Q psy14770 12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQG--EKVEVPGSHVDTLDQGFW 64 (77)
Q Consensus 12 ~~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~~--~KaSk~~IL~ktld~~~~ 64 (77)
+..+|.+||.+||+||+.|+.+|..|++.||++.+ .|.+|+.||.+|++|--+
T Consensus 24 ~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~ 78 (118)
T 4ati_A 24 ERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRK 78 (118)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999974 599999999888875433
No 10
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.40 E-value=6.6e-13 Score=82.42 Aligned_cols=52 Identities=25% Similarity=0.336 Sum_probs=45.2
Q ss_pred ccccHHHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHhhhh
Q psy14770 9 DIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQ 61 (77)
Q Consensus 9 ~~e~~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~~~KaSk~~IL~ktld~ 61 (77)
|..+..+|.+||.+||+||+.|+.+|.+|+..||+. +.|.+|+.||++||+|
T Consensus 2 d~k~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~-~~K~dK~sIL~~aI~y 53 (71)
T 4h10_B 2 DDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGN-ARKMDKSTVLQKSIDF 53 (71)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSC-CSCCCHHHHHHHHHHH
T ss_pred ChhhhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCC-CCCCcHHHHHHHHHHH
Confidence 455678999999999999999999999999999952 4699999999999874
No 11
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.34 E-value=1.9e-13 Score=82.42 Aligned_cols=51 Identities=18% Similarity=0.226 Sum_probs=43.9
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHhhhCCCCC-----CCCcchhHHHHHhhhhhhhhhhhe
Q psy14770 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQ-----GEKVEVPGSHVDTLDQGFWYKGTR 69 (77)
Q Consensus 15 kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~-----~~KaSk~~IL~ktld~~~~~~~~~ 69 (77)
+|.+|+..||+||+-|+.+|.+|+.+||++. +.+.||+.||+.|++ ||.++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~----YIk~L 57 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACR----YIRHL 57 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHH----HHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHH----HHHHH
Confidence 5789999999999999999999999999873 368999988877765 66655
No 12
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.32 E-value=3.7e-12 Score=76.33 Aligned_cols=52 Identities=23% Similarity=0.285 Sum_probs=44.6
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCC-CCCcchhHHHHHhhhhhhhhhhhe
Q psy14770 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQ-GEKVEVPGSHVDTLDQGFWYKGTR 69 (77)
Q Consensus 14 ~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~-~~KaSk~~IL~ktld~~~~~~~~~ 69 (77)
++|..||+.||+|+..|+.+|+.|++.||.+. +.|.||+.+|..|++ ||..+
T Consensus 1 ~rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~----YI~~L 53 (60)
T 2ql2_B 1 SRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKN----YIWAL 53 (60)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHH----HHHHH
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHH----HHHHH
Confidence 37899999999999999999999999999997 589999977766665 66544
No 13
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.28 E-value=2.8e-12 Score=79.57 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=48.3
Q ss_pred cHHHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCC--CCCcchhHHHHHhhhhhhhhhhhee
Q psy14770 12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQ--GEKVEVPGSHVDTLDQGFWYKGTRK 70 (77)
Q Consensus 12 ~~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~--~~KaSk~~IL~ktld~~~~~~~~~~ 70 (77)
-..+|.+||.+||+||+.|+.+|.+|+..||.+. ..|..|+.||+.|++ |+.+++
T Consensus 6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~----ylk~l~ 62 (73)
T 4h10_A 6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQ----HMKTLR 62 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHH----HHHHHS
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHH----HHHHHh
Confidence 3568999999999999999999999999999985 369999999988876 666665
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.78 E-value=5.4e-09 Score=76.83 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=35.7
Q ss_pred ccccHHHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHhhhh
Q psy14770 9 DIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQ 61 (77)
Q Consensus 9 ~~e~~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~~~KaSk~~IL~ktld~ 61 (77)
+..+..+|..||..||+||+.|+..|.+|+..||. ...|..|+.||+.||+|
T Consensus 6 ~~~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~-~~~~~dk~~il~~~~~~ 57 (361)
T 4f3l_A 6 DDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPG-NARKMDKSTVLQKSIDF 57 (361)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTCCS-SSCCCCHHHHHHHHHHH
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCC-CCCCcCHHHHHHHHHHH
Confidence 33456799999999999999999999999999992 34699999999999985
No 15
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.65 E-value=9e-09 Score=63.68 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=37.8
Q ss_pred HHHHHhhHHHHHHHHHHHhhhCCCCC-CCCcchhHHHHHhhhhhhhhhhhe
Q psy14770 20 NALERKRRDHIKDSFSSLRDSVPSLQ-GEKVEVPGSHVDTLDQGFWYKGTR 69 (77)
Q Consensus 20 N~lERkRR~~ik~~F~~Lr~~VP~l~-~~KaSk~~IL~ktld~~~~~~~~~ 69 (77)
|.-||+|...|+.+|+.||..||++. +.|.||..+|+.+++ ||..+
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~----YI~~L 65 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVID----YILDL 65 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHH----HHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHH----HHHHH
Confidence 34589999999999999999999996 579999977766665 66654
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.55 E-value=3.3e-08 Score=73.65 Aligned_cols=57 Identities=18% Similarity=0.235 Sum_probs=47.4
Q ss_pred cccHHHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCC--CCCcchhHHHHHhhhhhhhhh
Q psy14770 10 IESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQ--GEKVEVPGSHVDTLDQGFWYK 66 (77)
Q Consensus 10 ~e~~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~--~~KaSk~~IL~ktld~~~~~~ 66 (77)
.....+|.+||..||+||+.|+..|.+|+..||... ..|..|+.||+.||+|--..+
T Consensus 8 ~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~ 66 (387)
T 4f3l_B 8 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 66 (387)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHH
T ss_pred chhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhh
Confidence 334568999999999999999999999999999875 479999999999998654433
No 17
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.99 E-value=8.2e-06 Score=53.17 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=34.4
Q ss_pred HHhhHHHHHHHHHHHhhhCCCCC-CCCcchhHHHHHhhhhhhhhhhhe
Q psy14770 23 ERKRRDHIKDSFSSLRDSVPSLQ-GEKVEVPGSHVDTLDQGFWYKGTR 69 (77)
Q Consensus 23 ERkRR~~ik~~F~~Lr~~VP~l~-~~KaSk~~IL~ktld~~~~~~~~~ 69 (77)
|+.|-..++.+|+.||..||++. +.|.||..+|+.+ +.||..+
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlA----i~YI~~L 76 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHV----IDYILDL 76 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHH----HHHHHHH
Confidence 46788899999999999999985 5799999666555 4566554
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=97.76 E-value=3.6e-05 Score=48.97 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhhCCCCCC--CCcchhHHHHHhhhhh
Q psy14770 27 RDHIKDSFSSLRDSVPSLQG--EKVEVPGSHVDTLDQG 62 (77)
Q Consensus 27 R~~ik~~F~~Lr~~VP~l~~--~KaSk~~IL~ktld~~ 62 (77)
|..|++++.+|...||.+.+ .|.+|++||.+++||-
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI 41 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYI 41 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHH
Confidence 78899999999999999853 6999999999998853
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=83.44 E-value=1.6 Score=29.74 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhCCCCCC--CCcchhHHHHHhhhhh
Q psy14770 29 HIKDSFSSLRDSVPSLQG--EKVEVPGSHVDTLDQG 62 (77)
Q Consensus 29 ~ik~~F~~Lr~~VP~l~~--~KaSk~~IL~ktld~~ 62 (77)
.|--+|+.|.+.||---+ ++.+|-.||+++.|-+
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~ 130 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLV 130 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHH
Confidence 467799999999999875 7999999999999865
No 20
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=36.48 E-value=7.1 Score=30.60 Aligned_cols=35 Identities=20% Similarity=0.166 Sum_probs=21.9
Q ss_pred HHHHHHHHhhhCCCCCC--CCcchhHHHHHhhhhhhh
Q psy14770 30 IKDSFSSLRDSVPSLQG--EKVEVPGSHVDTLDQGFW 64 (77)
Q Consensus 30 ik~~F~~Lr~~VP~l~~--~KaSk~~IL~ktld~~~~ 64 (77)
|--+|+.|.+.||---+ ++.+|-.||+++.|-+=-
T Consensus 322 IdygfqRLqK~iPrhpGdpErLpKevilkRaadl~ea 358 (402)
T 3mlp_A 322 IDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEA 358 (402)
T ss_dssp TTTTTTTTTTC-----------CHHHHHHHHHHHHHH
T ss_pred cccchhhhcccCCCCCCChHhChHHHHHHHHHHHHHH
Confidence 45689999999999875 799999999999996643
No 21
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=28.00 E-value=24 Score=21.85 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=17.6
Q ss_pred HHHHHhhHHHHHHHHHHHhh
Q psy14770 20 NALERKRRDHIKDSFSSLRD 39 (77)
Q Consensus 20 N~lERkRR~~ik~~F~~Lr~ 39 (77)
+.+...||.+|+..|+.|..
T Consensus 68 ~~l~~~~K~~L~~~~~~lk~ 87 (93)
T 3mab_A 68 HGLDEAKKIELKKFHQSLEG 87 (93)
T ss_dssp GGSCHHHHHHHHHHHHHHCC
T ss_pred HHCCHHHHHHHHHHHHHhhc
Confidence 67788899999999999875
Done!