RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14770
(77 letters)
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA,
BHLHZ, heterodimer, transcription/DNA complex; 1.80A
{Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A
1nlw_B
Length = 83
Score = 61.6 bits (150), Expect = 1e-14
Identities = 33/35 (94%), Positives = 34/35 (97%)
Query: 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEK 48
+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK
Sbjct: 1 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK 35
>1hlo_A Protein (transcription factor MAX); transcriptional regulation,
DNA binding, complex (transcription factor MAX/DNA),
transcription/DNA complex; HET: DNA; 2.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 80
Score = 60.8 bits (148), Expect = 2e-14
Identities = 34/36 (94%), Positives = 35/36 (97%)
Query: 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEK 48
A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK
Sbjct: 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK 45
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 88
Score = 57.0 bits (138), Expect = 6e-13
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 11 ESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQ 45
KR HN LER+RR+ +K SF +LRD +P L+
Sbjct: 2 HMNVKRRTHNVLERQRRNELKRSFFALRDQIPELE 36
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A);
basic-helix-loop- helix-leucine zipper, transcription
factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1
PDB: 1ukl_C
Length = 82
Score = 52.4 bits (126), Expect = 4e-11
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEK 48
EKR HNA+E++ R I D L+D V + +
Sbjct: 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKL 39
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ,
transcription/DNA complex; 2.00A {Homo sapiens} SCOP:
a.38.1.1
Length = 80
Score = 50.6 bits (121), Expect = 2e-10
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 16 RAHHNALERKRRDHIKDSFSSLRDSVPSLQGEK 48
R+ HN +E+ RR H++ S L+ VP
Sbjct: 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSS 34
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex,
double helix, overhanging base, transcription/DNA
complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Length = 65
Score = 50.4 bits (121), Expect = 2e-10
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVE 50
++RA HN +ER+RRD I + L +P E +
Sbjct: 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTK 40
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic
helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB:
2ql2_A*
Length = 76
Score = 40.3 bits (94), Expect = 2e-06
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 12 SAEKRAHHNALERKRRDHIKDSFSSL-RDSVPSLQGEKVEVPGSHVDTLDQGFWY 65
A+KRAHHNALERKRR I ++F L R L+ +K + + L Q
Sbjct: 2 GADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDK---AQTKLLILQQAVQV 53
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex,
transcription/DNA complex; HET: DNA; 2.80A {Mus
musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Length = 68
Score = 33.1 bits (76), Expect = 0.001
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTL 59
+A++R ER+R + ++F +L+ S S +++ V+ L
Sbjct: 9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRL----PKVEIL 52
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.002
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 7/26 (26%)
Query: 23 ERKRRDHIKDSFSSLR----DSVPSL 44
E++ +K +SL+ DS P+L
Sbjct: 18 EKQA---LKKLQASLKLYADDSAPAL 40
>2ql2_B Neurod1, neurogenic differentiation factor 1;
basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Length = 60
Score = 31.1 bits (71), Expect = 0.006
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEK 48
+R NA ER R + + +LR VP +
Sbjct: 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQ 35
>1a0a_A BHLH, protein (phosphate system positive regulatory protein
PHO4); transcription factor, basic helix loop helix;
HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP:
a.38.1.1
Length = 63
Score = 27.5 bits (61), Expect = 0.14
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEV 51
KR H E+ RR+ + + L +P+ ++
Sbjct: 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVS 38
>2o8g_I IPP-2, protein phosphatase inhibitor 2; hydrolase-inhibitor comple;
2.50A {Mus musculus} PDB: 2o8a_I
Length = 206
Score = 24.8 bits (53), Expect = 3.7
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 2 SDDERDYDIESAEKRAHHNALERKRRDH 29
+ + S E+R E KR+ H
Sbjct: 121 ESSGEEDNDLSPEEREKKRQFEMKRKLH 148
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH,
PAS, circadian rhythm proteins, transcription-activato;
2.27A {Mus musculus}
Length = 361
Score = 24.1 bits (52), Expect = 4.9
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 15 KRAHHNALERKRRDHIKDSFSSLRDSVPS 43
KR N E+KRRD L +P
Sbjct: 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPG 40
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann
fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella
typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Length = 180
Score = 23.6 bits (51), Expect = 9.5
Identities = 6/24 (25%), Positives = 9/24 (37%), Gaps = 4/24 (16%)
Query: 6 RDYDIESAEKRAHHNALERKRRDH 29
+ D E A + HH + R
Sbjct: 33 QILDDEMAARIQHH----KDGRPA 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.390
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,184,986
Number of extensions: 53093
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 15
Length of query: 77
Length of database: 6,701,793
Length adjustment: 46
Effective length of query: 31
Effective length of database: 5,417,427
Effective search space: 167940237
Effective search space used: 167940237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)