RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14770
         (77 letters)



>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 65

 Score = 47.8 bits (114), Expect = 5e-10
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQ 61
          ++RA HN +ER+RRD I +    L   +P    E  +   S    L +
Sbjct: 4  KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSK 51


>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 83

 Score = 46.0 bits (109), Expect = 4e-09
 Identities = 33/35 (94%), Positives = 34/35 (97%)

Query: 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEK 48
          +KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK
Sbjct: 1  DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK 35


>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 63

 Score = 44.5 bits (105), Expect = 1e-08
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPG-SHVDTLDQGFWY 65
          KR  H   E+ RR+ +  +   L   +P+   ++      S   T++    Y
Sbjct: 2  KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRY 53


>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 88

 Score = 43.4 bits (102), Expect = 5e-08
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQ 61
          KR  HN LER+RR+ +K SF +LRD +P L+  +       V  L +
Sbjct: 6  KRRTHNVLERQRRNELKRSFFALRDQIPELENNE---KAPKVVILKK 49


>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 68

 Score = 42.2 bits (99), Expect = 1e-07
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 11 ESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQG 46
           +A++R      ER+R   + ++F +L+ S  S   
Sbjct: 8  TNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPN 43


>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 79

 Score = 39.5 bits (92), Expect = 1e-06
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 16 RAHHNALERKRRDHIKDSFSSLRDSVPSLQGEK 48
          R+ HN +E+ RR H++ S   L+  VP      
Sbjct: 2  RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSS 34


>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 80

 Score = 37.6 bits (87), Expect = 7e-06
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQG 46
           EKR  HNA+E++ R  I D    L+D V   + 
Sbjct: 4  GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEA 37


>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 61

 Score = 25.5 bits (56), Expect = 0.34
 Identities = 6/20 (30%), Positives = 7/20 (35%)

Query: 27 RDHIKDSFSSLRDSVPSLQG 46
          R  I D    L+D V     
Sbjct: 1  RSSINDKIIELKDLVMGTDA 20


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 281,477
Number of extensions: 10142
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 9
Length of query: 77
Length of database: 2,407,596
Length adjustment: 44
Effective length of query: 33
Effective length of database: 1,803,476
Effective search space: 59514708
Effective search space used: 59514708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)