BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14771
         (64 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
           Gtp-Gdp
          Length = 310

 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 13/57 (22%)

Query: 1   MDGDEVLLFERATFLVISHCQRKEHRDIH-------------RFEKISNIIKQFKLS 44
           M+  E++LFER TFLVI     +   + H             RFEKISNI+K FK S
Sbjct: 200 MNALEIILFERTTFLVICSSNGENSNENHDSSDNNNVLLDPKRFEKISNIMKNFKQS 256


>pdb|3R7W|A Chain A, Crystal Structure Of Gtr1p-Gtr2p Complex
 pdb|3R7W|C Chain C, Crystal Structure Of Gtr1p-Gtr2p Complex
          Length = 307

 Score = 37.7 bits (86), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 13/53 (24%)

Query: 5   EVLLFERATFLVISHCQRKEHRDIH-------------RFEKISNIIKQFKLS 44
           E++LFER TFLVI     +   + H             RFEKISNI K FK S
Sbjct: 201 EIILFERTTFLVICSSNGENSNENHDSSDNNNVLLDPKRFEKISNIXKNFKQS 253


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.138    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,736,929
Number of Sequences: 62578
Number of extensions: 46412
Number of successful extensions: 188
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 184
Number of HSP's gapped (non-prelim): 2
length of query: 64
length of database: 14,973,337
effective HSP length: 35
effective length of query: 29
effective length of database: 12,783,107
effective search space: 370710103
effective search space used: 370710103
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)