BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14771
(64 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q63486|RRAGA_RAT Ras-related GTP-binding protein A OS=Rattus norvegicus GN=Rraga
PE=1 SV=1
Length = 313
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 42/53 (79%)
Query: 1 MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWLPRFIQ 53
++ DEVLLFERATFLVISH Q KE RD+HRFEKISNIIKQFKLS L Q
Sbjct: 198 IEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQ 250
>sp|Q80X95|RRAGA_MOUSE Ras-related GTP-binding protein A OS=Mus musculus GN=Rraga PE=2
SV=1
Length = 313
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 42/53 (79%)
Query: 1 MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWLPRFIQ 53
++ DEVLLFERATFLVISH Q KE RD+HRFEKISNIIKQFKLS L Q
Sbjct: 198 IEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQ 250
>sp|Q7L523|RRAGA_HUMAN Ras-related GTP-binding protein A OS=Homo sapiens GN=RRAGA PE=1
SV=1
Length = 313
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 42/53 (79%)
Query: 1 MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWLPRFIQ 53
++ DEVLLFERATFLVISH Q KE RD+HRFEKISNIIKQFKLS L Q
Sbjct: 198 IEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQ 250
>sp|Q3SX43|RRAGA_BOVIN Ras-related GTP-binding protein A OS=Bos taurus GN=RRAGA PE=2 SV=1
Length = 313
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 42/53 (79%)
Query: 1 MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWLPRFIQ 53
++ DEVLLFERATFLVISH Q KE RD+HRFEKISNIIKQFKLS L Q
Sbjct: 198 IEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQ 250
>sp|Q63487|RRAGB_RAT Ras-related GTP-binding protein B OS=Rattus norvegicus GN=RragB
PE=1 SV=1
Length = 374
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 41/53 (77%)
Query: 1 MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWLPRFIQ 53
++ DEVLLFERATFLVISH Q KE RD HRFEKISNIIKQFKLS L Q
Sbjct: 259 IEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQ 311
>sp|Q6NTA4|RRAGB_MOUSE Ras-related GTP-binding protein B OS=Mus musculus GN=Rragb PE=2
SV=1
Length = 374
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 41/53 (77%)
Query: 1 MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWLPRFIQ 53
++ DEVLLFERATFLVISH Q KE RD HRFEKISNIIKQFKLS L Q
Sbjct: 259 IEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQ 311
>sp|Q5VZM2|RRAGB_HUMAN Ras-related GTP-binding protein B OS=Homo sapiens GN=RRAGB PE=1
SV=1
Length = 374
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 41/53 (77%)
Query: 1 MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWLPRFIQ 53
++ DEVLLFERATFLVISH Q KE RD HRFEKISNIIKQFKLS L Q
Sbjct: 259 IEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQ 311
>sp|Q54IK1|RRAGA_DICDI Ras-related GTP-binding protein A OS=Dictyostelium discoideum
GN=ragA PE=2 SV=1
Length = 301
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 2 DGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLS 44
+ DEV+LFE+ATFLVISH RK H+D+HRFEKIS IIKQF LS
Sbjct: 194 EADEVVLFEKATFLVISHSARKVHKDVHRFEKISTIIKQFFLS 236
>sp|O74824|GTR1_SCHPO GTP-binding protein gtr1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=gtr1 PE=3 SV=1
Length = 308
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 6 VLLFERATFLVISH--CQRKEHRDIHRFEKISNIIKQFKLS-SKWLPRFIQWK 55
V+LFER TFLVIS + D HRFEKISNI+KQFKLS SK +F ++
Sbjct: 198 VILFERTTFLVISSYSSESNPATDAHRFEKISNIVKQFKLSCSKMQAQFTTFE 250
>sp|Q00582|GTR1_YEAST GTP-binding protein GTR1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GTR1 PE=1 SV=1
Length = 310
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 13/57 (22%)
Query: 1 MDGDEVLLFERATFLVISHCQRKEHRDIH-------------RFEKISNIIKQFKLS 44
M+ E++LFER TFLVI + + H RFEKISNI+K FK S
Sbjct: 200 MNALEIILFERTTFLVICSSNGENSNENHDSSDNNNVLLDPKRFEKISNIMKNFKQS 256
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,477,517
Number of Sequences: 539616
Number of extensions: 586396
Number of successful extensions: 1725
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1713
Number of HSP's gapped (non-prelim): 11
length of query: 64
length of database: 191,569,459
effective HSP length: 36
effective length of query: 28
effective length of database: 172,143,283
effective search space: 4820011924
effective search space used: 4820011924
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)