Query psy14771
Match_columns 64
No_of_seqs 102 out of 104
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 20:12:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14771.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14771hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r7w_A Gtpase1, GTP-binding pr 99.5 4.9E-15 1.7E-19 102.8 5.6 58 1-58 197-267 (307)
2 3r7w_B Gtpase2, GTP-binding pr 98.8 1.7E-09 5.7E-14 79.4 2.4 40 1-42 190-229 (331)
3 4b4t_W RPN10, 26S proteasome r 30.3 59 0.002 22.8 3.8 34 12-45 5-40 (268)
4 4gbu_A NADPH dehydrogenase 1; 27.9 34 0.0012 24.6 2.3 28 31-58 164-192 (400)
5 4ard_A Capsid protein P27; vir 22.6 34 0.0012 22.0 1.3 15 36-50 4-18 (116)
6 4a3u_A NCR, NADH\:flavin oxido 22.3 40 0.0014 23.9 1.8 29 31-59 144-173 (358)
7 2x5n_A SPRPN10, 26S proteasome 22.1 1.1E+02 0.0037 19.6 3.7 31 11-41 3-35 (192)
8 3l5a_A NADH/flavin oxidoreduct 21.1 55 0.0019 24.1 2.3 29 30-58 161-190 (419)
9 3m8l_A Capsid protein; FCV-5 c 19.1 33 0.0011 27.4 0.8 18 47-64 330-347 (534)
10 1a1d_A RNA polymerase; RPB8, O 17.3 20 0.00069 23.9 -0.7 23 7-37 4-26 (146)
No 1
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.55 E-value=4.9e-15 Score=102.82 Aligned_cols=58 Identities=43% Similarity=0.539 Sum_probs=50.2
Q ss_pred CCceEEEEEeceeeEEEEecccCC-------------CCCCchHHHHHHHHHHHHHhhccCcCcceeEEEE
Q psy14771 1 MDGDEVLLFERATFLVISHCQRKE-------------HRDIHRFEKISNIIKQFKLSSKWLPRFIQWKYAT 58 (64)
Q Consensus 1 ~~A~EVvLFErtTFLVIs~~~~~~-------------~~d~~RFEkISnIiK~FKlScsk~~~~f~~~~~~ 58 (64)
|+++|++|||+.|||+|++.+... ..+++|||+||+|+|+||+||+|.+++|++|+.+
T Consensus 197 ~~~~~~~l~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~R~~~i~~i~~~~~~~~~~~~~~~~~~~~~ 267 (307)
T 3r7w_A 197 MNALEIILFERTTFLVICSSNGENSNENHDSSDNNNVLLDPKRFEKISNIMKNFKQSCTKLKSGFKTLILN 267 (307)
T ss_dssp HTEEEEEEEETTTCCEEEECC-----------------CCTTHHHHHHHHHHHHHHHHGGGTSCEEEEEET
T ss_pred cCCcEEEEEeeeeEEEEEecCCcccccccccccccccccCcHHHHHHHHHHHHHHHHHHhhhccCceEEEe
Confidence 468999999999999999987653 3489999999999999999999999999999875
No 2
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.79 E-value=1.7e-09 Score=79.40 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=36.4
Q ss_pred CCceEEEEEeceeeEEEEecccCCCCCCchHHHHHHHHHHHH
Q psy14771 1 MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFK 42 (64)
Q Consensus 1 ~~A~EVvLFErtTFLVIs~~~~~~~~d~~RFEkISnIiK~FK 42 (64)
|+|+||+|||++|||+||++++ +.|.+|||++|++|.-+-
T Consensus 190 ~~~~~~~LFd~~t~l~iatds~--~~d~~~ye~csd~idv~~ 229 (331)
T 3r7w_B 190 SKIEKAFLFDVNSKIYVSTDSN--PVDIQMYEVCSEFIDVTI 229 (331)
T ss_dssp SSEEEEEEEESSSCCCSEECSS--CCCHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEEeccEEEEEcCCC--CcchhHHHHHHHHHHHHH
Confidence 7899999999999999999885 678999999999998663
No 3
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.34 E-value=59 Score=22.80 Aligned_cols=34 Identities=26% Similarity=0.309 Sum_probs=26.1
Q ss_pred eeeEEEEecccCCCCC--CchHHHHHHHHHHHHHhh
Q psy14771 12 ATFLVISHCQRKEHRD--IHRFEKISNIIKQFKLSS 45 (64)
Q Consensus 12 tTFLVIs~~~~~~~~d--~~RFEkISnIiK~FKlSc 45 (64)
+|.+||-.+.+-...| |.|++.....++.|-..-
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~ 40 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAK 40 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 5788898888766555 889999888888775543
No 4
>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*
Probab=27.91 E-value=34 Score=24.65 Aligned_cols=28 Identities=14% Similarity=0.005 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhhccC-cCcceeEEEE
Q psy14771 31 FEKISNIIKQFKLSSKWL-PRFIQWKYAT 58 (64)
Q Consensus 31 FEkISnIiK~FKlScsk~-~~~f~~~~~~ 58 (64)
-|.|-.||++|..++.+. .+.|+++|+-
T Consensus 164 ~~eI~~ii~~F~~AA~rA~~AGFDgVEIH 192 (400)
T 4gbu_A 164 KDEIKQYIKEYVQAAKNSIAAGADGVEIH 192 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCeeeec
Confidence 478999999999999885 8999999974
No 5
>4ard_A Capsid protein P27; viral protein, retrovirus, GAG; 7.00A {Mason-pfizer monkey virus}
Probab=22.58 E-value=34 Score=21.98 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=12.6
Q ss_pred HHHHHHHHhhccCcC
Q psy14771 36 NIIKQFKLSSKWLPR 50 (64)
Q Consensus 36 nIiK~FKlScsk~~~ 50 (64)
+|||..|.+|...+.
T Consensus 4 k~iKdLKka~t~YG~ 18 (116)
T 4ard_A 4 AVIKELKTAASQYGA 18 (116)
T ss_pred HHHHHHHHHHHHhCC
Confidence 589999999998754
No 6
>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}
Probab=22.35 E-value=40 Score=23.93 Aligned_cols=29 Identities=3% Similarity=0.123 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhccC-cCcceeEEEEE
Q psy14771 31 FEKISNIIKQFKLSSKWL-PRFIQWKYATL 59 (64)
Q Consensus 31 FEkISnIiK~FKlScsk~-~~~f~~~~~~~ 59 (64)
-|.|-.||++|..++.+. .+.|+++|+--
T Consensus 144 ~~eI~~ii~~F~~AA~rA~~AGFDgVEIH~ 173 (358)
T 4a3u_A 144 LDEIPRLLDDYEKAARHALKAGFDGVQIHA 173 (358)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEeecc
Confidence 467999999999999884 89999999753
No 7
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=22.08 E-value=1.1e+02 Score=19.63 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=22.4
Q ss_pred ceeeEEEEecccCCCCC--CchHHHHHHHHHHH
Q psy14771 11 RATFLVISHCQRKEHRD--IHRFEKISNIIKQF 41 (64)
Q Consensus 11 rtTFLVIs~~~~~~~~d--~~RFEkISnIiK~F 41 (64)
++..|||-.+.+-...| |.|++.....++.|
T Consensus 3 e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~ 35 (192)
T 2x5n_A 3 EATMILIDNSEWMINGDYIPTRFEAQKDTVHMI 35 (192)
T ss_dssp EEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHH
T ss_pred eEEEEEEECCHhhccCCCCCCHHHHHHHHHHHH
Confidence 35667777666655444 78999998888776
No 8
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}
Probab=21.09 E-value=55 Score=24.06 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHhhccC-cCcceeEEEE
Q psy14771 30 RFEKISNIIKQFKLSSKWL-PRFIQWKYAT 58 (64)
Q Consensus 30 RFEkISnIiK~FKlScsk~-~~~f~~~~~~ 58 (64)
--|.|-.||++|..++.+. .+.|.++++-
T Consensus 161 t~~eI~~ii~~F~~AA~rA~~AGfDgVEIH 190 (419)
T 3l5a_A 161 SHEKINSIIQQYRDATLRAIKAGFDGVEIS 190 (419)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 3578999999999998775 7899999975
No 9
>3m8l_A Capsid protein; FCV-5 capsid, icosahedral virus; 3.40A {Feline calicivirus} PDB: 3m8l_B
Probab=19.10 E-value=33 Score=27.35 Aligned_cols=18 Identities=28% Similarity=0.078 Sum_probs=16.4
Q ss_pred cCcCcceeEEEEEeeecC
Q psy14771 47 WLPRFIQWKYATLSLQRS 64 (64)
Q Consensus 47 k~~~~f~~~~~~~~~~~~ 64 (64)
|+.++|++||+--+|||.
T Consensus 330 ~NnTnFk~mYIcGsLqra 347 (534)
T 3m8l_A 330 SNNTNFKSMYICGSLQRA 347 (534)
T ss_dssp CSCCSSCSCEEECCCCCC
T ss_pred cccCCccceEEeccchhh
Confidence 788999999999999983
No 10
>1a1d_A RNA polymerase; RPB8, OB fold, eukaryotic, yeast, nucleotidyltransferase; NMR {Saccharomyces cerevisiae} SCOP: b.40.4.8 PDB: 1i3q_H 1i50_H 1i6h_H 1k83_H* 1nik_H 1nt9_H 1pqv_H 1r5u_H 1r9s_H* 1r9t_H* 1sfo_H* 1twa_H* 1twc_H* 1twf_H* 1twg_H* 1twh_H* 1wcm_H 1y1v_H 1y1w_H 1y1y_H ...
Probab=17.33 E-value=20 Score=23.88 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=15.8
Q ss_pred EEEeceeeEEEEecccCCCCCCchHHHHHHH
Q psy14771 7 LLFERATFLVISHCQRKEHRDIHRFEKISNI 37 (64)
Q Consensus 7 vLFErtTFLVIs~~~~~~~~d~~RFEkISnI 37 (64)
+|||- +|-|-+ .||++|+|+|-|
T Consensus 4 ~LfeD-~F~V~~-------iDp~kfdrVSRi 26 (146)
T 1a1d_A 4 TLFDD-IFQVSE-------VDPGRYNKVCRI 26 (146)
T ss_pred ceeee-eEEEEe-------cChhHCceeEEE
Confidence 67774 365543 467799999865
Done!