RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14771
         (64 letters)



>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
           protein transport; HET: GNP; 2.77A {Saccharomyces
           cerevisiae}
          Length = 331

 Score = 53.5 bits (128), Expect = 1e-10
 Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 2/42 (4%)

Query: 1   MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFK 42
              ++  LF+  + + +S        DI  +E  S  I    
Sbjct: 190 SKIEKAFLFDVNSKIYVSTDSN--PVDIQMYEVCSEFIDVTI 229


>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
           protein transport; HET: GNP; 2.77A {Saccharomyces
           cerevisiae}
          Length = 307

 Score = 51.9 bits (124), Expect = 4e-10
 Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 13/61 (21%)

Query: 1   MDGDEVLLFERATFLVISHCQRKEHRDIH-------------RFEKISNIIKQFKLSSKW 47
           M+  E++LFER TFLVI     +   + H             RFEKISNI+K FK S   
Sbjct: 197 MNALEIILFERTTFLVICSSNGENSNENHDSSDNNNVLLDPKRFEKISNIMKNFKQSCTK 256

Query: 48  L 48
           L
Sbjct: 257 L 257


>2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate
           deaminase, COF 5'-phosphate, structural genomics; HET:
           CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1
          Length = 701

 Score = 26.2 bits (57), Expect = 0.76
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 17  ISHCQRKEHRDIHRFEKI-SNIIKQFKLSSKWLPRFIQWKYAT 58
               +   HRD +   K+ +++     ++ K L RFI+ K   
Sbjct: 233 FLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRK 275


>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex
           (helicase/DNA), DNA unwinding, hydrolase/DNA complex;
           HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19
           c.37.1.19
          Length = 673

 Score = 25.2 bits (56), Expect = 1.7
 Identities = 2/22 (9%), Positives = 7/22 (31%)

Query: 34  ISNIIKQFKLSSKWLPRFIQWK 55
           +  + +      K L + +   
Sbjct: 117 LKELTEGLIEDDKVLLQQLIST 138


>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded
           RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus
           tokodaii} PDB: 3aly_A
          Length = 149

 Score = 24.6 bits (54), Expect = 1.9
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 31  FEKISNIIKQFKLSSKWLPR 50
           +EK   + K+   +  W+PR
Sbjct: 99  YEKAIELKKKLNATLIWVPR 118


>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast);
           two-LOBE protein kinase fold, ATP-binding, nucleotid
           binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens}
           PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A*
           3ggf_A* 2xik_A*
          Length = 303

 Score = 23.4 bits (51), Expect = 6.6
 Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 4/19 (21%)

Query: 19  HCQRKEHRDIHRFEKISNI 37
           H ++K HRDI    K +N+
Sbjct: 136 HSEKKIHRDI----KAANV 150


>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A
           {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
          Length = 348

 Score = 23.1 bits (50), Expect = 8.2
 Identities = 7/19 (36%), Positives = 8/19 (42%), Gaps = 4/19 (21%)

Query: 19  HCQRKEHRDIHRFEKISNI 37
           H     HRD+    K  NI
Sbjct: 171 HSHNMIHRDV----KAGNI 185


>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein
           kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
          Length = 326

 Score = 22.7 bits (49), Expect = 9.9
 Identities = 7/19 (36%), Positives = 9/19 (47%), Gaps = 4/19 (21%)

Query: 19  HCQRKEHRDIHRFEKISNI 37
           H  +  HRDI    K  N+
Sbjct: 146 HQHKVIHRDI----KGQNV 160


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0537    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 963,200
Number of extensions: 39241
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 18
Length of query: 64
Length of database: 6,701,793
Length adjustment: 35
Effective length of query: 29
Effective length of database: 5,724,558
Effective search space: 166012182
Effective search space used: 166012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.9 bits)