RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14771
         (64 letters)



>d2gnxa2 d.109.3.1 (A:295-440) Hypothetical protein BC048403 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 146

 Score = 23.6 bits (51), Expect = 1.9
 Identities = 6/31 (19%), Positives = 12/31 (38%)

Query: 14  FLVISHCQRKEHRDIHRFEKISNIIKQFKLS 44
            +V+    +K  RD H    ++ +    K  
Sbjct: 109 TIVVIFESKKSERDSHFISFLNELSLALKNP 139


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 244,863
Number of extensions: 8243
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 3
Length of query: 64
Length of database: 2,407,596
Length adjustment: 33
Effective length of query: 31
Effective length of database: 1,954,506
Effective search space: 60589686
Effective search space used: 60589686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.3 bits)