Query psy14772
Match_columns 191
No_of_seqs 182 out of 717
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 20:13:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5208 HAP5 CCAAT-binding fac 99.9 3.6E-26 7.8E-31 196.4 4.8 100 5-104 89-189 (286)
2 KOG1657|consensus 99.9 1.1E-25 2.3E-30 194.6 7.2 100 5-106 56-156 (236)
3 PF00808 CBFD_NFYB_HMF: Histon 99.8 3E-20 6.5E-25 130.0 7.8 64 24-87 2-65 (65)
4 KOG1659|consensus 99.8 3.6E-20 7.8E-25 158.0 5.5 87 16-102 5-91 (224)
5 COG5247 BUR6 Class 2 transcrip 99.8 2.3E-19 5E-24 138.4 4.9 85 20-104 19-103 (113)
6 KOG1658|consensus 99.4 2.3E-13 5E-18 111.7 1.9 83 21-103 56-138 (162)
7 cd00074 H2A Histone 2A; H2A is 99.3 8.5E-12 1.8E-16 97.9 7.5 77 22-98 18-94 (115)
8 COG5262 HTA1 Histone H2A [Chro 99.2 1.8E-11 4E-16 96.9 6.2 77 22-98 24-100 (132)
9 COG2036 HHT1 Histones H3 and H 99.0 7.4E-10 1.6E-14 84.0 6.4 73 18-91 13-85 (91)
10 smart00414 H2A Histone 2A. 99.0 7.5E-10 1.6E-14 85.8 6.5 77 22-98 7-83 (106)
11 PLN00154 histone H2A; Provisio 99.0 1.5E-09 3.3E-14 87.6 7.1 82 22-103 36-119 (136)
12 KOG1756|consensus 99.0 1.4E-09 3E-14 87.0 6.5 80 21-100 24-103 (131)
13 PTZ00017 histone H2A; Provisio 99.0 1.4E-09 3E-14 87.7 6.3 76 22-97 25-100 (134)
14 KOG0869|consensus 98.9 2.8E-09 6E-14 88.1 6.5 77 22-99 30-107 (168)
15 PLN00156 histone H2AX; Provisi 98.8 6.6E-09 1.4E-13 84.2 6.4 77 22-98 27-104 (139)
16 PLN00153 histone H2A; Provisio 98.8 5.9E-09 1.3E-13 83.6 6.0 77 22-98 22-99 (129)
17 smart00803 TAF TATA box bindin 98.8 1.9E-08 4.1E-13 71.6 7.7 64 24-88 2-65 (65)
18 PLN00157 histone H2A; Provisio 98.8 7E-09 1.5E-13 83.4 5.9 77 22-98 24-101 (132)
19 PF00125 Histone: Core histone 98.8 1.7E-08 3.7E-13 71.5 6.2 69 21-89 5-74 (75)
20 cd00076 H4 Histone H4, one of 98.8 2.8E-08 6.2E-13 74.5 7.2 67 23-90 12-78 (85)
21 PLN00035 histone H4; Provision 98.8 2.7E-08 5.8E-13 77.1 7.2 66 24-90 29-94 (103)
22 KOG0870|consensus 98.8 1.8E-08 3.8E-13 83.9 6.7 79 21-99 7-87 (172)
23 PTZ00252 histone H2A; Provisio 98.7 3.9E-08 8.4E-13 79.3 7.4 78 22-99 23-103 (134)
24 PTZ00015 histone H4; Provision 98.6 9.7E-08 2.1E-12 73.9 7.3 67 23-90 29-95 (102)
25 smart00417 H4 Histone H4. 98.6 7.1E-08 1.5E-12 70.7 5.4 62 23-85 12-73 (74)
26 cd07981 TAF12 TATA Binding Pro 98.2 8.4E-06 1.8E-10 58.7 7.7 66 25-91 2-68 (72)
27 KOG0871|consensus 98.2 4.3E-06 9.3E-11 68.7 6.4 78 22-100 10-89 (156)
28 smart00428 H3 Histone H3. 98.0 3.8E-05 8.3E-10 59.7 7.6 80 9-88 15-99 (105)
29 cd08048 TAF11 TATA Binding Pro 97.7 8.4E-05 1.8E-09 55.6 6.1 71 18-89 10-83 (85)
30 cd07979 TAF9 TATA Binding Prot 97.7 0.00016 3.4E-09 56.8 6.6 68 28-96 5-72 (117)
31 COG5150 Class 2 transcription 97.6 0.00019 4.1E-09 58.1 6.6 83 21-103 8-91 (148)
32 smart00576 BTP Bromodomain tra 97.6 0.00036 7.8E-09 50.5 6.9 60 30-90 12-71 (77)
33 KOG1757|consensus 97.5 8.4E-05 1.8E-09 59.0 2.8 77 22-98 28-105 (131)
34 KOG1658|consensus 97.4 0.00021 4.5E-09 59.3 4.6 44 21-64 8-51 (162)
35 PLN00161 histone H3; Provision 97.4 0.00062 1.3E-08 55.2 7.1 80 9-88 41-124 (135)
36 PLN00160 histone H3; Provision 97.4 0.00054 1.2E-08 52.7 6.3 79 9-87 7-89 (97)
37 cd08050 TAF6 TATA Binding Prot 97.3 0.00071 1.5E-08 61.3 7.3 63 27-90 2-64 (343)
38 PF02969 TAF: TATA box binding 97.3 0.0015 3.2E-08 47.0 7.1 64 24-88 3-66 (66)
39 PLN00121 histone H3; Provision 97.3 0.00088 1.9E-08 54.4 6.5 78 9-87 48-129 (136)
40 PTZ00018 histone H3; Provision 97.2 0.001 2.2E-08 54.1 6.4 78 9-87 48-129 (136)
41 PF15511 CENP-T: Centromere ki 97.2 0.00055 1.2E-08 63.7 5.5 64 19-82 346-414 (414)
42 PF09415 CENP-X: CENP-S associ 96.9 0.0053 1.1E-07 44.7 7.0 62 26-87 1-65 (72)
43 PF04719 TAFII28: hTAFII28-lik 96.8 0.0022 4.8E-08 48.7 4.9 72 18-89 17-89 (90)
44 PF15630 CENP-S: Kinetochore c 96.4 0.012 2.6E-07 43.3 6.2 63 30-92 11-75 (76)
45 KOG3467|consensus 96.2 0.021 4.5E-07 43.8 6.6 63 28-91 33-95 (103)
46 smart00427 H2B Histone H2B. 96.0 0.029 6.3E-07 42.7 6.6 58 30-88 7-65 (89)
47 KOG1745|consensus 95.6 0.011 2.3E-07 48.2 3.1 80 9-88 49-131 (137)
48 PF03847 TFIID_20kDa: Transcri 95.6 0.075 1.6E-06 38.2 7.1 61 29-90 4-65 (68)
49 PF07524 Bromo_TP: Bromodomain 95.4 0.081 1.8E-06 37.8 6.9 60 30-90 12-71 (77)
50 KOG3219|consensus 95.4 0.017 3.7E-07 49.5 3.8 71 19-90 107-178 (195)
51 PF02269 TFIID-18kDa: Transcri 95.4 0.018 3.9E-07 43.5 3.4 76 30-105 7-83 (93)
52 PLN00155 histone H2A; Provisio 95.3 0.021 4.6E-07 40.3 3.2 36 22-57 22-57 (58)
53 PLN00158 histone H2B; Provisio 94.8 0.12 2.7E-06 41.1 6.7 59 29-88 32-91 (116)
54 PF15510 CENP-W: Centromere ki 94.8 0.081 1.8E-06 40.8 5.4 66 23-88 15-94 (102)
55 PTZ00463 histone H2B; Provisio 94.4 0.17 3.8E-06 40.3 6.7 58 30-88 34-92 (117)
56 cd07978 TAF13 The TATA Binding 93.7 0.35 7.6E-06 36.6 7.0 75 28-103 6-81 (92)
57 KOG1744|consensus 93.4 0.3 6.4E-06 39.5 6.5 58 30-88 43-101 (127)
58 KOG1142|consensus 91.9 0.3 6.5E-06 43.6 5.0 71 25-95 155-225 (258)
59 PF02291 TFIID-31kDa: Transcri 91.4 0.98 2.1E-05 36.3 7.1 66 29-95 17-82 (129)
60 KOG3423|consensus 89.0 2.3 5E-05 36.0 7.6 71 19-90 81-165 (176)
61 PF05236 TAF4: Transcription i 88.7 0.87 1.9E-05 39.7 5.1 44 28-72 51-94 (264)
62 KOG2549|consensus 87.6 1.9 4E-05 42.4 7.1 62 27-89 14-75 (576)
63 PF03540 TFIID_30kDa: Transcri 87.4 3.1 6.8E-05 28.7 6.2 48 24-72 2-49 (51)
64 cd08045 TAF4 TATA Binding Prot 87.1 1.7 3.6E-05 36.9 5.8 60 28-88 52-117 (212)
65 COG5095 TAF6 Transcription ini 74.6 10 0.00022 35.6 6.5 62 28-90 9-70 (450)
66 PF10979 DUF2786: Protein of u 67.2 7.7 0.00017 25.5 3.0 35 27-61 4-38 (43)
67 PF12767 SAGA-Tad1: Transcript 63.2 14 0.00031 32.0 4.8 42 28-70 210-251 (252)
68 COG5162 Transcription initiati 58.0 62 0.0013 27.7 7.5 55 16-71 80-134 (197)
69 PF13335 Mg_chelatase_2: Magne 57.0 37 0.0008 25.5 5.6 62 20-88 27-94 (96)
70 TIGR03015 pepcterm_ATPase puta 52.8 24 0.00051 29.5 4.3 50 42-91 215-267 (269)
71 KOG4336|consensus 49.3 50 0.0011 30.6 6.0 64 27-90 7-70 (323)
72 KOG2389|consensus 47.3 62 0.0014 30.3 6.4 66 23-89 28-93 (353)
73 PRK00411 cdc6 cell division co 45.5 89 0.0019 27.8 7.0 64 27-90 209-282 (394)
74 KOG1657|consensus 39.0 3.2 6.9E-05 36.5 -3.1 74 61-137 36-109 (236)
75 TIGR00764 lon_rel lon-related 38.3 1.3E+02 0.0029 29.6 7.6 63 28-90 316-391 (608)
76 KOG3334|consensus 38.1 1.5E+02 0.0033 24.6 6.7 42 56-97 44-85 (148)
77 COG5248 TAF19 Transcription in 36.8 1.5E+02 0.0033 23.8 6.3 73 26-100 11-84 (126)
78 TIGR02928 orc1/cdc6 family rep 35.0 1.9E+02 0.0041 25.3 7.4 50 42-91 220-275 (365)
79 PF13654 AAA_32: AAA domain; P 31.5 1.6E+02 0.0034 28.6 6.7 60 30-90 436-506 (509)
80 TIGR00368 Mg chelatase-related 31.4 1E+02 0.0022 29.8 5.4 60 22-88 432-497 (499)
81 KOG3901|consensus 25.7 3.4E+02 0.0073 21.6 6.5 68 32-102 17-85 (109)
82 COG1067 LonB Predicted ATP-dep 24.5 1.2E+02 0.0025 30.6 4.6 41 61-101 370-411 (647)
83 COG1474 CDC6 Cdc6-related prot 23.9 1E+02 0.0022 28.4 3.9 71 28-99 193-273 (366)
84 COG5094 TAF9 Transcription ini 23.5 3.3E+02 0.0071 22.4 6.2 65 30-95 20-87 (145)
85 TIGR01242 26Sp45 26S proteasom 23.0 1.1E+02 0.0025 27.4 3.9 41 49-89 318-362 (364)
86 PRK03992 proteasome-activating 22.1 1.2E+02 0.0026 27.9 3.9 33 58-90 340-372 (389)
87 PHA02265 hypothetical protein 21.4 3.2E+02 0.0069 21.1 5.4 50 35-85 19-72 (103)
88 PF08369 PCP_red: Proto-chloro 21.4 1.8E+02 0.004 19.0 3.7 29 58-86 15-44 (45)
89 KOG4718|consensus 20.5 1.7E+02 0.0036 26.1 4.3 56 43-98 93-154 (235)
90 PTZ00361 26 proteosome regulat 20.1 1.3E+02 0.0028 28.6 3.8 32 59-90 393-424 (438)
No 1
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]
Probab=99.92 E-value=3.6e-26 Score=196.44 Aligned_cols=100 Identities=59% Similarity=0.908 Sum_probs=94.4
Q ss_pred hhhhhhhhhhc-ccccccCCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHH
Q psy14772 5 EKEHVNRVIQV-TELDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDI 83 (191)
Q Consensus 5 ~~p~~~~e~~~-~~~d~k~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DI 83 (191)
.|-+...++.. ...+++.+.||+|||||+||.|+||++||+|||++++|+||.||++|+-+||-+|+++|||||+.+||
T Consensus 89 yWq~ti~~~e~~~q~~~k~h~LPlARIkkvMKtdedVkMisaEaPvlFak~~EiFI~ELTmRAW~~ae~NkRRtLQksDi 168 (286)
T COG5208 89 YWQQTIKAAEEERQILLKDHNLPLARIKKVMKTDEDVKMISAEAPVLFAKITEIFIEELTMRAWINAEENKRRTLQKSDI 168 (286)
T ss_pred HHHHHHHHHHHhHHHHHHhccCcHHHHHHHHhcccchhheecccchHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHH
Confidence 68888888883 34778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccccccccCCCcc
Q psy14772 84 AMAITKYDMFDFLIDIVPREE 104 (191)
Q Consensus 84 a~AV~~~e~fdFL~DiVP~~~ 104 (191)
+.||++.|.||||.||||+.-
T Consensus 169 a~Av~kSeMfDFLidivpr~p 189 (286)
T COG5208 169 AAAVKKSEMFDFLIDIVPRNP 189 (286)
T ss_pred HHHHHHHHHHhHHhhhccCCC
Confidence 999999999999999999874
No 2
>KOG1657|consensus
Probab=99.92 E-value=1.1e-25 Score=194.56 Aligned_cols=100 Identities=60% Similarity=0.909 Sum_probs=92.9
Q ss_pred hhhhhhhhhh-cccccccCCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHH
Q psy14772 5 EKEHVNRVIQ-VTELDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDI 83 (191)
Q Consensus 5 ~~p~~~~e~~-~~~~d~k~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DI 83 (191)
+|.... |+ .+..|++...|||+|||||||.|+|+.+|+.|||++++||||+||.+|+.+||.++++++||+++++||
T Consensus 56 fw~~~~--~e~e~~~d~~~~~lPlaRiKkimK~dedv~mI~~Eapvl~aka~E~Fi~elt~~sw~~Tee~~rrtl~~sdi 133 (236)
T KOG1657|consen 56 FWSKQA--IEKEGQLDFKNHILPLARIKKIMKSDEDVSMITAEAPVLFAKACELFITELTLRSWVHTEENKRRTLQKSDI 133 (236)
T ss_pred hhhccc--cccccccchhhccCcHhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhcccccccchHHHH
Confidence 455544 33 577899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccccccccCCCcccc
Q psy14772 84 AMAITKYDMFDFLIDIVPREEVK 106 (191)
Q Consensus 84 a~AV~~~e~fdFL~DiVP~~~~k 106 (191)
+.+|.+.+.||||.|+||+....
T Consensus 134 a~av~~s~~fdFL~DivP~~~~~ 156 (236)
T KOG1657|consen 134 AAAVTQSETFDFLRDIVPRKILA 156 (236)
T ss_pred HHHhccCCCccceeccccchhcc
Confidence 99999999999999999998655
No 3
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=99.82 E-value=3e-20 Score=129.96 Aligned_cols=64 Identities=44% Similarity=0.538 Sum_probs=59.7
Q ss_pred CCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHH
Q psy14772 24 ALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAI 87 (191)
Q Consensus 24 ~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV 87 (191)
.||++|||||||.||++.+||+||.+++++|+|+|+++|+.+|++.|..++||||+++||..||
T Consensus 2 ~lP~a~vkri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 2 SLPLARVKRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp SS-HHHHHHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred CCChHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 6999999999999999999999999999999999999999999999999999999999999986
No 4
>KOG1659|consensus
Probab=99.80 E-value=3.6e-20 Score=157.96 Aligned_cols=87 Identities=28% Similarity=0.476 Sum_probs=83.1
Q ss_pred ccccccCCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCcccc
Q psy14772 16 TELDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDF 95 (191)
Q Consensus 16 ~~~d~k~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdF 95 (191)
...++...+||.+||||||+.|+||++|+...|++++||+|+|++.|+.++++.++..+.|||+..||+.||.+.+.|||
T Consensus 5 ~~~~~~~trfp~aRiKKIMQ~dEdIGKvaqavPViisralElFl~~l~~~t~~~t~~~~aKt~s~~hlkq~v~~~~~FdF 84 (224)
T KOG1659|consen 5 SSFKKYKTRFPPARIKKIMQSDEDIGKVAQAVPVIISRALELFLESLLQKTLEITRSRGAKTVSSSHLKQAVESDPKFDF 84 (224)
T ss_pred chhhhhhccCCHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCHHHHHHHHhccchhHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCC
Q psy14772 96 LIDIVPR 102 (191)
Q Consensus 96 L~DiVP~ 102 (191)
|+|+|..
T Consensus 85 Lk~~v~~ 91 (224)
T KOG1659|consen 85 LKEVVEK 91 (224)
T ss_pred HHHHHHh
Confidence 9998753
No 5
>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]
Probab=99.77 E-value=2.3e-19 Score=138.38 Aligned_cols=85 Identities=26% Similarity=0.443 Sum_probs=80.4
Q ss_pred ccCCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCcccccccc
Q psy14772 20 LKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDI 99 (191)
Q Consensus 20 ~k~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~Di 99 (191)
.+.++||+|||||||+.|+|+++|++..|++.+||+|+|+.+|...+...|+....|.++.++|..|+.++++||||.|+
T Consensus 19 ~~ktrFP~ar~KkIMQ~deDiGKV~q~tPVIaskalE~Fl~~iv~~s~k~aR~~~skR~t~e~lk~a~~sdekFdFL~~~ 98 (113)
T COG5247 19 KKKTRFPIARLKKIMQLDEDIGKVGQSTPVIASKALEMFLTEIVGLSLKEARKKSSKRMTSEFLKRATESDEKFDFLKNM 98 (113)
T ss_pred hhhhcCCHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhhhHHHHHHHHH
Confidence 46689999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred CCCcc
Q psy14772 100 VPREE 104 (191)
Q Consensus 100 VP~~~ 104 (191)
+.-..
T Consensus 99 ~~~~~ 103 (113)
T COG5247 99 EQFKN 103 (113)
T ss_pred HHhcC
Confidence 86543
No 6
>KOG1658|consensus
Probab=99.35 E-value=2.3e-13 Score=111.68 Aligned_cols=83 Identities=42% Similarity=0.577 Sum_probs=79.4
Q ss_pred cCCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCccccccccC
Q psy14772 21 KTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDIV 100 (191)
Q Consensus 21 k~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~DiV 100 (191)
+.++||++|||.+||+|||+.+...||.+++++|.|+|+++|...++..++.++|||++..|+..||+..+.|.||.+..
T Consensus 56 ~l~rLpL~rik~vvkl~pdl~l~~dea~~l~a~aaelfi~~Ln~~~~~~~q~~k~kt~qr~d~D~ai~~~de~~fle~~~ 135 (162)
T KOG1658|consen 56 SLSRLPLARIKQVVKLDPDLTLLNDEASQLIAKAAELFIQELNDVAYTTAQLRKRKTEQRRDYDTAIEAVDEFAFLEGAL 135 (162)
T ss_pred hhhhccHHHHHhhccCCcchhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhhhhcccccccchHHHHHHhhhc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCc
Q psy14772 101 PRE 103 (191)
Q Consensus 101 P~~ 103 (191)
+-+
T Consensus 136 d~~ 138 (162)
T KOG1658|consen 136 DTA 138 (162)
T ss_pred ccC
Confidence 643
No 7
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=99.29 E-value=8.5e-12 Score=97.93 Aligned_cols=77 Identities=19% Similarity=0.323 Sum_probs=72.9
Q ss_pred CCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCccccccc
Q psy14772 22 TQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLID 98 (191)
Q Consensus 22 ~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~D 98 (191)
.+.||++||.|+||..-...+||++|++.++.++|.+..++.+.|.+.|...|+++|+++||..||.++++|++|..
T Consensus 18 gL~fPV~ri~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~nD~EL~~L~~ 94 (115)
T cd00074 18 GLQFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVRNDEELNKLLK 94 (115)
T ss_pred CccCcHHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHhccHHHHHHHc
Confidence 57899999999999887889999999999999999999999999999999999999999999999999999986654
No 8
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=99.23 E-value=1.8e-11 Score=96.93 Aligned_cols=77 Identities=22% Similarity=0.334 Sum_probs=74.6
Q ss_pred CCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCccccccc
Q psy14772 22 TQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLID 98 (191)
Q Consensus 22 ~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~D 98 (191)
.+.||++|||||||.+...++|+++|+++++.++|+.+.+++.-|.+.|..+|.|.|.+.||..||+++++++||..
T Consensus 24 gl~fpvgrvkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~PrHlqlAIrnD~EL~~l~~ 100 (132)
T COG5262 24 GLIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPRHLQLAIRNDEELNKLLG 100 (132)
T ss_pred CccccHHHHHHHHHcCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechHHHHHHhcCcHHHHHHhh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999987
No 9
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=99.01 E-value=7.4e-10 Score=84.02 Aligned_cols=73 Identities=25% Similarity=0.370 Sum_probs=65.4
Q ss_pred ccccCCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCC
Q psy14772 18 LDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYD 91 (191)
Q Consensus 18 ~d~k~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e 91 (191)
.......||.+.|.||||.- ...+||.+|...+..|.|.|+..+++.|..+|.+.|||||+.+||..|+....
T Consensus 13 ~~~~~~~Lp~apv~Ri~r~~-~~~Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~~~~ 85 (91)
T COG2036 13 QRSTDLLLPKAPVRRILRKA-GAERVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALKRLG 85 (91)
T ss_pred hhhhhhhcCchHHHHHHHHH-hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHhc
Confidence 34455779999999999984 44499999999999999999999999999999999999999999999997654
No 10
>smart00414 H2A Histone 2A.
Probab=99.01 E-value=7.5e-10 Score=85.82 Aligned_cols=77 Identities=22% Similarity=0.358 Sum_probs=71.7
Q ss_pred CCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCccccccc
Q psy14772 22 TQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLID 98 (191)
Q Consensus 22 ~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~D 98 (191)
.+.||++||.|.||..-...+|++.|++.++.++|.+..++.+.|...|..+|++.|++.||..||.++++++.|..
T Consensus 7 gL~fPVgRi~r~Lk~~~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~nD~EL~~L~~ 83 (106)
T smart00414 7 GLQFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIRNDEELNKLLK 83 (106)
T ss_pred CccCchHHHHHHHHcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhccCCHHHHHHHc
Confidence 36899999999999988888999999999999999999999999999999999999999999999999999984443
No 11
>PLN00154 histone H2A; Provisional
Probab=98.97 E-value=1.5e-09 Score=87.61 Aligned_cols=82 Identities=20% Similarity=0.221 Sum_probs=73.7
Q ss_pred CCCCChHHHHHHHhcCC-CccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCccccccc-c
Q psy14772 22 TQALPLARIKKIMKLDD-GVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLID-I 99 (191)
Q Consensus 22 ~~~LPlARIKKIMK~D~-DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~D-i 99 (191)
-+.||++||.|.||..- ...+|++.|+++++.++|++..++.+.|.+.|..+|++.|++.||..||.++++|+.|.. .
T Consensus 36 gL~FPVgRi~r~Lk~g~~~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIrnDeEL~~Ll~~T 115 (136)
T PLN00154 36 GLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGT 115 (136)
T ss_pred CccCchHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhccCcHHHHHHhcCC
Confidence 58899999999999974 567999999999999999999999999999999999999999999999999999996554 4
Q ss_pred CCCc
Q psy14772 100 VPRE 103 (191)
Q Consensus 100 VP~~ 103 (191)
++.-
T Consensus 116 Ia~G 119 (136)
T PLN00154 116 IAGG 119 (136)
T ss_pred ccCC
Confidence 4433
No 12
>KOG1756|consensus
Probab=98.96 E-value=1.4e-09 Score=87.03 Aligned_cols=80 Identities=20% Similarity=0.322 Sum_probs=75.9
Q ss_pred cCCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCccccccccC
Q psy14772 21 KTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDIV 100 (191)
Q Consensus 21 k~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~DiV 100 (191)
-.+.||++||.|+||......+|+..|+++++..+|+...++++.|...|+++++..|.++||..||.+++++.||.+-|
T Consensus 24 agl~fPvgri~r~Lr~~~~~~ri~~gapV~laavLeYL~Aeile~agnaardnkk~ri~PrH~~lAI~NDeEL~~lL~~v 103 (131)
T KOG1756|consen 24 AGLQFPVGRIHRLLRKGRYAQRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRITPRHLQLAIRNDEELNKLLGKV 103 (131)
T ss_pred cccccCHHHHHHHHHccchhhhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccccChHHHHHHHhCcHHHHHHhccc
Confidence 45789999999999998889999999999999999999999999999999999999999999999999999999998854
No 13
>PTZ00017 histone H2A; Provisional
Probab=98.96 E-value=1.4e-09 Score=87.68 Aligned_cols=76 Identities=22% Similarity=0.342 Sum_probs=72.3
Q ss_pred CCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCcccccc
Q psy14772 22 TQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLI 97 (191)
Q Consensus 22 ~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~ 97 (191)
-+.||++||.|.||..-...+|++.|+++++.++|++..++.+.|.+.|..++++.|++.||..||.++++|+.|.
T Consensus 25 gL~FPVgRi~R~Lk~g~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~RItPrHi~lAI~nDeEL~~Ll 100 (134)
T PTZ00017 25 GLQFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHIQLAIRNDEELNKLL 100 (134)
T ss_pred CcccchHHHHHHHhccchhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHhhccCcHHHHHHH
Confidence 5789999999999988788899999999999999999999999999999999999999999999999999999666
No 14
>KOG0869|consensus
Probab=98.91 E-value=2.8e-09 Score=88.09 Aligned_cols=77 Identities=25% Similarity=0.327 Sum_probs=69.0
Q ss_pred CCCCChHHHHHHHhcC-CCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCcccccccc
Q psy14772 22 TQALPLARIKKIMKLD-DGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDI 99 (191)
Q Consensus 22 ~~~LPlARIKKIMK~D-~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~Di 99 (191)
..-||+|.|-||||.- |...+||+||...+..+...||..++.+|.+.|+..|||||+-+||.-|+.... |+-..+.
T Consensus 30 Dr~LPIANV~RIMK~~lP~naKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~tLG-Fe~Y~ep 107 (168)
T KOG0869|consen 30 DRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMSTLG-FENYAEP 107 (168)
T ss_pred hhhccHHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHHHcC-cHhHHHH
Confidence 4569999999999987 888999999999999999999999999999999999999999999999998764 4444443
No 15
>PLN00156 histone H2AX; Provisional
Probab=98.84 E-value=6.6e-09 Score=84.20 Aligned_cols=77 Identities=22% Similarity=0.309 Sum_probs=72.0
Q ss_pred CCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCccc-cccc
Q psy14772 22 TQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFD-FLID 98 (191)
Q Consensus 22 ~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fd-FL~D 98 (191)
-+.||++||.|.|+..-...+|++.|+++++..+|+...++.+.|.+.|..++++.|+++||..||.++++|+ +|.+
T Consensus 27 gL~FPVgRi~R~Lk~g~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi~lAIrnDeEL~~Ll~~ 104 (139)
T PLN00156 27 GLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGS 104 (139)
T ss_pred CcccchHHHHHHHhcCChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHhhccCcHHHHHHHCC
Confidence 4789999999999998778899999999999999999999999999999999999999999999999999998 4445
No 16
>PLN00153 histone H2A; Provisional
Probab=98.84 E-value=5.9e-09 Score=83.56 Aligned_cols=77 Identities=23% Similarity=0.310 Sum_probs=72.3
Q ss_pred CCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCccc-cccc
Q psy14772 22 TQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFD-FLID 98 (191)
Q Consensus 22 ~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fd-FL~D 98 (191)
-+.||++||.|.||..-...+|++.|+++++..+|+++.++.+.|.+.|..+|++.|++.||..||.++++|+ +|.+
T Consensus 22 gL~FpVgRi~R~Lr~g~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~nDeEL~~Ll~~ 99 (129)
T PLN00153 22 GLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGE 99 (129)
T ss_pred CcccchHHHHHHHhcCchhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHhhccCcHHHHHHHCC
Confidence 4789999999999988888899999999999999999999999999999999999999999999999999998 5544
No 17
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=98.83 E-value=1.9e-08 Score=71.62 Aligned_cols=64 Identities=31% Similarity=0.378 Sum_probs=60.8
Q ss_pred CCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHh
Q psy14772 24 ALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAIT 88 (191)
Q Consensus 24 ~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~ 88 (191)
.||.+-|++|.+. -++.++|.|+...++..+|.|+.+++.+|..+++++|||||+.+||..|++
T Consensus 2 ~~p~~~i~ria~~-~Gi~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 2 WLPKETIKDVAES-LGIGNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred CCCHHHHHHHHHH-CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 5899999999998 678899999999999999999999999999999999999999999998863
No 18
>PLN00157 histone H2A; Provisional
Probab=98.82 E-value=7e-09 Score=83.45 Aligned_cols=77 Identities=21% Similarity=0.289 Sum_probs=72.4
Q ss_pred CCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCccc-cccc
Q psy14772 22 TQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFD-FLID 98 (191)
Q Consensus 22 ~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fd-FL~D 98 (191)
-+.||++||.|.||..-...+|++.|+++++..+|++..++.+.|.+.|..++++.|++.||..||.++++|+ +|.+
T Consensus 24 gL~FPVgRi~R~Lk~g~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~nDeEL~~Ll~~ 101 (132)
T PLN00157 24 GLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGG 101 (132)
T ss_pred CcccchHHHHHHHhcCchhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHhhcccCcHHHHHHHcC
Confidence 5889999999999998778899999999999999999999999999999999999999999999999999998 5555
No 19
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=98.78 E-value=1.7e-08 Score=71.48 Aligned_cols=69 Identities=22% Similarity=0.241 Sum_probs=62.1
Q ss_pred cCCCCChHHHHHHHhcCCCc-cccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhc
Q psy14772 21 KTQALPLARIKKIMKLDDGV-KMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 89 (191)
Q Consensus 21 k~~~LPlARIKKIMK~D~DV-~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~ 89 (191)
....+|+.||.|-+..+-.. .++|++|+.++..++|.|+.++...|+..|.++||+||+..||..|+..
T Consensus 5 ~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~ 74 (75)
T PF00125_consen 5 LIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRI 74 (75)
T ss_dssp SSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHH
T ss_pred ccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhc
Confidence 34568889999888887555 4999999999999999999999999999999999999999999999863
No 20
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=98.76 E-value=2.8e-08 Score=74.46 Aligned_cols=67 Identities=21% Similarity=0.303 Sum_probs=63.1
Q ss_pred CCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcC
Q psy14772 23 QALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 23 ~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~ 90 (191)
..||.+-|+||.+. .++.+||.++...+..++|.|+++++.+|..+|++.+||||+.+||..|++..
T Consensus 12 ~gi~k~~I~RLarr-~GvkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~ 78 (85)
T cd00076 12 KGITKPAIRRLARR-GGVKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 78 (85)
T ss_pred ccCCHHHHHHHHHH-cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHC
Confidence 35999999999998 56999999999999999999999999999999999999999999999999754
No 21
>PLN00035 histone H4; Provisional
Probab=98.76 E-value=2.7e-08 Score=77.13 Aligned_cols=66 Identities=21% Similarity=0.292 Sum_probs=62.8
Q ss_pred CCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcC
Q psy14772 24 ALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 24 ~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~ 90 (191)
.||.+.|+||.+. ..+.+||.++...+..++|.|++.++.+|..+|++.+||||+.+||..|++..
T Consensus 29 ~ipk~~IrRLARr-~GvkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr~ 94 (103)
T PLN00035 29 GITKPAIRRLARR-GGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
T ss_pred cCCHHHHHHHHHH-cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHc
Confidence 3999999999998 56999999999999999999999999999999999999999999999999764
No 22
>KOG0870|consensus
Probab=98.76 E-value=1.8e-08 Score=83.86 Aligned_cols=79 Identities=27% Similarity=0.339 Sum_probs=71.2
Q ss_pred cCCCCChHHHHHHHhcC-CCc-cccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCccccccc
Q psy14772 21 KTQALPLARIKKIMKLD-DGV-KMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLID 98 (191)
Q Consensus 21 k~~~LPlARIKKIMK~D-~DV-~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~D 98 (191)
-...||.|-|.|++|.- |+. ..||+||..+|++|+-.|+.+|+..|.+.|..++||||+.+||..|+...+.-.|+.-
T Consensus 7 ~dl~lP~AiI~rlvke~l~E~~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~Eiefs~f~~p 86 (172)
T KOG0870|consen 7 EDLNLPNAIITRLVKEVLPESNVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALDEIEFSSFVNP 86 (172)
T ss_pred HHhhccHHHHHHHHHHhCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHhchHHHhhH
Confidence 35679999999999965 444 6999999999999999999999999999999999999999999999999987778654
Q ss_pred c
Q psy14772 99 I 99 (191)
Q Consensus 99 i 99 (191)
+
T Consensus 87 l 87 (172)
T KOG0870|consen 87 L 87 (172)
T ss_pred H
Confidence 4
No 23
>PTZ00252 histone H2A; Provisional
Probab=98.73 E-value=3.9e-08 Score=79.33 Aligned_cols=78 Identities=15% Similarity=0.276 Sum_probs=71.5
Q ss_pred CCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCCeeCHHHHHHHHhcCCccc-cccc
Q psy14772 22 TQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTED--NKRRTLQRNDIAMAITKYDMFD-FLID 98 (191)
Q Consensus 22 ~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~--~kRKTI~~~DIa~AV~~~e~fd-FL~D 98 (191)
-+.||++||.|.|+..-...+|++.|+++++..+|....++.+.|.+.|.+ +|++.|+++||..||.++++|+ +|.+
T Consensus 23 GL~FPVgRi~R~Lr~g~ya~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~RItPrHi~lAIrNDeEL~~Ll~~ 102 (134)
T PTZ00252 23 GLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPRTVTLAVRHDDDLGSLLKN 102 (134)
T ss_pred CccCchHHHHHHHHcCCcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHhhccChHHHHHHHcC
Confidence 478999999999999888889999999999999999999999999999965 7889999999999999999998 6666
Q ss_pred c
Q psy14772 99 I 99 (191)
Q Consensus 99 i 99 (191)
+
T Consensus 103 v 103 (134)
T PTZ00252 103 V 103 (134)
T ss_pred C
Confidence 3
No 24
>PTZ00015 histone H4; Provisional
Probab=98.65 E-value=9.7e-08 Score=73.87 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=63.5
Q ss_pred CCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcC
Q psy14772 23 QALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 23 ~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~ 90 (191)
..+|.+-|+||.+. .++.+||.++...+..++|.|+++++.+|..+|++.+||||+.+||..|++..
T Consensus 29 ~gI~k~~IrRLarr-~GvkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr~ 95 (102)
T PTZ00015 29 RGITKGAIRRLARR-GGVKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALKRQ 95 (102)
T ss_pred cCCCHHHHHHHHHH-cCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhc
Confidence 46999999999998 68999999999999999999999999999999999999999999999998754
No 25
>smart00417 H4 Histone H4.
Probab=98.62 E-value=7.1e-08 Score=70.69 Aligned_cols=62 Identities=23% Similarity=0.274 Sum_probs=58.6
Q ss_pred CCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHH
Q psy14772 23 QALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAM 85 (191)
Q Consensus 23 ~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~ 85 (191)
..+|.+.|+||.+. .++.+||.++...+..++|.|+++++.+|..+|++.+||||+.+||..
T Consensus 12 ~gI~k~~IrRLaRr-~GvkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~ 73 (74)
T smart00417 12 QGITKPAIRRLARR-GGVKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVY 73 (74)
T ss_pred cCCCHHHHHHHHHH-cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHhee
Confidence 35999999999998 689999999999999999999999999999999999999999999864
No 26
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=98.20 E-value=8.4e-06 Score=58.69 Aligned_cols=66 Identities=17% Similarity=0.293 Sum_probs=57.5
Q ss_pred CChHHHHHHHhc-CCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCC
Q psy14772 25 LPLARIKKIMKL-DDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYD 91 (191)
Q Consensus 25 LPlARIKKIMK~-D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e 91 (191)
++-..+..++|. ||. .+++.+|..++...+|.|+..++..|...|++.||+||..+||..++++..
T Consensus 2 ~~k~~l~~lv~~id~~-~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r~~ 68 (72)
T cd07981 2 LTKRKLQELLKEIDPR-EQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLERNW 68 (72)
T ss_pred CcHHHHHHHHHhhCCC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhc
Confidence 344566677764 554 799999999999999999999999999999999999999999999998764
No 27
>KOG0871|consensus
Probab=98.18 E-value=4.3e-06 Score=68.74 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=68.9
Q ss_pred CCCCChHHHHHHHhcC-C-CccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCcccccccc
Q psy14772 22 TQALPLARIKKIMKLD-D-GVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDI 99 (191)
Q Consensus 22 ~~~LPlARIKKIMK~D-~-DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~Di 99 (191)
...||-+-|.||+|.= | |+ +|.+||-.+|--+|-.||..|+++|.+.|....+|||.++||..|+++-..=+|+...
T Consensus 10 e~sLPkAtv~KmIke~lP~d~-rvakeareliincCvEFI~liSsEAneic~~e~KKTIa~EHV~KALe~LgF~eYiee~ 88 (156)
T KOG0871|consen 10 ELSLPKATVNKMIKEMLPKDV-RVAKEARELIINCCVEFINLISSEANEICNKEAKKTIAPEHVIKALENLGFGEYIEEA 88 (156)
T ss_pred cccCcHHHHHHHHHHhCCccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHHHcchHHHHHHH
Confidence 4679999999999964 5 55 9999999999999999999999999999999999999999999999987655565554
Q ss_pred C
Q psy14772 100 V 100 (191)
Q Consensus 100 V 100 (191)
.
T Consensus 89 ~ 89 (156)
T KOG0871|consen 89 E 89 (156)
T ss_pred H
Confidence 3
No 28
>smart00428 H3 Histone H3.
Probab=97.96 E-value=3.8e-05 Score=59.73 Aligned_cols=80 Identities=24% Similarity=0.227 Sum_probs=66.3
Q ss_pred hhhhhh--cccccccCCCCChHHHHH-HHhcCCC--ccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHH
Q psy14772 9 VNRVIQ--VTELDLKTQALPLARIKK-IMKLDDG--VKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDI 83 (191)
Q Consensus 9 ~~~e~~--~~~~d~k~~~LPlARIKK-IMK~D~D--V~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DI 83 (191)
...||+ -...++--..+|.+|+-| |+..-.+ --+++.+|..++..|+|.|+..|.+.|+.+|.+.||+||..+||
T Consensus 15 aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvTl~~kDi 94 (105)
T smart00428 15 ALREIRKYQKSTDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDI 94 (105)
T ss_pred HHHHHHHHccCcccccccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHhhH
Confidence 578888 456677778899998644 5443221 23999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q psy14772 84 AMAIT 88 (191)
Q Consensus 84 a~AV~ 88 (191)
..|..
T Consensus 95 ~La~r 99 (105)
T smart00428 95 QLARR 99 (105)
T ss_pred HHHHH
Confidence 88753
No 29
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=97.75 E-value=8.4e-05 Score=55.63 Aligned_cols=71 Identities=20% Similarity=0.270 Sum_probs=62.5
Q ss_pred ccccCCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CCeeCHHHHHHHHhc
Q psy14772 18 LDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNK---RRTLQRNDIAMAITK 89 (191)
Q Consensus 18 ~d~k~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~k---RKTI~~~DIa~AV~~ 89 (191)
+.++...||-+.|||||...-+ ..++.+...+++..+.+|+.+|+.+|.++..+.+ +.-|+++||..|...
T Consensus 10 e~~Rra~f~k~~iKr~~~~~~~-~~v~~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~rr 83 (85)
T cd08048 10 EMFRRSSFPKAAIKRLIQSVTG-QSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYRR 83 (85)
T ss_pred HHHHHhhccHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHHH
Confidence 4567788999999999998766 7999999999999999999999999999986543 589999999999864
No 30
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=97.65 E-value=0.00016 Score=56.81 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=60.3
Q ss_pred HHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCccccc
Q psy14772 28 ARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFL 96 (191)
Q Consensus 28 ARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL 96 (191)
.-|++|+|. -++..++.+++..+..-++.++.++..+|..+|++.+|+||+.+||..|++..-.+.|-
T Consensus 5 ~~v~~iLk~-~Gv~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~~~f~ 72 (117)
T cd07979 5 RVIAAILKS-MGITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVDYSFT 72 (117)
T ss_pred HHHHHHHHH-CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCC
Confidence 358889997 57889999999999999999999999999999999999999999999999765444454
No 31
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=97.60 E-value=0.00019 Score=58.10 Aligned_cols=83 Identities=18% Similarity=0.277 Sum_probs=70.2
Q ss_pred cCCCCChHHHHHHHhcC-CCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCcccccccc
Q psy14772 21 KTQALPLARIKKIMKLD-DGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDI 99 (191)
Q Consensus 21 k~~~LPlARIKKIMK~D-~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~Di 99 (191)
-...||-|-|.|.+..= |---.+++||..++--||=.||.-|+.+|.+.|....+|||.|+||..|+++.+.=+|....
T Consensus 8 De~sLPKATVqKMvS~iLp~dl~ftKearei~in~cieFi~~lsseAne~ce~EaKKTIa~EHviKALenLef~eyi~~~ 87 (148)
T COG5150 8 DENSLPKATVQKMVSSILPKDLVFTKEAREIFINACIEFINMLSSEANEACEEEAKKTIAYEHVIKALENLEFEEYIESC 87 (148)
T ss_pred ccccCcHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhccHHHHHHHH
Confidence 45679999999988743 33348999999999999999999999999999999999999999999999988755666655
Q ss_pred CCCc
Q psy14772 100 VPRE 103 (191)
Q Consensus 100 VP~~ 103 (191)
...+
T Consensus 88 ~e~~ 91 (148)
T COG5150 88 MEEH 91 (148)
T ss_pred HHHH
Confidence 5433
No 32
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=97.56 E-value=0.00036 Score=50.53 Aligned_cols=60 Identities=18% Similarity=0.244 Sum_probs=55.3
Q ss_pred HHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcC
Q psy14772 30 IKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 30 IKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~ 90 (191)
|.+|++. -+...++.+|...++..+|.|+.+|++.+..+|+..+|++.+..||..|+.+.
T Consensus 12 Vaqil~~-~Gf~~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~~ 71 (77)
T smart00576 12 VAQILES-AGFDSFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALENL 71 (77)
T ss_pred HHHHHHH-cCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 6678886 57889999999999999999999999999999999999999999999998764
No 33
>KOG1757|consensus
Probab=97.47 E-value=8.4e-05 Score=59.01 Aligned_cols=77 Identities=21% Similarity=0.240 Sum_probs=69.6
Q ss_pred CCCCChHHHHHHHhcC-CCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCccccccc
Q psy14772 22 TQALPLARIKKIMKLD-DGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLID 98 (191)
Q Consensus 22 ~~~LPlARIKKIMK~D-~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~D 98 (191)
-..||+.||.|-+|.- ...++|.+.|.+..+..+|+...+..+.|.+.++.-|-|.|++.|+..||.-+|++|-|..
T Consensus 28 GlqFpVgRihr~LK~r~t~h~rVGataavy~aaileYLTaEVLeLAgNasKdLKvKRitprHlqLAiRGDeELDtLIk 105 (131)
T KOG1757|consen 28 GLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIK 105 (131)
T ss_pred ccccchHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHcccccccceeeeccchhheeeecCcHHHHHHHH
Confidence 4789999999999976 6778999999999999999998888888888888889999999999999999999998864
No 34
>KOG1658|consensus
Probab=97.42 E-value=0.00021 Score=59.29 Aligned_cols=44 Identities=27% Similarity=0.283 Sum_probs=41.8
Q ss_pred cCCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHH
Q psy14772 21 KTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTI 64 (191)
Q Consensus 21 k~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~ 64 (191)
....||++.+|||-|.||...+-+.+|....+.|+|.|++.|+.
T Consensus 8 ~~p~~p~ekvkkiak~dPey~~te~~a~~etafatE~fvq~lv~ 51 (162)
T KOG1658|consen 8 CSPKLPMEKVKKIAKNDPEYMDTEDDAFVETAFATEQFVQVLVH 51 (162)
T ss_pred hCccccHHHHHHhhcCCchhhhcccchHHHHHHHHHHHHhhhhh
Confidence 56889999999999999999999999999999999999999998
No 35
>PLN00161 histone H3; Provisional
Probab=97.40 E-value=0.00062 Score=55.24 Aligned_cols=80 Identities=24% Similarity=0.255 Sum_probs=65.9
Q ss_pred hhhhhh--cccccccCCCCChHHHHHHHhcC--CCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHH
Q psy14772 9 VNRVIQ--VTELDLKTQALPLARIKKIMKLD--DGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 84 (191)
Q Consensus 9 ~~~e~~--~~~~d~k~~~LPlARIKKIMK~D--~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa 84 (191)
...||+ -..-++--..+|.+|+-|-+-.+ ++.-++..+|..++..|+|.|+-.|-+.|+-+|.+.||.||...||.
T Consensus 41 aLrEIR~yQkst~lLIpklPF~RLVREI~~~~~~~~~Rfq~~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~kDm~ 120 (135)
T PLN00161 41 ALREIRKYQKSTELLIRKLPFARLVREISNEMLREPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDMQ 120 (135)
T ss_pred HHHHHHHHccccccccccccHHHHHHHHHHhcCCCCcEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHH
Confidence 468888 45566667889999965544332 33349999999999999999999999999999999999999999998
Q ss_pred HHHh
Q psy14772 85 MAIT 88 (191)
Q Consensus 85 ~AV~ 88 (191)
.+..
T Consensus 121 La~r 124 (135)
T PLN00161 121 LARR 124 (135)
T ss_pred HHHH
Confidence 7753
No 36
>PLN00160 histone H3; Provisional
Probab=97.39 E-value=0.00054 Score=52.72 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=65.9
Q ss_pred hhhhhh--cccccccCCCCChHHHHHHHhcC--CCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHH
Q psy14772 9 VNRVIQ--VTELDLKTQALPLARIKKIMKLD--DGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 84 (191)
Q Consensus 9 ~~~e~~--~~~~d~k~~~LPlARIKKIMK~D--~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa 84 (191)
...||+ -...++--..+|.+|+-|-+-.+ .+.-+...+|..++..|+|.|+-.|-+.|+.+|.+.||.||..+|+.
T Consensus 7 aLrEIR~yQkst~lLI~k~pF~RLVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl~~kD~~ 86 (97)
T PLN00160 7 ALKEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTIMPKDMQ 86 (97)
T ss_pred HHHHHHHHccchhhhhccccHHHHHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccccchhhHH
Confidence 567888 45666677889999975544332 34459999999999999999999999999999999999999999998
Q ss_pred HHH
Q psy14772 85 MAI 87 (191)
Q Consensus 85 ~AV 87 (191)
.+.
T Consensus 87 L~~ 89 (97)
T PLN00160 87 LAR 89 (97)
T ss_pred HHH
Confidence 775
No 37
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=97.31 E-value=0.00071 Score=61.30 Aligned_cols=63 Identities=25% Similarity=0.302 Sum_probs=57.3
Q ss_pred hHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcC
Q psy14772 27 LARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 27 lARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~ 90 (191)
..-||-|.+. -++.++|.||...++.-+|.++.+++++|...+++.|||+|+.+||..|++..
T Consensus 2 ~~~i~~ia~~-~Gi~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~~ 64 (343)
T cd08050 2 QESIKLIAES-LGIDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALRLR 64 (343)
T ss_pred hhHHHHHHHH-cCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHh
Confidence 4557778877 67889999999999999999999999999999999999999999999998643
No 38
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=97.28 E-value=0.0015 Score=46.99 Aligned_cols=64 Identities=23% Similarity=0.317 Sum_probs=50.4
Q ss_pred CCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHh
Q psy14772 24 ALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAIT 88 (191)
Q Consensus 24 ~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~ 88 (191)
.||..-||-|-.+ =++..++.|+.-+++.=+|.-+.++...|...++++||++++.+||..|++
T Consensus 3 ~~~~esvk~iAes-~Gi~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 3 VFSQESVKDIAES-LGISNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp ---HHHHHHHHHH-TT---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred cCCHHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 4777788888777 567889999999999999999999999999999999999999999999873
No 39
>PLN00121 histone H3; Provisional
Probab=97.26 E-value=0.00088 Score=54.39 Aligned_cols=78 Identities=23% Similarity=0.299 Sum_probs=65.8
Q ss_pred hhhhhh--cccccccCCCCChHHHHHHHhcC--CCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHH
Q psy14772 9 VNRVIQ--VTELDLKTQALPLARIKKIMKLD--DGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 84 (191)
Q Consensus 9 ~~~e~~--~~~~d~k~~~LPlARIKKIMK~D--~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa 84 (191)
...||+ -...|+--..+|.+|+-|-+-.+ .+. ++..+|..++..|+|.|+-.|-+.|+.+|.+.||.||...||.
T Consensus 48 aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~-Rf~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~ 126 (136)
T PLN00121 48 ALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL-RFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126 (136)
T ss_pred HHHHHHHhccccccccccccHHHHHHHHHHHhCccc-eeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchhhHH
Confidence 568888 55667777889999965544433 444 9999999999999999999999999999999999999999998
Q ss_pred HHH
Q psy14772 85 MAI 87 (191)
Q Consensus 85 ~AV 87 (191)
.+.
T Consensus 127 L~~ 129 (136)
T PLN00121 127 LAR 129 (136)
T ss_pred HHH
Confidence 774
No 40
>PTZ00018 histone H3; Provisional
Probab=97.21 E-value=0.001 Score=54.05 Aligned_cols=78 Identities=22% Similarity=0.282 Sum_probs=65.6
Q ss_pred hhhhhh--cccccccCCCCChHHHHHHHhc--CCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHH
Q psy14772 9 VNRVIQ--VTELDLKTQALPLARIKKIMKL--DDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 84 (191)
Q Consensus 9 ~~~e~~--~~~~d~k~~~LPlARIKKIMK~--D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa 84 (191)
...||+ -...|+--..+|.+|+-|-+-. ..++ ++..+|..++..|+|.|+-.|-+.++.+|.+.||.||...||.
T Consensus 48 aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~-rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~ 126 (136)
T PTZ00018 48 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL-RFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126 (136)
T ss_pred HHHHHHHHcccchhccccccHHHHHHHHHHHcCCcc-eeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHH
Confidence 568888 4556677788999996554433 2454 9999999999999999999999999999999999999999998
Q ss_pred HHH
Q psy14772 85 MAI 87 (191)
Q Consensus 85 ~AV 87 (191)
.+.
T Consensus 127 L~~ 129 (136)
T PTZ00018 127 LAR 129 (136)
T ss_pred HHH
Confidence 764
No 41
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T.
Probab=97.21 E-value=0.00055 Score=63.68 Aligned_cols=64 Identities=20% Similarity=0.248 Sum_probs=46.1
Q ss_pred cccCCCCChHHHHHHHhcC-----CCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHH
Q psy14772 19 DLKTQALPLARIKKIMKLD-----DGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRND 82 (191)
Q Consensus 19 d~k~~~LPlARIKKIMK~D-----~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~D 82 (191)
-.....||-+-|||+...= -.-++|+++|.-+|.+|+++|.+.|+..=-.+|.+.|||||..+|
T Consensus 346 gi~~P~lP~~~vK~la~~~ak~s~~sK~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTIdesD 414 (414)
T PF15511_consen 346 GIPYPSLPPGVVKKLAQHFAKSSGGSKMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTIDESD 414 (414)
T ss_dssp ------S-HHHHHHHHHHHH-------S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred CCCCCCCCccHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4456789999999987642 134689999999999999999999999999999999999998876
No 42
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=96.89 E-value=0.0053 Score=44.70 Aligned_cols=62 Identities=21% Similarity=0.275 Sum_probs=50.4
Q ss_pred ChHHHHHHHhcC--CCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCe-eCHHHHHHHH
Q psy14772 26 PLARIKKIMKLD--DGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRT-LQRNDIAMAI 87 (191)
Q Consensus 26 PlARIKKIMK~D--~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKT-I~~~DIa~AV 87 (191)
|..=|.||++.. .+-.+||++|..++++-.++|+.+-+.+|+..++..+... |..+||..+.
T Consensus 1 p~~li~rll~~~f~~~~tkIs~dal~l~~eyl~iFV~EAv~Ra~~~a~~e~~~~~le~e~LEki~ 65 (72)
T PF09415_consen 1 PPELIARLLHEHFKDDKTKISKDALKLSAEYLRIFVREAVARAAEQAEAEGDEGFLEVEHLEKIL 65 (72)
T ss_dssp -CHHHHHHHCTTSSSTT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSEE-HHHHHHHC
T ss_pred ChHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 455688999863 5777999999999999999999999999999998888777 9999998865
No 43
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=96.84 E-value=0.0022 Score=48.66 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=51.6
Q ss_pred ccccCCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCeeCHHHHHHHHhc
Q psy14772 18 LDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDN-KRRTLQRNDIAMAITK 89 (191)
Q Consensus 18 ~d~k~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~-kRKTI~~~DIa~AV~~ 89 (191)
+-++.+.||-+.|||||..--+...||.....+++-.+.+|+-+|.++|.+...+. ...-|++.||..|..+
T Consensus 17 e~fRRs~~~k~~ikkli~~~~~~qsv~~~v~i~v~g~aKvFVGEiVE~A~~Vq~~~~~~~pl~P~hlreA~rr 89 (90)
T PF04719_consen 17 EAFRRSSFNKAAIKKLINQVLGNQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGETGPLQPDHLREAYRR 89 (90)
T ss_dssp HHHHH----HHHHHHHHHHHHS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS--HHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHh
Confidence 34577889999999999986554689999999999999999999999999987653 3558999999998753
No 44
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=96.42 E-value=0.012 Score=43.33 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=49.2
Q ss_pred HHHHHhcC--CCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCc
Q psy14772 30 IKKIMKLD--DGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDM 92 (191)
Q Consensus 30 IKKIMK~D--~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~ 92 (191)
|-||...- +.-..+|.++..+++..+=.++..++..-...|++.||+||+.+||..+..+++.
T Consensus 11 v~ki~ee~~~~~~~~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~Rrn~~ 75 (76)
T PF15630_consen 11 VGKIVEEEAKEKGVEVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLARRNPS 75 (76)
T ss_dssp HHHHHHHCCCCTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTTT-HH
T ss_pred HHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhhcCCC
Confidence 55666653 2334689999999999999999999999889999999999999999999988764
No 45
>KOG3467|consensus
Probab=96.18 E-value=0.021 Score=43.81 Aligned_cols=63 Identities=24% Similarity=0.297 Sum_probs=56.6
Q ss_pred HHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCC
Q psy14772 28 ARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYD 91 (191)
Q Consensus 28 ARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e 91 (191)
--|+||.+- ..|.+|+---..-+..+...|++.....|..++++.|||||+..||..++++.-
T Consensus 33 paIRRlARr-~GVkRi~G~~yeE~~~~~k~fl~n~i~~A~~yt~HAKRKTvT~~dvv~~LKR~G 95 (103)
T KOG3467|consen 33 PAIRRLARR-GGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 95 (103)
T ss_pred HHHHHHHHh-cCcchhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeHHHHHHHHHHcC
Confidence 357888887 779999998888899999999999999999999999999999999999987653
No 46
>smart00427 H2B Histone H2B.
Probab=96.00 E-value=0.029 Score=42.67 Aligned_cols=58 Identities=22% Similarity=0.247 Sum_probs=50.9
Q ss_pred HHHHHhc-CCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHh
Q psy14772 30 IKKIMKL-DDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAIT 88 (191)
Q Consensus 30 IKKIMK~-D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~ 88 (191)
|.|++|. .||. .||..|.-.+.--.--+.+.++.+|...+..+||+||+.++|..||.
T Consensus 7 i~kvLKqVhpd~-giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvr 65 (89)
T smart00427 7 IYKVLKQVHPDT-GISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVR 65 (89)
T ss_pred HHHHHHHhCCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHH
Confidence 7788885 4888 68888888888778888899999999999999999999999999985
No 47
>KOG1745|consensus
Probab=95.60 E-value=0.011 Score=48.21 Aligned_cols=80 Identities=24% Similarity=0.225 Sum_probs=68.8
Q ss_pred hhhhhh--cccccccCCCCChHHHHH-HHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHH
Q psy14772 9 VNRVIQ--VTELDLKTQALPLARIKK-IMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAM 85 (191)
Q Consensus 9 ~~~e~~--~~~~d~k~~~LPlARIKK-IMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~ 85 (191)
.++||+ -...|+--..+|..|.-| |++.--..-++-+.|..++-.|.|.|+-.|-..++-+|.+.||-||-+.||..
T Consensus 49 al~eirkyQkstdLlI~K~PFqRlvrei~q~f~~dLrfqs~Ai~ALQeA~EayLv~LfEdtnlcAihAkRVTimpkdiQl 128 (137)
T KOG1745|consen 49 ALREIRKYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQSSAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 128 (137)
T ss_pred HHHHHHHHHhhhHHHhhcCcHHHHhHHHHhcccccceehHHHHHHHHHHHHHHHHHhccccchhhhccceeEecccceeh
Confidence 678888 446677677999999888 77766444588999999999999999999999999999999999999999987
Q ss_pred HHh
Q psy14772 86 AIT 88 (191)
Q Consensus 86 AV~ 88 (191)
|..
T Consensus 129 Arr 131 (137)
T KOG1745|consen 129 ARR 131 (137)
T ss_pred hhh
Confidence 764
No 48
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=95.60 E-value=0.075 Score=38.23 Aligned_cols=61 Identities=16% Similarity=0.331 Sum_probs=47.2
Q ss_pred HHHHHHhc-CCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcC
Q psy14772 29 RIKKIMKL-DDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 29 RIKKIMK~-D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~ 90 (191)
++..+++. ||. ..+..++-.++...++.||...+..|...|++.|..||..+||...++++
T Consensus 4 ~l~~Lv~~iDp~-~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Ler~ 65 (68)
T PF03847_consen 4 KLQELVKQIDPN-EKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLERN 65 (68)
T ss_dssp HHHHHHHCC-SS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHhh
Confidence 45556664 454 47888999999999999999999999999999999999999999988764
No 49
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=95.44 E-value=0.081 Score=37.85 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=53.5
Q ss_pred HHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcC
Q psy14772 30 IKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 30 IKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~ 90 (191)
|.+|++. -+...++..|...++-.+..|+.+|+..+..+|+..+|......||..+....
T Consensus 12 va~il~~-~GF~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~~~ 71 (77)
T PF07524_consen 12 VAQILKH-AGFDSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALEEM 71 (77)
T ss_pred HHHHHHH-cCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 5566665 66778999999999999999999999999999999999999999999998654
No 50
>KOG3219|consensus
Probab=95.44 E-value=0.017 Score=49.50 Aligned_cols=71 Identities=25% Similarity=0.346 Sum_probs=60.6
Q ss_pred cccCCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCeeCHHHHHHHHhcC
Q psy14772 19 DLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTED-NKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 19 d~k~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~-~kRKTI~~~DIa~AV~~~ 90 (191)
-|+...||-+.|||+|..=-+-. |+..+.++++--..+|+-+++..|.++... +...-|++.||..|+.+.
T Consensus 107 vfRrs~f~Ka~iKkL~~~itg~~-v~~nv~Ia~~GiaKvFVGEvVEeAl~V~~~~~e~~PLqP~HIREA~rrL 178 (195)
T KOG3219|consen 107 VFRRSAFPKAQIKKLMSSITGQS-VSENVAIAMAGIAKVFVGEVVEEALDVREEWGESGPLQPKHIREAYRRL 178 (195)
T ss_pred HHHHhcCCHHHHHHHHHHHhCCc-cCcceeeeecchhhHhHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHH
Confidence 45689999999999999744333 899999999999999999999999999864 456789999999999754
No 51
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=95.39 E-value=0.018 Score=43.46 Aligned_cols=76 Identities=16% Similarity=0.157 Sum_probs=33.8
Q ss_pred HHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCC-ccccccccCCCccc
Q psy14772 30 IKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYD-MFDFLIDIVPREEV 105 (191)
Q Consensus 30 IKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e-~fdFL~DiVP~~~~ 105 (191)
|+.+|-.-.|+..-..|++.++-..+-.|+.+|+.+|...|...++++|+.+|+.-++.+++ .+.-|.+++-..+.
T Consensus 7 I~~mMy~fGD~~~P~~eTv~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR~D~~Kl~Rl~~~L~~k~~ 83 (93)
T PF02269_consen 7 IRQMMYGFGDVEEPLPETVDLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLRKDPKKLARLRELLSMKDE 83 (93)
T ss_dssp CHHHHHCTTS-SS--HHHHHHHHHHHHHHHHHHHHHHHC--------------------------------------
T ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 67788888999999999999999999999999999999999999999999999999998776 67777777765543
No 52
>PLN00155 histone H2A; Provisional
Probab=95.27 E-value=0.021 Score=40.33 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=33.3
Q ss_pred CCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHH
Q psy14772 22 TQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAEL 57 (191)
Q Consensus 22 ~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtEl 57 (191)
-+.||++||.|.++..--..+|++.|++.++..+|.
T Consensus 22 gL~FPVgri~r~Lr~g~~a~Rvga~apVYlAAVLEY 57 (58)
T PLN00155 22 GLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEY 57 (58)
T ss_pred ccccchHHHHHHHhcCChhhcccCCcHHHHHHHHHh
Confidence 478999999999999888889999999999999885
No 53
>PLN00158 histone H2B; Provisional
Probab=94.78 E-value=0.12 Score=41.06 Aligned_cols=59 Identities=20% Similarity=0.225 Sum_probs=51.6
Q ss_pred HHHHHHhc-CCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHh
Q psy14772 29 RIKKIMKL-DDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAIT 88 (191)
Q Consensus 29 RIKKIMK~-D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~ 88 (191)
=|.|++|. .||.+ ||..|..++.--..-+.+.|+.+|...+..++|+||+.++|..||.
T Consensus 32 YI~kVLKQVhPd~g-IS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvr 91 (116)
T PLN00158 32 YIYKVLKQVHPDTG-ISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVR 91 (116)
T ss_pred HHHHHHHHhCCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHH
Confidence 48888885 58885 6888888888888888899999999999999999999999999985
No 54
>PF15510 CENP-W: Centromere kinetochore component W
Probab=94.77 E-value=0.081 Score=40.85 Aligned_cols=66 Identities=20% Similarity=0.298 Sum_probs=51.8
Q ss_pred CCCChHHHHHHHhcCCCccccCccHHHH--------------HHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHh
Q psy14772 23 QALPLARIKKIMKLDDGVKMISAEAPML--------------FSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAIT 88 (191)
Q Consensus 23 ~~LPlARIKKIMK~D~DV~~IS~EA~vl--------------iakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~ 88 (191)
..-|-+-+||++|.....-++...+-.+ +---|=+|++.|+++|-..|-++|..+|+.+||..|.+
T Consensus 15 rkaPrgfLkrv~Kr~KphlRl~~~~Dllv~~~~f~~~~~~~~vhLncLLFvhrLAEEaRtnA~EnK~~~Ik~~Hv~AaaK 94 (102)
T PF15510_consen 15 RKAPRGFLKRVFKRQKPHLRLETSGDLLVRFCPFSGWQWGGEVHLNCLLFVHRLAEEARTNACENKCGTIKKEHVLAAAK 94 (102)
T ss_pred HhCchHHHHHHHHhcCCceeecccccHHHhhcccccccccceeehhHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 4568899999999653333554444444 55567899999999999999999999999999987754
No 55
>PTZ00463 histone H2B; Provisional
Probab=94.38 E-value=0.17 Score=40.28 Aligned_cols=58 Identities=21% Similarity=0.187 Sum_probs=50.9
Q ss_pred HHHHHhc-CCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHh
Q psy14772 30 IKKIMKL-DDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAIT 88 (191)
Q Consensus 30 IKKIMK~-D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~ 88 (191)
|.|++|. .||.+ ||..|..++.--..-..+.++.+|...+..++|+||+..+|..||.
T Consensus 34 I~KVLKqVhPd~g-IS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvr 92 (117)
T PTZ00463 34 IFKVLKQVHPDTG-ISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIR 92 (117)
T ss_pred HHHHHHhhCCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHh
Confidence 8888885 58885 6888888888777788889999999999999999999999999985
No 56
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=93.72 E-value=0.35 Score=36.62 Aligned_cols=75 Identities=17% Similarity=0.173 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCC-ccccccccCCCc
Q psy14772 28 ARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYD-MFDFLIDIVPRE 103 (191)
Q Consensus 28 ARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e-~fdFL~DiVP~~ 103 (191)
.-|+.+|-.-.|+..-..|++.++-..+-.|+.+|+.+|...|. .++..++.+|+.-++.+++ .+.-|..++...
T Consensus 6 ~ei~~mmy~~GD~~~P~~eTv~llE~iv~~~i~~l~~~a~~~A~-~r~~k~~~eD~~FliR~D~~Kl~Rl~~lL~~k 81 (92)
T cd07978 6 KEIRQMMYGFGDVQNPLPETVDLLEDIVVEYIIELCHKAAEVAQ-RRRGKVKVEDLIFLLRKDPKKLARLRELLSMK 81 (92)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34788899889999999999999999999999999999999998 4444569999999998876 667777766543
No 57
>KOG1744|consensus
Probab=93.44 E-value=0.3 Score=39.48 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=44.5
Q ss_pred HHHHHh-cCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHh
Q psy14772 30 IKKIMK-LDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAIT 88 (191)
Q Consensus 30 IKKIMK-~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~ 88 (191)
|.|++| .+||.+ |+.+|.-++.--.-.+++.++.+|...|..+||.||.-.+|..++.
T Consensus 43 v~kvlk~Vhpd~g-is~~a~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~r 101 (127)
T KOG1744|consen 43 VYKVLKQVHPDLG-ISSKAMGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVR 101 (127)
T ss_pred hhhhhhcccCCCC-cCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHH
Confidence 344666 458866 6666665555444555899999999999999999999999999885
No 58
>KOG1142|consensus
Probab=91.85 E-value=0.3 Score=43.58 Aligned_cols=71 Identities=15% Similarity=0.283 Sum_probs=57.5
Q ss_pred CChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCcccc
Q psy14772 25 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDF 95 (191)
Q Consensus 25 LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdF 95 (191)
|-..++..+|+.=..-..+-.|+-.+|..-++-||+.++..|...|++.|..||-.+||...++++-.+.|
T Consensus 155 l~k~kl~dLvqqId~~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLEr~~Nm~i 225 (258)
T KOG1142|consen 155 LSKRKLDDLVQQIDGTTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLERNFNMEI 225 (258)
T ss_pred ccccchhHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeeeccccccC
Confidence 33345555555433345778889999999999999999999999999999999999999999988765554
No 59
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=91.41 E-value=0.98 Score=36.31 Aligned_cols=66 Identities=20% Similarity=0.200 Sum_probs=45.2
Q ss_pred HHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCcccc
Q psy14772 29 RIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDF 95 (191)
Q Consensus 29 RIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdF 95 (191)
-|..|+|. -+|......++..+-.-+-.++.++...|..+|.+.+|++|..+||..||+..-.+.|
T Consensus 17 ~i~~iL~~-~Gv~~yeprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~~r~~~~f 82 (129)
T PF02291_consen 17 VIHLILKS-MGVTEYEPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQSRLDHSF 82 (129)
T ss_dssp HHHHHHHH-TT---B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHHHT-----
T ss_pred HHHHHHHH-cCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHhhhc
Confidence 46667776 4676666677666666667789999999999999999999999999999985544444
No 60
>KOG3423|consensus
Probab=89.03 E-value=2.3 Score=36.04 Aligned_cols=71 Identities=27% Similarity=0.348 Sum_probs=57.7
Q ss_pred cccCCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhC--------------CCCeeCHHHHH
Q psy14772 19 DLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDN--------------KRRTLQRNDIA 84 (191)
Q Consensus 19 d~k~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~--------------kRKTI~~~DIa 84 (191)
|--+..+|=+-+--+|+. .++...-.-..-|++-|+.-||..++..|+.+++-+ |+-|++.+||.
T Consensus 81 ddYtP~IPDavt~~yL~~-aGf~~~D~rv~RLvsLaAQKfvSDIa~DA~Q~~k~r~~~~~~~~k~~~kdkK~tLtmeDL~ 159 (176)
T KOG3423|consen 81 DDYTPTIPDAVTDHYLKK-AGFQTSDPRVKRLVSLAAQKFVSDIANDALQHSKIRTKTAIGKDKKQAKDKKYTLTMEDLS 159 (176)
T ss_pred hcCCCCCcHHHHHHHHHh-cCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccceeeeHHHHH
Confidence 344677999999999998 455566666778999999999999999999998632 35689999999
Q ss_pred HHHhcC
Q psy14772 85 MAITKY 90 (191)
Q Consensus 85 ~AV~~~ 90 (191)
.|+++.
T Consensus 160 ~AL~Ey 165 (176)
T KOG3423|consen 160 PALAEY 165 (176)
T ss_pred HHHHHh
Confidence 998764
No 61
>PF05236 TAF4: Transcription initiation factor TFIID component TAF4 family; InterPro: IPR007900 Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of a multiprotein complex around the mRNA start site. Transcription factor TFIID is one of the general factors involved in this process. Yeast TFIID comprises the TATA binding protein and 14 TBP-associated factors (TAFIIs), nine of which contain histone-fold domains (IPR007124 from INTERPRO). The C-terminal region of the TFIID-specific yeast TAF4 (yTAF4) containing the HFD shares strong sequence similarity with Drosophila (d)TAF4 and human TAF4. A structure/function analysis of yTAF4 demonstrates that the HFD, a short conserved C-terminal domain (CCTD), and the region separating them are all required for yTAF4 function. This region of similarity is found in Transcription initiation factor TFIID component TAF4 []. ; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_C.
Probab=88.68 E-value=0.87 Score=39.71 Aligned_cols=44 Identities=27% Similarity=0.320 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14772 28 ARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTED 72 (191)
Q Consensus 28 ARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~ 72 (191)
.+|.+|++... +..+..|.+.+|+-|||..+..|...+...|++
T Consensus 51 ~~i~~i~~~~g-~~~~~~d~l~llS~A~e~rLr~lie~~~~~s~h 94 (264)
T PF05236_consen 51 KRIQKIAKKHG-LKSVDEDVLELLSLATEERLRNLIEKAIVLSRH 94 (264)
T ss_dssp HHHHHHHHCTT---EE-TCHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHcC-CcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68889998755 778999999999999999999999999988875
No 62
>KOG2549|consensus
Probab=87.63 E-value=1.9 Score=42.43 Aligned_cols=62 Identities=23% Similarity=0.308 Sum_probs=55.3
Q ss_pred hHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhc
Q psy14772 27 LARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 89 (191)
Q Consensus 27 lARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~ 89 (191)
-.-+|-+.++ -++..++.||..+++.=.|.=+++++.+|.+...+.||.+++-+||..|+..
T Consensus 14 ~Es~k~vAEs-lGi~nl~deaa~~La~dv~yrikEI~Q~aaKfm~hskR~kLtv~DV~~ALr~ 75 (576)
T KOG2549|consen 14 KESVKVVAES-LGITNLNDEAALLLAEDVEYRIKEIVQDAAKFMVHSKRTKLTVDDVDYALRS 75 (576)
T ss_pred HHHHHHHHHH-hCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHhh
Confidence 4556666665 7788999999999999999999999999999999999999999999999863
No 63
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus
Probab=87.39 E-value=3.1 Score=28.65 Aligned_cols=48 Identities=19% Similarity=0.181 Sum_probs=36.8
Q ss_pred CCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14772 24 ALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTED 72 (191)
Q Consensus 24 ~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~ 72 (191)
.+|=+-+.-+|+. .++..--.-..-+++-|++-|+.+++..|+.+++-
T Consensus 2 ~IPD~v~~~yL~~-~G~~~~D~rv~RLvSLaaQKFisdI~~dA~q~~k~ 49 (51)
T PF03540_consen 2 TIPDEVTDYYLER-SGFQTSDPRVKRLVSLAAQKFISDIANDAMQYCKI 49 (51)
T ss_pred CCCHHHHHHHHHH-CCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777777776 34444445566799999999999999999999763
No 64
>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are
Probab=87.12 E-value=1.7 Score=36.86 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=47.6
Q ss_pred HHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhC------CCCeeCHHHHHHHHh
Q psy14772 28 ARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDN------KRRTLQRNDIAMAIT 88 (191)
Q Consensus 28 ARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~------kRKTI~~~DIa~AV~ 88 (191)
.+|.+|++. .++..++.|...+|+.|||.++..|.......+++. ..+....+|+..-+.
T Consensus 52 ~~~~~i~~~-~g~~~~~~d~~~lis~a~e~rlr~li~k~~~~s~hR~~~~~~~~r~~~~sdvr~qL~ 117 (212)
T cd08045 52 KKIRKIAKK-HGLKEVDEDVLDLISLALEERLRNLLEKLIEVSEHRVDSEKEDERYEITSDVRKQLR 117 (212)
T ss_pred HHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCceeecchHHHHHH
Confidence 567777776 445589999999999999999999999998888753 345666778776653
No 65
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=74.63 E-value=10 Score=35.63 Aligned_cols=62 Identities=23% Similarity=0.249 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcC
Q psy14772 28 ARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 28 ARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~ 90 (191)
.-||-...+ -++..|..|+.-+++--.|.=|.+++.+|.....++||..++-+||..|....
T Consensus 9 et~KdvAes-lGi~Ni~Dd~l~alamDlEYRI~ev~qea~KFmvhSKRtvLt~dDis~ALr~l 70 (450)
T COG5095 9 ETLKDVAES-LGISNIDDDALRALAMDLEYRIKEVCQEASKFMVHSKRTVLTIDDISYALRSL 70 (450)
T ss_pred HHHHHHHHH-cCCcccccHHHHHHHHhHHHHHHHHHHHHHHHhhcccceeeeHHhHHHHHHhc
Confidence 345555444 57889999999999999999999999999999999999999999999998643
No 66
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=67.19 E-value=7.7 Score=25.53 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=28.2
Q ss_pred hHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHH
Q psy14772 27 LARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHE 61 (191)
Q Consensus 27 lARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~ 61 (191)
+.||+|++....+...-..||-.++.+|-++..++
T Consensus 4 l~kI~kLLalA~~~~~~~~EA~~A~~kAq~Lm~ky 38 (43)
T PF10979_consen 4 LEKIRKLLALAESTGSNEHEAEAALAKAQRLMAKY 38 (43)
T ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 57999999998766555569999999999886554
No 67
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex
Probab=63.19 E-value=14 Score=31.95 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=33.7
Q ss_pred HHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14772 28 ARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHT 70 (191)
Q Consensus 28 ARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A 70 (191)
.|+-.|... .+...||.|++.++.-|+|.|++.|...+.+.+
T Consensus 210 ~Rm~~ia~e-~GL~gvs~~~a~ll~~ale~~LK~lI~s~l~~~ 251 (252)
T PF12767_consen 210 KRMEQIAWE-HGLGGVSDDCANLLNLALEVHLKNLIKSCLDLV 251 (252)
T ss_pred HHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455555544 455779999999999999999999999887653
No 68
>COG5162 Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=57.99 E-value=62 Score=27.70 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=42.2
Q ss_pred ccccccCCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14772 16 TELDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTE 71 (191)
Q Consensus 16 ~~~d~k~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~ 71 (191)
...|-.+..+|=+-+.=-|.. .++...-.-..-|++-++.-||..++..||++.+
T Consensus 80 ~~mDsy~PliPd~v~DYyl~k-~Gf~~~D~rvKkLl~L~aqKFvsDiA~dayqYsr 134 (197)
T COG5162 80 QNMDSYTPLIPDSVTDYYLEK-AGFVTSDQRVKKLLSLLAQKFVSDIAVDAYQYSR 134 (197)
T ss_pred HhcccCCCCccHHHHHHHHHh-cCceeccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677888888777776 3454555666779999999999999999998754
No 69
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=56.99 E-value=37 Score=25.45 Aligned_cols=62 Identities=24% Similarity=0.269 Sum_probs=48.4
Q ss_pred ccCCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHH------HHHHHHHHHHHHhhCCCCeeCHHHHHHHHh
Q psy14772 20 LKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELF------IHELTIRAWIHTEDNKRRTLQRNDIAMAIT 88 (191)
Q Consensus 20 ~k~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElF------I~~La~~A~~~A~~~kRKTI~~~DIa~AV~ 88 (191)
..+..||-.-|++...++++ +..++..+.+-| ...+.+-|+.+|--.+...|..+||..|+.
T Consensus 27 ~~Na~l~~~~l~~~~~l~~~-------~~~~l~~~~~~~~lS~R~~~rilrvARTIADL~~~~~I~~~hi~EAl~ 94 (96)
T PF13335_consen 27 KCNAQLPGEELRKYCPLSSE-------AKKLLEQAAEKLNLSARGYHRILRVARTIADLEGSERITREHIAEALS 94 (96)
T ss_pred CccccCCHHHHHhHcCCCHH-------HHHHHHHHHHHcCcCHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHh
Confidence 35678999999988776654 444676666655 456777788999889999999999999985
No 70
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=52.76 E-value=24 Score=29.46 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=43.0
Q ss_pred ccCccHHHHHHHHHHH---HHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCC
Q psy14772 42 MISAEAPMLFSKAAEL---FIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYD 91 (191)
Q Consensus 42 ~IS~EA~vliakAtEl---FI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e 91 (191)
.++.++...+.+.+.= .|..++..++..|..++.+.|+.++|..++....
T Consensus 215 ~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 215 VFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEID 267 (269)
T ss_pred CcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhh
Confidence 5788999888888763 6999999999998888889999999999997643
No 71
>KOG4336|consensus
Probab=49.30 E-value=50 Score=30.58 Aligned_cols=64 Identities=17% Similarity=0.176 Sum_probs=56.2
Q ss_pred hHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcC
Q psy14772 27 LARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 27 lARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~ 90 (191)
++.|--+|..+.+...|++-|..-+..+..-.|.++.+.+..+|+..+|...++.||+..+-+.
T Consensus 7 l~~VV~~Ll~~~gfd~is~~aletlvell~~yi~eigrq~~n~celagRT~pT~~Dv~l~Li~m 70 (323)
T KOG4336|consen 7 LAPVVSNLLKTKGFDSISNAALETLVELLQSYIREIGRQLHNYCELAGRTIPTQGDVKLTLIEM 70 (323)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHh
Confidence 4566777787788888999999999999999999999999999999999999999999887543
No 72
>KOG2389|consensus
Probab=47.30 E-value=62 Score=30.34 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=55.2
Q ss_pred CCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhc
Q psy14772 23 QALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 89 (191)
Q Consensus 23 ~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~ 89 (191)
..|=..+|..|+..= +....-..|.-.++-.+..||+.|++.|..++...+|--.+..||..|+..
T Consensus 28 ~sla~~avaQIcqsl-g~~~~~~sale~Ltd~~~qyvQ~lgk~a~~~~n~anR~epnl~Div~Al~d 93 (353)
T KOG2389|consen 28 FSLARVAVAQICQSL-GYSSTQNSALETLTDVLQQYVQNLGKTAHRYSNLANRTEPNLFDIVLALQD 93 (353)
T ss_pred HHHHHHHHHHHHHhc-CCcccccHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCccHHHHHHHHHH
Confidence 335556788999883 344566669999999999999999999999999999999999999999864
No 73
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=45.50 E-value=89 Score=27.78 Aligned_cols=64 Identities=22% Similarity=0.227 Sum_probs=45.3
Q ss_pred hHHHHHHHhcC--CC--ccccCccHHHHHHHHHHH------HHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcC
Q psy14772 27 LARIKKIMKLD--DG--VKMISAEAPMLFSKAAEL------FIHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 27 lARIKKIMK~D--~D--V~~IS~EA~vliakAtEl------FI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~ 90 (191)
..-++.|++.- .. -..++.++.-.+++.+.- .+..++..|+..|...++.+|+.+||..|+...
T Consensus 209 ~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 209 ADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 45566666531 11 225788888777776633 344667888888888888999999999999765
No 74
>KOG1657|consensus
Probab=38.95 E-value=3.2 Score=36.49 Aligned_cols=74 Identities=24% Similarity=0.154 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCccccccccCCCcccccCCCCCCCCCcccCCCCCCCcceeeehhhHH
Q psy14772 61 ELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDIVPREEVKTATGPHRRDDATKTALNPDQVQYYFQLAQQH 137 (191)
Q Consensus 61 ~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~DiVP~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (191)
.+...++.+....+|.++..-.+...++..+.++|+.+.+|....|+-. +..+. ++.......+.||+-....-
T Consensus 36 ~~~~~~~~~~~~~~~~~l~~fw~~~~~e~e~~~d~~~~~lPlaRiKkim--K~ded-v~mI~~Eapvl~aka~E~Fi 109 (236)
T KOG1657|consen 36 CLDPEASIITGDVSRQQLQSFWSKQAIEKEGQLDFKNHILPLARIKKIM--KSDED-VSMITAEAPVLFAKACELFI 109 (236)
T ss_pred ecchhhhhcccchhhHHHHhhhhccccccccccchhhccCcHhhccccc--ccccc-ccccchhHHHHHHHHHHHHH
Confidence 5566666655444577787778888877888999999999999988766 33333 33333444566666555444
No 75
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=38.33 E-value=1.3e+02 Score=29.56 Aligned_cols=63 Identities=10% Similarity=-0.030 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCCccccCccHHHHHHHH-H------------HHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcC
Q psy14772 28 ARIKKIMKLDDGVKMISAEAPMLFSKA-A------------ELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 28 ARIKKIMK~D~DV~~IS~EA~vliakA-t------------ElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~ 90 (191)
..|.+.++.+.....++.+|...+.+- + ..=+..|.++|...|...++..|+.+||..|++..
T Consensus 316 ~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 316 QFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 445566666545567888888776532 2 34567788888888888888999999999998644
No 76
>KOG3334|consensus
Probab=38.11 E-value=1.5e+02 Score=24.62 Aligned_cols=42 Identities=17% Similarity=0.159 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCcccccc
Q psy14772 56 ELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLI 97 (191)
Q Consensus 56 ElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~ 97 (191)
=-++..+...|..++.+.++.+|..+||..|+...-.+.|--
T Consensus 44 ~rYtt~vL~DA~vys~HA~ka~i~~eDVrlA~~~~~~~sf~~ 85 (148)
T KOG3334|consen 44 YRYTTTVLDDAKVYSSHAKKATIDAEDVRLAIQMRVDHSFTP 85 (148)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHhccccCC
Confidence 345777888899999999999999999999998765566644
No 77
>COG5248 TAF19 Transcription initiation factor TFIID, subunit TAF13 [Transcription]
Probab=36.77 E-value=1.5e+02 Score=23.80 Aligned_cols=73 Identities=12% Similarity=0.113 Sum_probs=52.4
Q ss_pred ChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCC-ccccccccC
Q psy14772 26 PLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYD-MFDFLIDIV 100 (191)
Q Consensus 26 PlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e-~fdFL~DiV 100 (191)
=.--||-+|=.=.|+..=..+...++-.-.--++..++..|+..|+ .|..++.+|+.-|+.+++ .+.=..+++
T Consensus 11 F~KDikslmYayGDvv~P~~dt~~~L~e~V~dY~~~~ctna~~~Aq--~rnK~k~eDfkfaLr~DpkKlgRveeLl 84 (126)
T COG5248 11 FMKDIKSLMYAYGDVVAPRYDTAEALHEYVLDYMSILCTNAHNMAQ--VRNKTKTEDFKFALRRDPKKLGRVEELL 84 (126)
T ss_pred HHHHHHHHHHHhCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH--hcccchHHHHHHHHhhChHHHhHHHHHH
Confidence 3445677777767777777777777777777778888888888887 556677899999998876 343334443
No 78
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=34.95 E-value=1.9e+02 Score=25.33 Aligned_cols=50 Identities=14% Similarity=0.038 Sum_probs=36.5
Q ss_pred ccCccHHHHHHHHHH------HHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCC
Q psy14772 42 MISAEAPMLFSKAAE------LFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYD 91 (191)
Q Consensus 42 ~IS~EA~vliakAtE------lFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e 91 (191)
.++.++.-++++-++ ..+..++..|+..|...++..|+.+||..|+....
T Consensus 220 ~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 220 VLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE 275 (365)
T ss_pred CCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 477777766655443 24455777888888888888999999999887653
No 79
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=31.54 E-value=1.6e+02 Score=28.61 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=39.0
Q ss_pred HHHHHhcCCCccccCccHHHHHHHHHH-----------HHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcC
Q psy14772 30 IKKIMKLDDGVKMISAEAPMLFSKAAE-----------LFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 30 IKKIMK~D~DV~~IS~EA~vliakAtE-----------lFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~ 90 (191)
|+.+++. .+..-++.+|+..+-+..- .-+..|..+|...|...+++.|+.+||..|++..
T Consensus 436 i~~~~~~-~~L~~~~~~Av~~li~~~~R~~q~kLsl~~~~l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~r 506 (509)
T PF13654_consen 436 IASICQK-EGLPPFDRSAVARLIEYSARLDQDKLSLRFSWLADLLREANYWARKEGAKVITAEHVEQAIEER 506 (509)
T ss_dssp HHHHHHH-HSS--BBHHHHHHHHHHHHHCC-SEEE--HHHHHHHHHHHHHHHHHCT-SSB-HHHHHHHHHH-
T ss_pred HHHHHHh-CCCCCCCHHHHHHHHHHHHHHhCCEeCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHcc
Confidence 4455554 3455566666555444331 2467888999999999999999999999999764
No 80
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=31.43 E-value=1e+02 Score=29.80 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=45.5
Q ss_pred CCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHH------HHHHHHHHHHHHhhCCCCeeCHHHHHHHHh
Q psy14772 22 TQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELF------IHELTIRAWIHTEDNKRRTLQRNDIAMAIT 88 (191)
Q Consensus 22 ~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElF------I~~La~~A~~~A~~~kRKTI~~~DIa~AV~ 88 (191)
+.++|-..+++....+ .++..++..|.+.| ...+.+-|+..|.-.++..|..+||..|+.
T Consensus 432 N~~l~~~~l~~~~~l~-------~~~~~~l~~a~~~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 432 NADLNSDEIEQFCKLS-------AIDANDLEGALNKLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred cccCCHHHHHhhcCCC-------HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 5667777777765554 45555677666665 566777888999999999999999999985
No 81
>KOG3901|consensus
Probab=25.72 E-value=3.4e+02 Score=21.57 Aligned_cols=68 Identities=18% Similarity=0.084 Sum_probs=46.7
Q ss_pred HHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCC-ccccccccCCC
Q psy14772 32 KIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYD-MFDFLIDIVPR 102 (191)
Q Consensus 32 KIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e-~fdFL~DiVP~ 102 (191)
-.|=.=.|+..=-.+++.++---.-.||.+|+..|.... +|..++.+|+.-++.+++ .|.=-+|++-.
T Consensus 17 ~mmYgfGDd~nP~~~tv~~Le~iV~~Yi~elt~~a~~~g---~rgk~~veD~~f~lRkDpkK~~Rv~eLL~m 85 (109)
T KOG3901|consen 17 SMMYGFGDDVNPYPETVDLLEDIVLEYITELTHAAMEIG---KRGKVKVEDFKFLLRKDPKKLGRVKELLAM 85 (109)
T ss_pred HHHHhcCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHhc---ccCceeHHHHHHHHHhChHHHhHHHHHHHh
Confidence 334333455555567777777777777777777766654 677788999999998877 56666666654
No 82
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=24.48 E-value=1.2e+02 Score=30.62 Aligned_cols=41 Identities=17% Similarity=0.086 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhCCCCeeCHHHHHHHHhcCC-ccccccccCC
Q psy14772 61 ELTIRAWIHTEDNKRRTLQRNDIAMAITKYD-MFDFLIDIVP 101 (191)
Q Consensus 61 ~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e-~fdFL~DiVP 101 (191)
.|...|...|...+++-|+.+||..|+++.. .-.||.+-..
T Consensus 370 ~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~~~~e~~l~e~~~ 411 (647)
T COG1067 370 NLVREAGDIAVSEGRKLITAEDVEEALQKRELREGQLAERYI 411 (647)
T ss_pred HHHHHhhHHHhcCCcccCcHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3455778888888999999999999997643 3356665543
No 83
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=23.89 E-value=1e+02 Score=28.40 Aligned_cols=71 Identities=18% Similarity=0.189 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCC----ccccCccHHHHHHH--HHH----HHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCcccccc
Q psy14772 28 ARIKKIMKLDDG----VKMISAEAPMLFSK--AAE----LFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLI 97 (191)
Q Consensus 28 ARIKKIMK~D~D----V~~IS~EA~vliak--AtE----lFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~ 97 (191)
.-|..|++.--+ -+.++.++.-+++. |.+ .+...+.+.|.+.|+..++.++..+|+..|....+ .+++.
T Consensus 193 ~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~-~~~~~ 271 (366)
T COG1474 193 EELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIE-RDVLE 271 (366)
T ss_pred HHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhh-HHHHH
Confidence 567777765432 23577777777662 222 47778899999999999999999999999965554 45555
Q ss_pred cc
Q psy14772 98 DI 99 (191)
Q Consensus 98 Di 99 (191)
+.
T Consensus 272 ~~ 273 (366)
T COG1474 272 EV 273 (366)
T ss_pred HH
Confidence 54
No 84
>COG5094 TAF9 Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=23.46 E-value=3.3e+02 Score=22.42 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=44.7
Q ss_pred HHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCe---eCHHHHHHHHhcCCcccc
Q psy14772 30 IKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRT---LQRNDIAMAITKYDMFDF 95 (191)
Q Consensus 30 IKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKT---I~~~DIa~AV~~~e~fdF 95 (191)
|.-|+.+ -++...+.-.+.-+-.-+-.+.+.+.+.|.-+|++.+|-. |..+||..|++..-...|
T Consensus 20 ihliL~S-lgi~~ye~~VplQLl~FAhRYTq~vl~Dalvya~htgrg~~a~l~veDvrLA~at~v~~~F 87 (145)
T COG5094 20 IHLILRS-LGIEEYEPKVPLQLLEFAHRYTQDVLEDALVYAKHTGRGHIATLGVEDVRLALATKVGRHF 87 (145)
T ss_pred HHHHHHh-cCchhhCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHHHHHHHhcCCc
Confidence 3344444 5566666666665555556678889999999998877654 555999999986555544
No 85
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=22.98 E-value=1.1e+02 Score=27.35 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=31.0
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHhhCCCCeeCHHHHHHHHhc
Q psy14772 49 MLFSKAAELF----IHELTIRAWIHTEDNKRRTLQRNDIAMAITK 89 (191)
Q Consensus 49 vliakAtElF----I~~La~~A~~~A~~~kRKTI~~~DIa~AV~~ 89 (191)
..+++.++-| +..++.+|...|...++..|+.+|+..|+..
T Consensus 318 ~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 318 EAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEK 362 (364)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 3444545433 4577888888888889999999999999875
No 86
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=22.10 E-value=1.2e+02 Score=27.86 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcC
Q psy14772 58 FIHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 58 FI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~ 90 (191)
=+..|+.+|...|...+++.|+.+|+..|+...
T Consensus 340 dl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~ 372 (389)
T PRK03992 340 DLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKV 372 (389)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 356788888888888889999999999999764
No 87
>PHA02265 hypothetical protein
Probab=21.40 E-value=3.2e+02 Score=21.13 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=38.1
Q ss_pred hcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhh----CCCCeeCHHHHHH
Q psy14772 35 KLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTED----NKRRTLQRNDIAM 85 (191)
Q Consensus 35 K~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~----~kRKTI~~~DIa~ 85 (191)
+.-|+|.+.|+.....+..|+|-| ..|+..+...++. ..--||.|.|...
T Consensus 19 ~~p~~v~~tsk~~a~~i~~~l~kf-k~ls~~~~k~t~kyl~g~eilti~y~~~ds 72 (103)
T PHA02265 19 KFPKEVDITSKSTAIAINQILDKF-KTLTEQAGKITRKYLEGQEILTIDYEYYDS 72 (103)
T ss_pred cCCCccccccchhHHHHHHHHHHH-HHHHHHHhHHHHHHcCcCeeEEeeHHHHhH
Confidence 344789999999999999999998 4678887777653 2346788877654
No 88
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=21.39 E-value=1.8e+02 Score=19.03 Aligned_cols=29 Identities=10% Similarity=0.044 Sum_probs=18.1
Q ss_pred HHHHHHHH-HHHHHhhCCCCeeCHHHHHHH
Q psy14772 58 FIHELTIR-AWIHTEDNKRRTLQRNDIAMA 86 (191)
Q Consensus 58 FI~~La~~-A~~~A~~~kRKTI~~~DIa~A 86 (191)
|+..-++. +-.+|.+.+...|+.++|..|
T Consensus 15 fvR~~~r~~~E~~Ar~~G~~~IT~e~v~~A 44 (45)
T PF08369_consen 15 FVRKKLRDAAEKYARERGYDEITVEVVDAA 44 (45)
T ss_dssp HHHHHHHHHHHHHHHHCT-SEE-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCeECHHHHHhh
Confidence 33333443 446678899999999988765
No 89
>KOG4718|consensus
Probab=20.52 E-value=1.7e+02 Score=26.07 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=42.1
Q ss_pred cCccHHHHHHHHHHHHHHH-HHHHHH-----HHHhhCCCCeeCHHHHHHHHhcCCccccccc
Q psy14772 43 ISAEAPMLFSKAAELFIHE-LTIRAW-----IHTEDNKRRTLQRNDIAMAITKYDMFDFLID 98 (191)
Q Consensus 43 IS~EA~vliakAtElFI~~-La~~A~-----~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~D 98 (191)
..++-..++.||.|.|+.. =.-.|+ ......|.|.++.+++...+.+..+.-||..
T Consensus 93 f~~nEielfrkalE~im~sed~~~asst~~~~~vlq~k~k~L~ks~iE~lLqkf~q~gwf~e 154 (235)
T KOG4718|consen 93 FTANEIELFRKALEKIMSSEDCHIASSTAYNDIVLQAKSKPLKKSRIEELLQKFIQMGWFME 154 (235)
T ss_pred CCHHHHHHHHHHHHHHHhhhHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhchhhe
Confidence 4556778999999999987 222222 2233567889999999999999888888876
No 90
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=20.06 E-value=1.3e+02 Score=28.58 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcC
Q psy14772 59 IHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 59 I~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~ 90 (191)
|..++.+|...|.+.+|..|+.+|+..|+.+.
T Consensus 393 I~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 393 IKAICTEAGLLALRERRMKVTQADFRKAKEKV 424 (438)
T ss_pred HHHHHHHHHHHHHHhcCCccCHHHHHHHHHHH
Confidence 55788889999988899999999999999764
Done!