Query psy14772
Match_columns 191
No_of_seqs 182 out of 717
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 20:14:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_C HAPE; transcription fac 100.0 1.3E-31 4.3E-36 208.5 11.2 99 4-102 21-119 (119)
2 1n1j_B NF-YC; histone-like PAI 100.0 8.3E-31 2.8E-35 197.0 10.1 95 8-102 2-97 (97)
3 1jfi_A Transcription regulator 99.9 4.6E-27 1.6E-31 177.2 7.0 85 21-105 8-92 (98)
4 2byk_A Chrac-16; nucleosome sl 99.9 7E-27 2.4E-31 186.9 8.0 87 19-105 14-101 (140)
5 2byk_B Chrac-14; nucleosome sl 99.8 1.1E-20 3.9E-25 148.7 6.9 80 21-100 6-86 (128)
6 1n1j_A NF-YB; histone-like PAI 99.8 6.4E-20 2.2E-24 136.1 7.5 80 21-103 5-85 (93)
7 1b67_A Protein (histone HMFA); 99.6 8.8E-16 3E-20 107.5 8.2 65 24-89 2-66 (68)
8 3b0c_W CENP-W, centromere prot 99.6 1E-15 3.5E-20 110.0 7.7 67 22-89 2-69 (76)
9 1jfi_B DR1 protein, transcript 99.5 1.3E-14 4.4E-19 120.2 7.2 78 21-99 12-90 (179)
10 1id3_C Histone H2A.1; nucleoso 99.5 6.7E-14 2.3E-18 110.7 8.3 77 22-98 23-99 (131)
11 2nqb_C Histone H2A; nucleosome 99.5 9.6E-14 3.3E-18 108.7 7.9 77 22-98 21-97 (123)
12 1tzy_A Histone H2A-IV; histone 99.5 1.3E-13 4.4E-18 108.8 7.9 77 22-98 23-99 (129)
13 2f8n_G Core histone macro-H2A. 99.5 1.1E-13 3.9E-18 107.9 7.3 77 22-98 20-96 (120)
14 1f66_C Histone H2A.Z; nucleoso 99.4 2.5E-13 8.6E-18 107.0 7.8 78 22-99 25-103 (128)
15 2f8n_K Histone H2A type 1; nuc 99.4 3.4E-13 1.1E-17 108.9 7.8 77 22-98 42-118 (149)
16 1ku5_A HPHA, archaeal histon; 99.3 5.1E-12 1.8E-16 89.0 8.2 65 23-88 5-69 (70)
17 2jss_A Chimera of histone H2B. 99.3 8.2E-12 2.8E-16 103.6 7.0 77 22-98 103-180 (192)
18 1f1e_A Histone fold protein; a 99.2 2.1E-11 7.3E-16 98.8 8.8 73 16-89 74-146 (154)
19 3b0c_T CENP-T, centromere prot 99.2 4.7E-11 1.6E-15 91.7 6.8 77 21-98 4-80 (111)
20 1f1e_A Histone fold protein; a 99.1 1.2E-10 4.2E-15 94.3 8.3 66 23-89 3-69 (154)
21 1tzy_D Histone H4-VI; histone- 99.1 3.7E-10 1.3E-14 85.3 8.6 67 24-91 29-95 (103)
22 2yfw_B Histone H4, H4; cell cy 99.1 3.7E-10 1.3E-14 85.4 8.3 68 23-91 28-95 (103)
23 2hue_C Histone H4; mini beta s 99.0 8.7E-10 3E-14 80.5 8.4 68 22-90 8-75 (84)
24 1id3_B Histone H4; nucleosome 99.0 1.4E-09 4.7E-14 82.4 8.4 67 23-90 27-93 (102)
25 1taf_B TFIID TBP associated fa 98.7 8.2E-08 2.8E-12 68.6 8.6 67 21-88 3-69 (70)
26 2hue_B Histone H3; mini beta s 98.3 2.4E-06 8.1E-11 62.0 7.0 64 25-88 7-71 (77)
27 4dra_A Centromere protein S; D 98.1 2.4E-06 8.1E-11 66.2 5.0 68 30-98 33-104 (113)
28 2yfv_A Histone H3-like centrom 98.1 5.2E-06 1.8E-10 62.9 6.6 80 9-88 13-98 (100)
29 1taf_A TFIID TBP associated fa 98.1 1.1E-05 3.7E-10 57.2 7.7 61 28-89 5-65 (68)
30 2ly8_A Budding yeast chaperone 98.0 9.6E-06 3.3E-10 63.4 6.9 54 38-91 60-113 (121)
31 1tzy_C Histone H3; histone-fol 98.0 6.8E-06 2.3E-10 65.3 6.1 80 9-88 48-130 (136)
32 3b0b_B CENP-S, centromere prot 98.0 6.1E-06 2.1E-10 63.2 5.5 64 30-93 25-90 (107)
33 3nqj_A Histone H3-like centrom 97.9 3.2E-05 1.1E-09 56.7 7.0 49 40-88 25-73 (82)
34 3v9r_A MHF1, uncharacterized p 97.9 4.5E-05 1.6E-09 56.7 7.6 53 41-93 31-83 (90)
35 2l5a_A Histone H3-like centrom 97.8 1.7E-05 6E-10 68.0 4.9 59 31-90 168-226 (235)
36 3nqu_A Histone H3-like centrom 97.8 3.8E-05 1.3E-09 61.4 6.4 82 7-88 45-131 (140)
37 3r45_A Histone H3-like centrom 97.8 3.3E-05 1.1E-09 62.7 5.7 82 7-88 61-147 (156)
38 3vh5_A CENP-S; histone fold, c 97.7 3.2E-05 1.1E-09 61.9 5.2 72 30-101 25-99 (140)
39 3ksy_A SOS-1, SON of sevenless 97.6 9.3E-05 3.2E-09 73.8 7.4 90 7-97 84-176 (1049)
40 3b0b_C CENP-X, centromere prot 97.2 0.0015 5.1E-08 47.6 7.7 69 20-88 4-74 (81)
41 4dra_E Centromere protein X; D 97.1 0.0026 8.8E-08 46.8 8.5 67 22-88 10-78 (84)
42 1tzy_B Histone H2B; histone-fo 97.0 0.0022 7.5E-08 50.4 7.4 59 29-88 41-100 (126)
43 1bh9_B TAFII28; histone fold, 96.9 0.0017 5.7E-08 48.0 5.7 71 18-89 10-81 (89)
44 2nqb_D Histone H2B; nucleosome 96.6 0.0046 1.6E-07 48.4 6.8 60 28-88 37-97 (123)
45 2l5a_A Histone H3-like centrom 96.5 0.0049 1.7E-07 52.9 6.6 71 18-88 8-82 (235)
46 2jss_A Chimera of histone H2B. 96.4 0.0063 2.2E-07 50.1 6.6 59 29-88 8-67 (192)
47 1h3o_B Transcription initiatio 95.0 0.12 4.1E-06 37.1 7.8 67 23-90 4-71 (76)
48 3v9r_B MHF2, uncharacterized p 94.6 0.15 5.1E-06 37.8 7.5 63 25-87 2-73 (88)
49 2ly8_A Budding yeast chaperone 84.5 1.3 4.4E-05 34.3 4.8 77 23-101 3-86 (121)
50 3kw6_A 26S protease regulatory 67.6 7.9 0.00027 26.0 4.4 42 48-89 27-72 (78)
51 1h3o_A Transcription initiatio 65.4 11 0.00036 26.9 4.8 43 28-71 10-52 (75)
52 2dzn_B 26S protease regulatory 62.2 12 0.00042 25.5 4.6 32 59-90 37-68 (82)
53 1wwi_A Hypothetical protein TT 59.2 17 0.00057 29.1 5.4 59 24-83 2-60 (148)
54 2krk_A 26S protease regulatory 57.3 15 0.00051 25.7 4.4 40 50-89 37-80 (86)
55 3aji_B S6C, proteasome (prosom 53.6 13 0.00045 25.1 3.6 32 59-90 40-71 (83)
56 3vlf_B 26S protease regulatory 50.9 15 0.00052 25.5 3.6 42 48-89 25-70 (88)
57 2v1u_A Cell division control p 48.9 50 0.0017 26.9 7.0 64 27-90 203-276 (387)
58 3k1j_A LON protease, ATP-depen 46.1 48 0.0016 30.4 7.1 52 39-90 311-375 (604)
59 1g8p_A Magnesium-chelatase 38 44.4 70 0.0024 26.0 7.2 48 42-89 267-321 (350)
60 3uk6_A RUVB-like 2; hexameric 40.1 64 0.0022 26.6 6.4 65 25-89 259-329 (368)
61 4b4t_K 26S protease regulatory 39.4 26 0.00088 31.6 4.1 42 48-89 368-413 (428)
62 1r4v_A Hypothetical protein AQ 38.3 21 0.00073 29.1 3.0 60 23-83 25-84 (171)
63 2qby_A CDC6 homolog 1, cell di 34.8 95 0.0032 25.1 6.5 68 24-91 196-273 (386)
64 3h4m_A Proteasome-activating n 31.2 51 0.0017 26.2 4.2 43 48-90 212-258 (285)
65 1lv7_A FTSH; alpha/beta domain 28.8 60 0.002 25.5 4.2 42 48-89 206-251 (257)
66 4b4t_J 26S protease regulatory 25.6 64 0.0022 29.0 4.2 42 48-89 343-388 (405)
67 4b4t_I 26S protease regulatory 24.9 67 0.0023 29.3 4.2 42 48-89 377-422 (437)
68 4b4t_L 26S protease subunit RP 22.8 77 0.0026 28.6 4.2 42 48-89 376-421 (437)
69 1ixz_A ATP-dependent metallopr 22.3 80 0.0028 24.7 3.8 40 48-87 210-253 (254)
70 4b4t_M 26S protease regulatory 21.8 72 0.0025 28.8 3.8 42 49-90 377-422 (434)
71 2qby_B CDC6 homolog 3, cell di 21.2 3.3E+02 0.011 22.1 7.6 65 25-91 197-271 (384)
72 4b4t_H 26S protease regulatory 20.4 74 0.0025 29.3 3.6 42 48-89 404-449 (467)
73 1iy2_A ATP-dependent metallopr 20.1 92 0.0032 24.9 3.8 40 48-87 234-277 (278)
No 1
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.97 E-value=1.3e-31 Score=208.54 Aligned_cols=99 Identities=65% Similarity=0.960 Sum_probs=96.0
Q ss_pred hhhhhhhhhhhcccccccCCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHH
Q psy14772 4 GEKEHVNRVIQVTELDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDI 83 (191)
Q Consensus 4 ~~~p~~~~e~~~~~~d~k~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DI 83 (191)
.+|.+.++||+....|++.+.||+||||||||.|||+++||++|++++++|||+||.+|+.+|+.+|+.+|||||+|+||
T Consensus 21 ~fw~~~~~~~e~~~~d~k~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di 100 (119)
T 4g92_C 21 TYWQHVINHLESDNHDYKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDI 100 (119)
T ss_dssp HHHHHHHHHHTCSCCCSSCCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred HHHHHHHHHHHhcccccccCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHH
Confidence 47999999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccccccccCCC
Q psy14772 84 AMAITKYDMFDFLIDIVPR 102 (191)
Q Consensus 84 a~AV~~~e~fdFL~DiVP~ 102 (191)
+.||++.|.|+||.|+||+
T Consensus 101 ~~Av~~~e~~dFL~DiVPk 119 (119)
T 4g92_C 101 AAALSKSDMFDFLIDIVPR 119 (119)
T ss_dssp HHHHTTCGGGGGGTTTCC-
T ss_pred HHHHhcCchhhHHHHhCCC
Confidence 9999999999999999996
No 2
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.97 E-value=8.3e-31 Score=197.04 Aligned_cols=95 Identities=76% Similarity=1.103 Sum_probs=77.3
Q ss_pred hhhhhhh-cccccccCCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHH
Q psy14772 8 HVNRVIQ-VTELDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMA 86 (191)
Q Consensus 8 ~~~~e~~-~~~~d~k~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~A 86 (191)
++++||+ +...|++.+.||+||||||||.|+++++||+||++++++|+|+|+.+|+.+||.+|+++|||||+|+||+.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~A 81 (97)
T 1n1j_B 2 SHMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMA 81 (97)
T ss_dssp ------------------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred cHHHHHHhcccCCcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHH
Confidence 4789999 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCccccccccCCC
Q psy14772 87 ITKYDMFDFLIDIVPR 102 (191)
Q Consensus 87 V~~~e~fdFL~DiVP~ 102 (191)
|.+.+.|+||.|+||+
T Consensus 82 v~~~e~~~FL~divP~ 97 (97)
T 1n1j_B 82 ITKFDQFDFLIDIVPR 97 (97)
T ss_dssp HTTCGGGGGGTTTSCC
T ss_pred HhcCcHHHHHHhhCCC
Confidence 9999999999999996
No 3
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.94 E-value=4.6e-27 Score=177.22 Aligned_cols=85 Identities=26% Similarity=0.311 Sum_probs=62.5
Q ss_pred cCCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCccccccccC
Q psy14772 21 KTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDIV 100 (191)
Q Consensus 21 k~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~DiV 100 (191)
..+.||++|||||||.|+|+++||++|++++++|+|+|+.+|+..||.+|+++|||||+|+||..||.+++.|+||.|++
T Consensus 8 ~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~div 87 (98)
T 1jfi_A 8 YNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANKARK 87 (98)
T ss_dssp --CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC------------
T ss_pred cCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHHhcC
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccc
Q psy14772 101 PREEV 105 (191)
Q Consensus 101 P~~~~ 105 (191)
|.+..
T Consensus 88 p~k~~ 92 (98)
T 1jfi_A 88 EAELA 92 (98)
T ss_dssp -----
T ss_pred chHhh
Confidence 98753
No 4
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.93 E-value=7e-27 Score=186.88 Aligned_cols=87 Identities=26% Similarity=0.457 Sum_probs=69.8
Q ss_pred cccCCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCeeCHHHHHHHHhcCCcccccc
Q psy14772 19 DLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHT-EDNKRRTLQRNDIAMAITKYDMFDFLI 97 (191)
Q Consensus 19 d~k~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A-~~~kRKTI~~~DIa~AV~~~e~fdFL~ 97 (191)
....+.||+||||||||.||++++||++|++++++|||+||++|+.+||.+| +.+|||||+|+||+.||.+.+.|+||.
T Consensus 14 ~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 14 PTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp ---------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred cccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHh
Confidence 3467899999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccCCCccc
Q psy14772 98 DIVPREEV 105 (191)
Q Consensus 98 DiVP~~~~ 105 (191)
|+||.+..
T Consensus 94 divP~ki~ 101 (140)
T 2byk_A 94 QIVPQKIR 101 (140)
T ss_dssp TTSCSCC-
T ss_pred ccccchhh
Confidence 99998763
No 5
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.82 E-value=1.1e-20 Score=148.70 Aligned_cols=80 Identities=23% Similarity=0.284 Sum_probs=72.4
Q ss_pred cCCCCChHHHHHHHh-cCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCcccccccc
Q psy14772 21 KTQALPLARIKKIMK-LDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDI 99 (191)
Q Consensus 21 k~~~LPlARIKKIMK-~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~Di 99 (191)
..+.||+|||+|||| .+|++.+||+||+++|++|||+||.+|+.+|+.+|.+.+||||+++||..|+...+.++||.++
T Consensus 6 ~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~~l 85 (128)
T 2byk_B 6 EDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVPSL 85 (128)
T ss_dssp -----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHHHH
T ss_pred ccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHHHHH
Confidence 357899999999999 6899999999999999999999999999999999999999999999999999999999999866
Q ss_pred C
Q psy14772 100 V 100 (191)
Q Consensus 100 V 100 (191)
-
T Consensus 86 k 86 (128)
T 2byk_B 86 T 86 (128)
T ss_dssp H
T ss_pred H
Confidence 3
No 6
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.80 E-value=6.4e-20 Score=136.13 Aligned_cols=80 Identities=25% Similarity=0.328 Sum_probs=73.4
Q ss_pred cCCCCChHHHHHHHhcC-CCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCcccccccc
Q psy14772 21 KTQALPLARIKKIMKLD-DGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDI 99 (191)
Q Consensus 21 k~~~LPlARIKKIMK~D-~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~Di 99 (191)
....||+++|+||||.+ |++.+||+||..++++|+|+||.+|+.+|+.+|.++|||||+++||..|++ .++|+.++
T Consensus 5 ~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~---~l~F~~~i 81 (93)
T 1n1j_A 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS---TLGFDSYV 81 (93)
T ss_dssp --CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH---HTTCGGGH
T ss_pred ccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH---HcCcHhhH
Confidence 45789999999999999 999999999999999999999999999999999999999999999999997 67888777
Q ss_pred CCCc
Q psy14772 100 VPRE 103 (191)
Q Consensus 100 VP~~ 103 (191)
.|..
T Consensus 82 ~~~~ 85 (93)
T 1n1j_A 82 EPLK 85 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 7
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.63 E-value=8.8e-16 Score=107.48 Aligned_cols=65 Identities=28% Similarity=0.386 Sum_probs=62.4
Q ss_pred CCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhc
Q psy14772 24 ALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 89 (191)
Q Consensus 24 ~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~ 89 (191)
.||.++|+||||.+ +..+||+||..++++|+|.|+.+|+.+|+.+|.++|||||+++||..|+..
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 58999999999998 778999999999999999999999999999999999999999999999864
No 8
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.62 E-value=1e-15 Score=110.00 Aligned_cols=67 Identities=21% Similarity=0.315 Sum_probs=61.7
Q ss_pred CCCCChHHHHHHHh-cCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhc
Q psy14772 22 TQALPLARIKKIMK-LDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 89 (191)
Q Consensus 22 ~~~LPlARIKKIMK-~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~ 89 (191)
...||+|+|+|||| ..|+ ..||+||..++.+++|+|+++|+.+|++.|..++||||+++||..|++.
T Consensus 2 ~~~LP~A~V~rI~K~~~p~-~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 2 RRTVPRGTLRKIIKKHKPH-LRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp --CCCHHHHHHHHHHHCTT-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHhCCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 46799999999999 6787 4899999999999999999999999999999999999999999999864
No 9
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.52 E-value=1.3e-14 Score=120.25 Aligned_cols=78 Identities=17% Similarity=0.281 Sum_probs=71.9
Q ss_pred cCCCCChHHHHHHHhcC-CCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCcccccccc
Q psy14772 21 KTQALPLARIKKIMKLD-DGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDI 99 (191)
Q Consensus 21 k~~~LPlARIKKIMK~D-~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~Di 99 (191)
....||+|+|.||||.. | ..+||+||..+|.+|+++||.+|+.+|++.|.+.+||||+++||..|+...+..+|+..+
T Consensus 12 eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv~~l 90 (179)
T 1jfi_B 12 DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEV 90 (179)
T ss_dssp CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGHHHH
T ss_pred hhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHHHHH
Confidence 44679999999999987 6 779999999999999999999999999999999999999999999999988877777644
No 10
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.49 E-value=6.7e-14 Score=110.69 Aligned_cols=77 Identities=19% Similarity=0.340 Sum_probs=74.4
Q ss_pred CCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCccccccc
Q psy14772 22 TQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLID 98 (191)
Q Consensus 22 ~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~D 98 (191)
.+.||++||+|+||.+....+|+.+|+++++.++|+|+.++.+.|++.|.++++++|+++||..||.++++|++|..
T Consensus 23 gLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~nDeEL~~Ll~ 99 (131)
T 1id3_C 23 GLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLG 99 (131)
T ss_dssp TCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCHHHHHHTT
T ss_pred CeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhccHHHHHHhc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999874
No 11
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=99.47 E-value=9.6e-14 Score=108.68 Aligned_cols=77 Identities=19% Similarity=0.331 Sum_probs=74.3
Q ss_pred CCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCccccccc
Q psy14772 22 TQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLID 98 (191)
Q Consensus 22 ~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~D 98 (191)
.+.||++||+|+||.+....+|+.+|+++++.++|+|+.++.+.|++.|.++++++|+++||..||.++++|++|..
T Consensus 21 gL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~Ll~ 97 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 97 (123)
T ss_dssp TCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred CeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhccHHHHHHhc
Confidence 57899999999999998999999999999999999999999999999999999999999999999999999999874
No 12
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=99.46 E-value=1.3e-13 Score=108.78 Aligned_cols=77 Identities=18% Similarity=0.328 Sum_probs=74.4
Q ss_pred CCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCccccccc
Q psy14772 22 TQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLID 98 (191)
Q Consensus 22 ~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~D 98 (191)
.+.||++||.|+||.+....+||.+|+++++.++|+|+.++.+.|++.|.++++++|+++||..||.++++|++|..
T Consensus 23 gLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~L~~ 99 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLG 99 (129)
T ss_dssp TCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred ceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHHHHhC
Confidence 57899999999999998999999999999999999999999999999999999999999999999999999999874
No 13
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=99.45 E-value=1.1e-13 Score=107.86 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=74.3
Q ss_pred CCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCccccccc
Q psy14772 22 TQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLID 98 (191)
Q Consensus 22 ~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~D 98 (191)
.+.||++||.|+||.+....+|+.+|+++++.++|+|+.++.+.|++.|.++++++|+++||..||.++++|++|..
T Consensus 20 gLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~nDeEL~~Ll~ 96 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLK 96 (120)
T ss_dssp TCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred CccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhcCHHHHHHhC
Confidence 47899999999999998899999999999999999999999999999999999999999999999999999999885
No 14
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=99.43 E-value=2.5e-13 Score=107.02 Aligned_cols=78 Identities=21% Similarity=0.226 Sum_probs=73.9
Q ss_pred CCCCChHHHHHHHhcCCCc-cccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCcccccccc
Q psy14772 22 TQALPLARIKKIMKLDDGV-KMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDI 99 (191)
Q Consensus 22 ~~~LPlARIKKIMK~D~DV-~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~Di 99 (191)
.+.||++||.|+||.+.+. .+|+.+|+++++.++|+|..++.+.|++.|.++++++|+++||..||.++++|++|.+.
T Consensus 25 gLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~nDeEL~~Ll~~ 103 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKA 103 (128)
T ss_dssp TCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSHHHHHHCCS
T ss_pred CccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHhhhhcc
Confidence 4789999999999998876 49999999999999999999999999999999999999999999999999999998873
No 15
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=99.42 E-value=3.4e-13 Score=108.94 Aligned_cols=77 Identities=18% Similarity=0.324 Sum_probs=74.3
Q ss_pred CCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCccccccc
Q psy14772 22 TQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLID 98 (191)
Q Consensus 22 ~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~D 98 (191)
.+.||++||.|+||.+....+|+.+|+++++.++|+|+.++.+.|++.|..++|++|+++||..||.++++|++|..
T Consensus 42 gLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~nDeEL~~Ll~ 118 (149)
T 2f8n_K 42 GLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLG 118 (149)
T ss_dssp TCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHTT
T ss_pred CeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhccHHHHHHhc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999998874
No 16
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.32 E-value=5.1e-12 Score=89.03 Aligned_cols=65 Identities=23% Similarity=0.418 Sum_probs=62.1
Q ss_pred CCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHh
Q psy14772 23 QALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAIT 88 (191)
Q Consensus 23 ~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~ 88 (191)
..||.++|+||+|.. ++.++|++|...+..++|.|+..++.+|..+|++.|||||+.+||..|++
T Consensus 5 ~~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 5 GELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CCSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred ccCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 579999999999985 78999999999999999999999999999999999999999999999985
No 17
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.25 E-value=8.2e-12 Score=103.63 Aligned_cols=77 Identities=22% Similarity=0.278 Sum_probs=73.4
Q ss_pred CCCCChHHHHHHHhcCCCc-cccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCccccccc
Q psy14772 22 TQALPLARIKKIMKLDDGV-KMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLID 98 (191)
Q Consensus 22 ~~~LPlARIKKIMK~D~DV-~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~D 98 (191)
.+.||++||+|+||.+.+. .+|+.+|++.++.++|.|+.++.+.|++.|.++||++|+++||..||.++++|++|.+
T Consensus 103 gl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~eL~~L~~ 180 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIR 180 (192)
T ss_dssp SCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSHHHHHHHC
T ss_pred CCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccHHHHHHHh
Confidence 5789999999999998776 5999999999999999999999999999999999999999999999999999998886
No 18
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.24 E-value=2.1e-11 Score=98.78 Aligned_cols=73 Identities=26% Similarity=0.302 Sum_probs=67.4
Q ss_pred ccccccCCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhc
Q psy14772 16 TELDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 89 (191)
Q Consensus 16 ~~~d~k~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~ 89 (191)
++.|.-...||+++|.||||.. ++.+||.+|...++.++|.|+.+++++|.+.|++.|||||+.+||..|+++
T Consensus 74 ~v~d~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 74 GVEDYDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp TSTTCCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cCCccccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 3444566789999999999997 788999999999999999999999999999999999999999999999975
No 19
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.16 E-value=4.7e-11 Score=91.71 Aligned_cols=77 Identities=12% Similarity=0.198 Sum_probs=66.7
Q ss_pred cCCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCccccccc
Q psy14772 21 KTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLID 98 (191)
Q Consensus 21 k~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~fdFL~D 98 (191)
+...||.+-|+||||.. ++.+||.++...+..+++.|++.++.+|..+|++.|||||+.+||..|+++.+.+.|..+
T Consensus 4 ~d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~ 80 (111)
T 3b0c_T 4 REPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMP 80 (111)
T ss_dssp ------CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBC
T ss_pred CCCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCcccccc
Confidence 45679999999999996 788999999999999999999999999999999999999999999999999887766555
No 20
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.13 E-value=1.2e-10 Score=94.28 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=62.6
Q ss_pred CCCChHHHHHHHhcC-CCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhc
Q psy14772 23 QALPLARIKKIMKLD-DGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 89 (191)
Q Consensus 23 ~~LPlARIKKIMK~D-~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~ 89 (191)
..||.+.|.||||.. ++ .+||.||...++.++|.|+.+++++|.+.|++.|||||+.+||..|+..
T Consensus 3 ~~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~ 69 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADV 69 (154)
T ss_dssp -CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred ccCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 579999999999998 76 8999999999999999999999999999999999999999999999955
No 21
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.09 E-value=3.7e-10 Score=85.31 Aligned_cols=67 Identities=22% Similarity=0.286 Sum_probs=63.2
Q ss_pred CCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCC
Q psy14772 24 ALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYD 91 (191)
Q Consensus 24 ~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e 91 (191)
-||.++|+||++.. .+.+||.+|...++.++|.|+++++.+|..+|++.+||||+.+||..|+++..
T Consensus 29 gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g 95 (103)
T 1tzy_D 29 GITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 95 (103)
T ss_dssp GSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcC
Confidence 39999999999985 57899999999999999999999999999999999999999999999998653
No 22
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.08 E-value=3.7e-10 Score=85.38 Aligned_cols=68 Identities=24% Similarity=0.295 Sum_probs=62.6
Q ss_pred CCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCC
Q psy14772 23 QALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYD 91 (191)
Q Consensus 23 ~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e 91 (191)
..||.++|+||++.. .+.+||.+|...++.++|.|+++++.+|..+|++.+||||+.+||..|+++..
T Consensus 28 ~gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 28 QGITKPAIRRLARRG-GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp --CCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 349999999999985 57899999999999999999999999999999999999999999999998653
No 23
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.03 E-value=8.7e-10 Score=80.51 Aligned_cols=68 Identities=24% Similarity=0.292 Sum_probs=64.1
Q ss_pred CCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcC
Q psy14772 22 TQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 22 ~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~ 90 (191)
...||.+.|+||++.. ++.+||.++...+..++|.|++.++.+|..+|++.|||||+.+||..|++..
T Consensus 8 ~~~ip~~~I~Riar~~-Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 8 IQGITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp CCSSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3569999999999985 7899999999999999999999999999999999999999999999999865
No 24
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.99 E-value=1.4e-09 Score=82.44 Aligned_cols=67 Identities=22% Similarity=0.283 Sum_probs=63.4
Q ss_pred CCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcC
Q psy14772 23 QALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 23 ~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~ 90 (191)
..||.+.|+||++.. .+.+||.+|...+..++|.|+++++.+|..+|++.+||||+.+||..|++..
T Consensus 27 ~~ip~~~I~Rlar~~-Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 27 QGITKPAIRRLARRG-GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp GGSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 349999999999995 6899999999999999999999999999999999999999999999999865
No 25
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.69 E-value=8.2e-08 Score=68.60 Aligned_cols=67 Identities=19% Similarity=0.249 Sum_probs=63.0
Q ss_pred cCCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHh
Q psy14772 21 KTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAIT 88 (191)
Q Consensus 21 k~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~ 88 (191)
....||.+-|++|.+. -++..+|.||...++.-+|.-+.+++++|...++++|||||+.+||..|++
T Consensus 3 ~~s~lp~~~v~~iaes-~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 3 YGSSISAESMKVIAES-IGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CSCCCCHHHHHHHHHH-TTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccccCCHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 3468999999999999 668899999999999999999999999999999999999999999999874
No 26
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.26 E-value=2.4e-06 Score=62.04 Aligned_cols=64 Identities=23% Similarity=0.272 Sum_probs=52.8
Q ss_pred CChHH-HHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHh
Q psy14772 25 LPLAR-IKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAIT 88 (191)
Q Consensus 25 LPlAR-IKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~ 88 (191)
+|..| ||.|.+.-..--+++.+|..++..|+|.|+-.|.+.|+.+|.+.||+||..+||..|..
T Consensus 7 ~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 7 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp HHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 45555 34444432334699999999999999999999999999999999999999999998875
No 27
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.13 E-value=2.4e-06 Score=66.18 Aligned_cols=68 Identities=10% Similarity=0.147 Sum_probs=57.7
Q ss_pred HHHHHhcC---CCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCcc-ccccc
Q psy14772 30 IKKIMKLD---DGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMF-DFLID 98 (191)
Q Consensus 30 IKKIMK~D---~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~f-dFL~D 98 (191)
|.||++.. .++ .+|.++..+|+..++.|+..++..+...|++.|||||+.+||..++.+++.+ ++|.+
T Consensus 33 V~rIvke~gaer~~-~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~l~~ 104 (113)
T 4dra_A 33 VGCLCEEVALDKEM-QFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITD 104 (113)
T ss_dssp HHHHHHHHHHHHTC-CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHHHHH
Confidence 56777753 122 4999999999999999999999999999999999999999999999998765 34443
No 28
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=98.12 E-value=5.2e-06 Score=62.90 Aligned_cols=80 Identities=23% Similarity=0.237 Sum_probs=53.4
Q ss_pred hhhhhh--cccccccCCCCChHH-HHHHHhcCC---CccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHH
Q psy14772 9 VNRVIQ--VTELDLKTQALPLAR-IKKIMKLDD---GVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRND 82 (191)
Q Consensus 9 ~~~e~~--~~~~d~k~~~LPlAR-IKKIMK~D~---DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~D 82 (191)
...||+ -...++--..+|..| |+.|...-. +.-+++.+|..++..|+|.|+-.|.+.|+.+|.+.||.||..+|
T Consensus 13 alrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kD 92 (100)
T 2yfv_A 13 ALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKD 92 (100)
T ss_dssp ---------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHH
T ss_pred HHHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHH
Confidence 356777 233444445555555 344443321 24589999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q psy14772 83 IAMAIT 88 (191)
Q Consensus 83 Ia~AV~ 88 (191)
|..|..
T Consensus 93 iqLa~r 98 (100)
T 2yfv_A 93 MQLARR 98 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998853
No 29
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.11 E-value=1.1e-05 Score=57.20 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=57.4
Q ss_pred HHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhc
Q psy14772 28 ARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 89 (191)
Q Consensus 28 ARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~ 89 (191)
..|.+|+|. .++..++.+++..+...++.++.+++++|..+|.+.+|+||+.+||..||+.
T Consensus 5 ~~i~~iLk~-~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKE-LNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHH-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 358899998 7889999999999999999999999999999999999999999999999975
No 30
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.04 E-value=9.6e-06 Score=63.38 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=51.1
Q ss_pred CCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCC
Q psy14772 38 DGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYD 91 (191)
Q Consensus 38 ~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e 91 (191)
.++++||.++...+..++|.|++.++++|..+|++.+||||+.+||..|+++..
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G 113 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 113 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTT
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCC
Confidence 578999999999999999999999999999999999999999999999998643
No 31
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.04 E-value=6.8e-06 Score=65.34 Aligned_cols=80 Identities=23% Similarity=0.248 Sum_probs=60.8
Q ss_pred hhhhhh--cccccccCCCCChHH-HHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHH
Q psy14772 9 VNRVIQ--VTELDLKTQALPLAR-IKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAM 85 (191)
Q Consensus 9 ~~~e~~--~~~~d~k~~~LPlAR-IKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~ 85 (191)
...||+ -...++--..+|..| |+.|...-..--+++.+|..++..|+|.|+-.|.+.|+.+|.+.||.||..+||..
T Consensus 48 alrEIr~yQkst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqL 127 (136)
T 1tzy_C 48 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 127 (136)
T ss_dssp HHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHHHHHhhcchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHH
Confidence 346777 334444445555555 34444322223599999999999999999999999999999999999999999998
Q ss_pred HHh
Q psy14772 86 AIT 88 (191)
Q Consensus 86 AV~ 88 (191)
|..
T Consensus 128 a~r 130 (136)
T 1tzy_C 128 ARR 130 (136)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 32
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.03 E-value=6.1e-06 Score=63.19 Aligned_cols=64 Identities=9% Similarity=0.049 Sum_probs=56.3
Q ss_pred HHHHHhcCCC--ccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCcc
Q psy14772 30 IKKIMKLDDG--VKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMF 93 (191)
Q Consensus 30 IKKIMK~D~D--V~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~f 93 (191)
|.||++.... -..+|.+++..|+..++.|+..++..+..+|++.|||||+.+||..++.+++.+
T Consensus 25 V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l 90 (107)
T 3b0b_B 25 TGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSL 90 (107)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred HHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHH
Confidence 6777775321 137999999999999999999999999999999999999999999999998754
No 33
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=97.90 E-value=3.2e-05 Score=56.72 Aligned_cols=49 Identities=29% Similarity=0.248 Sum_probs=46.0
Q ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHh
Q psy14772 40 VKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAIT 88 (191)
Q Consensus 40 V~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~ 88 (191)
--+++.+|..++..|+|.|+-.|.+.|+.+|.+.||+||..+||..|..
T Consensus 25 ~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 25 DFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 3499999999999999999999999999999999999999999988764
No 34
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=97.87 E-value=4.5e-05 Score=56.71 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=50.6
Q ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCcc
Q psy14772 41 KMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMF 93 (191)
Q Consensus 41 ~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~f 93 (191)
..+|.++...++..++.++..++..+...|++.|||||+.+||..++++++.+
T Consensus 31 ~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L 83 (90)
T 3v9r_A 31 IKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDL 83 (90)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHH
Confidence 46999999999999999999999999999999999999999999999998865
No 35
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=1.7e-05 Score=68.02 Aligned_cols=59 Identities=22% Similarity=0.196 Sum_probs=54.1
Q ss_pred HHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcC
Q psy14772 31 KKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 31 KKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~ 90 (191)
.||.+. .+|.+||.++...+..++|.|++.++.+|..+|++.+||||+..||..|++..
T Consensus 168 ~RlaRr-gGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 168 EEDGDK-GGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp CTTSCC-TTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred HHHhhc-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 366665 67999999999999999999999999999999999999999999999999753
No 36
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=97.79 E-value=3.8e-05 Score=61.40 Aligned_cols=82 Identities=24% Similarity=0.243 Sum_probs=56.4
Q ss_pred hhhhhhhh--cccccccCCCCChHHH-HHHHhc--CCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHH
Q psy14772 7 EHVNRVIQ--VTELDLKTQALPLARI-KKIMKL--DDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRN 81 (191)
Q Consensus 7 p~~~~e~~--~~~~d~k~~~LPlARI-KKIMK~--D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~ 81 (191)
|.+..||+ -...++--..+|..|+ +.|... +...-+++.+|..++..|+|.|+-.|.+.|+.+|.+.||+||..+
T Consensus 45 pg~LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~k 124 (140)
T 3nqu_A 45 QGWLKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPK 124 (140)
T ss_dssp --------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH
T ss_pred CccHHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHH
Confidence 44578888 3455555566777764 444432 112348999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q psy14772 82 DIAMAIT 88 (191)
Q Consensus 82 DIa~AV~ 88 (191)
||..|..
T Consensus 125 DiqLArr 131 (140)
T 3nqu_A 125 DVQLARR 131 (140)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988864
No 37
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=97.77 E-value=3.3e-05 Score=62.74 Aligned_cols=82 Identities=24% Similarity=0.226 Sum_probs=53.4
Q ss_pred hhhhhhhh--cccccccCCCCChHHH-HHHHhcCC--CccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHH
Q psy14772 7 EHVNRVIQ--VTELDLKTQALPLARI-KKIMKLDD--GVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRN 81 (191)
Q Consensus 7 p~~~~e~~--~~~~d~k~~~LPlARI-KKIMK~D~--DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~ 81 (191)
|....||+ -...++--..+|..|+ +.|...-. ..-+++.+|+.+|..|+|.|+-.|.+.|+.+|.+.||+||..+
T Consensus 61 pg~LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~k 140 (156)
T 3r45_A 61 QGWLKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPK 140 (156)
T ss_dssp --------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHH
T ss_pred CchHHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHH
Confidence 44578888 2333333344444443 33332211 1348999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q psy14772 82 DIAMAIT 88 (191)
Q Consensus 82 DIa~AV~ 88 (191)
||..|..
T Consensus 141 DIqLArr 147 (156)
T 3r45_A 141 DVQLARR 147 (156)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988864
No 38
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=97.75 E-value=3.2e-05 Score=61.87 Aligned_cols=72 Identities=10% Similarity=0.102 Sum_probs=59.6
Q ss_pred HHHHHhcC--CCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCCcc-ccccccCC
Q psy14772 30 IKKIMKLD--DGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMF-DFLIDIVP 101 (191)
Q Consensus 30 IKKIMK~D--~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e~f-dFL~DiVP 101 (191)
|-||++.- ..-..+|.++...|+..++.|+..++..+..+|++.|||||+.+||..++.+++.+ .+|.+...
T Consensus 25 VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~~~~ 99 (140)
T 3vh5_A 25 TGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQKSD 99 (140)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHHHHH
Confidence 45666642 11236999999999999999999999999999999999999999999999999865 45555543
No 39
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=97.60 E-value=9.3e-05 Score=73.76 Aligned_cols=90 Identities=10% Similarity=0.102 Sum_probs=74.8
Q ss_pred hhhhhhhh--cccccc-cCCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHH
Q psy14772 7 EHVNRVIQ--VTELDL-KTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDI 83 (191)
Q Consensus 7 p~~~~e~~--~~~~d~-k~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DI 83 (191)
.|.++|++ +....- ..+.||++||.|.+ ..--..+|++.|++.++..+|....++.+.|.+.|+..+++.|++.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~ 162 (1049)
T 3ksy_A 84 KWAIADAQSAIEKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDI 162 (1049)
T ss_dssp HHHHHHHHHHHTTCCCSSSCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHH
T ss_pred HHHHHHHHHhhhcccccCCccccHHHHHHHh-hcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccc
Confidence 35566665 223332 35789999999999 444567999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcccccc
Q psy14772 84 AMAITKYDMFDFLI 97 (191)
Q Consensus 84 a~AV~~~e~fdFL~ 97 (191)
..|+.+++.++-|.
T Consensus 163 ~~ai~~d~eL~~l~ 176 (1049)
T 3ksy_A 163 KVAMCADKVLMDMF 176 (1049)
T ss_dssp HHHHHHCSSHHHHC
T ss_pred cccccCCHHHHHHH
Confidence 99999998875543
No 40
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.20 E-value=0.0015 Score=47.64 Aligned_cols=69 Identities=13% Similarity=0.327 Sum_probs=60.0
Q ss_pred ccCCCCChHHHHHHHhcC--CCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHh
Q psy14772 20 LKTQALPLARIKKIMKLD--DGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAIT 88 (191)
Q Consensus 20 ~k~~~LPlARIKKIMK~D--~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~ 88 (191)
-....||..=|.||++.. .+-.+|++||..++++-+++|+.+-+.+|...|+..+...|..+||..+.-
T Consensus 4 ~~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~p 74 (81)
T 3b0b_C 4 EREGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLP 74 (81)
T ss_dssp ---CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHH
Confidence 346789999999999974 567799999999999999999999999999999888888999999998653
No 41
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=97.14 E-value=0.0026 Score=46.78 Aligned_cols=67 Identities=12% Similarity=0.265 Sum_probs=60.0
Q ss_pred CCCCChHHHHHHHhcC--CCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHh
Q psy14772 22 TQALPLARIKKIMKLD--DGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAIT 88 (191)
Q Consensus 22 ~~~LPlARIKKIMK~D--~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~ 88 (191)
...||..=|.||++.. .+-.+||.||..++++-+++|+.+-+.+|...|+..+...|..+||..+.-
T Consensus 10 ~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~p 78 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLP 78 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 4679999999999975 477899999999999999999999999999999888888999999998763
No 42
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=96.99 E-value=0.0022 Score=50.42 Aligned_cols=59 Identities=20% Similarity=0.216 Sum_probs=53.4
Q ss_pred HHHHHHh-cCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHh
Q psy14772 29 RIKKIMK-LDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAIT 88 (191)
Q Consensus 29 RIKKIMK-~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~ 88 (191)
-|.|++| ..||. .||.+|..+|.--.+.+.+.++.+|...+..+||+||+.+||..||.
T Consensus 41 YIyKVLKQVhpd~-gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 41 YVYKVLKQVHPDT-GISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp HHHHHHHHHCTTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHhCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 4888888 45775 59999999999999999999999999999999999999999999984
No 43
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=96.90 E-value=0.0017 Score=48.03 Aligned_cols=71 Identities=21% Similarity=0.272 Sum_probs=60.9
Q ss_pred ccccCCCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCeeCHHHHHHHHhc
Q psy14772 18 LDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDN-KRRTLQRNDIAMAITK 89 (191)
Q Consensus 18 ~d~k~~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~-kRKTI~~~DIa~AV~~ 89 (191)
+.++...||-+.|||||..--+ ..+|.+...+++-.+-+|+.+|+..|.+...+. .+.-|+++||..|..+
T Consensus 10 e~~Rrs~f~k~~vKrl~~~~~~-~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rr 81 (89)
T 1bh9_B 10 EMYRRSAFPKAAIKRLIQSITG-TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRR 81 (89)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHcC-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Confidence 4567889999999999986433 378899999999999999999999999998754 4679999999999865
No 44
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=96.65 E-value=0.0046 Score=48.42 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=53.4
Q ss_pred HHHHHHHh-cCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHh
Q psy14772 28 ARIKKIMK-LDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAIT 88 (191)
Q Consensus 28 ARIKKIMK-~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~ 88 (191)
.-|.|++| ..||. .||.+|..+|.--.+.+.+.++.+|...+..+||+||+.+||..||.
T Consensus 37 ~YIyKVLKQVhpd~-gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 37 IYIYTVLKQVHPDT-GISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR 97 (123)
T ss_dssp HHHHHHHHHHCTTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHH
Confidence 34788888 45775 58999999999999999999999999999999999999999999985
No 45
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.0049 Score=52.90 Aligned_cols=71 Identities=21% Similarity=0.230 Sum_probs=58.1
Q ss_pred ccccCCCCChHH-HHHHHhcCC---CccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHh
Q psy14772 18 LDLKTQALPLAR-IKKIMKLDD---GVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAIT 88 (191)
Q Consensus 18 ~d~k~~~LPlAR-IKKIMK~D~---DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~ 88 (191)
+.+--..+|.+| |+.|.+.-. +--+..++|..++..|+|.|+-.|-+.++-+|.+.||-||...||..|-.
T Consensus 8 ~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarr 82 (235)
T 2l5a_A 8 KKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARR 82 (235)
T ss_dssp ---CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHT
T ss_pred ccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHH
Confidence 444557899998 566766432 24589999999999999999999999999999999999999999988854
No 46
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=96.41 E-value=0.0063 Score=50.08 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=53.9
Q ss_pred HHHHHHhc-CCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHh
Q psy14772 29 RIKKIMKL-DDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAIT 88 (191)
Q Consensus 29 RIKKIMK~-D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~ 88 (191)
-|.|++|. .||. .||.+|...+.--+..+++.|+.+|...+..++|+|++..||..||.
T Consensus 8 yi~kvLkqv~p~~-~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avr 67 (192)
T 2jss_A 8 YIYKVLKQTHPDT-GISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 67 (192)
T ss_dssp HHHHHHHHHCSSC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHH
T ss_pred HHHHHHcccCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 48888884 4775 59999999999999999999999999999999999999999999986
No 47
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=95.05 E-value=0.12 Score=37.11 Aligned_cols=67 Identities=15% Similarity=0.299 Sum_probs=58.6
Q ss_pred CCCChHHHHHHHhc-CCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcC
Q psy14772 23 QALPLARIKKIMKL-DDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 23 ~~LPlARIKKIMK~-D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~ 90 (191)
..|+-.++..+++. ||. ..+..++-.++..-++.||...+..|...|++.|..+|...||...+++.
T Consensus 4 ~vl~k~~L~~Lv~~idp~-~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~ 71 (76)
T 1h3o_B 4 MVLTKKKLQDLVREVDPN-EQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQ 71 (76)
T ss_dssp CSSCHHHHHHHHHHHCSS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhh
Confidence 45677788888874 564 58899999999999999999999999999999999999999999888764
No 48
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=94.60 E-value=0.15 Score=37.78 Aligned_cols=63 Identities=21% Similarity=0.293 Sum_probs=48.9
Q ss_pred CChHHHHHHHhcC--CCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCC-------CCeeCHHHHHHHH
Q psy14772 25 LPLARIKKIMKLD--DGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNK-------RRTLQRNDIAMAI 87 (191)
Q Consensus 25 LPlARIKKIMK~D--~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~k-------RKTI~~~DIa~AV 87 (191)
+|..-|-||++.. .+-.+||+||.-++++-++.|+.+-..+|+...+..+ ...+.-+|+....
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEkia 73 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERIV 73 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHHHH
Confidence 5777888899865 6677999999999999999999999999987755422 2577788887654
No 49
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=84.51 E-value=1.3 Score=34.27 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=51.4
Q ss_pred CCCChHHH-HHHHhc---CCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhC---CCCeeCHHHHHHHHhcCCcccc
Q psy14772 23 QALPLARI-KKIMKL---DDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDN---KRRTLQRNDIAMAITKYDMFDF 95 (191)
Q Consensus 23 ~~LPlARI-KKIMK~---D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~---kRKTI~~~DIa~AV~~~e~fdF 95 (191)
..+|..|+ +.|.+. +...-+..++|..++..|+|.|+-.|-+.++-+|.+. +-|.|+ .|+...+... -=+|
T Consensus 3 ~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS-~~iy~e~r~v-l~~~ 80 (121)
T 2ly8_A 3 SKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRIS-GLIYEEVRAV-LKSF 80 (121)
T ss_dssp SCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCS-SCHHHHHHHH-HHHH
T ss_pred CccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchh-HHHHHHHHHH-HHHH
Confidence 46888885 456653 1223489999999999999999999999998887654 446665 2333333221 1156
Q ss_pred ccccCC
Q psy14772 96 LIDIVP 101 (191)
Q Consensus 96 L~DiVP 101 (191)
|.+++-
T Consensus 81 l~~i~r 86 (121)
T 2ly8_A 81 LESVIR 86 (121)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 50
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=67.56 E-value=7.9 Score=26.02 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=35.2
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCeeCHHHHHHHHhc
Q psy14772 48 PMLFSKAAELF----IHELTIRAWIHTEDNKRRTLQRNDIAMAITK 89 (191)
Q Consensus 48 ~vliakAtElF----I~~La~~A~~~A~~~kRKTI~~~DIa~AV~~ 89 (191)
...+++.||-| |..|+.+|...|-..++..|+.+|+..|+.+
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 45677777766 7888999998998889999999999999865
No 51
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=65.36 E-value=11 Score=26.90 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14772 28 ARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTE 71 (191)
Q Consensus 28 ARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~ 71 (191)
.||..||+. -++..++.|+..++|-|||.=+..|.+.-...|+
T Consensus 10 kri~~I~~k-~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~ 52 (75)
T 1h3o_A 10 RRILEIGKK-HGITELHPDVVSYVSHATQQRLQNLVEKISETAQ 52 (75)
T ss_dssp HHHHHHHHT-TTCCEECTTHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHh-cCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 688889987 8899999999999999999988888777544443
No 52
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=62.22 E-value=12 Score=25.47 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcC
Q psy14772 59 IHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 59 I~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~ 90 (191)
|..|+.+|...|-..++..|+.+|+..|+.+.
T Consensus 37 i~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 37 IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 34566777777777788899999999999764
No 53
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=59.16 E-value=17 Score=29.06 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=45.2
Q ss_pred CCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHH
Q psy14772 24 ALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDI 83 (191)
Q Consensus 24 ~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DI 83 (191)
.++.++++|+++..-+....-.++- -++.-.+-=+.+|..-|...|+.++|..|.+.|+
T Consensus 2 vm~~~~~e~lFR~aa~LdvdK~d~~-r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 2 LMKVAEFERLFRQAAGLDVDKNDLK-RVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp CSCHHHHHHHHHHHHCCCCCGGGHH-HHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred cCCHHHHHHHHHHHhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 3688999999998766654444444 4555555567788888999999999999999885
No 54
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=57.33 E-value=15 Score=25.66 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=30.1
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHhhCCCCeeCHHHHHHHHhc
Q psy14772 50 LFSKAAELF----IHELTIRAWIHTEDNKRRTLQRNDIAMAITK 89 (191)
Q Consensus 50 liakAtElF----I~~La~~A~~~A~~~kRKTI~~~DIa~AV~~ 89 (191)
.+++.|+-| |..|+.+|...|-...+..|+.+|+..|+.+
T Consensus 37 ~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~ 80 (86)
T 2krk_A 37 KIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 80 (86)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 444555444 5667888888888778899999999999865
No 55
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=53.61 E-value=13 Score=25.09 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcC
Q psy14772 59 IHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 59 I~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~ 90 (191)
|..|+.+|...|-...+..|+.+|+..|+.+.
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~ 71 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTV 71 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 55677888888888888899999999998753
No 56
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=50.93 E-value=15 Score=25.48 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=33.3
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCeeCHHHHHHHHhc
Q psy14772 48 PMLFSKAAELF----IHELTIRAWIHTEDNKRRTLQRNDIAMAITK 89 (191)
Q Consensus 48 ~vliakAtElF----I~~La~~A~~~A~~~kRKTI~~~DIa~AV~~ 89 (191)
...+++.|+-| |..|+.+|...|-+..+..|+.+|+..|+.+
T Consensus 25 l~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~ 70 (88)
T 3vlf_B 25 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 70 (88)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 34566666666 7788888888887778889999999999875
No 57
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=48.90 E-value=50 Score=26.88 Aligned_cols=64 Identities=13% Similarity=0.100 Sum_probs=48.8
Q ss_pred hHHHHHHHhcC----CCccccCccHHHHHHHHHH------HHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcC
Q psy14772 27 LARIKKIMKLD----DGVKMISAEAPMLFSKAAE------LFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 27 lARIKKIMK~D----~DV~~IS~EA~vliakAtE------lFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~ 90 (191)
..-+..|++.- -.-..++.++...+.+.+. ..+..++..|+..|...++..|+.+|+..++...
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 55666666531 1123688899888888887 5777888899999988888899999999998754
No 58
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=46.11 E-value=48 Score=30.43 Aligned_cols=52 Identities=13% Similarity=0.057 Sum_probs=40.3
Q ss_pred CccccCccHHHHHHHHH-------------HHHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcC
Q psy14772 39 GVKMISAEAPMLFSKAA-------------ELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 39 DV~~IS~EA~vliakAt-------------ElFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~ 90 (191)
....++.+|...+.+.. ..-+..|...|...|...++..|+.+||..|+...
T Consensus 311 ~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~~ 375 (604)
T 3k1j_A 311 KIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKMA 375 (604)
T ss_dssp SSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred CcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHhh
Confidence 34467888887766633 45567788888888988899999999999999653
No 59
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=44.41 E-value=70 Score=25.97 Aligned_cols=48 Identities=10% Similarity=-0.128 Sum_probs=36.5
Q ss_pred ccCccHHHHHHHHHH-------HHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhc
Q psy14772 42 MISAEAPMLFSKAAE-------LFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 89 (191)
Q Consensus 42 ~IS~EA~vliakAtE-------lFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~ 89 (191)
.++.++..++...+. --+..+...|...|...++.+|+.+||..++..
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 688888877766543 234567777777887788999999999998754
No 60
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=40.09 E-value=64 Score=26.56 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=47.5
Q ss_pred CChHHHHHHHhcC--CCccccCccHHHHHHHHHH----HHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhc
Q psy14772 25 LPLARIKKIMKLD--DGVKMISAEAPMLFSKAAE----LFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 89 (191)
Q Consensus 25 LPlARIKKIMK~D--~DV~~IS~EA~vliakAtE----lFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~ 89 (191)
++..-++.|++.- ..-..++.++...+++.+. ..+..+...|...|...+++.|+.+||..++..
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 4556666666621 1122588888888888776 356677788888888889999999999999875
No 61
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.38 E-value=26 Score=31.62 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=33.8
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCeeCHHHHHHHHhc
Q psy14772 48 PMLFSKAAELF----IHELTIRAWIHTEDNKRRTLQRNDIAMAITK 89 (191)
Q Consensus 48 ~vliakAtElF----I~~La~~A~~~A~~~kRKTI~~~DIa~AV~~ 89 (191)
...+++.|+-| |..|+.+|...|-+.+|..|+.+|+..|+.+
T Consensus 368 l~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 368 LDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 44566666644 7888999988888889999999999999854
No 62
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=38.27 E-value=21 Score=29.06 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=46.5
Q ss_pred CCCChHHHHHHHhcCCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCHHHH
Q psy14772 23 QALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDI 83 (191)
Q Consensus 23 ~~LPlARIKKIMK~D~DV~~IS~EA~vliakAtElFI~~La~~A~~~A~~~kRKTI~~~DI 83 (191)
..++.++++|+++..-+.... ++-.--++.-.+-=+.+|..-|...|+.++|..|.+.||
T Consensus 25 ~vmg~~kferlFR~aagLDvd-K~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 25 RPKGFDKLDHYFRTELDIDLT-DETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp SCTTHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred hcCChHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 478999999999987666444 444445555556667778888999999999999999885
No 63
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=34.79 E-value=95 Score=25.12 Aligned_cols=68 Identities=12% Similarity=0.030 Sum_probs=48.5
Q ss_pred CCChHHHHHHHhcC----CCccccCccHHHHHHHHHH------HHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCC
Q psy14772 24 ALPLARIKKIMKLD----DGVKMISAEAPMLFSKAAE------LFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYD 91 (191)
Q Consensus 24 ~LPlARIKKIMK~D----~DV~~IS~EA~vliakAtE------lFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e 91 (191)
.|...-+..|++.- -....++.++...+...+. ..+..++..++..+...++..|+.+|+..++....
T Consensus 196 ~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 196 PYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp CCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 34456677776631 1123678888888877776 34566888888888888888999999999987653
No 64
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=31.21 E-value=51 Score=26.16 Aligned_cols=43 Identities=16% Similarity=0.109 Sum_probs=32.4
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcC
Q psy14772 48 PMLFSKAAEL----FIHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 48 ~vliakAtEl----FI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~ 90 (191)
...+++.++- -+..|+..|...|...++..|+.+|+..|+...
T Consensus 212 ~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 212 LEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 4445544433 466788888888888889999999999998754
No 65
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=28.81 E-value=60 Score=25.51 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=31.0
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhc
Q psy14772 48 PMLFSKAAEL----FIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 89 (191)
Q Consensus 48 ~vliakAtEl----FI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~ 89 (191)
..+++..++= =+..++.+|...|...+++.|+.+|+..|+..
T Consensus 206 ~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 206 AAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDK 251 (257)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 3455554443 35667778888888888899999999999865
No 66
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.58 E-value=64 Score=29.02 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=33.0
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhc
Q psy14772 48 PMLFSKAAEL----FIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 89 (191)
Q Consensus 48 ~vliakAtEl----FI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~ 89 (191)
...+++.|+- =|..|+.+|...|-+.+|..|+.+|+..|+.+
T Consensus 343 l~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 343 LRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 4456666553 36788899988888889999999999999864
No 67
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.87 E-value=67 Score=29.35 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=33.0
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCeeCHHHHHHHHhc
Q psy14772 48 PMLFSKAAELF----IHELTIRAWIHTEDNKRRTLQRNDIAMAITK 89 (191)
Q Consensus 48 ~vliakAtElF----I~~La~~A~~~A~~~kRKTI~~~DIa~AV~~ 89 (191)
...+++.|+-| |..|+.+|...|.+.+|..|+.+|+..|+.+
T Consensus 377 l~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 377 LETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 44566665533 6788899988888889999999999999864
No 68
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.83 E-value=77 Score=28.62 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=32.2
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCeeCHHHHHHHHhc
Q psy14772 48 PMLFSKAAELF----IHELTIRAWIHTEDNKRRTLQRNDIAMAITK 89 (191)
Q Consensus 48 ~vliakAtElF----I~~La~~A~~~A~~~kRKTI~~~DIa~AV~~ 89 (191)
...+++.|+-| |..|+.+|...|-..++..|+.+|+..|+.+
T Consensus 376 l~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 376 FEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 34455555432 6778888888888888999999999999864
No 69
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=22.27 E-value=80 Score=24.68 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=29.3
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCeeCHHHHHHHH
Q psy14772 48 PMLFSKAAELF----IHELTIRAWIHTEDNKRRTLQRNDIAMAI 87 (191)
Q Consensus 48 ~vliakAtElF----I~~La~~A~~~A~~~kRKTI~~~DIa~AV 87 (191)
...++..++=| +..++.+|...|...++..|+.+|+..|+
T Consensus 210 ~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 210 LALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 55566665533 45677777777777778899999998875
No 70
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.79 E-value=72 Score=28.76 Aligned_cols=42 Identities=14% Similarity=0.305 Sum_probs=32.5
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcC
Q psy14772 49 MLFSKAAELF----IHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 90 (191)
Q Consensus 49 vliakAtElF----I~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~ 90 (191)
..+++.|+-| |..|+.+|...|.+.+++.|+.+|+..|+.+.
T Consensus 377 ~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 377 QELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 4456665533 67888888888888888999999999998653
No 71
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=21.21 E-value=3.3e+02 Score=22.06 Aligned_cols=65 Identities=14% Similarity=0.085 Sum_probs=44.5
Q ss_pred CChHHHHHHHhc----CCCccccCccHHHHHHHHHH------HHHHHHHHHHHHHHhhCCCCeeCHHHHHHHHhcCC
Q psy14772 25 LPLARIKKIMKL----DDGVKMISAEAPMLFSKAAE------LFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYD 91 (191)
Q Consensus 25 LPlARIKKIMK~----D~DV~~IS~EA~vliakAtE------lFI~~La~~A~~~A~~~kRKTI~~~DIa~AV~~~e 91 (191)
+...-+..|++. .-.-..++.++...+++.+. ..+..+...|+..|. +...|+.+||..++....
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 445666666664 11123678888888887776 235567777877776 667899999999987653
No 72
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.43 E-value=74 Score=29.28 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=33.1
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCeeCHHHHHHHHhc
Q psy14772 48 PMLFSKAAELF----IHELTIRAWIHTEDNKRRTLQRNDIAMAITK 89 (191)
Q Consensus 48 ~vliakAtElF----I~~La~~A~~~A~~~kRKTI~~~DIa~AV~~ 89 (191)
...+++.|+-| |..|+.+|...|.+.+|+.|+.+|+..|+.+
T Consensus 404 l~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 404 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 34566666543 6788889988888888999999999999864
No 73
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=20.07 E-value=92 Score=24.89 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=28.5
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCeeCHHHHHHHH
Q psy14772 48 PMLFSKAAELF----IHELTIRAWIHTEDNKRRTLQRNDIAMAI 87 (191)
Q Consensus 48 ~vliakAtElF----I~~La~~A~~~A~~~kRKTI~~~DIa~AV 87 (191)
...++..++=| +..++.+|...|...++..|+.+|+..|+
T Consensus 234 ~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 234 LALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 44566555433 45667777777777777889999999876
Done!