RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14772
(191 letters)
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma
(Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 104 bits (260), Expect = 2e-30
Identities = 68/78 (87%), Positives = 75/78 (96%)
Query: 25 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 84
LPLARIKKIMKLD+ VKMISAEAP+LF+KAA++FI ELT+RAWIHTEDNKRRTLQRNDIA
Sbjct: 1 LPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIA 60
Query: 85 MAITKYDMFDFLIDIVPR 102
MAITK+D FDFLIDIVPR
Sbjct: 61 MAITKFDQFDFLIDIVPR 78
>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 92.9 bits (231), Expect = 5e-26
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 34 MKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHT-EDNKRRTLQRNDIAMAITKYDM 92
MK +I+ E L +K ELF+ L A+ L+ ++ + K
Sbjct: 1 MKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKN 60
Query: 93 FDFLIDIVPR 102
+FL+ IVP+
Sbjct: 61 LEFLLQIVPQ 70
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta
(Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 85.7 bits (212), Expect = 6e-23
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 25 LPLARIKKIMK-LDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDI 83
LP+A + +IMK I+ +A + FI +T A KR+T+ DI
Sbjct: 3 LPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDI 62
Query: 84 AMAITKYDMFDFLIDIVP 101
A++ ++ +
Sbjct: 63 LFAMSTLGFDSYVEPLKL 80
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 89
Score = 84.9 bits (210), Expect = 1e-22
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 26 PLARIKKIMK-LDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 84
P A I +++K +S EA ++AA +F +T + +T+ DI
Sbjct: 1 PNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDIL 60
Query: 85 MAITKYDMFDFLIDIVPRE 103
+T+ D F+ + + ++
Sbjct: 61 QTLTELD-FESFVPSLTQD 78
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 84.2 bits (208), Expect = 7e-22
Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 7/129 (5%)
Query: 25 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 84
+P A I K++K ++ +A L FIH ++ A ++++T+ +
Sbjct: 5 IPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVI 64
Query: 85 MAITKYDMFDFLIDIVPR-EEVKTATGPHRRDDATKTALN------PDQVQYYFQLAQQH 137
A+ ++ ++ +E KT R+ + L Q Q F A+Q
Sbjct: 65 QALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQ 124
Query: 138 QAALQQNNQ 146
QA L Q
Sbjct: 125 QAELAQQEW 133
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 80.2 bits (198), Expect = 4e-21
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 25 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 84
P ARIKKIM+ D+ + ++A P++ S+A ELF+ L +A T+ +T+ + +
Sbjct: 3 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 62
Query: 85 MAI 87
I
Sbjct: 63 QCI 65
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus
fervidus, histone A [TaxId: 2180]}
Length = 68
Score = 75.2 bits (185), Expect = 3e-19
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 25 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 84
LP+A I +I+K + G + +S +A + +K E E+ A + R+T++ DI
Sbjct: 4 LPIAPIGRIIK-NAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIE 62
Query: 85 MAITKY 90
+A +
Sbjct: 63 LARKMF 68
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 76.7 bits (189), Expect = 8e-19
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 16 TELDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKR 75
D + A +++I+K G++ S++A L++K EL +A + +++ R
Sbjct: 71 GVEDYDGELFGRATVRRILK-RAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGR 129
Query: 76 RTLQRNDIAMAITK 89
+T+Q D+ AIT
Sbjct: 130 KTVQGEDVEKAITY 143
Score = 44.0 bits (104), Expect = 1e-06
Identities = 11/63 (17%), Positives = 23/63 (36%)
Query: 25 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 84
LP A I++I + G + +S +A + A + + ++TL +
Sbjct: 2 LPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLK 61
Query: 85 MAI 87
Sbjct: 62 ALA 64
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus
horikoshii) [TaxId: 53953]}
Length = 66
Score = 73.3 bits (180), Expect = 2e-18
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 25 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 84
LP+A + ++++ G + +S +A + ++ E + E+ +A R+T++ DI
Sbjct: 3 LPIAPVDRLIR-KAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIK 61
Query: 85 MAI 87
+AI
Sbjct: 62 LAI 64
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 44.8 bits (106), Expect = 9e-07
Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 25 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 84
LP+ +I ++K + I + + E ++ A + + + + + DI
Sbjct: 100 LPVEKIHPLLK-EVLGYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIK 158
Query: 85 MAI 87
+A+
Sbjct: 159 VAM 161
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 82
Score = 36.7 bits (85), Expect = 2e-04
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 23 QALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRND 82
Q + I+++ + GVK IS ++F+ + A +TE KR+T+ D
Sbjct: 8 QGITKPAIRRLAR-RGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMD 66
Query: 83 IAMA 86
+ A
Sbjct: 67 VVYA 70
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 30.9 bits (70), Expect = 0.029
Identities = 14/63 (22%), Positives = 25/63 (39%)
Query: 25 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 84
P+ R+ + +K I AP+ + E E+ A DNK+ + I
Sbjct: 12 FPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHIL 71
Query: 85 MAI 87
+A+
Sbjct: 72 LAV 74
>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA)
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 29.9 bits (66), Expect = 0.13
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 3/80 (3%)
Query: 84 AMAITKYDMFDFLIDIVPREEVKTATGPHRRDDATKTALNPDQVQYYFQLAQQHQAALQQ 143
AMA+ D + ++ + RD + ++ + + ++ + Q
Sbjct: 79 AMALGVEDKVTVPLFEGVQKTQTIRSASDIRDVFINAGIKGEEYDAAWN-SFVVKSLVAQ 137
Query: 144 NNQGATTT--SATPTLVVNG 161
+ A P + VNG
Sbjct: 138 QEKAAADVQLRGVPAMFVNG 157
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 106
Score = 27.1 bits (60), Expect = 0.61
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 25 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 84
P+ R+ ++++ + + + A AP+ + E E+ A DNK+ + +
Sbjct: 13 FPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQ 72
Query: 85 MAI 87
+AI
Sbjct: 73 LAI 75
>d2acya_ d.58.10.1 (A:) Acylphosphatase {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 24.8 bits (54), Expect = 3.9
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 4 GEKEHVNRVIQVTELDLKTQALPLARIKKI 33
G V + + L+T+ P + I +
Sbjct: 53 GPASKVRHMQE----WLETKGSPKSHIDRA 78
>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA)
{Escherichia coli [TaxId: 562]}
Length = 195
Score = 25.3 bits (55), Expect = 4.8
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 114 RDDATKTALNPDQVQYYFQLAQQHQAALQQNNQGATT--TSATPTLVVNG 161
RD + ++ + + ++ + Q + A P + VNG
Sbjct: 10 RDVFINAGIKGEEYDAAWN-SFVVKSLVAQQEKAAADVQLRGVPAMFVNG 58
>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA)
{Vibrio cholerae [TaxId: 666]}
Length = 181
Score = 24.2 bits (51), Expect = 9.8
Identities = 10/118 (8%), Positives = 27/118 (22%), Gaps = 16/118 (13%)
Query: 59 IHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDIVPREEVKTATGPHRRDDAT 118
+ + +A+ + + I + + + + D A
Sbjct: 65 MGQAMSKAYATMIALEVEDKMVPVMFNRIHTLRKPPKDEQELRQIFLDEGIDAAKFDAAY 124
Query: 119 KTALNPDQVQYYFQLAQQHQAALQQNNQGATTTSATPTLVVNG----GNSGAQQIQTI 172
V+ + + Q + P +VVN + +
Sbjct: 125 NGFAVDSMVRRFDKQFQDSGL------------TGVPAVVVNNRYLVQGQSVKSLDEY 170
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.130 0.365
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 642,341
Number of extensions: 26920
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 22
Length of query: 191
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,309,196
Effective search space: 145320756
Effective search space used: 145320756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)