BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14775
         (129 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2KS6|A Chain A, Nmr Solution Structure Of Alg13 --- Obtained With
           Iterative Cs-Rosetta From Backbone Nmr Data
          Length = 201

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 68/156 (43%), Gaps = 33/156 (21%)

Query: 6   VFVTVGTT-KFDELIDKIQSKEILKILKSKGCKKLIIQHG---NGDIKPNITESG----- 56
           +FVT G T  F +L+  + S E  + L   G  +LIIQ G   + + +  + E G     
Sbjct: 8   LFVTCGATVPFPKLVSCVLSDEFCQELIQYGFVRLIIQFGRNYSSEFEHLVQERGGQRES 67

Query: 57  -----------------------LTVHSYDYKXXXXXXXXXXX-LVIAHAGAGTSLEVLE 92
                                  L V  +D+             LVI+HAG G+ L+ L 
Sbjct: 68  QKIPIDQFGCGDTARQYVLMNGKLKVIGFDFSTKMQSIIRDYSDLVISHAGTGSILDSLR 127

Query: 93  AGKLLITVVNQSLMDNHQLELAQKFHELGYSLYCVP 128
             K LI  VN SLMDNHQ ++A KF ELGY   C P
Sbjct: 128 LNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSCAP 163


>pdb|2JZC|A Chain A, Nmr Solution Structure Of Alg13: The Sugar Donor Subunit
           Of A Yeast N-Acetylglucosamine Transferase. Northeast
           Structural Genomics Consortium Target Yg1
          Length = 224

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 68/156 (43%), Gaps = 33/156 (21%)

Query: 6   VFVTVGTT-KFDELIDKIQSKEILKILKSKGCKKLIIQHG---NGDIKPNITESG----- 56
           +FVT G T  F +L+  + S E  + L   G  +LIIQ G   + + +  + E G     
Sbjct: 31  LFVTCGATVPFPKLVSCVLSDEFCQELIQYGFVRLIIQFGRNYSSEFEHLVQERGGQRES 90

Query: 57  -----------------------LTVHSYDYKXXXXXXXXXXX-LVIAHAGAGTSLEVLE 92
                                  L V  +D+             LVI+HAG G+ L+ L 
Sbjct: 91  QKIPIDQFGCGDTARQYVLMNGKLKVIGFDFSTKMQSIIRDYSDLVISHAGTGSILDSLR 150

Query: 93  AGKLLITVVNQSLMDNHQLELAQKFHELGYSLYCVP 128
             K LI  VN SLMDNHQ ++A KF ELGY   C P
Sbjct: 151 LNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSCAP 186


>pdb|1TWY|A Chain A, Crystal Structure Of An Abc-Type Phosphate Transport
           Receptor From Vibrio Cholerae
 pdb|1TWY|B Chain B, Crystal Structure Of An Abc-Type Phosphate Transport
           Receptor From Vibrio Cholerae
 pdb|1TWY|C Chain C, Crystal Structure Of An Abc-Type Phosphate Transport
           Receptor From Vibrio Cholerae
 pdb|1TWY|D Chain D, Crystal Structure Of An Abc-Type Phosphate Transport
           Receptor From Vibrio Cholerae
 pdb|1TWY|E Chain E, Crystal Structure Of An Abc-Type Phosphate Transport
           Receptor From Vibrio Cholerae
 pdb|1TWY|F Chain F, Crystal Structure Of An Abc-Type Phosphate Transport
           Receptor From Vibrio Cholerae
 pdb|1TWY|G Chain G, Crystal Structure Of An Abc-Type Phosphate Transport
           Receptor From Vibrio Cholerae
 pdb|1TWY|H Chain H, Crystal Structure Of An Abc-Type Phosphate Transport
           Receptor From Vibrio Cholerae
          Length = 290

 Score = 30.4 bits (67), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 23  QSKEILKILKSKGCKKLIIQHGNGDIKPNITESG 56
           Q+KE +  LKS+  KKLI+++G   I P+  E G
Sbjct: 251 QTKEFIAFLKSESAKKLIVEYGY--IXPSDVEEG 282


>pdb|3SHX|A Chain A, Frog M-Ferritin With Magnesium, L134p Mutant
          Length = 176

 Score = 26.9 bits (58), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 85  GTSLEVLEAGKLLITVVNQSLMDNHQL 111
           G +LE ++A   L   VNQ+L+D H+L
Sbjct: 91  GNTLEAMQAALQLEKTVNQALLDLHKL 117


>pdb|3SH6|A Chain A, Frog M-Ferritin, D122r Mutant, With Magnesium
          Length = 176

 Score = 26.9 bits (58), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 85  GTSLEVLEAGKLLITVVNQSLMDNHQL 111
           G +LE ++A   L   VNQ+L+D H+L
Sbjct: 91  GNTLEAMQAALQLEKTVNQALLDLHKL 117


>pdb|3SE1|A Chain A, Frog M-Ferritin With Magnesium, R72d Mutant
          Length = 176

 Score = 26.9 bits (58), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 85  GTSLEVLEAGKLLITVVNQSLMDNHQL 111
           G +LE ++A   L   VNQ+L+D H+L
Sbjct: 91  GNTLEAMQAALQLEKTVNQALLDLHKL 117


>pdb|1MFR|A Chain A, Crystal Structure Of M Ferritin
 pdb|1MFR|B Chain B, Crystal Structure Of M Ferritin
 pdb|1MFR|C Chain C, Crystal Structure Of M Ferritin
 pdb|1MFR|D Chain D, Crystal Structure Of M Ferritin
 pdb|1MFR|E Chain E, Crystal Structure Of M Ferritin
 pdb|1MFR|F Chain F, Crystal Structure Of M Ferritin
 pdb|1MFR|G Chain G, Crystal Structure Of M Ferritin
 pdb|1MFR|H Chain H, Crystal Structure Of M Ferritin
 pdb|1MFR|I Chain I, Crystal Structure Of M Ferritin
 pdb|1MFR|J Chain J, Crystal Structure Of M Ferritin
 pdb|1MFR|K Chain K, Crystal Structure Of M Ferritin
 pdb|1MFR|L Chain L, Crystal Structure Of M Ferritin
 pdb|1MFR|M Chain M, Crystal Structure Of M Ferritin
 pdb|1MFR|N Chain N, Crystal Structure Of M Ferritin
 pdb|1MFR|O Chain O, Crystal Structure Of M Ferritin
 pdb|1MFR|P Chain P, Crystal Structure Of M Ferritin
 pdb|1MFR|Q Chain Q, Crystal Structure Of M Ferritin
 pdb|1MFR|R Chain R, Crystal Structure Of M Ferritin
 pdb|1MFR|S Chain S, Crystal Structure Of M Ferritin
 pdb|1MFR|T Chain T, Crystal Structure Of M Ferritin
 pdb|1MFR|U Chain U, Crystal Structure Of M Ferritin
 pdb|1MFR|V Chain V, Crystal Structure Of M Ferritin
 pdb|1MFR|W Chain W, Crystal Structure Of M Ferritin
 pdb|1MFR|X Chain X, Crystal Structure Of M Ferritin
 pdb|3KA3|A Chain A, Frog M-Ferritin With Magnesium
 pdb|3KA4|A Chain A, Frog M-Ferritin With Cobalt
 pdb|3RBC|A Chain A, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|B Chain B, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|C Chain C, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|D Chain D, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|E Chain E, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|F Chain F, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|G Chain G, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|H Chain H, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|I Chain I, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|J Chain J, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|K Chain K, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|L Chain L, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|M Chain M, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|N Chain N, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|O Chain O, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|P Chain P, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|Q Chain Q, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|R Chain R, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|S Chain S, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|T Chain T, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|U Chain U, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|V Chain V, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|W Chain W, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|X Chain X, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RE7|A Chain A, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|B Chain B, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|C Chain C, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|D Chain D, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|E Chain E, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|F Chain F, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|G Chain G, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|H Chain H, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|I Chain I, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|J Chain J, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|K Chain K, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|L Chain L, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|M Chain M, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|N Chain N, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|O Chain O, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|P Chain P, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|Q Chain Q, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|R Chain R, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|S Chain S, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|T Chain T, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|U Chain U, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|V Chain V, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|W Chain W, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|X Chain X, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RGD|A Chain A, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|B Chain B, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|C Chain C, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|D Chain D, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|E Chain E, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|F Chain F, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|G Chain G, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|H Chain H, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|I Chain I, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|J Chain J, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|K Chain K, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|L Chain L, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|M Chain M, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|N Chain N, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|O Chain O, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|P Chain P, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|Q Chain Q, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|R Chain R, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|S Chain S, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|T Chain T, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|U Chain U, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|V Chain V, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|W Chain W, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|X Chain X, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|4DAS|A Chain A, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|B Chain B, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|C Chain C, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|D Chain D, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|E Chain E, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|F Chain F, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|G Chain G, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|H Chain H, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|I Chain I, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|J Chain J, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|K Chain K, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|L Chain L, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|M Chain M, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|N Chain N, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|O Chain O, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|P Chain P, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|Q Chain Q, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|R Chain R, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|S Chain S, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|T Chain T, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|U Chain U, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|V Chain V, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|X Chain X, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|W Chain W, Crystal Structure Of Bullfrog M Ferritin
          Length = 176

 Score = 26.6 bits (57), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 85  GTSLEVLEAGKLLITVVNQSLMDNHQL 111
           G +LE ++A   L   VNQ+L+D H+L
Sbjct: 91  GNTLEAMQAALQLEKTVNQALLDLHKL 117


>pdb|3KA8|A Chain A, Frog M-Ferritin, Eqh Mutant, With Cobalt
          Length = 176

 Score = 26.6 bits (57), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 85  GTSLEVLEAGKLLITVVNQSLMDNHQL 111
           G +LE ++A   L   VNQ+L+D H+L
Sbjct: 91  GNTLEAMQAALQLEKTVNQALLDLHKL 117


>pdb|3KA9|A Chain A, Frog M-Ferritin, Eeh Mutant, With Cobalt
          Length = 176

 Score = 26.6 bits (57), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 85  GTSLEVLEAGKLLITVVNQSLMDNHQL 111
           G +LE ++A   L   VNQ+L+D H+L
Sbjct: 91  GNTLEAMQAALQLEKTVNQALLDLHKL 117


>pdb|3KA6|A Chain A, Frog M-Ferritin, Eed Mutant, With Cobalt
          Length = 176

 Score = 26.6 bits (57), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 85  GTSLEVLEAGKLLITVVNQSLMDNHQL 111
           G +LE ++A   L   VNQ+L+D H+L
Sbjct: 91  GNTLEAMQAALQLEKTVNQALLDLHKL 117


>pdb|3CP8|A Chain A, Crystal Structure Of Gida From Chlorobium Tepidum
 pdb|3CP8|B Chain B, Crystal Structure Of Gida From Chlorobium Tepidum
 pdb|3CP8|C Chain C, Crystal Structure Of Gida From Chlorobium Tepidum
 pdb|3CP8|D Chain D, Crystal Structure Of Gida From Chlorobium Tepidum
          Length = 641

 Score = 26.6 bits (57), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 16  DELIDKIQSKEILKILKSKGCKKLIIQHGNGDIK 49
           D+LI K ++KE  ++  S    +LI++H N D++
Sbjct: 431 DDLITK-ETKEPYRMFTSSAEHRLILRHDNADLR 463


>pdb|1Z25|A Chain A, Structure Of P.Furiosus Argonaute With Bound Mn2+
 pdb|1Z26|A Chain A, Structure Of Pyrococcus Furiosus Argonaute With Bound
           Tungstate
          Length = 771

 Score = 26.6 bits (57), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 7   FVTVGTTKFDELIDKIQSKEILKILKSKG 35
           F+  G   F EL +  QSK +L++LK  G
Sbjct: 73  FIPEGEISFSELRNDYQSKLVLRLLKENG 101


>pdb|1U04|A Chain A, Crystal Structure Of Full Length Argonaute From Pyrococcus
           Furiosus
          Length = 771

 Score = 26.6 bits (57), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 7   FVTVGTTKFDELIDKIQSKEILKILKSKG 35
           F+  G   F EL +  QSK +L++LK  G
Sbjct: 73  FIPEGEISFSELRNDYQSKLVLRLLKENG 101


>pdb|1OPG|H Chain H, Opg2 Fab Fragment
 pdb|1BM3|H Chain H, Immunoglobulin Opg2 Fab-Peptide Complex
          Length = 227

 Score = 26.6 bits (57), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 6/94 (6%)

Query: 40  IIQHGNGDIKP------NITESGLTVHSYDYKXXXXXXXXXXXLVIAHAGAGTSLEVLEA 93
           ++Q G G + P      +   SG T  SY               V A +G GT +   ++
Sbjct: 4   LVQSGGGLVNPGRSLKLSCAASGFTFSSYGMSWVRQTPEKRLEWVAAISGGGTYIHYPDS 63

Query: 94  GKLLITVVNQSLMDNHQLELAQKFHELGYSLYCV 127
            K   T+   +  +N  L+++    E     YC 
Sbjct: 64  VKGRFTISRDNAKNNLYLQMSSLRSEDTALYYCT 97


>pdb|3NOZ|X Chain X, Crystal Structure Of Pd(Allyl)APO-E45cR52H-Rhlfr
          Length = 174

 Score = 26.2 bits (56), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 85  GTSLEVLEAGKLLITVVNQSLMDNHQLELAQ 115
           GT+L+ ++A  +L   +NQ+L+D H L  AQ
Sbjct: 90  GTTLDAMKAAIVLEKSLNQALLDLHALGSAQ 120


>pdb|3NP0|X Chain X, Crystal Structure Of Pd(Allyl)APO-E45cH49AR52H-Rhlfr
          Length = 174

 Score = 26.2 bits (56), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 85  GTSLEVLEAGKLLITVVNQSLMDNHQLELAQ 115
           GT+L+ ++A  +L   +NQ+L+D H L  AQ
Sbjct: 90  GTTLDAMKAAIVLEKSLNQALLDLHALGSAQ 120


>pdb|3NP2|X Chain X, Crystal Structure Of Pd(Allyl)APO-E45cC48A-Rhlfr
          Length = 174

 Score = 26.2 bits (56), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 85  GTSLEVLEAGKLLITVVNQSLMDNHQLELAQ 115
           GT+L+ ++A  +L   +NQ+L+D H L  AQ
Sbjct: 90  GTTLDAMKAAIVLEKSLNQALLDLHALGSAQ 120


>pdb|1IES|A Chain A, Tetragonal Crystal Structure Of Native Horse Spleen
           Ferritin
 pdb|1IES|B Chain B, Tetragonal Crystal Structure Of Native Horse Spleen
           Ferritin
 pdb|1IES|C Chain C, Tetragonal Crystal Structure Of Native Horse Spleen
           Ferritin
 pdb|1IES|D Chain D, Tetragonal Crystal Structure Of Native Horse Spleen
           Ferritin
 pdb|1IES|E Chain E, Tetragonal Crystal Structure Of Native Horse Spleen
           Ferritin
 pdb|1IES|F Chain F, Tetragonal Crystal Structure Of Native Horse Spleen
           Ferritin
 pdb|1GWG|A Chain A, Tri-Iodide Derivative Of Apoferritin
 pdb|1XZ1|A Chain A, Complex Of Halothane With Apoferritin
 pdb|1XZ3|A Chain A, Complex Of Apoferritin With Isoflurane
 pdb|1HRS|A Chain A, A Crystallographic Study Of Haem Binding To Ferritin
 pdb|1IER|A Chain A, Cubic Crystal Structure Of Native Horse Spleen Ferritin
 pdb|2Z5Q|A Chain A, Apo-Fr With Intermediate Content Of Pd Ion
 pdb|2Z5R|A Chain A, Apo-Fr With High Content Of Pd Ions
 pdb|2W0O|A Chain A, Horse Spleen Apoferritin
 pdb|2ZG7|X Chain X, Crystal Structure Of Pd(Allyl)APO-Fr
 pdb|3F32|A Chain A, Horse Spleen Apoferritin
 pdb|3F33|A Chain A, Apoferritin: Complex With Propofol
 pdb|3F34|A Chain A, Apoferritin: Complex With 2,6-Diethylphenol
 pdb|3F35|A Chain A, Apoferritin: Complex With 2,6-Diethylphenol
 pdb|3F36|A Chain A, Apoferritin: Complex With 2-Isopropylphenol
 pdb|3F37|A Chain A, Apoferritin: Complex With 2,6-Dimethylphenol
 pdb|3F38|A Chain A, Apoferritin: Complex With 2,6-Dimethylphenol
 pdb|3F39|A Chain A, Apoferritin: Complex With Phenol
 pdb|3AF7|X Chain X, Crystal Structure Of 25pd(Allyl)APO-Fr
 pdb|3O7S|A Chain A, Crystal Structure Of Ru(P-Cymene)APO-Fr
 pdb|3RAV|A Chain A, Horse Spleen Apo-Ferritin With Bound Pentobarbital
 pdb|3RD0|A Chain A, Horse Spleen Apo-Ferritin With Bound Thiopental
 pdb|4DE6|A Chain A, Horse Spleen Apo-Ferritin Complex With Arachidonic Acid
 pdb|3U90|A Chain A, Apoferritin: Complex With Sds
          Length = 174

 Score = 26.2 bits (56), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 85  GTSLEVLEAGKLLITVVNQSLMDNHQLELAQ 115
           GT+L+ ++A  +L   +NQ+L+D H L  AQ
Sbjct: 90  GTTLDAMKAAIVLEKSLNQALLDLHALGSAQ 120


>pdb|3AF9|X Chain X, Crystal Structure Of Pd(Allyl)APO-C48afr
          Length = 174

 Score = 26.2 bits (56), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 85  GTSLEVLEAGKLLITVVNQSLMDNHQLELAQ 115
           GT+L+ ++A  +L   +NQ+L+D H L  AQ
Sbjct: 90  GTTLDAMKAAIVLEKSLNQALLDLHALGSAQ 120


>pdb|3AF8|X Chain X, Crystal Structure Of Pd(Ally)APO-C126afr
          Length = 174

 Score = 26.2 bits (56), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 85  GTSLEVLEAGKLLITVVNQSLMDNHQLELAQ 115
           GT+L+ ++A  +L   +NQ+L+D H L  AQ
Sbjct: 90  GTTLDAMKAAIVLEKSLNQALLDLHALGSAQ 120


>pdb|2GYD|A Chain A, Complex Of Equine Apoferritin With The H-Diaziflurane
           Photolabeling Reagent
          Length = 170

 Score = 25.8 bits (55), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 85  GTSLEVLEAGKLLITVVNQSLMDNHQLELAQ 115
           GT+L+ ++A  +L   +NQ+L+D H L  AQ
Sbjct: 89  GTTLDAMKAAIVLEKSLNQALLDLHALGSAQ 119


>pdb|2ZUR|X Chain X, Crystal Structure Of Rh(Nbd)APO-Fr
          Length = 174

 Score = 25.8 bits (55), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 85  GTSLEVLEAGKLLITVVNQSLMDNHQLELAQ 115
           GT+L+ ++A  +L   +NQ+L+D H L  AQ
Sbjct: 90  GTTLDAMKAAIVLEKSLNQALLDLHALGSAQ 120


>pdb|1BG7|A Chain A, Localized Unfolding At The Junction Of Three Ferritin
           Subunits. A Mechanism For Iron Release?
          Length = 176

 Score = 25.4 bits (54), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 85  GTSLEVLEAGKLLITVVNQSLMDNHQL 111
           G +LE ++A   L   VNQ+L+D H++
Sbjct: 91  GNTLEAMQAALQLEKTVNQALLDLHKV 117


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,233,637
Number of Sequences: 62578
Number of extensions: 105306
Number of successful extensions: 360
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 28
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)