RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14775
(129 letters)
>gnl|CDD|227350 COG5017, COG5017, Uncharacterized conserved protein [Function
unknown].
Length = 161
Score = 97.6 bits (243), Expect = 6e-27
Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 13/129 (10%)
Query: 6 VFVTVGTT--KFDELIDKIQSKEILKILKSKGCKKLIIQHGNGDIKPNITESGLTVHSYD 63
+FVTVG+T F+ L+ KI+ E+ + ++LI+Q+GNGDIKP +GL V+ +D
Sbjct: 2 IFVTVGSTFYPFNRLVLKIEVLELTE----LIQEELIVQYGNGDIKP---VAGLRVYGFD 54
Query: 64 YKSSISEDIESSDLVIAHAGAGTSLEVLEAGKLLITVVN----QSLMDNHQLELAQKFHE 119
+ I I + +VI+HAG G+ L +L K LI V Q L+D+HQ+ELA K E
Sbjct: 55 KEEKIQSLIHDARIVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE 114
Query: 120 LGYSLYCVP 128
+ Y + C P
Sbjct: 115 INYVVACSP 123
>gnl|CDD|217893 pfam04101, Glyco_tran_28_C, Glycosyltransferase family 28
C-terminal domain. The glycosyltransferase family 28
includes monogalactosyldiacylglycerol synthase (EC
2.4.1.46) and UDP-N-acetylglucosamine transferase (EC
2.4.1.-). Structural analysis suggests the C-terminal
domain contains the UDP-GlcNAc binding site.
Length = 167
Score = 93.2 bits (232), Expect = 3e-25
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 6 VFVTVGTTKFDELIDKIQSKEILKILKSKG-CKKLIIQHGNGD---IKPNITESGLTVHS 61
+FVT G+ L + E+ +L+ KG +++ Q G D + ++ G+ V
Sbjct: 2 IFVTGGSQGAQALNRLV--LEVDPLLELKGIEYQVLHQTGKSDYEPVNCKYSKFGINVEV 59
Query: 62 YDYKSSISEDIESSDLVIAHAGAGTSLEVLEAGKLLITVVNQS----LMDNHQLELAQKF 117
+ + +++E I+++DLVI+ AGAGT E+L GK I V DN+ LEL +
Sbjct: 60 FPFIDNMAEYIKAADLVISRAGAGTIAELLALGKPAILVPRPKAAGEHQDNNALELVKAG 119
Query: 118 HELGYSLYC 126
L
Sbjct: 120 AALVLLQKE 128
>gnl|CDD|223779 COG0707, MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine
transferase [Cell envelope biogenesis, outer membrane].
Length = 357
Score = 46.5 bits (111), Expect = 6e-07
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 38 KLIIQHGNGDIK--PNITESGLTVHSYDYKSSISEDIESSDLVIAHAGAGTSLEVLEAGK 95
++I Q G D++ + V + ++ + ++DLVI+ AGA T E+L G
Sbjct: 214 QVIHQTGKNDLEELKSAYNELGVVRVLPFIDDMAALLAAADLVISRAGALTIAELLALGV 273
Query: 96 LLITVVNQSLMDNHQLELAQKFHELGYSL 124
I V D HQ A+ + G +L
Sbjct: 274 PAILVPYPPGADGHQEYNAKFLEKAGAAL 302
>gnl|CDD|222200 pfam13528, Glyco_trans_1_3, Glycosyl transferase family 1.
Length = 317
Score = 34.5 bits (80), Expect = 0.009
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 6/97 (6%)
Query: 26 EILKILKSKGCKKLIIQHGNGDIKPNITESGLTVHSYDYKSSISEDIESSDLVIAHAGAG 85
++ ++LK + I+ +G + E LT + + + D+ VI +AG
Sbjct: 205 DVAELLKPFPDYEFIV-YGPNKEEG--REGNLTFRPFSEEGFL-RDLAECSAVICNAGFE 260
Query: 86 TSLEVLEAGKLLITVVNQSLMDNHQLELAQKFHELGY 122
E L GK L+ V + Q A LGY
Sbjct: 261 LLSEALYLGKPLLLVPLDGQFE--QTSNALYLERLGY 295
>gnl|CDD|224732 COG1819, COG1819, Glycosyl transferases, related to
UDP-glucuronosyltransferase [Carbohydrate transport and
metabolism / Signal transduction mechanisms].
Length = 406
Score = 34.3 bits (79), Expect = 0.010
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 70 EDIESSDLVIAHAGAGTSLEVLEAGKLLI 98
E + +D VI H GAGT+ E L AG L+
Sbjct: 296 ELLPRADAVIHHGGAGTTSEALYAGVPLV 324
>gnl|CDD|99961 cd03785, GT1_MurG, MurG is an N-acetylglucosaminyltransferase, the
last enzyme involved in the intracellular phase of
peptidoglycan biosynthesis. It transfers
N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the
C4 hydroxyl of a lipid-linked N-acetylmuramoyl
pentapeptide (NAM). The resulting disaccharide is then
transported across the cell membrane, where it is
polymerized into NAG-NAM cell-wall repeat structure.
MurG belongs to the GT-B structural superfamily of
glycoslytransferases, which have characteristic N- and
C-terminal domains, each containing a typical Rossmann
fold. The two domains have high structural homology
despite minimal sequence homology. The large cleft that
separates the two domains includes the catalytic center
and permits a high degree of flexibility.
Length = 350
Score = 33.2 bits (77), Expect = 0.021
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 14/107 (13%)
Query: 26 EILKILKSKGCKKLIIQHGNGD---IKPNITESGLTVHSYDYKSSISEDIESSDLVIAHA 82
E L L K + +I Q G GD +K E G+ + + ++ ++DLVI+ A
Sbjct: 202 EALAELLRKRLQ-VIHQTGKGDLEEVKKAYEELGVNYEVFPFIDDMAAAYAAADLVISRA 260
Query: 83 GAGTSLEVLEAGK--LLI---TVVNQSLMDNHQLELAQKFHELGYSL 124
GA T E+ G +LI D+HQ A+ + G ++
Sbjct: 261 GASTVAELAALGLPAILIPLPYAA-----DDHQTANARALVKAGAAV 302
>gnl|CDD|99960 cd03784, GT1_Gtf_like, This family includes the Gtfs, a group of
homologous glycosyltransferases involved in the final
stages of the biosynthesis of antibiotics vancomycin and
related chloroeremomycin. Gtfs transfer sugar moieties
from an activated NDP-sugar donor to the oxidatively
cross-linked heptapeptide core of vancomycin group
antibiotics. The core structure is important for the
bioactivity of the antibiotics.
Length = 401
Score = 31.2 bits (71), Expect = 0.12
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 76 DLVIAHAGAGTSLEVLEAGKLLITV 100
V+ H GAGT+ L AG + V
Sbjct: 306 AAVVHHGGAGTTAAALRAGVPQLVV 330
>gnl|CDD|169387 PRK08335, PRK08335, translation initiation factor IF-2B subunit
alpha; Validated.
Length = 275
Score = 30.9 bits (70), Expect = 0.15
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 69 SEDIESSDLVIAHAGAGTSLEVL----EAGKLLITVVNQSLMDNHQLELAQKFHELGYSL 124
SE I+ D++I H+ + LE+L GK ++ +S D L LA + LG
Sbjct: 104 SELIDDGDVIITHSFSSAVLEILKTAKRKGKRFKVILTESAPDYEGLALANELEFLGIEF 163
Query: 125 YCVPD 129
+ D
Sbjct: 164 EVITD 168
>gnl|CDD|233284 TIGR01133, murG, undecaprenyldiphospho-muramoylpentapeptide
beta-N-acetylglucosaminyltransferase. RM 8449890 RT The
final step of peptidoglycan subunit assembly in
Escherichia coli occurs in the cytoplasm. RA Bupp K, van
Heijenoort J. RL J Bacteriol 1993 Mar;175(6):1841-3
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 348
Score = 30.3 bits (69), Expect = 0.20
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 26 EILKILKSKGCKKLIIQHGNGDIKPNITESGLTVHSYDYKSSISEDIES----SDLVIAH 81
+ L L KG +++ Q G D++ + + + I E++ + +DLVI+
Sbjct: 200 KALAKLAEKG-IQIVHQTGKNDLE-KVKNVYQELGIEAIVTFIDENMAAAYAAADLVISR 257
Query: 82 AGAGTSLEVLEAGKLLITVVNQSLMDNHQLELAQKFHELGYSLY 125
AGA T E+ AG I + + Q A+ +LG L
Sbjct: 258 AGASTVAELAAAGVPAILIPYPY-AADDQYYNAKFLEDLGAGLV 300
>gnl|CDD|238712 cd01424, MGS_CPS_II, Methylglyoxal synthase-like domain from type
II glutamine-dependent carbamoyl phosphate synthetase
(CSP). CSP, a CarA and CarB heterodimer, catalyzes the
production of carbamoyl phosphate which is subsequently
employed in the metabolic pathways responsible for the
synthesis of pyrimidine nucleotides or arginine. The
MGS-like domain is the C-terminal domain of CarB and
appears to play a regulatory role in CPS function by
binding allosteric effector molecules, including UMP and
ornithine.
Length = 110
Score = 29.4 bits (67), Expect = 0.21
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 94 GKLLITVVNQSLMD-NHQLELAQKFHELGYSLY 125
G + I+V ++ D +E+A++ ELG+ L
Sbjct: 1 GTVFISVADR---DKPEAVEIAKRLAELGFKLV 30
>gnl|CDD|233077 TIGR00661, MJ1255, conserved hypothetical protein. This model
represents nearly the full length of MJ1255 from
Methanococcus jannaschii and of an unpublished protein
from Vibrio cholerae, as well as the C-terminal half of
a protein from Methanobacterium thermoautotrophicum. A
small region (~50 amino acids) within the domain appears
related to a family of sugar transferases [Hypothetical
proteins, Conserved].
Length = 321
Score = 29.8 bits (67), Expect = 0.32
Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 21/105 (20%)
Query: 26 EILKILKSKGCKKLIIQHGNGDIKPNITESGLT-------VHSYDYKSSISEDIESSDLV 78
+IL++L K + + ++ + + ++K E I++++LV
Sbjct: 202 KILELLGKIANVKFVCYS------YEVAKNSYNENVEIRRITTDNFK----ELIKNAELV 251
Query: 79 IAHAGAGTSLEVLEAGKLLITVVNQSLMDN-HQLELAQKFHELGY 122
I H G E L GK LI + + Q A K +LG
Sbjct: 252 ITHGGFSLISEALSLGKPLIVI---PDLGQFEQGNNAVKLEDLGC 293
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 30.0 bits (68), Expect = 0.32
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 5 QVFVTVGTTKFDELIDKIQSKEILKILKSKGCKKLII 41
QV+ GT KF+ L+ +I I+ + + +K++I
Sbjct: 750 QVYTEEGTKKFNILLQEIAYDVIVSLFNNPNAEKILI 786
>gnl|CDD|234825 PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N-
acetylglucosaminyltransferase; Provisional.
Length = 357
Score = 29.7 bits (68), Expect = 0.39
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 21/114 (18%)
Query: 26 EILKILKSKGCKKLIIQHGNGDIKP--NITESGLTVHSYDYKSSISEDIES----SDLVI 79
E L +L ++I Q G GD++ +G+ + +D+ + +DLVI
Sbjct: 204 EALALLPEAL--QVIHQTGKGDLEEVRAAYAAGINAEVVPF----IDDMAAAYAAADLVI 257
Query: 80 AHAGAGTSLEVLEAGKLLITV----VNQSLMDNHQLELAQKFHELGYSLYCVPD 129
AGA T E+ AG I V D+HQ A+ + G +L +P
Sbjct: 258 CRAGASTVAELAAAGLPAILVPLPHAA----DDHQTANARALVDAGAAL-LIPQ 306
>gnl|CDD|235922 PRK07058, PRK07058, acetate kinase; Provisional.
Length = 396
Score = 29.6 bits (67), Expect = 0.40
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 60 HSYDYKSSISE------DIESSDLVIAHAGAGTSLEVLEAGK 95
H YK E ++ +V AH G+G SL L+AGK
Sbjct: 180 HGLSYKFVAGELRRRAPELARGKVVAAHLGSGASLCALDAGK 221
>gnl|CDD|233407 TIGR01426, MGT, glycosyltransferase, MGT family. This model
describes the MGT (macroside glycosyltransferase)
subfamily of the UDP-glucuronosyltransferase family.
Members include a number of glucosyl transferases for
macrolide antibiotic inactivation, but also include
transferases of glucose-related sugars for macrolide
antibiotic production [Cellular processes, Toxin
production and resistance].
Length = 392
Score = 29.6 bits (67), Expect = 0.40
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 46 GDIKPNITESGLTVHSYDYKSSISEDIESSDLVIAHAGAGTSLEVLEAGKLLITVVNQSL 105
G++ PN+ V + + I ++ +D I H G +++E L G ++ V Q
Sbjct: 271 GELPPNVE-----VRQWVPQLEI---LKKADAFITHGGMNSTMEALFNGVPMV-AVPQG- 320
Query: 106 MDNHQLELAQKFHELGYSLYCVPD 129
Q A++ ELG + P+
Sbjct: 321 --ADQPMTARRIAELGLGRHLPPE 342
>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed.
Length = 435
Score = 28.9 bits (66), Expect = 0.65
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 13/61 (21%)
Query: 69 SEDIESSDLVIAHAGAGTSLEVLEAGKLLITVVNQS-LMDNHQLE-----LAQKFHELGY 122
+E I DL IA LEAG+ L+ VVN+ L+D +E L ++ L Y
Sbjct: 266 TEGITEQDLRIAGL-------ALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDY 318
Query: 123 S 123
+
Sbjct: 319 A 319
>gnl|CDD|235393 PRK05294, carB, carbamoyl phosphate synthase large subunit;
Reviewed.
Length = 1066
Score = 28.9 bits (66), Expect = 0.74
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 80 AHAGAGTSLEVLEAGKLLITVVNQSLMDNHQLELAQKFHELGYSLY 125
A AG L +G + ++V ++ +ELA++ ELG+ +
Sbjct: 926 AQLAAGNRLP--TSGTVFLSVRDRD--KEEVVELAKRLLELGFKIL 967
>gnl|CDD|179455 PRK02645, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 305
Score = 28.7 bits (65), Expect = 0.75
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 19/89 (21%)
Query: 1 MALSQVFVTVGTTKFDELIDKIQSKEILKILKSKGCKKLIIQHGNGDIKPNITESGLTVH 60
M L QV + K K ++ K L+++GCK L+ SG +
Sbjct: 1 MQLKQVIIAY---KAGSSQAKEAAERCAKQLEARGCKVLMG------------PSGPKDN 45
Query: 61 SYD-YKSSISEDIESSDLVIAHAGAGTSL 88
Y + +S SE I DL I G GT L
Sbjct: 46 PYPVFLASASELI---DLAIVLGGDGTVL 71
>gnl|CDD|153098 cd00904, Ferritin, Ferritin iron storage proteins. Ferritins are
the primary iron storage proteins of most living
organisms and members of a broad superfamily of
ferritin-like diiron-carboxylate proteins. The iron-free
(apoferritin) ferritin molecule is a protein shell
composed of 24 protein chains arranged in 432 symmetry.
Iron storage involves the uptake of iron (II) at the
protein shell, its oxidation by molecular oxygen at the
dinuclear ferroxidase centers, and the movement of iron
(III) into the cavity for deposition as ferrihydrite;
the protein shell can hold up to 4500 iron atoms. In
vertebrates, two types of chains (subunits) have been
characterized, H or M (fast) and L (slow), which differ
in rates of iron uptake and mineralization. Bacterial
non-heme ferritins are composed only of H chains. Fe(II)
oxidation in the H/M subunits take place initially at
the ferroxidase center, a carboxylate-bridged diiron
center, located within the subunit four-helix bundle. In
a complementary role, negatively charged residues on the
protein shell inner surface of the L subunits promote
ferrihydrite nucleation. Most plant ferritins combine
both oxidase and nucleation functions in one chain: they
have four interior glutamate residues as well as seven
ferroxidase center residues.
Length = 160
Score = 28.4 bits (63), Expect = 0.80
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 85 GTSLEVLEAGKLLITVVNQSLMDNHQLELAQKFHEL 120
G +L+ +EA L VNQ+L+D H+L +K L
Sbjct: 82 GGTLDAMEAALKLEKFVNQALLDLHELASEEKDPHL 117
>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA. EngA
(YfgK, Der) is a ribosome-associated essential GTPase
with a duplication of its GTP-binding domain. It is
broadly to universally distributed among bacteria. It
appears to function in ribosome biogenesis or stability
[Protein synthesis, Other].
Length = 429
Score = 27.8 bits (63), Expect = 1.6
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 14/62 (22%)
Query: 69 SEDIESSDLVIAHAGAGTSLEVLEAGKLLITVVN-------QSLMDNHQLELAQKFHELG 121
+E I DL IA LEAGK L+ VVN + + + EL +K L
Sbjct: 265 TEGITEQDLRIAG-------LALEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLD 317
Query: 122 YS 123
++
Sbjct: 318 FA 319
>gnl|CDD|214855 smart00851, MGS, MGS-like domain. This domain composes the whole
protein of methylglyoxal synthetase and the domain is
also found in Carbamoyl phosphate synthetase (CPS) where
it forms a regulatory domain that binds to the
allosteric effector ornithine. This family also includes
inosicase. The known structures in this family show a
common phosphate binding site.
Length = 91
Score = 26.7 bits (60), Expect = 1.8
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 111 LELAQKFHELGYSLYC 126
+E A++ ELG+ L
Sbjct: 3 VEFAKRLAELGFELLA 18
>gnl|CDD|182985 PRK11130, moaD, molybdopterin synthase small subunit; Provisional.
Length = 81
Score = 26.1 bits (58), Expect = 2.3
Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 91 LEAGKLLITVVNQSLM 106
LE GKLL VNQ+L+
Sbjct: 46 LEDGKLL-AAVNQTLV 60
>gnl|CDD|162981 TIGR02707, butyr_kinase, butyrate kinase. This model represents an
enzyme family in which members are designated either
butryate kinase or branched-chain carboxylic acid
kinase. The EC designation 2.7.2.7 describes an enzyme
with relatively broad specificity; gene products whose
context suggests a role in metabolism of aliphatic amino
acids are likely to act as branched-chain carboxylic
acid kinase. The gene typically found adjacent, ptb
(phosphate butyryltransferase), likewise encodes an
enzyme that may have a broad specificity that includes a
role in aliphatic amino acid cabolism [Energy
metabolism, Fermentation].
Length = 351
Score = 27.4 bits (61), Expect = 2.6
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 64 YKSSISEDIESSDLVIAHAGAGTSLEVLEAGKLLITVVN 102
+ + E +L++AH G G S+ G+ +I V N
Sbjct: 163 IAKELGKRYEEMNLIVAHMGGGISVAAHRKGR-VIDVNN 200
>gnl|CDD|132511 TIGR03471, HpnJ, hopanoid biosynthesis associated radical SAM
protein HpnJ. The sequences represented by this model
are members of the radical SAM superfamily of enzymes
(pfam04055). These enzymes utilize an iron-sulfur redox
cluster and S-adenosylmethionine to carry out diverse
radical mediated reactions. The member of this clade
from Acidithiobacillus ferrooxidans ATCC 23270
(AFE_0975) is found in the same locus as squalene-hopene
cyclase (SHC, TIGR01507) and other genes associated with
the biosynthesis of hopanoid natural products.
Similarly, in Ralstonia eutropha JMP134 (Reut_B4901)
this gene is adjacent to HpnAB, IspH and HpnH
(TIGR03470), although SHC itself is elsewhere in the
genome. Notably, this gene (here named HpnJ) and three
others form a conserved set (HpnIJKL) which occur in a
subset of all genomes containing the SHC enzyme. This
relationship was discerned using the method of partial
phylogenetic profiling. This group includes Zymomonas
mobilis, the organism where the initial hopanoid
biosynthesis locus was described consisting of the genes
HpnA-E and SHC (HpnF). Continuing past SHC are found a
phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and
another radical SAM enzyme (ZMO0874), HpnH. Although
discontinuous in Z. mobilis, we continue the gene symbol
sequence with HpnIJKL. One of the well-described
hopanoid intermediates is bacteriohopanetetrol. In the
conversion from hopene several reactions must occur in
the side chain for which a radical mechanism might be
reasonable. These include the four (presumably
anaerobic) hydroxylations and a methyl shift.
Length = 472
Score = 27.4 bits (61), Expect = 2.6
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 26 EILKILKSKGCKKLII--QHGNGDIKPNITESGLTV 59
E LK++K G + L++ + G+ I NI + GLTV
Sbjct: 288 ETLKVMKENGLRLLLVGYESGDQQILKNI-KKGLTV 322
>gnl|CDD|235099 PRK03011, PRK03011, butyrate kinase; Provisional.
Length = 358
Score = 27.0 bits (61), Expect = 2.8
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 71 DIESSDLVIAHAGAGTSLEVLEAGKLLITVVN 102
E +L++AH G G S+ G+ +I V N
Sbjct: 172 KYEELNLIVAHLGGGISVGAHRKGR-VIDVNN 202
>gnl|CDD|227017 COG4671, COG4671, Predicted glycosyl transferase [General function
prediction only].
Length = 400
Score = 27.0 bits (60), Expect = 3.0
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 59 VHSYDYKSSISEDIESSDLVIAHAGAGTSLEVLEAGK--LLITVVNQSLMDNHQLELAQK 116
+ +++++ + + LV++ G T E+L GK L++ QL AQ+
Sbjct: 279 ISIFEFRNDFESLLAGARLVVSMGGYNTVCEILSFGKPALIVPRAAPR---EEQLIRAQR 335
Query: 117 FHELG 121
ELG
Sbjct: 336 LEELG 340
>gnl|CDD|216899 pfam02142, MGS, MGS-like domain. This domain composes the whole
protein of methylglyoxal synthetase and the domain is
also found in Carbamoyl phosphate synthetase (CPS) where
it forms a regulatory domain that binds to the
allosteric effector ornithine. This family also includes
inosicase. The known structures in this family show a
common phosphate binding site.
Length = 92
Score = 25.9 bits (58), Expect = 3.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 111 LELAQKFHELGYSLY 125
+ELA+ ELG+ LY
Sbjct: 3 VELAKALVELGFKLY 17
>gnl|CDD|226466 COG3957, COG3957, Phosphoketolase [Carbohydrate transport and
metabolism].
Length = 793
Score = 26.6 bits (59), Expect = 4.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 68 ISEDIESSDLVIAHAGAGTSLEVLEAGKLL 97
S D D+V+A AG ++EVL A ++L
Sbjct: 617 ASGDDGEPDVVMACAGDVPTIEVLAAAQIL 646
>gnl|CDD|183673 PRK12676, PRK12676, bifunctional inositol-1
monophosphatase/fructose-1,6-bisphosphatase; Reviewed.
Length = 263
Score = 26.4 bits (59), Expect = 4.4
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 17 ELIDKIQSKEILKILKSKGCKKLIIQHGNGDIKPNITESGLTVH 60
+LIDK+ IL++LK G II G+I N TV
Sbjct: 44 KLIDKVAEDIILEVLKPLGRCVNIISEELGEIVGN--GPEYTVV 85
>gnl|CDD|200301 TIGR03621, F420_MSMEG_2516, probable F420-dependent oxidoreductase,
MSMEG_2516 family. Coenzyme F420 is produced by
methanogenic archaea, a number of the Actinomycetes
(including Mycobacterium tuberculosis), and rare members
of other lineages. The resulting information-rich
phylogenetic profile identifies candidate F420-dependent
oxidoreductases within the family of luciferase-like
enzymes (pfam00296), where the species range for the
subfamily encompasses many F420-positive genomes without
straying beyond. This family is uncharacterized, and
named for member MSMEG_2516 from Mycobacterium smegmatis
[Unknown function, Enzymes of unknown specificity].
Length = 295
Score = 26.2 bits (58), Expect = 5.0
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 111 LELAQKFHELGYSLYCVPD 129
++LA++ + G+ + VPD
Sbjct: 17 VDLARRAEDAGFDVLTVPD 35
>gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA.
This EngA2 subfamily CD represents the second GTPase
domain of EngA and its orthologs, which are composed of
two adjacent GTPase domains. Since the sequences of the
two domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct GTPases,
gave rise to this family. Although the exact function of
these proteins has not been elucidated, studies have
revealed that the E. coli EngA homolog, Der, and
Neisseria gonorrhoeae EngA are essential for cell
viability. A recent report suggests that E. coli Der
functions in ribosome assembly and stability.
Length = 174
Score = 25.5 bits (57), Expect = 7.3
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 15/62 (24%)
Query: 69 SEDIESSDLVIAHAGAGTSLEVLEAGKLLITVVN--------QSLMDNHQLELAQKFHEL 120
SE I DL IA +LE GK LI VVN + M + EL +K L
Sbjct: 95 SEGITEQDLRIAG-------LILEEGKALIIVVNKWDLVEKDEKTMKEFEKELRRKLPFL 147
Query: 121 GY 122
Y
Sbjct: 148 DY 149
>gnl|CDD|185433 PTZ00079, PTZ00079, NADP-specific glutamate dehydrogenase;
Provisional.
Length = 454
Score = 25.8 bits (57), Expect = 7.8
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 83 GAGTSLEVLEAGKLLITVVNQSLMDNHQLELAQKFHELGYSL 124
G + L V + L V D +Q E Q FHE+ SL
Sbjct: 3 GYNSELSVAQEMDALRKRVKS--RDPNQPEFLQAFHEVMTSL 42
>gnl|CDD|221281 pfam11871, DUF3391, Domain of unknown function (DUF3391). This
domain is functionally uncharacterized. This domain is
found in bacteria. This presumed domain is typically
between 122 to 139 amino acids in length. This domain
is found associated with pfam01966.
Length = 127
Score = 25.3 bits (56), Expect = 8.0
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 21 KIQSKEILKILKSKGCKKLIIQHGNGDIKP 50
I+S+ ++ L+ G K + I P
Sbjct: 34 LIKSEADIERLRKSGVKYVWIDTSKSLDVP 63
>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated.
Length = 332
Score = 25.9 bits (57), Expect = 8.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 63 DYKSSISEDIESSDLVIAH 81
DYK +I E +E +D+V H
Sbjct: 189 DYKDTIEEAVEGADIVTLH 207
>gnl|CDD|223140 COG0062, COG0062, Uncharacterized conserved protein [Function
unknown].
Length = 203
Score = 25.3 bits (56), Expect = 9.7
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 67 SISEDIESSDLVI-AHAGAGTSLEVLEAGKLLITVVNQS 104
+ ++ ES+D+++ A G G S + E LI +N S
Sbjct: 112 ELEDEPESADVIVDALFGTGLSGPLREPFASLIEAINAS 150
>gnl|CDD|233153 TIGR00857, pyrC_multi, dihydroorotase, multifunctional complex
type. In contrast to the homodimeric type of
dihydroorotase found in E. coli, this class tends to
appear in a large, multifunctional complex with
aspartate transcarbamoylase. Homologous domains appear
in multifunctional proteins of higher eukaryotes. In
some species, including Pseudomonas putida and P.
aeruginosa, this protein is inactive but is required as
a non-catalytic subunit of aspartate transcarbamoylase
(ATCase). In these species, a second, active
dihydroorotase is also present. The seed for this model
does not include any example of the dihydroorotase
domain of eukaryotic multidomain pyrimidine synthesis
proteins. All proteins described by This model should
represent active and inactive dihydroorotase per se and
functionally equivalent domains of multifunctional
proteins from higher eukaryotes, but exclude related
proteins such as allantoinase [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 411
Score = 25.5 bits (56), Expect = 9.8
Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 9/71 (12%)
Query: 16 DELIDKIQSKEILKILKSKGCKKLIIQHGNGDIKPNITESGLTVHSYDYKSSISEDIESS 75
I KI I + K L++ G D L VH D EDIES
Sbjct: 12 GGRIKKIGKLRIPPDAEVIDAKGLLVLPGFID---------LHVHLRDPGEEYKEDIESG 62
Query: 76 DLVIAHAGAGT 86
AH G T
Sbjct: 63 SKAAAHGGFTT 73
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.133 0.364
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,239,092
Number of extensions: 543688
Number of successful extensions: 655
Number of sequences better than 10.0: 1
Number of HSP's gapped: 650
Number of HSP's successfully gapped: 57
Length of query: 129
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 43
Effective length of database: 7,123,158
Effective search space: 306295794
Effective search space used: 306295794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.1 bits)