RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14775
(129 letters)
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like
fold, endoplasmic reticulum, glycosyltransferase,
structural genomics; NMR {Saccharomyces cerevisiae} PDB:
2ks6_A
Length = 224
Score = 119 bits (298), Expect = 9e-35
Identities = 52/162 (32%), Positives = 68/162 (41%), Gaps = 33/162 (20%)
Query: 1 MALSQVFVTVGTT-KFDELIDKIQSKEILKILKSKGCKKLIIQHGNGDIKPNI------- 52
+ +FVT G T F +L+ + S E + L G +LIIQ G
Sbjct: 26 IEEKALFVTCGATVPFPKLVSCVLSDEFCQELIQYGFVRLIIQFGRNYSSEFEHLVQERG 85
Query: 53 ------------------------TESGLTVHSYDYKSSISEDIES-SDLVIAHAGAGTS 87
L V +D+ + + I SDLVI+HAG G+
Sbjct: 86 GQRESQKIPIDQFGCGDTARQYVLMNGKLKVIGFDFSTKMQSIIRDYSDLVISHAGTGSI 145
Query: 88 LEVLEAGKLLITVVNQSLMDNHQLELAQKFHELGYSLYCVPD 129
L+ L K LI VN SLMDNHQ ++A KF ELGY C P
Sbjct: 146 LDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSCAPT 187
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
1.88A {Streptomyces fradiae}
Length = 384
Score = 36.7 bits (85), Expect = 8e-04
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 76 DLVIAHAGAGTSLEVLEAGKLLITVVNQSLMDNHQLELAQKFHELG 121
DL++ HAG ++L L AG + ++ + A++ + G
Sbjct: 281 DLLVHHAGGVSTLTGLSAGVPQL-LIPKG-SV--LEAPARRVADYG 322
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Length = 391
Score = 36.3 bits (84), Expect = 0.001
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 76 DLVIAHAGAGTSLEVLEAGKLLITVVNQSLMDNHQLELAQKFHELG 121
+LVI G+GT+ G + V+ Q D Q + A+ G
Sbjct: 288 ELVICAGGSGTAFTATRLGIPQL-VLPQY-FD--QFDYARNLAAAG 329
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 36.0 bits (83), Expect = 0.002
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 76 DLVIAHAGAGTSLEVLEAG 94
V+ H G GT + ++AG
Sbjct: 301 TAVVHHGGGGTVMTAIDAG 319
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold,
glycopeptide, VACO antibiotic, transferase-antibiotic
complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A
{Amycolatopsis orientalis} SCOP: c.87.1.5
Length = 416
Score = 35.2 bits (81), Expect = 0.003
Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 12/117 (10%)
Query: 6 VFVTVGTTKFDELIDKIQSKEILKILKSKGCKKLIIQHGNGDIK-PNITESGLTVHSYDY 64
V + G++ + D + ++ ++++G + +I+ G ++ P+ + + ++
Sbjct: 240 VHIGFGSSSGRGIADAAKV--AVEAIRAQGRR-VILSRGWTELVLPDDRDDCFAIDEVNF 296
Query: 65 KSSISEDIESSDLVIAHAGAGTSLEVLEAGKLLITVVNQSLMDNHQLELAQKFHELG 121
VI H AGT AG +V D Q A + LG
Sbjct: 297 ----QALFRRVAAVIHHGSAGTEHVATRAGV--PQLVIPRNTD--QPYFAGRVAALG 345
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 35.0 bits (81), Expect = 0.003
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 76 DLVIAHAGAGTSLEVLEAGKLLITVVNQSLMDNHQLELAQKFHELG 121
DLV+ H G+GT+L L AG + + D AQ + G
Sbjct: 310 DLVVHHGGSGTTLGALGAGVPQL-SFPWA-GD--SFANAQAVAQAG 351
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 34.9 bits (80), Expect = 0.003
Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 14/117 (11%)
Query: 6 VFVTVGTTK-FDELIDKIQSKEILKILKSKGCKKLIIQHGNGDIKPNITESGLTVHSYDY 64
V+V G+ E + ++ ++++G + ++ G + + + L V ++
Sbjct: 224 VYVGFGSGPAPAEAA-----RVAIEAVRAQGRRVVLSSGWAGLGRIDEGDDCLVVGEVNH 278
Query: 65 KSSISEDIESSDLVIAHAGAGTSLEVLEAGKLLITVVNQSLMDNHQLELAQKFHELG 121
V+ H GAGT+ V AG VV D Q A + +LG
Sbjct: 279 ----QVLFGRVAAVVHHGGAGTTTAVTRAGA--PQVVVPQKAD--QPYYAGRVADLG 327
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 34.8 bits (80), Expect = 0.004
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 6 VFVTVGTTKFDELIDKIQSKEILKILKSKGCKKLIIQHGNGDIKPNITESGLTVHSYDYK 65
V V++G+ F + + E ++ + L++Q G + E V +D+
Sbjct: 235 VLVSLGSA-FTKQPAFYR--ECVRAFGNLPGWHLVLQIGRKVTPAELGELPDNVEVHDW- 290
Query: 66 SSIS-EDI-ESSDLVIAHAGAGTSLEVLEAG 94
+ I +DL + HAGAG S E L
Sbjct: 291 --VPQLAILRQADLFVTHAGAGGSQEGLATA 319
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 34.8 bits (80), Expect = 0.004
Identities = 4/19 (21%), Positives = 6/19 (31%)
Query: 76 DLVIAHAGAGTSLEVLEAG 94
+ H G G+ G
Sbjct: 337 AATVHHGGPGSWHTAAIHG 355
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
enzyme discovery for natural product biosynthesis,
natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Length = 398
Score = 34.3 bits (79), Expect = 0.007
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 76 DLVIAHAGAGTSLEVLEAGKLLITVVNQSLMDNHQLELAQKFHELG 121
D+V+ H G GT+L L G + V + + A+ H G
Sbjct: 302 DVVVHHGGHGTTLTCLSEGVPQV-SVPVI-AE--VWDSARLLHAAG 343
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 34.1 bits (78), Expect = 0.009
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 76 DLVIAHAGAGTSLEVLEAGKLLITVVNQSLMDNHQLELAQKFHELG 121
VI H GAGT+ AG ++ + D Q A + ELG
Sbjct: 303 AAVIHHGGAGTTHVAARAGA--PQILLPQMAD--QPYYAGRVAELG 344
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
{Micromonospora echinospora}
Length = 402
Score = 33.5 bits (77), Expect = 0.011
Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 26/125 (20%)
Query: 6 VFVTVGTTKFDELIDKIQSKEILKILKSKGCKKLIIQHGN-------GDIKPNITESGLT 58
+ V++G F+E + + + +++ G G + PN
Sbjct: 234 LLVSLGNQ-FNEHPEFFR--ACAQAFADTPWH-VVMAIGGFLDPAVLGPLPPN------- 282
Query: 59 VHSYDYKSSISED--IESSDLVIAHAGAGTSLEVLEAGKLLITVVNQSLMDNHQLELAQK 116
V ++ + I + + + H G LE AG L+ V A++
Sbjct: 283 VEAHQW---IPFHSVLAHARACLTHGTTGAVLEAFAAGVPLVLV---PHFATEAAPSAER 336
Query: 117 FHELG 121
ELG
Sbjct: 337 VIELG 341
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 33.1 bits (76), Expect = 0.013
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 76 DLVIAHAGAGTSLEVLEAGK 95
+ + H G GT +E L G+
Sbjct: 315 TVCVTHGGMGTLMEALYWGR 334
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.019
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 38/137 (27%)
Query: 5 QVF-VTVGTTKFDELIDKIQSKEILKILKSKGCKKLIIQHGNGDIKPNITESGLTVHSYD 63
++F + + E +L++L+ KL+ Q I PN T HS +
Sbjct: 183 KIFWLNLKNCNSPE--------TVLEMLQ-----KLLYQ-----IDPNWTSRSD--HSSN 222
Query: 64 YKSSISEDIESSDLVIAHAGAGTSL---------EVLEA---G-KLLITVVNQSLMD--- 107
K I ++ L + A K+L+T + + D
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 108 -NHQLELAQKFHELGYS 123
++ H + +
Sbjct: 283 AATTTHISLDHHSMTLT 299
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.031
Identities = 17/114 (14%), Positives = 41/114 (35%), Gaps = 24/114 (21%)
Query: 3 LSQVFVTVGTTKFDELIDKIQSKEILKILKSKGCKKLIIQ--HGNGDIKPNITESGLTVH 60
++ V + + ++ ++ + +L G + + N + P+I E L
Sbjct: 278 VTAVAIAETDS-WESFFV--SVRKAITVLFFIGVR---CYEAYPNTSLPPSILEDSLEN- 330
Query: 61 SYDYKSSISEDIESSDLVIAHAGAGTSLEVLEAGKLLITVVNQSLMDNHQLELA 114
+E + S L I+ + E ++ + N L Q+E++
Sbjct: 331 --------NEGVPSPMLSIS----NLTQEQVQD---YVNKTNSHLPAGKQVEIS 369
Score = 28.1 bits (62), Expect = 0.84
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 4 SQVFVTVGTTKFDELIDKIQSKEILKILKSKGCKKLIIQH 43
Q V G + +D + +L +K + + +Q
Sbjct: 1851 QQY-VAAGDLR---ALDTVT--NVLNFIKLQKIDIIELQK 1884
Score = 27.7 bits (61), Expect = 1.3
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 33/77 (42%)
Query: 24 SKEILKILKSKGCKKLIIQHGNGDIKPNITESGLTVHS---YDYKSSISEDIESSDLVIA 80
K + LKSK G I + T +G HS Y + L +
Sbjct: 1740 EKAAFEDLKSK-----------GLIPADATFAG---HSLGEY------------AALA-S 1772
Query: 81 HAGAGTSLEVLEAGKLL 97
A S+E +++
Sbjct: 1773 LADV-MSIE--SLVEVV 1786
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 32.1 bits (74), Expect = 0.038
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 80 AHAGAGTSLEVLEAGKLLITVVNQSLMD-NHQLELAQKFHELGYSLY 125
A G+ ++++ + G+ L++V D ++LA K + G+ L
Sbjct: 931 AQLGSNSTMK--KHGRALLSVREG---DKERVVDLAAKLLKQGFELD 972
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 31.2 bits (71), Expect = 0.069
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 76 DLVIAHAGAGTSLEVLEAG 94
I HAG G+++E L
Sbjct: 323 SAFITHAGMGSTMEALSNA 341
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll,
protein-protein complex, DNA binding protein; NMR {Mus
musculus} SCOP: d.15.2.1
Length = 100
Score = 28.0 bits (62), Expect = 0.39
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 28 LKILKSKGCKKLIIQHGNGDIKPNITESGLTVHSYDYKSSISEDIESSDLVIAHAG 83
L+ L+SK C+ L I I + E G V DY + + + V
Sbjct: 39 LEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLPSNTK---FVALACN 91
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics,
protein structure INI nysgrc, PSI-biology; 2.90A
{Sinorhizobium meliloti}
Length = 521
Score = 28.8 bits (65), Expect = 0.56
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 1 MALSQVFVTVGTTKFDELIDKIQSK-EILKI 30
MA+S V V VG + LIDK+ E L+I
Sbjct: 305 MAIS-VAVPVGEETANRLIDKLVPMVESLRI 334
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho;
thiamine diphosphate-dependent enzyme, alpha-beta fold;
HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A*
3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Length = 845
Score = 28.5 bits (63), Expect = 0.58
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 67 SISEDIESSDLVIAHAGAGTSLEVLEAGKLL 97
S +E+ + +V+A AG + E++ A L
Sbjct: 652 SNAENNDEVQVVLASAGDVPTQELMAASDAL 682
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein,
structural genomics, NPPSFA; 1.98A {Homo sapiens}
Length = 143
Score = 27.9 bits (63), Expect = 0.65
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 111 LELAQKFHELGYSLY 125
L +A++ H G+ L+
Sbjct: 40 LGVAEQLHNEGFKLF 54
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 26.4 bits (58), Expect = 2.7
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 23 QSKEILKILKSKGCKKLIIQHGNGDIKPNITESGLTVHSYDYKSSISEDIESSDLVIAHA 82
+ + G + I G G KPN + + V Y D I
Sbjct: 14 LVPRGSHMEEDGGIIRRIQTRGEGYAKPN-EGAIVEVALEGYYKDKLFDQRELRFEI--- 69
Query: 83 GAGTSLEVLEA 93
G G +L++
Sbjct: 70 GEGENLDLPYG 80
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 26.7 bits (60), Expect = 2.8
Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 15/62 (24%)
Query: 69 SEDIESSDLVIAHAGAGTSLEVLEAGKLLITVVN--------QSLMDNHQLELAQKFHEL 120
E I D IA EAGK ++ VVN +S M + + F L
Sbjct: 268 EEGIIEQDKRIAG-------YAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL 320
Query: 121 GY 122
Y
Sbjct: 321 DY 322
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller,
glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB:
4e8c_A
Length = 595
Score = 26.6 bits (58), Expect = 3.1
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 58 TVHSYDYKSSISEDIE 73
V SYDY + + E+
Sbjct: 299 QVTSYDYDALLDEEGN 314
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II,
NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides
thetaiotaomicron vpi-5482}
Length = 612
Score = 26.6 bits (58), Expect = 3.4
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 50 PNITESGLTVHSYDYKSSISED 71
N T SYDY + I+E
Sbjct: 291 ANFPNFSPTCTSYDYDAPINES 312
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide)
pyrophosphoryl-undecaprenol...; rossmann fold,
transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2
PDB: 1nlm_A*
Length = 364
Score = 25.9 bits (58), Expect = 4.9
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 13/42 (30%)
Query: 75 SDLVIAHAGAGTSLEVLEAGK--LLI----TVVNQSLMDNHQ 110
+D+V+ +GA T E+ AG L + D Q
Sbjct: 255 ADVVVCRSGALTVSEIAAAGLPALFVPFQHK-------DRQQ 289
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic;
probable 2-haloalkanoic acid dehalogenase, hydrolase,
structural genomics; 2.40A {Sulfolobus tokodaii}
Length = 220
Score = 25.4 bits (56), Expect = 5.6
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 25 KEILKILKSKGCKKLIIQHGNGDIKPNITESGL 57
E L+ LKS G K ++ + + +K + + L
Sbjct: 101 LEFLEGLKSNGYKLALVSNASPRVKTLLEKFDL 133
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2
inhibitor, SHH signalling antagonist, structural
genomics consortium, SGC; 1.60A {Homo sapiens} PDB:
2f2d_A 3ey6_A
Length = 118
Score = 24.5 bits (54), Expect = 8.3
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 23 QSKEILKILKSKGCKKLIIQHGNGDIKPNITESGLTVH 60
+E L IL + +K + G + +TVH
Sbjct: 2 SPEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVH 39
>1r9h_A FKB-6, FK506 binding protein family; structural genomics,
peptidylprolyl isomerase, PSI, protein structure
initiative; 1.80A {Caenorhabditis elegans} SCOP:
d.26.1.1
Length = 135
Score = 24.5 bits (54), Expect = 8.7
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 35 GCKKLIIQHGNGDIKPNITESGLTVH 60
G KLI + G G +KP + + VH
Sbjct: 15 GVLKLIKKEGQGVVKPTTGTT-VKVH 39
>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3,
haloacid dehalogenase-like hydrolase domain containin
structural genomics; 1.55A {Homo sapiens}
Length = 263
Score = 25.1 bits (55), Expect = 8.8
Identities = 5/33 (15%), Positives = 18/33 (54%)
Query: 25 KEILKILKSKGCKKLIIQHGNGDIKPNITESGL 57
++ L+ +++G + +I + + ++ + GL
Sbjct: 112 EDTLRECRTRGLRLAVISNFDRRLEGILGGLGL 144
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 25.2 bits (56), Expect = 8.8
Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 15/62 (24%)
Query: 69 SEDIESSDLVIAHAGAGTSLEVLEAGKLLITVVN--------QSLMDNHQLELAQKFHEL 120
++ I D +A + G+ + V N + D +K + +
Sbjct: 274 TQGITRQDQRMAG-------LMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFI 326
Query: 121 GY 122
Y
Sbjct: 327 DY 328
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.364
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,874,162
Number of extensions: 104741
Number of successful extensions: 328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 50
Length of query: 129
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,384,350
Effective search space: 201680100
Effective search space used: 201680100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (23.9 bits)