RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14775
(129 letters)
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 391
Score = 33.1 bits (74), Expect = 0.006
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 4/99 (4%)
Query: 26 EILKILKSKGCKKLIIQHGNGDIKPNITESGLTVHSYDYKSSISEDIESSDLVIAHAGAG 85
+K +++ G + ++ + + P+ V + + E I H AG
Sbjct: 242 MAIKAVRASGRRIVLSRGWADLVLPDDGADCFVVGEVNLQ----ELFGRVAAAIHHDSAG 297
Query: 86 TSLEVLEAGKLLITVVNQSLMDNHQLELAQKFHELGYSL 124
T+L + AG I V Q A + ELG +
Sbjct: 298 TTLLAMRAGIPQIVVRRVVDNVVEQAYHADRVAELGVGV 336
>d1f2ri_ d.15.2.1 (I:) Inhibitor of caspase-activated DNase
(ICAD), DFF45, N-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 100
Score = 27.5 bits (61), Expect = 0.21
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 28 LKILKSKGCKKLIIQHGNGDIKPNITESGLTVHSYDYKSSISEDIESSDLVIAHAG 83
L+ L+SK C+ L I I + E G V DY + + + V
Sbjct: 39 LEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLPSNTK---FVALACN 91
>d2e1za2 c.55.1.2 (A:193-397) Propionate kinase {Salmonella
typhimurium [TaxId: 90371]}
Length = 205
Score = 27.5 bits (61), Expect = 0.38
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 71 DIESSDLVIAHAGAGTSLEVLEAGK 95
D + S L++AH G G S+ + G+
Sbjct: 1 DEKDSGLIVAHLGNGASICAVRNGQ 25
>d1o57a1 a.4.5.40 (A:2-74) N-terminal domain of Bacillus PurR
{Bacillus subtilis [TaxId: 1423]}
Length = 73
Score = 24.6 bits (54), Expect = 1.9
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 65 KSSISEDIESSDLVIAHAGAGT 86
KSSISED+ G GT
Sbjct: 36 KSSISEDLTIIKQTFEQQGIGT 57
>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase
PpnK {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 249
Score = 25.5 bits (55), Expect = 2.3
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 61 SYDYKSSISEDIESSDLVIAHAGAGTSLEVLEA 93
+ + SE++E+ D +++ G GT L +L+
Sbjct: 26 EVELFNQPSEELENFDFIVSVGGDGTILRILQK 58
>d1g99a2 c.55.1.2 (A:198-398) Acetate kinase {Archaeon
Methanosarcina thermophila [TaxId: 2210]}
Length = 201
Score = 24.7 bits (54), Expect = 3.0
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 72 IESSDLVIAHAGAGTSLEVLEAGK 95
E + ++ H G G+S+ +E GK
Sbjct: 2 AEETKIITCHLGNGSSITAVEGGK 25
>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 118
Score = 24.7 bits (53), Expect = 3.0
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 32 KSKGCKKLIIQHGNGDIKPNITESGLTVH 60
K G KLI + G G +KP + + VH
Sbjct: 8 KDGGVLKLIKKEGQGVVKPTTGTT-VKVH 35
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 115
Score = 24.2 bits (52), Expect = 3.9
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 29 KILKSKGCKKLIIQHGNGDIKPNITESGLTVH 60
+L+ G + + G G PN + +H
Sbjct: 3 DLLEDGGIIRRTKRRGEGYSNPNEGAR-VQIH 33
>d1toaa_ c.92.2.2 (A:) Periplasmic zinc binding protein TroA
{Treponema pallidum [TaxId: 160]}
Length = 277
Score = 24.6 bits (52), Expect = 4.1
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 51 NITESGLTVHSYDYKSSISEDIESSDLVIAH 81
+ G+ H Y + E + ++DL++ +
Sbjct: 28 GLMGPGVDPHLYTATAGDVEWLGNADLILYN 58
>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus
[TaxId: 274]}
Length = 390
Score = 24.7 bits (53), Expect = 4.2
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 20/74 (27%)
Query: 24 SKEILKIL-KSKGCKKLIIQHGNGDIKPNITESGLTVHSYDYKSSISEDIESSDLVIAHA 82
+ + + + +G ++ G GD + GL + +S
Sbjct: 328 TLAVGQAIAALEGAFTVV---GGGDSVAAVNRLGLK----ERFGHVST------------ 368
Query: 83 GAGTSLEVLEAGKL 96
G G SLE LE G L
Sbjct: 369 GGGASLEFLEKGTL 382
>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 113
Score = 24.0 bits (51), Expect = 5.0
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 83 GAGTSLEVLE 92
G GT L V+E
Sbjct: 104 GQGTRLTVVE 113
>d1saza2 c.55.1.2 (A:173-375) butyrate kinase 2 {Thermotoga
maritima [TaxId: 2336]}
Length = 203
Score = 24.3 bits (53), Expect = 5.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 73 ESSDLVIAHAGAGTSLEVLEAGK 95
E +LV+AH G G S+ G+
Sbjct: 2 EEMNLVVAHMGGGISIAAHRKGR 24
>d1a9xa2 c.24.1.1 (A:936-1073) Carbamoyl phosphate synthetase, large
subunit allosteric, C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 138
Score = 23.7 bits (51), Expect = 6.3
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 94 GKLLITVVNQSLMDNHQL-ELAQKFHELGYSLYC 126
G+ L++V D ++ +LA K + G+ L
Sbjct: 8 GRALLSVREG---DKERVVDLAAKLLKQGFELDA 38
>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 415
Score = 23.9 bits (51), Expect = 7.2
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 16/73 (21%)
Query: 24 SKEILKILKSKGCKKLIIQHGNGDIKPNITESGLTVHSYDYKSSISEDIESSDLVIAHAG 83
+K +L + + G GD + G+T D S +S G
Sbjct: 349 TKALLDEVVKSSAAGNTVIIGGGDTATVAKKYGVT----DKISHVST------------G 392
Query: 84 AGTSLEVLEAGKL 96
G SLE+LE +L
Sbjct: 393 GGASLELLEGKEL 405
>d1pq4a_ c.92.2.2 (A:) Periplasmic zinc binding protein ZnuA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 289
Score = 23.7 bits (50), Expect = 7.9
Identities = 3/31 (9%), Positives = 10/31 (32%)
Query: 51 NITESGLTVHSYDYKSSISEDIESSDLVIAH 81
+ H+Y+ K + ++ +
Sbjct: 28 VLVPGNNDPHTYEPKPQQLAALSEAEAYVLI 58
>d1b5ea_ d.117.1.1 (A:) dCMP hydroxymethylase {Bacteriophage T4
[TaxId: 10665]}
Length = 241
Score = 23.5 bits (50), Expect = 9.5
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 77 LVIAHAGAGTSLEVLEAGKLLITVVNQSLMDNHQLELAQKFHELGY 122
+++ AG S +AG ++ V + + H L + + G
Sbjct: 189 KLVSDLNAGDSTRQYKAGSIIWNVGSLHVYSRH-FYLVDHWWKTGE 233
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.133 0.364
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 447,611
Number of extensions: 18838
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 26
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (22.5 bits)