BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14776
         (1022 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|189241708|ref|XP_967454.2| PREDICTED: similar to ribonuclease iii [Tribolium castaneum]
          Length = 1180

 Score = 1061 bits (2744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/800 (63%), Positives = 615/800 (76%), Gaps = 22/800 (2%)

Query: 229  LDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDSY-EC 287
            L KWR N CS+  E++ K + LA ++ ++++E+EK IWTRS P+DLYY K   +      
Sbjct: 141  LSKWRKNYCSTREEVSNKIHELAKVDHEEVLEQEKNIWTRSTPSDLYYRKDESNARVTRA 200

Query: 288  TQKTRTICDEF-ESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVS 346
            T++   +CD+F + ++     V + KP+++            RK   R C H        
Sbjct: 201  TKRLTQLCDKFNDCLVMRAAKVNKLKPKYEPPP---------RKNRARLCKH-------K 244

Query: 347  SGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSR 406
            S   SSS SS  E   EED  M ELQ KQ HPDRLHPE+W+ND GEMNDGPLCRCS KSR
Sbjct: 245  SEESSSSGSSEEELTDEEDCTMEELQRKQQHPDRLHPEMWYNDPGEMNDGPLCRCSIKSR 304

Query: 407  RSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEG 466
            +SGIRH IY GE     C PD+NNA++LYHYR+T+SPPTNFLI  PT+I +D  EFIFEG
Sbjct: 305  KSGIRHGIYPGEKHLEKCVPDSNNAERLYHYRITISPPTNFLIKTPTIIHYDEHEFIFEG 364

Query: 467  FSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLD 526
            FS+FSH PLEKLPTCKVIRFNI+YTI+YIEEK+P+ FTV++ +LF +YLF EILELVDLD
Sbjct: 365  FSMFSHFPLEKLPTCKVIRFNIEYTILYIEEKIPDNFTVRELDLFHDYLFREILELVDLD 424

Query: 527  LKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLS 586
             K+A + DGC QFH MPRFVREL DNGKE+L M  VL++   S V +I EK  +    ++
Sbjct: 425  FKAAGDVDGCSQFHFMPRFVRELPDNGKEILAMNEVLQYLLDSSVSLIEEKDLEDMIKMT 484

Query: 587  TYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDR----ESETNDIYPDAVHFGSRPLQLCF 642
             YEWQ +AD +KGM++  PG KPC++RVDQLDR    +   +  +P+ VHFG RP QL +
Sbjct: 485  QYEWQSYADEIKGMVVTYPGKKPCSVRVDQLDRNIDLQKPGDYKFPEIVHFGIRPPQLSY 544

Query: 643  AGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISS 702
            AG+PD+QK W+ YVK RHL+AN  K T EDKR+L +KE +LQEMRT  KMKR +TVA+S+
Sbjct: 545  AGNPDYQKAWRDYVKFRHLLANMSKPTFEDKRKLESKENKLQEMRTQGKMKRDITVAVSA 604

Query: 703  RGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRE 762
             GFYRTGIMCD++QHAMLIPVL+CHLRFH SLN+LE+ + YKF+NR LLQLALTHPSYRE
Sbjct: 605  EGFYRTGIMCDIIQHAMLIPVLVCHLRFHHSLNILEESVNYKFKNRALLQLALTHPSYRE 664

Query: 763  NFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITH 822
            NFGTNPDHARNSL+NCG+RQPEYGDRRIH+ NTRKRGINTLINIMS+ G++  TESNITH
Sbjct: 665  NFGTNPDHARNSLTNCGIRQPEYGDRRIHYMNTRKRGINTLINIMSRFGKQQETESNITH 724

Query: 823  NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
            NERLEFLGDAVVEF++SIHLF+ FPD+EEGGLATYRAAIVQNQHLA LAK + L+ FMLY
Sbjct: 725  NERLEFLGDAVVEFLSSIHLFYTFPDLEEGGLATYRAAIVQNQHLAVLAKTLKLDQFMLY 784

Query: 883  AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 942
            AHGSDLCH++EL+HAMANCFEALMGALFLDGGI+V D+VFS  L+K N    + WM  P 
Sbjct: 785  AHGSDLCHDLELRHAMANCFEALMGALFLDGGINVVDRVFSETLFKVNPDLLEVWMNLPP 844

Query: 943  HPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSN 1002
            HPLQEQEP GDR+W+ +  LL+ L   E S G+ FNHIRLLAR FT RS+GYTNLTLGSN
Sbjct: 845  HPLQEQEPTGDREWIPKFELLQNLTKFEESVGLQFNHIRLLARAFTDRSVGYTNLTLGSN 904

Query: 1003 QRLEFLGDTVLQLITSDYLY 1022
            QRLEFLGDTVLQLI S+YLY
Sbjct: 905  QRLEFLGDTVLQLIASEYLY 924



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 65/111 (58%), Gaps = 7/111 (6%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 897  TNLTLGSNQRLEFLGDTVLQLIASEYLYKYFPEHHEGHLSLLRSSLVNNRTQAVVCDDLG 956

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSV 925
            + ++ +Y +      + ELK    A+  EA +GAL++D G++   +VF  V
Sbjct: 957  MSNYAVYNNP-----KAELKTKDRADLLEAFIGALYVDQGLEFC-EVFCQV 1001


>gi|270001216|gb|EEZ97663.1| hypothetical protein TcasGA2_TC016208 [Tribolium castaneum]
          Length = 1063

 Score = 1056 bits (2732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/800 (63%), Positives = 615/800 (76%), Gaps = 22/800 (2%)

Query: 229  LDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDSY-EC 287
            L KWR N CS+  E++ K + LA ++ ++++E+EK IWTRS P+DLYY K   +      
Sbjct: 141  LSKWRKNYCSTREEVSNKIHELAKVDHEEVLEQEKNIWTRSTPSDLYYRKDESNARVTRA 200

Query: 288  TQKTRTICDEF-ESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVS 346
            T++   +CD+F + ++     V + KP+++            RK   R C H        
Sbjct: 201  TKRLTQLCDKFNDCLVMRAAKVNKLKPKYEPPP---------RKNRARLCKH-------K 244

Query: 347  SGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSR 406
            S   SSS SS  E   EED  M ELQ KQ HPDRLHPE+W+ND GEMNDGPLCRCS KSR
Sbjct: 245  SEESSSSGSSEEELTDEEDCTMEELQRKQQHPDRLHPEMWYNDPGEMNDGPLCRCSIKSR 304

Query: 407  RSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEG 466
            +SGIRH IY GE     C PD+NNA++LYHYR+T+SPPTNFLI  PT+I +D  EFIFEG
Sbjct: 305  KSGIRHGIYPGEKHLEKCVPDSNNAERLYHYRITISPPTNFLIKTPTIIHYDEHEFIFEG 364

Query: 467  FSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLD 526
            FS+FSH PLEKLPTCKVIRFNI+YTI+YIEEK+P+ FTV++ +LF +YLF EILELVDLD
Sbjct: 365  FSMFSHFPLEKLPTCKVIRFNIEYTILYIEEKIPDNFTVRELDLFHDYLFREILELVDLD 424

Query: 527  LKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLS 586
             K+A + DGC QFH MPRFVREL DNGKE+L M  VL++   S V +I EK  +    ++
Sbjct: 425  FKAAGDVDGCSQFHFMPRFVRELPDNGKEILAMNEVLQYLLDSSVSLIEEKDLEDMIKMT 484

Query: 587  TYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDR----ESETNDIYPDAVHFGSRPLQLCF 642
             YEWQ +AD +KGM++  PG KPC++RVDQLDR    +   +  +P+ VHFG RP QL +
Sbjct: 485  QYEWQSYADEIKGMVVTYPGKKPCSVRVDQLDRNIDLQKPGDYKFPEIVHFGIRPPQLSY 544

Query: 643  AGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISS 702
            AG+PD+QK W+ YVK RHL+AN  K T EDKR+L +KE +LQEMRT  KMKR +TVA+S+
Sbjct: 545  AGNPDYQKAWRDYVKFRHLLANMSKPTFEDKRKLESKENKLQEMRTQGKMKRDITVAVSA 604

Query: 703  RGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRE 762
             GFYRTGIMCD++QHAMLIPVL+CHLRFH SLN+LE+ + YKF+NR LLQLALTHPSYRE
Sbjct: 605  EGFYRTGIMCDIIQHAMLIPVLVCHLRFHHSLNILEESVNYKFKNRALLQLALTHPSYRE 664

Query: 763  NFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITH 822
            NFGTNPDHARNSL+NCG+RQPEYGDRRIH+ NTRKRGINTLINIMS+ G++  TESNITH
Sbjct: 665  NFGTNPDHARNSLTNCGIRQPEYGDRRIHYMNTRKRGINTLINIMSRFGKQQETESNITH 724

Query: 823  NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
            NERLEFLGDAVVEF++SIHLF+ FPD+EEGGLATYRAAIVQNQHLA LAK + L+ FMLY
Sbjct: 725  NERLEFLGDAVVEFLSSIHLFYTFPDLEEGGLATYRAAIVQNQHLAVLAKTLKLDQFMLY 784

Query: 883  AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 942
            AHGSDLCH++EL+HAMANCFEALMGALFLDGGI+V D+VFS  L+K N    + WM  P 
Sbjct: 785  AHGSDLCHDLELRHAMANCFEALMGALFLDGGINVVDRVFSETLFKVNPDLLEVWMNLPP 844

Query: 943  HPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSN 1002
            HPLQEQEP GDR+W+ +  LL+ L   E S G+ FNHIRLLAR FT RS+GYTNLTLGSN
Sbjct: 845  HPLQEQEPTGDREWIPKFELLQNLTKFEESVGLQFNHIRLLARAFTDRSVGYTNLTLGSN 904

Query: 1003 QRLEFLGDTVLQLITSDYLY 1022
            QRLEFLGDTVLQLI S+YLY
Sbjct: 905  QRLEFLGDTVLQLIASEYLY 924



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 65/111 (58%), Gaps = 7/111 (6%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 897  TNLTLGSNQRLEFLGDTVLQLIASEYLYKYFPEHHEGHLSLLRSSLVNNRTQAVVCDDLG 956

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSV 925
            + ++ +Y +      + ELK    A+  EA +GAL++D G++   +VF  V
Sbjct: 957  MSNYAVYNNP-----KAELKTKDRADLLEAFIGALYVDQGLEFC-EVFCQV 1001


>gi|332017989|gb|EGI58626.1| Ribonuclease 3 [Acromyrmex echinatior]
          Length = 1326

 Score = 1044 bits (2699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/847 (60%), Positives = 626/847 (73%), Gaps = 34/847 (4%)

Query: 184  RRRSRSKSRSESKSRSEVPRQACARRSRSRSRILSPKRSGEALSNLDKWRMNNCSSEREM 243
            R R RSKSR      S + +   +  +  R++ L+ +   E L  L+K+R N C++ +++
Sbjct: 273  RSRKRSKSR-----ESHLTKDTISTNNSKRTKSLTER---EIL--LEKYRRNYCATSKDI 322

Query: 244  TEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDS--YECTQKTRTICDEFES- 300
              K N L+ + +  ++E EKKIWTR++PADLYY  R E++S   + T K + +C  F+  
Sbjct: 323  KRKLNELSVLGSKGLLESEKKIWTRTSPADLYYV-RDENNSKIVKSTLKLQELCVTFKKM 381

Query: 301  VIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEE 360
            +I    + +E +P ++            RK   R C H       S    SSS S S   
Sbjct: 382  LIDRAAAARELQPPYEPPP---------RKTRARLCRH------KSEACSSSSSSDSDNS 426

Query: 361  DAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDE 420
              E+D  M EL  K+ HP RLHPE+WFND GEMNDGPLCRCS+KSRRSGIRH IYAGE  
Sbjct: 427  MDEDDRTMEELMAKKQHPQRLHPEMWFNDPGEMNDGPLCRCSAKSRRSGIRHGIYAGEGA 486

Query: 421  QAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPT 480
               C+ +TNNADKLYHYR+T+SPPTNFL   PT+I+HD  EFIFEGFS+ SH PL KLPT
Sbjct: 487  INKCDLNTNNADKLYHYRITISPPTNFLTKTPTIIKHDEHEFIFEGFSMLSHFPLVKLPT 546

Query: 481  CKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFH 540
            CKVIRFNI+YTI+YIEEK+P  FT+++ + F  YLF EILELVD DL +A +K GC QFH
Sbjct: 547  CKVIRFNIEYTILYIEEKLPENFTIQELDFFQTYLFKEILELVDFDLHAAQDKSGCGQFH 606

Query: 541  IMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGM 600
             MPRFVR+L DNG+E+L M  VL +   S   +I          +  Y+WQDFAD VKGM
Sbjct: 607  FMPRFVRDLTDNGQEILSMNEVLNYLIKSSTLLIDPDNLSRLVAMPQYKWQDFADEVKGM 666

Query: 601  IIVKPGSKPCAMRVDQLDRESE-----TNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGY 655
            ++  PG KPC++RVDQLDR  E     T   YP+ VHFG RP QL +AG+ D+QK W+ Y
Sbjct: 667  VVTYPGKKPCSVRVDQLDRNQEELCNKTLLTYPEIVHFGIRPPQLSYAGNADYQKAWRDY 726

Query: 656  VKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMV 715
            VK RHL+AN  K + EDKR+L AKE +LQE+RT SKMKR VTV +SS GFYRTGIMCD+V
Sbjct: 727  VKFRHLLANMSKPSFEDKRKLEAKENKLQELRTQSKMKRDVTVDVSSEGFYRTGIMCDIV 786

Query: 716  QHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSL 775
            QHAMLIPVL+CHLRFH+SL+ LE  + Y+F+NRYLLQLALTHPSYRENFGTNPDHARNSL
Sbjct: 787  QHAMLIPVLVCHLRFHKSLDNLERTLGYEFKNRYLLQLALTHPSYRENFGTNPDHARNSL 846

Query: 776  SNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVE 835
            +NCG+RQPEYGDRRIH+ NTRKRGINTLINIMS+ G K  TES+I HNERLEFLGDAVVE
Sbjct: 847  TNCGIRQPEYGDRRIHYMNTRKRGINTLINIMSRFGAKTETESSIAHNERLEFLGDAVVE 906

Query: 836  FITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELK 895
            F+TSIHLFH+FPD+EEGGLATYRAAIVQNQHLA LAK++ LE++MLYAHGSDLCH++EL+
Sbjct: 907  FLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEEYMLYAHGSDLCHDLELR 966

Query: 896  HAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQ 955
            HAMANCFEALMG+LFLDGGI+VAD+VF   L+K  E   K W+ YP+HPLQEQEP GDRQ
Sbjct: 967  HAMANCFEALMGSLFLDGGIEVADRVFGETLFKGEEDLAKVWVNYPRHPLQEQEPTGDRQ 1026

Query: 956  WVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQL 1015
            W+    LL++L   E S G+ F HIRLLAR FT RS+GYTNLTLGSNQRLEFLGDTVLQL
Sbjct: 1027 WISSFELLQKLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQL 1086

Query: 1016 ITSDYLY 1022
            I S+YLY
Sbjct: 1087 IVSEYLY 1093



 Score = 69.7 bits (169), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 63/113 (55%), Gaps = 7/113 (6%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 1066 TNLTLGSNQRLEFLGDTVLQLIVSEYLYKYFPEHHEGHLSLLRSSLVNNKTQAVVCDDLG 1125

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +  + LY +      + ELK    A+  EA +GAL++D G+     VF  V +
Sbjct: 1126 MTQYALYGNP-----KAELKTKDRADLLEAFLGALYVDKGLKYC-HVFCDVCF 1172


>gi|307208065|gb|EFN85596.1| Ribonuclease 3 [Harpegnathos saltator]
          Length = 1328

 Score = 1036 bits (2678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/887 (59%), Positives = 643/887 (72%), Gaps = 46/887 (5%)

Query: 154  RSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKSRSEVPRQACARRSRSR 213
            RSSSR     Y  R    +SS  R E++ + R S S++ + SK         C +RSRS+
Sbjct: 240  RSSSREYK--YKSRDFERRSSYKRHESH-QIRSSHSETYASSK---------CRKRSRSQ 287

Query: 214  SRILSPKRSGEALSN-----------LDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEE 262
               +S   +  + S            L+K+R N C++ +++  K + L+AM ++ I+E E
Sbjct: 288  ESHVSKDETQTSNSTKRKCPTERELLLEKYRRNYCATSKDIERKLDELSAMGSEGILESE 347

Query: 263  KKIWTRSAPADLYYTKRTEDDS--YECTQKTRTICDEFESV-IQNFVSVKESKPQFDYTA 319
            +KIWTR+APADLYY+ R E++      T K   +C  F+ + I    + +  +P +    
Sbjct: 348  RKIWTRTAPADLYYS-RDENNPKIMRSTSKLLDLCAVFKKLLIDRAAAARALQPPY---- 402

Query: 320  NRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPD 379
                 K   RK   R C H       S    SSSDS S     E+D  M EL  K+ HP 
Sbjct: 403  -----KPPPRKTRARLCRH------KSEACSSSSDSDSDSSMDEDDRTMEELMAKKQHPQ 451

Query: 380  RLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRV 439
            RLHPE+WFND GEMNDGPLCRCS+KSRRSGIRH IYAGE     C+ ++NNADKL+HYR+
Sbjct: 452  RLHPEMWFNDPGEMNDGPLCRCSAKSRRSGIRHGIYAGEGVINKCDLNSNNADKLHHYRI 511

Query: 440  TVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKV 499
            T+SPPTNFL   PT+I+HD  EFIFEGFS+ SH PL KLPTCKVIRFNI+YTI+YIEEK+
Sbjct: 512  TISPPTNFLTKTPTIIKHDEHEFIFEGFSMLSHFPLVKLPTCKVIRFNIEYTILYIEEKL 571

Query: 500  PNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLPM 559
            P  FT+++ + F  YLF EILELVD DL++A +K GC QFH MPRFVR+L DNG+E+L M
Sbjct: 572  PENFTIQELDYFQTYLFREILELVDFDLQAAQDKSGCGQFHFMPRFVRDLTDNGQEILSM 631

Query: 560  YRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDR 619
              VL +   S   +I+        ++  Y+WQDFAD VKGM++  PG KPC++RVDQLDR
Sbjct: 632  NEVLNYLIKSSTLLINPDDLPRLVEMPQYKWQDFADEVKGMVVTYPGKKPCSVRVDQLDR 691

Query: 620  ESETND----IYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRR 675
                       YP+ VHFG RP QL +AG+ D+QK W+ YVK RHL+AN  K + EDKR+
Sbjct: 692  SQVDQPPGVLAYPEIVHFGIRPPQLSYAGNADYQKAWRDYVKFRHLLANMSKPSYEDKRK 751

Query: 676  LAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLN 735
            L AKE RLQE+RT SKMKR VTV ++S GFYRTGIMCD+VQHAMLIPVL+CHLRFH+SL+
Sbjct: 752  LEAKENRLQELRTQSKMKRDVTVDVTSDGFYRTGIMCDIVQHAMLIPVLVCHLRFHKSLD 811

Query: 736  VLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNT 795
             LE  + Y+F+NRYLLQLALTHPSYRENFGTNPDHARNSL+NCG+RQPEYGDRRIH+ NT
Sbjct: 812  NLECTLGYEFKNRYLLQLALTHPSYRENFGTNPDHARNSLTNCGIRQPEYGDRRIHYMNT 871

Query: 796  RKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLA 855
            RKRGINTLINIMS+ G +  TES+I HNERLEFLGDAVVEF+TSIHLFH+FPD+EEGGLA
Sbjct: 872  RKRGINTLINIMSRFGARTETESSIAHNERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLA 931

Query: 856  TYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGI 915
            TYRAAIVQNQHLA LAK++ LE++MLYAHGSDLCH++EL+HAMANCFEALMG+LFLDGGI
Sbjct: 932  TYRAAIVQNQHLAVLAKKLNLEEYMLYAHGSDLCHDLELRHAMANCFEALMGSLFLDGGI 991

Query: 916  DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGV 975
            +VAD+VF   L+KD E   K W+ YP+HPLQEQEP GDRQW+    LL++L   E S G+
Sbjct: 992  EVADRVFGETLFKDEEDLAKVWVNYPRHPLQEQEPMGDRQWIPSFELLQKLTKFEESIGI 1051

Query: 976  IFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
             F HIRLLAR FT RS+GYTNLTLGSNQRLEFLGDTVLQLI S+YLY
Sbjct: 1052 KFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLY 1098



 Score = 69.7 bits (169), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 7/113 (6%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 1071 TNLTLGSNQRLEFLGDTVLQLIVSEYLYKFFPEHHEGHLSLLRSSLVNNKTQAVVCDDLG 1130

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +  + LY +      + ELK    A+  EA +GAL++D G      VF  V +
Sbjct: 1131 MTQYALYGNP-----KAELKTKDRADLLEAFLGALYVDKGFKYC-HVFCDVCF 1177


>gi|345483564|ref|XP_001601748.2| PREDICTED: ribonuclease 3-like [Nasonia vitripennis]
          Length = 1423

 Score = 1030 bits (2664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/820 (60%), Positives = 610/820 (74%), Gaps = 28/820 (3%)

Query: 210  SRSRSRILSPKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRS 269
            SRS + +   K   E    L+K+R N C++  ++  K N L   E+D ++E  +KIWTR+
Sbjct: 278  SRSTNNVAKRKSLSEREMLLEKYRQNYCATSEDIKRKLNEL---ESDGVLE--RKIWTRT 332

Query: 270  APADLYYTKRTEDDSY-ECTQKTRTICDEFESV-IQNFVSVKESKPQFDYTANRKKIKRT 327
            APADLYY++  +++   + T K   +CD+F+ + I    S +E +P ++  A      R 
Sbjct: 333  APADLYYSRDEKNNKLMKATGKLVQLCDDFKKILIDRASSARELQPPYEAPA------RK 386

Query: 328  NRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWF 387
            NR ++ R  S   S+ +  S      D  +          M EL  K+ HP RLHPE+WF
Sbjct: 387  NRARLCRHKSEACSSSSSDSDDSVDEDDRT----------MEELMAKKQHPQRLHPEMWF 436

Query: 388  NDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNF 447
            ND GEMNDGPLCRCS+KSRRSGIRH IYAGE     C+  TNNADKLYHYR+T+SPPTNF
Sbjct: 437  NDPGEMNDGPLCRCSAKSRRSGIRHGIYAGEGAIEKCDSHTNNADKLYHYRITISPPTNF 496

Query: 448  LINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKD 507
            L   PT+I+HD  EFIFEGFS+FSH PL KLPTCKVIRFNI+YTI+Y+EEK+P  FT+++
Sbjct: 497  LTKTPTIIKHDEHEFIFEGFSMFSHFPLVKLPTCKVIRFNIEYTILYMEEKMPENFTIQE 556

Query: 508  TELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFT 567
             + F +YLF+EILELVD DL++A +K GC QFH MPRFVR+L DNG+E+L M  VL +  
Sbjct: 557  LDYFQDYLFNEILELVDFDLQAAQDKKGCAQFHFMPRFVRDLPDNGQEILSMNEVLSYLI 616

Query: 568  SSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETND-- 625
                 +I         ++  ++WQ+FAD VKGM++  PG KPC++RVDQLDR        
Sbjct: 617  KCSTLLIDPDELPKLVEMPQFQWQNFADEVKGMVVTYPGKKPCSVRVDQLDRNQADQPPG 676

Query: 626  --IYPDAVHFGSRPLQLCFAGSP-DFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQR 682
               YP+ VHFG RP QL +A  P D+Q+ W+ YVK RHL+AN PK + EDKR+L AKE +
Sbjct: 677  VIAYPEIVHFGIRPPQLSYAEIPSDYQRAWRDYVKFRHLLANMPKPSFEDKRKLEAKENK 736

Query: 683  LQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQ 742
            LQE+RT SKMKR VTV ++S GFYRTGIMCD+VQHAMLIPVL+CHLRFH+SL++LE  + 
Sbjct: 737  LQELRTQSKMKRDVTVDVTSEGFYRTGIMCDIVQHAMLIPVLVCHLRFHKSLDMLEQTLD 796

Query: 743  YKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINT 802
            YKF+NRYLLQLALTHPSYRENFGTNPDHARNSL+NCG+RQPEYGDRRIH+ NTRKRGINT
Sbjct: 797  YKFKNRYLLQLALTHPSYRENFGTNPDHARNSLTNCGIRQPEYGDRRIHYMNTRKRGINT 856

Query: 803  LINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIV 862
            LINIMS+ G K  TES+I HNERLEFLGDAVVEF+TSIHLFH+FPD+EEGGLATYRAAIV
Sbjct: 857  LINIMSRFGAKKETESSIAHNERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIV 916

Query: 863  QNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            QNQHLA LAK++ LE +MLYAHGSDLCH++EL+HAMANCFEALMGALFLDGGI +AD VF
Sbjct: 917  QNQHLAVLAKKLNLEQYMLYAHGSDLCHDLELRHAMANCFEALMGALFLDGGIRIADTVF 976

Query: 923  SSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRL 982
               L+K+       W+ YP+HPLQEQEP GDRQW+    LL++L   E   GV F+HIRL
Sbjct: 977  GETLFKNESDLLNIWVNYPKHPLQEQEPTGDRQWIPSFELLQKLTKFEEGIGVEFSHIRL 1036

Query: 983  LARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            LAR FT RS+GYTNLTLGSNQRLEFLGDTVLQLI S+YLY
Sbjct: 1037 LARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLY 1076



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 66/113 (58%), Gaps = 7/113 (6%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 1049 TNLTLGSNQRLEFLGDTVLQLIVSEYLYKFFPEHHEGHLSLLRSSLVNNKTQAVVCDDLG 1108

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +  + LY +      + ELK    A+  EA +GAL++D G+ +  QVF +V +
Sbjct: 1109 MTQYALYGNP-----KAELKTKDRADLLEAFLGALYVDKGL-LHCQVFCNVCF 1155


>gi|322803055|gb|EFZ23143.1| hypothetical protein SINV_00854 [Solenopsis invicta]
          Length = 1447

 Score = 1028 bits (2657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/797 (62%), Positives = 606/797 (76%), Gaps = 26/797 (3%)

Query: 235  NNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDS--YECTQKTR 292
            N C++ +++  K + L+AM +  I+E EKKIWTR++PADLYY  R E++    + T K +
Sbjct: 268  NYCATSKDIRRKLSELSAMGSKGILESEKKIWTRTSPADLYYV-RDENNPKIMKSTAKLQ 326

Query: 293  TICDEFESVIQNFVSVKES-KPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSES 351
             +C  F++V+ N  +   + +P ++            RK   R C H        S + S
Sbjct: 327  ELCLTFDTVLINRAAAARALQPPYEPPP---------RKTRARLCRH-------KSEACS 370

Query: 352  SSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIR 411
            SS S S     E+D  M EL  K+ HP RLHPE+WFND GEMNDGPLCRCS+KSRRSGIR
Sbjct: 371  SSSSDSENSMDEDDRTMEELMAKKQHPQRLHPEMWFNDPGEMNDGPLCRCSAKSRRSGIR 430

Query: 412  HNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFS 471
            H IYAGE     C+ +TNNADKL+HYR+T+SPPTNFL   PT+I+HD  EFIFEGFS+ S
Sbjct: 431  HGIYAGEGAINKCDLNTNNADKLFHYRITISPPTNFLTKTPTIIKHDEHEFIFEGFSMLS 490

Query: 472  HHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSAN 531
            H PL KLPTCKVIRFNI+YTI+YIEEK+P  FT+++ +LF  +LF EILELVD DL +A 
Sbjct: 491  HFPLVKLPTCKVIRFNIEYTILYIEEKLPENFTIQELDLFQMFLFKEILELVDFDLHAAQ 550

Query: 532  NKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQ 591
            +K GC QFH MPRFVR+L DNG+E+L M  VL +   S   +I+         +  Y+WQ
Sbjct: 551  DKSGCGQFHFMPRFVRDLTDNGQEILSMNEVLNYLIKSSTLLINPDDLHRLVAMPQYKWQ 610

Query: 592  DFADGVKGMIIVKPGSKPCAMRVDQLDRESE------TNDIYPDAVHFGSRPLQLCFAGS 645
            DFAD VKGM++  PG KPC++RVDQLDR  E      T+  YP+ VHFG RP QL +AG+
Sbjct: 611  DFADEVKGMVVTYPGKKPCSVRVDQLDRNQEDQLSNKTSPAYPEIVHFGIRPPQLSYAGN 670

Query: 646  PDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGF 705
             D+QK W+ YVK RHL+AN  K + EDKR+L AKE +LQE+RT SKMKR VTV +SS GF
Sbjct: 671  ADYQKAWRDYVKFRHLLANMSKPSFEDKRKLEAKENKLQELRTQSKMKRDVTVDVSSDGF 730

Query: 706  YRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFG 765
            YRTGIMCD+VQHAMLIPVL+CHLRFH+SL+ LE  + Y+F+NRYLLQLALTHPSYRENFG
Sbjct: 731  YRTGIMCDIVQHAMLIPVLVCHLRFHKSLDNLERTLGYEFKNRYLLQLALTHPSYRENFG 790

Query: 766  TNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNER 825
            TNPDHARNSL+NCG+RQPEYGDRRIH+ NTRKRGINTLINIMS+ G K  TES+I HNER
Sbjct: 791  TNPDHARNSLTNCGIRQPEYGDRRIHYMNTRKRGINTLINIMSRFGAKTETESSIAHNER 850

Query: 826  LEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHG 885
            LEFLGDAVVEF+TSIHLFH+FP++EEGGLATYRAAIVQNQHLA LAK++ LE++MLYAHG
Sbjct: 851  LEFLGDAVVEFLTSIHLFHMFPELEEGGLATYRAAIVQNQHLAVLAKKLNLEEYMLYAHG 910

Query: 886  SDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPL 945
            SDLCH++EL+HAMANCFEALMG+LFLDGGI+VAD+VF   L+K  E   K W+ YP+HPL
Sbjct: 911  SDLCHDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKGEEDLAKVWVNYPRHPL 970

Query: 946  QEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRL 1005
            QEQEP GDRQW+    LL++L   E S G+ F HIRLLAR FT RS+GYTNLTLGSNQRL
Sbjct: 971  QEQEPTGDRQWIPSFELLQKLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRL 1030

Query: 1006 EFLGDTVLQLITSDYLY 1022
            EFLGDTVLQLI S+YLY
Sbjct: 1031 EFLGDTVLQLIVSEYLY 1047



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 63/113 (55%), Gaps = 7/113 (6%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 1020 TNLTLGSNQRLEFLGDTVLQLIVSEYLYKFFPEHHEGHLSLLRSSLVNNKTQAVVCDDLG 1079

Query: 876  LEDFMLYAHGSDLCHEVELKHA-MANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +  + LY +      + ELK    A+  EA +GAL++D G+     +F  V +
Sbjct: 1080 MTQYALYGNP-----KAELKTKDRADLLEAFLGALYVDKGLKYC-HIFCDVCF 1126


>gi|340711421|ref|XP_003394274.1| PREDICTED: ribonuclease 3-like [Bombus terrestris]
          Length = 1306

 Score = 1026 bits (2652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/894 (58%), Positives = 638/894 (71%), Gaps = 43/894 (4%)

Query: 144  RDDESNQRRNRSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKSRSEVPR 203
            R+  S   +NRS SR +     H  E+S       + NL   RS+    S    +    +
Sbjct: 218  REKYSKHPKNRSVSRER----LHCEEDSDRRSIHRKNNLHTSRSQRSYTSYRSRKRSRSQ 273

Query: 204  QACARRSRSRSR---ILSPKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIE 260
            ++   R+ S +    I   +   E L  L+K+R + C++ ++M  K + L+AM  + I++
Sbjct: 274  ESYTSRTASPNNNPPINRDRTERELL--LEKYRQDYCATSKDMERKMDELSAMGPEGIMK 331

Query: 261  EEKKIWTRSAPADLYYTKRTEDDS-YECTQKTRTICDEFESVIQNFVSVKES-KPQFDYT 318
              +K+WTR+APADLYY +   +      T K   +C+ F+ V+ N  +   + +P ++  
Sbjct: 332  NARKVWTRTAPADLYYNRDESNPKIMRGTPKLHELCELFKKVLLNRAAAARALQPPYEPP 391

Query: 319  ANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHP 378
                      RK   R C H        S + SSS S S     E+D  M EL  K+ HP
Sbjct: 392  P---------RKTRARLCRH-------KSEACSSSSSDSDSSMDEDDRTMEELMAKKQHP 435

Query: 379  DRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYR 438
             RLHPE+WFND GEMNDGPLCRCS+KSRRSGIRH IYAGE     C+ +TNNADKLYHYR
Sbjct: 436  QRLHPEMWFNDPGEMNDGPLCRCSAKSRRSGIRHGIYAGEGAINKCDLNTNNADKLYHYR 495

Query: 439  VTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEK 498
            +T+SPPTNFL   PT+I+HD  EFIFEGFS+ SH PL KLPTCKVIRFNI+YTI+YI+EK
Sbjct: 496  ITISPPTNFLTKTPTIIKHDEHEFIFEGFSMLSHFPLVKLPTCKVIRFNIEYTILYIDEK 555

Query: 499  VPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLP 558
            +P  F +++ + F  YLF EILEL D DL++A NK GC QFH MPRFVR+L DNG+E+L 
Sbjct: 556  LPENFMIEELDYFQTYLFKEILELTDFDLQAAQNKSGCGQFHFMPRFVRDLADNGQEILS 615

Query: 559  MYRVLEFFTSSFVPVISEKLAKSKDDLS------TYEWQDFADGVKGMIIVKPGSKPCAM 612
            M  VL +       + S KL    DDL        Y+WQ+FAD VKGMI+  PG KPC++
Sbjct: 616  MNEVLNYL------IKSSKLLIDPDDLPRLVEMPQYKWQNFADEVKGMIVTYPGKKPCSV 669

Query: 613  RVDQLDRESETND----IYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKR 668
            RVDQLDR           YP+ VHFG RP QL +AG+ D+QK W+ YVK RHL+AN PK 
Sbjct: 670  RVDQLDRNQADQPPGVIAYPEIVHFGIRPPQLSYAGNADYQKAWRDYVKFRHLLANMPKP 729

Query: 669  TAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHL 728
            + EDKR+L AKE +LQE+RT SKMKR VTV +SS GFYRTGIMCD+VQHAMLIPVL+CHL
Sbjct: 730  SFEDKRKLEAKENKLQELRTQSKMKRDVTVDVSSEGFYRTGIMCDIVQHAMLIPVLVCHL 789

Query: 729  RFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDR 788
            RFH+SL+ LE  + Y+F+NRYLLQLALTHPSYRENFGTNPDHARNSL+NCG+RQPEYGDR
Sbjct: 790  RFHKSLDNLERTLGYEFKNRYLLQLALTHPSYRENFGTNPDHARNSLTNCGIRQPEYGDR 849

Query: 789  RIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPD 848
            RIH+ NTRKRGINTLINIMS+ G +  TES+I HNERLEFLGDAVVEF+TSIHLFH+FPD
Sbjct: 850  RIHYMNTRKRGINTLINIMSRFGARTETESSIAHNERLEFLGDAVVEFLTSIHLFHMFPD 909

Query: 849  IEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGA 908
            +EEGGLATYRAAIVQNQHLA LAK++ LE++MLYAHGSDLCH++EL+HAMANCFEALMG+
Sbjct: 910  LEEGGLATYRAAIVQNQHLAVLAKKLNLEEYMLYAHGSDLCHDLELRHAMANCFEALMGS 969

Query: 909  LFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQY 968
            LFLDGGI+VAD+VF   L+K  E   K W+ YP+HPLQEQEP GDRQW+    LL++L  
Sbjct: 970  LFLDGGIEVADRVFGETLFKAEEDLGKVWVNYPKHPLQEQEPTGDRQWIPSFELLQKLTK 1029

Query: 969  LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
             E S G++F HIRLLAR FT RS+GYTNLTLGSNQRLEFLGDTVLQLI S+YLY
Sbjct: 1030 FEESIGIVFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLY 1083



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 65/113 (57%), Gaps = 7/113 (6%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 1056 TNLTLGSNQRLEFLGDTVLQLIVSEYLYKYFPEHHEGHLSLLRSSLVNNKTQAVVCDDLG 1115

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +  + LY +      + ELK    A+  EA +GAL++D G++   +VF  V +
Sbjct: 1116 MTQYALYGNP-----KAELKTKDRADLLEAFLGALYVDKGLEFC-RVFCDVCF 1162


>gi|350416128|ref|XP_003490851.1| PREDICTED: ribonuclease 3-like [Bombus impatiens]
          Length = 1306

 Score = 1025 bits (2651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/894 (58%), Positives = 640/894 (71%), Gaps = 43/894 (4%)

Query: 144  RDDESNQRRNRSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKSRSEVPR 203
            R+  S   +NRS SR +     H  E+S       + NL   RS+    S    +    +
Sbjct: 218  REKYSKYPKNRSVSRER----LHCEEDSDRRSIHRKNNLHTSRSQRSYTSYRSRKRSRSQ 273

Query: 204  QACARRSRSRSR---ILSPKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIE 260
            ++ + R+ S +    I   +   E L  L+K+R + C++ +++  K + L+AM  + I+E
Sbjct: 274  ESYSSRTASPNNNPPINRDRTERELL--LEKYRQDYCATSKDIERKMDELSAMGPEGIME 331

Query: 261  EEKKIWTRSAPADLYYTKRTEDDS-YECTQKTRTICDEFESVIQNFVSVKES-KPQFDYT 318
              +K+WTR+APADLYY +   +      T K + +C+ F+ V+ N  +   + +P ++  
Sbjct: 332  NARKVWTRTAPADLYYNRDESNPKIMRGTPKLQELCELFKKVLLNRAAAARALQPPYEPP 391

Query: 319  ANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHP 378
                      RK   R C H        S + SSS S S     E+D  M EL  K+ HP
Sbjct: 392  P---------RKTRARLCRH-------KSEACSSSSSDSDSSMDEDDRTMEELMAKKQHP 435

Query: 379  DRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYR 438
             RLHPE+WFND GEMNDGPLCRCS+KSRRSGIRH IYAGE     C+ +TNNADKLYHYR
Sbjct: 436  QRLHPEMWFNDPGEMNDGPLCRCSAKSRRSGIRHGIYAGEGAINKCDLNTNNADKLYHYR 495

Query: 439  VTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEK 498
            +T+SPPTNFL   PT+I+HD  EFIFEGFS+ SH PL KLPTCKVIRFNI+YTI+YI+EK
Sbjct: 496  ITISPPTNFLTKTPTIIKHDEHEFIFEGFSMLSHFPLVKLPTCKVIRFNIEYTILYIDEK 555

Query: 499  VPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLP 558
            +P  F +++ + F  YLF EILEL D DL++A NK GC QFH MPRFVR+L DNG+E+L 
Sbjct: 556  LPENFIIEELDYFQTYLFKEILELTDFDLQAAQNKSGCGQFHFMPRFVRDLADNGQEILS 615

Query: 559  MYRVLEFFTSSFVPVISEKLAKSKDDLS------TYEWQDFADGVKGMIIVKPGSKPCAM 612
            M  VL +       + S KL    DDL        Y+WQ+FAD VKGMI+  PG KPC++
Sbjct: 616  MNEVLNYL------IKSSKLLIDPDDLPRLVEMPQYKWQNFADEVKGMIVTYPGKKPCSV 669

Query: 613  RVDQLDRESETND----IYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKR 668
            RVDQLDR           YP+ VHFG RP QL +AG+ D+QK W+ YVK RHL+AN PK 
Sbjct: 670  RVDQLDRNQVDQPPGVIAYPEIVHFGIRPPQLSYAGNADYQKAWRDYVKFRHLLANMPKP 729

Query: 669  TAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHL 728
            + EDKR+L AKE +LQE+RT SKMKR VTV +SS GFYRTGIMCD+VQHAMLIPVL+CHL
Sbjct: 730  SFEDKRKLEAKENKLQELRTQSKMKRDVTVDVSSEGFYRTGIMCDIVQHAMLIPVLVCHL 789

Query: 729  RFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDR 788
            RFH+SL+ LE  + Y+F+NRYLLQLALTHPSYRENFGTNPDHARNSL+NCG+RQPEYGDR
Sbjct: 790  RFHKSLDNLECTLGYEFRNRYLLQLALTHPSYRENFGTNPDHARNSLTNCGIRQPEYGDR 849

Query: 789  RIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPD 848
            RIH+ NTRKRGINTLINIMS+ G +  TES+I HNERLEFLGDAVVEF+TSIHLFH+FPD
Sbjct: 850  RIHYMNTRKRGINTLINIMSRFGARTETESSIAHNERLEFLGDAVVEFLTSIHLFHMFPD 909

Query: 849  IEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGA 908
            +EEGGLATYRAAIVQNQHLA LAK++ LE++MLYAHGSDLCH++EL+HAMANCFEALMG+
Sbjct: 910  LEEGGLATYRAAIVQNQHLAVLAKKLNLEEYMLYAHGSDLCHDLELRHAMANCFEALMGS 969

Query: 909  LFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQY 968
            LFLDGGI+VAD+VF   L+K  E   K W+ YP+HPLQEQEP GDRQW+    LL++L  
Sbjct: 970  LFLDGGIEVADRVFGETLFKTEEDLGKVWVNYPKHPLQEQEPTGDRQWIPSFELLQKLTK 1029

Query: 969  LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
             E S G++F HIRLLAR FT RS+GYTNLTLGSNQRLEFLGDTVLQLI S+YLY
Sbjct: 1030 FEESIGIVFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLY 1083



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 65/113 (57%), Gaps = 7/113 (6%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 1056 TNLTLGSNQRLEFLGDTVLQLIVSEYLYKYFPEHHEGHLSLLRSSLVNNKTQAVVCDDLG 1115

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +  + LY +      + ELK    A+  EA +GAL++D G++   +VF  V +
Sbjct: 1116 MTQYALYGNP-----KAELKTKDRADLLEAFLGALYVDKGLEFC-RVFCDVCF 1162


>gi|321475336|gb|EFX86299.1| hypothetical protein DAPPUDRAFT_442 [Daphnia pulex]
          Length = 939

 Score = 1022 bits (2643), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/763 (64%), Positives = 597/763 (78%), Gaps = 10/763 (1%)

Query: 264  KIWTRSAPADLYYTKRTEDDSY-ECTQKTRTICDEFE-SVIQNFVSVKESKPQFDYTANR 321
            K WTR APADLYY +  ++      T K +   D+F   +++     +  +P+FDY    
Sbjct: 1    KTWTRCAPADLYYARDLDNPKLMRGTDKLKATIDQFRIKLLERGDKARTMQPKFDYPP-- 58

Query: 322  KKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRL 381
                R  R+   +    C      +  S+SS+  SS EE+ E D  + EL+ K+ HP RL
Sbjct: 59   ----RKTRRHSTQCGGSCKDKSKKTCESDSSTSDSSSEEEDEVDLVLQELERKKQHPSRL 114

Query: 382  HPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTV 441
            HPELWFND GEMNDGPLCRCS K+RR+GIRH IYAGE     C+ ++NN D L+HYRVT+
Sbjct: 115  HPELWFNDPGEMNDGPLCRCSFKARRTGIRHGIYAGEKSSMICDRNSNNGDILHHYRVTI 174

Query: 442  SPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPN 501
            SPPTNFL+ +PTVI HD  EFIFEGFSL SH+PL+K+PTCKVIRFNI+YTIVYIEEKVP+
Sbjct: 175  SPPTNFLLKRPTVIHHDGHEFIFEGFSLLSHYPLDKVPTCKVIRFNIEYTIVYIEEKVPD 234

Query: 502  GFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYR 561
             FT+++ ELF +YLFHE+LELVD +L +A + +GCPQFHI+PRFVR+L D+GKE+L M +
Sbjct: 235  NFTIQELELFSHYLFHELLELVDFNLHAAGDMNGCPQFHILPRFVRDLPDHGKEMLSMNQ 294

Query: 562  VLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRES 621
            VL++     VPVI E     +  L  ++WQ+ AD  KGMI+ KPGSKPC++RVDQLDR+ 
Sbjct: 295  VLQYLIQQNVPVIDETELGYQLKLPQHDWQNMADFTKGMIVTKPGSKPCSLRVDQLDRDQ 354

Query: 622  ETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAK 679
               D+  YP+ VHFG RP QL +AG+P++QK W+ YVK RHL+AN PK + EDKR+L AK
Sbjct: 355  LRMDVISYPEIVHFGIRPPQLSYAGNPEYQKAWRDYVKFRHLLANMPKPSFEDKRKLEAK 414

Query: 680  EQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLED 739
            E RLQEMR  + MKR VTVA+SS GFYRTGIMCD+VQH ML+PVLI HLRFH+SL+VLED
Sbjct: 415  ENRLQEMRLQNNMKRDVTVAVSSEGFYRTGIMCDVVQHGMLLPVLITHLRFHKSLDVLED 474

Query: 740  RIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRG 799
            RI+Y+F+NRYLLQLALTHPSYRENFGTNPDHARNSL+NCG+RQPEYGDRRIH+ NTRKRG
Sbjct: 475  RIKYRFKNRYLLQLALTHPSYRENFGTNPDHARNSLTNCGIRQPEYGDRRIHYMNTRKRG 534

Query: 800  INTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRA 859
            INTLINIMS+LG+K  TES+ITHNERLEFLGDAVVEF+ SIHL+H+FPD+EEGGLATYRA
Sbjct: 535  INTLINIMSRLGKKQETESSITHNERLEFLGDAVVEFLASIHLYHMFPDLEEGGLATYRA 594

Query: 860  AIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVAD 919
            AIVQNQHLA LAK + L+ FMLYAHGSDLCH++EL+HAMANCFEALMGALFLDGGI+VAD
Sbjct: 595  AIVQNQHLAQLAKNLQLDQFMLYAHGSDLCHDLELRHAMANCFEALMGALFLDGGINVAD 654

Query: 920  QVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNH 979
            +VFS+ L+ + +     W+ YP HPLQEQE  GDR+W+   PLL+++   E S G+ F H
Sbjct: 655  RVFSNTLFMNEKDLLDVWVNYPSHPLQEQELGGDRKWIASFPLLQKMVEFEESIGIKFTH 714

Query: 980  IRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            IRLLAR FT RS+G+ NLTLGSNQRLEFLGDTVLQLI S+YLY
Sbjct: 715  IRLLARAFTDRSIGFNNLTLGSNQRLEFLGDTVLQLIASEYLY 757



 Score = 66.2 bits (160), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 7/106 (6%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G+ ++ LY
Sbjct: 737 NQRLEFLGDTVLQLIASEYLYKFFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTNYALY 796

Query: 883 AHGSDLCHEVELKHA-MANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +       + ELK    A+  EA +GAL++D G++   Q F  V +
Sbjct: 797 SSP-----KAELKTKDRADLLEAFLGALYVDKGLEDC-QTFCQVCF 836


>gi|383848560|ref|XP_003699917.1| PREDICTED: ribonuclease 3-like [Megachile rotundata]
          Length = 1286

 Score = 1020 bits (2637), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/877 (58%), Positives = 630/877 (71%), Gaps = 48/877 (5%)

Query: 157  SRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKSRSEVPRQACARRSRSRSRI 216
            SRS +  +S+  E+S+   +    N    RS+    S    +    +++ + R+ S +  
Sbjct: 224  SRSSSKDHSYNGEDSERRSSSRRNNSYTSRSQRSHTSYRSRKRSRSQESYSSRTNSPNNN 283

Query: 217  LSPKRS-GEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLY 275
            L  KR   E    L+K+R + C++ ++M  K + L+AM  + I+E  +K+WTR+APADLY
Sbjct: 284  LPAKRDPTERELLLEKYRQDYCATSKDMERKMDELSAMGPEGIMENARKVWTRTAPADLY 343

Query: 276  YTKRTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRK 335
            Y +   D++     + R                +  +P ++            RK   R 
Sbjct: 344  YVR---DENNLKLMRDRA------------TGARALQPPYEPPP---------RKTRARL 379

Query: 336  CSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMND 395
            C H        S + SSS S S     E+D  M EL  K+ HP RLHPE+WFND GEMND
Sbjct: 380  CRH-------KSEACSSSSSDSDSSMDEDDRTMEELMAKKQHPQRLHPEMWFNDPGEMND 432

Query: 396  GPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVI 455
            GPLCRCS+KSRRSGIRH IYAGE     C+ ++NNADKLYHYR+T+SPPTNFL   PT+I
Sbjct: 433  GPLCRCSAKSRRSGIRHGIYAGEGAINKCDLNSNNADKLYHYRITISPPTNFLTKTPTII 492

Query: 456  EHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYL 515
            +HD  EFIFEGFS+ SH PL KLPTCKVIRFNI+YTI+YI+EK+P  FT+++ + F  YL
Sbjct: 493  KHDEHEFIFEGFSMLSHFPLVKLPTCKVIRFNIEYTILYIDEKLPENFTIRELDYFQTYL 552

Query: 516  FHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVIS 575
            F E+LELVD DL++A +K GC QFH MPRFVR+L DNG+E+L M  VL +       + S
Sbjct: 553  FKEVLELVDFDLQAAQDKSGCGQFHFMPRFVRDLADNGQEILSMNEVLNYL------IKS 606

Query: 576  EKLAKSKDDL------STYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETND---- 625
             KL    DDL        Y+WQ+FAD VKGMI+  PG KPC++RVDQLDR          
Sbjct: 607  SKLLIDPDDLPRLVEMPQYKWQNFADEVKGMIVTYPGKKPCSVRVDQLDRNQADQPPGIV 666

Query: 626  IYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQE 685
             YP+ VHFG RP QL +AG+ D+QK W+ YVK RHL+AN PK + EDKR+L AKE +LQE
Sbjct: 667  AYPEIVHFGIRPPQLSYAGNADYQKAWRDYVKFRHLLANMPKPSFEDKRKLEAKENKLQE 726

Query: 686  MRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKF 745
            +RT SKMKR VTV +SS GFYRTGIMCD+VQHAMLIPVL+CHLRFH+SL+ LE  + Y+F
Sbjct: 727  LRTQSKMKRDVTVDVSSEGFYRTGIMCDIVQHAMLIPVLVCHLRFHKSLDNLERTLGYEF 786

Query: 746  QNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLIN 805
            +NRYLLQLALTHPSYRENFGTNPDHARNSL+NCG+RQPEYGDRRIH+ NTRKRGINTLIN
Sbjct: 787  KNRYLLQLALTHPSYRENFGTNPDHARNSLTNCGIRQPEYGDRRIHYMNTRKRGINTLIN 846

Query: 806  IMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQ 865
            IMS+ G +  TES+I HNERLEFLGDAVVEF+TSIHLFH+FPD+EEGGLATYRAAIVQNQ
Sbjct: 847  IMSRFGARTETESSIAHNERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQ 906

Query: 866  HLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSV 925
            HLA LAK++ LE++MLYAHGSDLCH++EL+HAMANCFEALMG+LFLDGGI+VAD+VF   
Sbjct: 907  HLAVLAKKLNLEEYMLYAHGSDLCHDLELRHAMANCFEALMGSLFLDGGIEVADRVFGET 966

Query: 926  LYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLAR 985
            L+KD +   K W+ YP+HPLQEQEP GDRQW+    LL++L   E S G+ F HIRLLAR
Sbjct: 967  LFKDEDDLAKVWVNYPKHPLQEQEPTGDRQWIPSFELLQKLTKFEESIGIEFTHIRLLAR 1026

Query: 986  VFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
             FT RS+GYTNLTLGSNQRLEFLGDTVLQLI S+YLY
Sbjct: 1027 AFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLY 1063



 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 64/113 (56%), Gaps = 7/113 (6%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 1036 TNLTLGSNQRLEFLGDTVLQLIVSEYLYKYFPEHHEGHLSLLRSSLVNNKTQAVVCDDLG 1095

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +  + LY +      + ELK    A+  EA +GAL++D G++    VF  V +
Sbjct: 1096 MTQYALYGNP-----KAELKTKDRADLLEAFLGALYVDKGLEYC-HVFCDVCF 1142


>gi|380030082|ref|XP_003698687.1| PREDICTED: ribonuclease 3-like [Apis florea]
          Length = 1290

 Score = 1019 bits (2634), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/897 (57%), Positives = 632/897 (70%), Gaps = 66/897 (7%)

Query: 144  RDDESNQRRNRSSSRSK-------NNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESK 196
            RD  S   +NRS SR +       +   S+R  NS +S ++      R R RS+S+    
Sbjct: 219  RDKYSKYVKNRSISRERLHYEEDSDRRSSYRRNNSYASHSQRSYTSYRSRKRSRSQESYS 278

Query: 197  SRSEVPRQ-ACARRSRSRSRILSPKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEA 255
            SR+  P       R R+   +L           L+K+R + C++ ++M  K + L+AM  
Sbjct: 279  SRTISPNNNPVINRDRTERELL-----------LEKYRQDYCATSKDMERKMDELSAMGP 327

Query: 256  DQIIEEEKKIWTRSAPADLYYTKRTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQF 315
            + I+E  +K+WTR+APADLYY++                 DE    I    +      Q 
Sbjct: 328  EGIMENARKVWTRTAPADLYYSR-----------------DENNPKIMRDRAAAARALQP 370

Query: 316  DYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQ 375
             Y    +K   T  +  K K   C+S+ + S  S    D +           M EL  K+
Sbjct: 371  PYEPPPRK---TRARLCKHKSEACSSSSSDSDSSMDEDDRT-----------MEELMAKK 416

Query: 376  NHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLY 435
             HP RLHPE+WFND GEMNDGPLCRCS+KSRRSGIRH IYAGE     C+ ++NNADKLY
Sbjct: 417  QHPQRLHPEMWFNDPGEMNDGPLCRCSAKSRRSGIRHGIYAGEGAINKCDLNSNNADKLY 476

Query: 436  HYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYI 495
            HYR+T+SPPTNFL   PT+I+HD  EFIFEGFS+ SH PL KLPTCKVIRFNI+YTI+YI
Sbjct: 477  HYRITISPPTNFLTKTPTIIKHDEHEFIFEGFSMLSHFPLVKLPTCKVIRFNIEYTILYI 536

Query: 496  EEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKE 555
            +EK+P  F +++ + F  YLF E+LEL+D DL++A NK GC QFH MPRFVR+L DNG+E
Sbjct: 537  DEKLPENFIIRELDFFQTYLFKEVLELIDFDLQAAQNKSGCGQFHFMPRFVRDLADNGQE 596

Query: 556  LLPMYRVLEFFTSSFVPVISEKLAKSKDDLS------TYEWQDFADGVKGMIIVKPGSKP 609
            +L M  VL +       + S KL    DDL        Y+WQ+FAD VKGMI+  PG KP
Sbjct: 597  ILSMNEVLNYL------IKSSKLLIDPDDLPRLVEMPQYKWQNFADEVKGMIVTFPGKKP 650

Query: 610  CAMRVDQLDRESETND----IYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANK 665
            C++RVDQLDR           YP+ VHFG RP QL +AG+ D+QK W+ YVK RHL+AN 
Sbjct: 651  CSVRVDQLDRNQTDQPPGVIAYPEIVHFGIRPPQLSYAGNADYQKAWRDYVKFRHLLANM 710

Query: 666  PKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLI 725
            PK + EDKR+L AKE +LQE+RT SKMKR VTV +SS GFYRTGIMCD+VQHAMLIPVL+
Sbjct: 711  PKPSFEDKRKLEAKENKLQELRTQSKMKRDVTVDVSSEGFYRTGIMCDIVQHAMLIPVLV 770

Query: 726  CHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEY 785
            CHLRFH+SL+ LE  + Y+F+NRYLLQLALTHPSYRENFGTNPDHARNSL+NCG+RQPEY
Sbjct: 771  CHLRFHKSLDNLERTLGYEFKNRYLLQLALTHPSYRENFGTNPDHARNSLTNCGIRQPEY 830

Query: 786  GDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHV 845
            GDRRIH+ NTRKRGINTLINIMS+ G +  TES+I HNERLEFLGDAVVEF+TSIHLFH+
Sbjct: 831  GDRRIHYMNTRKRGINTLINIMSRFGARTETESSIAHNERLEFLGDAVVEFLTSIHLFHM 890

Query: 846  FPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEAL 905
            FPD+EEGGLATYRAAIVQNQHLA LAK++ LE++MLYAHGSDLCH++EL+HAMANCFEAL
Sbjct: 891  FPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEEYMLYAHGSDLCHDLELRHAMANCFEAL 950

Query: 906  MGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQ 965
            MG+LFLDGGI+VAD+VF   L+KD E   K W+ YP+HPLQEQEP GDRQW+    LL++
Sbjct: 951  MGSLFLDGGIEVADRVFGETLFKDEEDLAKVWVNYPKHPLQEQEPTGDRQWIPSFELLQK 1010

Query: 966  LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            L   E S G+ F HIRLLAR FT RS+GYTNLTLGSNQRLEFLGDTVLQLI S+YLY
Sbjct: 1011 LTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLY 1067



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 65/113 (57%), Gaps = 7/113 (6%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 1040 TNLTLGSNQRLEFLGDTVLQLIVSEYLYKYFPEHHEGHLSLLRSSLVNNKTQAVVCDDLG 1099

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +  + LY +      + ELK    A+  EA +GAL++D G++   +VF  V +
Sbjct: 1100 MTQYALYGNP-----KAELKTKDRADLLEAFLGALYVDKGLEYC-RVFCDVCF 1146


>gi|242021933|ref|XP_002431397.1| ribonuclease III, putative [Pediculus humanus corporis]
 gi|212516673|gb|EEB18659.1| ribonuclease III, putative [Pediculus humanus corporis]
          Length = 1410

 Score = 1018 bits (2633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/853 (58%), Positives = 625/853 (73%), Gaps = 38/853 (4%)

Query: 190  KSRSESKSRSEVPRQA-CARRSRSRSRILSPKRSGEALSNLDKWRMNNCSSEREMTEKFN 248
            KSRS    R+   R+    +R  + S +L      + L  + +WRMN C ++ EM ++  
Sbjct: 373  KSRSPPSYRTYKRRETYFDKRESNNSFVLKSDSYRQKL--IKRWRMNYCENQDEMQKRLQ 430

Query: 249  TLAAMEADQIIEEEKKIWTRSAPADLYYTKRTED-DSYECTQKTRTICDEFESVIQNFVS 307
             ++ M  ++I+EEE K+W RSAPA  YY +   D    + T K   +C+ F         
Sbjct: 431  EISQMNPEEILEEENKVWIRSAPAYCYYERDPNDLRRMKPTPKLDELCERF--------- 481

Query: 308  VKESKPQFDYTANRKKIKRTNRKK----IKRKCSHCASNPTVSSGSESSSDSSSGEEDAE 363
                  +++     K+I+     K    IK K   C     + S S+ S   +S E D  
Sbjct: 482  ------KYELVDRGKRIRDGQTLKCPAPIKPKQKLCKHKSQICSSSDDSESENSDESDDV 535

Query: 364  EDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAF 423
             D  M ELQ KQ HP RLH ELW+ND GEMNDGPLCRCS+K+RRSGIRH  YAGE+++  
Sbjct: 536  ND-MMEELQRKQKHPYRLHSELWYNDPGEMNDGPLCRCSAKARRSGIRHGFYAGENQKIC 594

Query: 424  CNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKV 483
            C+  +NNA  LY YR+T+SPPTNFL   PT+I +D+ EFIFEGFSL SH+P++KLPTCKV
Sbjct: 595  CDVKSNNAGNLYCYRITISPPTNFLTRTPTIINYDDHEFIFEGFSLISHYPIQKLPTCKV 654

Query: 484  IRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMP 543
            IRFNI+Y I+Y+EEK+P  F++ + +LF+ Y+F EILELVD DLK++++ + CPQFH MP
Sbjct: 655  IRFNIEYIILYVEEKLPENFSILELDLFYEYVFKEILELVDFDLKNSSHPENCPQFHFMP 714

Query: 544  RFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIV 603
            RFVREL DNG+ELLPM  VL++  SS   +I +    S   +++ EWQDFAD VKGM++ 
Sbjct: 715  RFVRELPDNGRELLPMCEVLKYLLSSNKKLIEDGTLDSLHKMTSSEWQDFADLVKGMVVT 774

Query: 604  KPGSKPCAMRVDQLDRESET--------------NDIYPDAVHFGSRPLQLCFAGSPDFQ 649
             PG KPC++RVDQLDR+++               N  YP+ VHFG RP QL +AG+P++Q
Sbjct: 775  NPGMKPCSLRVDQLDRDTDESVKKKENAKSCSMENYYYPEIVHFGIRPPQLSYAGNPEYQ 834

Query: 650  KLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTG 709
            + W+ YVK RHL+AN PK TAEDK++LAAKE  L  MR +SKMKR VTV +SS+GFY+TG
Sbjct: 835  RAWRKYVKFRHLLANMPKPTAEDKQKLAAKENSLHSMRAHSKMKRDVTVTVSSKGFYQTG 894

Query: 710  IMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPD 769
            +MCD+VQHAMLIPVL+CHLRFHRSL VLE++I YKF+N++LLQLALTHPSYRENFGTN D
Sbjct: 895  LMCDVVQHAMLIPVLVCHLRFHRSLVVLEEKINYKFKNKFLLQLALTHPSYRENFGTNSD 954

Query: 770  HARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFL 829
            HARNSL+NCG+RQP+YGDRRIH+ NTRKRGINTLI+IMS+ GRK  T+SNI HNERLEFL
Sbjct: 955  HARNSLTNCGIRQPQYGDRRIHYMNTRKRGINTLISIMSRFGRKNETQSNIYHNERLEFL 1014

Query: 830  GDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 889
            GDAVVEFITSIHLFH+F D+EEGGLATYRAA+VQNQHL+ LAK++ L++FMLYAHGSDLC
Sbjct: 1015 GDAVVEFITSIHLFHIFRDLEEGGLATYRAALVQNQHLSVLAKKLNLDEFMLYAHGSDLC 1074

Query: 890  HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 949
            H++ELKHAMANCFEALMGALFLDGGI+ AD+VF   LY D+E     W  YP HPLQEQE
Sbjct: 1075 HDLELKHAMANCFEALMGALFLDGGIESADKVFGMTLYGDDEDCSDVWFNYPPHPLQEQE 1134

Query: 950  PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 1009
            P GDR+W+   PLL+ L   E ++G+ F HIRLLAR FT RS+GYTNLTLGSNQRLEFLG
Sbjct: 1135 PLGDRKWISHFPLLQNLTKFEEATGIEFKHIRLLARAFTDRSVGYTNLTLGSNQRLEFLG 1194

Query: 1010 DTVLQLITSDYLY 1022
            D+VLQLI S+YLY
Sbjct: 1195 DSVLQLIASEYLY 1207



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 69/113 (61%), Gaps = 7/113 (6%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD+V++ I S +L+  FP+  EG L+  R+++V N+  + +   +G
Sbjct: 1180 TNLTLGSNQRLEFLGDSVLQLIASEYLYKYFPEHHEGHLSLLRSSLVNNKTQSVVCDDLG 1239

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +  + +YA+      +VELK    A+  EA +GAL++D G+D+  +VF  V +
Sbjct: 1240 MTQYAVYANP-----KVELKVKDRADLLEAFLGALYVDNGLDIC-RVFCDVCF 1286


>gi|328777204|ref|XP_394444.3| PREDICTED: ribonuclease 3 [Apis mellifera]
          Length = 1290

 Score = 1018 bits (2632), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/804 (61%), Positives = 596/804 (74%), Gaps = 47/804 (5%)

Query: 229  LDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDSYECT 288
            L+K+R + C++ ++M  K + L+AM  + I+E  +K+WTR+APADLYYT+          
Sbjct: 301  LEKYRQDYCATSKDMERKMDELSAMGPEGIMENARKVWTRTAPADLYYTR---------- 350

Query: 289  QKTRTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSG 348
                   DE    I    +      Q  Y    +K   T  +  K K   C+S+ + S  
Sbjct: 351  -------DENNPKIMRDRAAAARALQPPYEPPPRK---TRARLCKHKSEACSSSSSDSDS 400

Query: 349  SESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRS 408
            S    D +           M EL  K+ HP RLHPE+WFND GEMNDGPLCRCS+KSRRS
Sbjct: 401  SMDEDDRT-----------MEELMAKKQHPQRLHPEMWFNDPGEMNDGPLCRCSAKSRRS 449

Query: 409  GIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFS 468
            GIRH IYAGE     C+ ++NNADKLYHYR+T+SPPTNFL   PT+I+HD  EFIFEGFS
Sbjct: 450  GIRHGIYAGEGAINKCDLNSNNADKLYHYRITISPPTNFLTKTPTIIKHDEHEFIFEGFS 509

Query: 469  LFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLK 528
            + SH PL KLPTCKVIRFNI+YTI+YI+EK+P  F +++ + F  YLF E+LEL+D DL+
Sbjct: 510  MLSHFPLVKLPTCKVIRFNIEYTILYIDEKLPENFIIRELDFFQTYLFKEVLELIDFDLQ 569

Query: 529  SANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLS-- 586
            +A NK GC QFH MPRFVR+L DNG+E+L M  VL +       + S KL    DDL   
Sbjct: 570  AAQNKSGCGQFHFMPRFVRDLADNGQEILSMNEVLNYL------IKSSKLLIDPDDLPRL 623

Query: 587  ----TYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETND----IYPDAVHFGSRPL 638
                 Y+WQ+FAD VKGMI+  PG KPC++RVDQLDR           YP+ VHFG RP 
Sbjct: 624  VEMPQYKWQNFADEVKGMIVTFPGKKPCSVRVDQLDRNQTDQPPGVIAYPEIVHFGIRPP 683

Query: 639  QLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTV 698
            QL +AG+ D+QK W+ YVK RHL+AN PK + EDKR+L AKE +LQE+RT SKMKR VTV
Sbjct: 684  QLSYAGNADYQKAWRDYVKFRHLLANMPKPSFEDKRKLEAKENKLQELRTQSKMKRDVTV 743

Query: 699  AISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHP 758
             +SS GFYRTGIMCD+VQHAMLIPVL+CHLRFH+SL+ LE  + Y+F+NRYLLQLALTHP
Sbjct: 744  DVSSEGFYRTGIMCDIVQHAMLIPVLVCHLRFHKSLDNLERTLGYEFKNRYLLQLALTHP 803

Query: 759  SYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATES 818
            SYRENFGTNPDHARNSL+NCG+RQPEYGDRRIH+ NTRKRGINTLINIMS+ G +  TES
Sbjct: 804  SYRENFGTNPDHARNSLTNCGIRQPEYGDRRIHYMNTRKRGINTLINIMSRFGARTETES 863

Query: 819  NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
            +I HNERLEFLGDAVVEF+TSIHLFH+FPD+EEGGLATYRAAIVQNQHLA LAK++ LE+
Sbjct: 864  SIAHNERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEE 923

Query: 879  FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWM 938
            +MLYAHGSDLCH++EL+HAMANCFEALMG+LFLDGGI+VAD+VF   L+KD E   K W+
Sbjct: 924  YMLYAHGSDLCHDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKDEEDLAKVWV 983

Query: 939  YYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT 998
             YP+HPLQEQEP GDRQW+    LL++L   E S G+ F HIRLLAR FT RS+GYTNLT
Sbjct: 984  NYPKHPLQEQEPTGDRQWIPSFELLQKLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLT 1043

Query: 999  LGSNQRLEFLGDTVLQLITSDYLY 1022
            LGSNQRLEFLGDTVLQLI S+YLY
Sbjct: 1044 LGSNQRLEFLGDTVLQLIVSEYLY 1067



 Score = 70.5 bits (171), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 65/113 (57%), Gaps = 7/113 (6%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 1040 TNLTLGSNQRLEFLGDTVLQLIVSEYLYKYFPEHHEGHLSLLRSSLVNNKTQAVVCDDLG 1099

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +  + LY +      + ELK    A+  EA +GAL++D G++   +VF  V +
Sbjct: 1100 MTQYALYGNP-----KAELKTKDRADLLEAFLGALYVDKGLEYC-RVFCDVCF 1146


>gi|328723672|ref|XP_003247913.1| PREDICTED: ribonuclease 3-like [Acyrthosiphon pisum]
          Length = 1273

 Score = 1004 bits (2595), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/880 (56%), Positives = 630/880 (71%), Gaps = 63/880 (7%)

Query: 156  SSRSKNNGYSHRSENSKSSPTRTETNLKR--RRSRSKSRSESKSRSEVPRQACARRSRSR 213
            +S+  NNG  + S    S+   T++  KR  R S  KSR+ SK R+        R  ++ 
Sbjct: 192  TSKFLNNGVKNTSRKHSSTSNHTQSVSKRSHRSSSPKSRNISKDRN-------VRSMKTN 244

Query: 214  SRILSPKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPAD 273
              + S     + LSN                        M   QII+ EKK W+RSAP+D
Sbjct: 245  EEMSSEMSEMKKLSN------------------------MSIQQIIDYEKKKWSRSAPSD 280

Query: 274  LYYTKRTEDDSYECTQKTRT---ICDEFESVIQNFVS-VKESKPQFDYTANRKKIKRTNR 329
            +YY K+ +DDS E T   +    ICDEFE+ +   VS + E+KP        +K+    R
Sbjct: 281  IYY-KKPDDDS-EVTFGNKIALDICDEFENTLGKRVSKMNENKP---VHCKPRKVNVNVR 335

Query: 330  KKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFND 389
            K +      C+ N + +S  +   +  +          + EL  K +HPDRLH ELW+N+
Sbjct: 336  KHV------CSGNGSSTSDEDEDDEKENST--------LKELDRKCSHPDRLHSELWYNE 381

Query: 390  KGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLI 449
             GEMNDGP+C+CS KS+RSGIRHNIY GE     C P++NN+DKL+HYR+T++PPTNFL+
Sbjct: 382  FGEMNDGPMCKCSVKSQRSGIRHNIYVGEGPFEPCLPNSNNSDKLFHYRITITPPTNFLL 441

Query: 450  NKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTE 509
              PTVIE +  ++ FEGFSL SH+P+  LPTCKVIRFN  Y I+YIEEK+P+ F VK+ +
Sbjct: 442  KCPTVIECNESKYTFEGFSLLSHYPIPILPTCKVIRFNTNYAILYIEEKIPDNFIVKELQ 501

Query: 510  LFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSS 569
            LF++YLF +ILELVDLDL    NK+GCPQFH MPRFV++L DNGKE+L M  VL++   S
Sbjct: 502  LFYDYLFKDILELVDLDLHGIGNKNGCPQFHFMPRFVKDLSDNGKEVLSMNEVLKYLLKS 561

Query: 570  FVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRES-------E 622
               +  E    +  ++   EWQ+  D  KGMI+  PG+KP ++RVDQLDR+S        
Sbjct: 562  NKLLFEESSLSALQEMPMNEWQNIVDEYKGMIVTNPGTKPYSIRVDQLDRDSVNEATEKN 621

Query: 623  TNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQR 682
             ND YP  VHFG RP QL +AG+PD+QK W+ YVK RHL+AN PK + EDKR+L  KE+ 
Sbjct: 622  VNDGYPVLVHFGIRPPQLSYAGNPDYQKGWRDYVKFRHLLANMPKPSFEDKRKLEIKERA 681

Query: 683  LQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQ 742
            LQEMR+++KMKRGVT A+SS+GF++TG+MCD+VQHAML+PVL+CH RFH+SL  LED I+
Sbjct: 682  LQEMRSHNKMKRGVTAAVSSKGFFKTGLMCDIVQHAMLLPVLVCHFRFHKSLEYLEDTIE 741

Query: 743  YKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINT 802
            YKF+N+YLLQLALTHPSYRENFGTNPDHARN+L+NCG+RQPEYGDRRIH+ NTRKRGINT
Sbjct: 742  YKFKNKYLLQLALTHPSYRENFGTNPDHARNTLTNCGIRQPEYGDRRIHYMNTRKRGINT 801

Query: 803  LINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIV 862
            LINIMS+ G+K   ESNI HNERLEFLGDAVVEF++SIHLF++FPDIEEGGLAT+RAAIV
Sbjct: 802  LINIMSRFGKKSEMESNIMHNERLEFLGDAVVEFVSSIHLFNMFPDIEEGGLATFRAAIV 861

Query: 863  QNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            QNQHLA LAK + L+DFMLYAHGSDLCH+ ELKHAMANCFEALMGALFLDGGI+VAD+VF
Sbjct: 862  QNQHLAVLAKTLKLDDFMLYAHGSDLCHDSELKHAMANCFEALMGALFLDGGIEVADRVF 921

Query: 923  SSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRL 982
                Y+D+      W+ YP+HPLQ+QEP+GDR+W+++ PLL++L   E S G+ F HIRL
Sbjct: 922  GKTFYRDSPEYLDIWVNYPRHPLQQQEPEGDRKWIKKLPLLQKLTNFEDSIGIKFTHIRL 981

Query: 983  LARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            LAR FT RS+G+TNLTLGSNQRLEFLGDTVLQLI SDYLY
Sbjct: 982  LARAFTDRSVGFTNLTLGSNQRLEFLGDTVLQLIASDYLY 1021



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 23/181 (12%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  + +   +G
Sbjct: 994  TNLTLGSNQRLEFLGDTVLQLIASDYLYKYFPEHHEGHLSLLRSSLVNNRTQSVVCDDLG 1053

Query: 876  LEDFMLYAHGSDLCHEVELKHA-MANCFEALMGALFLDGGIDVADQVFSSVLY--KDNEV 932
            +  + LYA+      + ELK    A+  EA +GAL++D G+    Q F +V +  + ++ 
Sbjct: 1054 MVSYALYANP-----KAELKTKDRADLLEAFLGALYIDKGLTFC-QAFCNVCFFPRLHDF 1107

Query: 933  RFKQWMYYPQHPLQE-----QEPDGDRQWVEQSPLLKQLQYL------EYSSGVIFNHIR 981
              KQ    P+  LQ+     +  DG    +   P+ K ++ +      +Y+  V F  +R
Sbjct: 1108 ILKQDWNDPKSKLQQCCLTLRSVDGGEPDI---PVYKVIECMGPTNGRKYTVAVYFKSVR 1164

Query: 982  L 982
            L
Sbjct: 1165 L 1165


>gi|425626944|gb|AFX89030.1| drosha [Mayetiola destructor]
          Length = 1373

 Score =  985 bits (2547), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/805 (59%), Positives = 589/805 (73%), Gaps = 46/805 (5%)

Query: 229  LDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDSYECT 288
            L+KWR N C +  ++  K   +           + + W RS+PADL+Y KRT  +  E T
Sbjct: 289  LEKWRSNFCETSEDIARKLEEMTE-------NTDSECWIRSSPADLFY-KRTSSNEMEGT 340

Query: 289  QKTRTICDEFES-VIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSS 347
             ++ T+C  F+S +I+     + +KP  D    ++K          R C H +      S
Sbjct: 341  SRSETLCTLFDSELIERGQKARITKPAIDQQPKKRK---------HRVCRHKSD---KCS 388

Query: 348  GSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRR 407
             S+SS D  + E+D    ++  EL  K  HP RLH +LW N+ GEMNDGPLCRCS+KSRR
Sbjct: 389  SSDSSDDDFNIEDDCRAMDFFTELTKKIQHPYRLHVDLWHNEPGEMNDGPLCRCSAKSRR 448

Query: 408  SGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGF 467
            SGIRH IY GE     CNP +NNA KLYHY++TVSPPTNFL   PT+I+HD  EF+FEGF
Sbjct: 449  SGIRHGIYPGETGPPKCNPSSNNAGKLYHYKITVSPPTNFLTKTPTMIKHDQHEFLFEGF 508

Query: 468  SLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDL 527
            SL SH P+ +LPTC VIRFNI+Y I+Y EEK+P  FTV++ +LF+NYLF EILE++D  L
Sbjct: 509  SLLSHSPIAELPTCSVIRFNIEYKIMYFEEKMPENFTVRELDLFYNYLFVEILEMLDFSL 568

Query: 528  KSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLST 587
                N D CP FH +PRFVR+L DNGKE+L M  VL +   +  P++SE + ++   L+ 
Sbjct: 569  VPKGNNDACPCFHFLPRFVRDLPDNGKEILAMSEVLRYLLDNSGPLVSETVLENMQTLNQ 628

Query: 588  YEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRE----------SETNDIYPDAVHFGSRP 637
            ++WQD+ D VKGM+++ PG KPC++RVDQLDR            + N I+P  VHFG RP
Sbjct: 629  HDWQDYVDDVKGMVVINPGMKPCSIRVDQLDRNVTDLSECVDPDDPNIIHPIIVHFGVRP 688

Query: 638  LQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVT 697
             QL +AG+P++QK W+ YVK RHLVAN  K + EDKR+L +KE RLQEMRT  +MKR VT
Sbjct: 689  PQLSYAGNPEYQKSWREYVKFRHLVANMSKPSFEDKRKLESKECRLQEMRTQGRMKRNVT 748

Query: 698  VAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTH 757
            VAI S+ FYRTGIMCD+VQHA+LIPVL  HLRFH+SL++LE  I YKF+NRYLLQLALTH
Sbjct: 749  VAIVSKNFYRTGIMCDIVQHALLIPVLTTHLRFHQSLDLLEKNIDYKFKNRYLLQLALTH 808

Query: 758  PSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATE 817
            PSY+EN+GTNPDHARNSL+NCGVRQPEYGDR+IH+ NTRKRGINTLINIMS+ G++  T+
Sbjct: 809  PSYKENYGTNPDHARNSLTNCGVRQPEYGDRKIHYLNTRKRGINTLINIMSRFGKEDETD 868

Query: 818  SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
            SNITHNERLEFLGDAVVEF+TSIHLF +FPD+EEGGLATYRAAIVQNQHLA LAK++ L+
Sbjct: 869  SNITHNERLEFLGDAVVEFLTSIHLFFMFPDLEEGGLATYRAAIVQNQHLAVLAKKLRLD 928

Query: 878  DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQW 937
            +FMLYAHGSDLCHE+EL+HAMANCFEALMGAL LDGGIDVAD++               W
Sbjct: 929  EFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIDVADKI---------------W 973

Query: 938  MYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL 997
            + YP HPLQEQEP GDRQW+E  PLLK L   E S G+ F HIRLLAR FT RS+G+TNL
Sbjct: 974  INYPPHPLQEQEPLGDRQWIESYPLLKDLTKFEESVGISFKHIRLLARAFTDRSIGFTNL 1033

Query: 998  TLGSNQRLEFLGDTVLQLITSDYLY 1022
            TLGSNQRLEFLGDTVLQLI S+YLY
Sbjct: 1034 TLGSNQRLEFLGDTVLQLICSEYLY 1058



 Score = 66.6 bits (161), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 64/113 (56%), Gaps = 6/113 (5%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 1031 TNLTLGSNQRLEFLGDTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLG 1090

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +  + +Y++  +     ELK    A+  EA +G+L++D G+  A+      L+
Sbjct: 1091 MTKYAIYSNPKN-----ELKTKDRADLLEAFLGSLYVDKGLLFAETFCQVCLF 1138


>gi|396941645|gb|ADB65770.2| drosha [Marsupenaeus japonicus]
          Length = 1080

 Score =  982 bits (2538), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/662 (67%), Positives = 542/662 (81%), Gaps = 2/662 (0%)

Query: 363  EEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQA 422
            E D    EL+ K+NHPDRLHPELWFND GEMNDGPLCRCS K++RSGIRH  Y GED   
Sbjct: 217  EMDRIAKELEKKRNHPDRLHPELWFNDPGEMNDGPLCRCSLKAQRSGIRHGYYVGEDSLK 276

Query: 423  FCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCK 482
             C+P TNNAD L+HY +T+SPPTNFLI  PTVI HD+ EFIFEGFSL SH+PLE++PTCK
Sbjct: 277  PCDPWTNNADHLHHYLITISPPTNFLIKTPTVIMHDSHEFIFEGFSLLSHNPLEEVPTCK 336

Query: 483  VIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIM 542
            VIRFNI+YTI+Y++EK+P+ F V++ ++F+ YLF E+LELVDL+L +  + DGCP+FH M
Sbjct: 337  VIRFNIEYTILYLQEKIPDNFCVRELDIFYKYLFTELLELVDLNLHAMGDPDGCPRFHFM 396

Query: 543  PRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMII 602
            PRFVR+L DNGKE+L M  VL +   +  P++  +       +S Y+WQ++AD +KGM++
Sbjct: 397  PRFVRKLADNGKEILSMNEVLTYLLKNSGPLVQPEDLAQLLSMSQYQWQNYADQLKGMVV 456

Query: 603  VKPGSKPCAMRVDQLDRE--SETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRH 660
              PG KPC++RVDQLDR+  SE    YP  VHFG RP QL +AG+P++QK W+ YVK RH
Sbjct: 457  TCPGMKPCSIRVDQLDRDQVSEETINYPVIVHFGIRPPQLSYAGNPEYQKAWREYVKFRH 516

Query: 661  LVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAML 720
            L+AN PK + EDKRRL AKE RLQEMR  SKMKR VTVA+S++GFYR+GIMCD+VQHAML
Sbjct: 517  LLANMPKPSFEDKRRLEAKENRLQEMRMTSKMKRDVTVAVSAQGFYRSGIMCDVVQHAML 576

Query: 721  IPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGV 780
            +PVL+CHLRFH SL VLE+RIQYKF+ R+LLQLALTHPSYRENFGTNPDHARNSL+NCG+
Sbjct: 577  LPVLVCHLRFHCSLEVLEERIQYKFRTRFLLQLALTHPSYRENFGTNPDHARNSLTNCGI 636

Query: 781  RQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSI 840
            RQPEYGDRRIH+ NTRKRGINTLINIMS+ GR + TES ITHNERLEFLGDAVVEF+TSI
Sbjct: 637  RQPEYGDRRIHYMNTRKRGINTLINIMSRFGRNLETESKITHNERLEFLGDAVVEFLTSI 696

Query: 841  HLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMAN 900
            HLFH+FP +EEGGLATYRAAIVQNQHLA LA+++GL+ FMLYAHGSDLCH+ EL+HAMAN
Sbjct: 697  HLFHLFPSLEEGGLATYRAAIVQNQHLAVLAEKLGLDQFMLYAHGSDLCHDFELRHAMAN 756

Query: 901  CFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQS 960
            CFEALMGA+FLD GI+ AD V SS L++  ++    W+ YP HP+Q QEP GDR+W++  
Sbjct: 757  CFEALMGAIFLDTGIEDADSVLSSTLFQGEDLLHSIWVNYPPHPIQMQEPQGDRKWIKSF 816

Query: 961  PLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDY 1020
            P+L  L   E S GV FNHIRLLAR FT RS+G+ NLTLGSNQRLEFLGDTVLQL+ S+Y
Sbjct: 817  PILTNLSKFEESIGVHFNHIRLLARAFTDRSIGFNNLTLGSNQRLEFLGDTVLQLVASEY 876

Query: 1021 LY 1022
            LY
Sbjct: 877  LY 878



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 64/105 (60%), Gaps = 5/105 (4%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           N+RLEFLGD V++ + S +L+  FP+  EG L+  R+++V N+  A +   +G+  + +Y
Sbjct: 858 NQRLEFLGDTVLQLVASEYLYKYFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTAYAMY 917

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +H   L  E++ K   A+  EA +GAL++D G+D   + F  V +
Sbjct: 918 SH---LKTELKTKDR-ADLLEAFLGALYIDRGLDYC-RAFCQVCF 957


>gi|157119283|ref|XP_001653338.1| ribonuclease iii [Aedes aegypti]
 gi|108875392|gb|EAT39617.1| AAEL008592-PA [Aedes aegypti]
          Length = 1374

 Score =  974 bits (2517), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/849 (57%), Positives = 606/849 (71%), Gaps = 40/849 (4%)

Query: 187  SRSKSRSESKSRSEVPRQACARRSRSRSRILSPKRSGEALSNLDKWRMNNCSSEREMTEK 246
            +RS +R+E   R++        R    SR    K   E  + L KWR N C +  ++ +K
Sbjct: 180  TRSSTRTEHTRRTDSASGDSKERPPRVSRF---KVDSEREAILSKWRKNFCETPEDIRKK 236

Query: 247  FNTLAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDSYECTQKTRTICDEF-ESVIQNF 305
               L         +EEK  W RS+PADL+Y +R  D   E T +   +C  F E +I+  
Sbjct: 237  LAELTN-------DEEKTSWVRSSPADLFY-RRISDKVVEGTPRLDALCALFDEELIRRS 288

Query: 306  VSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEED 365
              V+  +  +     + K++    K    KCS              SSDSS  E + EE+
Sbjct: 289  DRVRAKQAPYQPPPRKHKVRICRHKN--DKCS--------------SSDSSDDELNFEEE 332

Query: 366  NWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCN 425
              M EL +K  HP RLH +LW ND GEMNDGPLCRCS++SRR+GIRH  Y GE     C 
Sbjct: 333  CSMEELTVKIKHPYRLHADLWHNDPGEMNDGPLCRCSARSRRTGIRHGKYPGEVGFGKCI 392

Query: 426  PDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIR 485
             ++NNADKLYHYR+T+SPPTNFL   PT+I+HD  EF+FEGFSL SH P+ +LPTCKVIR
Sbjct: 393  SNSNNADKLYHYRITISPPTNFLTKTPTIIKHDQHEFLFEGFSLLSHQPIGELPTCKVIR 452

Query: 486  FNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDL--KSANNKDGCPQFHIMP 543
            FNI+YTI+YIEE++P  FT+++ +LF  ++F E+LEL+D  +    A  ++ CP +H +P
Sbjct: 453  FNIEYTILYIEEQMPENFTIRELDLFEQFMFKELLELIDFTVYPSGAGPENSCPCYHFLP 512

Query: 544  RFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIV 603
            RFVR+L DNGKE+L M  VL +   +  P+++  + K  +DLS  EWQD+ D VKGM++ 
Sbjct: 513  RFVRDLPDNGKEVLAMGEVLRYLLDNSGPLVAPDILKEMNDLSQIEWQDYVDYVKGMVVT 572

Query: 604  KPGSKPCAMRVDQLDRE----------SETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWK 653
             PG KPC++RVDQLDR            E  +++P  VHFG RP QL +AG+P++QK W+
Sbjct: 573  NPGMKPCSVRVDQLDRNVTDVPKANLTDEEGNVHPVIVHFGIRPPQLSYAGNPEYQKAWR 632

Query: 654  GYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCD 713
             YVK RHL+AN  K + EDKR+L AKE RL EMRT  +MKR +TVA+S++GF+RTGIMCD
Sbjct: 633  EYVKFRHLIANMSKPSFEDKRKLEAKENRLLEMRTQGRMKRNITVAVSAKGFHRTGIMCD 692

Query: 714  MVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARN 773
            MVQHAM+IPVL  HLRFHR+L+VLE+ I YKF NRY LQLALTHPSY+ENFGTNPDHARN
Sbjct: 693  MVQHAMVIPVLTGHLRFHRALDVLEEHIDYKFINRYTLQLALTHPSYKENFGTNPDHARN 752

Query: 774  SLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAV 833
            SL+NCG+RQPEYGDR+IHF NTRKRGINTLI+IMS+ G++  T+SNITHNERLEFLGDAV
Sbjct: 753  SLTNCGIRQPEYGDRKIHFMNTRKRGINTLISIMSRFGKEYETDSNITHNERLEFLGDAV 812

Query: 834  VEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVE 893
            VEFITSIHLFH+FPD+EEGGLATYRAAIVQNQHLA LAK + LE+FMLYAHGSDLCHE+E
Sbjct: 813  VEFITSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKTLHLEEFMLYAHGSDLCHELE 872

Query: 894  LKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGD 953
            L+HA+ANCFEALMGAL LDGGI+ AD+VF+  L++++      W+ YP HPLQEQEP GD
Sbjct: 873  LRHALANCFEALMGALLLDGGIETADRVFAYALFQEDTNLRNIWVNYPPHPLQEQEPLGD 932

Query: 954  RQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVL 1013
            R  +E   +LK L   E + GV FNHIRLLAR FT RS+G+TNLTLGSNQRLEFLGDTVL
Sbjct: 933  RHHIESFEMLKTLTKFEDAIGVNFNHIRLLARAFTDRSIGFTNLTLGSNQRLEFLGDTVL 992

Query: 1014 QLITSDYLY 1022
            QLI S+YLY
Sbjct: 993  QLICSEYLY 1001



 Score = 63.9 bits (154), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 6/102 (5%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 974  TNLTLGSNQRLEFLGDTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLG 1033

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGID 916
            +  + +Y++      + +LK    A+  EA +GAL++D G++
Sbjct: 1034 MTTYAVYSNP-----KADLKTKDRADLLEAFLGALYVDKGLE 1070


>gi|158297080|ref|XP_555381.3| AGAP008087-PA [Anopheles gambiae str. PEST]
 gi|157015023|gb|EAL39656.3| AGAP008087-PA [Anopheles gambiae str. PEST]
          Length = 1404

 Score =  967 bits (2499), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/807 (58%), Positives = 587/807 (72%), Gaps = 36/807 (4%)

Query: 229  LDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDSYECT 288
            L KW  N C +  ++  K   LA M  D    E++ +W RS+PA+LYY KR  D   E T
Sbjct: 223  LSKWCRNYCETSEDIARK---LAEMAND----EDRTLWVRSSPAELYY-KRVSDKVVEST 274

Query: 289  QKTRTICDEFES-VIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSS 347
             +   +C  FE  +I+    ++ ++  ++    ++K+K    K  K     C+S+   S 
Sbjct: 275  ARLDALCTLFEEELIKRAERIRATQTPYNPPPRKRKMKMCRHKHDK-----CSSSSESSD 329

Query: 348  GSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRR 407
                  D  S          M EL  K  HP RLH +LW+ND GEMNDGPLCRCS++SRR
Sbjct: 330  EEMEFEDECS----------MEELTAKIKHPLRLHVDLWYNDPGEMNDGPLCRCSARSRR 379

Query: 408  SGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGF 467
            +GIRH  Y GE+    C P++NNADKLYHYR+T+SPPTNFL   PT+I+HD  EF+FEGF
Sbjct: 380  TGIRHGKYPGEEGFPKCIPNSNNADKLYHYRITISPPTNFLTKTPTIIKHDQHEFLFEGF 439

Query: 468  SLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDL 527
            SL +H P+ +LPTCKVIRFNI+YTI+YIEE++P  FT+++  LF  YLF E+LELVD  +
Sbjct: 440  SLLAHEPIGELPTCKVIRFNIEYTILYIEEQMPENFTIRELNLFDRYLFRELLELVDFTV 499

Query: 528  KSANNKD--GCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDL 585
            + + + +   CP +H +PRFVR+L DNGKE+L M  VL +   +  P++   + K   D+
Sbjct: 500  QPSGSGEDSSCPCYHFLPRFVRDLPDNGKEVLAMSEVLRYLLDNSGPLVPPDMLKEMMDM 559

Query: 586  STYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRE----------SETNDIYPDAVHFGS 635
            S  EWQD+ D VKGM++  PG KPC++RVDQLDR            E   ++P  VHFG 
Sbjct: 560  SQNEWQDYVDYVKGMVVSNPGMKPCSVRVDQLDRNVGDVPEANAIDENGLVHPVIVHFGI 619

Query: 636  RPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRG 695
            RP QL +AG+P++QK W+ Y+K RHL+AN  K + EDKR+L AKE RL EMR   +MKR 
Sbjct: 620  RPPQLSYAGNPEYQKAWREYIKFRHLIANMSKPSFEDKRKLEAKENRLLEMRMQGRMKRN 679

Query: 696  VTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLAL 755
            +T+A+S++ F+RTGIMCDMVQHAMLIPVL  HLRFHRSLNVLE  I Y F NRY LQLAL
Sbjct: 680  ITIAVSAKAFHRTGIMCDMVQHAMLIPVLTGHLRFHRSLNVLERYIGYTFTNRYTLQLAL 739

Query: 756  THPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVA 815
            THPSY+ENFGTNPDHARNSL+NCG+RQPEYGDR+IH+ NTRKRGINTLI+IMS+ G++  
Sbjct: 740  THPSYKENFGTNPDHARNSLTNCGIRQPEYGDRKIHYMNTRKRGINTLISIMSRFGKEHE 799

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T+SNITHNERLEFLGDAVVEFITSIHLFH+FPD+EEGGLATYRAAIVQNQHLA LAK++ 
Sbjct: 800  TDSNITHNERLEFLGDAVVEFITSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLH 859

Query: 876  LEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFK 935
            LE+FMLYAHGSDLCHE+EL+HA+ANCFEALMGAL LDGGI+VAD+VF+  L+++++    
Sbjct: 860  LEEFMLYAHGSDLCHELELRHALANCFEALMGALLLDGGIEVADRVFAYALFQEDDTLRG 919

Query: 936  QWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYT 995
             W+ YP HPLQEQEP GDR  ++   +LK L   E S GV FNHIRLLAR FT RS+G+T
Sbjct: 920  IWVNYPSHPLQEQEPLGDRHHIDSFEMLKTLTRFEDSIGVQFNHIRLLARAFTDRSIGFT 979

Query: 996  NLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            NLTLGSNQRLEFLGDTVLQLI S+YLY
Sbjct: 980  NLTLGSNQRLEFLGDTVLQLICSEYLY 1006



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 64/113 (56%), Gaps = 6/113 (5%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 979  TNLTLGSNQRLEFLGDTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLG 1038

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +  + +Y++      + +LK    A+  EA +GAL++D G++  +      L+
Sbjct: 1039 MTQYAVYSNP-----KADLKTKDRADLLEAFLGALYVDKGLEYCEMFCHVCLF 1086


>gi|307169891|gb|EFN62400.1| Ribonuclease 3 [Camponotus floridanus]
          Length = 1167

 Score =  960 bits (2482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/801 (59%), Positives = 577/801 (72%), Gaps = 54/801 (6%)

Query: 229  LDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDS--YE 286
            L+K+R N C++ +++  K N L+AM ++ I+E EKKIWTR+APADLYY  R E++    +
Sbjct: 294  LEKYRRNYCATSKDIERKLNELSAMGSEGILESEKKIWTRTAPADLYYF-RDENNPKIMK 352

Query: 287  CTQKTRTICDEFESV-IQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTV 345
             T K + +C  F+ + I      +  +P +D            RK   R C H       
Sbjct: 353  STVKLQELCVTFKKLLIDRATEARALQPPYDPPP---------RKTRARLCRH------- 396

Query: 346  SSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKS 405
             S + SSS S S     E+D  M EL  K+ HP RLHPE+WFND GEMNDGPLCRCS+KS
Sbjct: 397  KSEACSSSSSDSDSSMDEDDRTMEELMAKKQHPQRLHPEMWFNDPGEMNDGPLCRCSAKS 456

Query: 406  RRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFE 465
            RRSGIRH IYAGE     C+ + NNADKLYHYR+T+SPPTNFL   PT+I+HD  EFIFE
Sbjct: 457  RRSGIRHGIYAGEGAINKCDLNMNNADKLYHYRITISPPTNFLTKTPTIIKHDEHEFIFE 516

Query: 466  GFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDL 525
                                          EEK+P  FT+++ + F  YLF EILELVD 
Sbjct: 517  ------------------------------EEKLPENFTIQELDYFQMYLFKEILELVDF 546

Query: 526  DLKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDL 585
            DL +A +K GC QFH MPRFVR+L DNG+E+L M  VL +   S   +I          +
Sbjct: 547  DLHAAQDKSGCGQFHFMPRFVRDLADNGQEILSMNEVLNYLIKSSTLLIDPDDLPKLVAM 606

Query: 586  STYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDR----ESETNDIYPDAVHFGSRPLQLC 641
              Y+WQDFAD VKGM++  PG KPC++RVDQLDR    +      YP+ VHFG RP QL 
Sbjct: 607  PQYKWQDFADEVKGMVVTYPGKKPCSVRVDQLDRNQVDQPPGVTAYPEIVHFGIRPPQLS 666

Query: 642  FAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAIS 701
            +AG+ D+QK W+ YVK RHL+AN  K + EDKR+L AKE +LQE+RT SKMKR VTV +S
Sbjct: 667  YAGNADYQKAWRDYVKFRHLLANMSKPSFEDKRKLEAKENKLQELRTQSKMKRDVTVDVS 726

Query: 702  SRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYR 761
            S GFYRTGIMCD+VQHAMLIPVL+CHLRFH+SL+ LE  + Y+F+NRYLLQLALTHPSYR
Sbjct: 727  SEGFYRTGIMCDIVQHAMLIPVLVCHLRFHKSLDNLERTLGYEFKNRYLLQLALTHPSYR 786

Query: 762  ENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNIT 821
            ENFGTNPDHARNSL+NCG+RQPEYGDRRIH+ NTRKRGINTLINIMS+ G K  TES+I 
Sbjct: 787  ENFGTNPDHARNSLTNCGIRQPEYGDRRIHYMNTRKRGINTLINIMSRFGAKTETESSIA 846

Query: 822  HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
            HNERLEFLGDAVVEF+TSIHLFH+FPD+EEGGLATYRAAIVQNQHLA LAK++ LE++ML
Sbjct: 847  HNERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLSLEEYML 906

Query: 882  YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYP 941
            YAHGSDLCH++EL+HAMANCFEALMG+LFLDGGI+VAD+VF   L+K  E   K W+ YP
Sbjct: 907  YAHGSDLCHDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKSEEDLAKVWVNYP 966

Query: 942  QHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS 1001
            +HPLQEQEP GDRQW+    LL++L   E S G+ F HIRLLAR FT RS+GYTNLTLGS
Sbjct: 967  RHPLQEQEPTGDRQWIPSFELLQKLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGS 1026

Query: 1002 NQRLEFLGDTVLQLITSDYLY 1022
            NQRLEFLGDTVLQLI S+YLY
Sbjct: 1027 NQRLEFLGDTVLQLIVSEYLY 1047



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 63/113 (55%), Gaps = 7/113 (6%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 1020 TNLTLGSNQRLEFLGDTVLQLIVSEYLYKFFPEHHEGHLSLLRSSLVNNKTQAVVCDDLG 1079

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +  + LY +      + ELK    A+  EA +GAL++D G+     VF  V +
Sbjct: 1080 MTQYALYGNP-----KAELKTKDRADLLEAFLGALYVDKGLKYC-HVFCDVCF 1126


>gi|195026766|ref|XP_001986330.1| GH21300 [Drosophila grimshawi]
 gi|193902330|gb|EDW01197.1| GH21300 [Drosophila grimshawi]
          Length = 1324

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/851 (56%), Positives = 600/851 (70%), Gaps = 30/851 (3%)

Query: 185  RRSRSKSRSESKSRSEVPRQACARRSRSRSRILSPKRSGEALSNLDKWRMNNCSSEREMT 244
            R++R+ S   ++  + V     +   RS S   +PK   E    L ++  N C    +  
Sbjct: 190  RQARTGSYPYARKTTSVNEDTRSYSKRSESDAYAPKIETERDRVLRQYCANYCEKSEDYI 249

Query: 245  EKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDSYECTQKTRTICDEFES-VIQ 303
            +K   L   EA        + W RS+PA+LYY +   +   +   +   +C  F+  +IQ
Sbjct: 250  KKIKALNEAEA------PAETWVRSSPAELYYERTKTEHEVKAKTRLHKLCALFDDELIQ 303

Query: 304  NFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAE 363
              V  +++ P ++            RK  +R C H   + + +  S S SDS       E
Sbjct: 304  RAVRERQNLPAYEPPP---------RKTRRRACKH--KHKSEACSSSSDSDSDEDAFKIE 352

Query: 364  EDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAF 423
            +D  M EL  K  HP R+HP+LW ND GEMNDGPLCRCS+KSRR GIRH IY GE     
Sbjct: 353  QDCCMEELSRKVLHPQRVHPDLWHNDAGEMNDGPLCRCSAKSRRIGIRHGIYPGEKGYLV 412

Query: 424  CNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKV 483
            C+ DTNNA  LYHYR+T+SPPTNFL   PT+I+HD  EF+FEGFSL SH  L  LP CKV
Sbjct: 413  CDKDTNNAANLYHYRITISPPTNFLTKTPTIIKHDEHEFLFEGFSLLSHVRLTDLPVCKV 472

Query: 484  IRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDL---KSANNKDGCPQFH 540
            IRFNI+YTI Y EEK+P  FT+++ +LFF YLFHE+LELVD +L    SAN  D CP FH
Sbjct: 473  IRFNIEYTIEYDEEKMPENFTIRELDLFFKYLFHELLELVDFNLIPNGSANADDSCPAFH 532

Query: 541  IMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGM 600
             +PRFVREL DNGKE+L M  VL++   +   ++  +     + +ST+EWQ + D +KGM
Sbjct: 533  FLPRFVRELPDNGKEVLAMCEVLKYLLDNSAELVERQQLLHLNQISTHEWQKYVDIIKGM 592

Query: 601  IIVKPGSKPCAMRVDQLDR---------ESETNDIYPDAVHFGSRPLQLCFAGSPDFQKL 651
            ++ KPG KPC++RVDQLDR         + ET   +P  VHFG RP QL +AG+P++QK 
Sbjct: 593  LVTKPGHKPCSLRVDQLDRNNSDLPVCLDRETGISHPAIVHFGIRPPQLSYAGNPEYQKA 652

Query: 652  WKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIM 711
            W+ YVK RHL+AN  K + +DKR+L  KEQRLQEMRT  +MKR +TVAISS GFYRTGIM
Sbjct: 653  WREYVKFRHLMANMSKPSFKDKRKLEDKEQRLQEMRTQGRMKRNITVAISSEGFYRTGIM 712

Query: 712  CDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHA 771
            CD+VQHAMLIPVL  HLRFH+SL++LE+ I YKF+NRYLLQLALTHPSY+EN+GTNPDHA
Sbjct: 713  CDIVQHAMLIPVLTGHLRFHKSLDLLEESIGYKFKNRYLLQLALTHPSYKENYGTNPDHA 772

Query: 772  RNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGD 831
            RNSL+NCG+RQPEYGDR+IH+ NTRKRGINTL++IMS+ G+   T SNITHNERLEFLGD
Sbjct: 773  RNSLTNCGIRQPEYGDRKIHYMNTRKRGINTLVSIMSRFGKDHETLSNITHNERLEFLGD 832

Query: 832  AVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHE 891
            AVVEF++SIHLF +FP++EEGGLATYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLCHE
Sbjct: 833  AVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHE 892

Query: 892  VELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPD 951
            +EL+HAMANCFEALMGAL LDGGI VAD+VF+  L++ ++   K W   P+HPLQEQEP 
Sbjct: 893  LELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDDKLLKIWKNLPEHPLQEQEPL 952

Query: 952  GDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDT 1011
            GDR  ++   +LK L   E S G+ F HIRLLAR FT RS+G+T+LTLGSNQRLEFLGDT
Sbjct: 953  GDRSCIDSYRVLKDLTKFEDSVGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDT 1012

Query: 1012 VLQLITSDYLY 1022
            VLQLI S+YLY
Sbjct: 1013 VLQLICSEYLY 1023



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 64/113 (56%), Gaps = 6/113 (5%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 996  THLTLGSNQRLEFLGDTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLG 1055

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +  + +YA+      + +LK    A+  EA +GAL++D G+   +Q     L+
Sbjct: 1056 MPQYAVYANP-----KADLKTKDRADLLEAFLGALYVDKGLLYCEQFCHVCLF 1103


>gi|312375831|gb|EFR23111.1| hypothetical protein AND_13526 [Anopheles darlingi]
          Length = 1254

 Score =  949 bits (2453), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/808 (58%), Positives = 585/808 (72%), Gaps = 36/808 (4%)

Query: 229  LDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDSYECT 288
            L KWR N C +  ++  +   LA M  D    EE   W RS+PA+ YY KR  D   E T
Sbjct: 49   LSKWRRNFCETSEDIARQ---LAEMTND----EEHTGWVRSSPAEQYY-KRVSDRIVEST 100

Query: 289  QKTRTICDEF-ESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSS 347
             +   +C  F + ++Q    VK ++  ++    R+K+K    K    KCS          
Sbjct: 101  VRLDKLCQLFDQQLVQRAARVKATQSTYEPPPRRRKMKMCRHKH--DKCS---------- 148

Query: 348  GSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRR 407
               SS  S   E + E +  M EL  K  HP RLH +LW+ND GEMNDGPLCRCS++SRR
Sbjct: 149  --SSSETSDEDELEYENECSMEELTAKIRHPLRLHVDLWYNDPGEMNDGPLCRCSARSRR 206

Query: 408  SGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGF 467
            +GIRH  Y GE     C P++NNADKL+HYR+T+SPPTNFL   PT+I+HD  EF+FEGF
Sbjct: 207  TGIRHGKYPGEHGFPKCIPNSNNADKLHHYRITISPPTNFLTKTPTIIKHDKHEFLFEGF 266

Query: 468  SLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDL 527
            SL SH P+ +LPTCKVIRFNI+YTI+YIEE +P  FT+++ +LF  YLF E+LELVD ++
Sbjct: 267  SLLSHQPIGELPTCKVIRFNIEYTILYIEEPMPENFTIRELDLFEQYLFRELLELVDFNV 326

Query: 528  K--SANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDL 585
            +   A+    C  +H +PRFVR+L DNGKE+L M  VL +   +  P++  +L      +
Sbjct: 327  QPSGADTSTSCSCYHFLPRFVRDLPDNGKEVLAMSEVLRYLLDNSGPLVQPELLGEMMAM 386

Query: 586  STYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDR------ESETND----IYPDAVHFGS 635
               EWQD+ D VKGM++  PG KPC++RVDQLDR      E+   D    ++P  VHFG 
Sbjct: 387  EQSEWQDYVDYVKGMVVTNPGMKPCSVRVDQLDRNNGDVPEAAALDANGRLHPVIVHFGI 446

Query: 636  RPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRG 695
            RP QL +AG+P++QK W+ Y+K RHLVAN  K + EDKR+L AKE RL EMR   +MKR 
Sbjct: 447  RPPQLSYAGNPEYQKAWREYIKNRHLVANMSKPSFEDKRKLEAKENRLLEMRMQGRMKRN 506

Query: 696  VTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLAL 755
            +T+A+S++ F RTGIMCD+VQHAMLIPVL  HLRFHRSL++LE  I Y+F NRY LQLAL
Sbjct: 507  ITIAVSAKSFRRTGIMCDIVQHAMLIPVLTGHLRFHRSLDMLEKHIDYRFTNRYTLQLAL 566

Query: 756  THPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVA 815
            THPSY+ENFGTNPDHARNSL+NCG+RQPEYGDR+IH+ NTRKRGINTLI+IMS+ G++  
Sbjct: 567  THPSYKENFGTNPDHARNSLTNCGIRQPEYGDRKIHYMNTRKRGINTLISIMSRFGKEHE 626

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T+SNITHNERLEFLGDAVVEFITSIHLFH+FPD+EEGGLATYRAAIVQNQHLA LAK++ 
Sbjct: 627  TDSNITHNERLEFLGDAVVEFITSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLH 686

Query: 876  LEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFK 935
            LE+FMLYAHGSDLCHE+EL+HA+ANCFEALMGAL LDGGI VAD+VF+  L+  +E +  
Sbjct: 687  LEEFMLYAHGSDLCHELELRHALANCFEALMGALLLDGGIAVADRVFAYALFGPDEPKLH 746

Query: 936  Q-WMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGY 994
            + W  YP+HPLQEQEP+GDR  +E   +LK L   E S GV F+HIRLLAR FT RSMG+
Sbjct: 747  EIWTNYPRHPLQEQEPNGDRHHIESFEMLKTLTRFEDSIGVKFSHIRLLARAFTDRSMGF 806

Query: 995  TNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            TNLTLGSNQRLEFLGDTVLQLI S+YLY
Sbjct: 807  TNLTLGSNQRLEFLGDTVLQLICSEYLY 834



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 64/113 (56%), Gaps = 6/113 (5%)

Query: 816 TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
           T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 807 TNLTLGSNQRLEFLGDTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLG 866

Query: 876 LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +  + +Y++      + ELK    A+  EA +GAL++D G+   ++     L+
Sbjct: 867 MTQYAVYSNP-----KAELKTKDRADLLEAFLGALYVDKGLVYCEKFCQVCLF 914


>gi|195402669|ref|XP_002059927.1| GJ15113 [Drosophila virilis]
 gi|194140793|gb|EDW57264.1| GJ15113 [Drosophila virilis]
          Length = 1306

 Score =  946 bits (2444), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/832 (56%), Positives = 590/832 (70%), Gaps = 30/832 (3%)

Query: 204  QACARRSRSRSRILSPKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEK 263
            +  + R  S S    PK   E    L +W  N C    +  +K N L+  E         
Sbjct: 198  KGVSMRDWSESASNPPKLETERDRLLRQWCSNYCEKPEDYIKKMNALSEAEV------PA 251

Query: 264  KIWTRSAPADLYYTKRTEDDSYECTQKTRTICDEFES-VIQNFVSVKESKPQFDYTANRK 322
            + W RS+PA+LYY +   +   +   +   +C  F+  ++Q    V+++ P +   A   
Sbjct: 252  ESWVRSSPAELYYERTKTEHEVKAKTRLHKLCALFDDELLQRADRVRQTLPVYVPPA--- 308

Query: 323  KIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLH 382
                  RK  +R C H   + + +  S S SDS       E+D  M EL  K  HP R+H
Sbjct: 309  ------RKSRRRACKH--KHKSEACSSSSDSDSDEDAFKIEQDCCMEELSCKVQHPQRVH 360

Query: 383  PELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVS 442
            P+LW ND GEMNDGPLCRCS+KSRR GIRH IY GE     C+ DTNNA  LYHYR+T+S
Sbjct: 361  PDLWHNDAGEMNDGPLCRCSAKSRRIGIRHGIYPGEKGYPLCDKDTNNAASLYHYRITIS 420

Query: 443  PPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNG 502
            PPTNFL   PT+I+HD  EF+FEGFSL SH  L  LP CKVIRFNI+YTI Y EEK+P  
Sbjct: 421  PPTNFLTKTPTIIKHDEHEFLFEGFSLLSHVRLTDLPVCKVIRFNIEYTIEYDEEKMPEN 480

Query: 503  FTVKDTELFFNYLFHEILELVDLDL---KSANNKDGCPQFHIMPRFVRELKDNGKELLPM 559
            FT+++ +LFF YLFHE+LELVD +L    + N ++ CP FH +PRFVREL DNGKE+L M
Sbjct: 481  FTIRELDLFFKYLFHELLELVDFNLIPNGAINGEESCPAFHFLPRFVRELPDNGKEVLAM 540

Query: 560  YRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDR 619
              VL++   +   ++  +     + +S +EWQ + D +KGM++ KPG KPC++RVDQLDR
Sbjct: 541  CEVLKYLLDNSAELVERQQLLHLNQISQHEWQKYVDFIKGMLVTKPGYKPCSLRVDQLDR 600

Query: 620  ---------ESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTA 670
                     + ET   +P  VHFG RP QL +AG+P++QK W+ YVK RHL+AN  K + 
Sbjct: 601  NNSDLPECLDRETGISHPAIVHFGIRPPQLSYAGNPEYQKAWREYVKFRHLMANMSKPSF 660

Query: 671  EDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRF 730
            +DKR+L  KEQRLQEMRT  +MKR +TVAISS GFYRTGIMCD+VQHAMLIPVL  HLRF
Sbjct: 661  KDKRKLEDKEQRLQEMRTQGRMKRNITVAISSEGFYRTGIMCDIVQHAMLIPVLTGHLRF 720

Query: 731  HRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRI 790
            H+SL++LE+ I YKF+NRYLLQLALTHPSY+EN+GTNPDHARNSL+NCG+RQPEYGDR+I
Sbjct: 721  HKSLDLLEESIGYKFKNRYLLQLALTHPSYKENYGTNPDHARNSLTNCGIRQPEYGDRKI 780

Query: 791  HFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIE 850
            H+ NTRKRGINTL++IMS+ G+   T SNITHNERLEFLGDAVVEF++SIHLF +FP++E
Sbjct: 781  HYMNTRKRGINTLVSIMSRFGKDHETVSNITHNERLEFLGDAVVEFLSSIHLFFMFPELE 840

Query: 851  EGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALF 910
            EGGLATYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLCHE+EL+HAMANCFEALMGAL 
Sbjct: 841  EGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALL 900

Query: 911  LDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLE 970
            LDGGI VAD+VF+  L++ +E   K W   P+HPLQEQEP GDR  ++   +LK L   E
Sbjct: 901  LDGGIKVADEVFTDALFRQDEKLLKIWKNLPEHPLQEQEPLGDRSCIDSYRVLKDLTKFE 960

Query: 971  YSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
             S G+ F HIRLLAR FT RS+G+T+LTLGSNQRLEFLGDTVLQLI S+YLY
Sbjct: 961  DSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLY 1012



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 64/113 (56%), Gaps = 6/113 (5%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 985  THLTLGSNQRLEFLGDTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLG 1044

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +  + +YA+      + +LK    A+  EA +GAL++D G+   +Q     L+
Sbjct: 1045 MPKYAVYANP-----KADLKTKDRADLLEAFLGALYVDKGLLYCEQFCHVCLF 1092


>gi|195455348|ref|XP_002074681.1| GK23200 [Drosophila willistoni]
 gi|194170766|gb|EDW85667.1| GK23200 [Drosophila willistoni]
          Length = 1320

 Score =  944 bits (2440), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/887 (54%), Positives = 610/887 (68%), Gaps = 57/887 (6%)

Query: 154  RSSSRSKNNGYSHRSENSKSS--PTRTETNLKRRRSRSKSRSESKSRSEVPRQACARRSR 211
            R   R  N+G  H+  +++S   P R+  +   R  R +S    KS+ +V  +       
Sbjct: 170  RYEQRHPNSGGYHQPRHTRSQHYPNRSGQDYVPRSYRERSEPIEKSKPKVETE------- 222

Query: 212  SRSRILSPKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAP 271
             R R+L             +W  N C    +  +K   L+  EA        + W RS+P
Sbjct: 223  -RDRLLR------------QWCSNYCEKPEDYIKKMTALSEAEA------PAESWVRSSP 263

Query: 272  ADLYYTKRTEDDSYECTQKTRTICDEF-ESVIQNFVSVKESKPQFDYTANRKKIKRTNRK 330
            A+LYY +   ++  +   + + +C  F E ++Q    V+++ P +             RK
Sbjct: 264  AELYYERTKNENEVKGKVRLQKLCALFDEELLQRADRVRQTLPVY---------VPPPRK 314

Query: 331  KIKRKCSHCASNPTVSSGSESSSDSSSGEEDA---EEDNWMMELQLKQNHPDRLHPELWF 387
              +R C+H       S    SSS     +EDA   E+D  M EL  K  HP R+H +LW 
Sbjct: 315  ARRRVCNHKHK----SEACSSSSSDDDSDEDAFKIEQDCCMEELSRKVQHPQRVHADLWH 370

Query: 388  NDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNF 447
            ND GEMNDGPLCRCS+KSRR GIRH IY GE     C+ DTNNA  LYHYR+T+SPPTNF
Sbjct: 371  NDPGEMNDGPLCRCSAKSRRIGIRHGIYPGETGYRLCDKDTNNAGHLYHYRITISPPTNF 430

Query: 448  LINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKD 507
            L   PT+I+HD  EF+FEGFSL SH  L  LP CKVIRFNI+YTI Y EEK+P  FT+ +
Sbjct: 431  LTKTPTIIKHDEHEFLFEGFSLLSHVRLTDLPVCKVIRFNIEYTIEYDEEKMPENFTIHE 490

Query: 508  TELFFNYLFHEILELVDLDL---KSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLE 564
             +LFF YLFHE+LELVD DL    ++N++  CP FH +PRFVREL DNGKE+L M  VL+
Sbjct: 491  LDLFFKYLFHELLELVDFDLLPCGASNSEQSCPAFHFLPRFVRELPDNGKEVLAMCEVLK 550

Query: 565  FFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDR----- 619
            +   +   ++  +     + +S +EWQ++ D +KGM++ KPG KPC++RVDQLDR     
Sbjct: 551  YLLDNSAELVERQQLLHLNQISQHEWQNYVDIIKGMLVTKPGHKPCSLRVDQLDRNNSDL 610

Query: 620  ----ESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRR 675
                + ET   +P  VHFG RP QL +AG+P++QK W+ YVK RHL+AN  K + +DKR+
Sbjct: 611  PECSDRETGISHPAIVHFGIRPPQLSYAGNPEYQKAWREYVKFRHLMANMSKPSFKDKRK 670

Query: 676  LAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLN 735
            L  KEQRLQEMRT  +MKR +TVAISS GF+RTGIMCD+VQHAMLIPVL  HLRFH+SL+
Sbjct: 671  LEDKEQRLQEMRTQGRMKRNITVAISSEGFFRTGIMCDIVQHAMLIPVLTGHLRFHKSLD 730

Query: 736  VLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNT 795
            +LE+ I Y F+NRYLLQLALTHPSY+EN+GTNPDHARNSL+NCG+RQPEYGDR+IH+ NT
Sbjct: 731  LLEESIGYHFKNRYLLQLALTHPSYKENYGTNPDHARNSLTNCGIRQPEYGDRKIHYMNT 790

Query: 796  RKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLA 855
            RKRGINTL++IMS+ G+   T SNITHNERLEFLGDAVVEF++SIHLF +FP++EEGGLA
Sbjct: 791  RKRGINTLVSIMSRFGKDHETVSNITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLA 850

Query: 856  TYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGI 915
            TYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLCHE+EL+HAMANCFEALMGAL LDGGI
Sbjct: 851  TYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGI 910

Query: 916  DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGV 975
             VAD+VF+  L++  E     W   P+HPLQEQEP GDR  ++   +LK+L   E S G+
Sbjct: 911  KVADEVFTDALFRQEEKLLNIWKNLPEHPLQEQEPLGDRSCIDSYRVLKELTKFEDSVGI 970

Query: 976  IFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
             F HIRLLAR FT RS+G+T+LTLGSNQRLEFLGDTVLQLI S+YLY
Sbjct: 971  KFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLY 1017



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 64/113 (56%), Gaps = 6/113 (5%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 990  THLTLGSNQRLEFLGDTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLG 1049

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +  + +YA+      + +LK    A+  EA +G+L++D G+   +Q     L+
Sbjct: 1050 MPKYAVYANP-----KADLKTKDRADLLEAFLGSLYVDKGLLYCEQFCHVCLF 1097


>gi|194863666|ref|XP_001970553.1| GG23313 [Drosophila erecta]
 gi|190662420|gb|EDV59612.1| GG23313 [Drosophila erecta]
          Length = 1329

 Score =  942 bits (2434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/894 (53%), Positives = 613/894 (68%), Gaps = 39/894 (4%)

Query: 143  HRDDESNQRRNRSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKSRSEVP 202
            H  +  + +  R +   ++  Y+HR       P +   +     +R+ +  E   RS   
Sbjct: 162  HDQEHRHIQETRYTHEPRHGHYAHR-------PPKGSQHGYYGSARNPASEEYSQRSYHE 214

Query: 203  RQACARRSRSRSRILSPKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEE 262
            R       ++R++   PK   E    L +W  N C    +  +K N L+  EAD  +E  
Sbjct: 215  RVKSEPLEKTRAK---PKVETERDRLLKQWCSNFCEKPEDYVKKMNALS--EADAQVES- 268

Query: 263  KKIWTRSAPADLYYTKRTEDDSYECTQKTRTICDEFES-VIQNFVSVKESKPQFDYTANR 321
               W RS+PA+LYY +   ++      + + +C+ FE  +++    V+E  P +      
Sbjct: 269  ---WVRSSPAELYYERTKSENEVSGRARLQKLCNLFEEELLRRAERVREKLPVY------ 319

Query: 322  KKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRL 381
                   RK  +R C H   +   SS S S  DS       E+D  M EL  K  HP R+
Sbjct: 320  ---VPPPRKARRRVCKHKHKSEACSSSSSSDDDSDEDAFKIEQDCCMEELSRKVQHPQRV 376

Query: 382  HPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTV 441
            H +LW ND GEMNDGPLCRCS+KSRR GIRH IY GE     C+P++NNA KL+HYR+++
Sbjct: 377  HADLWHNDAGEMNDGPLCRCSAKSRRIGIRHGIYPGETGYKVCDPNSNNAGKLFHYRISI 436

Query: 442  SPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPN 501
            SPPTNFL   PT+I+HD  EF+FEGFSL SH  L  LP CKVIRFNI+YTI Y EEK+P 
Sbjct: 437  SPPTNFLTKTPTIIKHDEHEFLFEGFSLLSHVRLTDLPVCKVIRFNIEYTIEYDEEKMPE 496

Query: 502  GFTVKDTELFFNYLFHEILELVDLDL----KSANNKDGCPQFHIMPRFVRELKDNGKELL 557
             FT+ + +LFF YLFHE+LELVD +L     S + ++ CP FH  PRFVR+L DNGKE+L
Sbjct: 497  NFTIHELDLFFKYLFHELLELVDFNLMPNLASGSVEESCPAFHFFPRFVRDLPDNGKEVL 556

Query: 558  PMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQL 617
             M  VL +   +   ++  +     + +S  EWQ++ D +KGM++ KPG KPC++RVDQL
Sbjct: 557  AMVEVLRYLLDNSAQLVERQQLLHLNQISQSEWQNYVDFIKGMLVTKPGYKPCSLRVDQL 616

Query: 618  DR---------ESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKR 668
            DR         + ET   +P  VHFG RP QL +AG+P++QK W+ YVK RHL+AN  K 
Sbjct: 617  DRNNSDLPECVDRETGISHPAIVHFGIRPPQLSYAGNPEYQKAWREYVKFRHLMANMSKP 676

Query: 669  TAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHL 728
            + +DKR+L  KEQRLQEMRT  +MKR +TVAISS GFYRTGIMCD+VQHAMLIPVL  HL
Sbjct: 677  SFKDKRKLEEKEQRLQEMRTQGRMKRNITVAISSEGFYRTGIMCDVVQHAMLIPVLTGHL 736

Query: 729  RFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDR 788
            RFH+SL++LE+ I Y+F+NRYLLQLALTHPSY+EN+GTNPDHARNSL+NCG+RQPEYGDR
Sbjct: 737  RFHKSLDLLEESIGYRFKNRYLLQLALTHPSYKENYGTNPDHARNSLTNCGIRQPEYGDR 796

Query: 789  RIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPD 848
            +IH+ NTRKRGINTL++IMS+ G+   T SNITHNERLEFLGDAVVEF++SIHLF +FP+
Sbjct: 797  KIHYMNTRKRGINTLVSIMSRFGKDHETVSNITHNERLEFLGDAVVEFLSSIHLFFMFPE 856

Query: 849  IEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGA 908
            +EEGGLATYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLCHE+EL+HAMANCFEALMGA
Sbjct: 857  LEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGA 916

Query: 909  LFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQY 968
            L LDGGI VAD+VF+  L++ +E     W   P+HPLQEQEP GDR  ++   +LK+L  
Sbjct: 917  LLLDGGIKVADEVFTDALFRQDEKLLSIWKNLPEHPLQEQEPLGDRSCIDSYRVLKELTK 976

Query: 969  LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
             E S G+ F HIRLLAR FT RS+G+T+LTLGSNQRLEFLGDTVLQLI S+YLY
Sbjct: 977  FEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLY 1030



 Score = 66.2 bits (160), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 64/113 (56%), Gaps = 6/113 (5%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 1003 THLTLGSNQRLEFLGDTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLG 1062

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +  + +YA+      + +LK    A+  EA +GAL++D G+   +Q     L+
Sbjct: 1063 MPKYAVYANP-----KADLKTKDRADLLEAFLGALYVDKGLLYCEQFCHVCLF 1110


>gi|195119378|ref|XP_002004208.1| GI19789 [Drosophila mojavensis]
 gi|193909276|gb|EDW08143.1| GI19789 [Drosophila mojavensis]
          Length = 1297

 Score =  941 bits (2431), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/885 (54%), Positives = 607/885 (68%), Gaps = 37/885 (4%)

Query: 153  NRSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKSRSEVPRQACARRSRS 212
            +RS  R  N  Y++R  +    P     N ++        +  + R   PRQ+     R 
Sbjct: 129  SRSDYRQGNYSYNYRPPSHNYYPN----NYQKNYGGYNYNNRYEQRYYNPRQSYHANQRI 184

Query: 213  RSRIL-----SPKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWT 267
               +      +PK   E    L +W  N C    +  +K N L   EA        + W 
Sbjct: 185  PKSMPNEAANTPKMETERDRLLRQWCSNYCEKSEDYIKKMNALIEAEA------PAESWV 238

Query: 268  RSAPADLYYTKRTEDDSYECTQKTRTICDEFES-VIQNFVSVKESKPQFDYTANRKKIKR 326
            RS+PA+LYY +   +       +    C+ F+  +I+    V+++ P +   A       
Sbjct: 239  RSSPAELYYERTKTEHEVRAKPRLHKRCELFQQQLIERAERVRKTLPVYVPPA------- 291

Query: 327  TNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELW 386
              RK  +R C+H   + + +  S S SDS       E+D  M EL  K  HP RLH +LW
Sbjct: 292  --RKTRRRACNH--KHKSEACSSSSDSDSDEDAFKIEQDCCMEELSRKMEHPQRLHSDLW 347

Query: 387  FNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTN 446
             ND GEMNDGPLCRCS+KSRR GIRH IY GE     C+ DTNNA KL+HYR+T+SPPTN
Sbjct: 348  HNDAGEMNDGPLCRCSAKSRRIGIRHGIYPGEKGYPLCDKDTNNASKLFHYRITISPPTN 407

Query: 447  FLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVK 506
            FL   PT+I+HD  EF+FEGFSL SH  L  LP CKVIRFNI+YTI Y EEK+P  FT++
Sbjct: 408  FLTKTPTIIKHDEHEFLFEGFSLLSHVRLTDLPVCKVIRFNIEYTIEYDEEKMPENFTIR 467

Query: 507  DTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFF 566
            + +LFF YLFHE+LELVD +L   N +  CP FH +PRFVREL DNGKE+L M  VL++ 
Sbjct: 468  ELDLFFKYLFHELLELVDFNL-MPNVEQSCPAFHFLPRFVRELPDNGKEVLAMCEVLKYL 526

Query: 567  TSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDR------- 619
              +   ++  +  +  +D+S +EWQ + D +KGM++ KPG KPC++RVDQLDR       
Sbjct: 527  LDNSAELVEPQQLQHLNDISQHEWQKYVDYIKGMLVTKPGYKPCSLRVDQLDRNNSDLPE 586

Query: 620  --ESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLA 677
              + E    +P  VHFG RP QL +AG+P++QK W+ YVK RHL+AN  K + +DKR+L 
Sbjct: 587  CLDREKGISHPAIVHFGIRPPQLSYAGNPEYQKAWREYVKFRHLMANMSKPSFKDKRKLE 646

Query: 678  AKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVL 737
             KEQRLQEMRT  +MKR +TVAISS GFYRTGIMCD+VQHAMLIPVL  HLRFH+SL++L
Sbjct: 647  DKEQRLQEMRTQGRMKRNITVAISSEGFYRTGIMCDIVQHAMLIPVLTGHLRFHKSLDLL 706

Query: 738  EDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRK 797
            E+ I YKF+NRYLLQLALTHPSY+EN+GTNPDHARNSL+NCG+RQPEYGDR+IH+ NTRK
Sbjct: 707  EESIGYKFKNRYLLQLALTHPSYKENYGTNPDHARNSLTNCGIRQPEYGDRKIHYMNTRK 766

Query: 798  RGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATY 857
            RGINTL++IMS+ G+   T SNITHNERLEFLGDAVVEF++SIHLF +FP++EEGGLATY
Sbjct: 767  RGINTLVSIMSRFGKDHETVSNITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATY 826

Query: 858  RAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDV 917
            RAAIVQNQHLA LAK++ LE+FMLYAHGSDLCHE+EL+HAMANCFEALMGAL LDGGI V
Sbjct: 827  RAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIKV 886

Query: 918  ADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIF 977
            AD+VF+  L++ ++     W   P+HPLQEQEP GDR  ++   +LK L   E S G+ F
Sbjct: 887  ADEVFTDALFRQDDKLLAIWKNLPEHPLQEQEPLGDRSCIDAYRVLKDLTRFEDSIGIKF 946

Query: 978  NHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
             HIRLLAR FT RS+G+T+LTLGSNQRLEFLGDTVLQLI S+YLY
Sbjct: 947  KHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLY 991



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 6/113 (5%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 964  THLTLGSNQRLEFLGDTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLG 1023

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +  F +YA+      + +LK    A+  EA +GAL++D G+   +Q     L+
Sbjct: 1024 MPKFAVYANP-----KADLKTKDRADLLEAFLGALYVDKGLLYCEQFCHVCLF 1071


>gi|195151442|ref|XP_002016656.1| GL11697 [Drosophila persimilis]
 gi|194110503|gb|EDW32546.1| GL11697 [Drosophila persimilis]
          Length = 1262

 Score =  934 bits (2413), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/817 (57%), Positives = 585/817 (71%), Gaps = 30/817 (3%)

Query: 219  PKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTK 278
            PK   E    L +W  N C    +  EK N L    A   +E     W RS+PA+ YY +
Sbjct: 197  PKVETERDRLLRQWCSNYCEKPEDYIEKMNALNDTAA--TVES----WVRSSPAEPYYER 250

Query: 279  RTEDDSYECTQKTRTICDEFES-VIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCS 337
               ++     ++ + +CD FE  +++    V+++ P +             RK  +R C 
Sbjct: 251  TNNENEVRSKKRLQKLCDLFEDELLKRADRVRKTLPVY---------APPPRKARRRVCK 301

Query: 338  HCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGP 397
            H   +   SS S+  SD    +   E+D  M EL  K  HP R+H +LW ND GEMNDGP
Sbjct: 302  HKHKSEACSSSSDDDSDEDGFK--VEQDCCMEELSRKVQHPQRVHADLWHNDAGEMNDGP 359

Query: 398  LCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEH 457
            LCRCS+KSRRSGIRH IY GE     C+  TNNA+ L+HYR+T+SPPTNFL   PT+I+H
Sbjct: 360  LCRCSAKSRRSGIRHGIYPGETGYKLCDKATNNANSLFHYRITISPPTNFLTKTPTIIKH 419

Query: 458  DNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFH 517
            D  EF+FEGFSL SH  L  LP CKVIRFNI+YTI Y EEK+P+ FT+ + +LFF YLFH
Sbjct: 420  DEHEFLFEGFSLLSHVRLTDLPVCKVIRFNIEYTIEYDEEKMPDNFTIHELDLFFKYLFH 479

Query: 518  EILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVI 574
            E+LELVD +L+     DG   CP FH +PRFVR+L DNGKE+L M  VL++   +   ++
Sbjct: 480  ELLELVDFNLEPNTGADGVESCPAFHFLPRFVRDLPDNGKEVLAMCEVLKYLLDNSAELV 539

Query: 575  SEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRES---------ETND 625
              +     + +S  EWQ++ D +KGM++ KPG KPC++RVDQLDR +         E+  
Sbjct: 540  ERQQLLHLNQISQSEWQNYVDFIKGMLVTKPGHKPCSLRVDQLDRNNSDLPECVHQESGI 599

Query: 626  IYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQE 685
             +P  VHFG RP QL +AG+P++QK W+ YVK RHL+AN  K + +DKR+L  KEQRLQE
Sbjct: 600  SHPAIVHFGIRPPQLSYAGNPEYQKAWRDYVKFRHLMANMSKPSFKDKRKLEDKEQRLQE 659

Query: 686  MRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKF 745
            MRT  +MKR +TVAISS GF+RTGIMCD+VQHAMLIPVL CHLRFH+SL++LE+ I Y+F
Sbjct: 660  MRTQGRMKRNITVAISSEGFFRTGIMCDIVQHAMLIPVLTCHLRFHKSLDLLEESIGYQF 719

Query: 746  QNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLIN 805
            +NRYLLQLALTHPSY+EN+GTNPDHARNSL+NCG+RQPEYGDR+IH+ NTRKRGINTL++
Sbjct: 720  KNRYLLQLALTHPSYKENYGTNPDHARNSLTNCGIRQPEYGDRKIHYMNTRKRGINTLVS 779

Query: 806  IMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQ 865
            IMS+ G+   T SNITHNERLEFLGDAVVEF++SIHLF +FP++EEGGLATYRAAIVQNQ
Sbjct: 780  IMSRFGKDQETVSNITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQ 839

Query: 866  HLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSV 925
            HLA LAK++ LE+FMLYAHGSDLCHE+EL+HAMANCFEALMGAL LDGGI VAD+VF+  
Sbjct: 840  HLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTEA 899

Query: 926  LYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLAR 985
            L++        W   P+HPLQEQEP GDR+ ++   +LK L   E S G+ F HIRLLAR
Sbjct: 900  LFRKEGKLLNIWKNLPEHPLQEQEPLGDRRCIDSYRVLKDLTKFEDSIGLKFKHIRLLAR 959

Query: 986  VFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
             FT RS+G+T+LTLGSNQRLEFLGDTVLQLI+S+YLY
Sbjct: 960  AFTDRSIGFTHLTLGSNQRLEFLGDTVLQLISSEYLY 996



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 65/113 (57%), Gaps = 6/113 (5%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I+S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 969  THLTLGSNQRLEFLGDTVLQLISSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLG 1028

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +  + +YA+      + +LK    A+  EA +G+L++D G+   +Q     L+
Sbjct: 1029 MTKYAVYANP-----KADLKTKDRADLLEAFLGSLYVDKGLLFCEQFCHVCLF 1076


>gi|198459728|ref|XP_001361471.2| GA21287 [Drosophila pseudoobscura pseudoobscura]
 gi|198136788|gb|EAL26049.2| GA21287 [Drosophila pseudoobscura pseudoobscura]
          Length = 1292

 Score =  933 bits (2412), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/817 (57%), Positives = 585/817 (71%), Gaps = 30/817 (3%)

Query: 219  PKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTK 278
            PK   E    L +W  N C    +  EK N L    A   +E     W RS+PA+ YY +
Sbjct: 197  PKVETERDRLLRQWCSNYCEKPEDYIEKMNALNDTAA--TVES----WVRSSPAEPYYER 250

Query: 279  RTEDDSYECTQKTRTICDEFES-VIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCS 337
               ++     ++ + +CD FE  +++    V+++ P +             RK  +R C 
Sbjct: 251  TNNENEVRSKKRLQKLCDLFEDELLKRADRVRKTFPVY---------APPPRKARRRVCK 301

Query: 338  HCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGP 397
            H   +   SS S+  SD    +   E+D  M EL  K  HP R+H +LW ND GEMNDGP
Sbjct: 302  HKHKSEACSSSSDDDSDEDGFK--VEQDCCMEELSRKVQHPQRVHADLWHNDAGEMNDGP 359

Query: 398  LCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEH 457
            LCRCS+KSRRSGIRH IY GE     C+  TNNA+ L+HYR+T+SPPTNFL   PT+I+H
Sbjct: 360  LCRCSAKSRRSGIRHGIYPGETGYKLCDKATNNANSLFHYRITISPPTNFLTKTPTIIKH 419

Query: 458  DNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFH 517
            D  EF+FEGFSL SH  L  LP CKVIRFNI+YTI Y EEK+P+ FT+ + +LFF YLFH
Sbjct: 420  DEHEFLFEGFSLLSHVRLTDLPVCKVIRFNIEYTIEYDEEKMPDNFTIHELDLFFKYLFH 479

Query: 518  EILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVI 574
            E+LELVD +L+     DG   CP FH +PRFVR+L DNGKE+L M  VL++   +   ++
Sbjct: 480  ELLELVDFNLEPNTGADGVESCPAFHFLPRFVRDLPDNGKEVLAMCEVLKYLLDNSAELV 539

Query: 575  SEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRES---------ETND 625
              +     + +S  EWQ++ D +KGM++ KPG KPC++RVDQLDR +         E+  
Sbjct: 540  ERQQLLHLNQISQSEWQNYVDFIKGMLVTKPGHKPCSLRVDQLDRNNSDLPECVHQESGI 599

Query: 626  IYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQE 685
             +P  VHFG RP QL +AG+P++QK W+ YVK RHL+AN  K + +DKR+L  KEQRLQE
Sbjct: 600  SHPAIVHFGIRPPQLSYAGNPEYQKAWRDYVKFRHLMANMSKPSFKDKRKLEDKEQRLQE 659

Query: 686  MRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKF 745
            MRT  +MKR +TVAISS GF+RTGIMCD+VQHAMLIPVL CHLRFH+SL++LE+ I Y+F
Sbjct: 660  MRTQGRMKRNITVAISSEGFFRTGIMCDIVQHAMLIPVLTCHLRFHKSLDLLEESIGYQF 719

Query: 746  QNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLIN 805
            +NRYLLQLALTHPSY+EN+GTNPDHARNSL+NCG+RQPEYGDR+IH+ NTRKRGINTL++
Sbjct: 720  KNRYLLQLALTHPSYKENYGTNPDHARNSLTNCGIRQPEYGDRKIHYMNTRKRGINTLVS 779

Query: 806  IMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQ 865
            IMS+ G+   T SNITHNERLEFLGDAVVEF++SIHLF +FP++EEGGLATYRAAIVQNQ
Sbjct: 780  IMSRFGKDQETVSNITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQ 839

Query: 866  HLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSV 925
            HLA LAK++ LE+FMLYAHGSDLCHE+EL+HAMANCFEALMGAL LDGGI VAD+VF+  
Sbjct: 840  HLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTEA 899

Query: 926  LYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLAR 985
            L++        W   P+HPLQEQEP GDR+ ++   +LK L   E S G+ F HIRLLAR
Sbjct: 900  LFRKEGKLLNIWKNLPEHPLQEQEPLGDRRCIDSYRVLKDLTKFEDSIGLKFKHIRLLAR 959

Query: 986  VFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
             FT RS+G+T+LTLGSNQRLEFLGDTVLQLI+S+YLY
Sbjct: 960  AFTDRSIGFTHLTLGSNQRLEFLGDTVLQLISSEYLY 996



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 65/113 (57%), Gaps = 6/113 (5%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I+S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 969  THLTLGSNQRLEFLGDTVLQLISSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLG 1028

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +  + +YA+      + +LK    A+  EA +G+L++D G+   +Q     L+
Sbjct: 1029 MTKYAVYANP-----KADLKTKDRADLLEAFLGSLYVDKGLLFCEQFCHVCLF 1076


>gi|195474532|ref|XP_002089545.1| GE19158 [Drosophila yakuba]
 gi|194175646|gb|EDW89257.1| GE19158 [Drosophila yakuba]
          Length = 1328

 Score =  923 bits (2386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/818 (57%), Positives = 583/818 (71%), Gaps = 29/818 (3%)

Query: 219  PKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTK 278
            PK   E    L +W  N C    +  +K N L+  EAD  +E     W RS+PA+LYY +
Sbjct: 229  PKVETERDRLLRQWCSNFCEKPEDYVKKMNALS--EADAPVES----WVRSSPAELYYER 282

Query: 279  RTEDDSYECTQKTRTICDEFES-VIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCS 337
               ++      + + +C  FE  ++Q    V+E  P +             RK  +R C 
Sbjct: 283  TKSENEVRGRARLQKLCSLFEEELLQRAERVREKLPAY---------VPPPRKARRRVCK 333

Query: 338  HCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGP 397
            H   +   SS S S  DS       E+D  M EL  K  HP R+H +LW ND GEMNDGP
Sbjct: 334  HKHKSEACSSSSSSDDDSDEDAFKIEQDCCMEELSRKVQHPQRVHADLWHNDAGEMNDGP 393

Query: 398  LCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEH 457
            LCRCS+KSRR GIRH IY GE     C+P++NNA KL+HYR+++SPPTNFL   PT+I+H
Sbjct: 394  LCRCSAKSRRIGIRHGIYPGETGYKVCDPNSNNAGKLFHYRISISPPTNFLTKTPTIIKH 453

Query: 458  DNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFH 517
            D  EF+FEGFSL SH  L  LP CKVIRFNI+YTI Y EEK+P  FT+ + +LFF YLFH
Sbjct: 454  DEHEFLFEGFSLLSHVRLTDLPVCKVIRFNIEYTIEYEEEKMPENFTIHELDLFFKYLFH 513

Query: 518  EILELVDLDL----KSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPV 573
            E+LELVD +L     S +  + CP FH  PRFVR+L DNGKE+L M  VL +   +   +
Sbjct: 514  ELLELVDFNLMPNLASGSVDESCPAFHFFPRFVRDLPDNGKEVLAMVEVLRYLLDNSAQL 573

Query: 574  ISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDR---------ESETN 624
            +  +     + +S  EWQ++ D +KGM++ KPG KPC++RVDQLDR         + ET 
Sbjct: 574  VERQQLLHLNQISQSEWQNYVDFIKGMLVTKPGHKPCSLRVDQLDRNNSDLPECVDRETG 633

Query: 625  DIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQ 684
              +P  VHFG RP QL +AG+P++QK W+ YVK RHL+AN  K + +DKR+L  KEQRLQ
Sbjct: 634  ISHPAIVHFGIRPPQLSYAGNPEYQKAWREYVKFRHLMANMSKPSFKDKRKLEEKEQRLQ 693

Query: 685  EMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYK 744
            EMRT  +MKR +TVAISS GFYRTGIMCD+VQHAMLIPVL  HLRFH+SL++LE+ I Y+
Sbjct: 694  EMRTQGRMKRNITVAISSEGFYRTGIMCDVVQHAMLIPVLTGHLRFHKSLDLLEESIGYR 753

Query: 745  FQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLI 804
            F+NRYLLQLALTHPSY+EN+GTNPDHARNSL+NCG+RQPEYGDR+IH+ NTRKRGINTL+
Sbjct: 754  FKNRYLLQLALTHPSYKENYGTNPDHARNSLTNCGIRQPEYGDRKIHYMNTRKRGINTLV 813

Query: 805  NIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQN 864
            +IMS+ G+   T SNITHNERLEFLGDAVVEF++SIHLF +FP++EEGGLATYRAAIVQN
Sbjct: 814  SIMSRFGKDHETVSNITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQN 873

Query: 865  QHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS 924
            QHLA LAK++ LE+FMLYAHGSDLCHE+EL+HAMANCFEALMGAL LDGGI VAD+VF+ 
Sbjct: 874  QHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTD 933

Query: 925  VLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLA 984
             L++ +E     W   P+HPLQEQEP GDR  ++   +LK+L   E S G+ F HIRLLA
Sbjct: 934  ALFRQDEKLLSIWKNLPEHPLQEQEPLGDRSCIDSYRVLKELTKFEDSIGIKFKHIRLLA 993

Query: 985  RVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            R FT RS+G+T+LTLGSNQRLEFLGDTVLQLI S+YLY
Sbjct: 994  RAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLY 1031



 Score = 66.6 bits (161), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 64/113 (56%), Gaps = 6/113 (5%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 1004 THLTLGSNQRLEFLGDTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLG 1063

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +  + +YA+      + +LK    A+  EA +GAL++D G+   +Q     L+
Sbjct: 1064 MPKYAVYANP-----KADLKTKDRADLLEAFLGALYVDKGLLYCEQFCHVCLF 1111


>gi|194757473|ref|XP_001960989.1| GF13644 [Drosophila ananassae]
 gi|190622287|gb|EDV37811.1| GF13644 [Drosophila ananassae]
          Length = 1303

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/905 (54%), Positives = 608/905 (67%), Gaps = 51/905 (5%)

Query: 154  RSSSRSKNNGYSHRSENSKSSPTRTETN-------------LKRRRSRSKSRSESKSRSE 200
            R +S S N GY H S  ++S   R E+                 R  R    +   S + 
Sbjct: 122  RYNSHSTNQGYHHYSNYNQSYNKRYESRHGYESRHGHGHGHYAHRPPRGSEHNYYGSSAG 181

Query: 201  VPRQACARRSRSRSRILS-------PKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAM 253
                +   R R R R  S       PK   E    L +W  N C    +  +K N L+ M
Sbjct: 182  SDYSSRTYRERDRERTDSADKPKPKPKVETERDRLLRQWCSNYCEKPEDYVKKMNALSEM 241

Query: 254  EADQIIEEEKKIWTRSAPADLYYTKRTEDDSYECTQKTR--TICDEF-ESVIQNFVSVKE 310
            EA        + W RS+PAD YY +   D       + R   +CD F E ++Q    V+ 
Sbjct: 242  EA------PAESWVRSSPADPYYERIQIDGENRVQGRVRLQKLCDLFDEELLQRADRVRR 295

Query: 311  SKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMME 370
            + P +             RK  +R C H       SS S S  DS       E+D  M E
Sbjct: 296  TLPVY---------VPPPRKARRRVCKHKHKAEACSSSSSSDGDSDEDAFKIEQDCCMEE 346

Query: 371  LQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNN 430
            L  K  HP R+H +LW ND GEMNDGPLCRCS+KSRR GIRH IY GE     C+ ++NN
Sbjct: 347  LSRKLKHPQRVHADLWHNDAGEMNDGPLCRCSAKSRRIGIRHGIYPGETGYKLCDRNSNN 406

Query: 431  ADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQY 490
            A KLYHYR+++SPPTNFL   PT+I+HD  EF+FEGFSL SH  L  LP CKVIRFNI+Y
Sbjct: 407  AGKLYHYRISISPPTNFLTKTPTIIKHDEHEFLFEGFSLLSHVRLTDLPACKVIRFNIEY 466

Query: 491  TIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDL----KSANNKDGCPQFHIMPRFV 546
            TI Y EEK+P  FT+ + +LFF YLFHE+LELVD +L     + + ++ CP FH +PRFV
Sbjct: 467  TIEYEEEKMPENFTIHELDLFFKYLFHELLELVDFNLMPNVPAGSTEESCPAFHFLPRFV 526

Query: 547  RELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPG 606
            REL DNGKE+L M  VL +   +   ++  +     + +S +EWQ++ D +KGM++ KPG
Sbjct: 527  RELPDNGKEVLAMCEVLRYLLDNSAQLVERQQLLHLNQISQHEWQNYVDYIKGMLVTKPG 586

Query: 607  SKPCAMRVDQLDR---------ESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVK 657
             KPC++RVDQLDR         + ET   +P  VHFG RP QL +AG+P++QK W+ YVK
Sbjct: 587  HKPCSLRVDQLDRNNSDLPECIDPETGISHPAIVHFGIRPPQLSYAGNPEYQKAWREYVK 646

Query: 658  LRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQH 717
             RHL+AN  K + +DKR+L  KEQRLQEMRT  +MKR +TVAISS GFYRTGIMCD+VQH
Sbjct: 647  FRHLMANMSKPSFKDKRKLEEKEQRLQEMRTQGRMKRNITVAISSEGFYRTGIMCDIVQH 706

Query: 718  AMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSN 777
            AML+PVL  HLRFH+SL++LE+ I ++F+NRYLLQLALTHPSY+EN+GTNPDHARNSL+N
Sbjct: 707  AMLVPVLTGHLRFHKSLDLLEESIGHRFKNRYLLQLALTHPSYKENYGTNPDHARNSLTN 766

Query: 778  CGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFI 837
            CG+RQPEYGDR+IH+ NTRKRGINTL++IMS+ G+   T SNITHNERLEFLGDAVVEF+
Sbjct: 767  CGIRQPEYGDRKIHYMNTRKRGINTLVSIMSRFGKDHETVSNITHNERLEFLGDAVVEFL 826

Query: 838  TSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHA 897
            +SIHLF +FP++EEGGLATYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLCHE+EL+HA
Sbjct: 827  SSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHA 886

Query: 898  MANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWV 957
            MANCFEALMGAL LDGGI VAD+VF+  L++ +E     W   P+HPLQEQEP GDR  +
Sbjct: 887  MANCFEALMGALLLDGGIKVADEVFTDALFRQDEKLLNIWKNLPEHPLQEQEPLGDRGCI 946

Query: 958  EQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLIT 1017
            E   +LK+L   E S G+ F HIRLLAR FT RS+G+T+LTLGSNQRLEFLGDTVLQLI 
Sbjct: 947  ESYRVLKELTKFEESIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLIC 1006

Query: 1018 SDYLY 1022
            S+YLY
Sbjct: 1007 SEYLY 1011



 Score = 59.7 bits (143), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 62/113 (54%), Gaps = 9/113 (7%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 984  THLTLGSNQRLEFLGDTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLG 1043

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +     YA+      + +LK    A+  EA +GAL++D G+   +Q     L+
Sbjct: 1044 MPQ---YANP-----KADLKTKDRADLLEAFLGALYVDKGLLYCEQFCHVCLF 1088


>gi|427794217|gb|JAA62560.1| Putative ribonuclease, partial [Rhipicephalus pulchellus]
          Length = 1087

 Score =  920 bits (2378), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/854 (55%), Positives = 599/854 (70%), Gaps = 37/854 (4%)

Query: 152  RNRSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKSRSEVPRQACARRSR 211
            RNR    S+    +HR  + +S   R + +  RRR       E + RSE+  +    + R
Sbjct: 265  RNRHRDSSRPRSSNHRGASPRSHSRRLDRHTDRRRD---YHGERRKRSEIEEK---EKRR 318

Query: 212  SRSRILSPKRSGEALSNLDKWRMNNCSSEREMT--EKFNTLAAMEADQIIEEEKKIWTRS 269
            S SR  S +   ++  + D+       S+ EM+  ++     A E D + E  +  W RS
Sbjct: 319  STSRSFSTRTGRQSPEDGDQ-------SDDEMSAGQEPEPDDADEEDYLSESAR--WIRS 369

Query: 270  APADLYYTKRTEDDS--YECTQKTRTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRT 327
            +PA+LYY +R E  S     T K  T+ D+F   +    +  +SK Q  Y    +K K  
Sbjct: 370  SPAELYY-QRDEKVSGLVTGTPKLHTLQDKFRHDLVERAARVKSK-QEPYNPPPRKNKLC 427

Query: 328  NRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWF 387
            N K      SH  +NP  S  S + S+S            M EL++K+ HP RLHPELW+
Sbjct: 428  NPK------SHPIANPGTSDSSSNESESDDDNA-------MEELEVKRKHPYRLHPELWY 474

Query: 388  NDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNF 447
            ND GEMNDGPLCRCS+K++RSGIRH IY GE+    C+P+TNN  +L+HYR+ V+P TNF
Sbjct: 475  NDPGEMNDGPLCRCSAKAQRSGIRHGIYPGEEPLTSCDPNTNNIGRLHHYRIVVTPRTNF 534

Query: 448  LINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKD 507
             +  PT I+HD  EF FEGFSL SH PL KLPTC+VIRFNI+Y ++Y+EE++P  FTV+ 
Sbjct: 535  AMKCPTTIKHDGHEFTFEGFSLLSHWPLPKLPTCRVIRFNIEYAVLYLEEQMPENFTVEG 594

Query: 508  TELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFT 567
             ELF  YLF E+LE+VDLD ++  +KDGCP+FH MPRF R+L+DNGKELL +  VL +  
Sbjct: 595  LELFTRYLFFELLEMVDLDWRAHGDKDGCPRFHFMPRFARKLEDNGKELLSLNVVLNYLL 654

Query: 568  SSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRE--SETND 625
                P++S        + S  +WQ +AD VKGMI+V PG KPCA+RVDQLDRE  +    
Sbjct: 655  MKNAPLVSAAELPHLYETSQSKWQAYADQVKGMIVVNPGMKPCALRVDQLDRELCNAEGS 714

Query: 626  IYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQE 685
            + P+ VHFG RP QL +AG+P +QK W+ YVK RHL+ANKPK    D+ +L  KE +LQE
Sbjct: 715  VPPEIVHFGIRPPQLSYAGNPMYQKAWRDYVKFRHLLANKPKVLYTDRHKLLQKEAKLQE 774

Query: 686  MRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKF 745
            MR  S +KR VTV +SS GFYRTGIMCD+VQHA+L+PVL+CHLRFH+SL+ LE  I+ +F
Sbjct: 775  MRLKSNLKRDVTVVVSSEGFYRTGIMCDVVQHALLLPVLVCHLRFHKSLDFLESIIETEF 834

Query: 746  QNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLIN 805
            ++RYLLQLALTHPSYRENFGTNPDHARNSL+NCG+RQPEYGDRRIH+ NTRKRGINTLIN
Sbjct: 835  KDRYLLQLALTHPSYRENFGTNPDHARNSLTNCGIRQPEYGDRRIHYLNTRKRGINTLIN 894

Query: 806  IMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQ 865
            IMS+ GR+  T S+I HNERLEFLGDAVVEF++SIHLF +FPD+EEGGLATYRAAIVQNQ
Sbjct: 895  IMSRFGRQEETASSIGHNERLEFLGDAVVEFLSSIHLFFMFPDLEEGGLATYRAAIVQNQ 954

Query: 866  HLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSV 925
            HLA LAK++ LE +MLYAHGSDLCH++EL+HAMANCFEALMGALFLD GI VAD+VFSS 
Sbjct: 955  HLAVLAKKLELEKYMLYAHGSDLCHDLELRHAMANCFEALMGALFLDSGIKVADRVFSST 1014

Query: 926  LYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLAR 985
            L+ + ++R   W+ YP HPLQEQ P+GDR+W+   PLLK+L   E  +G+ FNHIRLLA+
Sbjct: 1015 LFSEPDLR-DVWINYPPHPLQEQVPEGDRKWISTVPLLKKLNEFEQLTGIEFNHIRLLAK 1073

Query: 986  VFTTRSMGYTNLTL 999
             FT RS+G+ NLTL
Sbjct: 1074 AFTHRSIGFNNLTL 1087


>gi|17137682|ref|NP_477436.1| drosha [Drosophila melanogaster]
 gi|4868118|gb|AAD31170.1| ribonuclease [Drosophila melanogaster]
 gi|7304132|gb|AAF59169.1| drosha [Drosophila melanogaster]
 gi|68051279|gb|AAY84903.1| LD20030p [Drosophila melanogaster]
          Length = 1327

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/818 (57%), Positives = 583/818 (71%), Gaps = 29/818 (3%)

Query: 219  PKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTK 278
            PK   E    L +W  N C    +  +K N L+  EAD  +E     W RS+PA+LYY +
Sbjct: 229  PKVETERDRLLRQWCSNFCEKPEDYVKKMNALS--EADAPVES----WVRSSPAELYYER 282

Query: 279  RTEDDSYECTQKTRTICDEF-ESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCS 337
               ++      + + +C  F E ++Q    V+E  P +             RK  +R C 
Sbjct: 283  TKSENEVRGRARLQKLCTLFDEELLQRAKRVREKLPVY---------VPPPRKARRRVCK 333

Query: 338  HCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGP 397
            H   +   SS S S  DS       E+D  M EL  K  HP R+H +LW ND GEMNDGP
Sbjct: 334  HKHKSEACSSSSSSDDDSDEDAFKIEQDCCMEELSRKVQHPQRVHADLWHNDAGEMNDGP 393

Query: 398  LCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEH 457
            LCRCS+KSRR GIRH IY GE     C+P++NNA KL+HYR+++SPPTNFL   PT+I+H
Sbjct: 394  LCRCSAKSRRIGIRHGIYPGETGYKLCDPNSNNAGKLFHYRISISPPTNFLTKTPTIIKH 453

Query: 458  DNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFH 517
            D  EF+FEGFSL SH  L  LP CKVIRFNI+YTI Y EEK+P  FT+ + ++FF YLFH
Sbjct: 454  DEHEFLFEGFSLLSHVRLSDLPVCKVIRFNIEYTIEYEEEKMPENFTIHELDIFFKYLFH 513

Query: 518  EILELVDLDL----KSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPV 573
            E+LELVD +L     S N ++ CP FH  PRFVR+L DNGKE+L M  VL +   +   +
Sbjct: 514  ELLELVDFNLMPNLPSGNVEESCPAFHFFPRFVRDLPDNGKEVLAMVEVLRYLLDNSAQL 573

Query: 574  ISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDR---------ESETN 624
            +  +     + +S  EWQ++ D +KGM++ KPG KPC++RVDQLDR         + ET 
Sbjct: 574  VERQQLLHLNQISQSEWQNYVDFIKGMLVTKPGYKPCSLRVDQLDRNNSDLPECVDRETG 633

Query: 625  DIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQ 684
              +P  VHFG    QL +AG+P++QK W+ YVK RHL+AN  K + +DKR+L  KEQRLQ
Sbjct: 634  ISHPAIVHFGICHPQLSYAGNPEYQKAWREYVKYRHLMANMSKPSFKDKRKLEEKEQRLQ 693

Query: 685  EMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYK 744
            EMRT  +MKR +TVAISS GFYRTGIMCD+VQHAMLIPVL  HLRFH+SL++LE+ I Y+
Sbjct: 694  EMRTQGRMKRNITVAISSEGFYRTGIMCDVVQHAMLIPVLTGHLRFHKSLDLLEESIGYR 753

Query: 745  FQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLI 804
            F+NRYLLQLALTHPSY+EN+GTNPDHARNSL+NCG+RQPEYGDR+IH+ NTRKRGINTL+
Sbjct: 754  FKNRYLLQLALTHPSYKENYGTNPDHARNSLTNCGIRQPEYGDRKIHYMNTRKRGINTLV 813

Query: 805  NIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQN 864
            +IMS+ G++  T SNITHNERLEFLGDAVVEF++SIHLF +FP++EEGGLATYRAAIVQN
Sbjct: 814  SIMSRFGKEHETVSNITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQN 873

Query: 865  QHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS 924
            QHLA LAK++ LE+FMLYAHGSDLCHE+EL+HAMANCFEALMGAL LDGGI VAD+VF+ 
Sbjct: 874  QHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTD 933

Query: 925  VLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLA 984
             L++ +E     W   P+HPLQEQEP GDR  ++   +LK+L   E S G+ F HIRLLA
Sbjct: 934  ALFRQDEKLLSIWKNLPEHPLQEQEPLGDRSCIDSYRVLKELTKFEDSIGIKFKHIRLLA 993

Query: 985  RVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            R FT RS+G+T+LTLGSNQRLEFLGDTVLQLI S+YLY
Sbjct: 994  RAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLY 1031



 Score = 66.2 bits (160), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 64/113 (56%), Gaps = 6/113 (5%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 1004 THLTLGSNQRLEFLGDTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLG 1063

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +  + +YA+      + +LK    A+  EA +GAL++D G+   +Q     L+
Sbjct: 1064 MPKYAVYANP-----KADLKTKDRADLLEAFLGALYVDKGLLYCEQFCHVCLF 1111


>gi|195332283|ref|XP_002032828.1| GM20991 [Drosophila sechellia]
 gi|194124798|gb|EDW46841.1| GM20991 [Drosophila sechellia]
          Length = 1310

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/884 (54%), Positives = 609/884 (68%), Gaps = 38/884 (4%)

Query: 153  NRSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKSRSEVPRQACARRSRS 212
             R +   ++  Y+HR       P  ++       +RS++  +   RS   R+      ++
Sbjct: 156  GRYAHEPRHGHYAHRQ------PKGSQHGYYGSAARSQASDDYSPRSYHERERNEPLEKT 209

Query: 213  RSRILSPKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPA 272
            R +   PK   E    L +W  N C    +  +K N L+  EAD  +E     W RS+PA
Sbjct: 210  RPK---PKVETERDRLLRQWCSNFCEKPEDYVKKMNALS--EADAPVES----WVRSSPA 260

Query: 273  DLYYTKRTEDDSYECTQKTRTICDEF-ESVIQNFVSVKESKPQFDYTANRKKIKRTNRKK 331
            +LYY +   ++      + + +C+ F E +++    V+E  P +             RK 
Sbjct: 261  ELYYERTKSENEVRGRARLQKLCNLFDEELLKRAERVREKLPVY---------VPPPRKA 311

Query: 332  IKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKG 391
             +R C H   +   SS S S +DS       E+D  M EL  K  HP R+H +LW ND G
Sbjct: 312  RRRVCKHKHKSEACSSSSSSDNDSDEDAFKIEQDCCMEELSRKVQHPQRVHADLWHNDAG 371

Query: 392  EMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINK 451
            EMNDGPLCRCS+KSRR GIRH IY GE     C+P++NNA KL+HYR+++SPPTNFL   
Sbjct: 372  EMNDGPLCRCSAKSRRIGIRHGIYPGETGYKLCDPNSNNAGKLFHYRISISPPTNFLTKT 431

Query: 452  PTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELF 511
            PT+I+HD  EF+FEGFSL SH  L  LP CKVIRFNI+YTI Y EEK+P  FT+ + +LF
Sbjct: 432  PTIIKHDEHEFLFEGFSLLSHVRLSDLPVCKVIRFNIEYTIEYEEEKMPENFTIHELDLF 491

Query: 512  FNYLFHEILELVDLDL----KSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFT 567
            F YLFHE+LELVD +L     S + ++ CP FH  PRFVR+L DNGKE+L M  VL +  
Sbjct: 492  FKYLFHELLELVDFNLMPNLASGSVEESCPAFHFFPRFVRDLPDNGKEVLAMVEVLRYLL 551

Query: 568  SSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDR-------- 619
             +   ++  +     + +S  EWQ++ D +KGM++ KPG KPC++RVDQLDR        
Sbjct: 552  DNSAQLVERQQLLHLNQISQSEWQNYVDFIKGMLVTKPGYKPCSLRVDQLDRNNSDLPEC 611

Query: 620  -ESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAA 678
             + ET   +P  VHFG    QL +AG+P++QK W+ YVK RHL+AN  K + +DKR+L  
Sbjct: 612  VDRETGISHPAIVHFGICHPQLSYAGNPEYQKAWREYVKYRHLMANMSKPSFKDKRKLEE 671

Query: 679  KEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLE 738
            KEQRLQEMRT  +MKR +TVAISS GFYRTGIMCD+VQHAMLIPVL  HLRFH+SL++LE
Sbjct: 672  KEQRLQEMRTQGRMKRNITVAISSEGFYRTGIMCDVVQHAMLIPVLTGHLRFHKSLDLLE 731

Query: 739  DRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKR 798
            + I Y+F+NRYLLQLALTHPSY+EN+GTNPDHARNSL+NCG+RQPEYGDR+IH+ NTRKR
Sbjct: 732  ESIGYRFKNRYLLQLALTHPSYKENYGTNPDHARNSLTNCGIRQPEYGDRKIHYMNTRKR 791

Query: 799  GINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYR 858
            GINTL++IMS+ G+   T SNITHNERLEFLGDAVVEF++SIHLF +FP++EEGGLATYR
Sbjct: 792  GINTLVSIMSRFGKDQETVSNITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYR 851

Query: 859  AAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
            AAIVQNQHLA LAK++ LE+FMLYAHGSDLCHE+EL+HAMANCFEALMGAL LDGGI VA
Sbjct: 852  AAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVA 911

Query: 919  DQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFN 978
            D+VF+  L++ +E     W   P+HPLQEQEP GDR  ++   +LK+L   E S G+ F 
Sbjct: 912  DEVFTDALFRQDEKLLSIWKNLPEHPLQEQEPLGDRSCIDSYRVLKELTKFEDSIGIKFK 971

Query: 979  HIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            HIRLLAR FT RS+G+T+LTLGSNQRLEFLGDTVLQLI S+YLY
Sbjct: 972  HIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLY 1015



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 6/113 (5%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 988  THLTLGSNQRLEFLGDTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLG 1047

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +  F +YA+      + +LK    A+  EA +GAL++D G+   +Q     L+
Sbjct: 1048 MPKFAVYANP-----KADLKTKDRADLLEAFLGALYVDKGLLYCEQFCHVCLF 1095


>gi|15291861|gb|AAK93199.1| LD29995p [Drosophila melanogaster]
          Length = 1071

 Score =  908 bits (2346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/786 (58%), Positives = 571/786 (72%), Gaps = 27/786 (3%)

Query: 251  AAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDSYECTQKTRTICDEF-ESVIQNFVSVK 309
            A  EAD  +E     W RS+PA+LYY +   ++      + + +C  F E ++Q    V+
Sbjct: 3    ALSEADAPVES----WVRSSPAELYYERTKSENEVRGRARLQKLCTLFDEELLQRAKRVR 58

Query: 310  ESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMM 369
            E  P   Y    +K +R       R C H   +   SS S S  DS       E+D  M 
Sbjct: 59   EKLPV--YVPPPRKARR-------RVCKHKHKSEACSSSSSSDDDSDEDAFKIEQDCCME 109

Query: 370  ELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTN 429
            EL  K  HP R+H +LW ND GEMNDGPLCRCS+KSRR GIRH IY GE     C+P++N
Sbjct: 110  ELSRKVQHPQRVHADLWHNDAGEMNDGPLCRCSAKSRRIGIRHGIYPGETGYKLCDPNSN 169

Query: 430  NADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQ 489
            NA KL+HYR+++SPPTNFL   PT+I+HD  EF+FEGFSL SH  L  LP CKVIRFNI+
Sbjct: 170  NAGKLFHYRISISPPTNFLTKTPTIIKHDEHEFLFEGFSLLSHVRLSDLPVCKVIRFNIE 229

Query: 490  YTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDL----KSANNKDGCPQFHIMPRF 545
            YTI Y EEK+P  FT+ + ++FF YLFHE+LELVD +L     S N ++ CP FH  PRF
Sbjct: 230  YTIEYEEEKMPENFTIHELDIFFKYLFHELLELVDFNLMPNLPSGNVEESCPAFHFFPRF 289

Query: 546  VRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKP 605
            VR+L DNGKE+L M  VL +   +   ++  +     + +S  EWQ++ D +KGM++ KP
Sbjct: 290  VRDLPDNGKEVLAMVEVLRYLLDNSAQLVERQQLLHLNQISQSEWQNYVDFIKGMLVTKP 349

Query: 606  GSKPCAMRVDQLDR---------ESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYV 656
            G KPC++RVDQLDR         + ET   +P  VHFG    QL +AG+P++QK W+ YV
Sbjct: 350  GYKPCSLRVDQLDRNNSDLPECVDRETGISHPAIVHFGICHPQLSYAGNPEYQKAWREYV 409

Query: 657  KLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQ 716
            K RHL+AN  K + +DKR+L  KEQRLQEMRT  +MKR +TVAISS GFYRTGIMCD+VQ
Sbjct: 410  KYRHLMANMSKPSFKDKRKLEEKEQRLQEMRTQGRMKRNITVAISSEGFYRTGIMCDVVQ 469

Query: 717  HAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLS 776
            HAMLIPVL  HLRFH+SL++LE+ I Y+F+NRYLLQLALTHPSY+EN+GTNPDHARNSL+
Sbjct: 470  HAMLIPVLTGHLRFHKSLDLLEESIGYRFKNRYLLQLALTHPSYKENYGTNPDHARNSLT 529

Query: 777  NCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEF 836
            NCG+RQPEYGDR+IH+ NTRKRGINTL++IMS+ G++  T SNITHNERLEFLGDAVVEF
Sbjct: 530  NCGIRQPEYGDRKIHYMNTRKRGINTLVSIMSRFGKEHETVSNITHNERLEFLGDAVVEF 589

Query: 837  ITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKH 896
            ++SIHLF +FP++EEGGLATYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLCHE+EL+H
Sbjct: 590  LSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRH 649

Query: 897  AMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQW 956
            AMANCFEALMGAL LDGGI VAD+VF+  L++ +E     W   P+HPLQEQEP GDR  
Sbjct: 650  AMANCFEALMGALLLDGGIKVADEVFTDALFRQDEKLLSIWKNLPEHPLQEQEPLGDRSC 709

Query: 957  VEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLI 1016
            ++   +LK+L   E S G+ F HIRLLAR FT RS+G+T+LTLGSNQRLEFLGDTVLQLI
Sbjct: 710  IDSYRVLKELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLI 769

Query: 1017 TSDYLY 1022
             S+YLY
Sbjct: 770  CSEYLY 775



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 64/113 (56%), Gaps = 6/113 (5%)

Query: 816 TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
           T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 748 THLTLGSNQRLEFLGDTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLG 807

Query: 876 LEDFMLYAHGSDLCHEVELKHA-MANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +  + +YA+      + +LK    A+  EA +GAL++D G+   +Q     L+
Sbjct: 808 MPKYAVYANP-----KADLKTKDRADLLEAFLGALYVDKGLLYCEQFCHVCLF 855


>gi|427780811|gb|JAA55857.1| Putative ribonuclease [Rhipicephalus pulchellus]
          Length = 886

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/632 (65%), Positives = 507/632 (80%), Gaps = 3/632 (0%)

Query: 393  MNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKP 452
            MNDGPLCRCS+K++RSGIRH IY GE+    C+P+TNN  +L+HYR+ V+P TNF +  P
Sbjct: 1    MNDGPLCRCSAKAQRSGIRHGIYPGEEPLTSCDPNTNNIGRLHHYRIVVTPRTNFAMKCP 60

Query: 453  TVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFF 512
            T I+HD  EF FEGFSL SH PL KLPTC+VIRFNI+Y ++Y+EE++P  FTV+  ELF 
Sbjct: 61   TTIKHDGHEFTFEGFSLLSHWPLPKLPTCRVIRFNIEYAVLYLEEQMPENFTVEGLELFT 120

Query: 513  NYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVP 572
             YLF E+LE+VDLD ++  +KDGCP+FH MPRF R+L+DNGKELL +  VL +      P
Sbjct: 121  RYLFFELLEMVDLDWRAHGDKDGCPRFHFMPRFARKLEDNGKELLSLNVVLNYLLMKNAP 180

Query: 573  VISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRE--SETNDIYPDA 630
            ++S        + S  +WQ +AD VKGMI+V PG KPCA+RVDQLDRE  +    + P+ 
Sbjct: 181  LVSAAELPHLYETSQSKWQAYADQVKGMIVVNPGMKPCALRVDQLDRELCNAEGSVPPEI 240

Query: 631  VHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNS 690
            VHFG RP QL +AG+P +QK W+ YVK RHL+ANKPK    D+ +L  KE +LQEMR  S
Sbjct: 241  VHFGIRPPQLSYAGNPMYQKAWRDYVKFRHLLANKPKVLYTDRHKLLQKEAKLQEMRLKS 300

Query: 691  KMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYL 750
             +KR VTV +SS GFYRTGIMCD+VQHA+L+PVL+CHLRFH+SL+ LE  I+ +F++RYL
Sbjct: 301  NLKRDVTVVVSSEGFYRTGIMCDVVQHALLLPVLVCHLRFHKSLDFLESIIETEFKDRYL 360

Query: 751  LQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKL 810
            LQLALTHPSYRENFGTNPDHARNSL+NCG+RQPEYGDRRIH+ NTRKRGINTLINIMS+ 
Sbjct: 361  LQLALTHPSYRENFGTNPDHARNSLTNCGIRQPEYGDRRIHYLNTRKRGINTLINIMSRF 420

Query: 811  GRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
            GR+  T S+I HNERLEFLGDAVVEF++SIHLF +FPD+EEGGLATYRAAIVQNQHLA L
Sbjct: 421  GRQEETASSIGHNERLEFLGDAVVEFLSSIHLFFMFPDLEEGGLATYRAAIVQNQHLAVL 480

Query: 871  AKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDN 930
            AK++ LE +MLYAHGSDLCH++EL+HAMANCFEALMGALFLD GI VAD+VFSS L+ + 
Sbjct: 481  AKKLELEKYMLYAHGSDLCHDLELRHAMANCFEALMGALFLDSGIKVADRVFSSTLFSEP 540

Query: 931  EVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTR 990
            ++R   W+ YP HPLQEQ P+GDR+W+   PLLK+L   E  +G+ FNHIRLLA+ FT R
Sbjct: 541  DLR-DVWINYPPHPLQEQVPEGDRKWISTVPLLKKLNEFEQLTGIEFNHIRLLAKAFTHR 599

Query: 991  SMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            S+G+ NLTLGSNQRLEFLGDTVLQL+ S+YLY
Sbjct: 600  SIGFNNLTLGSNQRLEFLGDTVLQLVASEYLY 631



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 7/106 (6%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           N+RLEFLGD V++ + S +L+  FP+  EG L+  R+++V N+  A +   +G+ DF +Y
Sbjct: 611 NQRLEFLGDTVLQLVASEYLYKYFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMVDFTIY 670

Query: 883 AHGSDLCHEVELKHA-MANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +      + ELK    A+  EA +GALF+D G++  + VF  V +
Sbjct: 671 PYA-----KAELKTKDRADILEAFLGALFVDKGLEYCN-VFCQVCF 710


>gi|195581370|ref|XP_002080507.1| GD10519 [Drosophila simulans]
 gi|194192516|gb|EDX06092.1| GD10519 [Drosophila simulans]
          Length = 1310

 Score =  880 bits (2275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/884 (52%), Positives = 594/884 (67%), Gaps = 54/884 (6%)

Query: 153  NRSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKSRSEVPRQACARRSRS 212
             R +   ++  Y+HR       P  ++       +RS++  +   RS   R+      ++
Sbjct: 172  GRYAHEPRHGHYAHRQ------PKGSQHGYYGSAARSQASDDYSPRSYHERERNEPLEKT 225

Query: 213  RSRILSPKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPA 272
            R +   PK   E    L +W  N C    +  +K N L+  EAD  +E     W RS+PA
Sbjct: 226  RPK---PKVETERDRLLRQWCSNFCEKPEDYVKKMNALS--EADAPVES----WVRSSPA 276

Query: 273  DLYYTKRTEDDSYECTQKTRTICDEF-ESVIQNFVSVKESKPQFDYTANRKKIKRTNRKK 331
            +LYY +   ++      + + +C+ F E +++    V+E  P +             RK 
Sbjct: 277  ELYYERTKSENEVRGRARLQKLCNLFDEELLKRAERVREKLPVY---------VPPPRKA 327

Query: 332  IKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKG 391
             +R C H   +   SS S S +DS       E+D  M EL  K  HP R+H +LW ND G
Sbjct: 328  RRRVCKHKHKSEACSSSSSSDNDSDEDAFKIEQDCCMEELSRKVQHPQRVHADLWHNDAG 387

Query: 392  EMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINK 451
            EMNDGPLCRCS+KSRR GIRH IY GE     C+P++NNA KL+HYR+++SPPTNFL   
Sbjct: 388  EMNDGPLCRCSAKSRRIGIRHGIYPGETGYKLCDPNSNNAGKLFHYRISISPPTNFLTKT 447

Query: 452  PTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELF 511
            PT+I+HD  EF+FEGFSL SH  L  LP CKVIRFNI+YTI Y EEK+P  FT+ + +LF
Sbjct: 448  PTIIKHDEHEFLFEGFSLLSHVRLSDLPVCKVIRFNIEYTIEYEEEKMPENFTIHELDLF 507

Query: 512  FNYLFHEILELVDLDL----KSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFT 567
            F YLFHE+LELVD +L     S + ++ CP FH  PRFVR+L DN KE+L M  VL +  
Sbjct: 508  FKYLFHELLELVDFNLMPNLASGSVEESCPAFHFFPRFVRDLPDNRKEVLAMVEVLRYLW 567

Query: 568  SSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDR-------- 619
             +   ++  +     + +S  EWQ++ D +KGM++ KPG KPC+MRVDQLDR        
Sbjct: 568  DNSAQLVDRQQLLHLNQISQSEWQNYVDFIKGMLVTKPGYKPCSMRVDQLDRNNSDLPEC 627

Query: 620  -ESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAA 678
             + ET   +P  VHFG    QL +AG+P++QK W+ Y                DKR+L  
Sbjct: 628  VDRETGISHPAIVHFGICHPQLSYAGNPEYQKAWREY----------------DKRKLEE 671

Query: 679  KEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLE 738
            KEQRLQEMRT  +MKR +TVAISS GFYRTGIMCD+VQHAMLIPVL  HLRFH+SL++LE
Sbjct: 672  KEQRLQEMRTQGRMKRNITVAISSEGFYRTGIMCDVVQHAMLIPVLTGHLRFHKSLDLLE 731

Query: 739  DRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKR 798
            + I Y+F+NRY+LQLA  HPSY+E +GTNPDHARNSL+NCG+RQPEYGDR+IH+ NTRKR
Sbjct: 732  ESIGYRFKNRYILQLANRHPSYKEKYGTNPDHARNSLTNCGIRQPEYGDRKIHYMNTRKR 791

Query: 799  GINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYR 858
            GINTL++IMS+ G+   T SNITHNERLEFLGDAVVEF++SIHLF +FP++EEGGLATYR
Sbjct: 792  GINTLVSIMSRFGKDQETVSNITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYR 851

Query: 859  AAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
            AAIVQNQHLA LAK++ LE+FMLYAHGSDLCHE+EL+HAMANCFEALMGAL LDGGI VA
Sbjct: 852  AAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVA 911

Query: 919  DQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFN 978
            D+VF+  L++ +E     W   P+HPLQEQEP GDR  ++   +LK+L   E S G+ F 
Sbjct: 912  DEVFTDALFRQDEKLLSIWKNLPEHPLQEQEPLGDRSCIDSYRVLKELTKFEDSIGIKFK 971

Query: 979  HIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            HIRLLAR FT RS+G+T+LTLGSNQRLEFLGDTVLQLI S+YLY
Sbjct: 972  HIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLY 1015



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 64/113 (56%), Gaps = 6/113 (5%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +  N+RLEFLGD V++ I S +L+  FP+  EG L+  R+++V N+  A +   +G
Sbjct: 988  THLTLGSNQRLEFLGDTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLG 1047

Query: 876  LEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +  + +YA+      + +LK    A+  EA +GAL++D G+   +Q     L+
Sbjct: 1048 MPKYAVYANP-----KADLKTKDRADLLEAFLGALYVDKGLLYCEQFCHVCLF 1095


>gi|405952841|gb|EKC20603.1| Ribonuclease 3 [Crassostrea gigas]
          Length = 1354

 Score =  867 bits (2239), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/779 (53%), Positives = 543/779 (69%), Gaps = 11/779 (1%)

Query: 247  FNTLAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDSYECTQKTRTICDEFES-VIQNF 305
            ++ L   +  ++ EE    W R +PADLY+ +  E   +  T++ + + ++FE+ ++Q  
Sbjct: 328  YDVLNGQDEIELPEEIIPAWLRCSPADLYFRRNNETGCFNATKRMQDLVEKFETDLVQRS 387

Query: 306  VSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEED 365
              V+ESKP  +           +      + S  +S+   S                   
Sbjct: 388  TRVRESKPPVEIPKYPVMESHHHHHHSGSESSSSSSSEEDSEEEGEEDSKEE-------- 439

Query: 366  NWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCN 425
             W+  L  ++ HP RLH +LW+ND+GE+NDGPLC+CS KS++SGIRH+ Y GE     C+
Sbjct: 440  EWLDALNKRKKHPYRLHDDLWYNDQGELNDGPLCKCSLKSQKSGIRHSKYPGEKAIPRCD 499

Query: 426  PDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIR 485
            P +NN+DKL+HY++T+SPPTNFL   PT+IEHDN E+IFEGFSL SH  LE +PTC+VIR
Sbjct: 500  PHSNNSDKLFHYKITMSPPTNFLTKAPTIIEHDNHEYIFEGFSLLSHEKLENIPTCRVIR 559

Query: 486  FNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRF 545
            FNI YTI +IEE +P+ FTVK  +LF  +LF EILELVDLD K     + C +FH+MPRF
Sbjct: 560  FNIDYTIHFIEEPIPDNFTVKSLDLFQQFLFDEILELVDLDWKGPGTNEHCNRFHLMPRF 619

Query: 546  VRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKP 605
             R L +NGKE+L M  VL +   S  P++ E           +EWQ F D V+G ++  P
Sbjct: 620  ARLLPENGKEILSMNDVLTYLLKSSKPLLEETELAQILKYDVHEWQGFVDEVRGSVVTFP 679

Query: 606  GSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVA 663
            G KP ++R+DQLDR  + N +  +P  +HFG RP QL +AG P++Q+ WK YVK +HL+ 
Sbjct: 680  GKKPSSIRIDQLDRNQDENHLIQFPLIIHFGIRPAQLSYAGDPNYQRTWKQYVKFKHLLN 739

Query: 664  NKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPV 723
            +KPK T  DK++L AKE+ LQ++R  S MKR VTV ISS GF RTGI  D+ QHAML+PV
Sbjct: 740  SKPKVTFTDKQKLEAKEKYLQDLRMKSSMKREVTVEISSEGFLRTGIRSDITQHAMLMPV 799

Query: 724  LICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQP 783
            L+ HLRFH  +  L+  I Y+F++  LLQLALTH SY+ N+GTNPDHARNSLSNCGVRQ 
Sbjct: 800  LLGHLRFHLCIRQLQKEINYQFKDPQLLQLALTHTSYKVNYGTNPDHARNSLSNCGVRQL 859

Query: 784  EYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLF 843
            EYGDR+IH+ +TRK+GIN LINIMS+LG++    S I HNERLE+LGDAVVEFITS+HLF
Sbjct: 860  EYGDRKIHYVHTRKKGINILINIMSRLGKQDECSSEIPHNERLEYLGDAVVEFITSVHLF 919

Query: 844  HVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFE 903
            ++FP +EEGGL TYRAA+VQNQ LA LAK++ LE++MLYAHG DLCHE +LKHAMANCFE
Sbjct: 920  YMFPYLEEGGLTTYRAALVQNQQLAVLAKKLHLENYMLYAHGPDLCHESDLKHAMANCFE 979

Query: 904  ALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLL 963
            AL+GAL++DGGID+AD+VF+  L+KD +     W   P H LQE EP  DR WVE SP L
Sbjct: 980  ALLGALYMDGGIDLADKVFAETLFKDEDKYLNIWRDLPLHVLQEDEPGSDRHWVESSPTL 1039

Query: 964  KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            ++L   E S GV F+HIRLLAR FT RS+GY +LTLG NQRLEFLGDTVLQL+ SDYL+
Sbjct: 1040 QKLVKFEESIGVKFDHIRLLARAFTLRSVGYNHLTLGHNQRLEFLGDTVLQLVASDYLF 1098



 Score = 70.5 bits (171), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 1/98 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+RLEFLGD V++ + S +LF  FPD  EG L+  R+++V N+  + +   +G+ D+
Sbjct: 1075 LGHNQRLEFLGDTVLQLVASDYLFKHFPDHHEGHLSLLRSSLVNNRTQSIVCDDLGISDY 1134

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDV 917
            ++++       + + K   A+  EA +GAL++D  ++V
Sbjct: 1135 VIFSDSKGEKQDKKTKEK-ADLLEAFIGALYVDKDVEV 1171


>gi|348503355|ref|XP_003439230.1| PREDICTED: ribonuclease 3-like [Oreochromis niloticus]
          Length = 1347

 Score =  838 bits (2166), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/887 (49%), Positives = 587/887 (66%), Gaps = 34/887 (3%)

Query: 152  RNRSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKSRSEVPRQ------A 205
            R+RS  RS+   Y HR      SP R   + KR RSRS SR   + R E  R       +
Sbjct: 268  RHRSRDRSRER-YRHRDSRRSQSPDR---HRKRPRSRSTSRDRKRGRWEEERDRRSESSS 323

Query: 206  CARRSRSRSRILSPKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKI 265
               R RS S I S + S EA S+ D+ R      ER+   +       +  +  +  K  
Sbjct: 324  GLSRERSFSAIRS-RDSDEAFSDRDRERERERERERDREREKVKEKGDDEKEEEDLLKPA 382

Query: 266  WTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQNFVS-VKESKPQFDYTAN 320
            W R   A+ YY+     +  D +   T K R + + FE  + N     K ++P+++    
Sbjct: 383  WIRCTHAENYYSNDPMDQVGDSTVVGTSKLRDLYERFEEELGNRQERAKAARPKWE---- 438

Query: 321  RKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDR 380
                      K K       S+      SE    + S   D+E  + + E++ K+ HPDR
Sbjct: 439  --------PPKTKLDEDPDDSSSDSDCESEGEGSTCSSSSDSEVFDVIAEIKRKKAHPDR 490

Query: 381  LHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVT 440
            LH ELW+ND GEMNDGPLC+CS+K+RR+GIRH+IY GE+    C P  NNA KL+HYR+T
Sbjct: 491  LHEELWYNDPGEMNDGPLCKCSAKARRTGIRHSIYPGEEPVKRCRPMNNNAGKLFHYRIT 550

Query: 441  VSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVP 500
            VSPPTNFL ++PTVIE+D+ E++FEGFSLFSH PL  +P C+VIRFNI YTI +IEE  P
Sbjct: 551  VSPPTNFLTDRPTVIEYDDHEYLFEGFSLFSHTPLTNIPLCRVIRFNIDYTIHFIEEMAP 610

Query: 501  NGFTVKDTELFFNYLFHEILELVDLDL---KSANNKDGCPQFHIMPRFVRELKDNGKELL 557
              + V+  ELF +YLF +ILEL D +L   +S     GCP+FH MPRFVR L D GKE+L
Sbjct: 611  ENYCVRGLELFASYLFRDILELYDWNLTDPESDGEVSGCPRFHFMPRFVRFLPDGGKEVL 670

Query: 558  PMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQL 617
             M++VL +   S  P++ E+            WQ +A+  KGMI+  PG KP ++R+DQL
Sbjct: 671  SMHQVLLYLLRSSKPLVPEEEIADMLQWEELAWQKYAEECKGMIVTNPGMKPSSVRIDQL 730

Query: 618  DRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRR 675
            DRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK++
Sbjct: 731  DREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVRQIDKQK 790

Query: 676  LAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLN 735
            +  +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ L 
Sbjct: 791  MTQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLM 850

Query: 736  VLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNT 795
             L+  I Y F+ R LLQLALTHPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H    
Sbjct: 851  HLDKLIAYVFKERCLLQLALTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMYM 910

Query: 796  RKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLA 855
            RK+GINTLINIMS+LG+   + S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGGLA
Sbjct: 911  RKKGINTLINIMSRLGQDDPSPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLA 970

Query: 856  TYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGI 915
            TYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEALMGA++L+GG+
Sbjct: 971  TYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALMGAVYLEGGL 1030

Query: 916  DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGV 975
            + A Q+F  +L+   ++R + W+ YP HPLQ QEP  DRQ +E SP+L++L   E S GV
Sbjct: 1031 EEARQLFGRLLFNSEDLR-EVWLNYPPHPLQVQEPQTDRQLIETSPVLQKLTQFEESIGV 1089

Query: 976  IFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            +F H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1090 LFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1136



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 60/97 (61%), Gaps = 1/97 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G+++F
Sbjct: 1113 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEF 1172

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
             +    +     +  K  +A+  E+ + AL++D  ++
Sbjct: 1173 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLE 1208


>gi|334325445|ref|XP_001375491.2| PREDICTED: ribonuclease 3 [Monodelphis domestica]
          Length = 1362

 Score =  837 bits (2161), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/953 (46%), Positives = 608/953 (63%), Gaps = 77/953 (8%)

Query: 122  PTQLHLKHPLAGQTNIMSRSMHRDDESNQRRNRSSSRSKNNGYSHRSENSKSSPTRTETN 181
            PTQ  ++ P + +     RS H DD      +R    S  +G  HRS++      RT + 
Sbjct: 198  PTQYQVEKP-SSERRSPERSKHYDD------HRHREHSHGHGDRHRSDSHGDRRDRTRSP 250

Query: 182  LKRRRSRSKSRSESKSRSEVPRQACA---------------------------------- 207
             +RR+  S+ RS+       PR                                      
Sbjct: 251  DRRRQESSRHRSDYDRGRTPPRHRSYEHSRERERDRDRDRHRHRESRRSPSPDRSYKKEY 310

Query: 208  RRSRSRSRILSPKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQII------EE 261
            +R+ SRS     KR+     + D+W ++N +S +E  + + ++   E ++I+      EE
Sbjct: 311  KRTSSRSPSREKKRT-RWEDDRDRW-VDNQNSGKE--KSYTSIKDKEPEEIMPDKNEEEE 366

Query: 262  E---KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQ 314
            E   K +W R   ++ YY+     +  D +   T + R + ++FE              +
Sbjct: 367  EDLLKPVWIRCTHSESYYSNDPMDQVGDSTVVGTSRLRDLYEKFEE-------------E 413

Query: 315  FDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLK 374
                  + K  R   +  K K      + + S        S S   D++  + + E++ K
Sbjct: 414  LGKRQAKAKAVRPPWEPPKTKLDEDLDSSSESDCDSDDDSSCSSSSDSDVFDVIAEIKRK 473

Query: 375  QNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKL 434
            + HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L
Sbjct: 474  KAHPDRLHEELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEPIKPCRPMTNNAGRL 533

Query: 435  YHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVY 494
            YHYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +
Sbjct: 534  YHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHF 593

Query: 495  IEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSA---NNKDGCPQFHIMPRFVRELKD 551
            IEE +P  F VK  ELF  YLF +ILEL D +L      NN   CP+FH MPRFVR L D
Sbjct: 594  IEEMMPENFCVKGLELFSLYLFRDILELYDWNLTGPSFENNSSCCPRFHFMPRFVRFLPD 653

Query: 552  NGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCA 611
             GKE+L M+++L +       ++ E+   +       EWQ +A+  KGMI+  PG KP +
Sbjct: 654  GGKEVLSMHQILLYLLRCNKALVPEEEIANMLQWEELEWQKYAEECKGMIVNNPGMKPSS 713

Query: 612  MRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRT 669
            +R+DQLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK  
Sbjct: 714  VRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVK 773

Query: 670  AEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLR 729
              DK++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R
Sbjct: 774  QADKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIR 833

Query: 730  FHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRR 789
            +H+ L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR+
Sbjct: 834  YHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRK 893

Query: 790  IHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDI 849
            +H  + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL+++FP +
Sbjct: 894  VHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSL 953

Query: 850  EEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGAL 909
            EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA+
Sbjct: 954  EEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAV 1013

Query: 910  FLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYL 969
            +L+G ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   
Sbjct: 1014 YLEGSLEEAKQLFGRLLFNDKDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEF 1072

Query: 970  EYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1073 EEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1125



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1102 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1161

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1162 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1207


>gi|397495447|ref|XP_003818566.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3 [Pan paniscus]
          Length = 1343

 Score =  837 bits (2161), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/928 (46%), Positives = 598/928 (64%), Gaps = 76/928 (8%)

Query: 143  HRDDESNQ-RRNRSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKSRSE- 200
            HRD    +  R+RS  R +      RS + +   +R  ++  R R+ S+ RS  +SRS  
Sbjct: 233  HRDHSHGRGERHRSLDRRERG----RSPDRRRQDSRYRSDYDRGRTPSRHRSYERSRSYG 288

Query: 201  ---VPRQACARRSRSRSRILSPKRSGEALSNLDKWR-----MNNCSSEREMT-------- 244
               VP  A            +P+  GE + N D W      +N+ S  RE          
Sbjct: 289  LSVVPEPAGC----------TPELPGEIIKNTDSWAPPLEIVNHRSPSREKKRARWEEEK 338

Query: 245  ------------EKFNTLAAMEADQIIEEE---------KKIWTRSAPADLYYTK----R 279
                        + + ++   E ++ + ++         K +W R   ++ YY+     +
Sbjct: 339  DRWSDNQSSGKDKNYTSIKEKEPEETMPDKNEEEEEELLKPVWIRCTHSENYYSSDPMDQ 398

Query: 280  TEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHC 339
              D +   T + R + D+FE              +      + K  R   +  K K    
Sbjct: 399  VGDSTVVGTSRLRDLYDKFEE-------------ELGSRQEKAKAARPPWEPPKTKLDED 445

Query: 340  ASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLC 399
              + + S        + S   D+E  + + E++ K+ HPDRLH ELW+ND G+MNDGPLC
Sbjct: 446  LESSSESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDGPLC 505

Query: 400  RCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDN 459
            +CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR+TVSPPTNFL ++PTVIE+D+
Sbjct: 506  KCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIEYDD 565

Query: 460  QEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEI 519
             E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE +P  F VK  ELF  +LF +I
Sbjct: 566  HEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLFRDI 625

Query: 520  LELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISE 576
            LEL D +LK    +D    CP+FH MPRFVR L D GKE+L M+++L +       ++ E
Sbjct: 626  LELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKALVPE 685

Query: 577  KLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDAVHFG 634
            +   +       EWQ +A+  KGMI+  PG+KP ++R+DQLDRE    D+  +P  VHFG
Sbjct: 686  EEIANMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIVHFG 745

Query: 635  SRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKR 694
             RP QL +AG P +QKLWK YVKLRHL+AN PK    DK++LA +E+ LQ++R  + M+R
Sbjct: 746  IRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNTMRR 805

Query: 695  GVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLA 754
             VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ L  L+  I Y FQ+R LLQLA
Sbjct: 806  EVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLA 865

Query: 755  LTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKV 814
            +THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  + RK+GINTLINIMS+LG+  
Sbjct: 866  MTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQDD 925

Query: 815  ATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI 874
             T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++
Sbjct: 926  PTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKL 985

Query: 875  GLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRF 934
             L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G ++ A Q+F  +L+ D ++R 
Sbjct: 986  ELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR- 1044

Query: 935  KQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGY 994
            + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT R++G+
Sbjct: 1045 EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGF 1104

Query: 995  TNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
             +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1105 NHLTLGHNQRMEFLGDSIMQLVATEYLF 1132



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1109 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1168

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1169 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1214


>gi|395510877|ref|XP_003759694.1| PREDICTED: ribonuclease 3 [Sarcophilus harrisii]
          Length = 1336

 Score =  835 bits (2158), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/953 (46%), Positives = 607/953 (63%), Gaps = 77/953 (8%)

Query: 122  PTQLHLKHPLAGQTNIMSRSMHRDDESNQRRNRSSSRSKNNGYSHRSENSKSSPTRTETN 181
            PTQ  ++ P + +     RS H DD      +R    S  +G  HRS++      RT + 
Sbjct: 198  PTQYQVEKP-SSERRSPERSKHYDD------HRHREHSHGHGDRHRSDSHGDRRDRTRSP 250

Query: 182  LKRRRSRSKSRSESKSRSEVPRQACA---------------------------------- 207
             +RR+  S+ RS+       PR                                      
Sbjct: 251  DRRRQESSRHRSDYDRGRTPPRHRSYEHSRERERDRDRDRHRHRESRRSPSPDRSYKKEY 310

Query: 208  RRSRSRSRILSPKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQII------EE 261
            +R+ SRS     KR+     + D+W ++N +S +E +  + ++   E + I+      EE
Sbjct: 311  KRTSSRSPSREKKRT-RWEDDRDRW-LDNQNSGKEKS--YTSIKDKEPEDIMPDKNEEEE 366

Query: 262  E---KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQ 314
            E   K +W R   ++ YY+     +  D +   T + R + ++FE              +
Sbjct: 367  EDLLKPVWIRCTHSESYYSNDPMDQVGDSTVVGTSRLRDLYEKFEE-------------E 413

Query: 315  FDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLK 374
                  + K  R   +  K K      + + S        S S   D++  + + E++ K
Sbjct: 414  LGKRQAKAKAVRPPWEPPKTKLDEDLDSSSESDCDSDDDSSCSSSSDSDVFDVIAEIKRK 473

Query: 375  QNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKL 434
            + HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L
Sbjct: 474  KAHPDRLHEELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEPIKPCRPMTNNAGRL 533

Query: 435  YHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVY 494
            YHYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +
Sbjct: 534  YHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHF 593

Query: 495  IEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSA---NNKDGCPQFHIMPRFVRELKD 551
            IEE +P  F VK  ELF  YLF +ILEL D +L      NN   CP+FH MPRFVR L D
Sbjct: 594  IEEMMPENFCVKGLELFSLYLFRDILELYDWNLTGPSFENNSSCCPRFHFMPRFVRFLPD 653

Query: 552  NGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCA 611
             GKE+L M+++L +       ++ E+   +       EWQ +A+  KGMI+  PG KP +
Sbjct: 654  GGKEVLSMHQILLYLLRCNKALVPEEEIANMLQWEELEWQKYAEECKGMIVNNPGMKPSS 713

Query: 612  MRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRT 669
            +R+DQLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK  
Sbjct: 714  VRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVK 773

Query: 670  AEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLR 729
              DK++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R
Sbjct: 774  QADKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIR 833

Query: 730  FHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRR 789
            +H+ L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR+
Sbjct: 834  YHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRK 893

Query: 790  IHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDI 849
            +H  + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL+++FP +
Sbjct: 894  VHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSL 953

Query: 850  EEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGAL 909
            EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA+
Sbjct: 954  EEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAV 1013

Query: 910  FLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYL 969
            +L+G ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   
Sbjct: 1014 YLEGSLEEAKQLFGRLLFNDKDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEF 1072

Query: 970  EYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1073 EEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1125



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1102 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1161

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1162 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1207


>gi|354479102|ref|XP_003501752.1| PREDICTED: ribonuclease 3-like [Cricetulus griseus]
 gi|344245508|gb|EGW01612.1| Ribonuclease 3 [Cricetulus griseus]
          Length = 1372

 Score =  832 bits (2150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/769 (52%), Positives = 543/769 (70%), Gaps = 23/769 (2%)

Query: 263  KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYT 318
            K +W R   ++ YY+     +  D +   T + R + D+FE  + N              
Sbjct: 407  KPVWIRCTHSESYYSSDPMDQVGDSTVVGTSRLRDLYDKFEEELGN-------------R 453

Query: 319  ANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHP 378
              + K  R   +  K K      + + S        + S   D+E  + + E++ K+ HP
Sbjct: 454  QEKAKAARPPWEPPKTKLDEDLESSSESECESDEESTCSSSSDSEVFDVIAEIKRKKAHP 513

Query: 379  DRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYR 438
            DRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR
Sbjct: 514  DRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYR 573

Query: 439  VTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEK 498
            +TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE 
Sbjct: 574  ITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEM 633

Query: 499  VPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKE 555
            +P  F VK  ELF  +LF +ILEL D +LK    +D    CP+FH MPRFVR L D GKE
Sbjct: 634  MPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKE 693

Query: 556  LLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVD 615
            +L M+++L +       ++ E+   +       EWQ +A+  KGMI+  PG+KP ++R+D
Sbjct: 694  VLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRID 753

Query: 616  QLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDK 673
            QLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK
Sbjct: 754  QLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDK 813

Query: 674  RRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRS 733
            ++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ 
Sbjct: 814  QKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQC 873

Query: 734  LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
            L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  
Sbjct: 874  LMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHM 933

Query: 794  NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
            + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGG
Sbjct: 934  HMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGG 993

Query: 854  LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
            LATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G
Sbjct: 994  LATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEG 1053

Query: 914  GIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSS 973
             ++ A Q+F  +L+ D ++R + W++YP HPLQ QEP+ DRQ +E SP+L++L   E + 
Sbjct: 1054 SLEEARQLFGRLLFNDPDLR-EVWLHYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAI 1112

Query: 974  GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1113 GVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1161



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1138 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1197

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1198 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1243


>gi|169261416|gb|ACA52288.1| nuclear ribonuclease III protein [Xenopus (Silurana) tropicalis]
          Length = 1325

 Score =  831 bits (2147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/770 (52%), Positives = 537/770 (69%), Gaps = 27/770 (3%)

Query: 263  KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYT 318
            K +W R   ++ YYT     +  D +   T + R + D+FE  +                
Sbjct: 366  KPVWVRCTHSESYYTSDPMDQVGDSTVVGTSRLRDLYDKFEEEL---------------- 409

Query: 319  ANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEED-NWMMELQLKQNH 377
              R+   R  R   +   +    +   SS SE  +D S       E  + + E++ K+ H
Sbjct: 410  GKRQATARAARPAWEPPKTKLDEDLESSSDSECETDDSCSSSSDSEVFDVIAEIKRKKAH 469

Query: 378  PDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHY 437
            PDRLH ELW+ND G+MNDGPLC+CS K+RR+GIRH+IY GE+    C P TNNA +L+HY
Sbjct: 470  PDRLHEELWYNDPGQMNDGPLCKCSLKARRTGIRHSIYPGEEPIKACRPMTNNAGRLFHY 529

Query: 438  RVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEE 497
            R+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+FSH PL  +P CKVIRFNI YTI +IEE
Sbjct: 530  RITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFSHSPLTNVPLCKVIRFNIDYTIHFIEE 589

Query: 498  KVPNGFTVKDTELFFNYLFHEILELVD---LDLKSANNKDGCPQFHIMPRFVRELKDNGK 554
             +P  F VK  ELF ++L+ +ILEL D   +D    NN   CPQFH MPRFVR L D GK
Sbjct: 590  MMPEHFCVKGLELFSSHLYKDILELHDWNLMDPSVENNDANCPQFHFMPRFVRFLPDGGK 649

Query: 555  ELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRV 614
            E+L M++VL +      P++ E+   +       EWQ +A+  KGMI+  PG KP ++R+
Sbjct: 650  EVLSMHQVLLYLLRCNKPLVPEEEIANMLQWEELEWQKYAEECKGMIVTNPGMKPSSVRI 709

Query: 615  DQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAED 672
            DQLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK    D
Sbjct: 710  DQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQAD 769

Query: 673  KRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHR 732
            K++L  +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+
Sbjct: 770  KQKLVQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHK 829

Query: 733  SLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHF 792
             L  L+  I Y F +R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H+
Sbjct: 830  CLMHLDKLIGYIFTDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHY 889

Query: 793  QNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEG 852
             + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEG
Sbjct: 890  MHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPLLEEG 949

Query: 853  GLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLD 912
            GLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEALMGA++L+
Sbjct: 950  GLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALMGAVYLE 1009

Query: 913  GGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYS 972
            GG++ A Q+F  +L+ + ++R   W+ YP HPLQ QE + DR  +E SP+LK+L   E +
Sbjct: 1010 GGLEEAKQLFGRLLFGNQDLR-DVWLNYPLHPLQLQESNSDRHLIETSPVLKKLTKFEEA 1068

Query: 973  SGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
             GV F H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1069 IGVEFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1118



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 60/97 (61%), Gaps = 1/97 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G+++F
Sbjct: 1095 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEF 1154

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
             +    +     +  K  +A+  E+ + AL++D  ++
Sbjct: 1155 AITNDKTKRPVVLRTK-TLADLLESFIAALYIDKDLE 1190


>gi|291395193|ref|XP_002714143.1| PREDICTED: ribonuclease III, nuclear [Oryctolagus cuniculus]
          Length = 1338

 Score =  831 bits (2147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/994 (44%), Positives = 621/994 (62%), Gaps = 72/994 (7%)

Query: 70   SFDCKTGTTQVDNLPSTNVSN-QSNP--ITPQTSTGRTNQYNRWTICP---APMCQISPT 123
            S+ C  G       P  + +  QS+P    P   TG    +      P   AP  + SP 
Sbjct: 165  SYQCPPGYAHHSFPPPPSFNGFQSSPSAFPPSAGTGGGPHFRHLPPYPLPKAPSERRSPE 224

Query: 124  QLHLKHPLAGQTNIMSRSMHRDDESNQ-RRNRSSSRSKNNGYSHRSENSKSSPTRTETNL 182
            +L  KH             HRD    +  R+RS  R +      RS + +   +R  ++ 
Sbjct: 225  RL--KH--------YDGHRHRDHSHGRGERHRSLDRRERG----RSPDRRRPDSRYRSDY 270

Query: 183  KRRRSRSKSRS---------------ESKSRSEVPRQACARRSRSRSRILS-PKRSGEAL 226
             R R+ S+ RS               +++    + R       RS SR  S  K+     
Sbjct: 271  DRGRTPSRHRSYERGRERERERHRHRDNRRSPSLERSYKKEYKRSGSRSPSREKKRARWE 330

Query: 227  SNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEE---------KKIWTRSAPADLYYT 277
               D+W  +N SS +E  + + ++   E ++ + ++         K +W R   ++ YY+
Sbjct: 331  EEKDRWN-DNQSSGKE--KNYTSIKEKEPEETLPDKNEEEEEELLKPVWIRCTHSENYYS 387

Query: 278  K----RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIK 333
                 +  D +   T + R + D FE              +      + K  R   +  K
Sbjct: 388  SDPMDQVGDSTVVGTSRLRDLYDRFEE-------------ELGSRQEKAKAARPPWEPPK 434

Query: 334  RKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEM 393
             K      + + S        + S   D+E  + + E++ K+ HPDRLH ELW+ND G+M
Sbjct: 435  TKLDEDLESSSESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQM 494

Query: 394  NDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPT 453
            NDGPLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR+TVSPPTNFL ++PT
Sbjct: 495  NDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPT 554

Query: 454  VIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFN 513
            VIE+D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE +P  F VK  ELF  
Sbjct: 555  VIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSL 614

Query: 514  YLFHEILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSF 570
            +LF +ILEL D +LK    +D    CP+FH MPRFVR L D GKE+L M+++L +     
Sbjct: 615  FLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCS 674

Query: 571  VPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YP 628
              ++ E+   +       EWQ +A+  KGMI+  PG+KP ++R+DQLDRE    D+  +P
Sbjct: 675  KALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFP 734

Query: 629  DAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRT 688
              VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK++LA +E+ LQ++R 
Sbjct: 735  IIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQ 794

Query: 689  NSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNR 748
             + M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ L  L+  I Y FQ+R
Sbjct: 795  KNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDR 854

Query: 749  YLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMS 808
             LLQLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  + RK+GINTLINIMS
Sbjct: 855  CLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMS 914

Query: 809  KLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLA 868
            +LG+   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGGLATYR AIVQNQHLA
Sbjct: 915  RLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLA 974

Query: 869  HLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 928
             LAK++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G ++ A Q+F  +L+ 
Sbjct: 975  MLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFN 1034

Query: 929  DNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFT 988
            D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT
Sbjct: 1035 DPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFT 1093

Query: 989  TRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
             R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1094 LRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1127



 Score = 63.9 bits (154), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 64/109 (58%), Gaps = 2/109 (1%)

Query: 819  NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
             + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G+++
Sbjct: 1103 TLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE 1162

Query: 879  FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            + +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1163 YAITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1209


>gi|296194850|ref|XP_002745134.1| PREDICTED: ribonuclease 3 isoform 1 [Callithrix jacchus]
          Length = 1374

 Score =  831 bits (2146), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/848 (48%), Positives = 566/848 (66%), Gaps = 57/848 (6%)

Query: 218  SPKRSGEALSNLDKWR-----MNNCSSEREMT--------------------EKFNTLAA 252
            +P+ SGE + N D W      MN+ S  RE                      + + ++  
Sbjct: 330  TPELSGEIIKNTDSWAPPLEIMNHRSPSREKKRARWEEEKDRWSDNQSSGKDKNYTSIKE 389

Query: 253  MEADQIIEEE---------KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFE 299
             E ++   ++         K +W R   ++ YY+     +  D +   T + R + D+FE
Sbjct: 390  KEPEETTPDKNEEEEEELLKPVWIRCTHSENYYSSDPMDQVGDSTVVGTSRLRDLYDKFE 449

Query: 300  SVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGE 359
                          +      + K  R   +  K K      + + S        + S  
Sbjct: 450  E-------------ELGSRQEKAKAARPPWEPPKTKLDEDLESSSESECESDEDSTCSSS 496

Query: 360  EDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGED 419
             D+E  + + E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+
Sbjct: 497  SDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEE 556

Query: 420  EQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLP 479
                C P TNNA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P
Sbjct: 557  AIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIP 616

Query: 480  TCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---C 536
             CKVIRFNI YTI +IEE +P  F VK  ELF  +LF +ILEL D +LK    +D    C
Sbjct: 617  LCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCC 676

Query: 537  PQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADG 596
            P+FH MPRFVR L D GKE+L M+++L +       ++ E+   +       EWQ +A+ 
Sbjct: 677  PRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEE 736

Query: 597  VKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKG 654
             KGMI+  PG+KP ++R+DQLDRE    D+  +P  VHFG RP QL +AG P +QKLWK 
Sbjct: 737  CKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKS 796

Query: 655  YVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDM 714
            YVKLRHL+AN PK    DK++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+
Sbjct: 797  YVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDV 856

Query: 715  VQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNS 774
             QHAM++PVL  H+R+H+ L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNS
Sbjct: 857  CQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNS 916

Query: 775  LSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVV 834
            LSNCG+RQP+YGDR++H  + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVV
Sbjct: 917  LSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVV 976

Query: 835  EFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVEL 894
            EF+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L
Sbjct: 977  EFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDL 1036

Query: 895  KHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDR 954
            +HAMANCFEAL+GA++L+G ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DR
Sbjct: 1037 RHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDR 1095

Query: 955  QWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQ 1014
            Q +E SP+L++L   E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++Q
Sbjct: 1096 QLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQ 1155

Query: 1015 LITSDYLY 1022
            L+ ++YL+
Sbjct: 1156 LVATEYLF 1163



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1140 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1199

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1200 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1245


>gi|403290285|ref|XP_003936253.1| PREDICTED: ribonuclease 3 [Saimiri boliviensis boliviensis]
          Length = 1374

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/769 (52%), Positives = 541/769 (70%), Gaps = 23/769 (2%)

Query: 263  KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYT 318
            K +W R   ++ YY+     +  D +   T + R + D+FE              +    
Sbjct: 409  KPVWIRCTHSENYYSSDPMDQVGDSTVVGTSRLRDLYDKFEE-------------ELGSR 455

Query: 319  ANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHP 378
              + K  R   +  K K      + + S        + S   D+E  + + E++ K+ HP
Sbjct: 456  QEKAKAARPPWEPPKTKLDEDLESSSESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHP 515

Query: 379  DRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYR 438
            DRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR
Sbjct: 516  DRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYR 575

Query: 439  VTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEK 498
            +TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE 
Sbjct: 576  ITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEM 635

Query: 499  VPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKE 555
            +P  F VK  ELF  +LF +ILEL D +LK    +D    CP+FH MPRFVR L D GKE
Sbjct: 636  MPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKE 695

Query: 556  LLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVD 615
            +L M+++L +       ++ E+   +       EWQ +A+  KGMI+  PG+KP ++R+D
Sbjct: 696  VLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRID 755

Query: 616  QLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDK 673
            QLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK
Sbjct: 756  QLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDK 815

Query: 674  RRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRS 733
            ++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ 
Sbjct: 816  QKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQC 875

Query: 734  LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
            L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  
Sbjct: 876  LMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHM 935

Query: 794  NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
            + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGG
Sbjct: 936  HMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGG 995

Query: 854  LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
            LATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G
Sbjct: 996  LATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEG 1055

Query: 914  GIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSS 973
             ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + 
Sbjct: 1056 SLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAI 1114

Query: 974  GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1115 GVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1163



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1140 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1199

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1200 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1245


>gi|155030236|ref|NP_001093882.1| ribonuclease 3 isoform 2 [Homo sapiens]
 gi|114600827|ref|XP_001157762.1| PREDICTED: ribonuclease 3 isoform 10 [Pan troglodytes]
 gi|426385040|ref|XP_004059046.1| PREDICTED: ribonuclease 3 isoform 1 [Gorilla gorilla gorilla]
 gi|410219536|gb|JAA06987.1| drosha, ribonuclease type III [Pan troglodytes]
 gi|410267414|gb|JAA21673.1| drosha, ribonuclease type III [Pan troglodytes]
 gi|410300308|gb|JAA28754.1| drosha, ribonuclease type III [Pan troglodytes]
 gi|410355699|gb|JAA44453.1| drosha, ribonuclease type III [Pan troglodytes]
          Length = 1337

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/856 (48%), Positives = 573/856 (66%), Gaps = 45/856 (5%)

Query: 185  RRSRSKSRSESKSRSEVPRQACARRSRSRSRILSPKRSGEALSNLDKWRMNNCSSEREMT 244
            RRS S  RS  K           +RS SRS     KR+       D+W  N  S +    
Sbjct: 298  RRSPSLERSYKKE---------YKRSGSRSPSREKKRA-RWEEEKDRWSDNQSSGK---D 344

Query: 245  EKFNTLAAMEADQIIEEE---------KKIWTRSAPADLYYTK----RTEDDSYECTQKT 291
            + + ++   E ++ + ++         K +W R   ++ YY+     +  D +   T + 
Sbjct: 345  KNYTSIKEKEPEETMPDKNEEEEEELLKPVWIRCTHSENYYSSDPMDQVGDSTVVGTSRL 404

Query: 292  RTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSES 351
            R + D+FE              +      + K  R   +  K K      + + S     
Sbjct: 405  RDLYDKFEE-------------ELGSRQEKAKAARPPWEPPKTKLDEDLESSSESECESD 451

Query: 352  SSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIR 411
               + S   D+E  + + E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIR
Sbjct: 452  EDSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIR 511

Query: 412  HNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFS 471
            H+IY GE+    C P TNNA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+
Sbjct: 512  HSIYPGEEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFA 571

Query: 472  HHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSAN 531
            H PL  +P CKVIRFNI YTI +IEE +P  F VK  ELF  +LF +ILEL D +LK   
Sbjct: 572  HAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPL 631

Query: 532  NKDG---CPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTY 588
             +D    CP+FH MPRFVR L D GKE+L M+++L +       ++ E+   +       
Sbjct: 632  FEDSPPCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEEL 691

Query: 589  EWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSP 646
            EWQ +A+  KGMI+  PG+KP ++R+DQLDRE    D+  +P  VHFG RP QL +AG P
Sbjct: 692  EWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDP 751

Query: 647  DFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFY 706
             +QKLWK YVKLRHL+AN PK    DK++LA +E+ LQ++R  + M+R VTV +SS+GF+
Sbjct: 752  QYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFW 811

Query: 707  RTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGT 766
            +TGI  D+ QHAM++PVL  H+R+H+ L  L+  I Y FQ+R LLQLA+THPS+  NFG 
Sbjct: 812  KTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGM 871

Query: 767  NPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERL 826
            NPDHARNSLSNCG+RQP+YGDR++H  + RK+GINTLINIMS+LG+   T S I HNERL
Sbjct: 872  NPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERL 931

Query: 827  EFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGS 886
            EFLGDAVVEF+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG 
Sbjct: 932  EFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGP 991

Query: 887  DLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQ 946
            DLC E +L+HAMANCFEAL+GA++L+G ++ A Q+F  +L+ D ++R + W+ YP HPLQ
Sbjct: 992  DLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQ 1050

Query: 947  EQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLE 1006
             QEP+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT R++G+ +LTLG NQR+E
Sbjct: 1051 LQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRME 1110

Query: 1007 FLGDTVLQLITSDYLY 1022
            FLGD+++QL+ ++YL+
Sbjct: 1111 FLGDSIMQLVATEYLF 1126



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1103 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1162

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1163 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1208


>gi|8886722|gb|AAF80558.1|AF189011_1 ribonuclease III [Homo sapiens]
          Length = 1374

 Score =  830 bits (2143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/811 (49%), Positives = 557/811 (68%), Gaps = 35/811 (4%)

Query: 230  DKWRMNNCSSEREMTEKFNTLAAMEADQIIEEE---------KKIWTRSAPADLYYTK-- 278
            D+W  N  S +    + + ++   E ++ + ++         K +W R   ++ YY+   
Sbjct: 370  DRWSDNQSSGK---DKNYTSIKEKEPEETMPDKNEEEEEELLKPVWIRCTHSENYYSSDP 426

Query: 279  --RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKC 336
              +  D +   T + R + D+FE              +      + K  R   +  K K 
Sbjct: 427  MDQVGDSTVVGTSRLRDLYDKFEE-------------ELGSRQEKAKAARPPWEPPKTKL 473

Query: 337  SHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDG 396
                 + + S        + S   D+E  + + E++ K+ HPDRLH ELW+ND G+MNDG
Sbjct: 474  DEDLESSSESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDG 533

Query: 397  PLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIE 456
            PLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR+TVSPPTNFL ++PTVIE
Sbjct: 534  PLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIE 593

Query: 457  HDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLF 516
            +D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE +P  F VK  ELF  +LF
Sbjct: 594  YDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLF 653

Query: 517  HEILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPV 573
             +ILEL D +LK    +D    CP+FH MPRFVR L D GKE+L M+++L +       +
Sbjct: 654  RDILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKAL 713

Query: 574  ISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDAV 631
            + E+   +       EWQ +A+  KGMI+  PG+KP ++R+DQLDRE    D+  +P  V
Sbjct: 714  VPEEEIANMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIV 773

Query: 632  HFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSK 691
            HFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK++LA +E+ LQ++R  + 
Sbjct: 774  HFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNT 833

Query: 692  MKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLL 751
            M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ L  L+  I Y FQ+R LL
Sbjct: 834  MRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLL 893

Query: 752  QLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLG 811
            QLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  + RK+GINTLINIMS+LG
Sbjct: 894  QLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLG 953

Query: 812  RKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLA 871
            +   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGGLATYR AIVQNQHLA LA
Sbjct: 954  QDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLA 1013

Query: 872  KRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
            K++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G ++ A Q+F  +L+ D +
Sbjct: 1014 KKLELDPFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPD 1073

Query: 932  VRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRS 991
            +R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT R+
Sbjct: 1074 LR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRT 1132

Query: 992  MGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            +G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1133 VGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1163



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 63/108 (58%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1140 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1199

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL+ D  ++     F +V +
Sbjct: 1200 AITNDKTKRPVALRTK-TLADLLESFIAALYTDKDLEYV-HTFMNVCF 1245


>gi|149732818|ref|XP_001500764.1| PREDICTED: ribonuclease 3 isoform 1 [Equus caballus]
          Length = 1374

 Score =  830 bits (2143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/769 (52%), Positives = 541/769 (70%), Gaps = 23/769 (2%)

Query: 263  KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYT 318
            K +W R   ++ YY+     +  D +   T + R + D+FE              +    
Sbjct: 409  KPVWIRCTHSENYYSSDPMDQVGDSTVVGTSRLRDLYDKFEE-------------ELGSR 455

Query: 319  ANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHP 378
              + K  R   +  K K      + + S        + S   D+E  + + E++ K+ HP
Sbjct: 456  QEKAKAARPPWEPPKTKLDEDLESSSESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHP 515

Query: 379  DRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYR 438
            DRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR
Sbjct: 516  DRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYR 575

Query: 439  VTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEK 498
            +TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE 
Sbjct: 576  ITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEM 635

Query: 499  VPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKE 555
            +P  F VK  ELF  +LF +ILEL D +LK    +D    CP+FH MPRFVR L D GKE
Sbjct: 636  MPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKE 695

Query: 556  LLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVD 615
            +L M+++L +       ++ E+   +       EWQ +A+  KGMI+  PG+KP ++R+D
Sbjct: 696  VLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRID 755

Query: 616  QLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDK 673
            QLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK
Sbjct: 756  QLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDK 815

Query: 674  RRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRS 733
            ++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ 
Sbjct: 816  QKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQC 875

Query: 734  LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
            L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  
Sbjct: 876  LMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHM 935

Query: 794  NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
            + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGG
Sbjct: 936  HMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGG 995

Query: 854  LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
            LATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G
Sbjct: 996  LATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEG 1055

Query: 914  GIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSS 973
             ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + 
Sbjct: 1056 SLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAI 1114

Query: 974  GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1115 GVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1163



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1140 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1199

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1200 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1245


>gi|155030234|ref|NP_037367.3| ribonuclease 3 isoform 1 [Homo sapiens]
 gi|426385042|ref|XP_004059047.1| PREDICTED: ribonuclease 3 isoform 2 [Gorilla gorilla gorilla]
 gi|20139357|sp|Q9NRR4.2|RNC_HUMAN RecName: Full=Ribonuclease 3; AltName: Full=Protein Drosha; AltName:
            Full=Ribonuclease III; Short=RNase III; AltName:
            Full=p241
          Length = 1374

 Score =  830 bits (2143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/811 (49%), Positives = 557/811 (68%), Gaps = 35/811 (4%)

Query: 230  DKWRMNNCSSEREMTEKFNTLAAMEADQIIEEE---------KKIWTRSAPADLYYTK-- 278
            D+W  N  S +    + + ++   E ++ + ++         K +W R   ++ YY+   
Sbjct: 370  DRWSDNQSSGK---DKNYTSIKEKEPEETMPDKNEEEEEELLKPVWIRCTHSENYYSSDP 426

Query: 279  --RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKC 336
              +  D +   T + R + D+FE              +      + K  R   +  K K 
Sbjct: 427  MDQVGDSTVVGTSRLRDLYDKFEE-------------ELGSRQEKAKAARPPWEPPKTKL 473

Query: 337  SHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDG 396
                 + + S        + S   D+E  + + E++ K+ HPDRLH ELW+ND G+MNDG
Sbjct: 474  DEDLESSSESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDG 533

Query: 397  PLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIE 456
            PLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR+TVSPPTNFL ++PTVIE
Sbjct: 534  PLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIE 593

Query: 457  HDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLF 516
            +D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE +P  F VK  ELF  +LF
Sbjct: 594  YDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLF 653

Query: 517  HEILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPV 573
             +ILEL D +LK    +D    CP+FH MPRFVR L D GKE+L M+++L +       +
Sbjct: 654  RDILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKAL 713

Query: 574  ISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDAV 631
            + E+   +       EWQ +A+  KGMI+  PG+KP ++R+DQLDRE    D+  +P  V
Sbjct: 714  VPEEEIANMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIV 773

Query: 632  HFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSK 691
            HFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK++LA +E+ LQ++R  + 
Sbjct: 774  HFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNT 833

Query: 692  MKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLL 751
            M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ L  L+  I Y FQ+R LL
Sbjct: 834  MRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLL 893

Query: 752  QLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLG 811
            QLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  + RK+GINTLINIMS+LG
Sbjct: 894  QLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLG 953

Query: 812  RKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLA 871
            +   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGGLATYR AIVQNQHLA LA
Sbjct: 954  QDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLA 1013

Query: 872  KRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
            K++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G ++ A Q+F  +L+ D +
Sbjct: 1014 KKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPD 1073

Query: 932  VRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRS 991
            +R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT R+
Sbjct: 1074 LR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRT 1132

Query: 992  MGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            +G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1133 VGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1163



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1140 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1199

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1200 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1245


>gi|32450506|gb|AAH54003.1| RNASEN protein [Homo sapiens]
          Length = 1192

 Score =  829 bits (2142), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/856 (48%), Positives = 573/856 (66%), Gaps = 45/856 (5%)

Query: 185  RRSRSKSRSESKSRSEVPRQACARRSRSRSRILSPKRSGEALSNLDKWRMNNCSSEREMT 244
            RRS S  RS  K           +RS SRS     KR+       D+W  N  S +    
Sbjct: 298  RRSPSLERSYKKE---------YKRSGSRSPSREKKRA-RWEEEKDRWSDNQSSGK---D 344

Query: 245  EKFNTLAAMEADQIIEEE---------KKIWTRSAPADLYYTK----RTEDDSYECTQKT 291
            + + ++   E ++ + ++         K +W R   ++ YY+     +  D +   T + 
Sbjct: 345  KNYTSIKEKEPEETMPDKNEEEEEELLKPVWIRCTHSENYYSSDPMDQVGDSTVVGTSRL 404

Query: 292  RTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSES 351
            R + D+FE              +      + K  R   +  K K      + + S     
Sbjct: 405  RDLYDKFEE-------------ELGSRQEKAKAARPPWEPPKTKLDEDLESSSESECESD 451

Query: 352  SSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIR 411
               + S   D+E  + + E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIR
Sbjct: 452  EDSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIR 511

Query: 412  HNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFS 471
            H+IY GE+    C P TNNA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+
Sbjct: 512  HSIYPGEEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFA 571

Query: 472  HHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSAN 531
            H PL  +P CKVIRFNI YTI +IEE +P  F VK  ELF  +LF +ILEL D +LK   
Sbjct: 572  HAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPL 631

Query: 532  NKDG---CPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTY 588
             +D    CP+FH MPRFVR L D GKE+L M+++L +       ++ E+   +       
Sbjct: 632  FEDSPPCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEEL 691

Query: 589  EWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSP 646
            EWQ +A+  KGMI+  PG+KP ++R+DQLDRE    D+  +P  VHFG RP QL +AG P
Sbjct: 692  EWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDP 751

Query: 647  DFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFY 706
             +QKLWK YVKLRHL+AN PK    DK++LA +E+ LQ++R  + M+R VTV +SS+GF+
Sbjct: 752  QYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFW 811

Query: 707  RTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGT 766
            +TGI  D+ QHAM++PVL  H+R+H+ L  L+  I Y FQ+R LLQLA+THPS+  NFG 
Sbjct: 812  KTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGM 871

Query: 767  NPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERL 826
            NPDHARNSLSNCG+RQP+YGDR++H  + RK+GINTLINIMS+LG+   T S I HNERL
Sbjct: 872  NPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERL 931

Query: 827  EFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGS 886
            EFLGDAVVEF+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG 
Sbjct: 932  EFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGP 991

Query: 887  DLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQ 946
            DLC E +L+HAMANCFEAL+GA++L+G ++ A Q+F  +L+ D ++R + W+ YP HPLQ
Sbjct: 992  DLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQ 1050

Query: 947  EQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLE 1006
             QEP+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT R++G+ +LTLG NQR+E
Sbjct: 1051 LQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRME 1110

Query: 1007 FLGDTVLQLITSDYLY 1022
            FLGD+++QL+ ++YL+
Sbjct: 1111 FLGDSIMQLVATEYLF 1126



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 44/63 (69%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++ +
Sbjct: 1103 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQVW 1162

Query: 880  MLY 882
             +Y
Sbjct: 1163 SIY 1165


>gi|301769069|ref|XP_002919953.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3-like [Ailuropoda
            melanoleuca]
          Length = 1369

 Score =  829 bits (2142), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/774 (52%), Positives = 544/774 (70%), Gaps = 25/774 (3%)

Query: 260  EEE--KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKP 313
            EEE  K +W R   ++ YY+     +  D +   T + R + D+FE              
Sbjct: 399  EEELLKPVWIRCTHSENYYSSDPMDQVGDSTVVGTSRLRDLYDKFEE------------- 445

Query: 314  QFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQL 373
            +      + K  R   +  K K      + + S        + S   D+E  + + E++ 
Sbjct: 446  ELGSRQEKAKAARPPWEPPKTKLDEDLESSSESECESDEDSTCSSSSDSEVFDVIAEIKR 505

Query: 374  KQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADK 433
            K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P TNNA +
Sbjct: 506  KKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGR 565

Query: 434  LYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIV 493
            L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI 
Sbjct: 566  LFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIH 625

Query: 494  YIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPRFVRELK 550
            +IEE +P  F VK  ELF  +LF +ILEL D +LK    +D    CP+FH MPRFVR L 
Sbjct: 626  FIEEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLP 685

Query: 551  DNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPC 610
            D GKE+L M+++L +       ++ E+   +       EWQ +A+  KGMI+  PG+KP 
Sbjct: 686  DGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPGTKPS 745

Query: 611  AMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKR 668
            ++R+DQLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK 
Sbjct: 746  SVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKV 805

Query: 669  TAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHL 728
               DK++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+
Sbjct: 806  KQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHI 865

Query: 729  RFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDR 788
            R+H+ L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR
Sbjct: 866  RYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDR 925

Query: 789  RIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPD 848
            ++H  + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL+++FP 
Sbjct: 926  KVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPS 985

Query: 849  IEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGA 908
            +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA
Sbjct: 986  LEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGA 1045

Query: 909  LFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQY 968
            ++L+G ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L++L  
Sbjct: 1046 VYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTE 1104

Query: 969  LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
             E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1105 FEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1158



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1135 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1194

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1195 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1240


>gi|386781115|ref|NP_001248086.1| ribonuclease 3 [Macaca mulatta]
 gi|380783731|gb|AFE63741.1| ribonuclease 3 isoform 2 [Macaca mulatta]
 gi|380783733|gb|AFE63742.1| ribonuclease 3 isoform 2 [Macaca mulatta]
 gi|383412671|gb|AFH29549.1| ribonuclease 3 isoform 2 [Macaca mulatta]
 gi|384943204|gb|AFI35207.1| ribonuclease 3 isoform 2 [Macaca mulatta]
          Length = 1337

 Score =  829 bits (2142), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/856 (48%), Positives = 572/856 (66%), Gaps = 45/856 (5%)

Query: 185  RRSRSKSRSESKSRSEVPRQACARRSRSRSRILSPKRSGEALSNLDKWRMNNCSSEREMT 244
            RRS S  RS  K           +RS SRS     KR+       D+W  N  S +    
Sbjct: 298  RRSPSLERSYKKE---------YKRSGSRSPSREKKRA-RWEEEKDRWSDNQSSGK---D 344

Query: 245  EKFNTLAAMEADQIIEEE---------KKIWTRSAPADLYYTK----RTEDDSYECTQKT 291
            + + ++   E ++   ++         K +W R   ++ YY+     +  D +   T + 
Sbjct: 345  KNYTSIKEKEPEETTPDKNEEEEEELLKPVWIRCTHSENYYSSDPMDQVGDSTVVGTSRL 404

Query: 292  RTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSES 351
            R + D+FE              +      + K  R   +  K K      + + S     
Sbjct: 405  RDLYDKFEE-------------ELGSRQEKAKAARPPWEPPKTKLDEDLESSSESECESD 451

Query: 352  SSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIR 411
               + S   D+E  + + E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIR
Sbjct: 452  EDSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIR 511

Query: 412  HNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFS 471
            H+IY GE+    C P TNNA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+
Sbjct: 512  HSIYPGEEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFA 571

Query: 472  HHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSAN 531
            H PL  +P CKVIRFNI YTI +IEE +P  F VK  ELF  +LF +ILEL D +LK   
Sbjct: 572  HAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPL 631

Query: 532  NKDG---CPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTY 588
             +D    CP+FH MPRFVR L D GKE+L M+++L +       ++ E+   +       
Sbjct: 632  FEDSPPCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEEL 691

Query: 589  EWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSP 646
            EWQ +A+  KGMI+  PG+KP ++R+DQLDRE    D+  +P  VHFG RP QL +AG P
Sbjct: 692  EWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDP 751

Query: 647  DFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFY 706
             +QKLWK YVKLRHL+AN PK    DK++LA +E+ LQ++R  + M+R VTV +SS+GF+
Sbjct: 752  QYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFW 811

Query: 707  RTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGT 766
            +TGI  D+ QHAM++PVL  H+R+H+ L  L+  I Y FQ+R LLQLA+THPS+  NFG 
Sbjct: 812  KTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGM 871

Query: 767  NPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERL 826
            NPDHARNSLSNCG+RQP+YGDR++H  + RK+GINTLINIMS+LG+   T S I HNERL
Sbjct: 872  NPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERL 931

Query: 827  EFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGS 886
            EFLGDAVVEF+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG 
Sbjct: 932  EFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGP 991

Query: 887  DLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQ 946
            DLC E +L+HAMANCFEAL+GA++L+G ++ A Q+F  +L+ D ++R + W+ YP HPLQ
Sbjct: 992  DLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQ 1050

Query: 947  EQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLE 1006
             QEP+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT R++G+ +LTLG NQR+E
Sbjct: 1051 LQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRME 1110

Query: 1007 FLGDTVLQLITSDYLY 1022
            FLGD+++QL+ ++YL+
Sbjct: 1111 FLGDSIMQLVATEYLF 1126



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1103 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1162

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1163 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1208


>gi|338718922|ref|XP_003363908.1| PREDICTED: ribonuclease 3 [Equus caballus]
          Length = 1337

 Score =  829 bits (2142), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/769 (52%), Positives = 541/769 (70%), Gaps = 23/769 (2%)

Query: 263  KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYT 318
            K +W R   ++ YY+     +  D +   T + R + D+FE              +    
Sbjct: 372  KPVWIRCTHSENYYSSDPMDQVGDSTVVGTSRLRDLYDKFEE-------------ELGSR 418

Query: 319  ANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHP 378
              + K  R   +  K K      + + S        + S   D+E  + + E++ K+ HP
Sbjct: 419  QEKAKAARPPWEPPKTKLDEDLESSSESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHP 478

Query: 379  DRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYR 438
            DRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR
Sbjct: 479  DRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYR 538

Query: 439  VTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEK 498
            +TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE 
Sbjct: 539  ITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEM 598

Query: 499  VPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKE 555
            +P  F VK  ELF  +LF +ILEL D +LK    +D    CP+FH MPRFVR L D GKE
Sbjct: 599  MPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKE 658

Query: 556  LLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVD 615
            +L M+++L +       ++ E+   +       EWQ +A+  KGMI+  PG+KP ++R+D
Sbjct: 659  VLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRID 718

Query: 616  QLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDK 673
            QLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK
Sbjct: 719  QLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDK 778

Query: 674  RRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRS 733
            ++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ 
Sbjct: 779  QKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQC 838

Query: 734  LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
            L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  
Sbjct: 839  LMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHM 898

Query: 794  NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
            + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGG
Sbjct: 899  HMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGG 958

Query: 854  LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
            LATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G
Sbjct: 959  LATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEG 1018

Query: 914  GIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSS 973
             ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + 
Sbjct: 1019 SLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAI 1077

Query: 974  GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1078 GVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1126



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1103 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1162

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1163 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1208


>gi|296194852|ref|XP_002745135.1| PREDICTED: ribonuclease 3 isoform 2 [Callithrix jacchus]
          Length = 1337

 Score =  829 bits (2142), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/856 (48%), Positives = 572/856 (66%), Gaps = 45/856 (5%)

Query: 185  RRSRSKSRSESKSRSEVPRQACARRSRSRSRILSPKRSGEALSNLDKWRMNNCSSEREMT 244
            RRS S  RS  K           +RS SRS     KR+       D+W  N  S +    
Sbjct: 298  RRSPSLERSYKKE---------YKRSGSRSPSREKKRA-RWEEEKDRWSDNQSSGK---D 344

Query: 245  EKFNTLAAMEADQIIEEE---------KKIWTRSAPADLYYTK----RTEDDSYECTQKT 291
            + + ++   E ++   ++         K +W R   ++ YY+     +  D +   T + 
Sbjct: 345  KNYTSIKEKEPEETTPDKNEEEEEELLKPVWIRCTHSENYYSSDPMDQVGDSTVVGTSRL 404

Query: 292  RTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSES 351
            R + D+FE              +      + K  R   +  K K      + + S     
Sbjct: 405  RDLYDKFEE-------------ELGSRQEKAKAARPPWEPPKTKLDEDLESSSESECESD 451

Query: 352  SSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIR 411
               + S   D+E  + + E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIR
Sbjct: 452  EDSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIR 511

Query: 412  HNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFS 471
            H+IY GE+    C P TNNA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+
Sbjct: 512  HSIYPGEEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFA 571

Query: 472  HHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSAN 531
            H PL  +P CKVIRFNI YTI +IEE +P  F VK  ELF  +LF +ILEL D +LK   
Sbjct: 572  HAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPL 631

Query: 532  NKDG---CPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTY 588
             +D    CP+FH MPRFVR L D GKE+L M+++L +       ++ E+   +       
Sbjct: 632  FEDSPPCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEEL 691

Query: 589  EWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSP 646
            EWQ +A+  KGMI+  PG+KP ++R+DQLDRE    D+  +P  VHFG RP QL +AG P
Sbjct: 692  EWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDP 751

Query: 647  DFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFY 706
             +QKLWK YVKLRHL+AN PK    DK++LA +E+ LQ++R  + M+R VTV +SS+GF+
Sbjct: 752  QYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFW 811

Query: 707  RTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGT 766
            +TGI  D+ QHAM++PVL  H+R+H+ L  L+  I Y FQ+R LLQLA+THPS+  NFG 
Sbjct: 812  KTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGM 871

Query: 767  NPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERL 826
            NPDHARNSLSNCG+RQP+YGDR++H  + RK+GINTLINIMS+LG+   T S I HNERL
Sbjct: 872  NPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERL 931

Query: 827  EFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGS 886
            EFLGDAVVEF+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG 
Sbjct: 932  EFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGP 991

Query: 887  DLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQ 946
            DLC E +L+HAMANCFEAL+GA++L+G ++ A Q+F  +L+ D ++R + W+ YP HPLQ
Sbjct: 992  DLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQ 1050

Query: 947  EQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLE 1006
             QEP+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT R++G+ +LTLG NQR+E
Sbjct: 1051 LQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRME 1110

Query: 1007 FLGDTVLQLITSDYLY 1022
            FLGD+++QL+ ++YL+
Sbjct: 1111 FLGDSIMQLVATEYLF 1126



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1103 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1162

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1163 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1208


>gi|332821657|ref|XP_001157472.2| PREDICTED: ribonuclease 3 isoform 5 [Pan troglodytes]
 gi|410219538|gb|JAA06988.1| drosha, ribonuclease type III [Pan troglodytes]
 gi|410267416|gb|JAA21674.1| drosha, ribonuclease type III [Pan troglodytes]
 gi|410300306|gb|JAA28753.1| drosha, ribonuclease type III [Pan troglodytes]
 gi|410300310|gb|JAA28755.1| drosha, ribonuclease type III [Pan troglodytes]
 gi|410355701|gb|JAA44454.1| drosha, ribonuclease type III [Pan troglodytes]
          Length = 1374

 Score =  829 bits (2142), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/811 (49%), Positives = 557/811 (68%), Gaps = 35/811 (4%)

Query: 230  DKWRMNNCSSEREMTEKFNTLAAMEADQIIEEE---------KKIWTRSAPADLYYTK-- 278
            D+W  N  S +    + + ++   E ++ + ++         K +W R   ++ YY+   
Sbjct: 370  DRWSDNQSSGK---DKNYTSIKEKEPEETMPDKNEEEEEELLKPVWIRCTHSENYYSSDP 426

Query: 279  --RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKC 336
              +  D +   T + R + D+FE              +      + K  R   +  K K 
Sbjct: 427  MDQVGDSTVVGTSRLRDLYDKFEE-------------ELGSRQEKAKAARPPWEPPKTKL 473

Query: 337  SHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDG 396
                 + + S        + S   D+E  + + E++ K+ HPDRLH ELW+ND G+MNDG
Sbjct: 474  DEDLESSSESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDG 533

Query: 397  PLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIE 456
            PLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR+TVSPPTNFL ++PTVIE
Sbjct: 534  PLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIE 593

Query: 457  HDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLF 516
            +D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE +P  F VK  ELF  +LF
Sbjct: 594  YDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLF 653

Query: 517  HEILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPV 573
             +ILEL D +LK    +D    CP+FH MPRFVR L D GKE+L M+++L +       +
Sbjct: 654  RDILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKAL 713

Query: 574  ISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDAV 631
            + E+   +       EWQ +A+  KGMI+  PG+KP ++R+DQLDRE    D+  +P  V
Sbjct: 714  VPEEEIANMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIV 773

Query: 632  HFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSK 691
            HFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK++LA +E+ LQ++R  + 
Sbjct: 774  HFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNT 833

Query: 692  MKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLL 751
            M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ L  L+  I Y FQ+R LL
Sbjct: 834  MRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLL 893

Query: 752  QLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLG 811
            QLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  + RK+GINTLINIMS+LG
Sbjct: 894  QLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLG 953

Query: 812  RKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLA 871
            +   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGGLATYR AIVQNQHLA LA
Sbjct: 954  QDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLA 1013

Query: 872  KRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
            K++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G ++ A Q+F  +L+ D +
Sbjct: 1014 KKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPD 1073

Query: 932  VRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRS 991
            +R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT R+
Sbjct: 1074 LR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRT 1132

Query: 992  MGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            +G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1133 VGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1163



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1140 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1199

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1200 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1245


>gi|355691240|gb|EHH26425.1| Ribonuclease 3 [Macaca mulatta]
 gi|355749843|gb|EHH54181.1| Ribonuclease 3 [Macaca fascicularis]
 gi|387541650|gb|AFJ71452.1| ribonuclease 3 isoform 1 [Macaca mulatta]
          Length = 1374

 Score =  829 bits (2141), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/769 (52%), Positives = 541/769 (70%), Gaps = 23/769 (2%)

Query: 263  KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYT 318
            K +W R   ++ YY+     +  D +   T + R + D+FE              +    
Sbjct: 409  KPVWIRCTHSENYYSSDPMDQVGDSTVVGTSRLRDLYDKFEE-------------ELGSR 455

Query: 319  ANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHP 378
              + K  R   +  K K      + + S        + S   D+E  + + E++ K+ HP
Sbjct: 456  QEKAKAARPPWEPPKTKLDEDLESSSESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHP 515

Query: 379  DRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYR 438
            DRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR
Sbjct: 516  DRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYR 575

Query: 439  VTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEK 498
            +TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE 
Sbjct: 576  ITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEM 635

Query: 499  VPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKE 555
            +P  F VK  ELF  +LF +ILEL D +LK    +D    CP+FH MPRFVR L D GKE
Sbjct: 636  MPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKE 695

Query: 556  LLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVD 615
            +L M+++L +       ++ E+   +       EWQ +A+  KGMI+  PG+KP ++R+D
Sbjct: 696  VLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRID 755

Query: 616  QLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDK 673
            QLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK
Sbjct: 756  QLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDK 815

Query: 674  RRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRS 733
            ++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ 
Sbjct: 816  QKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQC 875

Query: 734  LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
            L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  
Sbjct: 876  LMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHM 935

Query: 794  NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
            + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGG
Sbjct: 936  HMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGG 995

Query: 854  LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
            LATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G
Sbjct: 996  LATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEG 1055

Query: 914  GIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSS 973
             ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + 
Sbjct: 1056 SLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAI 1114

Query: 974  GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1115 GVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1163



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1140 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1199

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1200 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1245


>gi|402871240|ref|XP_003899581.1| PREDICTED: ribonuclease 3 [Papio anubis]
          Length = 1374

 Score =  828 bits (2140), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/769 (52%), Positives = 541/769 (70%), Gaps = 23/769 (2%)

Query: 263  KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYT 318
            K +W R   ++ YY+     +  D +   T + R + D+FE              +    
Sbjct: 409  KPVWIRCTHSENYYSSDPMDQVGDSTVVGTSRLRDLYDKFEE-------------ELGSR 455

Query: 319  ANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHP 378
              + K  R   +  K K      + + S        + S   D+E  + + E++ K+ HP
Sbjct: 456  QEKAKAARPPWEPPKTKLDEDLESSSESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHP 515

Query: 379  DRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYR 438
            DRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR
Sbjct: 516  DRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYR 575

Query: 439  VTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEK 498
            +TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE 
Sbjct: 576  ITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEM 635

Query: 499  VPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKE 555
            +P  F VK  ELF  +LF +ILEL D +LK    +D    CP+FH MPRFVR L D GKE
Sbjct: 636  MPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKE 695

Query: 556  LLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVD 615
            +L M+++L +       ++ E+   +       EWQ +A+  KGMI+  PG+KP ++R+D
Sbjct: 696  VLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRID 755

Query: 616  QLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDK 673
            QLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK
Sbjct: 756  QLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDK 815

Query: 674  RRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRS 733
            ++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ 
Sbjct: 816  QKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQC 875

Query: 734  LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
            L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  
Sbjct: 876  LMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHM 935

Query: 794  NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
            + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGG
Sbjct: 936  HMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGG 995

Query: 854  LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
            LATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G
Sbjct: 996  LATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEG 1055

Query: 914  GIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSS 973
             ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + 
Sbjct: 1056 SLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAI 1114

Query: 974  GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1115 GVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1163



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1140 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1199

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1200 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1245


>gi|165973380|ref|NP_001107152.1| drosha, ribonuclease type III [Xenopus (Silurana) tropicalis]
 gi|163916533|gb|AAI57521.1| rnasen protein [Xenopus (Silurana) tropicalis]
          Length = 1325

 Score =  828 bits (2140), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/770 (52%), Positives = 536/770 (69%), Gaps = 27/770 (3%)

Query: 263  KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYT 318
            K +W R   ++ YYT     +  D +   T + R + D+FE  +                
Sbjct: 366  KPVWVRCTHSESYYTSDPMDQVGDSTVVGTSRLRDLYDKFEEEL---------------- 409

Query: 319  ANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEED-NWMMELQLKQNH 377
              R+   R  R   +   +    +   SS SE  +D S       E  + + E++ K+ H
Sbjct: 410  GKRQATARAARPAWEPPKTKLDEDLESSSDSECETDDSCSSSSDSEVFDVIAEIKRKKAH 469

Query: 378  PDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHY 437
            PDRLH ELW+ND G+MNDGPLC+CS K+RR+GIRH+IY GE+    C P TNNA +L+HY
Sbjct: 470  PDRLHEELWYNDPGQMNDGPLCKCSLKARRTGIRHSIYPGEEPIKACRPMTNNAGRLFHY 529

Query: 438  RVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEE 497
            R+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+FSH PL   P CKVIRFNI YTI +IEE
Sbjct: 530  RITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFSHSPLTNFPLCKVIRFNIDYTIHFIEE 589

Query: 498  KVPNGFTVKDTELFFNYLFHEILELVD---LDLKSANNKDGCPQFHIMPRFVRELKDNGK 554
             +P  F VK  ELF ++L+ +ILEL D   +D    NN   CPQFH MPRFVR L D GK
Sbjct: 590  MMPEHFCVKGLELFSSHLYKDILELHDWNLMDPSVENNDANCPQFHFMPRFVRFLPDGGK 649

Query: 555  ELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRV 614
            E+L M++VL +       ++ E+   +       EWQ +A+  KGMI+  PG KP ++R+
Sbjct: 650  EVLSMHQVLLYLLRCNKSLVPEEEIANMLQWEELEWQKYAEECKGMIVTNPGMKPSSVRI 709

Query: 615  DQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAED 672
            DQLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK    D
Sbjct: 710  DQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQAD 769

Query: 673  KRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHR 732
            K++L  +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+
Sbjct: 770  KQKLVQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHK 829

Query: 733  SLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHF 792
             L  L+  I Y F +R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H+
Sbjct: 830  CLMHLDKLIGYIFTDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHY 889

Query: 793  QNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEG 852
             + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEG
Sbjct: 890  MHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPLLEEG 949

Query: 853  GLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLD 912
            GLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEALMGA++L+
Sbjct: 950  GLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALMGAVYLE 1009

Query: 913  GGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYS 972
            GG++ A Q+F  +L+ + ++R   W+ YP HPLQ QE + DR  +E SP+LK+L   E +
Sbjct: 1010 GGLEEAKQLFGRLLFGNQDLR-DVWLNYPLHPLQLQESNSDRHLIETSPVLKKLTKFEEA 1068

Query: 973  SGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
             GV F H+RLLARVFT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1069 IGVEFTHVRLLARVFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1118



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 60/97 (61%), Gaps = 1/97 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G+++F
Sbjct: 1095 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEF 1154

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
             +    +     +  K  +A+  E+ + AL++D  ++
Sbjct: 1155 AITNDKTKRPVVLRTK-TLADLLESFIAALYIDKDLE 1190


>gi|440912593|gb|ELR62150.1| Ribonuclease 3, partial [Bos grunniens mutus]
          Length = 1368

 Score =  828 bits (2139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/769 (52%), Positives = 541/769 (70%), Gaps = 23/769 (2%)

Query: 263  KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYT 318
            K +W R   ++ YY+     +  D +   T + R + D+FE              +    
Sbjct: 403  KPVWIRCTHSENYYSSDPMDQVGDSTVVGTSRLRDLYDKFEE-------------ELGSR 449

Query: 319  ANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHP 378
              + K  R   +  K K      + + S        + S   D+E  + + E++ K+ HP
Sbjct: 450  QEKAKAARPPWEPPKTKLDEDLESSSESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHP 509

Query: 379  DRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYR 438
            DRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR
Sbjct: 510  DRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYR 569

Query: 439  VTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEK 498
            +TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE 
Sbjct: 570  ITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEM 629

Query: 499  VPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKE 555
            +P  F VK  ELF  +LF +ILEL D +LK    +D    CP+FH MPRFVR L D GKE
Sbjct: 630  MPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKE 689

Query: 556  LLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVD 615
            +L M+++L +       ++ E+   +       EWQ +A+  KGMI+  PG+KP ++R+D
Sbjct: 690  VLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPGAKPSSVRID 749

Query: 616  QLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDK 673
            QLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK
Sbjct: 750  QLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDK 809

Query: 674  RRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRS 733
            ++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ 
Sbjct: 810  QKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQC 869

Query: 734  LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
            L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  
Sbjct: 870  LMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHM 929

Query: 794  NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
            + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGG
Sbjct: 930  HMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGG 989

Query: 854  LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
            LATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G
Sbjct: 990  LATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEG 1049

Query: 914  GIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSS 973
             ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + 
Sbjct: 1050 SLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEDAI 1108

Query: 974  GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1109 GVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1157



 Score = 63.5 bits (153), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1134 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1193

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1194 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1239


>gi|431917274|gb|ELK16810.1| Ribonuclease 3 [Pteropus alecto]
          Length = 1278

 Score =  828 bits (2139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/853 (49%), Positives = 572/853 (67%), Gaps = 39/853 (4%)

Query: 179  ETNLKRRRSRSKSRSESKSRSEVPRQACARRSRSRSRILSPKRSGEALSNLDKWRMNNCS 238
            E + K+   RS SRS S+ +        AR    + R    + +G       K +     
Sbjct: 220  ERSYKKEYKRSGSRSPSREKKR------ARWEEEKDRWSDSQSTG-------KEKNYTSI 266

Query: 239  SEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTK----RTEDDSYECTQKTRTI 294
             E+E+ E   TL     ++  E  K +W R   ++ YY+     +  D +   T + R +
Sbjct: 267  KEKELEE---TLPDKNEEEEEELLKPVWIRCTHSENYYSSDPMDQVGDSTVVGTSRLRDL 323

Query: 295  CDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSD 354
             D+FE              +      + K  R   +  K K      + + S        
Sbjct: 324  YDKFEE-------------ELGSRQEKAKAARPPWEPPKTKLDEDLESSSESECESDEDS 370

Query: 355  SSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNI 414
            + S   D+E  + + E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+I
Sbjct: 371  TCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSI 430

Query: 415  YAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHP 474
            Y GE+    C P TNNA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H P
Sbjct: 431  YPGEEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAP 490

Query: 475  LEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKD 534
            L  +P CKVIRFNI YTI +IEE +P  F VK  ELF  +LF +ILEL D +LK    +D
Sbjct: 491  LTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPLFED 550

Query: 535  G---CPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQ 591
                CP+FH MPRFVR L D GKE+L M+++L +       ++ E+   +       EWQ
Sbjct: 551  SPPCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQ 610

Query: 592  DFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQ 649
             +A+  KGMI+  PG+KP ++R+DQLDRE    D+  +P  VHFG RP QL +AG P +Q
Sbjct: 611  KYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQ 670

Query: 650  KLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTG 709
            KLWK YVKLRHL+AN PK    DK++LA +E+ LQ++R  + M+R VTV +SS+GF++TG
Sbjct: 671  KLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTG 730

Query: 710  IMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPD 769
            I  D+ QHAM++PVL  H+R+H+ L  L+  I Y FQ+R LLQLA+THPS+  NFG NPD
Sbjct: 731  IRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPD 790

Query: 770  HARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFL 829
            HARNSLSNCG+RQP+YGDR++H  + RK+GINTLINIMS+LG+   T S I HNERLEFL
Sbjct: 791  HARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFL 850

Query: 830  GDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 889
            GDAVVEF+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 851  GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 910

Query: 890  HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 949
             E +L+HAMANCFEAL+GA++L+G ++ A Q+F  +L+ D ++R + W+ YP HPLQ QE
Sbjct: 911  RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 969

Query: 950  PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 1009
            P+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 970  PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1029

Query: 1010 DTVLQLITSDYLY 1022
            D+++QL+ ++YL+
Sbjct: 1030 DSIMQLVATEYLF 1042



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 66/133 (49%), Gaps = 27/133 (20%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEG----------------------GLAT- 856
            + HN+R+EFLGD++++ + + +LF  FPD  EG                      GL T 
Sbjct: 1019 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTAALLYNTEWRTLTLKGGTWGLVTS 1078

Query: 857  --YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGG 914
               R+++V N+  A +A+ +G++++ +    +     +  K  +A+  E+ + AL++D  
Sbjct: 1079 DLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRTK-TLADLLESFIAALYIDKD 1137

Query: 915  IDVADQVFSSVLY 927
            ++     F +V +
Sbjct: 1138 LEYV-HTFMNVCF 1149


>gi|410949736|ref|XP_003981574.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3 [Felis catus]
          Length = 1374

 Score =  828 bits (2139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/769 (52%), Positives = 540/769 (70%), Gaps = 23/769 (2%)

Query: 263  KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYT 318
            K +W R   ++ YY+     +  D +   T + R + D+FE              +    
Sbjct: 409  KPVWIRCTHSENYYSSDPMDQVGDSTVVGTSRLRDLYDKFEE-------------ELGSR 455

Query: 319  ANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHP 378
              + K  R   +  K K      + + S        + S   D+E  + + E + K+ HP
Sbjct: 456  QEKAKAARPPWEPPKTKLDEDLESSSESECESDEDSTCSSSSDSEVFDVIAEXKRKKAHP 515

Query: 379  DRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYR 438
            DRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR
Sbjct: 516  DRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYR 575

Query: 439  VTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEK 498
            +TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE 
Sbjct: 576  ITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEM 635

Query: 499  VPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKE 555
            +P  F VK  ELF  +LF +ILEL D +LK    +D    CP+FH MPRFVR L D GKE
Sbjct: 636  MPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKE 695

Query: 556  LLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVD 615
            +L M+++L +       ++ E+   +       EWQ +A+  KGMI+  PG+KP ++R+D
Sbjct: 696  VLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRID 755

Query: 616  QLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDK 673
            QLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK
Sbjct: 756  QLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDK 815

Query: 674  RRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRS 733
            ++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ 
Sbjct: 816  QKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQC 875

Query: 734  LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
            L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  
Sbjct: 876  LMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHM 935

Query: 794  NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
            + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGG
Sbjct: 936  HMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGG 995

Query: 854  LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
            LATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G
Sbjct: 996  LATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEG 1055

Query: 914  GIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSS 973
             ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + 
Sbjct: 1056 SLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAI 1114

Query: 974  GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1115 GVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1163



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1140 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1199

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1200 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1245


>gi|426246680|ref|XP_004017120.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3 [Ovis aries]
          Length = 1339

 Score =  828 bits (2138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/769 (52%), Positives = 541/769 (70%), Gaps = 23/769 (2%)

Query: 263  KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYT 318
            K +W R   ++ YY+     +  D +   T + R + D+FE              +    
Sbjct: 374  KPVWIRCTHSENYYSSDPMDQVGDSTVVGTSRLRDLYDKFEE-------------ELGSR 420

Query: 319  ANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHP 378
              + K  R   +  K K      + + S        + S   D+E  + + E++ K+ HP
Sbjct: 421  QEKAKAARPPWEPPKTKLDEDLESSSESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHP 480

Query: 379  DRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYR 438
            DRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR
Sbjct: 481  DRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYR 540

Query: 439  VTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEK 498
            +TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE 
Sbjct: 541  ITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEM 600

Query: 499  VPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKE 555
            +P  F VK  ELF  +LF +ILEL D +LK    +D    CP+FH MPRFVR L D GKE
Sbjct: 601  MPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKE 660

Query: 556  LLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVD 615
            +L M+++L +       ++ E+   +       EWQ +A+  KGMI+  PG+KP ++R+D
Sbjct: 661  VLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPGAKPSSVRID 720

Query: 616  QLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDK 673
            QLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK
Sbjct: 721  QLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDK 780

Query: 674  RRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRS 733
            ++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ 
Sbjct: 781  QKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQC 840

Query: 734  LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
            L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  
Sbjct: 841  LMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHM 900

Query: 794  NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
            + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGG
Sbjct: 901  HMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGG 960

Query: 854  LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
            LATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G
Sbjct: 961  LATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEG 1020

Query: 914  GIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSS 973
             ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + 
Sbjct: 1021 SLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEDAI 1079

Query: 974  GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1080 GVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1128



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1105 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1164

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1165 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1210


>gi|443689602|gb|ELT91975.1| hypothetical protein CAPTEDRAFT_165112 [Capitella teleta]
          Length = 1087

 Score =  828 bits (2138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/789 (52%), Positives = 549/789 (69%), Gaps = 23/789 (2%)

Query: 240  EREMTEKFNTLAAMEADQIIEEEKKI--WTRSAPADLYYTKRTEDDSYECTQKTRTICDE 297
            E ++T++ +       D  + +E  I  WTRS+ AD+Y+ + TE+     TQ+ + + ++
Sbjct: 19   EIDLTQRLHHSGIPYLDDDLRDESAIPAWTRSSTADIYF-EMTENKERVTTQRMQNLQNK 77

Query: 298  FESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSS 357
            FE  +                A R      + KK K + + C      SS S+S  +   
Sbjct: 78   FEHDLYR-------------RAARVVAGLPSPKKTKAEPAGCQRGKEESSSSDSEDEEDE 124

Query: 358  GEEDAE-EDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYA 416
             E + + + +W    + + + P RLH +LWFN+  EMNDGP+CRCS K+R++GIRHN Y 
Sbjct: 125  EELNEKLQSSWEDARRKRFSDPRRLHEKLWFNEPEEMNDGPICRCSLKNRQTGIRHNQYP 184

Query: 417  GEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLE 476
            G      CN ++NN  +L+HY++T+SP TNFL   PT IE+D+ E+IFEG+SL SH+ ++
Sbjct: 185  GYKAPNKCNMESNNKQQLFHYQLTISPATNFLTKAPTTIEYDDHEYIFEGYSLLSHYKIQ 244

Query: 477  KLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG- 535
             +P CKVIRFNI+YTI +IE ++P+  +++  +LF +YL+ E+LELVDLD   A   DG 
Sbjct: 245  NVPVCKVIRFNIEYTIHWIESELPDNLSIRSVDLFSDYLYRELLELVDLDWLDA--PDGH 302

Query: 536  CPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFAD 595
            CP +HIMPRFVR L DNGKE+L M  VL +      P+++EK         T +WQ F D
Sbjct: 303  CPAYHIMPRFVRSLPDNGKEILSMNEVLLYLLRWNKPLVAEKDLSLLLKYDTNQWQKFVD 362

Query: 596  GVKGMIIVKPGSKPCAMRVDQLDRE--SETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWK 653
             V+G I+  PG +P ++R+DQLDR   S  +  YP  VHFG RP+QL +AG P +QKLWK
Sbjct: 363  DVRGTIVTYPGKRPSSLRIDQLDRSKISRGSTDYPLIVHFGIRPVQLSYAGDPKYQKLWK 422

Query: 654  GYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCD 713
             Y+K +HL++NK K +  DK+RL A E  LQE+R    MKR VTV +SS GFYRTG+  D
Sbjct: 423  QYMKFKHLLSNKQKVSDADKQRLKALEDLLQELRLADSMKREVTVELSSEGFYRTGLHAD 482

Query: 714  MVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARN 773
            + QHA+L+PVL+ HLRFH+ L+VLE+RIQYKF NR LLQLALTHPS+R  FGTNPDHARN
Sbjct: 483  VTQHALLVPVLVSHLRFHQCLDVLEERIQYKFNNRILLQLALTHPSFRIKFGTNPDHARN 542

Query: 774  SLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAV 833
            SL+NCG+RQ +YGDR+IH+Q+ RKRGINTL +IMSK+G+K   +S I H ERLEFLGDA+
Sbjct: 543  SLTNCGMRQLDYGDRKIHYQH-RKRGINTLFHIMSKMGQKEEVQSEIFHYERLEFLGDAI 601

Query: 834  VEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVE 893
            VEFITSIHLF +FP +EEGGL  YR AIVQN HL  LA ++ L+DFMLYAHG DLC + +
Sbjct: 602  VEFITSIHLFFMFPGVEEGGLTMYRIAIVQNPHLTKLAGKLNLQDFMLYAHGPDLCRDKD 661

Query: 894  LKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGD 953
            L+HAMANCFEALMGALF+DGGIDVAD+VF+  L+ ++   F+ W   PQHPLQE EPDGD
Sbjct: 662  LRHAMANCFEALMGALFIDGGIDVADRVFADALFGEDNALFQAWTNLPQHPLQEDEPDGD 721

Query: 954  RQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVL 1013
            R W+  S  L+++   E + GV FNHIRLLA+ F+ RS+GY NLT+G NQRLEFLGDT++
Sbjct: 722  RHWLTHSLHLQKVAKFEDAIGVQFNHIRLLAKAFSLRSVGYNNLTMGHNQRLEFLGDTII 781

Query: 1014 QLITSDYLY 1022
            QLITS+YL+
Sbjct: 782  QLITSEYLF 790



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 16/155 (10%)

Query: 786 GDRR-----IHFQNTRK--RGINTLINIMSKLGRKVATES----NIT--HNERLEFLGDA 832
           GDR      +H Q   K    I    N +  L +  +  S    N+T  HN+RLEFLGD 
Sbjct: 720 GDRHWLTHSLHLQKVAKFEDAIGVQFNHIRLLAKAFSLRSVGYNNLTMGHNQRLEFLGDT 779

Query: 833 VVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEV 892
           +++ ITS +LF  FPD  EG L+  R+++V N   + + + +G+ DF++         + 
Sbjct: 780 IIQLITSEYLFKYFPDHHEGHLSLLRSSLVNNFTQSVVCEDLGMMDFVINYERK--VSQP 837

Query: 893 ELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +     A+  EA +GAL++D G+    ++F  V +
Sbjct: 838 KRAKDRADLVEAFLGALYVDKGLAFC-KIFCQVCF 871


>gi|194306545|ref|NP_081075.3| ribonuclease 3 [Mus musculus]
 gi|194328670|ref|NP_001123621.1| ribonuclease 3 [Mus musculus]
 gi|81882947|sp|Q5HZJ0.1|RNC_MOUSE RecName: Full=Ribonuclease 3; AltName: Full=Protein Drosha; AltName:
            Full=Ribonuclease III; Short=RNase III
 gi|57242920|gb|AAH88999.1| Rnasen protein [Mus musculus]
 gi|74184402|dbj|BAE25729.1| unnamed protein product [Mus musculus]
 gi|74215950|dbj|BAE28629.1| unnamed protein product [Mus musculus]
          Length = 1373

 Score =  828 bits (2138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/660 (57%), Positives = 505/660 (76%), Gaps = 6/660 (0%)

Query: 368  MMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPD 427
            + E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P 
Sbjct: 504  IAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPM 563

Query: 428  TNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFN 487
            TNNA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFN
Sbjct: 564  TNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFN 623

Query: 488  IQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPR 544
            I YTI +IEE +P  F VK  ELF  +LF +ILEL D +LK    +D    CP+FH MPR
Sbjct: 624  IDYTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPR 683

Query: 545  FVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVK 604
            FVR L D GKE+L M+++L +       ++ E+   +       EWQ +A+  KGMI+  
Sbjct: 684  FVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTN 743

Query: 605  PGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLV 662
            PG+KP ++R+DQLDRE    ++  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+
Sbjct: 744  PGTKPSSVRIDQLDREQFNPEVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLL 803

Query: 663  ANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIP 722
            AN PK    DK++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++P
Sbjct: 804  ANSPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLP 863

Query: 723  VLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQ 782
            VL  H+R+H+ L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQ
Sbjct: 864  VLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQ 923

Query: 783  PEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHL 842
            P+YGDR++H  + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL
Sbjct: 924  PKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHL 983

Query: 843  FHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCF 902
            +++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCF
Sbjct: 984  YYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCF 1043

Query: 903  EALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPL 962
            EAL+GA++L+G ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+
Sbjct: 1044 EALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPV 1102

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            L++L   E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1103 LQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1162



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1139 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1198

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1199 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1244


>gi|441614801|ref|XP_003274996.2| PREDICTED: ribonuclease 3 [Nomascus leucogenys]
          Length = 1024

 Score =  827 bits (2137), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/811 (49%), Positives = 557/811 (68%), Gaps = 35/811 (4%)

Query: 230  DKWRMNNCSSEREMTEKFNTLAAMEADQIIEEE---------KKIWTRSAPADLYYTK-- 278
            D+W  N  S +    + + ++   E ++ + ++         K +W R   ++ YY+   
Sbjct: 20   DRWSDNQSSGK---DKNYTSIKEKEPEETVPDKNEEEEEELLKPVWIRCTHSENYYSSDP 76

Query: 279  --RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKC 336
              +  D +   T + R + D+FE              +      + K  R   +  K K 
Sbjct: 77   MDQVGDSTVVGTSRLRDLYDKFEE-------------ELGSRQEKAKAARPPWEPPKTKL 123

Query: 337  SHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDG 396
                 + + S        + S   D+E  + + E++ K+ HPDRLH ELW+ND G+MNDG
Sbjct: 124  DEDLESSSESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDG 183

Query: 397  PLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIE 456
            PLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR+TVSPPTNFL ++PTVIE
Sbjct: 184  PLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIE 243

Query: 457  HDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLF 516
            +D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE +P  F VK  ELF  +LF
Sbjct: 244  YDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLF 303

Query: 517  HEILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPV 573
             +ILEL D +LK    +D    CP+FH MPRFVR L D GKE+L M+++L +       +
Sbjct: 304  RDILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKAL 363

Query: 574  ISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDAV 631
            + E+   +       EWQ +A+  KGMI+  PG+KP ++R+DQLDRE    D+  +P  V
Sbjct: 364  VPEEEIANMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIV 423

Query: 632  HFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSK 691
            HFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK++LA +E+ LQ++R  + 
Sbjct: 424  HFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNT 483

Query: 692  MKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLL 751
            M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ L  L+  I Y FQ+R LL
Sbjct: 484  MRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLL 543

Query: 752  QLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLG 811
            QLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  + RK+GINTLINIMS+LG
Sbjct: 544  QLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLG 603

Query: 812  RKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLA 871
            +   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGGLATYR AIVQNQHLA LA
Sbjct: 604  QDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLA 663

Query: 872  KRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
            K++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G ++ A Q+F  +L+ D +
Sbjct: 664  KKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPD 723

Query: 932  VRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRS 991
            +R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT R+
Sbjct: 724  LR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRT 782

Query: 992  MGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            +G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 783  VGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 813



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 790 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 849

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 850 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 895


>gi|297463231|ref|XP_002702571.1| PREDICTED: ribonuclease 3 [Bos taurus]
 gi|297487774|ref|XP_002696435.1| PREDICTED: ribonuclease 3 isoform 1 [Bos taurus]
 gi|296475747|tpg|DAA17862.1| TPA: ribonuclease III, nuclear-like isoform 1 [Bos taurus]
          Length = 1367

 Score =  827 bits (2137), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/769 (52%), Positives = 541/769 (70%), Gaps = 23/769 (2%)

Query: 263  KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYT 318
            K +W R   ++ YY+     +  D +   T + R + D+FE              +    
Sbjct: 402  KPVWIRCTHSENYYSSDPMDQVGDSTVVGTSRLRDLYDKFEE-------------ELGSR 448

Query: 319  ANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHP 378
              + K  R   +  K K      + + S        + S   D+E  + + E++ K+ HP
Sbjct: 449  QEKAKAARPPWEPPKTKLDEDLESSSESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHP 508

Query: 379  DRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYR 438
            DRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR
Sbjct: 509  DRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYR 568

Query: 439  VTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEK 498
            +TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE 
Sbjct: 569  ITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEM 628

Query: 499  VPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKE 555
            +P  F VK  ELF  +LF +ILEL D +LK    +D    CP+FH MPRFVR L D GKE
Sbjct: 629  MPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKE 688

Query: 556  LLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVD 615
            +L M+++L +       ++ E+   +       EWQ +A+  KGMI+  PG+KP ++R+D
Sbjct: 689  VLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPGAKPSSVRID 748

Query: 616  QLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDK 673
            QLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK
Sbjct: 749  QLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDK 808

Query: 674  RRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRS 733
            ++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ 
Sbjct: 809  QKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQC 868

Query: 734  LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
            L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  
Sbjct: 869  LMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHM 928

Query: 794  NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
            + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGG
Sbjct: 929  HMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGG 988

Query: 854  LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
            LATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G
Sbjct: 989  LATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEG 1048

Query: 914  GIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSS 973
             ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + 
Sbjct: 1049 SLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEDAI 1107

Query: 974  GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1108 GVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1156



 Score = 63.5 bits (153), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1133 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1192

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1193 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1238


>gi|194676595|ref|XP_591998.4| PREDICTED: ribonuclease 3 isoform 2 [Bos taurus]
 gi|297487776|ref|XP_002696436.1| PREDICTED: ribonuclease 3 isoform 2 [Bos taurus]
 gi|296475748|tpg|DAA17863.1| TPA: ribonuclease III, nuclear-like isoform 2 [Bos taurus]
          Length = 1330

 Score =  827 bits (2137), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/769 (52%), Positives = 541/769 (70%), Gaps = 23/769 (2%)

Query: 263  KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYT 318
            K +W R   ++ YY+     +  D +   T + R + D+FE              +    
Sbjct: 365  KPVWIRCTHSENYYSSDPMDQVGDSTVVGTSRLRDLYDKFEE-------------ELGSR 411

Query: 319  ANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHP 378
              + K  R   +  K K      + + S        + S   D+E  + + E++ K+ HP
Sbjct: 412  QEKAKAARPPWEPPKTKLDEDLESSSESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHP 471

Query: 379  DRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYR 438
            DRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR
Sbjct: 472  DRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYR 531

Query: 439  VTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEK 498
            +TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE 
Sbjct: 532  ITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEM 591

Query: 499  VPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKE 555
            +P  F VK  ELF  +LF +ILEL D +LK    +D    CP+FH MPRFVR L D GKE
Sbjct: 592  MPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKE 651

Query: 556  LLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVD 615
            +L M+++L +       ++ E+   +       EWQ +A+  KGMI+  PG+KP ++R+D
Sbjct: 652  VLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPGAKPSSVRID 711

Query: 616  QLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDK 673
            QLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK
Sbjct: 712  QLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDK 771

Query: 674  RRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRS 733
            ++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ 
Sbjct: 772  QKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQC 831

Query: 734  LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
            L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  
Sbjct: 832  LMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHM 891

Query: 794  NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
            + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGG
Sbjct: 892  HMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGG 951

Query: 854  LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
            LATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G
Sbjct: 952  LATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEG 1011

Query: 914  GIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSS 973
             ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + 
Sbjct: 1012 SLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEDAI 1070

Query: 974  GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1071 GVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1119



 Score = 63.5 bits (153), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1096 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1155

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1156 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1201


>gi|37994704|gb|AAH60265.1| Rnasen protein, partial [Mus musculus]
          Length = 1231

 Score =  827 bits (2137), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/660 (57%), Positives = 505/660 (76%), Gaps = 6/660 (0%)

Query: 368  MMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPD 427
            + E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P 
Sbjct: 362  IAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPM 421

Query: 428  TNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFN 487
            TNNA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFN
Sbjct: 422  TNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFN 481

Query: 488  IQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPR 544
            I YTI +IEE +P  F VK  ELF  +LF +ILEL D +LK    +D    CP+FH MPR
Sbjct: 482  IDYTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPR 541

Query: 545  FVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVK 604
            FVR L D GKE+L M+++L +       ++ E+   +       EWQ +A+  KGMI+  
Sbjct: 542  FVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTN 601

Query: 605  PGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLV 662
            PG+KP ++R+DQLDRE    ++  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+
Sbjct: 602  PGTKPSSVRIDQLDREQFNPEVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLL 661

Query: 663  ANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIP 722
            AN PK    DK++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++P
Sbjct: 662  ANSPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLP 721

Query: 723  VLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQ 782
            VL  H+R+H+ L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQ
Sbjct: 722  VLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQ 781

Query: 783  PEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHL 842
            P+YGDR++H  + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL
Sbjct: 782  PKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHL 841

Query: 843  FHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCF 902
            +++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCF
Sbjct: 842  YYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCF 901

Query: 903  EALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPL 962
            EAL+GA++L+G ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+
Sbjct: 902  EALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPV 960

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            L++L   E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 961  LQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1020



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 997  LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1056

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1057 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1102


>gi|57530438|ref|NP_001006379.1| ribonuclease 3 [Gallus gallus]
 gi|53134951|emb|CAG32380.1| hypothetical protein RCJMB04_24a21 [Gallus gallus]
          Length = 1336

 Score =  826 bits (2134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/660 (57%), Positives = 500/660 (75%), Gaps = 6/660 (0%)

Query: 368  MMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPD 427
            + E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH IY GE+    C P 
Sbjct: 467  IAEIKRKKAHPDRLHEELWYNDPGQMNDGPLCKCSAKARRTGIRHGIYPGEEPIKPCRPM 526

Query: 428  TNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFN 487
            TNNA +LYHYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+FSH PL  +P CKVIRFN
Sbjct: 527  TNNAGRLYHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFSHAPLTNIPLCKVIRFN 586

Query: 488  IQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSA---NNKDGCPQFHIMPR 544
            I YTI +IEE +P  F VK  ELF +YLF +ILEL D  LK     N+   CP+FH MPR
Sbjct: 587  IDYTIHFIEEMMPENFCVKGLELFSSYLFKDILELYDWHLKGPSVENDSVSCPRFHFMPR 646

Query: 545  FVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVK 604
            FVR L D GKE+L M+++L +       ++ E+   +       EWQ +A+  KGMI+  
Sbjct: 647  FVRFLPDGGKEVLSMHQILLYLLRCNKALVPEEEIANMLQWEELEWQKYAEECKGMIVTS 706

Query: 605  PGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLV 662
            PG KP ++R+DQLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+
Sbjct: 707  PGMKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLL 766

Query: 663  ANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIP 722
            AN PK    DK++L+ +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++P
Sbjct: 767  ANSPKVKQADKQKLSQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLP 826

Query: 723  VLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQ 782
            VL  H+R+H+ L  L+  I Y F++R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQ
Sbjct: 827  VLTHHIRYHQCLMHLDKLIGYTFRDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQ 886

Query: 783  PEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHL 842
            P+YGDR++H  + RK+GINTLINIMS+LG+     S I HNERLEFLGDAVVEF+TS+HL
Sbjct: 887  PKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPAPSRINHNERLEFLGDAVVEFLTSVHL 946

Query: 843  FHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCF 902
            +++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCF
Sbjct: 947  YYLFPTLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCF 1006

Query: 903  EALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPL 962
            EAL+GA++L+G ++ A Q+F  +L+ D ++R   W+ YP HPLQ QE + DRQ +E SP+
Sbjct: 1007 EALIGAVYLEGSLEEAKQLFGRLLFNDKDLR-DVWLNYPLHPLQLQESNTDRQLIETSPV 1065

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            L++L   E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1066 LQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1125



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G+++F
Sbjct: 1102 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEF 1161

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1162 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1207


>gi|297675037|ref|XP_002815506.1| PREDICTED: ribonuclease 3 [Pongo abelii]
          Length = 1374

 Score =  826 bits (2134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/811 (49%), Positives = 555/811 (68%), Gaps = 35/811 (4%)

Query: 230  DKWRMNNCSSEREMTEKFNTLAAMEADQIIEEE---------KKIWTRSAPADLYYTK-- 278
            D+W  N  S +    + + ++   E ++ + ++         K +W R   ++ YY+   
Sbjct: 370  DRWSDNQSSGK---DKNYTSIKEKEPEETMPDKNEEEEEELLKPVWIRCTHSENYYSSDP 426

Query: 279  --RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKC 336
              +  D +   T + R + D+FE              +      + K  R   +  K K 
Sbjct: 427  MDQVGDSTVVGTSRLRDLYDKFEE-------------ELGSRQEKAKAARPPWEPPKTKL 473

Query: 337  SHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDG 396
                 + + S        + S   D+E  + + E++ K+ HPDRLH ELW+ND G+MNDG
Sbjct: 474  DEDLESSSESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDG 533

Query: 397  PLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIE 456
            PLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR+TVSPPTNFL ++PTVIE
Sbjct: 534  PLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIE 593

Query: 457  HDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLF 516
            +D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE +P  F VK  ELF  +LF
Sbjct: 594  YDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLF 653

Query: 517  HEILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPV 573
             +ILEL D +LK    +D    CP+FH MPRFVR L D GKE+L M+++L +       +
Sbjct: 654  RDILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKAL 713

Query: 574  ISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDAV 631
            + E+   +       EWQ +A+  KGMI+  PG+KP ++R+DQLDRE    D+  +P  V
Sbjct: 714  VPEEEIANMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIV 773

Query: 632  HFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSK 691
            HFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK+  A +E+ LQ++R  + 
Sbjct: 774  HFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDKQEAAQREEALQKIRQKNT 833

Query: 692  MKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLL 751
            M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ L  L+  I Y FQ+R LL
Sbjct: 834  MRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLL 893

Query: 752  QLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLG 811
            QLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  + RK+GINTLINIMS+LG
Sbjct: 894  QLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLG 953

Query: 812  RKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLA 871
            +   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGGLATYR AIVQNQHLA LA
Sbjct: 954  QDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLA 1013

Query: 872  KRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
            K++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G ++ A Q+F  +L+ D +
Sbjct: 1014 KKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPD 1073

Query: 932  VRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRS 991
            +R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT R+
Sbjct: 1074 LR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRT 1132

Query: 992  MGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            +G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1133 VGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1163



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1140 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1199

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1200 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1245


>gi|404501514|ref|NP_001101125.2| ribonuclease 3 [Rattus norvegicus]
 gi|392345448|ref|XP_003749268.1| PREDICTED: ribonuclease 3 [Rattus norvegicus]
          Length = 1373

 Score =  826 bits (2133), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/660 (57%), Positives = 505/660 (76%), Gaps = 6/660 (0%)

Query: 368  MMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPD 427
            + E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P 
Sbjct: 504  IAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPM 563

Query: 428  TNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFN 487
            TNNA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFN
Sbjct: 564  TNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFN 623

Query: 488  IQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPR 544
            I YTI +IEE +P  F VK  ELF  +LF +ILEL D +LK    +D    CP+FH MPR
Sbjct: 624  IDYTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPR 683

Query: 545  FVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVK 604
            FVR L D GKE+L M+++L +       ++ E+   +       EWQ +A+  KGMI+  
Sbjct: 684  FVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTN 743

Query: 605  PGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLV 662
            PG+KP ++R+DQLDRE    ++  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+
Sbjct: 744  PGTKPSSVRIDQLDREQFNPEVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLL 803

Query: 663  ANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIP 722
            AN PK    DK++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++P
Sbjct: 804  ANSPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLP 863

Query: 723  VLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQ 782
            VL  H+R+H+ L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQ
Sbjct: 864  VLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQ 923

Query: 783  PEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHL 842
            P+YGDR++H  + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL
Sbjct: 924  PKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHL 983

Query: 843  FHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCF 902
            +++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCF
Sbjct: 984  YYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCF 1043

Query: 903  EALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPL 962
            EAL+GA++L+G ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+
Sbjct: 1044 EALIGAVYLEGTLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPV 1102

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            L++L   E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1103 LQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1162



 Score = 63.9 bits (154), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1139 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1198

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1199 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1244


>gi|34784428|gb|AAH57687.1| Rnasen protein, partial [Mus musculus]
          Length = 942

 Score =  824 bits (2129), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/660 (57%), Positives = 505/660 (76%), Gaps = 6/660 (0%)

Query: 368  MMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPD 427
            + E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P 
Sbjct: 73   IAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPM 132

Query: 428  TNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFN 487
            TNNA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFN
Sbjct: 133  TNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFN 192

Query: 488  IQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPR 544
            I YTI +IEE +P  F VK  ELF  +LF +ILEL D +LK    +D    CP+FH MPR
Sbjct: 193  IDYTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPR 252

Query: 545  FVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVK 604
            FVR L D GKE+L M+++L +       ++ E+   +       EWQ +A+  KGMI+  
Sbjct: 253  FVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTN 312

Query: 605  PGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLV 662
            PG+KP ++R+DQLDRE    ++  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+
Sbjct: 313  PGTKPSSVRIDQLDREQFNPEVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLL 372

Query: 663  ANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIP 722
            AN PK    DK++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++P
Sbjct: 373  ANSPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLP 432

Query: 723  VLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQ 782
            VL  H+R+H+ L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQ
Sbjct: 433  VLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQ 492

Query: 783  PEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHL 842
            P+YGDR++H  + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL
Sbjct: 493  PKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHL 552

Query: 843  FHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCF 902
            +++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCF
Sbjct: 553  YYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCF 612

Query: 903  EALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPL 962
            EAL+GA++L+G ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+
Sbjct: 613  EALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPV 671

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            L++L   E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 672  LQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 731



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G+++
Sbjct: 707 TLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE 766

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
           + +    +     +  K  +A+  E+ + AL++D  ++
Sbjct: 767 YAITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLE 803


>gi|160333099|ref|NP_001103942.1| ribonuclease 3 [Danio rerio]
 gi|124481653|gb|AAI33135.1| Zgc:158612 [Danio rerio]
          Length = 1289

 Score =  823 bits (2126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/903 (47%), Positives = 586/903 (64%), Gaps = 38/903 (4%)

Query: 143  HRDDESNQRRNRSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKSRS-EV 201
            H   E   R NR     K +           SP R +++  R R  S+ RS  + R  + 
Sbjct: 196  HSYSEYGSRHNREFGGEKRDRGCSSERRRSDSPRRCKSDYDRGRVSSRHRSRDRYRHRDD 255

Query: 202  PRQACARRSR--SRSRILSPKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQII 259
            P    + R R  +R+R  S +R    +    + R +  SS RE +   N+  + EA++I 
Sbjct: 256  PGSPSSDRHRKHARNRSGSRERKRRRVEEDKERRTDGSSSSRERS--VNSSRSREAEEIT 313

Query: 260  -----------EEEKKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVI-Q 303
                       E  K  W R   A+ YY+     +  D +   T K R + + FE  + +
Sbjct: 314  IDRHEEDRGQEELHKPAWIRCTHAENYYSNDPMDQVGDSTVVGTSKLRDLYERFEEELGK 373

Query: 304  NFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAE 363
                 K  +P+++              K K       S+      S+    + S   D+E
Sbjct: 374  RQERAKSIRPKWE------------PPKTKLDQDQDESSSESECESDGGGSTCSSSSDSE 421

Query: 364  EDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAF 423
              + + E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE     
Sbjct: 422  VFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEQPVKQ 481

Query: 424  CNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKV 483
            C P  NNA KL+HYR+TVSPPTNFL ++PTVIE+D+ E++FEGFS FSH PL  +P C+V
Sbjct: 482  CRPMNNNAGKLFHYRITVSPPTNFLTDRPTVIEYDDHEYLFEGFSCFSHTPLTSIPLCRV 541

Query: 484  IRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSA--NNKDGCPQFHI 541
            IRFNI YTI +IEE  P  + VK  ELF +YLF +ILEL D +L     N+  GC +FH 
Sbjct: 542  IRFNIDYTIHFIEEMAPENYCVKGLELFSSYLFKDILELYDWNLTDPEENSPLGCQRFHF 601

Query: 542  MPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMI 601
            MPRFVR L D GKE+L M++VL +   S  P++ E+   +       EWQ +A+  KGMI
Sbjct: 602  MPRFVRFLPDGGKEVLSMHQVLLYLLHSSKPLVPEEEIANMLQWEELEWQKYAEECKGMI 661

Query: 602  IVKPGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLR 659
            +  PG KP ++R+DQLDRE   + +  +P  VHFG RP QL +AG P +QKLWK YVKLR
Sbjct: 662  VTNPGMKPSSVRIDQLDREQFNSSVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLR 721

Query: 660  HLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAM 719
            HL+AN PK    DK++L  +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM
Sbjct: 722  HLLANSPKVKQIDKQKLMQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAM 781

Query: 720  LIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCG 779
            ++PVL  H+R+H+ L  L+  I Y F+ R LLQLA+THPS+  NFG NPDHARNSLSNCG
Sbjct: 782  MLPVLTHHIRYHQCLMHLDKLIGYMFKERCLLQLAMTHPSHHLNFGMNPDHARNSLSNCG 841

Query: 780  VRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITS 839
            +RQP+YGDR++H    RK+GINTLINIMS+LG+   + S I HNERLEFLGDAVVEF+TS
Sbjct: 842  IRQPKYGDRKVHHMYMRKKGINTLINIMSRLGQDDPSPSRINHNERLEFLGDAVVEFLTS 901

Query: 840  IHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMA 899
            +HL+H+FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMA
Sbjct: 902  VHLYHLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMA 961

Query: 900  NCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQ 959
            NCFEAL+GA++L+GG++ A  +F  +L+   ++R + W+ YP HPLQ QEP  DRQ +E 
Sbjct: 962  NCFEALIGAVYLEGGLEEAKDLFGRLLFNTEDMR-EVWLNYPPHPLQVQEPLTDRQLIES 1020

Query: 960  SPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSD 1019
            SP+L++L   E + GV+F H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++
Sbjct: 1021 SPVLQKLTNFEDAIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATE 1080

Query: 1020 YLY 1022
            YL+
Sbjct: 1081 YLF 1083



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G+++F
Sbjct: 1060 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEF 1119

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1120 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEFV-HTFMNVCF 1165


>gi|29123082|gb|AAO65849.1| ribonuclease III [Mus musculus]
          Length = 1021

 Score =  823 bits (2126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/769 (51%), Positives = 540/769 (70%), Gaps = 23/769 (2%)

Query: 263  KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYT 318
            K +W R   ++ YY+     +  D +   T   R + D+FE  + N              
Sbjct: 56   KPVWIRCTHSESYYSSDPMDQVGDSTVVGTSGLRDLYDKFEEELGN-------------R 102

Query: 319  ANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHP 378
              + K  R   +  K K      + + S        + S   D+E  + + E++ K+ HP
Sbjct: 103  QEKAKAARPPWEPPKTKLDEDLESSSESECETDDDSTCSSSSDSEVFDVIAEIKRKKAHP 162

Query: 379  DRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYR 438
            DRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR
Sbjct: 163  DRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYR 222

Query: 439  VTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEK 498
            +TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE 
Sbjct: 223  ITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEM 282

Query: 499  VPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKE 555
            +P  F VK  ELF  +LF +ILEL D +LK    +D    CP+FH MPRFVR L D GKE
Sbjct: 283  MPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKE 342

Query: 556  LLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVD 615
            +L M+++L +       ++ E+   +       EWQ +A+  KGMI+  PG+KP ++R+D
Sbjct: 343  VLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRID 402

Query: 616  QLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDK 673
            QLDRE    ++  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK
Sbjct: 403  QLDREQFNPEVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDK 462

Query: 674  RRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRS 733
            ++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ 
Sbjct: 463  QKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQC 522

Query: 734  LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
            L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  
Sbjct: 523  LMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHM 582

Query: 794  NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
            + RK+GINTLINI+S+LG+   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGG
Sbjct: 583  HMRKKGINTLINIVSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGG 642

Query: 854  LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
            LATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G
Sbjct: 643  LATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEG 702

Query: 914  GIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSS 973
             ++ A Q+F  +L+ D  +R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + 
Sbjct: 703  SLEEAKQLFGRLLFNDPGLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAI 761

Query: 974  GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 762  GVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 810



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G+++
Sbjct: 786 TLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE 845

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
           + +    +     +  K  +A+  E+ + AL++D  ++
Sbjct: 846 YAVTNDKTKRPVALRTK-TLADLLESFIAALYIDKDLE 882


>gi|391334467|ref|XP_003741625.1| PREDICTED: ribonuclease 3-like [Metaseiulus occidentalis]
          Length = 1180

 Score =  818 bits (2113), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/848 (51%), Positives = 581/848 (68%), Gaps = 32/848 (3%)

Query: 188  RSKSRSESKSRSEVPRQACARRSRSRSRILSPKRSGEALSNLDKWRMNNCSSEREMTEKF 247
            +SK  +E +SR +      AR   SRS+  +  ++ + L    ++  +N SSE E +EK 
Sbjct: 199  KSKQAAEGRSRRD------AREENSRSKKSASNKTEDDL----RFSSDNYSSEDE-SEKV 247

Query: 248  NTLAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDSYEC--TQKTRTICDEF-ESVIQN 304
              L+  E D  +E     +TR   A++Y+ ++ E     C  T++   + +EF E++++ 
Sbjct: 248  PELS--EDDYRMEIAN--YTRCLAAEVYFKRQGE----MCCGTERFNKMLEEFGETLLKR 299

Query: 305  FVSVKESKPQFDYTANRKKIKRTNRKKIK----RKCSHCASNPTVSSGSESSSDSSSGEE 360
                K ++  ++    +  I    +KK K    R          V +  +S S S S   
Sbjct: 300  NERAKATQKPYERPKRKPHICMHFKKKPKVMHHRHDQKFTKPVLVLTSEDSDSSSESDWC 359

Query: 361  DAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDE 420
             ++++  + EL++K+ HP RLH ELWFND GEMNDGPLCRCS KSRRSGIRHN + GE  
Sbjct: 360  SSDDEENLTELEIKKQHPYRLHEELWFNDSGEMNDGPLCRCSIKSRRSGIRHNCFPGETA 419

Query: 421  -QAFCNPDTNNADKLYHYRVTVSPPTNFLINK-PTVIEHDNQEFIFEGFSLFSHHPL-EK 477
                C+P+ NNADKL+HYR+ +SP TNF++ K PTVI+HD QE+IFEGFSLFSH+ L E 
Sbjct: 420  PNPACDPNLNNADKLFHYRIFISPKTNFVLKKFPTVIKHDKQEYIFEGFSLFSHYKLPEN 479

Query: 478  LPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCP 537
            LP+C++IR+NI+Y I YI E+ P+ FTV   +L   YLF EILELVD++ K  +   GCP
Sbjct: 480  LPSCRIIRYNIEYLIAYIPEECPDNFTVGGLDLLTEYLFKEILELVDVNWKLNDQDGGCP 539

Query: 538  QFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFAD-G 596
            QFH+MPRFVR L + GKELL +  V+     +  P++  +        S  ++ D+ +  
Sbjct: 540  QFHLMPRFVRPLVEKGKELLSLNYVIHHLLRNSKPLVPAEAIPRLVRFSDNDYIDYVETN 599

Query: 597  VKGMIIVKPGSKPCAMRVDQLDRES--ETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKG 654
            VK  I+VKPG KPCAMRVDQLDRE+  E    +P+ +HFG RP QL +AG+P +QK +K 
Sbjct: 600  VKAQIVVKPGMKPCAMRVDQLDRENSLEKATEFPEIIHFGMRPAQLSYAGNPQYQKAFKD 659

Query: 655  YVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDM 714
              K +  +A KP+    DK +LA KE+ + E++    +KR VTV  SS GF RTGI  D+
Sbjct: 660  LTKFKKYLATKPRVDYRDKAKLAKKEKAVMELKQAKDLKRDVTVVASSAGFLRTGIRSDV 719

Query: 715  VQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNS 774
            VQHA++IPVLI HLRFHRSL+ LE  ++ KF +R LLQLALTHPSYRENFGTNPDHARN+
Sbjct: 720  VQHALIIPVLIGHLRFHRSLHELEKNLKLKFNDRLLLQLALTHPSYRENFGTNPDHARNA 779

Query: 775  LSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVV 834
            +SNCG+RQP+YGDRR+ +  +RKRGI  L++IMS+L + + T S + H ERLEFLGDAV+
Sbjct: 780  MSNCGMRQPKYGDRRVLYLYSRKRGIKMLLSIMSRLAKDIETASTMHHYERLEFLGDAVI 839

Query: 835  EFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVEL 894
            EF++SIHLFH+FP++EEGGLATYRAA+VQNQHLA LAK++ L++FMLYAHGSDLCH++EL
Sbjct: 840  EFLSSIHLFHMFPEVEEGGLATYRAALVQNQHLAILAKKLQLDEFMLYAHGSDLCHDLEL 899

Query: 895  KHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDR 954
            KHAMAN FEALMGA+FLD GI+  D+VF   L+  +     +W  Y +HPLQ QEPDGDR
Sbjct: 900  KHAMANSFEALMGAIFLDHGINEVDRVFGETLFGHDPKLLVRWRNYSRHPLQLQEPDGDR 959

Query: 955  QWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQ 1014
             W+E  P+L+++   E   GV F HIRLLAR FT RS+G+ NLTLGSNQRLEFLGDTVLQ
Sbjct: 960  HWIEHYPILQKMTVFEKKIGVEFTHIRLLARAFTHRSVGFNNLTLGSNQRLEFLGDTVLQ 1019

Query: 1015 LITSDYLY 1022
            L++S+YLY
Sbjct: 1020 LVSSEYLY 1027



 Score = 63.2 bits (152), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 6/117 (5%)

Query: 823  NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
            N+RLEFLGD V++ ++S +L+  FP+  EG L+  R++IV N+  + +   +G+ +  LY
Sbjct: 1007 NQRLEFLGDTVLQLVSSEYLYKFFPEHHEGHLSLLRSSIVNNRTQSVVHDDLGMLECSLY 1066

Query: 883  AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE--VRFKQW 937
               +     +++K   A+  EA +GAL++D G++   +    V +   E  +R + W
Sbjct: 1067 PSSAS---GLKMKDR-ADILEAFLGALYVDKGLEYCRRFCQVVFFPRLEQFIRNQDW 1119


>gi|224045068|ref|XP_002199233.1| PREDICTED: ribonuclease 3 [Taeniopygia guttata]
          Length = 1338

 Score =  815 bits (2104), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/662 (56%), Positives = 501/662 (75%), Gaps = 8/662 (1%)

Query: 368  MMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPD 427
            + E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH IY GE+    C P 
Sbjct: 467  IAEIKRKKAHPDRLHEELWYNDPGQMNDGPLCKCSAKARRTGIRHGIYPGEEPIKPCRPM 526

Query: 428  TNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFN 487
            TNNA +LYHYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFN
Sbjct: 527  TNNAGRLYHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFN 586

Query: 488  IQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSA---NNKDGCPQFHIMPR 544
            I YTI +IEE +P  F V+  ELF +YLF +ILEL D +LK     N+   CP++H MPR
Sbjct: 587  IDYTIHFIEEMMPENFCVRGLELFSSYLFKDILELYDWNLKGPSLENDSVSCPRYHFMPR 646

Query: 545  FVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVK 604
            FVR L D GKE+L M+++L +       ++ E+   +       EWQ +A+  KGMI+  
Sbjct: 647  FVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQTYAEDCKGMIVTS 706

Query: 605  PGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAG--SPDFQKLWKGYVKLRH 660
            PG KP ++R+DQLDRE    D+  +P  VHFG RP QL +AG  S  +QKLWK YVKLRH
Sbjct: 707  PGMKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDLSKIYQKLWKSYVKLRH 766

Query: 661  LVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAML 720
            L+AN PK    DK++L+ +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM+
Sbjct: 767  LLANSPKVKQADKQKLSQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMM 826

Query: 721  IPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGV 780
            +PVL  H+R+H+ L  L+  I Y F++R LLQLA+THPS+  NFG NPDHARNSLSNCG+
Sbjct: 827  LPVLTHHVRYHQCLMHLDKLIGYTFRDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGI 886

Query: 781  RQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSI 840
            RQP+YGDR++H  + RK+GINTLINIMS+LG+     S I HNERLEFLGDAVVEF+TS+
Sbjct: 887  RQPKYGDRKVHHIHMRKKGINTLINIMSRLGQDDPAPSRINHNERLEFLGDAVVEFLTSV 946

Query: 841  HLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMAN 900
            HL+++FP +EEGGLATYR AIVQNQHLA LAK++ LE FMLYAHG DLC E +L+HAMAN
Sbjct: 947  HLYYLFPTLEEGGLATYRTAIVQNQHLAMLAKKLELERFMLYAHGPDLCRESDLRHAMAN 1006

Query: 901  CFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQS 960
            CFEAL+GA++L+G ++ A Q+F  +L+ + ++R   W+ YP HPLQ QE + DRQ +E S
Sbjct: 1007 CFEALIGAVYLEGSLEEAKQLFGRLLFNEKDLR-DVWLNYPLHPLQLQESNTDRQLIETS 1065

Query: 961  PLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDY 1020
            P+L++L   E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++Y
Sbjct: 1066 PVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEY 1125

Query: 1021 LY 1022
            L+
Sbjct: 1126 LF 1127



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 60/97 (61%), Gaps = 1/97 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G+++F
Sbjct: 1104 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEF 1163

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
             +    +     +  K  +A+  E+ + AL++D  ++
Sbjct: 1164 AITNDKTKRPVTLRTK-TLADLLESFIAALYIDKDLE 1199


>gi|380812086|gb|AFE77918.1| ribonuclease 3 isoform 2 [Macaca mulatta]
 gi|384946624|gb|AFI36917.1| ribonuclease 3 isoform 2 [Macaca mulatta]
          Length = 1329

 Score =  813 bits (2099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/856 (48%), Positives = 567/856 (66%), Gaps = 53/856 (6%)

Query: 185  RRSRSKSRSESKSRSEVPRQACARRSRSRSRILSPKRSGEALSNLDKWRMNNCSSEREMT 244
            RRS S  RS  K           +RS SRS     KR+       D+W  N  S +    
Sbjct: 298  RRSPSLERSYKKE---------YKRSGSRSPSREKKRA-RWEEEKDRWSDNQSSGK---D 344

Query: 245  EKFNTLAAMEADQIIEEE---------KKIWTRSAPADLYYTK----RTEDDSYECTQKT 291
            + + ++   E ++   ++         K +W R   ++ YY+     +  D +   T + 
Sbjct: 345  KNYTSIKEKEPEETTPDKNEEEEEELLKPVWIRCTHSENYYSSDPMDQVGDSTVVGTSRL 404

Query: 292  RTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSES 351
            R + D+FE              +      + K  R   +  K K      + + S     
Sbjct: 405  RDLYDKFEE-------------ELGSRQEKAKAARPPWEPPKTKLDEDLESSSESECESD 451

Query: 352  SSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIR 411
               + S   D+E  + + E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIR
Sbjct: 452  EDSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIR 511

Query: 412  HNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFS 471
            H+IY GE+    C P TNNA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+
Sbjct: 512  HSIYPGEEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFA 571

Query: 472  HHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSAN 531
            H PL  +P CKVIRFNI YTI +IEE +P  F VK  ELF  +LF +ILEL D +LK   
Sbjct: 572  HAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPL 631

Query: 532  NKDG---CPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTY 588
             +D    CP+FH MPRFVR L D GKE+L M+++L +       ++ E+   +       
Sbjct: 632  FEDSPPCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEEL 691

Query: 589  EWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSP 646
            EWQ +A+  KGMI+  PG+KP ++R+DQLDRE    D+  +P  VHFG RP Q       
Sbjct: 692  EWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQ------- 744

Query: 647  DFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFY 706
             +QKLWK YVKLRHL+AN PK    DK++LA +E+ LQ++R  + M+R VTV +SS+GF+
Sbjct: 745  -YQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFW 803

Query: 707  RTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGT 766
            +TGI  D+ QHAM++PVL  H+R+H+ L  L+  I Y FQ+R LLQLA+THPS+  NFG 
Sbjct: 804  KTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGM 863

Query: 767  NPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERL 826
            NPDHARNSLSNCG+RQP+YGDR++H  + RK+GINTLINIMS+LG+   T S I HNERL
Sbjct: 864  NPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERL 923

Query: 827  EFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGS 886
            EFLGDAVVEF+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG 
Sbjct: 924  EFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGP 983

Query: 887  DLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQ 946
            DLC E +L+HAMANCFEAL+GA++L+G ++ A Q+F  +L+ D ++R + W+ YP HPLQ
Sbjct: 984  DLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQ 1042

Query: 947  EQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLE 1006
             QEP+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT R++G+ +LTLG NQR+E
Sbjct: 1043 LQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRME 1102

Query: 1007 FLGDTVLQLITSDYLY 1022
            FLGD+++QL+ ++YL+
Sbjct: 1103 FLGDSIMQLVATEYLF 1118



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1095 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1154

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1155 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1200


>gi|345798933|ref|XP_536514.3| PREDICTED: ribonuclease 3 isoform 1 [Canis lupus familiaris]
          Length = 1336

 Score =  808 bits (2088), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/769 (51%), Positives = 534/769 (69%), Gaps = 23/769 (2%)

Query: 263  KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYT 318
            K +W R   ++ YY+     +  D +   T + R + D+FE              +    
Sbjct: 371  KPVWIRCTHSENYYSSDPMDQVGDSTVVGTSRLRDLYDKFEE-------------ELGSR 417

Query: 319  ANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHP 378
              + K  R   +  K K      + + S        + S   D+E  + + E++ K+ HP
Sbjct: 418  QEKAKAARPPWEPPKTKLDEDLESSSESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHP 477

Query: 379  DRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYR 438
            DRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR
Sbjct: 478  DRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYR 537

Query: 439  VTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEK 498
            +TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE 
Sbjct: 538  ITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEM 597

Query: 499  VPNGFTVKDTELFFNYLFHEILELVDLDLKSA---NNKDGCPQFHIMPRFVRELKDNGKE 555
            +P  F VK  ELF  +LF +ILEL D +LK     +N   CP+FH MPRFVR L D  KE
Sbjct: 598  MPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDNPPCCPRFHFMPRFVRFLPDGEKE 657

Query: 556  LLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVD 615
            +L + + L +      P++ ++   +       E Q +A   KGM    P +KP ++R+D
Sbjct: 658  VLSIPQFLLYLLGGSKPLVPKEEFPNLFQGEKLEGQKYAGESKGMFFPIPETKPSSVRID 717

Query: 616  QLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDK 673
            QLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK
Sbjct: 718  QLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDK 777

Query: 674  RRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRS 733
            ++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ 
Sbjct: 778  QKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQC 837

Query: 734  LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
            L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  
Sbjct: 838  LMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHM 897

Query: 794  NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
            + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGG
Sbjct: 898  HMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGG 957

Query: 854  LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
            LATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G
Sbjct: 958  LATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEG 1017

Query: 914  GIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSS 973
             ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + 
Sbjct: 1018 SLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAI 1076

Query: 974  GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1077 GVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1125



 Score = 63.9 bits (154), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1102 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1161

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1162 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1207


>gi|345798931|ref|XP_854135.2| PREDICTED: ribonuclease 3 isoform 2 [Canis lupus familiaris]
          Length = 1373

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/769 (51%), Positives = 534/769 (69%), Gaps = 23/769 (2%)

Query: 263  KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYT 318
            K +W R   ++ YY+     +  D +   T + R + D+FE              +    
Sbjct: 408  KPVWIRCTHSENYYSSDPMDQVGDSTVVGTSRLRDLYDKFEE-------------ELGSR 454

Query: 319  ANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHP 378
              + K  R   +  K K      + + S        + S   D+E  + + E++ K+ HP
Sbjct: 455  QEKAKAARPPWEPPKTKLDEDLESSSESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHP 514

Query: 379  DRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYR 438
            DRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR
Sbjct: 515  DRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYR 574

Query: 439  VTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEK 498
            +TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE 
Sbjct: 575  ITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEM 634

Query: 499  VPNGFTVKDTELFFNYLFHEILELVDLDLKSA---NNKDGCPQFHIMPRFVRELKDNGKE 555
            +P  F VK  ELF  +LF +ILEL D +LK     +N   CP+FH MPRFVR L D  KE
Sbjct: 635  MPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDNPPCCPRFHFMPRFVRFLPDGEKE 694

Query: 556  LLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVD 615
            +L + + L +      P++ ++   +       E Q +A   KGM    P +KP ++R+D
Sbjct: 695  VLSIPQFLLYLLGGSKPLVPKEEFPNLFQGEKLEGQKYAGESKGMFFPIPETKPSSVRID 754

Query: 616  QLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDK 673
            QLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK
Sbjct: 755  QLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDK 814

Query: 674  RRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRS 733
            ++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ 
Sbjct: 815  QKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQC 874

Query: 734  LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
            L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  
Sbjct: 875  LMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHM 934

Query: 794  NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
            + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGG
Sbjct: 935  HMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGG 994

Query: 854  LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
            LATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G
Sbjct: 995  LATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEG 1054

Query: 914  GIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSS 973
             ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + 
Sbjct: 1055 SLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAI 1113

Query: 974  GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1114 GVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1162



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1139 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1198

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1199 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1244


>gi|392338628|ref|XP_003753585.1| PREDICTED: ribonuclease 3 [Rattus norvegicus]
          Length = 940

 Score =  807 bits (2084), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/660 (56%), Positives = 500/660 (75%), Gaps = 14/660 (2%)

Query: 368  MMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPD 427
            + E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P 
Sbjct: 79   IAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPM 138

Query: 428  TNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFN 487
            TNNA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFN
Sbjct: 139  TNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFN 198

Query: 488  IQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPR 544
            I YTI +IEE +P  F VK  ELF  +LF +ILEL D +LK    +D    CP+FH MPR
Sbjct: 199  IDYTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPR 258

Query: 545  FVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVK 604
            FVR L D GKE+L M+++L +       ++ E+   +       EWQ +A+  KGMI+  
Sbjct: 259  FVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTN 318

Query: 605  PGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLV 662
            PG+KP ++R+DQLDRE    ++  +P  VHFG RP Q        +QKLWK YVKLRHL+
Sbjct: 319  PGTKPSSVRIDQLDREQFNPEVITFPIIVHFGIRPAQ--------YQKLWKSYVKLRHLL 370

Query: 663  ANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIP 722
            AN PK    DK++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++P
Sbjct: 371  ANSPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLP 430

Query: 723  VLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQ 782
            VL  H+R+H+ L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQ
Sbjct: 431  VLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQ 490

Query: 783  PEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHL 842
            P+YGDR++H  + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL
Sbjct: 491  PKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHL 550

Query: 843  FHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCF 902
            +++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCF
Sbjct: 551  YYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCF 610

Query: 903  EALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPL 962
            EAL+GA++L+G ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+
Sbjct: 611  EALIGAVYLEGTLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPV 669

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            L++L   E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 670  LQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 729



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G+++
Sbjct: 705 TLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE 764

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
           + +    +     +  K  +A+  E+ + AL++D  ++
Sbjct: 765 YAITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLE 801


>gi|351694357|gb|EHA97275.1| Ribonuclease 3 [Heterocephalus glaber]
          Length = 1388

 Score =  805 bits (2079), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/918 (45%), Positives = 576/918 (62%), Gaps = 95/918 (10%)

Query: 170  NSKSSPTRTETNLKRRRSRSKSRSESKSRSEVPRQACARRSRSRSRILSPKRSGEALSNL 229
            +++ SP+  E + K+   RS SRS S+ +        AR    + R    + SG      
Sbjct: 290  DNRRSPS-LERSYKKEYKRSGSRSPSREKKR------ARWEEEKDRWSDSQGSG------ 336

Query: 230  DKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTK----RTEDDSY 285
             K +      E+E  E     +  E ++++   K +W R   ++ YY+     +  D + 
Sbjct: 337  -KEKNYTSMKEKEPEETLPDKSEEEDEELL---KPVWIRCTHSENYYSSDPMDQVGDSTV 392

Query: 286  ECTQKTRTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTV 345
              T + R + D+FE              +      + K  R   +  K K      + + 
Sbjct: 393  VGTSRLRDLYDKFEE-------------ELGSRQEKAKAARPPWEPPKTKLDEDLESSSE 439

Query: 346  SSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKS 405
            S        + S   D+E  + + E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+
Sbjct: 440  SECESDEDSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKA 499

Query: 406  RRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFE 465
            RR+GIRH+IY GE+    C P TNNA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFE
Sbjct: 500  RRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFE 559

Query: 466  GFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDL 525
            GFS+F+H PL  +P CKVIRFNI YTI +IEE +P  F VK  ELF  +LF +ILEL D 
Sbjct: 560  GFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDW 619

Query: 526  DLKSANNKDG---CPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSK 582
            +LK    +D    CP+FH MPRFVR L D GKE+L M+++L +       ++ E+   + 
Sbjct: 620  NLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANM 679

Query: 583  DDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQL 640
                  EWQ +A+  KGMI+  PG+KP ++R+DQLDRE    D+  +P  VHFG RP QL
Sbjct: 680  LQWEELEWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQL 739

Query: 641  CFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAI 700
             +AG P +QKLWK YVKLRHL+AN PK    DK++LA +E+ LQ++R  + M+R VTV +
Sbjct: 740  SYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVEL 799

Query: 701  SSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSY 760
            SS+GF++TGI  D+ QHAM++PVL  H+R+H+ L  L+  I Y FQ+R LLQLA+THPS+
Sbjct: 800  SSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSH 859

Query: 761  RENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNI 820
              NFG NPDHARNSLSNCG+RQP+YGDR++H  + RK+GINTLINIMS+LG+   T S I
Sbjct: 860  HLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRI 919

Query: 821  THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
             HNERLEFLGDAVVEF+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FM
Sbjct: 920  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 979

Query: 881  LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV------------------- 921
            LYAHG DLC E +L+HAMANCFEAL+GA++L+G ++ A Q+                   
Sbjct: 980  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGTLEEAKQLFGRLLFNDPVRVKSEKFLS 1039

Query: 922  -------------FSSVLYKDNEVRFKQ------------------------WMYYPQHP 944
                         F +V   +  V F+                         W+ YP HP
Sbjct: 1040 GYFVYKVKDECKAFRAVDLDEKPVLFRNEAVMQTEGAVQAVSVGEQTDLREVWLNYPLHP 1099

Query: 945  LQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQR 1004
            LQ QEP+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT R++G+ +LTLG NQR
Sbjct: 1100 LQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQR 1159

Query: 1005 LEFLGDTVLQLITSDYLY 1022
            +EFLGD+++QL+ ++YL+
Sbjct: 1160 MEFLGDSIMQLVATEYLF 1177



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 60/97 (61%), Gaps = 1/97 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1154 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1213

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
             +    +     +  K  +A+  E+ + AL++D  ++
Sbjct: 1214 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLE 1249


>gi|410909486|ref|XP_003968221.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3-like [Takifugu
            rubripes]
          Length = 1234

 Score =  799 bits (2064), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/661 (56%), Positives = 493/661 (74%), Gaps = 7/661 (1%)

Query: 368  MMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPD 427
            + E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C   
Sbjct: 453  IAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEESVKQCRAM 512

Query: 428  TNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFN 487
             NNA KL+HYR+TVSPPTNFL ++PTVIE+D+ E++FEGFSLFSH PL  +P C+VIRFN
Sbjct: 513  NNNAGKLFHYRITVSPPTNFLTDRPTVIEYDDHEYLFEGFSLFSHTPLTNIPLCRVIRFN 572

Query: 488  IQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSA---NNKDGCPQFHIMPR 544
            I YTI +IEE  P  + V+  ELF +YLF ++LEL D +L      N+  GC QFH +PR
Sbjct: 573  IDYTIHFIEEMTPENYCVRGLELFSSYLFQDVLELYDWNLTGPEFDNDSPGCSQFHFLPR 632

Query: 545  FVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVK 604
            FVR L D GKE+L M++VL +   S  P++ E+           EWQ +A+  KGMI+  
Sbjct: 633  FVRFLPDGGKEVLSMHQVLLYLLRSSKPLVPEEEIADMLQWEELEWQKYAEECKGMIVTN 692

Query: 605  PGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLV 662
            PG KP ++R+DQLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+
Sbjct: 693  PGMKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLL 752

Query: 663  ANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIP 722
            AN PK    DK++L  +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++P
Sbjct: 753  ANSPKVKQMDKQKLMQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLP 812

Query: 723  VLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQ 782
            VL  H+R+H+ L  L+  I Y F  R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQ
Sbjct: 813  VLTHHIRYHQCLMHLDQLIGYVFTERCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQ 872

Query: 783  PEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHL 842
            P+YGDR++H    RK+GINTLINIMS+LG+   + S I HNERLEFLGDAVVEF+TS+HL
Sbjct: 873  PKYGDRKVHHMYMRKKGINTLINIMSRLGQDDPSPSRINHNERLEFLGDAVVEFLTSVHL 932

Query: 843  FHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCF 902
            +++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCF
Sbjct: 933  YYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCF 992

Query: 903  EALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHP-LQEQEPDGDRQWVEQSP 961
            EAL+GA++L+GG++ A Q+F  +L+ ++E         P+ P LQ QEP  DRQ +E SP
Sbjct: 993  EALIGAVYLEGGLEEARQLFGRLLF-NSECVAHPLTRXPRXPLLQVQEPQTDRQLIETSP 1051

Query: 962  LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 1021
            +L++L   E S GV+F H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL
Sbjct: 1052 VLQKLTQFESSIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYL 1111

Query: 1022 Y 1022
            +
Sbjct: 1112 F 1112



 Score = 63.9 bits (154), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G+++F
Sbjct: 1089 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEF 1148

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1149 AITNDKTKRPVVLRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1194


>gi|327284145|ref|XP_003226799.1| PREDICTED: ribonuclease 3-like [Anolis carolinensis]
          Length = 1323

 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/900 (46%), Positives = 576/900 (64%), Gaps = 51/900 (5%)

Query: 143  HRDDESNQRRNRSSS--RSKNNGYSHRSE--NSKSSPTRTETNLKRRRSRSKSRS-ESKS 197
            HR      RR+R  S  R +     HRS+    ++ P      L R R R + R  +S+ 
Sbjct: 244  HRSASHGDRRDRGRSPDRRRQESSRHRSDYMRGRTPPRHRSYELYRDRQRERHRHRDSRQ 303

Query: 198  RSEVPRQACARRSRSRSRILSPKRSGEALSNLDKWRMNNCSSEREMT---EKFNTLAAME 254
                 R       R+ SR  S  R         +    N + E+  T   +K    AA+E
Sbjct: 304  SPSTERSYRKDHKRTGSRSPSEDRKRPRWEEERERWSENATREKNYTSIKDKEPDEAAVE 363

Query: 255  ADQIIEEE--KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVI-QNFVS 307
              ++ +E+  K +W R   ++ Y++     +  D +   T + R + ++FE  + +    
Sbjct: 364  KSEVEDEDLLKPVWVRCTHSESYFSSDPMDQVGDSTVVGTSRLRDLYEKFEEELGKRQAK 423

Query: 308  VKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNW 367
             K ++P ++            + K+       + +   S     SS S S   D      
Sbjct: 424  AKAARPPWE----------PPKTKLDEDVGSSSDSECDSEDDSCSSSSDSEVFDV----- 468

Query: 368  MMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPD 427
            + E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH IY GE+    C P 
Sbjct: 469  IAEIKRKKAHPDRLHEELWYNDPGQMNDGPLCKCSAKARRTGIRHGIYPGEEPIKPCRPM 528

Query: 428  TNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFN 487
            TNNA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFN
Sbjct: 529  TNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFN 588

Query: 488  IQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSA---NNKDGCPQFHIMPR 544
            I YTI +IEE +P  F V+  ELF +YLF ++LEL D +L      +N+  CP+FH MPR
Sbjct: 589  IDYTIHFIEEMMPENFCVRGLELFSSYLFRDVLELYDWNLIGPPLEDNETSCPRFHFMPR 648

Query: 545  FVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVK 604
            FVR L D GKE+L M+++L +      P++ E+   +       EWQ +A+  KGMI+  
Sbjct: 649  FVRFLPDGGKEVLSMHQILLYLLRCNKPLVPEEEIANMLQWEELEWQKYAEECKGMIVTS 708

Query: 605  PGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLV 662
             G KP ++R+DQLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+
Sbjct: 709  SGMKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLL 768

Query: 663  ANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIP 722
            AN PK    DK++L  +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++P
Sbjct: 769  ANSPKVKQADKQKLVQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLP 828

Query: 723  VLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQ 782
            VL  H+R+H+ L  L+  I Y F++R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQ
Sbjct: 829  VLTHHIRYHQCLMHLDKLIGYIFKDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQ 888

Query: 783  PEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHL 842
            P+YGDR++H  + RK+GINTLINIMS+LG+     S I HNERLEFLGDAVVEF+TS+HL
Sbjct: 889  PKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPAPSRINHNERLEFLGDAVVEFLTSVHL 948

Query: 843  FHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCF 902
            +++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCF
Sbjct: 949  YYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCF 1008

Query: 903  EALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPL 962
            EAL+GA++L+G ++ A Q+F  +L+                  + QE + DRQ +E SP+
Sbjct: 1009 EALIGAVYLEGSLEEAKQLFGRLLFN----------------CKLQESNTDRQLIETSPV 1052

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            L++L   E + GV F H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1053 LQKLTMFEDAIGVTFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1112



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 60/97 (61%), Gaps = 1/97 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G+++F
Sbjct: 1089 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEF 1148

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
             +    +     +  K  +A+  E+ + AL++D  ++
Sbjct: 1149 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLE 1184


>gi|119631172|gb|EAX10767.1| ribonuclease III, nuclear, isoform CRA_a [Homo sapiens]
 gi|119631173|gb|EAX10768.1| ribonuclease III, nuclear, isoform CRA_a [Homo sapiens]
          Length = 1349

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/808 (48%), Positives = 543/808 (67%), Gaps = 54/808 (6%)

Query: 230  DKWRMNNCSSEREMTEKFNTLAAMEADQIIEEE---------KKIWTRSAPADLYYTK-- 278
            D+W  N  S +    + + ++   E ++ + ++         K +W R   ++ YY+   
Sbjct: 370  DRWSDNQSSGK---DKNYTSIKEKEPEETMPDKNEEEEEELLKPVWIRCTHSENYYSSDP 426

Query: 279  --RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKC 336
              +  D +   T + R + D+FE              +      + K  R   +  K K 
Sbjct: 427  MDQVGDSTVVGTSRLRDLYDKFEE-------------ELGSRQEKAKAARPPWEPPKTKL 473

Query: 337  SHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDG 396
                 + + S        + S   D+E  + + E++ K+ HPDRLH ELW+ND G+MNDG
Sbjct: 474  DEDLESSSESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDG 533

Query: 397  PLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIE 456
            PLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR+TVSPPTNFL ++PTVIE
Sbjct: 534  PLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIE 593

Query: 457  HDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLF 516
            +D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE +P  F VK  ELF  +LF
Sbjct: 594  YDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLF 653

Query: 517  HEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISE 576
             +ILEL D +LK                      D GKE+L M+++L +       ++ E
Sbjct: 654  RDILELYDWNLK----------------------DGGKEVLSMHQILLYLLRCSKALVPE 691

Query: 577  KLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDAVHFG 634
            +   +       EWQ +A+  KGMI+  PG+KP ++R+DQLDRE    D+  +P  VHFG
Sbjct: 692  EEIANMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIVHFG 751

Query: 635  SRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKR 694
             RP QL +AG P +QKLWK YVKLRHL+AN PK    DK++LA +E+ LQ++R  + M+R
Sbjct: 752  IRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNTMRR 811

Query: 695  GVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLA 754
             VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ L  L+  I Y FQ+R LLQLA
Sbjct: 812  EVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLA 871

Query: 755  LTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKV 814
            +THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  + RK+GINTLINIMS+LG+  
Sbjct: 872  MTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQDD 931

Query: 815  ATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI 874
             T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++
Sbjct: 932  PTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKL 991

Query: 875  GLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRF 934
             L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G ++ A Q+F  +L+ D ++R 
Sbjct: 992  ELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR- 1050

Query: 935  KQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGY 994
            + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT R++G+
Sbjct: 1051 EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGF 1110

Query: 995  TNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
             +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1111 NHLTLGHNQRMEFLGDSIMQLVATEYLF 1138



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1115 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1174

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1175 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1220


>gi|119631174|gb|EAX10769.1| ribonuclease III, nuclear, isoform CRA_b [Homo sapiens]
          Length = 1120

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/901 (45%), Positives = 572/901 (63%), Gaps = 80/901 (8%)

Query: 140  RSMHRDDESNQRRNRSSSRSKNNGYSHRSENSKS---SPTRTETNLKRRRSRSKSRSESK 196
            R  H DD      +R    S   G  HRS + +    SP R   + + R    + R+ S+
Sbjct: 71   RLKHYDD------HRHRDHSHGRGERHRSLDRRERGRSPDRRRQDSRYRSDYDRGRTPSR 124

Query: 197  SRSEVPRQACARRSRSRSRILSPKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEAD 256
             RS        R SRS SR    K+        D+W  N  S +    + + ++   E +
Sbjct: 125  HRS------YERSSRSPSR---EKKRARWEEEKDRWSDNQSSGK---DKNYTSIKEKEPE 172

Query: 257  QIIEEE---------KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQ 303
            + + ++         K +W R   ++ YY+     +  D +   T + R + D+FE    
Sbjct: 173  ETMPDKNEEEEEELLKPVWIRCTHSENYYSSDPMDQVGDSTVVGTSRLRDLYDKFEE--- 229

Query: 304  NFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAE 363
                      +      + K  R   +  K K      + + S        + S   D+E
Sbjct: 230  ----------ELGSRQEKAKAARPPWEPPKTKLDEDLESSSESECESDEDSTCSSSSDSE 279

Query: 364  EDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAF 423
              + + E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    
Sbjct: 280  VFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKP 339

Query: 424  CNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKV 483
            C P TNNA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKV
Sbjct: 340  CRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKV 399

Query: 484  IRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMP 543
            IRFNI YTI +IEE +P  F VK  ELF  +LF +ILEL D +LK               
Sbjct: 400  IRFNIDYTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLK--------------- 444

Query: 544  RFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIV 603
                   D GKE+L M+++L +       ++ E+   +       EWQ +A+  KGMI+ 
Sbjct: 445  -------DGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVT 497

Query: 604  KPGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHL 661
             PG+KP ++R+DQLDRE    D+  +P  VHFG RP Q        +QKLWK YVKLRHL
Sbjct: 498  NPGTKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQ--------YQKLWKSYVKLRHL 549

Query: 662  VANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLI 721
            +AN PK    DK++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++
Sbjct: 550  LANSPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMML 609

Query: 722  PVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVR 781
            PVL  H+R+H+ L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+R
Sbjct: 610  PVLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIR 669

Query: 782  QPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIH 841
            QP+YGDR++H  + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+H
Sbjct: 670  QPKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVH 729

Query: 842  LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 901
            L+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANC
Sbjct: 730  LYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANC 789

Query: 902  FEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSP 961
            FEAL+GA++L+G ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP
Sbjct: 790  FEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSP 848

Query: 962  LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 1021
            +L++L   E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL
Sbjct: 849  VLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYL 908

Query: 1022 Y 1022
            +
Sbjct: 909  F 909



 Score = 63.9 bits (154), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 886 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 945

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 946 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 991


>gi|395840340|ref|XP_003793018.1| PREDICTED: ribonuclease 3 [Otolemur garnettii]
          Length = 1345

 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/769 (49%), Positives = 517/769 (67%), Gaps = 52/769 (6%)

Query: 263  KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYT 318
            K +W R   ++ YY+     +  D +   T + R + D+FE              +    
Sbjct: 409  KPVWIRCTHSENYYSSDPMDQVGDSTVVGTSRLRDLYDKFEE-------------ELGSR 455

Query: 319  ANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHP 378
              + K  R   +  K K      + + S        + S   D+E  + + E++ K+ HP
Sbjct: 456  QEKAKAARPPWEPPKTKLDEDLESSSESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHP 515

Query: 379  DRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYR 438
            DRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR
Sbjct: 516  DRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYR 575

Query: 439  VTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEK 498
            +TVSPPTNFLI                             P CKVIRFNI YTI +IEE 
Sbjct: 576  ITVSPPTNFLI-----------------------------PLCKVIRFNIDYTIHFIEEM 606

Query: 499  VPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKE 555
            +P  F VK  ELF  +LF +ILEL D +LK    +D    CP+FH MPRFVR L D GKE
Sbjct: 607  MPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKE 666

Query: 556  LLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVD 615
            +L M+++L +       ++ E+   +       EWQ +A+  KGMI+  PG+KP ++R+D
Sbjct: 667  VLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRID 726

Query: 616  QLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDK 673
            QLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK
Sbjct: 727  QLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDK 786

Query: 674  RRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRS 733
            ++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ 
Sbjct: 787  QKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQC 846

Query: 734  LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
            L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  
Sbjct: 847  LMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHM 906

Query: 794  NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
            + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGG
Sbjct: 907  HMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGG 966

Query: 854  LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
            LATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G
Sbjct: 967  LATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEG 1026

Query: 914  GIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSS 973
             ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + 
Sbjct: 1027 SLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAI 1085

Query: 974  GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1086 GVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1134



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 1111 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1170

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1171 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1216


>gi|432930273|ref|XP_004081406.1| PREDICTED: ribonuclease 3-like [Oryzias latipes]
          Length = 1306

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/660 (54%), Positives = 476/660 (72%), Gaps = 33/660 (5%)

Query: 368  MMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPD 427
            + E++ K+ HPDRLH ELW+ND G+    P+                         C P 
Sbjct: 448  IAEIKRKKAHPDRLHEELWYNDPGQ----PV-----------------------KPCRPM 480

Query: 428  TNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFN 487
             NNA KL+HYR+TVSPPTNFL ++PTVIE+D+ E++FEGFSLFSH PL  +P C+VIRFN
Sbjct: 481  NNNAGKLFHYRITVSPPTNFLTDRPTVIEYDDHEYLFEGFSLFSHTPLTSIPLCRVIRFN 540

Query: 488  IQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNK---DGCPQFHIMPR 544
            I YTI +IEE  P  + V+  ELF +YLF +ILEL D +LK+ +++    GC QFH MPR
Sbjct: 541  IDYTIHFIEEMAPENYCVRGLELFASYLFQDILELYDWNLKAPDSEGEASGCQQFHFMPR 600

Query: 545  FVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVK 604
            FVR L D GKE+L M++VL +   S   ++ E+           +WQ +A+  KGMI+  
Sbjct: 601  FVRFLPDGGKEVLSMHQVLLYLLCSSKALVPEEEIADMLQWEQLDWQKYAEECKGMIVTN 660

Query: 605  PGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLV 662
            PG KP ++R+DQLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+
Sbjct: 661  PGMKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLL 720

Query: 663  ANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIP 722
            AN PK    DK++L+ +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++P
Sbjct: 721  ANSPKVKKLDKQKLSQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLP 780

Query: 723  VLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQ 782
            VL  H+R+H+ L  L++ I Y F+ R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQ
Sbjct: 781  VLTHHIRYHQCLMHLDELIGYVFKERCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQ 840

Query: 783  PEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHL 842
            P+YGDR+ H    RK+GINTLINIMS+LG+   + S I HNERLEFLGDAVVEF+TS+HL
Sbjct: 841  PKYGDRKAHQMYMRKKGINTLINIMSRLGQDDPSPSRINHNERLEFLGDAVVEFLTSVHL 900

Query: 843  FHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCF 902
            +++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCF
Sbjct: 901  YYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCF 960

Query: 903  EALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPL 962
            EAL+GA++L+GG+D A  +F  +L+   ++R + W+ YP HPLQ QEP  DRQ +E SP+
Sbjct: 961  EALIGAVYLEGGLDEARLLFGRLLFNSEDLR-EVWLNYPAHPLQVQEPQTDRQLIETSPV 1019

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            L++L   E S GV F H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1020 LQKLTSFEDSIGVFFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1079



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 44/63 (69%)

Query: 819  NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
             + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G+++
Sbjct: 1055 TLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE 1114

Query: 879  FML 881
            F +
Sbjct: 1115 FAI 1117


>gi|241858001|ref|XP_002416132.1| ribonuclease III, putative [Ixodes scapularis]
 gi|215510346|gb|EEC19799.1| ribonuclease III, putative [Ixodes scapularis]
          Length = 778

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/647 (56%), Positives = 459/647 (70%), Gaps = 34/647 (5%)

Query: 393  MNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKP 452
            MNDGPLCRCS++++RSGIRH IY GE   A C+P+TNN  +L+HYR+ V+P TNF++  P
Sbjct: 1    MNDGPLCRCSARAQRSGIRHGIYPGEGPLAPCDPNTNNVGRLHHYRIAVTPRTNFMMKCP 60

Query: 453  TVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFF 512
            T I HD  EF+FEGFS+ SH  L KLPTC+VIRFNI+Y ++Y+EEK P  FTV   EL  
Sbjct: 61   TTIRHDGHEFVFEGFSMLSHWALPKLPTCRVIRFNIEYAVLYLEEKFPENFTVCGLELLS 120

Query: 513  NYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVP 572
             YLF E+LE++DLD ++  + +GCP+FH MPRF R+L+DNGKELL +  VL++  +S VP
Sbjct: 121  RYLFTEVLEMLDLDWRAHGDPEGCPRFHFMPRFARKLEDNGKELLSLNVVLQYLLTSSVP 180

Query: 573  VISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRE--SETNDIYPDA 630
            +++         +S  +WQ FAD VKGMI+V PG KPCA+RVDQLDRE       ++P+ 
Sbjct: 181  LVAAPELPRLCKMSQSKWQGFADQVKGMIVVNPGMKPCALRVDQLDRELCGTQGGVFPEI 240

Query: 631  VHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNS 690
            VHFG RP QL +AG+P +QK W+ YVK RHL+ANKPK    D+ +L  KE         +
Sbjct: 241  VHFGIRPPQLSYAGNPMYQKAWRDYVKFRHLLANKPKVLYTDRHKLLQKEA--------N 292

Query: 691  KMKRGVTVAISSRGFYRTGIMCDMVQHAML-IPVLICHLRFHRSLNVLEDRIQYKFQNRY 749
             +KR VTV +SS  F+RTGIMCD+VQ +      L+C       +      +   +    
Sbjct: 293  NLKRDVTVVVSSENFFRTGIMCDIVQWSRYPFTGLLC-----SEVRCCLLTLSLPWGTAD 347

Query: 750  LLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSK 809
            L QLALTHPSYRENFGTNPDHARNSL+NCG+RQPEYGDRRIH+ NTRKRGINTLINIMS+
Sbjct: 348  LFQLALTHPSYRENFGTNPDHARNSLTNCGIRQPEYGDRRIHYLNTRKRGINTLINIMSR 407

Query: 810  LGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAH 869
             GR+  T S+I+HNERLEFLGDAVVEF++SIHLF +FPD+EEGGLATYRAAIVQNQHLA 
Sbjct: 408  FGRQEETASSISHNERLEFLGDAVVEFLSSIHLFFMFPDLEEGGLATYRAAIVQNQHLAV 467

Query: 870  LAKRI-------GLEDFMLYAHGSDLCHEVELKHAMA-------NCFEALMGALFLDGGI 915
            LAK I        +E+  +  H S     +  +HA A       +     +GALFLD GI
Sbjct: 468  LAKVILHSKVFTHVEELPISPHIS---FSLPARHAFAIGMLEETSWLFVSLGALFLDSGI 524

Query: 916  DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGV 975
             VADQVFS+ L+ + ++    W+ YP HPLQEQ P+GDR+W++  PLLK+L   E  +G+
Sbjct: 525  RVADQVFSTTLFSEPDL-LGVWVNYPLHPLQEQVPEGDRKWIDSVPLLKKLHEFEELTGI 583

Query: 976  IFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
             F HIRLLA+ FT RS+G+ NLTLGSNQRLEFLGDTVLQL+ S+YLY
Sbjct: 584  EFTHIRLLAKAFTHRSIGFNNLTLGSNQRLEFLGDTVLQLVASEYLY 630



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 41/62 (66%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           N+RLEFLGD V++ + S +L+  FP+  EG L+  R+++V N+  A +   +G+ +F +Y
Sbjct: 610 NQRLEFLGDTVLQLVASEYLYKYFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMVEFTIY 669

Query: 883 AH 884
            +
Sbjct: 670 PY 671


>gi|260828679|ref|XP_002609290.1| hypothetical protein BRAFLDRAFT_86799 [Branchiostoma floridae]
 gi|229294646|gb|EEN65300.1| hypothetical protein BRAFLDRAFT_86799 [Branchiostoma floridae]
          Length = 1490

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/658 (54%), Positives = 460/658 (69%), Gaps = 65/658 (9%)

Query: 371  LQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNN 430
            L+ K+ HPDRLH ELW+ND GEMNDGPLCRCS KSRR+GIRHNIY GE+    C+P TNN
Sbjct: 657  LRKKKAHPDRLHEELWYNDPGEMNDGPLCRCSMKSRRTGIRHNIYPGEELIPKCDPYTNN 716

Query: 431  ADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQY 490
            A++L+HYR+T+SP TNFL ++PTVI++D+ E+IFEGFS+ SH  L+ +P CK+IRFNI+Y
Sbjct: 717  ANRLHHYRITMSPFTNFLTDRPTVIQYDDHEYIFEGFSMLSHQKLQNIPDCKLIRFNIEY 776

Query: 491  TIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDL----KSANNKDGCPQFHIMPRFV 546
            TI  IEEK+P  F V   ++F ++LF++ILELVD D     +    K GC +FH MPRFV
Sbjct: 777  TIHLIEEKMPENFCVHGLDMFSDFLFNDILELVDWDRWGPSRVDGKKKGCCRFHFMPRFV 836

Query: 547  RELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPG 606
            R L +NGKE+L M++VL++   S  P++          L  YEWQ FA+  K MI+  PG
Sbjct: 837  RNLPENGKEVLAMHQVLQYLQRSNRPLVEASELALLLQLEEYEWQRFAEQTKNMIVTHPG 896

Query: 607  SKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVAN 664
             KPC++RVDQLDRE    D+  YP  VHFG RP QL +AG P +QKLWK Y++LRHL+AN
Sbjct: 897  MKPCSVRVDQLDREQLNPDVISYPVIVHFGIRPAQLSYAGDPKYQKLWKSYLRLRHLLAN 956

Query: 665  KPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVL 724
                                     S+M+R VTV +SS GF RTGI  D+ QHA+L+PVL
Sbjct: 957  -------------------------SEMRREVTVELSSEGFVRTGIRSDVCQHALLLPVL 991

Query: 725  ICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPE 784
            + +LR+H  LN L+  +  KF++R LL+LALTHPS+  NFG NPDHARNSLSNCG+RQP+
Sbjct: 992  MHYLRYHACLNELDQLLGSKFEDRSLLELALTHPSHHLNFGMNPDHARNSLSNCGMRQPK 1051

Query: 785  YGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFH 844
            YGDRRIH  +TRK+GINTLINIMS++G    T S I HNERLEFLGDAVVEF+TS HL+ 
Sbjct: 1052 YGDRRIHHVHTRKKGINTLINIMSRMGHDEETPSLINHNERLEFLGDAVVEFLTSSHLYF 1111

Query: 845  VFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEA 904
            +FPD+EEGGLATYR AIVQNQHLA LAK++ L++FMLYAHG DLC E +L+HAMANC EA
Sbjct: 1112 MFPDLEEGGLATYRTAIVQNQHLAVLAKKLRLDEFMLYAHGPDLCRESDLRHAMANCLEA 1171

Query: 905  LMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLK 964
            L+GA+++  G++   ++F  +L+ D                                  +
Sbjct: 1172 LIGAMYMQQGLEETKKLFCRLLFSD----------------------------------E 1197

Query: 965  QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            +L   E   G+ F H+RLLAR FT R++G+ NLTLG NQRLEFLGD+V+Q+++S+YLY
Sbjct: 1198 RLTEFESRCGMEFKHVRLLARAFTHRTVGFNNLTLGHNQRLEFLGDSVMQMVSSEYLY 1255



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 73/111 (65%), Gaps = 7/111 (6%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+RLEFLGD+V++ ++S +L+  FPD  EG L+  R+++V N+  A +++ +G+E++
Sbjct: 1232 LGHNQRLEFLGDSVMQMVSSEYLYKHFPDHHEGHLSLLRSSLVNNRTQALVSQDLGMEEY 1291

Query: 880  MLYAHGSDLCHEVEL---KHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            ++    SD   + +L   +  +A+  EA MGAL++D G++    VF +V +
Sbjct: 1292 II---SSDKARQGKLSLRQKTLADLMEAFMGALYVDQGLEYV-CVFMNVCF 1338


>gi|170031452|ref|XP_001843599.1| ribonuclease 3 [Culex quinquefasciatus]
 gi|167870165|gb|EDS33548.1| ribonuclease 3 [Culex quinquefasciatus]
          Length = 835

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/642 (55%), Positives = 455/642 (70%), Gaps = 36/642 (5%)

Query: 229 LDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDSYECT 288
           L KWR N C +  ++  K   LA +  D    EEK  W RS+PADLYY +R  D   E T
Sbjct: 215 LTKWRKNYCETPEDIRRK---LAELTND----EEKNSWVRSSPADLYY-RRVSDKVVEST 266

Query: 289 QKTRTICDEFES-VIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSS 347
            +   +C  FES +I+    V+  +P +     + K+         R C H       + 
Sbjct: 267 PRQDALCSLFESELIERAQKVRSKQPPYQPPPRKHKV---------RVCRH------KND 311

Query: 348 GSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRR 407
              SS   S  E + EE+  M EL  K  HP RLH +LW+ND GEMNDGPLCRCS++SRR
Sbjct: 312 KCSSSDSESDDELNFEEECSMEELTAKIQHPYRLHVDLWYNDPGEMNDGPLCRCSARSRR 371

Query: 408 SGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGF 467
           SGIRH  Y GE     C P++NNADKLYHYR+T+SPPTNFL   PT+I+HD  EF+FEGF
Sbjct: 372 SGIRHGKYPGESGFTKCVPNSNNADKLYHYRITISPPTNFLTKTPTIIKHDQHEFLFEGF 431

Query: 468 SLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDL 527
           S+ SH P+ +LPTCKVIRFNI+YTI+YIEE++P  FT+++ +LF  ++F E+LELVD  +
Sbjct: 432 SMLSHQPIGELPTCKVIRFNIEYTILYIEEQLPENFTIRELDLFERFMFKELLELVDFTV 491

Query: 528 --KSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDL 585
               AN +D CP +H +PRFVR+L DNGKE+L M  VL +   +  P+++  + K  +D+
Sbjct: 492 FPSGANAEDSCPCYHFLPRFVRDLPDNGKEVLAMSEVLRYLLDNSGPLVAPDILKEMNDM 551

Query: 586 STYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDR-------ESETND---IYPDAVHFGS 635
           S  EWQD+ D VKGM++  PG KPC++RVDQLDR       E+ T++   I+P  VHFG 
Sbjct: 552 SQIEWQDYVDYVKGMVVTNPGMKPCSVRVDQLDRNVTDVPKETLTDEDGLIHPVIVHFGI 611

Query: 636 RPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRG 695
           RP QL +AG+P++QK W+ YVK RHL+AN  K + EDKR+L AKE RL EMRT  +MKR 
Sbjct: 612 RPPQLSYAGNPEYQKAWREYVKFRHLIANMSKPSFEDKRKLEAKENRLLEMRTQGRMKRN 671

Query: 696 VTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLAL 755
           +TVA+S++GF+RTGIMCDMVQHAM+IPVL  HLRFHR+L+ LE  I Y F NRY LQLAL
Sbjct: 672 ITVAVSAKGFHRTGIMCDMVQHAMVIPVLTGHLRFHRALDALEKYIDYTFTNRYTLQLAL 731

Query: 756 THPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVA 815
           THPSY+ENFGTNPDHARNSL+NCG+RQPEYGDR+IHF NTRKRGINTLI+IMS+ G++  
Sbjct: 732 THPSYKENFGTNPDHARNSLTNCGIRQPEYGDRKIHFMNTRKRGINTLISIMSRFGKEYE 791

Query: 816 TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATY 857
           T+SNITHNERLEFLGDAVVEFITSIHLFH+FPD+EEG +  +
Sbjct: 792 TDSNITHNERLEFLGDAVVEFITSIHLFHMFPDLEEGRMIEF 833


>gi|312384091|gb|EFR28902.1| hypothetical protein AND_02573 [Anopheles darlingi]
          Length = 1155

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/772 (48%), Positives = 499/772 (64%), Gaps = 52/772 (6%)

Query: 260  EEEKKIWTRSAPADLYYTKRTEDDSYECTQKTRTICDEFESVI-QNFVSVKESKPQFDYT 318
            +E+   W RS+PADLYY KR      E   +   +C  F+ V+ Q   +V+ ++P  +  
Sbjct: 4    DEDCTAWVRSSPADLYY-KRISASVVESKSRLNNLCQLFDKVLLQRTANVRATRPTNESP 62

Query: 319  ANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHP 378
            ++R+K K  +++             +  S  E+     S EE          L  K  +P
Sbjct: 63   SHRRKFKILDQRSS-----------SSDSSDENELKVESTEE----------LINKIRYP 101

Query: 379  DRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYR 438
             RLH ELW+ND  E+N+GPLCRCS++SR +GI H  Y GE     C  ++NNADKL+HYR
Sbjct: 102  LRLHSELWYNDPDELNNGPLCRCSARSRSTGIHHGKYHGEHGFPKCILNSNNADKLHHYR 161

Query: 439  VTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEK 498
            +T+SP TNF I  PT+IEHD+ EF+FEGFSL +H P+ +LP+CK+IR+NI+YTI+Y  E 
Sbjct: 162  ITISPSTNFFIQNPTIIEHDDHEFLFEGFSLLTHQPIGELPSCKMIRYNIEYTILYQAEP 221

Query: 499  VPNGFTVKDTELFFNYLFHEILELVDLDLKSANNK--DGCPQFHIMPRFVRELKDNGKEL 556
            +P  FT+++ +LF  YLF E+LELVD +++ +  +    CP +H +PRFVR+L DNGKE+
Sbjct: 222  MPQNFTIRELDLFERYLFRELLELVDFNVQPSGTEVNSSCPCYHFLPRFVRDLPDNGKEV 281

Query: 557  LPMYRVLEFFTSSFVP-VISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVD 615
            L M  VL +      P V+ E +A ++      EWQD+ D V GMI+  PG+KP ++RVD
Sbjct: 282  LAMSEVLRYLLDYSGPLVLPEMMAMAR----ASEWQDYVDYVNGMIVTNPGAKPHSLRVD 337

Query: 616  QLDR---ESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAED 672
            QL+    E+ T D YP  VH+  R  +LC   +P +QK+W+ Y+K RHLVA+  K T ED
Sbjct: 338  QLNLDMPETTTLDWYPTIVHYSYRSPKLCNVSNPKYQKVWQEYIKNRHLVASMVKPTMED 397

Query: 673  KRRLAAKEQRLQEMRT-NSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFH 731
              +L   E+RL +MR     +KR V + IS++ F+RTGI  D+VQHAMLIPVL  HLRFH
Sbjct: 398  LHKLETIEKRLLDMRNMQGTLKRNVKITISAKSFHRTGIRVDVVQHAMLIPVLTDHLRFH 457

Query: 732  RSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIH 791
            RSL+VLE +I Y+F NRY LQLALTH +Y  N GTNPDH RN L+NCG+           
Sbjct: 458  RSLDVLEKQIDYRFTNRYTLQLALTHRTYANNGGTNPDHVRNVLANCGILN--------- 508

Query: 792  FQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEE 851
              N RKR ++++I   S  G+K  T  N  HNERL FLGDAV+ F  S+ LFH+FP++ E
Sbjct: 509  -MNPRKRNVHSMIRPHS--GKKSETAFNRRHNERLAFLGDAVIVFSASVPLFHMFPNLGE 565

Query: 852  GGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFL 911
            GGL+ YR AIV+ QHL  LAK++ LE+F+  AHGS   +       +A+CF+ALMGAL L
Sbjct: 566  GGLSVYRGAIVEKQHLVVLAKKLHLEEFLRCAHGSAASNR-----TVADCFQALMGALLL 620

Query: 912  DGGIDVADQVFSSVLYKDNEVRFKQ-WMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLE 970
            DGGI VA +VF+S LY  +E +  + W  YP+HPLQ+QEP+ DR  +E    LK L   E
Sbjct: 621  DGGIAVASRVFASTLYGPDEPKLHEIWTNYPRHPLQQQEPNSDRHHIEWCERLKTLTRFE 680

Query: 971  YSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
             S GV FNHIRLLAR FT RS GYT LTLG+NQRLEFLGD VL+LI ++++Y
Sbjct: 681  DSIGVKFNHIRLLARAFTDRSRGYTALTLGTNQRLEFLGDAVLKLIGTEHVY 732



 Score = 59.7 bits (143), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 58/100 (58%), Gaps = 4/100 (4%)

Query: 816 TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
           T   +  N+RLEFLGDAV++ I + H++  FP      LA +R  +V N+ LA +   +G
Sbjct: 705 TALTLGTNQRLEFLGDAVLKLIGTEHVYRHFPKHHSQHLADWRNQLVSNRTLATVCDDLG 764

Query: 876 LEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGI 915
           +     YA  S+   E+++K   A+  EA +GAL++D G+
Sbjct: 765 MAH---YAIISNPKTELKMKDR-ADLLEAFIGALYVDKGL 800


>gi|390360066|ref|XP_800324.2| PREDICTED: ribonuclease 3-like [Strongylocentrotus purpuratus]
          Length = 1683

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/893 (44%), Positives = 546/893 (61%), Gaps = 41/893 (4%)

Query: 151  RRNRSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSE---SKSRSEVPRQACA 207
            RR+ SSSR + +  S   + SKS           +RSRS SR +   S SR + PR+   
Sbjct: 378  RRHESSSRERGSHRSSSPQRSKSRRAEGHDLQDSKRSRSPSRDQRPRSPSRDQRPREREG 437

Query: 208  RRSRSRSR-----ILSPKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEE- 261
               R  SR     I  P ++ +      +W         E  E+ +       D   EE 
Sbjct: 438  SLQRHSSRKPEGQITDPSKTCQ------RWNDLERELREEELEENDEDKDPLEDSDPEEW 491

Query: 262  --EKKIWTRSAPADLYYTKRTEDD----SYECTQKTRTICDEFES-VIQNFVSVKESKPQ 314
              +   W + +P + +Y+    D     S   T+K + +   FE+ +I+    V+  +PQ
Sbjct: 492  GTDDTPWIQCSPRENFYSINPSDQISASSVAGTEKLKELLKRFEAEIIERGPRVRAKQPQ 551

Query: 315  FDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLK 374
                   KK +           S      + SS SES SD+SSGEED + D  +  L+ +
Sbjct: 552  ----PEEKKPELHWHVHSHGHHSA-----SESSDSESDSDTSSGEEDKDYDFRISCLENR 602

Query: 375  QNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKL 434
             NHP RL   LWFN  GEMNDGPLC+CS K ++SGIRHNI+ GE     C   TNNA KL
Sbjct: 603  ANHPWRLAENLWFNQPGEMNDGPLCKCSIKQKKSGIRHNIFPGEKPVPICEQHTNNASKL 662

Query: 435  YHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVY 494
            +HYRVT+SP TNFL    TVI  D +E+IFEGFSLFSHH L+++P CKV+RF  +YT+ +
Sbjct: 663  HHYRVTISPTTNFLTTTQTVIVFDKREYIFEGFSLFSHHSLDEVPECKVVRFGREYTLHF 722

Query: 495  IEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGK 554
              E +P  FTVK  +LF  +LF EILEL D D K   N  GC  FH MPRF R L +NGK
Sbjct: 723  FPEPMPEHFTVKGLDLFARFLFEEILELWDFDFKGKEN--GCHHFHFMPRFARLLPNNGK 780

Query: 555  ELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYE--WQDFADGVKGMIIVKPGSKPCAM 612
            E+L M+ V+++   S  P+I    AK  D L+  E  WQ + D ++ MI  +PG KP ++
Sbjct: 781  EILSMHHVIQYLIRSNKPIIDP--AKLDDWLAVSETAWQRYVDKLQHMIATRPGKKPSSI 838

Query: 613  RVDQLDRESETND--IYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTA 670
            R+DQLDR+    D   +P  VHFG RP QL + G P+++KL K + +LRHL+ NKP+ T 
Sbjct: 839  RIDQLDRDQMNPDKKTFPVVVHFGVRPAQLSYIGDPNYRKLLKSFTRLRHLLLNKPRVTE 898

Query: 671  EDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRF 730
             DK +LA KE +LQ +R      R VT  +SS     TG+  D+ QHA+++PVL+ HLR+
Sbjct: 899  ADKEKLAEKEAKLQRIRVQGSRVREVTAEVSSEHMLATGVGVDICQHALMLPVLVNHLRY 958

Query: 731  HRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVR-QPEYGDRR 789
               LN L   + YKFQ+  LL+ A+THPSY+  FGT PDH RNSL NCG+R + ++ + +
Sbjct: 959  FACLNSLYQVLGYKFQDPMLLRFAMTHPSYKLYFGTTPDHVRNSLYNCGIRCRQDHTEHK 1018

Query: 790  IHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDI 849
                  RK+GIN L  IMS +       S+I + ERLEFLGDAV+EFI+S HL+H+FPD+
Sbjct: 1019 KVLAKERKKGINQLYRIMSLMASNDELPSHIKNYERLEFLGDAVIEFISSTHLYHLFPDL 1078

Query: 850  EEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGAL 909
            EEGGLATYR A+VQNQHL+ LAK++ L+ +MLYAHG DLC   +L+HAMANC EA+MGA+
Sbjct: 1079 EEGGLATYRMALVQNQHLSVLAKKLELDKYMLYAHGPDLCRPYDLRHAMANCLEAVMGAI 1138

Query: 910  FLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYL 969
            +L+ G+D+  ++F  +L+++  ++   W+ +P+ PLQ   P+ DR  ++ S +L++L   
Sbjct: 1139 YLEAGLDLCRKIFGKLLFEEEYLQ-TIWLNHPKDPLQADFPETDRHLIKNSEVLQKLTVF 1197

Query: 970  EYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            E  +G+ F HIRLLAR FT R++GYTNLT+GSNQRLEFLGD+VLQL+ S YLY
Sbjct: 1198 EGDTGMRFTHIRLLARAFTQRTVGYTNLTMGSNQRLEFLGDSVLQLVVSSYLY 1250



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 98/191 (51%), Gaps = 20/191 (10%)

Query: 745  FQNRYLLQLALTHPS--YRENFGTNPDHARNSLSNCGVRQPEY---GDRRIHFQNTRKRG 799
            F+  YL  + L HP    + +F   P+  R+ + N  V Q      GD  + F       
Sbjct: 1156 FEEEYLQTIWLNHPKDPLQADF---PETDRHLIKNSEVLQKLTVFEGDTGMRF------- 1205

Query: 800  INTLINIMSK-LGRKVATESNIT--HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
              T I ++++   ++    +N+T   N+RLEFLGD+V++ + S +L+  FP+  EG L+ 
Sbjct: 1206 --THIRLLARAFTQRTVGYTNLTMGSNQRLEFLGDSVLQLVVSSYLYKHFPNHHEGHLSL 1263

Query: 857  YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
             R+++V N+  + +A+ +GL ++++                MA+  EAL+GA+++D G++
Sbjct: 1264 LRSSLVNNKTQSIIAQDLGLVEYIIEPKTRSRNENNIPMKIMADLVEALIGAMYVDHGLE 1323

Query: 917  VADQVFSSVLY 927
            V     S V Y
Sbjct: 1324 VVSTFCSVVFY 1334


>gi|198414531|ref|XP_002121902.1| PREDICTED: similar to ribonuclease III, nuclear, partial [Ciona
            intestinalis]
          Length = 1224

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/694 (49%), Positives = 459/694 (66%), Gaps = 25/694 (3%)

Query: 350  ESSSDSSSGEEDAEEDN---WMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSR 406
            ES  D  +  E  E D+    M  ++  + H DRLH ELW+N+ G+ NDGPLCRCSS SR
Sbjct: 330  ESGVDLDTEHEGNEVDHAGELMSSIRKLKAHKDRLHEELWYNEPGQANDGPLCRCSSGSR 389

Query: 407  RSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEG 466
              GIRHNIY GE   A  +P  NN  K++HYR+TV P  N++I++PT IE+   +++FEG
Sbjct: 390  DKGIRHNIYPGEVPTAPYDPMKNNIGKMHHYRITVGPAVNYMISQPTTIEYSGHDYMFEG 449

Query: 467  FSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLD 526
            FS+FS  PL+K+P C +IRF+I+YTI  IEE  P  F ++  +LF  YLF E+LEL D  
Sbjct: 450  FSIFSDEPLDKIPLCDIIRFHIRYTIYLIEETPPESFCIRGLDLFDEYLFREVLELYDWQ 509

Query: 527  LKS------ANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAK 580
              +      A NK    +F   PRFVR L DNGKE+L + +VLE+   S  P++ EK   
Sbjct: 510  GDTPPSEALAKNKR---KFRFFPRFVRSLPDNGKEILSLCKVLEYLLDSDKPLVDEKDLD 566

Query: 581  SKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDR------ESET------NDIYP 628
                 S  EW D  D ++G I+  PG +P ++RVDQLDR      ES T      ++ YP
Sbjct: 567  WLMKCSHDEWLDHTDAIRGSIVTHPGKRPSSLRVDQLDRYDRKPVESTTQHCPQVDERYP 626

Query: 629  DAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRT 688
              +HFG RP  L +AG P +Q++W+ Y+K RHL+AN PK    DK++L  +E  LQ+++ 
Sbjct: 627  MIIHFGIRPANLSYAGDPTYQRIWRAYLKQRHLMANSPKVKQSDKKKLRERENALQKIKR 686

Query: 689  NSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNR 748
               M+R VTV +SS GF RTG+  D+ QHAML+PVL  HLR+H  L  LE +I Y+F+ R
Sbjct: 687  AKDMQREVTVELSSHGFRRTGLRSDVCQHAMLLPVLSHHLRYHLCLRTLEKKIGYEFKER 746

Query: 749  YLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMS 808
              L  A+ HPS + NFG NPDH RN+LSNCG+R P YGD  IH++ TRKRGI TLI IM+
Sbjct: 747  KWLSHAMNHPSCQMNFGLNPDHVRNTLSNCGLRLPRYGDSSIHYKYTRKRGITTLIRIMA 806

Query: 809  KLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLA 868
            +LG++    S I HNERLEFLGDAVV + TS+HLF +FPD+ EG L T+R  +V NQHLA
Sbjct: 807  RLGQQRPVLSPIEHNERLEFLGDAVVGYFTSVHLFLLFPDLSEGALTTFRTVLVNNQHLA 866

Query: 869  HLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 928
             LA+R+ L++FMLYAHG DLC + +L+HAMANCFEALMGA++++ G++ A ++F   L+ 
Sbjct: 867  LLAERLQLDEFMLYAHGPDLCRKADLRHAMANCFEALMGAIYMEAGLERAQRLFGEFLW- 925

Query: 929  DNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFT 988
            + E   + W   P H LQE+EP  DR+ ++  P+L++L   E S GV FNHIRLLA+ FT
Sbjct: 926  ETEALQRVWRSLPLHQLQEEEPVSDRRCIKDVPILQKLTKFEDSIGVKFNHIRLLAKAFT 985

Query: 989  TRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
             R++    LT G NQRLEFLGD+V  L+ S YL+
Sbjct: 986  WRNVHENILTHGHNQRLEFLGDSVCNLVASAYLF 1019



 Score = 66.2 bits (160), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 2/96 (2%)

Query: 822  HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
            HN+RLEFLGD+V   + S +LF ++P   EG L   RA +V  +  + +A  +G+ ++++
Sbjct: 998  HNQRLEFLGDSVCNLVASAYLFKLYPTHHEGHLTLLRATVVNGRTQSLVATELGMPEYVI 1057

Query: 882  YAHGSDLCHEVE--LKHAMANCFEALMGALFLDGGI 915
                +D    V    +  +A+  EA + ALF+D G+
Sbjct: 1058 CTLDNDSTERVPEWREKNLADLLEAFVAALFIDKGL 1093


>gi|47225094|emb|CAF98721.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1041

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/549 (58%), Positives = 410/549 (74%), Gaps = 5/549 (0%)

Query: 368  MMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPD 427
            + E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE     C   
Sbjct: 462  IAEIKRKKAHPDRLHEELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEQSVKQCRAM 521

Query: 428  TNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFN 487
             NNA KL+HYR+TVSPPTNFL ++PTVIE+D+ E++FEGFSLFSH PL  +P C+VIRFN
Sbjct: 522  NNNAGKLFHYRITVSPPTNFLTDRPTVIEYDDHEYLFEGFSLFSHTPLTNIPLCRVIRFN 581

Query: 488  IQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSAN---NKDGCPQFHIMPR 544
            I YTI +IEE  P  + V+  ELF +YLF +ILEL D +L   +   +  GCPQFH MPR
Sbjct: 582  IDYTIHFIEEMTPENYCVRGLELFSSYLFQDILELYDWNLTGPDFDSDSPGCPQFHFMPR 641

Query: 545  FVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVK 604
            FVR L D GKE+L M++VL +   S  P++ E+           EWQ +A+  KGMI+  
Sbjct: 642  FVRFLPDGGKEVLSMHQVLLYLLRSSKPLVPEEEIADMLQWEELEWQKYAEECKGMIVTN 701

Query: 605  PGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLV 662
            PG KP ++R+DQLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+
Sbjct: 702  PGMKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLL 761

Query: 663  ANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIP 722
            AN PK    DK++L  +E+ LQ++R  + M+R VTV +SS+GF+++GI  D+ QHAM++P
Sbjct: 762  ANSPKVKQIDKQKLMQREEALQKIRQKNTMRREVTVELSSQGFWKSGIRSDVCQHAMMLP 821

Query: 723  VLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQ 782
            VL  H+R+H+ L  L+  I Y F  R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQ
Sbjct: 822  VLTHHIRYHQCLMHLDQLIGYVFTERCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQ 881

Query: 783  PEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHL 842
            P+YGDR++H    RK+GINTLINIMS+LG+   + S I HNERLEFLGDAVVEF+TS+HL
Sbjct: 882  PKYGDRKVHHMYMRKKGINTLINIMSRLGQDDPSPSRINHNERLEFLGDAVVEFLTSVHL 941

Query: 843  FHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCF 902
            +++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCF
Sbjct: 942  YYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCF 1001

Query: 903  EALMGALFL 911
            EAL+G   +
Sbjct: 1002 EALIGETLM 1010


>gi|33585614|gb|AAH55696.1| Rnasen protein, partial [Mus musculus]
          Length = 780

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/570 (56%), Positives = 429/570 (75%), Gaps = 6/570 (1%)

Query: 458  DNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFH 517
            D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE +P  F VK  ELF  +LF 
Sbjct: 1    DDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLFR 60

Query: 518  EILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVI 574
            +ILEL D +LK    +D    CP+FH MPRFVR L D GKE+L M+++L +       ++
Sbjct: 61   DILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKALV 120

Query: 575  SEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDAVH 632
             E+   +       EWQ +A+  KGMI+  PG+KP ++R+DQLDRE    ++  +P  VH
Sbjct: 121  PEEEIANMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPEVITFPIIVH 180

Query: 633  FGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKM 692
            FG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK++LA +E+ LQ++R  + M
Sbjct: 181  FGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNTM 240

Query: 693  KRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQ 752
            +R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ L  L+  I Y FQ+R LLQ
Sbjct: 241  RREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLLQ 300

Query: 753  LALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGR 812
            LA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  + RK+GINTLINIMS+LG+
Sbjct: 301  LAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQ 360

Query: 813  KVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAK 872
               T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK
Sbjct: 361  DDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAK 420

Query: 873  RIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV 932
            ++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G ++ A Q+F  +L+ D ++
Sbjct: 421  KLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDL 480

Query: 933  RFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSM 992
            R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT R++
Sbjct: 481  R-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTV 539

Query: 993  GYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 540  GFNHLTLGHNQRMEFLGDSIMQLVATEYLF 569



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G+++
Sbjct: 545 TLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE 604

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
           + +    +     +  K  +A+  E+ + AL++D  ++
Sbjct: 605 YAITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLE 641


>gi|7022183|dbj|BAA91511.1| unnamed protein product [Homo sapiens]
          Length = 769

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/559 (56%), Positives = 419/559 (74%), Gaps = 6/559 (1%)

Query: 469  LFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLK 528
            +F+H PL  +P CKVIRFNI YTI +IEE +P  F VK  ELF  +LF +ILEL D +LK
Sbjct: 1    MFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLK 60

Query: 529  SANNKDG---CPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDL 585
                +D    CP+FH MPRFVR L D GKE+L M+++L +       ++ E+   +    
Sbjct: 61   GPLFEDSPPCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQW 120

Query: 586  STYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFA 643
               EWQ +A+  KGMI+  PG+KP ++R+DQLDRE    D+  +P  VHFG RP QL +A
Sbjct: 121  EELEWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYA 180

Query: 644  GSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSR 703
            G P +QKLWK YVKLRHL+AN PK    DK++LA +E+ LQ++R  + M+R VTV +SS+
Sbjct: 181  GDPQYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQ 240

Query: 704  GFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYREN 763
            GF++TGI  D+ QHAM++PVL  H+R+H+ L  L+  I Y FQ+R LLQLA+THPS+  N
Sbjct: 241  GFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLN 300

Query: 764  FGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHN 823
            FG NPDHARNSLSNCG+RQP+YGDR++H  + RK+GINTLINIMS+LG+   T S I HN
Sbjct: 301  FGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHN 360

Query: 824  ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
            ERLEFLGDAVVEF+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYA
Sbjct: 361  ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYA 420

Query: 884  HGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQH 943
            HG DLC E +L+HAMANCFEAL+GA++L+G ++ A Q+F  +L+ D ++R + W+ YP H
Sbjct: 421  HGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLH 479

Query: 944  PLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQ 1003
            PLQ QEP+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT R++G+ +LTLG NQ
Sbjct: 480  PLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQ 539

Query: 1004 RLEFLGDTVLQLITSDYLY 1022
            R+EFLGD+++QL+ ++YL+
Sbjct: 540  RMEFLGDSIMQLVATEYLF 558



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G+++
Sbjct: 534 TLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE 593

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
           + +    +     +  K  +A+  E+ + AL++D  ++
Sbjct: 594 YAITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLE 630


>gi|324501501|gb|ADY40667.1| Ribonuclease 3 DROSHA [Ascaris suum]
 gi|333440974|gb|AEF32762.1| DROSHA [Ascaris suum]
          Length = 1304

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/778 (43%), Positives = 495/778 (63%), Gaps = 23/778 (2%)

Query: 266  WTRSAPADLYYTKRTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFD------YTA 319
            W+++  A  YY + ++ + Y   +  R      E +I      K  +P+ D      +  
Sbjct: 280  WSQTLAAGRYYARNSKGEQYATKELLRLQKRFAEEIIDGIAKQKAEQPKLDPPDIPTFHD 339

Query: 320  NRK--KIKRTNRKKIKRKCSHCASNPTVS-SGSESSSDSSSGEEDAEEDNWMM--ELQLK 374
            N K      T+ +    K S       +S S SE  + + +G  ++++ N +   E   K
Sbjct: 340  NCKCGHQSDTDSEDEDTKESEGEDEGELSDSSSEGENVNFAGMSESKKHNTVARKEANRK 399

Query: 375  QNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKL 434
            +NHP  LHP+L FN+  +MNDGP CRCS  ++RSG+RHN +AGE     C+P  +N  +L
Sbjct: 400  RNHPAILHPDLCFNEVAQMNDGPECRCSWAAKRSGVRHNKFAGETVIELCDPSLSNLHRL 459

Query: 435  YHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKL-PTCKVIRFNIQYTIV 493
            +HY ++V P       + T I  D + +  EGFS+F H PL  + P   + R+  +Y I 
Sbjct: 460  HHYFLSVEPNPKATARRCTSITFDGKLYELEGFSVFFHRPLPTVFPQNPISRWTSEYNIK 519

Query: 494  YIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNG 553
            ++ E  P  FT++D ELF  YLF  I+E+ DL  ++    +GCP +H +PRF R L +NG
Sbjct: 520  FVSENPPENFTIQDLELFHKYLFDHIMEMYDLKRRAFEVTEGCPFYHCLPRFTRSLPENG 579

Query: 554  KELLPMYRVLEFFTSSFVPVISEKLAK-SKDDLSTYEWQDFADGVKGMIIVKPGSKPCAM 612
            KELLPM  VL +   S+ PV + + A   +DD  +  +++FA+  +G +++    +P  +
Sbjct: 580  KELLPMSAVLLYLLESYKPVTTPQEASFIRDD--SLAFREFAEKTRGTLVINADRRPSTI 637

Query: 613  RVDQLDRESETND----IYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKR 668
            R D +DR     D    +YP   HFG RP    +  +P++QK+ K Y+++R ++A K + 
Sbjct: 638  RADLIDRPDFLPDNPDPLYPLITHFGLRPSSHTYNSNPEYQKVSKEYMRMRKMMALKVRV 697

Query: 669  TAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHL 728
            TAE++ +LA K   L+ +R++S++KR   ++ISSRGFY+TG+  D+V HAML+ +   H+
Sbjct: 698  TAEERTKLAQKAAELRALRSDSQLKRDFVISISSRGFYQTGLYPDIVHHAMLLILACSHV 757

Query: 729  RFHRSLNVLED-RIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPE--Y 785
            RFH SL V E+ RI Y F+NR LL+LALTHPSYR N+GTNPDHARN+L+NCGVR  +   
Sbjct: 758  RFHWSLQVYEEERIHYIFKNRSLLELALTHPSYRTNYGTNPDHARNTLNNCGVRSAKQRA 817

Query: 786  GDRRIHFQ-NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFH 844
             D+ +  Q + +KRG +TL+ IMSKLG K   +S + HNERLEFLGDAV+EFIT+IHLF 
Sbjct: 818  QDKMVQQQLSAKKRGFHTLMEIMSKLGSKKVEQSPLNHNERLEFLGDAVIEFITTIHLFF 877

Query: 845  VFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEA 904
            +F +++EGGLATYR+ +VQN++LA LAK+IGL++FMLYAHG DLCHE +L+HAMAN FEA
Sbjct: 878  MFTELDEGGLATYRSTMVQNKNLAVLAKKIGLDEFMLYAHGPDLCHESDLRHAMANAFEA 937

Query: 905  LMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLK 964
            +M A++LD GID  D++F + ++  NE     W    +HPL+   P GDR  +++ P L+
Sbjct: 938  MMAAIYLDAGIDECDRIFGNAMFGGNEELLGAWFELEEHPLKRDNPYGDRHLIKEVPALQ 997

Query: 965  QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
             L   E S GV F HIR+LA+ FT R++G+ NLTLG NQRLEFLGDTVLQLIT+DYLY
Sbjct: 998  LLTEFEKSIGVTFKHIRVLAKAFTRRNVGFNNLTLGHNQRLEFLGDTVLQLITTDYLY 1055



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 5/128 (3%)

Query: 804  INIMSK-LGRKVATESNIT--HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAA 860
            I +++K   R+    +N+T  HN+RLEFLGD V++ IT+ +L+  FP   EG L+  R  
Sbjct: 1013 IRVLAKAFTRRNVGFNNLTLGHNQRLEFLGDTVLQLITTDYLYKHFPMHHEGHLSILRTC 1072

Query: 861  IVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVAD 919
            +V N+  + +   +G+  +++            L+    A+  E+ +GAL++D G+    
Sbjct: 1073 LVSNKTQSVICDDVGMTKYLVMPKAMQKNGAPVLRVKDKADLVESFLGALYVDRGLGYC- 1131

Query: 920  QVFSSVLY 927
            +VF  V +
Sbjct: 1132 KVFCRVCF 1139


>gi|339237827|ref|XP_003380468.1| putative RNase3 domain protein [Trichinella spiralis]
 gi|316976669|gb|EFV59916.1| putative RNase3 domain protein [Trichinella spiralis]
          Length = 1460

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/763 (42%), Positives = 490/763 (64%), Gaps = 29/763 (3%)

Query: 281  EDDSYECTQKTRTICDEFES-VIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHC 339
            + D    TQK   +  EF+  V+Q F S K+       T  + +    ++  +K +CS  
Sbjct: 86   QSDVKVATQKLTALHCEFDQHVVQLFRSAKQ-------TWQKDENDGASQSPVKLQCSAE 138

Query: 340  ASNPTVSSGSESSSDSSSGEEDAEEDNW-----------MMELQLKQNHPDRLHPELWFN 388
            +      +  E     +        +N+           + EL+ K+ HP RLHP++W+N
Sbjct: 139  SDEQDEENACEGGKQPNGNLNGDSHNNYDVNDNGRFKDALKELERKRRHPARLHPDIWYN 198

Query: 389  DKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTN-F 447
            D G++NDGP CRC  ++R+ GI H  Y GE     C+P +NNA++L++YRV + P  N F
Sbjct: 199  DAGQLNDGPSCRCCWRARQKGISHGRYPGEARVEPCDPLSNNANRLHYYRVVIKPQANLF 258

Query: 448  LINKPTVIEHDNQEFIFEGFSLFSHHPLEK-LPTCKVIRFNIQYTIVYIEEKVPNGFTVK 506
                 T IE+ ++ + F+GF + SH  +++ +P C++ R+NI Y +  +EE VP+ F+V+
Sbjct: 259  QKFSITEIEYKDKVYSFDGFGILSHELIDRNMPLCRLNRWNIDYEVSLVEEVVPDFFSVR 318

Query: 507  DTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNG---KELLPMYRVL 563
            D +LF+ Y+F E+LEL D+ L +AN +DGCP FHI PRFV + K+     +++LPM  VL
Sbjct: 319  DLDLFWEYVFVELLELYDVKLFAANVEDGCPIFHIYPRFVCKRKEKTGCTQQMLPMSVVL 378

Query: 564  EFFTSSFVPVISEKLAKSKD--DLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRES 621
            E    +   +I ++ A+  D  D        F++ +KG ++  P  +P A+R+DQLDR  
Sbjct: 379  EHLLQN-CRLIFDQPAERGDFNDRVNKHLDKFSEKLKGQVVANPWKRPVALRLDQLDRMQ 437

Query: 622  ETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQ 681
            +  D Y   VHFG  P    +AG+P++Q+ WK + K R +V  +     ED+ +LA  E 
Sbjct: 438  KAPDGYSVIVHFGRHPTVTTYAGTPEYQRAWKRFAKFRRVVMLQSYPRTEDRAKLAKMEA 497

Query: 682  RLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRI 741
             L E++  + +KR + + +S +GF +TGI  D+VQH +++ VL+ H+RFHR L V + RI
Sbjct: 498  HLTELKAKNSVKRDLIMEVSCQGFMQTGIWSDVVQHCLILLVLLNHIRFHRCLRVFQQRI 557

Query: 742  QYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGIN 801
             Y F+   LL+LA THPSYR + GTN DH RN L+NCG+RQ E+G +R +  N+RKRG++
Sbjct: 558  DYSFRKPSLLELAFTHPSYRADSGTNADHVRNVLNNCGLRQLEFGSKRTNPWNSRKRGVS 617

Query: 802  TLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAI 861
             L+N+MS++G K +  S+  +NERLE+LGDAV+EF+T+IHLF++FPD+EEG LA YR  +
Sbjct: 618  CLVNVMSRMGEKKSRASSTVNNERLEYLGDAVIEFLTTIHLFYIFPDLEEGALAPYRTLM 677

Query: 862  VQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
            VQN HL+ LA ++GL++FML+AHG DLC E +++HAMAN FEA++GA++LDGG+ VAD+V
Sbjct: 678  VQNSHLSKLAAKMGLDEFMLFAHGPDLCFEEDMRHAMANAFEAILGAVYLDGGVHVADRV 737

Query: 922  FSSVLYKDNEVRFKQWMYY--PQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNH 979
            F   L+  +  +   W+++  P+HPLQ++ PDGDR  + Q P L++L   E   GV FNH
Sbjct: 738  FGRFLFPPDWNQALHWVWFHPPRHPLQQEYPDGDRHLIHQCPTLQKLTEFEQRIGVRFNH 797

Query: 980  IRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            IRLLAR FT + +GY  LTLG NQRLEFLGD+VLQL+T++YLY
Sbjct: 798  IRLLARAFTRKCVGYNFLTLGHNQRLEFLGDSVLQLVTTEYLY 840



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 63/99 (63%), Gaps = 3/99 (3%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HN+RLEFLGD+V++ +T+ +L+  FPD +EG L+  R+++V N+  A +   + + +F
Sbjct: 817 LGHNQRLEFLGDSVLQLVTTEYLYKHFPDHQEGHLSLLRSSLVNNRTQAVICDDLEIPNF 876

Query: 880 MLY--AHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
           +L   A   +   E+ +K   A+  EA +GALF+D  +D
Sbjct: 877 ILQPPAFLRNEPQELRMKDK-ADLVEAFLGALFVDHSLD 914


>gi|156359582|ref|XP_001624846.1| predicted protein [Nematostella vectensis]
 gi|156211649|gb|EDO32746.1| predicted protein [Nematostella vectensis]
          Length = 917

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/659 (48%), Positives = 437/659 (66%), Gaps = 17/659 (2%)

Query: 374  KQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADK 433
            K N P RLH +LWFN+KGE N+GP+CRCS K + +GIRH +Y GE E   C+   NN+  
Sbjct: 83   KLNDPRRLHKDLWFNEKGETNEGPVCRCSVKEKMTGIRHAVYPGEMEIPRCDLLGNNSSN 142

Query: 434  LYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIV 493
            L+HY VTV+P  NF+ ++PT+I+H  +EF+FEGFSL SHH L K+P C +IR+NI+Y I 
Sbjct: 143  LHHYWVTVTPHANFMTDRPTIIQHKGREFVFEGFSLLSHHRLNKVPPCSLIRYNIEYEIH 202

Query: 494  YIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLK---SANNKDGCPQFHIMPRFVRELK 550
            +IE  VP  F +K  +LF ++LF ++LEL D  LK   S N+ + CP+FH +PRFV    
Sbjct: 203  FIEHPVPKNFCIKGLDLFSDFLFDKVLELHDWALKGVFSVNSDNQCPRFHFLPRFVFRRS 262

Query: 551  DNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPC 610
                ELL M +VL     S+ P+I  + ++      T +W   +   +  I+ +P  KP 
Sbjct: 263  GKVDELLSMDKVLAHLMDSYKPLIQVRTSRQ----YTPDWGKLSKSCRNQIVTRPCMKPA 318

Query: 611  AMRVDQLD-------RESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVA 663
            A RVD ++       R S     YP  +H G RP+Q+ + G+P +QKLWK YVKLR+ +A
Sbjct: 319  AFRVDDIEFSSADDTRTSGVRTRYPYIIHHGIRPVQMSYVGNPKYQKLWKSYVKLRNTLA 378

Query: 664  NKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPV 723
            N     +  K   +   +   E      M+R     ++S+G   TGI  D+ QHAML+PV
Sbjct: 379  NSSTSASVKKVSSSPLPRSKSE--NKDSMRRDFRARLNSQGVMATGIHSDVCQHAMLLPV 436

Query: 724  LICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQP 783
            L+ H+R+H  L  L+ ++ Y F++R LLQLAL+HPSY  N+G NPDHARNSLSNCGV+QP
Sbjct: 437  LVHHIRYHTCLRTLDAKLGYTFKDRMLLQLALSHPSYHLNYGMNPDHARNSLSNCGVKQP 496

Query: 784  EYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLF 843
             YGDRRIH  +++K+GI  L+ +M+ LG+     S I HNERLEFLGDAV+E I S HLF
Sbjct: 497  RYGDRRIHNVHSKKKGITHLVRVMANLGKVEEDRSMIRHNERLEFLGDAVLELICSKHLF 556

Query: 844  HVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFE 903
             + PD++EG LAT+R+A+VQN+HLA LAK + L D+M ++HG DLC E +L HAMANC E
Sbjct: 557  FMLPDMDEGHLATFRSALVQNRHLALLAKMLDLSDYMQFSHGPDLCQEDDLNHAMANCLE 616

Query: 904  ALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLL 963
            AL+GA++L+ G+ VA ++FS + + + ++ + +WM  P+H LQ+QEP GDR  +  SP+L
Sbjct: 617  ALLGAVYLEAGLQVATELFSRLAFTEQDL-YDKWMELPKHRLQDQEPGGDRHLIGSSPVL 675

Query: 964  KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            ++L   E  SG+ F HIRLLAR FT   +G  NLTLG NQRLEFLGD+VLQ + S +LY
Sbjct: 676  QKLVEFEEGSGIPFTHIRLLARAFTHPQVGKNNLTLGDNQRLEFLGDSVLQFVVSVFLY 734



 Score = 66.2 bits (160), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 64/105 (60%), Gaps = 7/105 (6%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           N+RLEFLGD+V++F+ S+ L+  FPD  EG L   R+++V ++  A +A+++ L++F+  
Sbjct: 714 NQRLEFLGDSVLQFVVSVFLYQHFPDHHEGHLTLLRSSLVNSRSQAEIARQLNLQEFI-- 771

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             G     E      +A+  EAL+ A+F+D G+    +VF  V +
Sbjct: 772 NTGPTNVRE----KMLADVLEALIAAVFVDKGLRHV-EVFCRVCF 811


>gi|402591655|gb|EJW85584.1| RNase3 domain-containing protein [Wuchereria bancrofti]
          Length = 1313

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/663 (47%), Positives = 455/663 (68%), Gaps = 12/663 (1%)

Query: 370  ELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTN 429
            E+  K+NHP  LH ++ FN+ G+MNDGP CRCS  +++SG+RHN YAGE     C+  ++
Sbjct: 397  EVIRKRNHPAILHSDVCFNEIGQMNDGPECRCSWAAKKSGLRHNKYAGETVIEKCDLSSS 456

Query: 430  NADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPL-EKLPTCKVIRFNI 488
            N+ +L+HY +   P  N ++ +PT I H  + +  EGFS+F H  L    P   + ++  
Sbjct: 457  NSHRLWHYILYTEPNPNTVVRRPTKINHRGRTYELEGFSVFFHKSLPSNFPQTPLSKWTS 516

Query: 489  QYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRE 548
            +Y I ++EE +P  FT++D ELF +YLF +I+E+ DL     +N DGCP +H MPRFV  
Sbjct: 517  EYNIKFMEENIPTNFTIEDLELFHHYLFTDIMEMYDLKKYPLDNTDGCPYYHCMPRFVCN 576

Query: 549  LKDNGKELLPMYRVLEFFTSSFVPVISEKLAKS-KDDLSTYEWQDFADGVKGMIIVKPGS 607
            L D GKE+LPM  V+ +   S+  +++E  A+  K D   +  +DFA+ V+G +++    
Sbjct: 577  LPDGGKEILPMSIVMTYLIESYHCLVTESEAQVLKQDADAF--RDFAENVRGSLVMNANK 634

Query: 608  KPCAMRVDQLDRE----SETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVA 663
            +P  +RVD +DR     + ++ ++P   HFG RP    +  + ++QK+ K Y+++R ++A
Sbjct: 635  RPSTIRVDLIDRPDFLPNNSDTLFPLITHFGVRPSSHTYNSNAEYQKMSKEYLRMRKILA 694

Query: 664  NKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPV 723
             KP+ +AE++ +LA K  +L+ +R +S++KR   +++SSR FY TG+  D+VQH +L+ +
Sbjct: 695  MKPRVSAEERGKLAQKASQLKALRNDSQLKRDFVMSVSSRNFYSTGLFPDIVQHGLLLIL 754

Query: 724  LICHLRFHRSLNVLE-DRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQ 782
               H+RF  SL V E +RI Y F+NR LL+LALTHPSYR N+GTN DHARN+L+NCGVR 
Sbjct: 755  ACAHVRFQWSLQVYEQERIHYVFKNRSLLELALTHPSYRTNYGTNSDHARNTLNNCGVRS 814

Query: 783  PE--YGDRRIHFQ-NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITS 839
             +    DR +  Q + +KRG +TL+ IMSKLG K A +S + HNERLEFLGDAV+EFIT+
Sbjct: 815  SKQRVHDRLVQQQLSAKKRGFHTLMEIMSKLGSKKAEQSPLNHNERLEFLGDAVIEFITT 874

Query: 840  IHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMA 899
            IHLF++F +++EGGLATYR+ +VQN++LA LAK+IGL++FMLYAHG DLCHE +L+HAMA
Sbjct: 875  IHLFYMFSELDEGGLATYRSTMVQNKNLALLAKKIGLDEFMLYAHGPDLCHESDLRHAMA 934

Query: 900  NCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQ 959
            N FEA+M A++LD GID  D++F   ++ D++     W     HPL+   P+GDR  +  
Sbjct: 935  NAFEAMMAAIYLDAGIDECDRIFGHAMFADSKELLSTWFDLEDHPLKRDNPNGDRHLING 994

Query: 960  SPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSD 1019
             P L+ L  LE + G+ F HIR+LA+ FT R++G+ NLTLG NQRLEFLGDTVLQLIT+D
Sbjct: 995  VPALQLLTELEKNIGITFKHIRVLAKAFTRRNIGFNNLTLGHNQRLEFLGDTVLQLITTD 1054

Query: 1020 YLY 1022
            YLY
Sbjct: 1055 YLY 1057



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 6/111 (5%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+RLEFLGD V++ IT+ +L+  FP   EG L+  R  +V N+  + +   IG+  +
Sbjct: 1034 LGHNQRLEFLGDTVLQLITTDYLYKHFPYHHEGHLSILRTCLVSNRTQSVICDDIGMTKY 1093

Query: 880  ML---YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            ++       S L   V      A+  EA +GAL++D G D   ++F  + +
Sbjct: 1094 LVTPKVMQKSGL--PVLRVKDKADLVEAFLGALYVDRGFDYC-KIFCRICF 1141


>gi|170594121|ref|XP_001901812.1| RNase3 domain containing protein [Brugia malayi]
 gi|158590756|gb|EDP29371.1| RNase3 domain containing protein [Brugia malayi]
          Length = 1329

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/663 (47%), Positives = 454/663 (68%), Gaps = 12/663 (1%)

Query: 370  ELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTN 429
            E+  K+NHP  LH ++ FN+ G+MNDGP CRCS  +++SG+RHN YAGE     C+  ++
Sbjct: 413  EVIRKRNHPAILHSDVCFNEIGQMNDGPECRCSWAAKKSGLRHNKYAGETVIEKCDLSSS 472

Query: 430  NADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPL-EKLPTCKVIRFNI 488
            N+ +L+HY +   P  N ++ + T I H  + +  EGFS+F H  L    P   + ++  
Sbjct: 473  NSHRLWHYILYTEPNPNTVVRRSTKINHRGRTYELEGFSVFFHKSLPSNFPQTPLSKWTS 532

Query: 489  QYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRE 548
            +Y I ++EE +P  FT++D ELF +YLF +I+E+ DL     +N DGCP +H MPRFV  
Sbjct: 533  EYNIKFMEENIPTNFTIEDLELFHHYLFTDIMEMYDLKKYPLDNTDGCPYYHCMPRFVYN 592

Query: 549  LKDNGKELLPMYRVLEFFTSSFVPVISEKLAKS-KDDLSTYEWQDFADGVKGMIIVKPGS 607
            L D GKE+LPM  V+ +   S+  +++E  A+  K D   +  +DFA+ V+G +++    
Sbjct: 593  LSDGGKEILPMSVVMTYLIESYHCLMTESEAQILKHDADAF--RDFAENVRGSLVMNASK 650

Query: 608  KPCAMRVDQLDRE----SETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVA 663
            +P  +RVD +DR     + ++ ++P   HFG RP    +  + ++QK+ K Y+++R ++A
Sbjct: 651  RPSTIRVDLIDRPDFLPNNSDTLFPLITHFGXRPSSHTYNSNAEYQKMSKEYLRMRKILA 710

Query: 664  NKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPV 723
             KP+ +AE++ +LA K  +L+ +R +S++KR   +++SSR FY TG+  D+VQH +L+ +
Sbjct: 711  MKPRVSAEERGKLAQKASQLKALRNDSQLKRDFVMSVSSRSFYSTGLFPDIVQHGLLLIL 770

Query: 724  LICHLRFHRSLNVLE-DRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQ 782
               H+RF  SL V E +RI Y F+NR LL+LALTHPSYR N+GTN DHARN+L+NCGVR 
Sbjct: 771  ACAHVRFQWSLQVYEQERIHYVFKNRSLLELALTHPSYRTNYGTNSDHARNTLNNCGVRS 830

Query: 783  PE--YGDRRIHFQ-NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITS 839
             +    DR +  Q + +KRG +TL+ IMSKLG K A +S + HNERLEFLGDAV+EFIT+
Sbjct: 831  SKQRVHDRLVQQQLSAKKRGFHTLMEIMSKLGSKKAEQSPLNHNERLEFLGDAVIEFITT 890

Query: 840  IHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMA 899
            IHLF++F +++EGGLATYR+ +VQN++LA LAK+IGL++FMLYAHG DLCHE +L+HAMA
Sbjct: 891  IHLFYMFSELDEGGLATYRSTMVQNKNLALLAKKIGLDEFMLYAHGPDLCHESDLRHAMA 950

Query: 900  NCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQ 959
            N FEA+M A++LD GID  D++F   ++ D++     W     HPL+   P+GDR  +  
Sbjct: 951  NAFEAMMAAIYLDAGIDECDRIFGHAMFADSKELLSTWFDLEDHPLKRDNPNGDRHLING 1010

Query: 960  SPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSD 1019
             P L+ L  LE + G+ F HIR+LA+ FT R++G+ NLTLG NQRLEFLGDTVLQLIT+D
Sbjct: 1011 VPALQLLTELEKNIGITFKHIRVLAKAFTRRNIGFNNLTLGHNQRLEFLGDTVLQLITTD 1070

Query: 1020 YLY 1022
            YLY
Sbjct: 1071 YLY 1073



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 16/116 (13%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+RLEFLGD V++ IT+ +L+  FP   EG L+  R  +V N+  + +   IG+  +
Sbjct: 1050 LGHNQRLEFLGDTVLQLITTDYLYKHFPYHHEGHLSILRTCLVSNRTQSVICDDIGMTKY 1109

Query: 880  MLYAHGSDLCHEVELKHAM--------ANCFEALMGALFLDGGIDVADQVFSSVLY 927
            ++         +V  K  M        A+  EA +GAL++D G D   +VF  + +
Sbjct: 1110 LVTP-------KVMQKSGMPVLRVKDKADLVEAFLGALYVDRGFDYC-KVFCRICF 1157


>gi|312069951|ref|XP_003137921.1| RNase3 domain-containing protein [Loa loa]
 gi|307766916|gb|EFO26150.1| RNase3 domain-containing protein [Loa loa]
          Length = 1297

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 308/663 (46%), Positives = 454/663 (68%), Gaps = 12/663 (1%)

Query: 370  ELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTN 429
            E+  K+NHP  LH ++ FN+ G+MNDGP CRCS  +++SG+RHN YAGE     C+ +++
Sbjct: 383  EVIRKRNHPAILHSDVCFNEVGQMNDGPECRCSWAAKKSGLRHNKYAGETIIEKCDLNSS 442

Query: 430  NADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPL-EKLPTCKVIRFNI 488
            N+ +L+HY +   P  N ++ + T I + ++ +  EGFS+F H  L    P   + ++  
Sbjct: 443  NSHRLWHYILYTEPNPNTVVRRSTKINYRDRIYELEGFSVFFHKSLPSNFPQTPLSKWTS 502

Query: 489  QYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRE 548
            +Y I +++E +P  FT++D ELF +YLF +I+E+ DL     +N DGCP +H MPRFV  
Sbjct: 503  EYNIKFMQENIPTNFTIEDLELFHHYLFIDIMEMYDLKTYPLDNTDGCPYYHCMPRFVYN 562

Query: 549  LKDNGKELLPMYRVLEFFTSSFVPVISEKLAKS-KDDLSTYEWQDFADGVKGMIIVKPGS 607
              D GKE+LPM  V+ +   ++  +++E  A+  K D   +  ++FA+ ++G +++    
Sbjct: 563  FPDGGKEILPMSVVMIYLIENYHRLMTESEAQVLKQDADAF--REFAENMRGSLVMNANK 620

Query: 608  KPCAMRVDQLDRE----SETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVA 663
            +P  +RVD +DR     +  + ++P   HFG RP    +  + ++QK+ K Y+++R ++A
Sbjct: 621  RPSTIRVDLIDRSDFLPNSPDTLFPLITHFGVRPSSHTYNSNAEYQKMSKEYLRMRKILA 680

Query: 664  NKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPV 723
             KP+ +AE++ +LA K  +L+ +R +S++KR   +++SSR FY TG+  D+VQH +L+ +
Sbjct: 681  MKPRVSAEERGKLAQKASQLKALRNDSQLKRDFVMSVSSRDFYSTGLFPDIVQHGLLLIL 740

Query: 724  LICHLRFHRSLNVLE-DRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQ 782
               H+RF  SL V E +RI Y F+NR LL+LALTHPSYR N+GTN DHARN+L+NCGVR 
Sbjct: 741  ACAHVRFQWSLQVYEQERIHYVFKNRSLLELALTHPSYRTNYGTNSDHARNTLNNCGVRS 800

Query: 783  PE--YGDRRIHFQ-NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITS 839
             +    DR +  Q + +KRG +TL+ IMSKLG K A +S + HNERLEFLGDAV+EFIT+
Sbjct: 801  SKQRVHDRLVQQQLSAKKRGFHTLLEIMSKLGSKKAEQSPLNHNERLEFLGDAVIEFITT 860

Query: 840  IHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMA 899
            IHLF++F +++EGGLATYR+ +VQN++LA LAK+IGL++FMLYAHG DLCHE +L+HAMA
Sbjct: 861  IHLFYMFSELDEGGLATYRSTMVQNKNLAVLAKKIGLDEFMLYAHGPDLCHESDLRHAMA 920

Query: 900  NCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQ 959
            N FEA+M A++LD GID  D++F   ++ D++     W     HPL+   P+GDR  +  
Sbjct: 921  NAFEAMMAAIYLDAGIDECDRIFGHAMFADSKELLSTWFDLEDHPLKRDNPNGDRHLIND 980

Query: 960  SPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSD 1019
             P L+ L  LE S GV F HIR+LA+ FT R++G+ NLTLG NQRLEFLGDTVLQLIT+D
Sbjct: 981  VPALQLLTELEKSIGVTFKHIRVLAKAFTRRNIGFNNLTLGHNQRLEFLGDTVLQLITTD 1040

Query: 1020 YLY 1022
            YLY
Sbjct: 1041 YLY 1043



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 16/116 (13%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+RLEFLGD V++ IT+ +L+  FP   EG L+  R  +V N+  + +   IG+  +
Sbjct: 1020 LGHNQRLEFLGDTVLQLITTDYLYKHFPYHHEGHLSILRTCLVSNRTQSVICDDIGMTKY 1079

Query: 880  MLYAHGSDLCHEVELKHAM--------ANCFEALMGALFLDGGIDVADQVFSSVLY 927
            ++         +V  K  +        A+  EA +GAL++D G D   +VF  + +
Sbjct: 1080 LVTP-------KVMQKSGLPILRVKDKADLVEAFLGALYVDRGFDYC-KVFCRICF 1127


>gi|27552890|gb|AAH41162.1| RNASEN protein [Homo sapiens]
          Length = 722

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 288/512 (56%), Positives = 386/512 (75%), Gaps = 6/512 (1%)

Query: 516  FHEILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVP 572
            F +ILEL D +LK    +D    CP+FH MPRFVR L D GKE+L M+++L +       
Sbjct: 1    FRDILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKA 60

Query: 573  VISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDA 630
            ++ E+   +       EWQ +A+  KGMI+  PG+KP ++R+DQLDRE    D+  +P  
Sbjct: 61   LVPEEEIANMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPII 120

Query: 631  VHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNS 690
            VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK++LA +E+ LQ++R  +
Sbjct: 121  VHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKN 180

Query: 691  KMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYL 750
             M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ L  L+  I Y FQ+R L
Sbjct: 181  TMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCL 240

Query: 751  LQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKL 810
            LQLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  + RK+GINTLINIMS+L
Sbjct: 241  LQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRL 300

Query: 811  GRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
            G+   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGGLATYR AIVQNQHLA L
Sbjct: 301  GQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 360

Query: 871  AKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDN 930
            AK++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G ++ A Q+F  +L+ D 
Sbjct: 361  AKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDP 420

Query: 931  EVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTR 990
            ++R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT R
Sbjct: 421  DLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLR 479

Query: 991  SMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            ++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 480  TVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 511



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G+++
Sbjct: 487 TLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE 546

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
           + +    +     +  K  +A+  E+ + AL++D  ++
Sbjct: 547 YAITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLE 583


>gi|256077671|ref|XP_002575125.1| ribonuclease III [Schistosoma mansoni]
 gi|353232644|emb|CCD79999.1| putative ribonuclease III [Schistosoma mansoni]
          Length = 1531

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 299/663 (45%), Positives = 426/663 (64%), Gaps = 11/663 (1%)

Query: 370  ELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTN 429
            E+  K  HP+RLHP++W N+  E NDGP C C  K  R G  HN Y GE     C P++N
Sbjct: 457  EVAHKIEHPNRLHPDIWHNEANEFNDGPACSCKPK-YRIGPLHNQYEGEQPIPLCIPESN 515

Query: 430  NADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQ 489
            N ++LYHYRV +SP TNF+   P+ I H+  +++F+GFSLF H+ L+K P C+V+RFN+ 
Sbjct: 516  NRNRLYHYRVIISPTTNFVQPIPSKITHNEHDYLFDGFSLFMHYRLDKPPPCQVLRFNLL 575

Query: 490  YTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVREL 549
            Y I  IEE+ P  FTV+  +L   Y+F E+LEL+DL+ K    K+ C   H+MPRF+R  
Sbjct: 576  YDIFPIEEEFPQYFTVRSLDLLTQYVFIELLELLDLNWKPYGAKESCNVIHLMPRFIRIF 635

Query: 550  KDNG--KELLPMYRVL-EFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPG 606
             +N    ELLP++ ++  +   +  PVI+     S   ++T EW +    ++G +   PG
Sbjct: 636  DNNTVIGELLPVHVIMRHWLEEALTPVINMMELSSIQHMTTIEWSNHIANLRGTLACFPG 695

Query: 607  SKPCAMRVDQLDRESETND------IYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRH 660
             KP  +R+DQLDR+S T        IYP  VH    P++L     P ++ + K ++KL++
Sbjct: 696  KKPSTIRIDQLDRQSVTGQSNQTILIYPLIVHMTYTPMKLSLTREPKYKCVLKNFMKLQY 755

Query: 661  LVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAML 720
            L+ NKP+ +  D+ +L      L+EM  +   +R +TV IS  GFYRTG+  D+ Q+A+ 
Sbjct: 756  LMMNKPRISTSDRVQLVQLANELEEMEHSGVHRREITVEISCEGFYRTGMRPDIPQYALN 815

Query: 721  IPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRE-NFGTNPDHARNSLSNCG 779
            +  LI HLRFH+SL  LE+R+ Y F ++ LL  +LTHPSYR  NFGTN DH +NSL +CG
Sbjct: 816  LVSLIAHLRFHKSLESLENRLGYTFNDKSLLHQSLTHPSYRRTNFGTNQDHFQNSLVSCG 875

Query: 780  VRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITS 839
             R  EYGD+   ++  RK+G+  +I +MS L +     SNI  NERLEFLGDAVVE I+S
Sbjct: 876  PRILEYGDKLELYKAWRKKGLTKMIQVMSFLPKMHEERSNIYGNERLEFLGDAVVEVISS 935

Query: 840  IHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMA 899
            IHLF +FP++ EG L  YR AIVQNQHLA LA R+G+  ++LY H  D C++    +A +
Sbjct: 936  IHLFFMFPELSEGHLDAYRQAIVQNQHLAELAVRLGIHKYLLYTHSVDFCYDSTFIYARS 995

Query: 900  NCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQ 959
            + FEALM A+ LD G+D+ D++F +VL+ D+E   + W+  P HPLQ Q P+GDR W  +
Sbjct: 996  DAFEALMAAITLDAGLDIVDRIFGAVLFGDDERIHRVWVQIPLHPLQSQCPEGDRSWATK 1055

Query: 960  SPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSD 1019
             P+LK+L  LE + G+ F H+R+LAR  T R  G+   TLG NQRLEFLGD++L+ +++D
Sbjct: 1056 VPMLKKLCTLEDTLGIKFKHLRVLARAMTIRKTGFNFYTLGDNQRLEFLGDSLLKYVSTD 1115

Query: 1020 YLY 1022
            YL+
Sbjct: 1116 YLF 1118



 Score = 63.9 bits (154), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 70/120 (58%), Gaps = 6/120 (5%)

Query: 823  NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
            N+RLEFLGD++++++++ +LF  FP   EG L+  + ++V     A +   +GLE ++++
Sbjct: 1098 NQRLEFLGDSLLKYVSTDYLFRHFPRHHEGHLSLLKNSLVNKYTQASVCSELGLEHYVIH 1157

Query: 883  AHGSDLCHEVELKHAM--ANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRF---KQW 937
             + +D C+  + ++    A+  EA +GALF+D  +   ++ F  + +    V F   ++W
Sbjct: 1158 RNKNDNCNNSQNQNVKYRADLLEAFIGALFVDKDLAWVER-FCQICFWPRLVEFILKQEW 1216


>gi|29748104|gb|AAH50057.1| Rnasen protein, partial [Mus musculus]
          Length = 705

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 278/489 (56%), Positives = 374/489 (76%), Gaps = 3/489 (0%)

Query: 536  CPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFAD 595
            CP+FH MPRFVR L D GKE+L M+++L +       ++ E+   +       EWQ +A+
Sbjct: 7    CPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAE 66

Query: 596  GVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWK 653
              KGMI+  PG+KP ++R+DQLDRE    ++  +P  VHFG RP QL +AG P +QKLWK
Sbjct: 67   ECKGMIVTNPGTKPSSVRIDQLDREQFNPEVITFPIIVHFGIRPAQLSYAGDPQYQKLWK 126

Query: 654  GYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCD 713
             YVKLRHL+AN PK    DK++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D
Sbjct: 127  SYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSD 186

Query: 714  MVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARN 773
            + QHAM++PVL  H+R+H+ L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARN
Sbjct: 187  VCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARN 246

Query: 774  SLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAV 833
            SLSNCG+RQP+YGDR++H  + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAV
Sbjct: 247  SLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAV 306

Query: 834  VEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVE 893
            VEF+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +
Sbjct: 307  VEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCSESD 366

Query: 894  LKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGD 953
            L+HAMANCFEAL+GA++L+G ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ D
Sbjct: 367  LRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTD 425

Query: 954  RQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVL 1013
            RQ +E SP+L++L   E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++
Sbjct: 426  RQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIM 485

Query: 1014 QLITSDYLY 1022
            QL+ ++YL+
Sbjct: 486  QLVATEYLF 494



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 59/98 (60%), Gaps = 1/98 (1%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
            + HN+R+EFLGD++++ + + +LF  FPD  E  L   R+++V N+  A +A+ +G+++
Sbjct: 470 TLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHERHLTLLRSSLVNNRTQAKVAEELGMQE 529

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
           + +    +     +  K  +A+  E+ + AL++D  ++
Sbjct: 530 YAITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLE 566


>gi|256077669|ref|XP_002575124.1| ribonuclease III [Schistosoma mansoni]
 gi|353232645|emb|CCD80000.1| putative ribonuclease III [Schistosoma mansoni]
          Length = 1577

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 303/709 (42%), Positives = 429/709 (60%), Gaps = 57/709 (8%)

Query: 370  ELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTN 429
            E+  K  HP+RLHP++W N+  E NDGP C C  K  R G  HN Y GE     C P++N
Sbjct: 457  EVAHKIEHPNRLHPDIWHNEANEFNDGPACSCKPK-YRIGPLHNQYEGEQPIPLCIPESN 515

Query: 430  NADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQ 489
            N ++LYHYRV +SP TNF+   P+ I H+  +++F+GFSLF H+ L+K P C+V+RFN+ 
Sbjct: 516  NRNRLYHYRVIISPTTNFVQPIPSKITHNEHDYLFDGFSLFMHYRLDKPPPCQVLRFNLL 575

Query: 490  YTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVREL 549
            Y I  IEE+ P  FTV+  +L   Y+F E+LEL+DL+ K    K+ C   H+MPRF+R L
Sbjct: 576  YDIFPIEEEFPQYFTVRSLDLLTQYVFIELLELLDLNWKPYGAKESCNVIHLMPRFIRIL 635

Query: 550  K-------------------------DNGKE-----------------------LLPMYR 561
                                      DNGKE                       LLP++ 
Sbjct: 636  SNTTITTNDNFSITTTATTTNNGISVDNGKEHNVELNKSIVCVDNSDNNTVIGELLPVHV 695

Query: 562  VL-EFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRE 620
            ++  +   +  PVI+     S   ++T EW +    ++G +   PG KP  +R+DQLDR+
Sbjct: 696  IMRHWLEEALTPVINMMELSSIQHMTTIEWSNHIANLRGTLACFPGKKPSTIRIDQLDRQ 755

Query: 621  SETND------IYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKR 674
            S T        IYP  VH    P++L     P ++ + K ++KL++L+ NKP+ +  D+ 
Sbjct: 756  SVTGQSNQTILIYPLIVHMTYTPMKLSLTREPKYKCVLKNFMKLQYLMMNKPRISTSDRV 815

Query: 675  RLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSL 734
            +L      L+EM  +   +R +TV IS  GFYRTG+  D+ Q+A+ +  LI HLRFH+SL
Sbjct: 816  QLVQLANELEEMEHSGVHRREITVEISCEGFYRTGMRPDIPQYALNLVSLIAHLRFHKSL 875

Query: 735  NVLEDRIQYKFQNRYLLQLALTHPSYRE-NFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
              LE+R+ Y F ++ LL  +LTHPSYR  NFGTN DH +NSL +CG R  EYGD+   ++
Sbjct: 876  ESLENRLGYTFNDKSLLHQSLTHPSYRRTNFGTNQDHFQNSLVSCGPRILEYGDKLELYK 935

Query: 794  NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
              RK+G+  +I +MS L +     SNI  NERLEFLGDAVVE I+SIHLF +FP++ EG 
Sbjct: 936  AWRKKGLTKMIQVMSFLPKMHEERSNIYGNERLEFLGDAVVEVISSIHLFFMFPELSEGH 995

Query: 854  LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
            L  YR AIVQNQHLA LA R+G+  ++LY H  D C++    +A ++ FEALM A+ LD 
Sbjct: 996  LDAYRQAIVQNQHLAELAVRLGIHKYLLYTHSVDFCYDSTFIYARSDAFEALMAAITLDA 1055

Query: 914  GIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSS 973
            G+D+ D++F +VL+ D+E   + W+  P HPLQ Q P+GDR W  + P+LK+L  LE + 
Sbjct: 1056 GLDIVDRIFGAVLFGDDERIHRVWVQIPLHPLQSQCPEGDRSWATKVPMLKKLCTLEDTL 1115

Query: 974  GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            G+ F H+R+LAR  T R  G+   TLG NQRLEFLGD++L+ +++DYL+
Sbjct: 1116 GIKFKHLRVLARAMTIRKTGFNFYTLGDNQRLEFLGDSLLKYVSTDYLF 1164



 Score = 63.9 bits (154), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 70/120 (58%), Gaps = 6/120 (5%)

Query: 823  NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
            N+RLEFLGD++++++++ +LF  FP   EG L+  + ++V     A +   +GLE ++++
Sbjct: 1144 NQRLEFLGDSLLKYVSTDYLFRHFPRHHEGHLSLLKNSLVNKYTQASVCSELGLEHYVIH 1203

Query: 883  AHGSDLCHEVELKHAM--ANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRF---KQW 937
             + +D C+  + ++    A+  EA +GALF+D  +   ++ F  + +    V F   ++W
Sbjct: 1204 RNKNDNCNNSQNQNVKYRADLLEAFIGALFVDKDLAWVER-FCQICFWPRLVEFILKQEW 1262


>gi|358340675|dbj|GAA48519.1| ribonuclease III [Clonorchis sinensis]
          Length = 1523

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 301/676 (44%), Positives = 419/676 (61%), Gaps = 24/676 (3%)

Query: 370  ELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTN 429
            E+  K +HP RLHP++W N+  E NDGP C C  K  R G  HN Y GE+    C  ++N
Sbjct: 447  EVAYKLSHPSRLHPDIWHNEAQEFNDGPACCCQPK-YRIGPLHNQYEGEERVPECVQESN 505

Query: 430  NADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQ 489
            N D+LYHYRV + P TNF+   PT I  +  +++FEGFSLF H+ L+  P C+++RFN+ 
Sbjct: 506  NRDRLYHYRVLIIPTTNFVQACPTTIPFNGNDYVFEGFSLFLHYKLDSPPPCQLLRFNLL 565

Query: 490  YTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVREL 549
            Y I  IEE  P  FTV+  +L   Y+F E+LEL+DL  +     DGCP  H+MPRF+R +
Sbjct: 566  YDIFPIEEDFPELFTVRALDLITQYVFVELLELLDLSWRPLGITDGCPVVHLMPRFIRVV 625

Query: 550  KDNGK---------------ELLPMYRVLEFFTS-SFVPVISEKLAKSKDDLSTYEWQDF 593
            + +                 ELLP+  VL++    +  P++           S+ EW ++
Sbjct: 626  EPSPDPNDPQSSSKEPSCVGELLPINVVLQYLLQEALTPLVDMMELAVIRRYSSTEWSNY 685

Query: 594  ADGVKGMIIVKPGSKPCAMRVDQLDRES---ETND---IYPDAVHFGSRPLQLCFAGSPD 647
               ++G +   PG KP A+RVDQ+DR S   E +D   IYP  VH    P++L     P 
Sbjct: 686  IAPLRGTLTTFPGKKPPAIRVDQMDRRSLAGEPSDGVLIYPLIVHMTFTPMKLSLTREPR 745

Query: 648  FQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYR 707
            ++ + K ++KL++L+ NKP+ T +D+  LA     L+ M  +   +R +TV +SS GFYR
Sbjct: 746  YKCVLKNFMKLQYLMMNKPRITPDDRSELAHLASELEAMEHSGVHRREITVELSSEGFYR 805

Query: 708  TGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRE-NFGT 766
            TG+  D+ QHA+ +  LI HLRFH+SL  LE R+ Y F+N+ LL  ALTHPSYR  NFGT
Sbjct: 806  TGLRPDVSQHAINLVSLISHLRFHKSLESLEARLGYTFKNKSLLHQALTHPSYRRTNFGT 865

Query: 767  NPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERL 826
            N DH +NSL +CG R  EYGD+   ++  RK+G+  +I +MS L +     SNI  NERL
Sbjct: 866  NQDHFQNSLVSCGPRIIEYGDKLQLYKAWRKKGLTKMIQVMSVLPKMHEERSNIYGNERL 925

Query: 827  EFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGS 886
            EFLGDAV+E I+SIHLF +FP++ EG L  YR AIVQNQHLA LA R+G+  F+LY H  
Sbjct: 926  EFLGDAVIEVISSIHLFFMFPELPEGNLDAYRQAIVQNQHLAELAVRLGIHKFLLYTHSV 985

Query: 887  DLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQ 946
            D C++    +A ++ FEALM A+ LD G+D  D++F +VL+ D     + W+  P HPLQ
Sbjct: 986  DFCYDSTFIYARSDAFEALMAAIALDAGLDEVDRIFGAVLFGDEPRIHRVWVKIPPHPLQ 1045

Query: 947  EQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLE 1006
             Q PDGDR W    P+LK+L  LE + G+ F H+R+LAR  T R  G+   T G NQRLE
Sbjct: 1046 SQCPDGDRSWAVNVPMLKKLPILEENLGINFKHLRVLARAMTIRKTGFNFYTFGDNQRLE 1105

Query: 1007 FLGDTVLQLITSDYLY 1022
            FLGD++L+ +++DYL+
Sbjct: 1106 FLGDSLLKYVSTDYLF 1121



 Score = 48.1 bits (113), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 39/59 (66%)

Query: 823  NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
            N+RLEFLGD++++++++ +LF  FP   EG L+  + ++V     A +   +GL+ F++
Sbjct: 1101 NQRLEFLGDSLLKYVSTDYLFRHFPRHHEGHLSLLKNSLVNKYTQAAVCSELGLDQFVI 1159


>gi|157326505|gb|ABV44384.1| ASL1/DROSHA fusion [Mus musculus]
          Length = 756

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 267/474 (56%), Positives = 362/474 (76%), Gaps = 3/474 (0%)

Query: 551  DNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPC 610
            D GKE+L M+++L +       ++ E+   +       EWQ +A+  KGMI+  PG+KP 
Sbjct: 73   DGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPGTKPS 132

Query: 611  AMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKR 668
            ++R+DQLDRE    ++  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK 
Sbjct: 133  SVRIDQLDREQFNPEVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKV 192

Query: 669  TAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHL 728
               DK++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+
Sbjct: 193  KQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHI 252

Query: 729  RFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDR 788
            R+H+ L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR
Sbjct: 253  RYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDR 312

Query: 789  RIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPD 848
            ++H  + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL+++FP 
Sbjct: 313  KVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPS 372

Query: 849  IEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGA 908
            +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA
Sbjct: 373  LEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGA 432

Query: 909  LFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQY 968
            ++L+G ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L++L  
Sbjct: 433  VYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTE 491

Query: 969  LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
             E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 492  FEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 545



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G+++
Sbjct: 521 TLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE 580

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
           + +    +     +  K  +A+  E+ + AL++D  ++
Sbjct: 581 YAITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLE 617


>gi|355716698|gb|AES05694.1| ribonuclease type III, nuclear [Mustela putorius furo]
          Length = 593

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 250/417 (59%), Positives = 331/417 (79%), Gaps = 3/417 (0%)

Query: 608  KPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANK 665
            KP ++R+DQLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN 
Sbjct: 1    KPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANS 60

Query: 666  PKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLI 725
            PK    DK++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHAM++PVL 
Sbjct: 61   PKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLT 120

Query: 726  CHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEY 785
             H+R+H+ L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQP+Y
Sbjct: 121  HHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKY 180

Query: 786  GDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHV 845
            GDR++H  + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+TS+HL+++
Sbjct: 181  GDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYL 240

Query: 846  FPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEAL 905
            FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEAL
Sbjct: 241  FPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEAL 300

Query: 906  MGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQ 965
            +GA++L+G ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L++
Sbjct: 301  IGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQK 359

Query: 966  LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            L   E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 360  LTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 416



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G+++
Sbjct: 392 TLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE 451

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
           + +    +     +  K  +A+  E+ + AL++D  ++
Sbjct: 452 YAITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLE 488


>gi|188593372|emb|CAP07635.1| drosha protein [Oikopleura dioica]
          Length = 1096

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 269/668 (40%), Positives = 393/668 (58%), Gaps = 22/668 (3%)

Query: 375  QNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKL 434
            +NHPDR+  ELW+N+    NDGPLC+C    ++ GI H IY  E +        NN DKL
Sbjct: 160  KNHPDRMCAELWYNEPKMANDGPLCKCEM-DQQHGINHGIYPQEVQPPALPAKNNNLDKL 218

Query: 435  YHYRVTVSPPTNFLINK--PTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTI 492
            +HYR+TVSP  NF       T I +  + + F GFS+ SH  L K+PT  V R++  + I
Sbjct: 219  FHYRITVSPMKNFAFKDHITTKINYLEKCYRFAGFSILSHRDLSKVPTIPVTRYHNDHAI 278

Query: 493  VYIEEKVPNGFTVKDTELFFNYLFHEILELVDL------DLKSANNKDGCPQ------FH 540
              + E  P  F + D +LF ++ F + LEL D       D  S   + G         F+
Sbjct: 279  TLLPEPAPTSFCLADLDLFADFFFKDTLELYDWVNGLIPDAPSVKTELGEENSSSQKFFY 338

Query: 541  IMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGM 600
             +PRF      N  +LL M +++++F     P+I +   K   D     W+D+    +G 
Sbjct: 339  FLPRFESRGLSNELQLLGMDQIMQYFIGCDKPLIDQTDLKRLIDSDFDSWEDYIKTFRGQ 398

Query: 601  IIVKPGSKPCAMRVDQLDRESETNDI------YPDAVHFGSRPLQLCFAGSPDFQKLWKG 654
            ++  PG KP  +R+DQLDRE     +      +P  VHFG RP  L +AG P +QK+++ 
Sbjct: 399  LVTNPGKKPSTIRLDQLDREKTMTGVANQEHRWPIIVHFGVRPANLSYAGDPVYQKVYRT 458

Query: 655  YVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDM 714
            Y K RHL+ NKP+   +   ++   E  LQ+MR  + M+R VT  IS   F  TGI  DM
Sbjct: 459  YQKYRHLITNKPRIQEQHWSKIRDLEVLLQKMRRMADMQREVTNEISCENFRLTGIFPDM 518

Query: 715  VQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNS 774
              HA L+PV+  H+R+  SL  L+  + Y+F+N   +  A+THPS   N+G NPDH RNS
Sbjct: 519  AAHAFLLPVVTHHIRYIHSLESLQTILGYQFKNLSWITRAMTHPSAVYNYGENPDHVRNS 578

Query: 775  LSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVV 834
             +NCG+R+P YG+        RKRGI TLI +M+ LG     ES I + ER EFLGDAV+
Sbjct: 579  TTNCGIRKPIYGEEGPSRPYERKRGIVTLIKVMALLGTSEPKESPINYLERPEFLGDAVL 638

Query: 835  EFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVEL 894
             F+ S+ +FH+FP++ EG L+  R A+V N HLA LA+++ LED+ +Y H  DL    +L
Sbjct: 639  GFVVSVSIFHLFPNLGEGALSMLRCALVCNVHLAALAQKLTLEDYFVYIHSQDLAKREDL 698

Query: 895  KHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDR 954
             +A+ANCFEA++GA+++DGG++   Q+ + VL+ D  ++ + W+ +P HPLQ++ PDGDR
Sbjct: 699  NNALANCFEAVLGAIYMDGGLEPVRQLLARVLFDDKALQ-RVWLDFPAHPLQQEYPDGDR 757

Query: 955  QWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQ 1014
              +E S +LK+   LE   GV F +IRLLA+  T +++ Y ++T G NQRLEFLGD +  
Sbjct: 758  AQIESSKVLKRCAELEELLGVKFKNIRLLAKALTLKNVKYNDITKGHNQRLEFLGDAICN 817

Query: 1015 LITSDYLY 1022
             + ++YL+
Sbjct: 818  FLAAEYLF 825



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 4/127 (3%)

Query: 804 INIMSK-LGRKVATESNIT--HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAA 860
           I +++K L  K    ++IT  HN+RLEFLGDA+  F+ + +LF  FP   EG L   R  
Sbjct: 783 IRLLAKALTLKNVKYNDITKGHNQRLEFLGDAICNFLAAEYLFKHFPLHHEGHLTLLRCT 842

Query: 861 IVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ 920
           +V     A +A++IGL+ F++             +  +A+  E+ +GALF+D GI +A  
Sbjct: 843 MVGAPTQALVAQQIGLDKFVISRQSLSHDKMGWKQKILADLMESFIGALFIDRGI-IAVD 901

Query: 921 VFSSVLY 927
           VF  V +
Sbjct: 902 VFMKVAF 908


>gi|432104658|gb|ELK31270.1| Ribonuclease 3 [Myotis davidii]
          Length = 1225

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 273/618 (44%), Positives = 365/618 (59%), Gaps = 97/618 (15%)

Query: 263 KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYT 318
           K +W R   ++ YY+     +  D +   T + R + D+FE  + N              
Sbjct: 400 KPVWIRCTHSENYYSSDPMDQVGDSTVVGTSRLRDLYDKFEEELGN-------------R 446

Query: 319 ANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHP 378
             + K  R   +  K K      + + S        + S   D+E  + + E++ K+ HP
Sbjct: 447 QEKAKAARPPWEPPKTKLDEDLESSSESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHP 506

Query: 379 DRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYR 438
           DRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR
Sbjct: 507 DRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYR 566

Query: 439 VTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEK 498
           +TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE 
Sbjct: 567 ITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEM 626

Query: 499 VPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLP 558
           +P  F VK  ELF  +LF +ILEL D +                      LKD GKE+L 
Sbjct: 627 MPENFCVKGLELFSLFLFRDILELYDWN----------------------LKDGGKEVLS 664

Query: 559 MYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLD 618
           M+++L +       ++ E+   +       EWQ +A+  KGMI+  PG+KP ++R+DQLD
Sbjct: 665 MHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRIDQLD 724

Query: 619 RESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRL 676
           RE    D+  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK++L
Sbjct: 725 REQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDKQKL 784

Query: 677 AAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNV 736
           A +E                                    HAM++PVL  H+R+H+ L  
Sbjct: 785 AQRE------------------------------------HAMMLPVLTHHIRYHQCLMH 808

Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
           L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  + R
Sbjct: 809 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMR 868

Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
           K+GINTLINIMS+LG+   T S                    S+HL+++FP +EEGGLAT
Sbjct: 869 KKGINTLINIMSRLGQDDPTPS--------------------SVHLYYLFPSLEEGGLAT 908

Query: 857 YRAAIVQNQHLAHLAKRI 874
           YR AIVQNQHLA LAK +
Sbjct: 909 YRTAIVQNQHLAMLAKDL 926



 Score =  109 bits (273), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 68/86 (79%), Gaps = 1/86 (1%)

Query: 937  WMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN 996
            W+ YP HPLQ + P+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT R++G+ +
Sbjct: 930  WLNYPLHPLQVK-PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNH 988

Query: 997  LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 989  LTLGHNQRMEFLGDSIMQLVATEYLF 1014



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 991  LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1050

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1051 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1096


>gi|62088582|dbj|BAD92738.1| nuclear RNase III Drosha variant [Homo sapiens]
          Length = 432

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 239/420 (56%), Positives = 309/420 (73%), Gaps = 5/420 (1%)

Query: 424 CNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKV 483
           C P TNNA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKV
Sbjct: 12  CRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKV 71

Query: 484 IRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFH 540
           IRFNI YTI +IEE +P  F VK  ELF  +LF +ILEL D +LK    +D    CP+FH
Sbjct: 72  IRFNIDYTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFH 131

Query: 541 IMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGM 600
            MPRFVR L D GKE+L M+++L +       ++ E+   +       EWQ +A+  KGM
Sbjct: 132 FMPRFVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGM 191

Query: 601 IIVKPGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKL 658
           I+  PG+KP ++R+DQLDRE    D+  +P  VHFG RP QL +AG P +QKLWK YVKL
Sbjct: 192 IVTNPGTKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKL 251

Query: 659 RHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHA 718
           RHL+AN PK    DK++LA +E+ LQ++R  + M+R VTV +SS+GF++TGI  D+ QHA
Sbjct: 252 RHLLANSPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHA 311

Query: 719 MLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNC 778
           M++PVL  H+R+H+ L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLSNC
Sbjct: 312 MMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNC 371

Query: 779 GVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFIT 838
           G+RQP+YGDR++H  + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF+T
Sbjct: 372 GIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLT 431


>gi|4768838|gb|AAD29637.1|AF116910_1 putative ribonuclease III [Homo sapiens]
          Length = 541

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 204/331 (61%), Positives = 270/331 (81%), Gaps = 1/331 (0%)

Query: 692  MKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLL 751
            M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ L  L+  I Y FQ+R LL
Sbjct: 1    MRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLL 60

Query: 752  QLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLG 811
            QLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  + RK+GINTLINIMS+LG
Sbjct: 61   QLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLG 120

Query: 812  RKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLA 871
            +   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGGLATYR AIVQNQHLA LA
Sbjct: 121  QDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLA 180

Query: 872  KRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
            K++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G ++ A Q+F  +L+ D +
Sbjct: 181  KKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPD 240

Query: 932  VRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRS 991
            +R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT R+
Sbjct: 241  LR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRT 299

Query: 992  MGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            +G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 300  VGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 330



 Score = 60.1 bits (144), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G+++
Sbjct: 306 TLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE 365

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
           + +    +     +  K  +A+  E+ + AL++D  ++
Sbjct: 366 YAITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLE 402


>gi|24637290|gb|AAN63637.1|AF440766_1 ribonuclease III [Mus musculus]
          Length = 541

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 203/331 (61%), Positives = 270/331 (81%), Gaps = 1/331 (0%)

Query: 692  MKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLL 751
            M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ L  L+  I Y FQ+R LL
Sbjct: 1    MRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLL 60

Query: 752  QLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLG 811
            QLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  + RK+GINTLINIMS+LG
Sbjct: 61   QLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLG 120

Query: 812  RKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLA 871
            +   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGGLATYR A+VQNQHLA LA
Sbjct: 121  QDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAMVQNQHLAMLA 180

Query: 872  KRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
            K++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G ++ A Q+F  +L+ D +
Sbjct: 181  KKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPD 240

Query: 932  VRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRS 991
            +R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT R+
Sbjct: 241  LR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRT 299

Query: 992  MGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            +G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 300  VGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 330



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 61/98 (62%), Gaps = 1/98 (1%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G+++
Sbjct: 306 TLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE 365

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
           + +    +     +  K  +A+ +E+ + AL++D  ++
Sbjct: 366 YAITNDKTKRPVALRTK-TLADLWESFIAALYIDKDLE 402


>gi|392886816|ref|NP_001122460.2| Protein DRSH-1, isoform b [Caenorhabditis elegans]
 gi|358246433|emb|CAP19331.2| Protein DRSH-1, isoform b [Caenorhabditis elegans]
          Length = 1081

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 248/662 (37%), Positives = 377/662 (56%), Gaps = 37/662 (5%)

Query: 374  KQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADK 433
            K+ HP+ +HP++ FN+KG  N+GP CRC    +  G++H  YAGED+   C    +N + 
Sbjct: 250  KKTHPNGIHPDISFNEKGLGNEGPECRCPEPIKTCGLKHGYYAGEDKAIDCK--KSNGEN 307

Query: 434  LYHY--RVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPL----EKLPTCKVIRFN 487
            L++Y  RVT  P  N L      I  + +EF FEGFSL +H PL     + P CK   ++
Sbjct: 308  LHYYTLRVTPLPSENQLYRTHMAI--NGEEFEFEGFSLITHAPLPDCMTRAPICK---YS 362

Query: 488  IQYTIVYIEEKVPNG-FTVKDTELFFNYLFHEILELVDLDLKSAN---NKDGCPQFHIMP 543
            + Y    +EE +P+  F  +D ++ F Y+FHEI E++D +L+  +   + + CP  HIMP
Sbjct: 363  MDYEFQLVEEFMPDECFDPEDCDMLFEYIFHEIFEMLDFELRPKHIPSDVESCPMIHIMP 422

Query: 544  RFVRELKDNGKELLPMYRVLEFFTS-SFVPVISEKLAKSKDDLSTYEWQDFADGVKGMII 602
            RFV + KD+  +L     VL +FTS     ++S +      D    ++       K  I+
Sbjct: 423  RFV-QTKDDLVQLWSSKTVLAYFTSKGSSEIMSPEDVNRLCDAQIDQFTRNTSKHKQSIV 481

Query: 603  VKPGSKPCAMRVDQLDRESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLV 662
            +    KP A+R D  +R+ E  ++Y   VH   R         P    L K    L  ++
Sbjct: 482  LNTKFKPSAIRADWFERDEEKKEVY--VVHNAIRAQTYTAISLPRIAFLEK---TLNKMI 536

Query: 663  ANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIP 722
              K      +K     K + L+ ++  ++  R + +     GF  TG+  D+  H ++  
Sbjct: 537  QEKQSSGVYNKDFEKTKNE-LEHLKRENRSARNLKLREPVAGFIETGLKPDVAAHVVMTI 595

Query: 723  VLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQ 782
            +   H+R++ SL+V E+ I+YKF +R +++LAL H S++ ++GT  DH +N ++NCG R+
Sbjct: 596  LACHHIRYNFSLDVFEEVIEYKFNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRR 655

Query: 783  PEYG--DRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSI 840
             +YG  D+R      +KRGI +L NIM    +  +    I HNERLE+LGDAVVE I S 
Sbjct: 656  -KYGAEDKR-----EKKRGIMSLFNIM----KGTSGGEPILHNERLEYLGDAVVELIVSH 705

Query: 841  HLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMAN 900
            HL+ +     EGGLATYR A+VQN++LA LAK   +++ + Y+HG+DL +  E KHA+AN
Sbjct: 706  HLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQYSHGADLINVAEFKHALAN 765

Query: 901  CFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQS 960
             FEA+M A++LDGG+   D +FS  +Y    V  ++W +  +H L+ ++P GDR     +
Sbjct: 766  AFEAVMAAIYLDGGLAPCDVIFSKAMYGHQPVLKEKWDHINEHELKREDPQGDRDLSFIT 825

Query: 961  PLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDY 1020
            P L     LE   G+ FN+IRLLA+ FT R++   +LT G NQRLE+LGD+VLQLI SD+
Sbjct: 826  PTLSTFHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDF 885

Query: 1021 LY 1022
            LY
Sbjct: 886  LY 887



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 3/95 (3%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HN+RLE+LGD+V++ I S  L+  FP   EG ++  R ++V NQ  A +   +G  +F++
Sbjct: 866 HNQRLEWLGDSVLQLIVSDFLYRRFPYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVI 925

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            A       E++LK   A+  EA +GAL++D GI+
Sbjct: 926 KAPYK--TPELKLKDK-ADLVEAFIGALYVDRGIE 957


>gi|17506883|ref|NP_492599.1| Protein DRSH-1, isoform a [Caenorhabditis elegans]
 gi|20141625|sp|O01326.2|RNC_CAEEL RecName: Full=Ribonuclease 3; AltName: Full=Protein drosha; AltName:
            Full=Ribonuclease III; Short=RNase III
 gi|15718161|emb|CAB03006.3| Protein DRSH-1, isoform a [Caenorhabditis elegans]
          Length = 1086

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 247/662 (37%), Positives = 376/662 (56%), Gaps = 35/662 (5%)

Query: 374  KQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADK 433
            K+ HP+ +HP++ FN+KG  N+GP CRC    +  G++H  YAGED+   C    +N + 
Sbjct: 250  KKTHPNGIHPDISFNEKGLGNEGPECRCPEPIKTCGLKHGYYAGEDKAIDCK--KSNGEN 307

Query: 434  LYHY--RVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPL----EKLPTCKVIRFN 487
            L++Y  RVT  P  N L      I  + +EF FEGFSL +H PL     + P CK   ++
Sbjct: 308  LHYYTLRVTPLPSENQLYRTHMAI--NGEEFEFEGFSLITHAPLPDCMTRAPICK---YS 362

Query: 488  IQYTIVYIEEKVPNG-FTVKDTELFFNYLFHEILELVDLDLKSAN---NKDGCPQFHIMP 543
            + Y    +EE +P+  F  +D ++ F Y+FHEI E++D +L+  +   + + CP  HIMP
Sbjct: 363  MDYEFQLVEEFMPDECFDPEDCDMLFEYIFHEIFEMLDFELRPKHIPSDVESCPMIHIMP 422

Query: 544  RFVRELKDNGKELLPMYRVLEFFTS-SFVPVISEKLAKSKDDLSTYEWQDFADGVKGMII 602
            RFV + KD+  +L     VL +FTS     ++S +      D    ++       K  I+
Sbjct: 423  RFV-QTKDDLVQLWSSKTVLAYFTSKGSSEIMSPEDVNRLCDAQIDQFTRNTSKHKQSIV 481

Query: 603  VKPGSKPCAMRVDQLDRESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLV 662
            +    KP A+R D  +R+ E  ++Y   VH   R         P    L K    L  ++
Sbjct: 482  LNTKFKPSAIRADWFERDEEKKEVY--VVHNAIRAQTYTAISLPRIAFLEK---TLNKMI 536

Query: 663  ANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIP 722
              K      +K     K + L+ ++  ++  R + +     GF  TG+  D+  H ++  
Sbjct: 537  QEKQSSGVYNKDFEKTKNE-LEHLKRENRSARNLKLREPVAGFIETGLKPDVAAHVVMTI 595

Query: 723  VLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQ 782
            +   H+R++ SL+V E+ I+YKF +R +++LAL H S++ ++GT  DH +N ++NCG R+
Sbjct: 596  LACHHIRYNFSLDVFEEVIEYKFNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRR 655

Query: 783  PEYG--DRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSI 840
             +YG  D+R   +  R  GI +L NIM    +  +    I HNERLE+LGDAVVE I S 
Sbjct: 656  -KYGAEDKR---EKKRVAGIMSLFNIM----KGTSGGEPILHNERLEYLGDAVVELIVSH 707

Query: 841  HLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMAN 900
            HL+ +     EGGLATYR A+VQN++LA LAK   +++ + Y+HG+DL +  E KHA+AN
Sbjct: 708  HLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQYSHGADLINVAEFKHALAN 767

Query: 901  CFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQS 960
             FEA+M A++LDGG+   D +FS  +Y    V  ++W +  +H L+ ++P GDR     +
Sbjct: 768  AFEAVMAAIYLDGGLAPCDVIFSKAMYGHQPVLKEKWDHINEHELKREDPQGDRDLSFIT 827

Query: 961  PLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDY 1020
            P L     LE   G+ FN+IRLLA+ FT R++   +LT G NQRLE+LGD+VLQLI SD+
Sbjct: 828  PTLSTFHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDF 887

Query: 1021 LY 1022
            LY
Sbjct: 888  LY 889



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 3/95 (3%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HN+RLE+LGD+V++ I S  L+  FP   EG ++  R ++V NQ  A +   +G  +F++
Sbjct: 868 HNQRLEWLGDSVLQLIVSDFLYRRFPYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVI 927

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            A       E++LK   A+  EA +GAL++D GI+
Sbjct: 928 KAPYK--TPELKLKDK-ADLVEAFIGALYVDRGIE 959


>gi|5579373|gb|AAD45518.1|AF160248_1 ribonuclease [Caenorhabditis elegans]
          Length = 860

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 247/662 (37%), Positives = 376/662 (56%), Gaps = 35/662 (5%)

Query: 374  KQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADK 433
            K+ HP+ +HP++ FN+KG  N+GP CRC    +  G++H  YAGED+   C    +N + 
Sbjct: 24   KKTHPNGIHPDISFNEKGLGNEGPECRCPEPIKTCGLKHGYYAGEDKAIDCK--KSNGEN 81

Query: 434  LYHY--RVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPL----EKLPTCKVIRFN 487
            L++Y  RVT  P  N L      I  + +EF FEGFSL +H PL     + P CK   ++
Sbjct: 82   LHYYTLRVTPLPSENQLYRTHMAI--NGEEFEFEGFSLITHAPLPDCMTRAPICK---YS 136

Query: 488  IQYTIVYIEEKVPNG-FTVKDTELFFNYLFHEILELVDLDLKSAN---NKDGCPQFHIMP 543
            + Y    +EE +P+  F  +D ++ F Y+FHEI E++D +L+  +   + + CP  HIMP
Sbjct: 137  MDYEFQLVEEFMPDECFDPEDCDMLFEYIFHEIFEMLDFELRPKHIPSDVESCPMIHIMP 196

Query: 544  RFVRELKDNGKELLPMYRVLEFFTS-SFVPVISEKLAKSKDDLSTYEWQDFADGVKGMII 602
            RFV + KD+  +L     VL +FTS     ++S +      D    ++       K  I+
Sbjct: 197  RFV-QTKDDLVQLWSSKTVLAYFTSKGSSEIMSPEDVNRLCDAQIDQFTRNTSKHKQSIV 255

Query: 603  VKPGSKPCAMRVDQLDRESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLV 662
            +    KP A+R D  +R+ E  ++Y   VH   R         P    L K    L  ++
Sbjct: 256  LNTKFKPSAIRADWFERDEEKKEVY--VVHNAIRAQTYTAISLPRIAFLEK---TLNKMI 310

Query: 663  ANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIP 722
              K      +K     K + L+ ++  ++  R + +     GF  TG+  D+  H ++  
Sbjct: 311  QEKQSSGVYNKDFEKTKNE-LEHLKRENRSARNLKLREPVAGFIETGLKPDVAAHVVMTI 369

Query: 723  VLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQ 782
            +   H+R++ SL+V E+ I+YKF +R +++LAL H S++ ++GT  DH +N ++NCG R+
Sbjct: 370  LACHHIRYNFSLDVFEEVIEYKFNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRR 429

Query: 783  PEYG--DRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSI 840
             +YG  D+R   +  R  GI +L NIM    +  +    I HNERLE+LGDAVVE I S 
Sbjct: 430  -KYGAEDKR---EKKRVAGIMSLFNIM----KGTSGGEPILHNERLEYLGDAVVELIVSH 481

Query: 841  HLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMAN 900
            HL+ +     EGGLATYR A+VQN++LA LAK   +++ + Y+HG+DL +  E KHA+AN
Sbjct: 482  HLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQYSHGADLINVAEFKHALAN 541

Query: 901  CFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQS 960
             FEA+M A++LDGG+   D +FS  +Y    V  ++W +  +H L+ ++P GDR     +
Sbjct: 542  AFEAVMAAIYLDGGLAPCDVIFSKAMYGHQPVLKEKWDHINEHELKREDPQGDRDLSFIT 601

Query: 961  PLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDY 1020
            P L     LE   G+ FN+IRLLA+ FT R++   +LT G NQRLE+LGD+VLQLI SD+
Sbjct: 602  PTLSTFHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDF 661

Query: 1021 LY 1022
            LY
Sbjct: 662  LY 663



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 3/95 (3%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HN+RLE+LGD+V++ I S  L+  FP   EG ++  R ++V NQ  A +   +G  +F++
Sbjct: 642 HNQRLEWLGDSVLQLIVSDFLYRRFPYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVI 701

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            A       E++LK   A+  EA +GAL++D GI+
Sbjct: 702 KAPYK--TPELKLKDK-ADLVEAFIGALYVDRGIE 733


>gi|341891365|gb|EGT47300.1| CBN-DRSH-1 protein [Caenorhabditis brenneri]
          Length = 1003

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 245/663 (36%), Positives = 375/663 (56%), Gaps = 28/663 (4%)

Query: 369  MELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDT 428
            M  + K+ HP+ LHP++ FN+K   NDGP CRC    + +G++H  YAGE++   C   T
Sbjct: 275  MAAERKKTHPNGLHPDISFNEKDIGNDGPECRCPPSIQNNGLKHGYYAGENKVIDCT-RT 333

Query: 429  NNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIR--- 485
              A+ LY+Y + V P  N      T ++ +   + F+GFSL +H PL   P C   R   
Sbjct: 334  GGAN-LYYYTMRVFPAPNDTQIHKTQMQINGDMYTFQGFSLVTHAPL---PICMTRRPIC 389

Query: 486  -FNIQYTIVYIEEKVPNG-FTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFH 540
             + + Y    +EEKVP+  F  +D +    Y+FHEI E+++  L+  +   G   CP  H
Sbjct: 390  MYAMDYEFQLVEEKVPDECFAPEDCDDLQEYIFHEIFEMMNFQLRPKHVPAGIETCPMIH 449

Query: 541  IMPRFVRELKDNGKELLPMYRVLEFFTS-SFVPVISEKLAKSKDDLSTYEWQDFADGVKG 599
            IMPRF    KD    L     VL +F S    P+  ++   S   L+  E+      +K 
Sbjct: 450  IMPRF-ECFKDGLVHLWSSKTVLAYFLSKGGTPLFDKEEVSSHSRLNDEEFTRNTGRLKQ 508

Query: 600  MIIVKPGSKPCAMRVDQLDRESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLR 659
             II+    KP A+R D  +R++E  ++Y   VH   R        +    KL     KL+
Sbjct: 509  SIILNTQFKPSAVRADWFERDAEKREVY--FVHNAIRSASYPIGIAARIAKLENTLNKLK 566

Query: 660  HLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAM 719
            +    K            A +  + +++  ++  R + +     G+  TG+  D+V H  
Sbjct: 567  N---EKRNSYGMPNPEYEATKLEMDKLKEEARAARILKLREPVAGYIDTGLKPDVVAHIA 623

Query: 720  LIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCG 779
            ++ +   H+R++ S++V E+ IQY+F +R L++LA  H S+R ++GT  DH +N ++NCG
Sbjct: 624  MVTIACHHIRYNFSISVFEEIIQYQFNDRRLIELAFIHSSFRTSYGTPIDHVKNIVNNCG 683

Query: 780  VRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITS 839
             R+ +YG      +  +K+GI +L NIM   G ++  E  I HNERLE+LGDAVVE ITS
Sbjct: 684  YRR-KYGTEE---KREKKKGIVSLFNIM---GGEIDGEP-ILHNERLEYLGDAVVELITS 735

Query: 840  IHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMA 899
             HLF + P   EGGLATYR A+VQN++LA LAK   +++ + +AHG+DL +E + KHA+A
Sbjct: 736  HHLFFMLPHHFEGGLATYRTALVQNRNLAKLAKSCRMDEMLQFAHGADLINEADFKHALA 795

Query: 900  NCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQ 959
            N FEA+M A++LDGG+   D +FS  +Y ++    + W +  +H L+ ++P GDR+  + 
Sbjct: 796  NSFEAVMAAVYLDGGLGPCDTIFSKAMYGNDPELKQIWDHCNEHELRREDPLGDRELSQI 855

Query: 960  SPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSD 1019
            +P L     LE   G+ FN+IRLLA+ FT R++   +LT G NQRLE+LGD+VLQL+ SD
Sbjct: 856  TPALASFHELERRLGIQFNNIRLLAKAFTRRNVPNNDLTKGHNQRLEWLGDSVLQLLISD 915

Query: 1020 YLY 1022
            +LY
Sbjct: 916  FLY 918



 Score = 50.1 bits (118), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 5/107 (4%)

Query: 796 RKRGI--NTLINIMSKLGRKVATESNIT--HNERLEFLGDAVVEFITSIHLFHVFPDIEE 851
           R+ GI  N +  +     R+    +++T  HN+RLE+LGD+V++ + S  L+  FP+  E
Sbjct: 867 RRLGIQFNNIRLLAKAFTRRNVPNNDLTKGHNQRLEWLGDSVLQLLISDFLYKNFPNHHE 926

Query: 852 GGLATYRAAIVQNQHLAHLAKRIG-LEDFMLYAHGSDLCHEVELKHA 897
           G ++  R ++V NQ  + +   +G LE   L    +   H+ ELK A
Sbjct: 927 GHMSLLRTSLVSNQTQSVVCDDLGFLEGERLSTGAASNVHKAELKAA 973


>gi|308494532|ref|XP_003109455.1| CRE-DRSH-1 protein [Caenorhabditis remanei]
 gi|308246868|gb|EFO90820.1| CRE-DRSH-1 protein [Caenorhabditis remanei]
          Length = 1073

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 242/667 (36%), Positives = 379/667 (56%), Gaps = 37/667 (5%)

Query: 369  MELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDT 428
            M ++ K+NHP+ + P++ FN+KG  NDGP CRC    +  G++H  YAGE++   C    
Sbjct: 235  MGVERKRNHPNGVDPDISFNEKGLGNDGPECRCPPVIKNRGLKHGFYAGENKVLNCTRIC 294

Query: 429  NNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPL----EKLPTCKVI 484
                 L++Y + V P  N      T +  + + + FEGFS+ +H PL     + P CK  
Sbjct: 295  --GSNLHYYTLQVKPGPNEGQIYKTGMTINGETYEFEGFSMITHAPLPECMTRRPICK-- 350

Query: 485  RFNIQYTIVYIEEKVP-NGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFH 540
             ++++Y    +EE+ P   F  +D    F+Y+FHEI E+ D +L   +   G   CP  H
Sbjct: 351  -YSLEYEFQLVEERFPIECFDPEDCNHLFDYIFHEIFEMFDFNLHPKHLPPGIVSCPVIH 409

Query: 541  IMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFA-----D 595
            IMPRFV  +K+    L     +L +F  +      + L  S++ +   E  D A     +
Sbjct: 410  IMPRFV-AMKNGVAHLWSTKTLLAYFLING----DKDLFNSQEIIDHCEIPDDAFSRVSN 464

Query: 596  GVKGMIIVKPGSKPCAMRVDQLDRESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGY 655
             +K  I++    KP A+R D  +R+SE  ++Y   VH   R        +P   K+ +  
Sbjct: 465  KMKQSILLNTLKKPSALRADWFERDSERREVY--IVHNSIRSQNY---STPILVKIAQLE 519

Query: 656  VKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMV 715
             +L  +   K K+ A   +     ++ L +++   +  R +++  S  G+  TG   D++
Sbjct: 520  KRLNRM--KKDKKFAGKNKEYDVVKRELDQLKDEHRNARYLSIRKSVAGYIDTGFKPDII 577

Query: 716  QHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSL 775
             H  ++ +   H+R++ SL+V E+ I+Y+F +R +++LAL H S+R ++GT PDH +N +
Sbjct: 578  AHIAMVIIASHHIRYNFSLSVFEEIIEYQFNDRKVIELALIHSSFRSHYGTPPDHIKNII 637

Query: 776  SNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVE 835
            SNCG R+ +YG      +  +K+GI +L NIM   G +      I HNERLE+LGDAVVE
Sbjct: 638  SNCGYRR-KYGSEE---KREKKKGIVSLFNIM---GGETEGGEPILHNERLEYLGDAVVE 690

Query: 836  FITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELK 895
             I S HL+ + P   EGGLATYR A+VQN++LA LAK   +++ + YAHG+DL +E E K
Sbjct: 691  LIVSHHLYFMLPHHFEGGLATYRTALVQNRNLADLAKNCRIDEMLQYAHGADLINEAEWK 750

Query: 896  HAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQ 955
            HA+AN FEA++ A++LDGG+   D++FS  +Y       K W +  +H L+ ++P GDR+
Sbjct: 751  HALANAFEAVVAAVYLDGGLGACDRLFSKAMYGSAPNLKKVWDHINEHELKREDPLGDRE 810

Query: 956  WVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQL 1015
                +P L     LE    + FN+IRLLA+ FT R++ + +LT G NQRLE+LGD+VLQL
Sbjct: 811  LSNITPALASFHKLENILNIKFNNIRLLAKAFTRRNVPHNDLTKGHNQRLEWLGDSVLQL 870

Query: 1016 ITSDYLY 1022
            + SDYL+
Sbjct: 871  VVSDYLF 877



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 78/150 (52%), Gaps = 18/150 (12%)

Query: 781 RQPEYGDRRIHFQNTRKRGINTLINIMS------KLGRKVATESNI-------THNERLE 827
           R+   GDR +          + L NI++      +L  K  T  N+        HN+RLE
Sbjct: 802 REDPLGDRELSNITPALASFHKLENILNIKFNNIRLLAKAFTRRNVPHNDLTKGHNQRLE 861

Query: 828 FLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY-AHGS 886
           +LGD+V++ + S +LF  +P   EG ++  R ++V NQ  + +   +G  +F++   H +
Sbjct: 862 WLGDSVLQLVVSDYLFRRYPLHHEGHMSLLRTSLVSNQTQSVVCDDLGFLEFVVKPPHKT 921

Query: 887 DLCHEVELKHAMANCFEALMGALFLDGGID 916
               E+++K   A+  EA +GAL++D GI+
Sbjct: 922 P---ELKMKDK-ADLVEAFIGALYVDRGIE 947


>gi|268564825|ref|XP_002639240.1| C. briggsae CBR-DRSH-1 protein [Caenorhabditis briggsae]
 gi|74847096|sp|Q61XX9.1|RNC_CAEBR RecName: Full=Ribonuclease 3; AltName: Full=Protein drosha; AltName:
            Full=Ribonuclease III; Short=RNase III
          Length = 1061

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 252/689 (36%), Positives = 378/689 (54%), Gaps = 40/689 (5%)

Query: 350  ESSSDSSSGEEDAEEDNWM--MELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRR 407
            + +  S +  E+ E  N +  M ++ K+NHP+ + P + +N+KG  ND P CRC    R 
Sbjct: 203  QKADSSQTKVEEKERQNTLLRMGIERKRNHPNAIDPHISYNEKGLGNDSPECRCPFPIRN 262

Query: 408  SGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGF 467
             G++H  YAGE++   C+   N+   L++Y + V+P  N    + T +  +  E+ FEGF
Sbjct: 263  RGLKHGYYAGENQVLKCS--KNDRANLHYYTLHVTPAPNESQIQKTQMLINGMEYHFEGF 320

Query: 468  SLFSHHPLEKLPTC----KVIRFNIQYTIVYIEEKVPNG-FTVKDTELFFNYLFHEILEL 522
            ++ +H PL   P C     V +++I Y    IEE +P   F  +D    F Y+FH+I EL
Sbjct: 321  TMVTHAPL---PDCMTRRPVFKYSIDYEFQLIEEFMPTECFDPEDCNSIFEYIFHDIFEL 377

Query: 523  VDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKELLPMYRVLEFF-----TSSFVPVI 574
            +D DL   +   G   CP  HI+PRFV  +++N   +     VL FF      + F P  
Sbjct: 378  LDFDLYPKHLPPGTASCPTIHIVPRFV-AMENNTTFIWSSKTVLAFFLLHGKNNMFSPED 436

Query: 575  SEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDIYPDAVHFG 634
             EK     DD     +      +K  I++ P  KP A+R D   R+ E  +++   +   
Sbjct: 437  VEKNCAMSDD----AFGRTIAKLKQSIVLNPMKKPSALRADWFSRDLENKEMF--LIQNT 490

Query: 635  SRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKR 694
             R         P    L K   +L+     + K +          +  L  ++   +  R
Sbjct: 491  IRSQNFASPFLPQIAALEKKMSRLKQ----EKKDSGNKNPHYENLKAELIVLKDKHREAR 546

Query: 695  GVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLA 754
             + + +  + +  TG+  D+V H  +  +   H+R++ SL+V E  I+YKF +R +++LA
Sbjct: 547  QLKLKLPVKDYIDTGLKPDVVAHVAMAIIASHHIRYNFSLSVFEKVIEYKFNDRRIVELA 606

Query: 755  LTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKV 814
            L H S+R  +GT PDH +N +SNCG R+ +YG      +  +K+GI +L NIM   G + 
Sbjct: 607  LIHSSFRSYYGTTPDHVKNMISNCGYRK-KYGAEE---RREKKKGIISLFNIM---GGET 659

Query: 815  ATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI 874
            +    I HNERLE+LGDAVVE I S HLF +     EGGLATYR A+VQN++LA LA   
Sbjct: 660  SGGEPILHNERLEYLGDAVVELIASHHLFFILNHHFEGGLATYRTALVQNRNLAKLAMNC 719

Query: 875  GLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVR 933
             +++ + +AHG+DL +E E KHA+AN FEALM  +FLD GI   D +FS  +Y KD E++
Sbjct: 720  RIDEMLQFAHGADLINEAEWKHALANAFEALMAGVFLDSGIAPCDAIFSKAMYGKDPEMK 779

Query: 934  FKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMG 993
             K W +  +H L+ ++P GDR     +P L     LE   G+ FN+IRLLA+ FT R++ 
Sbjct: 780  -KVWDHLNEHELKIEDPLGDRDLSRITPALTDFHRLEQIIGIEFNNIRLLAKAFTRRNVP 838

Query: 994  YTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            + +LT G NQRLE+LGD+VLQLI SDYLY
Sbjct: 839  FNDLTKGHNQRLEWLGDSVLQLIISDYLY 867



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 69/128 (53%), Gaps = 15/128 (11%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HN+RLE+LGD+V++ I S +L+  FP   EG ++  R ++V NQ  + +   +G ++F++
Sbjct: 846 HNQRLEWLGDSVLQLIISDYLYRNFPLHHEGHMSLLRTSLVSNQTQSVVCDDLGFQEFVI 905

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL------------YKD 929
            A      +++++K   A+  EA +GAL++D G++       +V             + D
Sbjct: 906 KAPHRK--NDLKMKDK-ADLVEAFIGALYVDKGLEYCRSFIRTVFCPRLKHFINSEKWND 962

Query: 930 NEVRFKQW 937
            +   +QW
Sbjct: 963 AKSHLQQW 970


>gi|317420155|emb|CBN82191.1| Ribonuclease 3 [Dicentrarchus labrax]
          Length = 1569

 Score =  361 bits (927), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 168/271 (61%), Positives = 213/271 (78%)

Query: 648  FQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYR 707
            +QKLWK YVKLRHL+AN PK    DK++L  +E+ LQ++R  + M+R VTV +SS+GF++
Sbjct: 850  YQKLWKSYVKLRHLLANSPKVKQIDKQKLTQREEALQKIRQKNTMRREVTVELSSQGFWK 909

Query: 708  TGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTN 767
            TGI  D+ QHAM++PVL  H+R+H+ L  L+  I Y F+ R LLQLA+THPS+  NFG N
Sbjct: 910  TGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYVFKERCLLQLAMTHPSHHLNFGMN 969

Query: 768  PDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLE 827
            PDHARNSLSNCG+RQP+YGDR++H    RK+GINTLINIMS+LG+   + S I HNERLE
Sbjct: 970  PDHARNSLSNCGIRQPKYGDRKVHHMYMRKKGINTLINIMSRLGQDDPSPSRINHNERLE 1029

Query: 828  FLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSD 887
            FLGDAVVEF+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG D
Sbjct: 1030 FLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPD 1089

Query: 888  LCHEVELKHAMANCFEALMGALFLDGGIDVA 918
            LC E +L+HAMANCFEAL+    L     +A
Sbjct: 1090 LCRESDLRHAMANCFEALIEHFLLTRQTQIA 1120



 Score =  312 bits (800), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 172/413 (41%), Positives = 233/413 (56%), Gaps = 50/413 (12%)

Query: 266 WTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVI-QNFVSVKESKPQFDYTAN 320
           W R   A+ YY+     +  D +   T K R + + FE  + +     K+++P++D    
Sbjct: 352 WIRCTHAENYYSNDPMDQVGDSTVVGTSKLRDLYERFEEELGRRQERAKDARPKWD---- 407

Query: 321 RKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDR 380
                     K K       S+      S+    + S   D+E  + + E++ K+ HPDR
Sbjct: 408 --------PPKTKLDEDPDDSSSESDCESDGEGSTCSSSSDSEVFDVIAEIKRKKAHPDR 459

Query: 381 LHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAF----------------- 423
           LH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+                     
Sbjct: 460 LHEELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEESIGINEGHGLLNECVFFMEVN 519

Query: 424 -----------CNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSH 472
                      C P  NNA K +HYR+TVSPPTNFL ++PTVIE+D+ E++FEGFSLFSH
Sbjct: 520 SVPRLMLSVKQCRPMNNNAGKQFHYRITVSPPTNFLTDRPTVIEYDDHEYLFEGFSLFSH 579

Query: 473 HPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSA-- 530
            PL  +P C+VIRFNI YTI +IEE  P  + V+  ELF  YLF +ILEL D +L     
Sbjct: 580 TPLTNIPLCRVIRFNIDYTIHFIEEMTPENYCVRGLELFAAYLFKDILELYDWNLTGPEF 639

Query: 531 -NNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYE 589
            N+  GC QFH MPRFVR L D GKE+L M++VL +   S  P++ E+           E
Sbjct: 640 DNDSPGCQQFHFMPRFVRFLPDGGKEVLSMHQVLLYLLRSSKPLVPEEEIADMLQWEELE 699

Query: 590 WQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQL 640
           WQ +A+  KGMI+  PG KP ++R+DQLDRE    D+  +P  VHFG RP QL
Sbjct: 700 WQKYAEECKGMIVTNPGMKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQL 752



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 68/86 (79%)

Query: 937  WMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN 996
            W+ +P HPLQ QEP  DRQ +E SP+L++L   E S GV+F H+RLLAR FT R++G+ +
Sbjct: 1331 WLNFPPHPLQVQEPQTDRQLIETSPVLQKLTSFEDSIGVLFTHVRLLARAFTLRTVGFNH 1390

Query: 997  LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1391 LTLGHNQRMEFLGDSIMQLVATEYLF 1416



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 819  NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
             + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++D
Sbjct: 1392 TLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQD 1451

Query: 879  FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            F +    +     +  K  +A+  E+ + AL++D  ++
Sbjct: 1452 FAITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLE 1488


>gi|407262157|ref|XP_001473806.3| PREDICTED: ribonuclease 3-like [Mus musculus]
          Length = 1337

 Score =  359 bits (921), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 170/309 (55%), Positives = 230/309 (74%), Gaps = 4/309 (1%)

Query: 717  HAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLS 776
            HAM++PVL  H+R+H+ L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLS
Sbjct: 819  HAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLS 878

Query: 777  NCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEF 836
            NCG+RQP+YGDR++H  + RK+GINTLINIMS+LG+   T S I HNERLEFLGDAVVEF
Sbjct: 879  NCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEF 938

Query: 837  ITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKH 896
            +TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK    ++ +   H       V L  
Sbjct: 939  LTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKVSLADNAVPDLHALSEMEVVSLPQ 998

Query: 897  AMANCFEALM---GALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGD 953
             +      ++   GA++L+G ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ D
Sbjct: 999  GVLERVTLVLQHPGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTD 1057

Query: 954  RQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVL 1013
            RQ +E SP+L++L   E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++
Sbjct: 1058 RQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIM 1117

Query: 1014 QLITSDYLY 1022
            QL+ ++YL+
Sbjct: 1118 QLVATEYLF 1126



 Score =  251 bits (641), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 132/291 (45%), Positives = 178/291 (61%), Gaps = 20/291 (6%)

Query: 266 WTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYTANR 321
           W R   ++ YY+     +  D +   T + R + D+FE  + N                +
Sbjct: 411 WIRCTHSESYYSSDPMDQVGDSTVVGTSRLRDLYDKFEEELGN-------------RQEK 457

Query: 322 KKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRL 381
            K  R   +  K K      + + S        + S   D+E  + + E++ K+ HPDRL
Sbjct: 458 AKAARPPWEPPKTKLDEDLESSSESECETDDDSTCSSSSDSEVFDVIAEIKRKKAHPDRL 517

Query: 382 HPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTV 441
           H ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR+TV
Sbjct: 518 HDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYRITV 577

Query: 442 SPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPN 501
           SPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE +P 
Sbjct: 578 SPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPE 637

Query: 502 GFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPRFVREL 549
            F VK  ELF  +LF +ILEL D +LK    +D    CP+FH MPRFVR L
Sbjct: 638 NFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFL 688



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 64/109 (58%), Gaps = 2/109 (1%)

Query: 819  NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
             + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G+++
Sbjct: 1102 TLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE 1161

Query: 879  FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            + +    +     +  K  +A+  E+ + AL++D  ++     F +V +
Sbjct: 1162 YAITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1208


>gi|341898331|gb|EGT54266.1| hypothetical protein CAEBREN_32072 [Caenorhabditis brenneri]
          Length = 829

 Score =  351 bits (901), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 216/589 (36%), Positives = 331/589 (56%), Gaps = 36/589 (6%)

Query: 443  PPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIR----FNIQYTIVYIEEK 498
            P + F+  +PTV+          GFSL +H PL   P C   R    + + Y    +EEK
Sbjct: 61   PRSIFVDLEPTVV----------GFSLVTHAPL---PICMTRRPICMYAMDYEFQLVEEK 107

Query: 499  VPN-GFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGK 554
            VP+  F  +D +    Y+FHEI E+++  L+  +   G   CP  HIMPRF    KD   
Sbjct: 108  VPDECFAPEDCDDLQEYIFHEIFEMMNFQLRPKHVPAGIETCPMIHIMPRF-ECFKDGLV 166

Query: 555  ELLPMYRVLEFFTS-SFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMR 613
             L     VL +F S   +P+  ++   S   L+  E+      +K  II+    KP A+R
Sbjct: 167  HLWSSKTVLAYFLSKGGIPLFDKEEVSSHSRLNDEEFTRNTGRLKQSIILNTQFKPSAVR 226

Query: 614  VDQLDRESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDK 673
             D  +R++E  ++Y   VH   R        +    KL     KL++   +K        
Sbjct: 227  ADWFERDAEKREVY--FVHNAIRSASYPIGIAARIAKLENTLNKLKN---DKRNSYGMPN 281

Query: 674  RRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRS 733
                A +  + +++  ++  R + +     G+  TG+  D+V H  ++ +   H+R++ S
Sbjct: 282  PEYEATKLEMDKLKEEARAARILKLREPVAGYIDTGLKPDVVAHIAMVTIACHHIRYNFS 341

Query: 734  LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
            ++V E+ IQY+F +R L++LA  H S+R ++GT  DH +N ++NCG R+ +YG      +
Sbjct: 342  ISVFEEIIQYQFNDRRLIELAFIHSSFRTSYGTPIDHVKNIVNNCGYRR-KYGTEE---K 397

Query: 794  NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
              +K+GI +L NIM   G ++  E  I HNERLE+LGDAVVE ITS HLF + P   EGG
Sbjct: 398  REKKKGIVSLFNIM---GGEIDGEP-ILHNERLEYLGDAVVELITSHHLFFMLPHHFEGG 453

Query: 854  LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
            LATYR A+VQN++LA LAK   +++ + +AHG+DL +E + KHA+AN FEA+M A++LDG
Sbjct: 454  LATYRTALVQNRNLAKLAKSCRMDEMLQFAHGADLINEADFKHALANSFEAVMAAVYLDG 513

Query: 914  GIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSS 973
            G+   D +FS  +Y  +    + W +  +H L+ ++P GDR+  + +P L     LE   
Sbjct: 514  GLGPCDTIFSKAMYGSDPELKQIWDHCNEHELRREDPLGDRELSQITPALASFHELERRL 573

Query: 974  GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            G+ FN+IRLLA+ FT R++   +LT G NQRLE+LGD+VLQL+ SD+LY
Sbjct: 574  GIQFNNIRLLAKAFTRRNVPNNDLTKGHNQRLEWLGDSVLQLLISDFLY 622



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 11/127 (8%)

Query: 796 RKRGI--NTLINIMSKLGRKVATESNIT--HNERLEFLGDAVVEFITSIHLFHVFPDIEE 851
           R+ GI  N +  +     R+    +++T  HN+RLE+LGD+V++ + S  L+  FP+  E
Sbjct: 571 RRLGIQFNNIRLLAKAFTRRNVPNNDLTKGHNQRLEWLGDSVLQLLISDFLYKNFPNHHE 630

Query: 852 GGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEV-ELK-HAMANCFEALMGAL 909
           G ++  R ++V NQ  + +   +G  +F++        H V ELK    A+  EA +GAL
Sbjct: 631 GHMSLLRTSLVSNQTQSVVCDDLGFLEFVIKP-----PHRVPELKVKDKADLVEAFIGAL 685

Query: 910 FLDGGID 916
           ++D GI+
Sbjct: 686 YVDSGIE 692


>gi|119631175|gb|EAX10770.1| ribonuclease III, nuclear, isoform CRA_c [Homo sapiens]
          Length = 798

 Score =  342 bits (878), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 186/466 (39%), Positives = 266/466 (57%), Gaps = 53/466 (11%)

Query: 230 DKWRMNNCSSEREMTEKFNTLAAMEADQIIEEE---------KKIWTRSAPADLYYTK-- 278
           D+W  N  S +    + + ++   E ++ + ++         K +W R   ++ YY+   
Sbjct: 370 DRWSDNQSSGK---DKNYTSIKEKEPEETMPDKNEEEEEELLKPVWIRCTHSENYYSSDP 426

Query: 279 --RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKC 336
             +  D +   T + R + D+FE              +      + K  R   +  K K 
Sbjct: 427 MDQVGDSTVVGTSRLRDLYDKFEE-------------ELGSRQEKAKAARPPWEPPKTKL 473

Query: 337 SHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDG 396
                + + S        + S   D+E  + + E++ K+ HPDRLH ELW+ND G+MNDG
Sbjct: 474 DEDLESSSESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDG 533

Query: 397 PLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIE 456
           PLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR+TVSPPTNFL ++PTVIE
Sbjct: 534 PLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIE 593

Query: 457 HDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLF 516
           +D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE +P  F VK  ELF  +LF
Sbjct: 594 YDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLF 653

Query: 517 HEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISE 576
            +ILEL D +                      LKD GKE+L M+++L +       ++ E
Sbjct: 654 RDILELYDWN----------------------LKDGGKEVLSMHQILLYLLRCSKALVPE 691

Query: 577 KLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDAVHFG 634
           +   +       EWQ +A+  KGMI+  PG+KP ++R+DQLDRE    D+  +P  VHFG
Sbjct: 692 EEIANMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIVHFG 751

Query: 635 SRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKE 680
            RP QL +AG P +QKLWK YVKLRHL+AN PK    DK++LA +E
Sbjct: 752 IRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQRE 797


>gi|349603719|gb|AEP99482.1| Ribonuclease 3-like protein, partial [Equus caballus]
          Length = 449

 Score =  324 bits (830), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 145/239 (60%), Positives = 196/239 (82%), Gaps = 1/239 (0%)

Query: 784  EYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLF 843
            +YGDR++H  + RK+GINTLINIMS+LG+   T S + HNERLEFLGDAVVEF+TS+HL+
Sbjct: 1    KYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRLIHNERLEFLGDAVVEFLTSVHLY 60

Query: 844  HVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFE 903
            ++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFE
Sbjct: 61   YLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFE 120

Query: 904  ALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLL 963
            AL+GA++L+G ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L
Sbjct: 121  ALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVL 179

Query: 964  KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            ++L   E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 180  QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 238



 Score = 60.1 bits (144), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G+++
Sbjct: 214 TLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE 273

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
           + +    +     +  K  +A+  E+ + AL++D  ++
Sbjct: 274 YAITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLE 310


>gi|341891390|gb|EGT47325.1| hypothetical protein CAEBREN_31838, partial [Caenorhabditis brenneri]
          Length = 704

 Score =  323 bits (827), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 196/532 (36%), Positives = 301/532 (56%), Gaps = 24/532 (4%)

Query: 503  FTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKELLPM 559
            F  +D +    Y+FHEI E+++  L+  +   G   CP  HIMPRF    KD    L   
Sbjct: 2    FAPEDCDDLQEYIFHEIFEMMNFQLRPKHVPAGIETCPMIHIMPRF-ECFKDGLVHLWSS 60

Query: 560  YRVLEFFTS-SFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLD 618
              VL +F S    P+  ++   S   L+  E+      +K  II+    KP A+R D  +
Sbjct: 61   KTVLAYFLSKGGSPLFDKEEVSSHSRLNDEEFTRNTGRLKQSIILNTQFKPSAVRADWFE 120

Query: 619  RESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAA 678
            R+++  ++Y   VH   R        +    KL     KL++    K            A
Sbjct: 121  RDADKREVY--FVHNAIRSASYPIGIAARIAKLENTLNKLKN---EKRNSYGMPNPEYEA 175

Query: 679  KEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLE 738
             +  + +++  ++  R + +     G+  TG+  D+V H  ++ +   H+R++ S++V E
Sbjct: 176  TKLEMDKLKEEARAARILKLREPVAGYIDTGLKPDVVAHIAMVTIACHHIRYNFSISVFE 235

Query: 739  DRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYG-------DRRIH 791
            + IQY+F +R L++LA  H S+R ++GT  DH +N ++NCG R+ +YG        + + 
Sbjct: 236  EIIQYQFNDRRLIELAFIHSSFRTSYGTPIDHVKNIVNNCGYRR-KYGTEEKREKKKVLK 294

Query: 792  FQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEE 851
                +  GI +L NIM   G ++  E  I HNERLE+LGDAVVE ITS HLF + P   E
Sbjct: 295  ITPQQVAGIVSLFNIM---GGEIDGEP-ILHNERLEYLGDAVVELITSHHLFFMLPHHFE 350

Query: 852  GGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFL 911
            GGLATYR A+VQN++LA LAK   +++ + +AHG+DL +E + KHA+AN FEA+M A++L
Sbjct: 351  GGLATYRTALVQNRNLAKLAKSCRMDEMLQFAHGADLINEADFKHALANSFEAVMAAVYL 410

Query: 912  DGGIDVADQVFSSVLYKDNEVRFKQ-WMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLE 970
            DGG+   D +FS  +Y +N+   KQ W +  +H L+ ++P GDR+  + +P L     LE
Sbjct: 411  DGGLGPCDIIFSKAMY-ENDPELKQIWDHCNEHELKREDPLGDRELSQITPALASFHELE 469

Query: 971  YSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
               G+ FN+IRLLA+ FT R++   +LT G NQRLE+LGD+VLQL+ SD+LY
Sbjct: 470  RRLGIQFNNIRLLAKAFTRRNVPNNDLTKGHNQRLEWLGDSVLQLLISDFLY 521



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 11/127 (8%)

Query: 796 RKRGI--NTLINIMSKLGRKVATESNIT--HNERLEFLGDAVVEFITSIHLFHVFPDIEE 851
           R+ GI  N +  +     R+    +++T  HN+RLE+LGD+V++ + S  L+  FP+  E
Sbjct: 470 RRLGIQFNNIRLLAKAFTRRNVPNNDLTKGHNQRLEWLGDSVLQLLISDFLYKNFPNHHE 529

Query: 852 GGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEV-ELK-HAMANCFEALMGAL 909
           G ++  R ++V NQ  + +   +G  +F++        H V ELK    A+  EA +GAL
Sbjct: 530 GHMSLLRTSLVSNQTQSVVCDDLGFLEFVIKP-----PHRVPELKVKDKADLVEAFIGAL 584

Query: 910 FLDGGID 916
           ++D GI+
Sbjct: 585 YVDSGIE 591


>gi|444725571|gb|ELW66134.1| Ribonuclease 3 [Tupaia chinensis]
          Length = 1199

 Score =  307 bits (787), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 188/514 (36%), Positives = 271/514 (52%), Gaps = 72/514 (14%)

Query: 185 RRSRSKSRSESKSRSEVPRQACARRSRSRSRILSPKRSGEALSNLDKWRMNNCSSEREMT 244
           RRS S  RS  K           +RS SRS     KR+       D+W  N  S + +  
Sbjct: 289 RRSPSLERSYKKE---------YKRSGSRSPSREKKRA-RWEEEKDRWSDNQSSGKEK-- 336

Query: 245 EKFNTLAAMEADQIIEEE---------KKIWTRSAPADLYYTK----RTEDDSYECTQKT 291
             + ++   E ++ + ++         K +W R   ++ YY+     +  D +   T + 
Sbjct: 337 -NYTSIKEKEPEETLTDKNEEEEEELLKPVWIRCTHSENYYSSDPMDQVGDSTVVGTSRL 395

Query: 292 RTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSES 351
           R + D+FE              +      + K  R   +  K K      + + S     
Sbjct: 396 RDLYDKFEE-------------ELGSRQEKAKAARPPWEPPKTKLDEDLESSSESECESD 442

Query: 352 SSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIR 411
              + S   D+E  + + E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIR
Sbjct: 443 EDSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIR 502

Query: 412 HNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFS 471
           H+IY GE+    C P TNNA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+
Sbjct: 503 HSIYPGEENIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFA 562

Query: 472 HHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSAN 531
           H PL                         N F VK  ELF  +LF +ILEL D +LK+  
Sbjct: 563 HAPLT------------------------NNFCVKGLELFSLFLFRDILELYDWNLKA-- 596

Query: 532 NKDGCPQF---HIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTY 588
             D  P     + +P      +D GKE+L M+++L +       ++ E+   +       
Sbjct: 597 --DDLPIIKYPYFVPSLCNPTQDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEEL 654

Query: 589 EWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSP 646
           EWQ +A+  KGMI+  PG+KP ++R+DQLDRE    D+  +P  VHFG RP QL +AG P
Sbjct: 655 EWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDP 714

Query: 647 DFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKE 680
            +QKLWK YVKLRHL+AN PK    DK++LA +E
Sbjct: 715 QYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQRE 748



 Score =  277 bits (708), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 140/273 (51%), Positives = 188/273 (68%), Gaps = 34/273 (12%)

Query: 752  QLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLG 811
            +LA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  + RK+GINTLINIMS+LG
Sbjct: 748  ELAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLG 807

Query: 812  RKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLA 871
            +   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGGLATYR AIVQNQHLA LA
Sbjct: 808  QDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLA 867

Query: 872  K--RIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 929
            K  RI  E F++  H   L   +E                  +GG+      + + + ++
Sbjct: 868  KVYRIS-EAFVVNVHLYYLFPSLE------------------EGGL----ATYRTAIVQN 904

Query: 930  NEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTT 989
              +     +         QEP+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT 
Sbjct: 905  QHLAMLAKL---------QEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTL 955

Query: 990  RSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 956  RTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 988



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 60/97 (61%), Gaps = 1/97 (1%)

Query: 820  ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G++++
Sbjct: 965  LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1024

Query: 880  MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
             +    +     +  K  +A+  E+ + AL++D  ++
Sbjct: 1025 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLE 1060


>gi|313224789|emb|CBY20581.1| unnamed protein product [Oikopleura dioica]
          Length = 538

 Score =  269 bits (687), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 125/268 (46%), Positives = 183/268 (68%), Gaps = 1/268 (0%)

Query: 755  LTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKV 814
            +THPS   N+G NPDH RNS +NCG+R+P YG+        RKRGI TLI +M+ LG   
Sbjct: 1    MTHPSAVYNYGENPDHVRNSTTNCGIRKPIYGEEGPSRPYERKRGIVTLIKVMALLGTSE 60

Query: 815  ATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI 874
              ES I + ER EFLGDAV+ F+ S+ +FH+FP++ EG L+  R A+V N HLA LA+++
Sbjct: 61   PKESPINYLERPEFLGDAVLGFVVSVSIFHLFPNLGEGALSMLRCALVCNVHLAALAQKL 120

Query: 875  GLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRF 934
             LED+ +Y H  DL    +L +A+ANCFEA++GA+++DGG++   Q+ + VL+ D  ++ 
Sbjct: 121  TLEDYFVYIHSQDLAKREDLNNALANCFEAVLGAIYMDGGLEPVRQLLARVLFDDKALQ- 179

Query: 935  KQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGY 994
            + W+ +P HPLQ++ PDGDR  +E S +LK+   LE   GV F +IRLLA+  T +++ Y
Sbjct: 180  RVWLDFPAHPLQQEYPDGDRAQIESSKVLKRCAELEELLGVKFKNIRLLAKALTLKNVKY 239

Query: 995  TNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
             ++T G NQRLEFLGD +   + ++YL+
Sbjct: 240  NDITKGHNQRLEFLGDAICNFLAAEYLF 267



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 4/127 (3%)

Query: 804 INIMSK-LGRKVATESNIT--HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAA 860
           I +++K L  K    ++IT  HN+RLEFLGDA+  F+ + +LF  FP   EG L   R  
Sbjct: 225 IRLLAKALTLKNVKYNDITKGHNQRLEFLGDAICNFLAAEYLFKHFPLHHEGHLTLLRCT 284

Query: 861 IVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ 920
           +V     A +A++IGL+ F++             +  +A+  E+ +GALF+D GI +A  
Sbjct: 285 MVGAPTQALVAQQIGLDKFVISRQSLSHDKMGWKQKILADLMESFIGALFIDRGI-IAVD 343

Query: 921 VFSSVLY 927
           VF  V +
Sbjct: 344 VFMKVAF 350


>gi|390358795|ref|XP_001185802.2| PREDICTED: ribonuclease 3-like, partial [Strongylocentrotus
            purpuratus]
          Length = 707

 Score =  259 bits (661), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 150/421 (35%), Positives = 230/421 (54%), Gaps = 75/421 (17%)

Query: 647  DFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFY 706
            +++KL K + +LRHL+ NKP+ T  DK +LA KE +LQ +R                   
Sbjct: 86   NYRKLLKSFTRLRHLLLNKPRVTEADKEKLAEKEAKLQRIR------------------- 126

Query: 707  RTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGT 766
                      HA+++PVL+ HLR+   LN L   + YKFQ+  LL+ A+THPSY+  FGT
Sbjct: 127  ----------HALMLPVLVNHLRYFACLNSLYQVLGYKFQDPMLLRFAMTHPSYKLYFGT 176

Query: 767  NPDHARNSLSNCGVR-QPEYGDRRIHFQNTRKRG-INTL--------------------- 803
             PDH RNSL NCG+R + ++ + +      RK+G +N L                     
Sbjct: 177  TPDHVRNSLYNCGIRCRQDHTEHKKVLAKERKKGSLNFLKLCKIKYFNFNLIHSIQRNFM 236

Query: 804  -------------INIMSKLGRKVATESNITHNERLEFLGDAVVEFITS---IHLFHVFP 847
                          +I SKL    A    + ++ R++      +  + +   +H    F 
Sbjct: 237  AQTGDPTGTGKGGASIFSKLYGDQAKYFEMENSPRIKHRKKGALSMVNNGENMHGSQFFL 296

Query: 848  DIEEG-----GLATYRAAIVQN-QHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 901
             + E      G  T    + +    L  + +++ L+ +MLYAHG DLC   +L+HAMANC
Sbjct: 297  TLAEDLDYLDGQHTVFGEVTEGFDVLDKINEKLELDKYMLYAHGPDLCRPYDLRHAMANC 356

Query: 902  FEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSP 961
             EA+MGA++L+ G+D+  ++F  +L+++  ++   W+ +P+ PLQ + P+ DR  ++ S 
Sbjct: 357  LEAVMGAIYLEAGLDLCRKIFGKLLFEEEYLQ-TIWLNHPKDPLQVRSPETDRHLIKNSE 415

Query: 962  LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 1021
            +L++L   E  +G+ F HIRLLAR FT R++GYTNLT+GSNQRLEFLGD+VLQL+ S YL
Sbjct: 416  VLQKLTVFEGDTGMRFTHIRLLARAFTQRTVGYTNLTMGSNQRLEFLGDSVLQLVVSSYL 475

Query: 1022 Y 1022
            Y
Sbjct: 476  Y 476



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 14/188 (7%)

Query: 745 FQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEY---GDRRIHFQNTRKRGIN 801
           F+  YL  + L HP        +P+  R+ + N  V Q      GD  + F + R     
Sbjct: 382 FEEEYLQTIWLNHPKDPLQV-RSPETDRHLIKNSEVLQKLTVFEGDTGMRFTHIRL---- 436

Query: 802 TLINIMSKLGRKVATESNIT--HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRA 859
               +     ++    +N+T   N+RLEFLGD+V++ + S +L+  FP+  EG L+  R+
Sbjct: 437 ----LARAFTQRTVGYTNLTMGSNQRLEFLGDSVLQLVVSSYLYKHFPNHHEGHLSLLRS 492

Query: 860 AIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVAD 919
           ++V N+  + +A+ +GL ++++                MA+  EAL+GA+++D G++V  
Sbjct: 493 SLVNNKTQSIIAQDLGLVEYIIEPKTRSRNENNIPMKIMADLVEALIGAMYVDHGLEVVS 552

Query: 920 QVFSSVLY 927
              S V Y
Sbjct: 553 TFCSVVFY 560


>gi|148671306|gb|EDL03253.1| mCG8947 [Mus musculus]
          Length = 766

 Score =  250 bits (638), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 117/216 (54%), Positives = 154/216 (71%), Gaps = 8/216 (3%)

Query: 368 MMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPD 427
           + E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P 
Sbjct: 504 IAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPM 563

Query: 428 TNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFN 487
           TNNA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFN
Sbjct: 564 TNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFN 623

Query: 488 IQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPR 544
           I YTI +IEE +P  F VK  ELF  +LF +ILEL D +LK    +D    CP+FH MPR
Sbjct: 624 IDYTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPR 683

Query: 545 FVR----ELKDNGKELLPMYRVLEFFTSSFVPVISE 576
           FVR     L ++     P +  +  F   F+P  ++
Sbjct: 684 FVRFLPGPLFEDSPPCCPRFHFMPRFV-RFLPACND 718


>gi|313224788|emb|CBY20580.1| unnamed protein product [Oikopleura dioica]
          Length = 845

 Score =  248 bits (634), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 137/375 (36%), Positives = 197/375 (52%), Gaps = 21/375 (5%)

Query: 375 QNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKL 434
           +NHPDR+  ELW+N+    NDGPLC+C    ++ GI H IY  E +        NN DKL
Sbjct: 463 KNHPDRMCAELWYNEPKMANDGPLCKCEM-DQQHGINHGIYPQEVQPPALPAKNNNLDKL 521

Query: 435 YHYRVTVSPPTNFLINK--PTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTI 492
           +HYR+TVSP  NF       T I +  + + F GFS+ SH  L K+PT  V R++  + I
Sbjct: 522 FHYRITVSPMKNFAFKDHITTKINYLEKCYRFAGFSILSHRDLSKVPTIPVTRYHNDHAI 581

Query: 493 VYIEEKVPNGFTVKDTELFFNYLFHEILELVDL------DLKSANNKDGCPQ------FH 540
             + E  P  F + D +LF ++ F + LEL D       D  S   + G         F+
Sbjct: 582 TLLPEPAPTSFCLADLDLFADFFFKDTLELYDWVNGLIPDAPSVKTELGEENSSSQKFFY 641

Query: 541 IMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGM 600
            +PRF      N  +LL M +++++F     P+I +   K   D     W+D+    +G 
Sbjct: 642 FLPRFESRGLSNELQLLGMDQIMQYFIGCDKPLIDQTDLKRLIDSDFDSWEDYIKTFRGQ 701

Query: 601 IIVKPGSKPCAMRVDQLDRESETNDI------YPDAVHFGSRPLQLCFAGSPDFQKLWKG 654
           ++  PG KP  +R+DQLDRE     +      +P  VHFG RP  L +AG P +QK+++ 
Sbjct: 702 LVTNPGKKPSTIRLDQLDREKTMTGVANQEHRWPIIVHFGVRPANLSYAGDPVYQKVYRT 761

Query: 655 YVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDM 714
           Y K RHL+ NKP+   +   ++   E  LQ+MR  + M+R VT  IS   F  TGI  DM
Sbjct: 762 YQKYRHLITNKPRIQEQHWSKIRDLEVLLQKMRRMADMQREVTNEISCENFRLTGIFPDM 821

Query: 715 VQHAMLIPVLICHLR 729
             HA L+PV+  H+R
Sbjct: 822 AAHAFLLPVVTHHIR 836


>gi|149027278|gb|EDL82945.1| ribonuclease III, nuclear [Rattus norvegicus]
          Length = 282

 Score =  247 bits (631), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/185 (61%), Positives = 143/185 (77%), Gaps = 3/185 (1%)

Query: 368 MMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPD 427
           + E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+    C P 
Sbjct: 79  IAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPM 138

Query: 428 TNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFN 487
           TNNA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL  +P CKVIRFN
Sbjct: 139 TNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFN 198

Query: 488 IQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPR 544
           I YTI +IEE +P  F VK  ELF  +LF +ILEL D +LK    +D    CP+FH MPR
Sbjct: 199 IDYTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPR 258

Query: 545 FVREL 549
           FVR L
Sbjct: 259 FVRFL 263


>gi|73696282|gb|AAZ80928.1| nuclear RNase III Drosha [Macaca mulatta]
          Length = 174

 Score =  232 bits (591), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 103/175 (58%), Positives = 141/175 (80%), Gaps = 1/175 (0%)

Query: 845  VFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEA 904
            +FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEA
Sbjct: 1    LFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEA 60

Query: 905  LMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLK 964
            L+GA++L+G ++ A Q+F  +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L+
Sbjct: 61   LIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQ 119

Query: 965  QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSD 1019
            +L   E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++
Sbjct: 120  KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATE 174


>gi|7499923|pir||T21419 hypothetical protein F26E4.13 - Caenorhabditis elegans
          Length = 412

 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 106/221 (47%), Positives = 146/221 (66%), Gaps = 4/221 (1%)

Query: 802  TLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAI 861
            +L NIM    +  +    I HNERLE+LGDAVVE I S HL+ +     EGGLATYR A+
Sbjct: 2    SLFNIM----KGTSGGEPILHNERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTAL 57

Query: 862  VQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
            VQN++LA LAK   +++ + Y+HG+DL +  E KHA+AN FEA+M A++LDGG+   D +
Sbjct: 58   VQNRNLATLAKNCRIDEMLQYSHGADLINVAEFKHALANAFEAVMAAIYLDGGLAPCDVI 117

Query: 922  FSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIR 981
            FS  +Y    V  ++W +  +H L+ ++P GDR     +P L     LE   G+ FN+IR
Sbjct: 118  FSKAMYGHQPVLKEKWDHINEHELKREDPQGDRDLSFITPTLSTFHALEERLGIQFNNIR 177

Query: 982  LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            LLA+ FT R++   +LT G NQRLE+LGD+VLQLI SD+LY
Sbjct: 178  LLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLY 218



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 16/142 (11%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HN+RLE+LGD+V++ I S  L+  FP   EG ++  R ++V NQ  A +   +G  +F++
Sbjct: 197 HNQRLEWLGDSVLQLIVSDFLYRRFPYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVI 256

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL------------YKD 929
            A       E++LK   A+  EA +GAL++D GI+        V             + D
Sbjct: 257 KAPYK--TPELKLKDK-ADLVEAFIGALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWND 313

Query: 930 NEVRFKQWMYYPQHPLQEQEPD 951
            +   +QW    + P    EPD
Sbjct: 314 AKSHLQQWCLAMRDP-SSSEPD 334


>gi|313218040|emb|CBY41378.1| unnamed protein product [Oikopleura dioica]
          Length = 755

 Score =  187 bits (475), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 104/295 (35%), Positives = 150/295 (50%), Gaps = 21/295 (7%)

Query: 375 QNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKL 434
           +NHPDR+  ELW+N+    NDGPLC+C    ++ GI H IY  E +        NN DKL
Sbjct: 462 KNHPDRMCAELWYNEPKMANDGPLCKCEM-DQQHGINHGIYPQEVQPPALPAKNNNLDKL 520

Query: 435 YHYRVTVSPPTNFLINK--PTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTI 492
           +HYR+TVSP  NF       T I +  + + F GFS+ SH  L K+PT  V R++  + I
Sbjct: 521 FHYRITVSPMKNFAFKDHITTKINYLEKCYRFAGFSILSHRDLSKVPTIPVTRYHNDHAI 580

Query: 493 VYIEEKVPNGFTVKDTELFFNYLFHEILELVDL------DLKSANNKDGCPQ------FH 540
             + E  P  F + D +LF ++ F + LEL D       D  S   + G         F+
Sbjct: 581 TLLPEPAPTSFCLADLDLFADFFFKDTLELYDWVNGLIPDAPSVKTELGEENSSSQKFFY 640

Query: 541 IMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGM 600
            +PRF      N  +LL M +++++F     P+I +   K   D     W+D+    +G 
Sbjct: 641 FLPRFESRGLSNELQLLGMDQIMQYFIGCDKPLIDQTDLKRLIDSDFDSWEDYIKTFRGQ 700

Query: 601 IIVKPGSKPCAMRVDQLDRESETNDI------YPDAVHFGSRPLQLCFAGSPDFQ 649
           ++  PG KP  +R+DQLDRE     +      +P  VHFG RP  L +AG P +Q
Sbjct: 701 LVTNPGKKPSTIRLDQLDREKTMTGVANQEHRWPIIVHFGVRPANLSYAGDPVYQ 755


>gi|449665469|ref|XP_002167020.2| PREDICTED: uncharacterized protein LOC100211674, partial [Hydra
           magnipapillata]
          Length = 709

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 168/286 (58%), Gaps = 16/286 (5%)

Query: 659 RHLVANKPKRTAE--DKRRLAAKE----------QRLQEMRTNSKMKRGVTVAISSRGFY 706
           R ++   P  +AE     R+A+KE          Q  +E    SK ++ V V + S+G+Y
Sbjct: 118 RWMITQFPTTSAEWIHNLRVASKENQELMLEIENQIEKENNVISKDQKWVDVRVDSKGYY 177

Query: 707 RTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGT 766
           +TG+  D+ QH   +P++  +L F  SL VLE +I+Y F+++ LL++ALTH S+ +    
Sbjct: 178 KTGLKWDVCQHTSYLPLVWNYLLFMASLPVLESKIKYSFKDKSLLKVALTHASFLDQSSM 237

Query: 767 NPDHARNSLSNCGVRQPEYGD-RRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNER 825
                 NSL N G ++P      R      +++GI    N+M+ L  K  T+S+  HNER
Sbjct: 238 TSTLC-NSLQNLGKKKPVVEKISRPQNLGFKRKGIVNFTNVMAFLFSKQETKSSCLHNER 296

Query: 826 LEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHG 885
           LEFLGDAV++++TS+HLF +FP+   G L+ +R+ +VQ +HL  +A ++ L DF+L  H 
Sbjct: 297 LEFLGDAVLDYLTSMHLFLMFPEKGPGKLSIFRSGLVQGEHLRTIANKLNLVDFLLVKHR 356

Query: 886 SDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
           S +     L + + N  EA++GA++LD G++ AD + +++ + D+E
Sbjct: 357 SQVLQ--NLGYFLGNAVEAVIGAVYLDAGLEKADSLITNLYFNDDE 400


>gi|5101768|emb|CAB45133.1| p241 protein [Homo sapiens]
          Length = 380

 Score =  169 bits (428), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 165/309 (53%), Gaps = 33/309 (10%)

Query: 183 KRRRSRSKSRSESKSRSEVPRQACARRSRSRSRI-LSPKRSGEAL---SNLDKWRMNNCS 238
           +R RS  + R +S+ RS+  R     R RS  R   SP R  +        D+W  N  S
Sbjct: 86  ERGRSPDRRRQDSRYRSDYDRGRTPSRHRSYERSSRSPSREKKRARWEEEKDRWSDNQSS 145

Query: 239 SEREMTEKFNTLAAMEADQIIEEE---------KKIWTRSAPADLYYTK----RTEDDSY 285
            +    + + ++   E ++ + ++         K +W R   ++ YY+     +  D + 
Sbjct: 146 GK---DKNYTSIKEKEPEETMPDKNEEEEEELLKPVWIRCTHSENYYSSDPMDQVGDSTV 202

Query: 286 ECTQKTRTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTV 345
             T + R + D+FE  + +                + K  R   +  K K      + + 
Sbjct: 203 VGTSRLRDLYDKFEEELGS-------------RQEKAKAARPPWEPPKTKLDEDLESSSE 249

Query: 346 SSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKS 405
           S        + S   D+E  + + E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+
Sbjct: 250 SECESDEDSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKA 309

Query: 406 RRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFE 465
           RR+GIRH+IY GE+    C P TNNA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFE
Sbjct: 310 RRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFE 369

Query: 466 GFSLFSHHP 474
           GFS+F+H P
Sbjct: 370 GFSMFAHAP 378


>gi|440804445|gb|ELR25322.1| ribonuclease III, putative [Acanthamoeba castellanii str. Neff]
          Length = 805

 Score =  164 bits (415), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 90/214 (42%), Positives = 134/214 (62%), Gaps = 7/214 (3%)

Query: 814  VATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKR 873
            V   S I HN+RLE+LGDAV+EFI S HLF   P  +EG L+ YR+ +V N+ LA+L +R
Sbjct: 433  VIQYSPIEHNQRLEYLGDAVLEFICSAHLFTQLPQHDEGPLSQYRSGLVNNRFLAYLTQR 492

Query: 874  IGLEDFMLYAHGSDLCHEVE--LKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
            + L++ + YA  ++L    +   ++ +A+ FEAL+GAL+LD G++   + F+  L+ ++E
Sbjct: 493  LHLDEQLCYADVAELTQGGKEGRRNMLADSFEALIGALYLDQGLEACREFFAGCLFSESE 552

Query: 932  VRFKQ-WMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTR 990
               ++ W+    HPLQE     DR  +E SP++K    LE  +G+ F HIRLL + FT  
Sbjct: 553  ADLRRMWLQPCAHPLQEGP--SDRHLIEASPIMKGYTKLEEQTGIEFKHIRLLVQAFTHS 610

Query: 991  SM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            S+      L LG++QRLEFLGD VLQ + +  LY
Sbjct: 611  SLTDDCDTLKLGTSQRLEFLGDAVLQYVVTACLY 644



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 65/106 (61%), Gaps = 4/106 (3%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           ++RLEFLGDAV++++ +  L+  +PD  EG L  YR A+V NQ L  + K +G   F+ Y
Sbjct: 624 SQRLEFLGDAVLQYVVTACLYAHYPDQNEGQLTQYRVALVNNQVLGRIGKDLGFGPFIRY 683

Query: 883 AHGSDLCHEVELKHAM-ANCFEALMGALFLDGGIDVADQVFSSVLY 927
              +    +  +  +M A+C EA +GALFL+ G++V  + F  V++
Sbjct: 684 LPSTK--EQTGVTDSMIADCVEAFIGALFLEKGLEVV-EAFVRVVF 726


>gi|449665471|ref|XP_002161008.2| PREDICTED: uncharacterized protein LOC100207270 [Hydra
           magnipapillata]
          Length = 770

 Score =  155 bits (393), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 127/228 (55%), Gaps = 13/228 (5%)

Query: 398 LCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEH 457
           +C C+ + ++ GI HN++ G+     C+P +NN   LYHYR+ + P  NF   +PT I +
Sbjct: 490 VCSCNDQEKKRGIHHNVFQGKKVIPLCHPYSNNRTSLYHYRLEIFPDINFKTKEPTTIYY 549

Query: 458 DNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYI-EEKVPNGFTVKDTELFFNYLF 516
           + + F FEGFSLFSH  ++  P    ++ NI YT+ +I EE  P GF +KD +L  +Y F
Sbjct: 550 NKKRFYFEGFSLFSHELIDHTPDYTFLQNNINYTVSFIKEEYFPEGFCIKDVDLICDYYF 609

Query: 517 HEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGK-------ELLPMYRVLEFFTSS 569
           H+I EL D ++K ++    C  FH MPRFVR ++D  +       ++L M  +++    S
Sbjct: 610 HDIFELYDWNIKGSST--SCRPFHFMPRFVRVVEDLSRDKPKEIFQILSMSVIIKHLIKS 667

Query: 570 FVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQL 617
             P       K+    +  +W++      G +++ P  KP A+RVD++
Sbjct: 668 TKPFFK---PKTDTHYTIDQWKELCYESLGSLVINPKKKPRAIRVDEI 712


>gi|196000070|ref|XP_002109903.1| hypothetical protein TRIADDRAFT_20536 [Trichoplax adhaerens]
 gi|190588027|gb|EDV28069.1| hypothetical protein TRIADDRAFT_20536 [Trichoplax adhaerens]
          Length = 190

 Score =  150 bits (380), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 75/178 (42%), Positives = 110/178 (61%), Gaps = 2/178 (1%)

Query: 845  VFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEA 904
            +FPD+ EG L+ YR+A+V N+ L  L K++ L++F+ Y+H  +      L  ++AN  EA
Sbjct: 1    MFPDLSEGDLSVYRSALVNNKQLGRLGKKLKLDEFLAYSH--EALKNNNLDRSIANGVEA 58

Query: 905  LMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLK 964
            L GA++L+ G+D   ++F  + + D+      WM    HPLQEQ PDGDR  + +S  L+
Sbjct: 59   LFGAMYLENGLDRVREIFGKLTFDDDSELMGTWMNLVTHPLQEQFPDGDRILIPKSQFLQ 118

Query: 965  QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
             L   E S GV F HIRLLA+ FT  S G  +LT+G  QRLEFLGD +L  + + ++Y
Sbjct: 119  GLTDFEESIGVEFKHIRLLAKAFTHPSAGLNHLTIGDYQRLEFLGDAILSYMLASHVY 176


>gi|148671307|gb|EDL03254.1| mCG115971 [Mus musculus]
          Length = 102

 Score =  143 bits (360), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 82/102 (80%)

Query: 717 HAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLS 776
           HAM++PVL  H+R+H+ L  L+  I Y FQ+R LLQLA+THPS+  NFG NPDHARNSLS
Sbjct: 1   HAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLS 60

Query: 777 NCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATES 818
           NCG+RQP+YGDR++H  + RK+GINTLINIMS+LG+   T S
Sbjct: 61  NCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPS 102


>gi|148669669|gb|EDL01616.1| mCG129498 [Mus musculus]
          Length = 152

 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/149 (44%), Positives = 97/149 (65%), Gaps = 2/149 (1%)

Query: 550 KDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKP 609
           +D GKE+L M+++L +       ++ E+   +       EWQ +A+  KGMI+  PG+KP
Sbjct: 4   QDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPGTKP 63

Query: 610 CAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPK 667
            ++R+DQLDRE    ++  +P  VHFG RP QL +AG P +QKLWK YVKLRHL+AN PK
Sbjct: 64  SSVRIDQLDREQFNPEVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPK 123

Query: 668 RTAEDKRRLAAKEQRLQEMRTNSKMKRGV 696
               DK++LA +E+ LQ++R  + M+R V
Sbjct: 124 VKQTDKQKLAQREEALQKIRQKNTMRREV 152


>gi|340378479|ref|XP_003387755.1| PREDICTED: ribonuclease 3-like [Amphimedon queenslandica]
          Length = 349

 Score =  130 bits (327), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/181 (40%), Positives = 111/181 (61%), Gaps = 8/181 (4%)

Query: 845  VFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHE-VELKHAMANCFE 903
            +FP   +  L  +R A++ NQ+LA +AKRI LE ++L     D+  +  ++ H  AN  E
Sbjct: 1    MFPSFTDSHLVIFRKALICNQNLATVAKRIHLEKYLL----MDVNFKNADINHIYANTLE 56

Query: 904  ALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLL 963
            AL+GA++ D  I+ +  V +++L+ + ++R   W+   +  LQ    DGDR  V + P+L
Sbjct: 57   ALIGAVYKDSDINTSSIVLATLLFPEEDLR-GIWLSEYKDQLQVDSTDGDRHMVNEYPIL 115

Query: 964  KQLQY--LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 1021
              + +  LE S GV F +IRLLAR FT  S G T+L +G  QR+EFLGD +LQ +TSDY+
Sbjct: 116  NVISFNKLEESIGVRFTNIRLLARAFTHPSYGCTDLLIGDYQRMEFLGDAILQFLTSDYV 175

Query: 1022 Y 1022
            Y
Sbjct: 176  Y 176



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 60/101 (59%), Gaps = 4/101 (3%)

Query: 816 TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
           T+  I   +R+EFLGDA+++F+TS +++  FP   EG L+T+R AIV N+ LA ++  +G
Sbjct: 149 TDLLIGDYQRMEFLGDAILQFLTSDYVYDTFPLHHEGHLSTFRTAIVHNKQLAEVSVELG 208

Query: 876 LEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
               +L   G D    V      A+  E+ + AL+LD G++
Sbjct: 209 FPQHLLL--GKD--QTVTNFKVHADLIESFITALYLDKGME 245


>gi|195116871|ref|XP_002002975.1| GI17670 [Drosophila mojavensis]
 gi|193913550|gb|EDW12417.1| GI17670 [Drosophila mojavensis]
          Length = 96

 Score =  124 bits (310), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 55/79 (69%), Positives = 67/79 (84%)

Query: 845 VFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEA 904
           +FP+ EEGGLA Y AAIVQNQH A LAK++ LE+FMLYA G D+CHE+EL+HAM +CFE 
Sbjct: 1   MFPEQEEGGLAMYSAAIVQNQHCALLAKKLQLEEFMLYAQGLDMCHELELRHAMVSCFED 60

Query: 905 LMGALFLDGGIDVADQVFS 923
           LMGA+ LDGGI VAD+VF+
Sbjct: 61  LMGAILLDGGIMVADEVFT 79


>gi|348677513|gb|EGZ17330.1| hypothetical protein PHYSODRAFT_300435 [Phytophthora sojae]
          Length = 907

 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 150/677 (22%), Positives = 273/677 (40%), Gaps = 160/677 (23%)

Query: 451  KPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPN---GFTVKD 507
            + T I  +++ ++F+GF L  H    ++P  +  R ++   I +I E++P+   G +  D
Sbjct: 115  RQTTIMLEDKVYLFDGFYLLCHCDPPEVPRFEYTRGDVMCKIHFIPEELPSSVRGMSGND 174

Query: 508  TELFFN----------------YLFHEILELVDLDLKS----------ANNKDGCPQFHI 541
             +   N                YLF ++L +    L S           +  + C  +H+
Sbjct: 175  VDADVNGEIHRSFCHSLFMLQRYLFQQLLGIQPAHLFSKVFPDPAHATGDPSEICGDYHL 234

Query: 542  MPRFV---------RELKDNGKE-------LLPMYRVLEF--FTSSFVPVISEKLAKSKD 583
            +PRF+         RE  D+          LL + ++L F  F++ F           +D
Sbjct: 235  VPRFIAVKEEPLLRREDLDSPNRIGYAVGRLLSVQQLLAFLDFSAKFT---------VRD 285

Query: 584  DLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDIYPDAVHFGSRPLQLCFA 643
              + +   +  D V   +  +   +P   RVD++        I+  +   G +P+     
Sbjct: 286  FFAQFNHNELIDCV---VSTRINGQPSVFRVDEI--------IFEPSEAEGGKPVS---- 330

Query: 644  GSPDFQKLWKGYV--KLRHL--VANKPKRT-----AEDKRRLAAKEQRLQEMRTNSKMKR 694
                      G V    RH+  +A++ +       A+ K+R+   +Q  + ++ + +++ 
Sbjct: 331  ---------SGVVMKDGRHVRAIAHRGQGARNYDGAKSKKRIRKWQQEGEFLQLSPEVEP 381

Query: 695  GVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLA 754
              +  +     + TG+  D+ +    +P+++ ++R    L   E+++  KF+++ LL+ A
Sbjct: 382  H-SEELHPMECHLTGVRADLFEVGSAMPMVLKYVRHFNLLTSFEEQMGLKFRDKALLRQA 440

Query: 755  LTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLG--- 811
             TH SY +    N +    + S   VR           + +R   ++    I  K     
Sbjct: 441  FTHGSYIDIGMQNVNTVEATRSR--VRLGHVFQNVASLKRSRSMALDGDALIPGKAAGNN 498

Query: 812  ----RKVATES------------NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLA 855
                RKVA +              +   ERLEFLGDAV+ F+ +   F   P+ +EG L 
Sbjct: 499  ASQLRKVAEQHLSCDFKEEFHSRYLCPYERLEFLGDAVLGFLVASSAFLKLPNADEGFLH 558

Query: 856  TYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGI 915
              R  IV N  L  +AK       +L A      +E       A+CFEAL+GAL+ D GI
Sbjct: 559  QTRVDIVNNISLGKMAKTANFGCLLLSAFDLAKLNEDTKGKITADCFEALLGALYKDQGI 618

Query: 916  DVADQVFSSVL-YKDNEVRFKQWMYYPQ-----HPLQEQEPDGDRQWVEQSPLLKQLQYL 969
                 +   ++   D E+R   ++   +         E++ D  ++W +           
Sbjct: 619  VPCRALLGKLIDMHDAELRELCFLSTDELLTEAKAFVEKDRDAIKKWSK----------- 667

Query: 970  EYSSGVIFNHIRLLARVFTTRS---MGYTNLTLG----------------------SNQR 1004
                   + H RLL R F  RS   +  T+L L                       S +R
Sbjct: 668  -------YTHTRLLHRRFAARSGVDIANTHLWLQTMTHASFQKPQIDDDEFIGHDPSYER 720

Query: 1005 LEFLGDTVLQLITSDYL 1021
            +EFLGD+VLQL++S++L
Sbjct: 721  IEFLGDSVLQLLSSEFL 737



 Score = 63.5 bits (153), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 68/119 (57%), Gaps = 4/119 (3%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           ER+EFLGD+V++ ++S  L   FP  +E  L   R+++V+N+ LA +A+  G E+F+   
Sbjct: 719 ERIEFLGDSVLQLLSSEFLVDAFPYHQEHLLTQVRSSLVKNKKLAIVARNAGYEEFIRLG 778

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLD--GGIDVADQVFSSVLYK--DNEVRFKQWM 938
           +       + ++  +A+ FEA +GA++++  G +     +   +L+      +R +QWM
Sbjct: 779 NEVKKNGTLYVEDVLADVFEATLGAVYMENPGDLGKVRSILDKLLFPRLTEAIRRRQWM 837


>gi|40455575|gb|AAR85911.1| ribonuclease III-like protein [Rattus norvegicus]
          Length = 288

 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 61/75 (81%)

Query: 948  QEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEF 1007
            QEP+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EF
Sbjct: 3    QEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEF 62

Query: 1008 LGDTVLQLITSDYLY 1022
            LGD+++QL+ ++YL+
Sbjct: 63   LGDSIMQLVATEYLF 77



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
            + HN+R+EFLGD++++ + + +LF  FPD  EG L   R+++V N+  A +A+ +G+++
Sbjct: 53  TLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE 112

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
           + +    +     +  K  +A+  E+ + AL++D  ++
Sbjct: 113 YAITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLE 149


>gi|330802362|ref|XP_003289187.1| hypothetical protein DICPUDRAFT_79950 [Dictyostelium purpureum]
 gi|325080763|gb|EGC34305.1| hypothetical protein DICPUDRAFT_79950 [Dictyostelium purpureum]
          Length = 1059

 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 109/200 (54%), Gaps = 29/200 (14%)

Query: 823  NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
            N+RLE+LGD+V++  +SI+LF+ +   +EG L+  RA  ++N +L  ++KR+ L++ +  
Sbjct: 788  NQRLEYLGDSVLKLASSIYLFYKYSGSKEGALSMERANNIKNDNLIEVSKRMHLDEIL-- 845

Query: 883  AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 942
                 L +  E+K   A+  EAL GA+ LD G + A ++    ++ D+ VR         
Sbjct: 846  ----RLSNSDEIKKPHADVIEALFGAISLDRGFEKAYEIIVRYVFNDSNVRL-------- 893

Query: 943  HPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSN 1002
             PL +         +E++ L   L+ L ++  +  +H  LL   F++     TN+     
Sbjct: 894  -PLYQSS-------MEETVLSHDLRTLLFNLDLRIDHPSLLEEAFSSG----TNVNY--- 938

Query: 1003 QRLEFLGDTVLQLITSDYLY 1022
            QRLEF+GD VL  IT+DYLY
Sbjct: 939  QRLEFVGDGVLDYITADYLY 958



 Score = 67.0 bits (162), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 70/125 (56%), Gaps = 8/125 (6%)

Query: 808  SKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHL 867
            S L    ++ +N+ + +RLEF+GD V+++IT+ +L+  FP+  EG L  +R+ +V+N +L
Sbjct: 924  SLLEEAFSSGTNVNY-QRLEFVGDGVLDYITADYLYKEFPEYNEGTLTEFRSRLVRNNNL 982

Query: 868  AHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS--V 925
            +  +KR+ L       + +D          + + FE+L+G L LD G++   Q       
Sbjct: 983  SDASKRLKLP-----PNITDEERAALPPKRLGDYFESLVGCLVLDRGVEETKQFVKKHLH 1037

Query: 926  LYKDN 930
            LYKDN
Sbjct: 1038 LYKDN 1042


>gi|170029002|ref|XP_001842383.1| ribonuclease iii [Culex quinquefasciatus]
 gi|167879433|gb|EDS42816.1| ribonuclease iii [Culex quinquefasciatus]
          Length = 192

 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 50/55 (90%)

Query: 846 FPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMAN 900
           FPD+EEGGLATYRAAIVQNQHLA LAK++ LE FMLYAH SDLCHE+EL+HA+ +
Sbjct: 29  FPDLEEGGLATYRAAIVQNQHLAVLAKKLYLEKFMLYAHESDLCHELELRHALPD 83


>gi|166240125|ref|XP_647462.2| hypothetical protein DDB_G0268410 [Dictyostelium discoideum AX4]
 gi|165988755|gb|EAL73658.2| hypothetical protein DDB_G0268410 [Dictyostelium discoideum AX4]
          Length = 1385

 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 109/220 (49%), Gaps = 32/220 (14%)

Query: 807  MSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQH 866
            +++LG     +  +  N+RLEFLGD+V++ +++I+LF  +P + EG L+  R+   +N H
Sbjct: 1078 LTQLGIFGKYQPYLGDNQRLEFLGDSVLKLVSTIYLFFKYPKMSEGFLSQTRSDFTKNDH 1137

Query: 867  LAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
            L  ++KR+GLE+ + +        E E +   A+  EAL+GA+++D G   A ++    +
Sbjct: 1138 LLDVSKRLGLEEILRFT------TEEEFRKPQADVIEALIGAVYIDRGFFEAYKLTVCWI 1191

Query: 927  YKDNEVRFKQWMYYPQHPLQEQEP----DGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRL 982
            + + +  +  +    +  L  QE     DG    +  S LL++     YS          
Sbjct: 1192 FDEPDAEYPIYNTKFEETLAHQEIRAFLDGIGVHISHSSLLEEALCFPYS---------- 1241

Query: 983  LARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
                F + S  Y        QRLE++GD VL    SD+LY
Sbjct: 1242 ----FHSASKSY--------QRLEYVGDAVLDFFVSDFLY 1269



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 38/53 (71%)

Query: 824  ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
            +RLE++GDAV++F  S  L+  FP  +EG L  YR+ +V+N +L+ +++++ L
Sbjct: 1250 QRLEYVGDAVLDFFVSDFLYATFPLAQEGQLTDYRSRLVRNSNLSSISRKLCL 1302


>gi|406909765|gb|EKD49949.1| Ribonuclease III [uncultured bacterium]
          Length = 229

 Score = 94.7 bits (234), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 1/129 (0%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I  NER+EFLGDAV+E +++ HL+   PD +EG +  YR+A+V+ +HLA +A  + L D+
Sbjct: 39  IESNERMEFLGDAVLELVSTEHLYKNHPDYDEGEMTNYRSALVKGRHLADIALELALGDY 98

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ-VFSSVLYKDNEVRFKQWM 938
           +  +HG +        H +AN  EAL+GA++LD G   A++ V   +L + +E+  K   
Sbjct: 99  LRMSHGEEKSEGNRKNHILANTLEALIGAIYLDKGFKTAEKFVKKFILVRLDEIIEKNLH 158

Query: 939 YYPQHPLQE 947
             P+   QE
Sbjct: 159 IDPKSQFQE 167



 Score = 41.2 bits (95), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDY 1020
            +K    LE   G+ F    +L   F  RS    + N  + SN+R+EFLGD VL+L+++++
Sbjct: 1    MKDSSILEKLIGIKFKDKNILNNAFIHRSYINEHRNEGIESNERMEFLGDAVLELVSTEH 60

Query: 1021 LY 1022
            LY
Sbjct: 61   LY 62


>gi|169830829|ref|YP_001716811.1| ribonuclease III [Candidatus Desulforudis audaxviator MP104C]
 gi|169637673|gb|ACA59179.1| Ribonuclease III [Candidatus Desulforudis audaxviator MP104C]
          Length = 235

 Score = 94.0 bits (232), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 91/166 (54%), Gaps = 17/166 (10%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HN+RLEFLGDAV+E + S HL+   PD  EG L   RAA+V    LAH+A+ + L  ++ 
Sbjct: 42  HNQRLEFLGDAVLEIVVSEHLYRRLPDAPEGDLTKIRAAVVCEPALAHVAREMNLGTYLR 101

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA--------DQVFSSVLYKDNEVR 933
              G +L    E    +A+  EAL+GAL+LD G++VA        + + S+ L    E  
Sbjct: 102 MGRGEELSGGRERPSVLADALEALLGALYLDQGLEVARWFALQSLEPIISATLAGKGEAD 161

Query: 934 FKQWMYYPQHPLQEQEPDGDRQWV--EQSPLLKQLQYLEYSSGVIF 977
           +K  +   Q  LQ++ P+  R  +  E+ P   +L    +++GV++
Sbjct: 162 YKTRL---QELLQKRSPEPLRYVIIKEEGPDHNKL----FTAGVVY 200



 Score = 40.4 bits (93), Expect = 5.9,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 28/49 (57%)

Query: 974  GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            G+ +    LL    T  S  Y +     NQRLEFLGD VL+++ S++LY
Sbjct: 15   GLFWRDPDLLLEALTHSSFSYEHPGHRHNQRLEFLGDAVLEIVVSEHLY 63


>gi|281211700|gb|EFA85862.1| putative RNase III [Polysphondylium pallidum PN500]
          Length = 1126

 Score = 93.6 bits (231), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 104/201 (51%), Gaps = 27/201 (13%)

Query: 823  NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
            N+R+EFLGD+V++F TSI+LF+ FP+  EG L T R+ +  N +L  +     +++ +  
Sbjct: 746  NQRIEFLGDSVLKFCTSIYLFYKFPEAMEGVLTTKRSEMTNNNYLIEICDMFEMDEVLRL 805

Query: 883  AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 942
                D     ++K   A+  EAL GA++L+ G+  A +    +++K +  +F ++  + Q
Sbjct: 806  PQNKD-----DIKKPKADVVEALFGAVYLERGMYEAFRFIMKMIFKIDHSKFPEYKCHHQ 860

Query: 943  HPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIF-NHIRLLARVFTTRSMGYTNLTLGS 1001
            +    + P  D Q                   ++F N+I +      T +M  ++    S
Sbjct: 861  Y----ETPLNDVQI-----------------NILFANNIEIKHNCLFTEAMNCSSDPRMS 899

Query: 1002 NQRLEFLGDTVLQLITSDYLY 1022
             QRLEFLGD  L ++TSD+L+
Sbjct: 900  YQRLEFLGDAFLDVVTSDFLF 920



 Score = 69.7 bits (169), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 58/93 (62%), Gaps = 3/93 (3%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           +RLEFLGDA ++ +TS  LFH FP+ +EG L+  RA +V+N  LA + +++ L+D +  +
Sbjct: 901 QRLEFLGDAFLDVVTSDFLFHAFPNEQEGFLSQARALLVKNDSLACIFQQLNLKDCVDLS 960

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
               +      +  M + FE+++G L LD GI+
Sbjct: 961 SCPGIVFN---QKRMGDLFESVVGCLLLDQGIE 990


>gi|170037638|ref|XP_001846663.1| ribonuclease iii [Culex quinquefasciatus]
 gi|167880947|gb|EDS44330.1| ribonuclease iii [Culex quinquefasciatus]
          Length = 166

 Score = 93.2 bits (230), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 42/53 (79%), Positives = 48/53 (90%)

Query: 846 FPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAM 898
           F D+EEGGLATYRAAIVQNQHLA LAK++ LE FMLYAH SDLCHE+EL+HA+
Sbjct: 3   FLDLEEGGLATYRAAIVQNQHLAVLAKKLYLEKFMLYAHESDLCHELELRHAL 55


>gi|383753564|ref|YP_005432467.1| putative ribonuclease 3 [Selenomonas ruminantium subsp. lactilytica
           TAM6421]
 gi|381365616|dbj|BAL82444.1| putative ribonuclease 3 [Selenomonas ruminantium subsp. lactilytica
           TAM6421]
          Length = 240

 Score = 92.4 bits (228), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/104 (43%), Positives = 68/104 (65%)

Query: 815 ATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI 874
           A E NI HNERLEFLGDAV+E  +S +L+  FP + EG L   RA+IV +  LA LA+ +
Sbjct: 43  AKEKNIVHNERLEFLGDAVLELASSTYLYMHFPQMPEGQLTKTRASIVCSTSLAELARTL 102

Query: 875 GLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
            L D++L  HG ++    + +  + + FE+++GA++LD G + A
Sbjct: 103 HLGDYLLLGHGEEMSGGRDRQTNLEDVFESVIGAIYLDQGWETA 146


>gi|406967857|gb|EKD92839.1| hypothetical protein ACD_28C00319G0003 [uncultured bacterium]
          Length = 232

 Score = 90.9 bits (224), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 80/131 (61%), Gaps = 4/131 (3%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E + +  LF  +P+ +EG L  +R+A+V+  HLAH+AK + L +++  
Sbjct: 44  NERLEFLGDAVLELVVTEFLFKNYPN-DEGELTNWRSALVKGSHLAHIAKELNLGEYLFL 102

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS--VLYKDNEVRFKQWMYY 940
           +HG +        + +AN FEAL+GA++LD G +VA +  +   ++Y +N +  K     
Sbjct: 103 SHGEEKSGGRTKNYILANTFEALLGAIYLDKGYEVAHKFINDFVLIYLENILE-KGLHID 161

Query: 941 PQHPLQEQEPD 951
           P+   QE   D
Sbjct: 162 PKSKFQEMAQD 172


>gi|289578474|ref|YP_003477101.1| ribonuclease III [Thermoanaerobacter italicus Ab9]
 gi|297544750|ref|YP_003677052.1| ribonuclease III [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|289528187|gb|ADD02539.1| ribonuclease III [Thermoanaerobacter italicus Ab9]
 gi|296842525|gb|ADH61041.1| ribonuclease III [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 246

 Score = 90.9 bits (224), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 64/217 (29%)

Query: 732 RSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIH 791
           ++L+ LE +I Y F+N+ LL  ALTH S+                               
Sbjct: 18  KNLSELEKKINYSFKNKDLLIEALTHSSWAH----------------------------- 48

Query: 792 FQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEE 851
                  G N+ I+                 NERLEFLGD+V+  + S +L+    D+EE
Sbjct: 49  ------EGKNSKIS-----------------NERLEFLGDSVLSLVISEYLYKNRKDLEE 85

Query: 852 GGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFL 911
           G L+ YRA IV    LA  A+ IGL +F+L   G ++    E    +A+  EAL+ A++L
Sbjct: 86  GSLSKYRAEIVCEPSLARCAREIGLGNFLLIGKGEEMTGGRERDSLLADAMEALLAAVYL 145

Query: 912 DGGIDVA------------DQVFSSVLYKDNEVRFKQ 936
           DGG++V             ++V   ++Y+D + + ++
Sbjct: 146 DGGLEVVRNIILDLFRNIIEEVLEGLIYRDYKTKLQE 182



 Score = 40.8 bits (94), Expect = 3.5,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 964  KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG-SNQRLEFLGDTVLQLITSDYLY 1022
            K L  LE      F +  LL    T  S  +       SN+RLEFLGD+VL L+ S+YLY
Sbjct: 18   KNLSELEKKINYSFKNKDLLIEALTHSSWAHEGKNSKISNERLEFLGDSVLSLVISEYLY 77


>gi|253578969|ref|ZP_04856240.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849912|gb|EES77871.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 227

 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 103/229 (44%), Gaps = 55/229 (24%)

Query: 731 HRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRI 790
           +R    LE+ I Y F+N++ L  ALTH SY                              
Sbjct: 2   NRKTEELEEIIGYHFKNKHYLTQALTHSSY------------------------------ 31

Query: 791 HFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIE 850
              N +K G         KLG           NERLEFLGDAV+E I+S +L+  F  I 
Sbjct: 32  --ANEKKLG---------KLGS----------NERLEFLGDAVLELISSDYLYARFTQIP 70

Query: 851 EGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALF 910
           EG L   RA++V    LA+ A+  GL  F+L   G D+         +++  EAL+GA++
Sbjct: 71  EGELTKKRASLVCEPSLAYCAREFGLPQFLLLGKGEDMTGGRNRDSIVSDATEALLGAIY 130

Query: 911 LDGGIDVADQ-VFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVE 958
           LDGG   A + V + +L   N++  KQ  Y  +  LQE   +   Q VE
Sbjct: 131 LDGGFANAKEFVLNFIL---NDIEHKQLFYDSKTILQEIVQENGTQPVE 176



 Score = 47.0 bits (110), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 20/24 (83%), Positives = 23/24 (95%)

Query: 999  LGSNQRLEFLGDTVLQLITSDYLY 1022
            LGSN+RLEFLGD VL+LI+SDYLY
Sbjct: 40   LGSNERLEFLGDAVLELISSDYLY 63


>gi|373456823|ref|ZP_09548590.1| Ribonuclease 3 [Caldithrix abyssi DSM 13497]
 gi|371718487|gb|EHO40258.1| Ribonuclease 3 [Caldithrix abyssi DSM 13497]
          Length = 264

 Score = 90.9 bits (224), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/138 (35%), Positives = 82/138 (59%), Gaps = 2/138 (1%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           ES +  NERLEFLGDAV++ I + HLFH FP+  EG L+  R+ +V  Q LA + + IGL
Sbjct: 54  ESALESNERLEFLGDAVLDLIIAEHLFHNFPNKNEGELSKKRSVLVSRQVLAQITEEIGL 113

Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE--VRF 934
            +++L   G +     +  + +AN FE+++GA++LDGG+  A    +  + +  E  ++ 
Sbjct: 114 GEYLLLDKGEEKTGGRKRLNNLANLFESVLGAIYLDGGLTAARNFVNHFILRKREDLLKV 173

Query: 935 KQWMYYPQHPLQEQEPDG 952
           K++  Y    L++ +  G
Sbjct: 174 KRYHNYKSELLEKAQSKG 191


>gi|401563684|ref|ZP_10804629.1| ribonuclease III [Selenomonas sp. FOBRC6]
 gi|400189583|gb|EJO23667.1| ribonuclease III [Selenomonas sp. FOBRC6]
          Length = 238

 Score = 90.9 bits (224), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 70/102 (68%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           + +I HNERLEFLGDAV+E  +S +L+  FP+  EG L   RA++VQ++ LA LA+++ L
Sbjct: 44  KDDIPHNERLEFLGDAVLELASSTYLYAHFPECSEGELTKMRASLVQSETLARLARKLDL 103

Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
            +++L+  G       + ++ + N FEA++GA++LDGG + A
Sbjct: 104 GNYLLFGRGELHNGGADRQNNLENAFEAVVGAVYLDGGWETA 145



 Score = 40.0 bits (92), Expect = 7.4,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 969  LEYSSGVIFNHIRLLARVFTTRSMGYTNLT---LGSNQRLEFLGDTVLQLITSDYLY 1022
            L    GV F  + LL    T  S  YTN     +  N+RLEFLGD VL+L +S YLY
Sbjct: 16   LSVQIGVSFGDLSLLDEALTHPS--YTNEAKDDIPHNERLEFLGDAVLELASSTYLY 70


>gi|406929771|gb|EKD65281.1| hypothetical protein ACD_50C00142G0004 [uncultured bacterium]
          Length = 220

 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 76/126 (60%), Gaps = 1/126 (0%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGD+++ FI S  LF+ + +  EG L   R+ +V  + L+ +A+ +   D ++ 
Sbjct: 33  NERLEFLGDSILSFIVSTSLFNRYKEFNEGSLTNLRSLLVNTKTLSKIAQELNFGDLLML 92

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
           + G +     +    +ANCFEA +GALF+D GI+ + +  +SVL  K +E+  K+ +  P
Sbjct: 93  SKGEEESKGRQNPTLLANCFEAYVGALFIDQGIEESSKFINSVLLSKVDEIIQKETLKDP 152

Query: 942 QHPLQE 947
           +  LQE
Sbjct: 153 KSILQE 158


>gi|76154798|gb|AAX26217.2| SJCHGC08309 protein [Schistosoma japonicum]
          Length = 197

 Score = 90.5 bits (223), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 54/86 (62%), Gaps = 1/86 (1%)

Query: 370 ELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTN 429
           E+  K  HP+RLHP++W N+  E NDGP C C  K  R G  HN Y GE     C P++N
Sbjct: 112 EIAYKIEHPNRLHPDIWHNEANEFNDGPACSCKPK-YRIGPLHNQYEGEQPIPLCIPESN 170

Query: 430 NADKLYHYRVTVSPPTNFLINKPTVI 455
           N D+L+HYRV +SP TNF+   P+ +
Sbjct: 171 NRDRLHHYRVIISPTTNFVQPIPSKV 196


>gi|406670677|ref|ZP_11077922.1| ribonuclease III [Facklamia hominis CCUG 36813]
 gi|405582193|gb|EKB56199.1| ribonuclease III [Facklamia hominis CCUG 36813]
          Length = 234

 Score = 90.1 bits (222), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 68/108 (62%), Gaps = 1/108 (0%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I  NERLEFLGDAV+E + S  LF+ +P+  EG L+  RA +V+   LAHLA+ +  ED+
Sbjct: 41  IGSNERLEFLGDAVLEILVSNFLFNTYPNEPEGTLSRMRAQLVREDSLAHLARCMHFEDY 100

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +    G    H  +    +++CFEA +GAL+LD GID+  Q F + L+
Sbjct: 101 LRLGKGELASHSNQRDSLLSDCFEAFLGALYLDQGIDIC-QAFLNQLF 147


>gi|407001808|gb|EKE18718.1| hypothetical protein ACD_9C00254G0001 [uncultured bacterium]
          Length = 233

 Score = 90.1 bits (222), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 49/136 (36%), Positives = 83/136 (61%), Gaps = 2/136 (1%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E I + HL++ + +  EG L ++R+A+V  + LAH+A+ IG+E +
Sbjct: 43  LEHNERLEFLGDAVLELIITEHLYNNYKN-PEGELTSWRSALVNGEMLAHVAQEIGVEKY 101

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ-VFSSVLYKDNEVRFKQWM 938
           +L + G         ++ +AN  EA++GA +LD G DV  + V  +V  +  E+  K+  
Sbjct: 102 LLMSRGEAKDKGRARQYLLANALEAIIGATYLDQGYDVTKKFVLKNVAIRLKEILEKKLY 161

Query: 939 YYPQHPLQEQEPDGDR 954
             P+   QE+  + ++
Sbjct: 162 LDPKSYFQEKAQENNK 177



 Score = 43.9 bits (102), Expect = 0.43,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 966  LQYLEYSSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            ++ L    GV F+++ LL +  T RS    N    L  N+RLEFLGD VL+LI +++LY
Sbjct: 8    IESLAKKIGVKFDNVELLRQAVTHRSYLNENRDYALEHNERLEFLGDAVLELIITEHLY 66


>gi|291522183|emb|CBK80476.1| RNAse III [Coprococcus catus GD/7]
          Length = 233

 Score = 90.1 bits (222), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 101/223 (45%), Gaps = 53/223 (23%)

Query: 731 HRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRI 790
           H  L  L+ +I Y+F++  LL  ALTH SY                       E+   +I
Sbjct: 4   HTLLKELQQKIDYQFKDENLLFTALTHSSYAN---------------------EHKLHKI 42

Query: 791 HFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIE 850
           H                              HNERLEFLGDAV+E ++S  LF  FPD+ 
Sbjct: 43  H------------------------------HNERLEFLGDAVLEVVSSDFLFKNFPDMA 72

Query: 851 EGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALF 910
           EG ++  RA++V    LA+ A++IGL  +++   G D+         +++  EA++G+++
Sbjct: 73  EGQMSKKRASLVCEPTLAYCARQIGLGKYLMLGKGEDMGGGRNRDSILSDALEAVIGSIY 132

Query: 911 LDGGIDVADQVFSSVLYKDNEVR--FKQWMYYPQHPLQEQEPD 951
           LDGGI+ A     + +  D E +  F+      Q  LQ+   D
Sbjct: 133 LDGGIEQAGSFIMTHVLNDIEHKAMFQDSKTILQELLQKDHKD 175


>gi|365174613|ref|ZP_09362054.1| ribonuclease III [Synergistes sp. 3_1_syn1]
 gi|363614536|gb|EHL66027.1| ribonuclease III [Synergistes sp. 3_1_syn1]
          Length = 230

 Score = 89.7 bits (221), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 71/133 (53%), Gaps = 2/133 (1%)

Query: 815 ATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI 874
           A E+ +  NERLEFLGDAV+E +TS  LF  +PD +EG L   RA IV    L+  A  +
Sbjct: 38  ANENGVKFNERLEFLGDAVLELVTSDKLFSSYPDYDEGQLTRLRARIVCKNSLSLWASEM 97

Query: 875 GLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRF 934
           GL++  L   G  L          A+C EAL GA+FLDGG   A +  S+ L    E+  
Sbjct: 98  GLKN--LIRIGKSLVKSGPTDSVAADCVEALFGAIFLDGGFPNAVEAVSNFLDTKPEISG 155

Query: 935 KQWMYYPQHPLQE 947
              +  P+  LQE
Sbjct: 156 AAVIKDPKTELQE 168


>gi|427407296|ref|ZP_18897501.1| ribonuclease III [Selenomonas sp. F0473]
 gi|425707386|gb|EKU70431.1| ribonuclease III [Selenomonas sp. F0473]
          Length = 251

 Score = 89.7 bits (221), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 1/139 (0%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I HNERLE+LGDAV+E  +S +L+  FP   EG L   RA++VQ++ LA LA+R+ L  +
Sbjct: 60  IPHNERLEYLGDAVLELASSTYLYECFPACTEGELTKMRASLVQSETLARLARRLDLGAY 119

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA-DQVFSSVLYKDNEVRFKQWM 938
           +   HG       E ++ + N FEA++GA++LDGG + A D  ++ +  +   +R +Q  
Sbjct: 120 LRLGHGEAQDGGAERQNNLENAFEAVVGAVYLDGGWEAAKDYAYAQLASEVGRLRPEQVQ 179

Query: 939 YYPQHPLQEQEPDGDRQWV 957
              +  LQE      R+ V
Sbjct: 180 RDYKTTLQEYIQKTQRETV 198



 Score = 40.0 bits (92), Expect = 7.4,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 964  KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT---LGSNQRLEFLGDTVLQLITSDY 1020
            K L+ L    G+ F  I LL    T  S  Y N +   +  N+RLE+LGD VL+L +S Y
Sbjct: 24   KALERLSVRLGIRFADISLLDEALTHSS--YANESRKLIPHNERLEYLGDAVLELASSTY 81

Query: 1021 LY 1022
            LY
Sbjct: 82   LY 83


>gi|406992829|gb|EKE12110.1| hypothetical protein ACD_14C00014G0001 [uncultured bacterium]
          Length = 227

 Score = 89.4 bits (220), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 50/136 (36%), Positives = 83/136 (61%), Gaps = 2/136 (1%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E I + +L++ + +  EG L ++R+A+V  + LAH+A  IG+E F
Sbjct: 37  LNHNERLEFLGDAVLELIITEYLYNNYKN-PEGELTSWRSALVNGEMLAHVASEIGVEKF 95

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ-VFSSVLYKDNEVRFKQWM 938
           +L + G         ++ +AN  EA++GA +LD G +V+ + V S V  K  E+  K+  
Sbjct: 96  LLMSRGEAKDTGRARQYLLANALEAIIGATYLDQGYEVSKKLVLSHVAIKLQEILDKKLY 155

Query: 939 YYPQHPLQEQEPDGDR 954
             P+   QE+  + ++
Sbjct: 156 LDPKSYFQEKAQENNK 171



 Score = 47.0 bits (110), Expect = 0.058,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 966  LQYLEYSSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            ++ L    GV F +I LL +  T RS    N    L  N+RLEFLGD VL+LI ++YLY
Sbjct: 2    IESLAKKIGVKFKNIELLRQAVTHRSYLNENRDYALNHNERLEFLGDAVLELIITEYLY 60


>gi|153810622|ref|ZP_01963290.1| hypothetical protein RUMOBE_01006 [Ruminococcus obeum ATCC 29174]
 gi|149833018|gb|EDM88100.1| ribonuclease III [Ruminococcus obeum ATCC 29174]
          Length = 223

 Score = 89.4 bits (220), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 70/212 (33%), Positives = 97/212 (45%), Gaps = 55/212 (25%)

Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
           LE  I Y FQN+ LL+ ALTH SY                                 N +
Sbjct: 4   LEQIIGYTFQNKKLLKQALTHSSY--------------------------------ANEK 31

Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
           K G         KLG           NERLEFLGDAV+E I+S  L+  F  + EG L  
Sbjct: 32  KLG---------KLG----------CNERLEFLGDAVLELISSDFLYAKFTQVPEGELTK 72

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            RA++V    LA+ A++ GL  ++L   G ++         +++  EAL+GA++LDGG +
Sbjct: 73  KRASLVCEPSLAYCARQFGLPQYLLLGKGENMTGGRNRDSIVSDATEALLGAIYLDGGFE 132

Query: 917 VA-DQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
            A D V   +L   N++  KQ  Y  +  LQE
Sbjct: 133 PAKDFVLKFIL---NDIEHKQLFYDSKTILQE 161



 Score = 48.1 bits (113), Expect = 0.024,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 6/61 (9%)

Query: 966  LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT----LGSNQRLEFLGDTVLQLITSDYL 1021
            ++ LE   G  F + +LL +  T  S  Y N      LG N+RLEFLGD VL+LI+SD+L
Sbjct: 1    MEQLEQIIGYTFQNKKLLKQALTHSS--YANEKKLGKLGCNERLEFLGDAVLELISSDFL 58

Query: 1022 Y 1022
            Y
Sbjct: 59   Y 59


>gi|312864846|ref|ZP_07725077.1| ribonuclease III [Streptococcus downei F0415]
 gi|311099973|gb|EFQ58186.1| ribonuclease III [Streptococcus downei F0415]
          Length = 228

 Score = 89.0 bits (219), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/114 (41%), Positives = 68/114 (59%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDAV++ + S +LF  FP   EG L+  R+ IV+ + LA  +K  G E 
Sbjct: 39  NISHNERLEFLGDAVLQLLISRYLFEKFPKRPEGDLSKMRSMIVREESLAGFSKDCGFEA 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV 932
           F+    G +     E +  + + FEA +GAL LD GI+V ++  + V+    EV
Sbjct: 99  FIKLGKGEEKTGGRERETILGDLFEAFLGALDLDQGIEVVEKFLNQVMIPKVEV 152



 Score = 43.9 bits (102), Expect = 0.47,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 6/60 (10%)

Query: 967  QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            + L+   G++F    LL   FT  S  Y N    L +  N+RLEFLGD VLQL+ S YL+
Sbjct: 6    EKLKADFGIVFKDKSLLDTAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISRYLF 63


>gi|295109853|emb|CBL23806.1| RNAse III [Ruminococcus obeum A2-162]
          Length = 223

 Score = 89.0 bits (219), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 71/212 (33%), Positives = 97/212 (45%), Gaps = 55/212 (25%)

Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
           LE  I Y FQN+ LL+ ALTH SY                                 N +
Sbjct: 4   LEQIIGYTFQNKKLLKQALTHSSY--------------------------------ANEK 31

Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
           K G         KLG           NERLEFLGDAV+E I+S  L+  F  I EG L  
Sbjct: 32  KLG---------KLG----------CNERLEFLGDAVLELISSDFLYRKFSQIPEGELTK 72

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            RA++V    LA+ A+  GL +F+L   G ++         +++  EAL+GA++LDGG  
Sbjct: 73  KRASLVCEPSLAYCAREFGLPEFLLLGKGENMTGGRNRDSIVSDATEALLGAIYLDGGFS 132

Query: 917 VADQ-VFSSVLYKDNEVRFKQWMYYPQHPLQE 947
            A + V + +L   N++  KQ  Y  +  LQE
Sbjct: 133 NAKKFVLNFIL---NDIEHKQLFYDSKTILQE 161



 Score = 47.4 bits (111), Expect = 0.038,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 6/61 (9%)

Query: 966  LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT----LGSNQRLEFLGDTVLQLITSDYL 1021
            ++ LE   G  F + +LL +  T  S  Y N      LG N+RLEFLGD VL+LI+SD+L
Sbjct: 1    MEQLEQIIGYTFQNKKLLKQALTHSS--YANEKKLGKLGCNERLEFLGDAVLELISSDFL 58

Query: 1022 Y 1022
            Y
Sbjct: 59   Y 59


>gi|334127838|ref|ZP_08501740.1| ribonuclease III [Centipeda periodontii DSM 2778]
 gi|333388559|gb|EGK59733.1| ribonuclease III [Centipeda periodontii DSM 2778]
          Length = 238

 Score = 88.6 bits (218), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/95 (45%), Positives = 64/95 (67%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I HNERLEFLGDAV+E  +S +L+ +FPD  EG L   RA++VQ++ LA LA+++ L  +
Sbjct: 47  IAHNERLEFLGDAVLELASSTYLYALFPDCSEGELTKMRASLVQSETLARLARQLDLGSY 106

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGG 914
           +    G       E ++ + N FEA++GA++LDGG
Sbjct: 107 LRLGRGELHNGGAERQNNLENAFEAVIGAVYLDGG 141



 Score = 43.5 bits (101), Expect = 0.61,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 35/61 (57%), Gaps = 5/61 (8%)

Query: 965  QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT---LGSNQRLEFLGDTVLQLITSDYL 1021
            +L  L    GV F++I LL    T  S  YTN     +  N+RLEFLGD VL+L +S YL
Sbjct: 12   ELVRLSVHMGVSFDNIALLDEALTHPS--YTNEAKDVIAHNERLEFLGDAVLELASSTYL 69

Query: 1022 Y 1022
            Y
Sbjct: 70   Y 70


>gi|406950556|gb|EKD80794.1| hypothetical protein ACD_40C00009G0005 [uncultured bacterium]
          Length = 230

 Score = 88.6 bits (218), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 18/156 (11%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           +  NERLE+LGDAV+E  TS  L+  +PD +EG L   RAA+V+ + LA +A+ +G  D 
Sbjct: 39  VESNERLEYLGDAVLELATSHFLYSSYPDFQEGMLTNVRAALVRTESLAKIAEDLGFADL 98

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDV------------ADQVFSSVLY 927
           +  + G +       +  +A+ FEA +GA++LD G DV            A  V  +  Y
Sbjct: 99  IKMSKGEEATGGRLNRSILADTFEAFLGAIYLDQGYDVCVTILEKHLLQKAQAVLQTETY 158

Query: 928 KDN-----EVRFKQWMYYPQHPL-QEQEPDGDRQWV 957
           KDN     E+   ++   P + L  E  PD D+Q+V
Sbjct: 159 KDNKSLLQEIAQSRYKSTPLYTLISESGPDHDKQFV 194


>gi|160947505|ref|ZP_02094672.1| hypothetical protein PEPMIC_01439 [Parvimonas micra ATCC 33270]
 gi|158446639|gb|EDP23634.1| ribonuclease III [Parvimonas micra ATCC 33270]
          Length = 237

 Score = 88.6 bits (218), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 19/153 (12%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGD ++ FI S+ L+  FP+ +EG L   R+ +V  +  ++ A+   L  ++L 
Sbjct: 47  NERLEFLGDVILGFIVSVELYEQFPNSDEGYLTKIRSKVVCEESFSYAARTFNLGKYLLL 106

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV-----FSSVLYK-DNEVRFKQ 936
             G D          +A+ FEAL GAL+LDGG+DV  ++     F +V+YK D  +  K 
Sbjct: 107 GKGEDSFGGRNRNSILADTFEALFGALYLDGGMDVVTEIANKYFFDTVVYKIDKNIFIKD 166

Query: 937 WMYYPQHPLQ-------------EQEPDGDRQW 956
           +  Y Q                 E+ PD D+++
Sbjct: 167 YKSYLQEYFHKNATTKISYTLVAERGPDHDKEF 199


>gi|62184964|ref|YP_219749.1| ribonuclease III [Chlamydophila abortus S26/3]
 gi|424825015|ref|ZP_18250002.1| ribonuclease III [Chlamydophila abortus LLG]
 gi|81312866|sp|Q5L6E3.1|RNC_CHLAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|62148031|emb|CAH63783.1| ribonuclease III [Chlamydophila abortus S26/3]
 gi|333410114|gb|EGK69101.1| ribonuclease III [Chlamydophila abortus LLG]
          Length = 237

 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 86/166 (51%), Gaps = 14/166 (8%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           +ERLEFLGDAV+  I + HLF +FP ++EG L+T RAA++           +GL +++L 
Sbjct: 44  SERLEFLGDAVLCLIVTEHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEYLLI 103

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 942
             G  + +E     A AN FEA++GA++LDGG+  A Q+   +L    ++          
Sbjct: 104 GKGERIQNERGKTSAYANLFEAILGAVYLDGGLAPARQITVPLLPSKKDIL--------- 154

Query: 943 HPLQEQEPDGDRQWVEQSPL--LKQLQYLEYSS--GVIFNHIRLLA 984
            PL    P    Q + Q  L  L   QY  ++S  G    HIR+L 
Sbjct: 155 -PLMLGNPKNRLQQLTQKHLRTLPVYQYEPWTSPQGASGYHIRVLV 199


>gi|429737440|ref|ZP_19271303.1| ribonuclease III [Selenomonas sp. oral taxon 138 str. F0429]
 gi|429152615|gb|EKX95432.1| ribonuclease III [Selenomonas sp. oral taxon 138 str. F0429]
          Length = 238

 Score = 88.2 bits (217), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 68/102 (66%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           + +I HNERLEFLGDAV+E  +S +L+  FP+  EG L   RA++VQ++ LA LA+++ L
Sbjct: 44  KDDIPHNERLEFLGDAVLELASSTYLYAHFPECSEGELTKMRASLVQSETLARLARQLDL 103

Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
             ++L   G       + ++ + N FEA++GA++LDGG + A
Sbjct: 104 GSYLLLGRGELHNGGADRQNNLENAFEAVVGAVYLDGGWETA 145



 Score = 40.0 bits (92), Expect = 6.9,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 969  LEYSSGVIFNHIRLLARVFTTRSMGYTNLT---LGSNQRLEFLGDTVLQLITSDYLY 1022
            L    GV F  + LL    T  S  YTN     +  N+RLEFLGD VL+L +S YLY
Sbjct: 16   LSVQIGVSFGDLSLLDEALTHPS--YTNEAKDDIPHNERLEFLGDAVLELASSTYLY 70


>gi|407453856|ref|YP_006732964.1| ribonuclease III [Chlamydia psittaci 84/55]
 gi|405780615|gb|AFS19365.1| ribonuclease III [Chlamydia psittaci 84/55]
          Length = 223

 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 65/104 (62%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           +ERLEFLGDAV+  I + HLF +FP ++EG L+T RAA++           +GL +++L 
Sbjct: 44  SERLEFLGDAVLCLIVTEHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEYLLI 103

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
             G  + +E     A AN FEA++GA++LDGG+  A Q+   +L
Sbjct: 104 GKGERIQNERGRTSAYANLFEAILGAVYLDGGLAPARQITVPLL 147


>gi|392950932|ref|ZP_10316487.1| ribonuclease III [Hydrocarboniphaga effusa AP103]
 gi|391859894|gb|EIT70422.1| ribonuclease III [Hydrocarboniphaga effusa AP103]
          Length = 228

 Score = 88.2 bits (217), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 19/176 (10%)

Query: 807 MSKLGRKVATESNIT-HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQ 865
           ++ L R +   S+   +NERLEFLGDA++ F+   +LF + P  EEG L+  RA++V+  
Sbjct: 20  LALLDRAITHRSHAAANNERLEFLGDALINFVIGEYLFRMRPTAEEGALSRLRASLVREP 79

Query: 866 HLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV---- 921
            LA LA+ + L D +    G            +A+ FEA++GA++LDGG +VA +V    
Sbjct: 80  SLAVLARELKLGDAIKLGEGELKSGGWRRDSVLADTFEAVLGAIYLDGGFEVAKEVCLRC 139

Query: 922 FSSVL--------YKDNEVRFKQWMYYPQHP------LQEQEPDGDRQWVEQSPLL 963
           F  +L         KD + R ++W+     P      L E  P   RQ+V ++ LL
Sbjct: 140 FDKLLQQLPDPETLKDPKTRLQEWLQARARPLPIYEVLSEAGPPHRRQFVVRARLL 195


>gi|297568930|ref|YP_003690274.1| ribonuclease III [Desulfurivibrio alkaliphilus AHT2]
 gi|296924845|gb|ADH85655.1| ribonuclease III [Desulfurivibrio alkaliphilus AHT2]
          Length = 232

 Score = 88.2 bits (217), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 80/146 (54%), Gaps = 6/146 (4%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDAV++      L+   P + EG L+  RAA+V   HLA +A+R GL++ +L
Sbjct: 44  HNERLEFLGDAVLDLAVGELLYRRHPKMREGELSRRRAALVNEAHLARMARRTGLDELLL 103

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGG----IDVADQVFSSVLYKDNEVRFKQW 937
              G       +    +A+ FEAL+GA++LDGG    +D+A ++F+  +   ++      
Sbjct: 104 LGRGEAQSGGRDKPSILADAFEALLGAVYLDGGCRAVLDLAAELFAPWVTDQDDFEENDA 163

Query: 938 MYYPQHPLQEQ--EPDGDRQWVEQSP 961
               Q  LQE+  +  G R   E+ P
Sbjct: 164 KTALQEVLQERHGQAPGYRLVAEEGP 189


>gi|89898471|ref|YP_515581.1| ribonuclease III [Chlamydophila felis Fe/C-56]
 gi|123483118|sp|Q253V2.1|RNC_CHLFF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|89331843|dbj|BAE81436.1| ribonuclease III [Chlamydophila felis Fe/C-56]
          Length = 237

 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 65/104 (62%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           +ERLEFLGDAV+  I + HLF +FP ++EG L+T RAA++           +GL +++L 
Sbjct: 44  SERLEFLGDAVLCLIVTEHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEYLLI 103

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
             G  + +E     A AN FEA++GA++LDGG+  A Q+   +L
Sbjct: 104 GKGERIQNERGRTSAYANLFEAILGAVYLDGGLAPARQITVPLL 147


>gi|345886949|ref|ZP_08838163.1| ribonuclease III [Bilophila sp. 4_1_30]
 gi|345037798|gb|EGW42307.1| ribonuclease III [Bilophila sp. 4_1_30]
          Length = 233

 Score = 87.8 bits (216), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 62/197 (31%), Positives = 91/197 (46%), Gaps = 53/197 (26%)

Query: 733 SLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHF 792
           +L+VL+DRI Y+F++  LL LA+TH S+      N   A N+                  
Sbjct: 2   TLDVLQDRIGYRFKDESLLVLAVTHSSW-----ANEHSAGNA------------------ 38

Query: 793 QNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEG 852
                                        HNERLEFLGDAV+E   S  LF  FPD  EG
Sbjct: 39  -----------------------------HNERLEFLGDAVLEIAVSAQLFARFPDAREG 69

Query: 853 GLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLD 912
            L   R+++V    LA +A+++ L+D +  A G +     +    +++  EA+ G +F+D
Sbjct: 70  ELTRLRSSLVNEATLAVIARKLHLDDCLRLARGEENQGGRQRDSLLSDAMEAVFGGVFVD 129

Query: 913 GGIDVADQVFSSVLYKD 929
           GGI+ A +V    LY D
Sbjct: 130 GGIEKAREVVER-LYTD 145


>gi|406933452|gb|EKD68103.1| hypothetical protein ACD_48C00077G0008 [uncultured bacterium]
          Length = 228

 Score = 87.4 bits (215), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 63/105 (60%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDA++ F+TS  L+  +P   EG L   R+++V+ + L   AK +G  D +  
Sbjct: 40  NERLEFLGDAILSFLTSQFLYTTYPTYPEGVLTNIRSSLVKTKSLGESAKALGFGDLLFL 99

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +HG +          +A+ FEA +GA+FLD GID A Q  +S L+
Sbjct: 100 SHGEEESGGRNNMSLLADSFEAFLGAIFLDQGIDCAKQFLTSYLF 144



 Score = 41.2 bits (95), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 969  LEYSSGVIFNHIRLLARVFTTRS-MGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            L+ + GV F    LL   F  RS +        SN+RLEFLGD +L  +TS +LY
Sbjct: 6    LQSTIGVTFQDKELLQHAFYHRSYLNEAKHIKESNERLEFLGDAILSFLTSQFLY 60


>gi|406592185|ref|YP_006739365.1| ribonuclease III [Chlamydia psittaci CP3]
 gi|406594411|ref|YP_006741496.1| ribonuclease III [Chlamydia psittaci MN]
 gi|410858312|ref|YP_006974252.1| ribonuclease III [Chlamydia psittaci 01DC12]
 gi|405782843|gb|AFS21591.1| ribonuclease III [Chlamydia psittaci MN]
 gi|405788057|gb|AFS26800.1| ribonuclease III [Chlamydia psittaci CP3]
 gi|410811207|emb|CCO01852.1| ribonuclease III [Chlamydia psittaci 01DC12]
          Length = 237

 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 68/110 (61%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           +ERLEFLGDAV+  I + HLF +FP ++EG L+T RAA++           +GL +++L 
Sbjct: 44  SERLEFLGDAVLCLIVTEHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEYLLI 103

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV 932
             G  + +E     A AN FEA++GA++LDGG+  A Q+   +L  + ++
Sbjct: 104 GKGERIQNERGRTSAYANLFEAILGAVYLDGGLAPARQITVPLLPSNKDI 153


>gi|56459918|ref|YP_155199.1| RNase III, dsRNA-specific ribonuclease [Idiomarina loihiensis L2TR]
 gi|81363596|sp|Q5R106.1|RNC_IDILO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56178928|gb|AAV81650.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina loihiensis L2TR]
          Length = 229

 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 12/139 (8%)

Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
           THNERLEFLGD+++  + +  L+  FP + EG L+  RAAIV  + LA L K++GL DF+
Sbjct: 37  THNERLEFLGDSILGLVIAEALYQKFPKVAEGDLSRMRAAIVCGRSLAKLGKKMGLGDFL 96

Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF------------SSVLYK 928
               G         +  +A+  EA++GA++LD  +D   QV                  K
Sbjct: 97  SLGQGELKSGGYRRESILADAVEAIIGAIYLDSDMDTIRQVILNWFEPQLTLIEPGTSQK 156

Query: 929 DNEVRFKQWMYYPQHPLQE 947
           D + R ++ +   Q PL E
Sbjct: 157 DPKTRLQELLQARQKPLPE 175


>gi|407010671|gb|EKE25500.1| hypothetical protein ACD_5C00137G0005 [uncultured bacterium]
          Length = 229

 Score = 87.4 bits (215), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/139 (34%), Positives = 85/139 (61%), Gaps = 2/139 (1%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           + N+ HNERLEFLGDAV+E I + +L++ + +  EG L ++R+A+V  + LAH+A+ IG+
Sbjct: 36  DHNLEHNERLEFLGDAVLELIITEYLYNNYKN-PEGELTSWRSALVNGEMLAHVAQEIGV 94

Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ-VFSSVLYKDNEVRFK 935
           E+F+L + G         ++ +AN  EA++GA +LD G + + + V  +V  +  E+  K
Sbjct: 95  EEFLLMSRGEAKDTGRARQYLLANAMEAIIGATYLDQGYETSKKFVLDNVAVRLREILEK 154

Query: 936 QWMYYPQHPLQEQEPDGDR 954
           +    P+   QE+  +  +
Sbjct: 155 KLYLDPKSYFQEKAQENSK 173



 Score = 47.0 bits (110), Expect = 0.057,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL--TLGSNQRLEFLGDTVLQLITSDY 1020
            ++ ++ L    GV FN I +L +  T RS    N    L  N+RLEFLGD VL+LI ++Y
Sbjct: 1    MQMVESLAKKIGVEFNDIEILRQAVTHRSFLNENRDHNLEHNERLEFLGDAVLELIITEY 60

Query: 1021 LY 1022
            LY
Sbjct: 61   LY 62


>gi|291550077|emb|CBL26339.1| RNAse III [Ruminococcus torques L2-14]
          Length = 228

 Score = 87.4 bits (215), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 93/211 (44%), Gaps = 53/211 (25%)

Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
           LE +I Y F+++ L++ AL H SY     TN  H +     C                  
Sbjct: 7   LEQKIGYVFKDKSLIERALMHSSY-----TNEKHLKKY--EC------------------ 41

Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
                                     NERLEFLGDAV+E ++S +LF+ FP + EG L  
Sbjct: 42  --------------------------NERLEFLGDAVLELVSSAYLFNEFPKVSEGELTK 75

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            RA++V    LA  A+ IGL D++L   G +     +     ++  EAL+GA++LDGG  
Sbjct: 76  TRASMVCEPSLAMCARDIGLGDYLLLGKGEEATGGRKRDSITSDAMEALIGAIYLDGGFT 135

Query: 917 VADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
            A +     +  D E   K+  Y  +  LQE
Sbjct: 136 NAKEFIHHFILTDLED--KKLFYDSKTILQE 164


>gi|85712960|ref|ZP_01043999.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina baltica OS145]
 gi|85693198|gb|EAQ31157.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina baltica OS145]
          Length = 228

 Score = 87.4 bits (215), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 51/144 (35%), Positives = 76/144 (52%), Gaps = 12/144 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           ++  HNERLEFLGD+++  + +  LF  FP + EG L+  RAAIV  + LA L K+ GL 
Sbjct: 34  AHANHNERLEFLGDSILGVVIAEALFSRFPKVAEGDLSRMRAAIVCGRSLARLGKKKGLG 93

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSVL------- 926
           D++    G         +  +A+  EA++GA+FLD  +D   QV    F   L       
Sbjct: 94  DYLSLGQGELKSGGYRRESILADAMEAIIGAIFLDSDMDTVKQVVLGWFEEQLETIKPGA 153

Query: 927 -YKDNEVRFKQWMYYPQHPLQEQE 949
             KD + R ++W+   Q PL E +
Sbjct: 154 SQKDPKTRLQEWLQARQRPLPEYD 177


>gi|406920540|gb|EKD58587.1| hypothetical protein ACD_56C00093G0011 [uncultured bacterium]
          Length = 227

 Score = 87.4 bits (215), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/136 (36%), Positives = 84/136 (61%), Gaps = 2/136 (1%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E I + +L++ F +  EG L ++R+A+V  + LAH+A+ IG+E F
Sbjct: 37  LDHNERLEFLGDAVLELIITEYLYNNFRN-PEGELTSWRSALVNGEMLAHVAQEIGVEKF 95

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ-VFSSVLYKDNEVRFKQWM 938
           +L + G         ++ +AN  EA++GA +LD G +V+ + V  +V  +  E+  K+  
Sbjct: 96  LLMSRGEAKDTGRARQYLLANALEAIIGATYLDQGYEVSKKFVLGNVATQLKEILEKKLY 155

Query: 939 YYPQHPLQEQEPDGDR 954
             P+   QE+  + ++
Sbjct: 156 LDPKSYFQEKAQENNK 171



 Score = 46.6 bits (109), Expect = 0.069,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 2/51 (3%)

Query: 974  GVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            GV F++I LL +  T RS    N    L  N+RLEFLGD VL+LI ++YLY
Sbjct: 10   GVKFDNIELLRQAVTHRSYLNENRDYALDHNERLEFLGDAVLELIITEYLY 60


>gi|407459149|ref|YP_006737252.1| ribonuclease III [Chlamydia psittaci M56]
 gi|405785977|gb|AFS24722.1| ribonuclease III [Chlamydia psittaci M56]
          Length = 237

 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 65/104 (62%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           +ERLEFLGDAV+  I + HLF +FP ++EG L+T RAA++           +GL +++L 
Sbjct: 44  SERLEFLGDAVLCLIVTEHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEYLLI 103

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
             G  + +E     A AN FEA++GA++LDGG+  A Q+   +L
Sbjct: 104 GKGERIQNERGRTSAYANLFEAILGAVYLDGGLAPARQITVPLL 147


>gi|298242449|ref|ZP_06966256.1| ribonuclease III [Ktedonobacter racemifer DSM 44963]
 gi|297555503|gb|EFH89367.1| ribonuclease III [Ktedonobacter racemifer DSM 44963]
          Length = 227

 Score = 87.0 bits (214), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 20/164 (12%)

Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
           + NERLEFLGD+++  I++  L+  FPD+ EG L   RA +V+ + LA+ A+ I L +F+
Sbjct: 38  SSNERLEFLGDSILALISADFLYRTFPDLAEGELTDARAVLVRTETLANFARDINLSNFL 97

Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID------------VADQVFSSVLYK 928
           L   G    H    +  +A+ FEAL+GA++LD G+D            +A  +  + L+K
Sbjct: 98  LMGKGEQ--HSGGGQRVLASAFEALLGAIYLDQGLDAVQTFLLKRLEPLAHTIVRNRLFK 155

Query: 929 DNEVRFKQWM-----YYPQHPLQEQE-PDGDRQWVEQSPLLKQL 966
           DN+  F++         P + L  QE P  +R++  +  L +Q+
Sbjct: 156 DNKSLFQELAQAHDGITPSYRLVNQEGPSHNREFTIEVLLGEQV 199



 Score = 42.7 bits (99), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 969  LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG--SNQRLEFLGDTVLQLITSDYLY 1022
            LE    + F++  LL    T RS  Y     G  SN+RLEFLGD++L LI++D+LY
Sbjct: 5    LEAILDIQFHNPNLLTLALTHRSYIYEAAGEGRSSNERLEFLGDSILALISADFLY 60


>gi|329942692|ref|ZP_08291471.1| ribonuclease III [Chlamydophila psittaci Cal10]
 gi|332287287|ref|YP_004422188.1| ribonuclease III [Chlamydophila psittaci 6BC]
 gi|384450439|ref|YP_005663039.1| ribonuclease III [Chlamydophila psittaci 6BC]
 gi|384451441|ref|YP_005664039.1| ribonuclease III [Chlamydophila psittaci 01DC11]
 gi|384452414|ref|YP_005665011.1| ribonuclease III [Chlamydophila psittaci 08DC60]
 gi|384453390|ref|YP_005665986.1| ribonuclease III [Chlamydophila psittaci C19/98]
 gi|384454369|ref|YP_005666964.1| ribonuclease III [Chlamydophila psittaci 02DC15]
 gi|392376528|ref|YP_004064306.1| ribonuclease III [Chlamydophila psittaci RD1]
 gi|406593278|ref|YP_006740457.1| ribonuclease III [Chlamydia psittaci NJ1]
 gi|407456552|ref|YP_006735125.1| ribonuclease III [Chlamydia psittaci VS225]
 gi|407460523|ref|YP_006738298.1| ribonuclease III [Chlamydia psittaci WC]
 gi|313847871|emb|CBY16866.1| ribonuclease III [Chlamydophila psittaci RD1]
 gi|325506653|gb|ADZ18291.1| ribonuclease III [Chlamydophila psittaci 6BC]
 gi|328814952|gb|EGF84941.1| ribonuclease III [Chlamydophila psittaci Cal10]
 gi|328914533|gb|AEB55366.1| ribonuclease III [Chlamydophila psittaci 6BC]
 gi|334692171|gb|AEG85390.1| ribonuclease III [Chlamydophila psittaci C19/98]
 gi|334693151|gb|AEG86369.1| ribonuclease III [Chlamydophila psittaci 01DC11]
 gi|334694126|gb|AEG87343.1| ribonuclease III [Chlamydophila psittaci 02DC15]
 gi|334695103|gb|AEG88319.1| ribonuclease III [Chlamydophila psittaci 08DC60]
 gi|405783813|gb|AFS22560.1| ribonuclease III [Chlamydia psittaci VS225]
 gi|405787528|gb|AFS26272.1| ribonuclease III [Chlamydia psittaci WC]
 gi|405789150|gb|AFS27892.1| ribonuclease III [Chlamydia psittaci NJ1]
          Length = 237

 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 65/104 (62%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           +ERLEFLGDAV+  I + HLF +FP ++EG L+T RAA++           +GL +++L 
Sbjct: 44  SERLEFLGDAVLCLIVTEHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEYLLI 103

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
             G  + +E     A AN FEA++GA++LDGG+  A Q+   +L
Sbjct: 104 GKGERIQNERGRTSAYANLFEAILGAVYLDGGLAPARQITVPLL 147


>gi|355627640|ref|ZP_09049374.1| ribonuclease III [Clostridium sp. 7_3_54FAA]
 gi|354820195|gb|EHF04618.1| ribonuclease III [Clostridium sp. 7_3_54FAA]
          Length = 228

 Score = 87.0 bits (214), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 65/216 (30%), Positives = 93/216 (43%), Gaps = 53/216 (24%)

Query: 732 RSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIH 791
           + L  LE++  Y F NR LL  A+TH SY      N  H                     
Sbjct: 3   KKLMELEEKTGYHFNNRELLGRAMTHSSY-----ANECH--------------------- 36

Query: 792 FQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEE 851
                                    +S +  NERLEFLGDAV+E ++S  LFH FPD+ E
Sbjct: 37  -------------------------KSKLECNERLEFLGDAVLEIVSSDFLFHKFPDMPE 71

Query: 852 GGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFL 911
           G L   RA++V    LA+ A+ + L  ++L   G +          +++  EAL+GA++L
Sbjct: 72  GDLTKTRASMVCEPTLAYCAEELSLGKYLLLGKGEEATGGRNRNSVVSDAMEALIGAIYL 131

Query: 912 DGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
           DGG   A +     +  D E   K+  Y  +  LQE
Sbjct: 132 DGGFASAKEFIHKFILNDME--HKKLFYDSKTILQE 165



 Score = 47.8 bits (112), Expect = 0.034,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 6/63 (9%)

Query: 964  KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSD 1019
            K+L  LE  +G  FN+  LL R  T  S  Y N      L  N+RLEFLGD VL++++SD
Sbjct: 3    KKLMELEEKTGYHFNNRELLGRAMTHSS--YANECHKSKLECNERLEFLGDAVLEIVSSD 60

Query: 1020 YLY 1022
            +L+
Sbjct: 61   FLF 63


>gi|323484230|ref|ZP_08089599.1| hypothetical protein HMPREF9474_01350 [Clostridium symbiosum
           WAL-14163]
 gi|323692112|ref|ZP_08106358.1| ribonuclease III [Clostridium symbiosum WAL-14673]
 gi|323402472|gb|EGA94801.1| hypothetical protein HMPREF9474_01350 [Clostridium symbiosum
           WAL-14163]
 gi|323503835|gb|EGB19651.1| ribonuclease III [Clostridium symbiosum WAL-14673]
          Length = 228

 Score = 87.0 bits (214), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 65/216 (30%), Positives = 93/216 (43%), Gaps = 53/216 (24%)

Query: 732 RSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIH 791
           + L  LE++  Y F NR LL  A+TH SY      N  H                     
Sbjct: 3   KKLMELEEKTGYHFNNRELLGRAMTHSSY-----ANECH--------------------- 36

Query: 792 FQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEE 851
                                    +S +  NERLEFLGDAV+E ++S  LFH FPD+ E
Sbjct: 37  -------------------------KSKLECNERLEFLGDAVLEIVSSDFLFHKFPDMPE 71

Query: 852 GGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFL 911
           G L   RA++V    LA+ A+ + L  ++L   G +          +++  EAL+GA++L
Sbjct: 72  GDLTKTRASMVCEPTLAYCAEELSLGKYLLLGKGEEATGGRNRNSVVSDAMEALIGAIYL 131

Query: 912 DGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
           DGG   A +     +  D E   K+  Y  +  LQE
Sbjct: 132 DGGFASAKEFIHKFILNDME--HKKLFYDSKTILQE 165



 Score = 47.8 bits (112), Expect = 0.034,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 6/63 (9%)

Query: 964  KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSD 1019
            K+L  LE  +G  FN+  LL R  T  S  Y N      L  N+RLEFLGD VL++++SD
Sbjct: 3    KKLMELEEKTGYHFNNRELLGRAMTHSS--YANECHKSKLECNERLEFLGDAVLEIVSSD 60

Query: 1020 YLY 1022
            +L+
Sbjct: 61   FLF 63


>gi|407455171|ref|YP_006734062.1| ribonuclease III [Chlamydia psittaci GR9]
 gi|407457904|ref|YP_006736209.1| ribonuclease III [Chlamydia psittaci WS/RT/E30]
 gi|405781714|gb|AFS20463.1| ribonuclease III [Chlamydia psittaci GR9]
 gi|405785349|gb|AFS24095.1| ribonuclease III [Chlamydia psittaci WS/RT/E30]
          Length = 237

 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 65/104 (62%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           +ERLEFLGDAV+  I + HLF +FP ++EG L+T RAA++           +GL +++L 
Sbjct: 44  SERLEFLGDAVLCLIVTEHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEYLLI 103

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
             G  + +E     A AN FEA++GA++LDGG+  A Q+   +L
Sbjct: 104 GKGERIRNERGRTSAYANLFEAILGAVYLDGGLAPARQITVPLL 147


>gi|167745647|ref|ZP_02417774.1| hypothetical protein ANACAC_00339 [Anaerostipes caccae DSM 14662]
 gi|317472750|ref|ZP_07932063.1| ribonuclease III [Anaerostipes sp. 3_2_56FAA]
 gi|167654959|gb|EDR99088.1| ribonuclease III [Anaerostipes caccae DSM 14662]
 gi|316899776|gb|EFV21777.1| ribonuclease III [Anaerostipes sp. 3_2_56FAA]
          Length = 231

 Score = 87.0 bits (214), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/125 (41%), Positives = 73/125 (58%), Gaps = 2/125 (1%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E I S +LFH + D  EG L   RA++V    LA  AK + L D++L 
Sbjct: 44  NERLEFLGDAVLELIMSDYLFHTYKDEPEGKLTKMRASLVCEPTLAFCAKDLSLGDYLLL 103

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 942
           + G DL    E    +++ FEA++GA++LD G + A +   + L +D  V  K   Y  +
Sbjct: 104 SKGEDLTGGRERDSILSDAFEAVIGAVYLDQGFEEARKFVETYLLQD--VDEKVLFYDAK 161

Query: 943 HPLQE 947
             LQE
Sbjct: 162 TSLQE 166


>gi|383762960|ref|YP_005441942.1| ribonuclease III [Caldilinea aerophila DSM 14535 = NBRC 104270]
 gi|381383228|dbj|BAM00045.1| ribonuclease III [Caldilinea aerophila DSM 14535 = NBRC 104270]
          Length = 254

 Score = 86.7 bits (213), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 54/144 (37%), Positives = 80/144 (55%), Gaps = 7/144 (4%)

Query: 808 SKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHL 867
           S L      +  +  NERLEFLGDAV+ +I S  L+   PD  EG L   R+A+V+ + L
Sbjct: 31  SYLNELSGDKGQLLDNERLEFLGDAVLSYIFSEFLYLRHPDAREGRLTNLRSALVRRETL 90

Query: 868 AHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV----FS 923
           AHLA+++ L D++L  HG +          +   FEAL+GA++LD G+DV  +V    F+
Sbjct: 91  AHLARQLHLGDYLLLGHGEEESGGRHRPATLCATFEALIGAVYLDQGVDVCREVVVRLFA 150

Query: 924 SVLYKDNEVRFKQWMYYPQHPLQE 947
           + L K  ++   Q    P+  LQE
Sbjct: 151 AELEKLEQI---QESRDPKSRLQE 171



 Score = 43.1 bits (100), Expect = 0.79,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 8/63 (12%)

Query: 966  LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS------NQRLEFLGDTVLQLITSD 1019
            L  LE + G+ F++ +LL + F  RS  Y N   G       N+RLEFLGD VL  I S+
Sbjct: 6    LSTLEQALGITFHNKQLLQQAFVHRS--YLNELSGDKGQLLDNERLEFLGDAVLSYIFSE 63

Query: 1020 YLY 1022
            +LY
Sbjct: 64   FLY 66


>gi|317484890|ref|ZP_07943780.1| ribonuclease III [Bilophila wadsworthia 3_1_6]
 gi|316923872|gb|EFV45068.1| ribonuclease III [Bilophila wadsworthia 3_1_6]
          Length = 233

 Score = 86.7 bits (213), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 53/197 (26%)

Query: 733 SLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHF 792
           +L+VL+DRI Y+F++  LL LA+TH S+      N   A N+                  
Sbjct: 2   TLDVLQDRIGYRFKDESLLVLAVTHSSW-----ANEHSAGNA------------------ 38

Query: 793 QNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEG 852
                                        HNERLEFLGDAV+E   S  LF  FPD  EG
Sbjct: 39  -----------------------------HNERLEFLGDAVLEIAVSAQLFARFPDAREG 69

Query: 853 GLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLD 912
            L   R+++V    LA +A+++ L+D +  A G +     +    +++  EA+ G +F+D
Sbjct: 70  ELTRLRSSLVNEATLAVIARKLHLDDCLRLARGEENQGGRQRDSLLSDAMEAVFGGVFVD 129

Query: 913 GGIDVADQVFSSVLYKD 929
           GGI+ A  V    LY D
Sbjct: 130 GGIEKARAVVER-LYTD 145


>gi|384449689|ref|YP_005662291.1| ribonuclease III [Chlamydophila pneumoniae LPCoLN]
 gi|269302927|gb|ACZ33027.1| ribonuclease III [Chlamydophila pneumoniae LPCoLN]
          Length = 237

 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 68/113 (60%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I  +ERLEFLGDAV+  I + HLF +FP ++EG L+T RA++V  +        +G+ D+
Sbjct: 41  IEDSERLEFLGDAVLGLIVTEHLFLLFPSMDEGTLSTARASLVNAKACCRYTTTLGIGDY 100

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV 932
           +L   G  +  E     A AN FE+++GA++LDGG+  A ++   +L    E+
Sbjct: 101 LLIGKGEKIQSERGRLSAYANLFESILGAVYLDGGLSPARKLTVPLLPPREEI 153


>gi|326791395|ref|YP_004309216.1| ribonuclease III [Clostridium lentocellum DSM 5427]
 gi|326542159|gb|ADZ84018.1| ribonuclease III [Clostridium lentocellum DSM 5427]
          Length = 240

 Score = 86.7 bits (213), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 46/107 (42%), Positives = 66/107 (61%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           +  NERLEFLGDA+++ I S +LF   P++ EG L+  RA+IV    LA +A+ IGL ++
Sbjct: 49  VKDNERLEFLGDAILDLIISEYLFKKHPEMPEGDLSKIRASIVCEASLAKMARFIGLGEY 108

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           +L   G ++    E    +A+ FEAL GALFLDGG + A    +  L
Sbjct: 109 ILLGKGEEMTGGRERASILADGFEALTGALFLDGGFNEAKCFLTDTL 155


>gi|299754132|ref|XP_002911949.1| type III restriction enzyme [Coprinopsis cinerea okayama7#130]
 gi|298410618|gb|EFI28455.1| type III restriction enzyme [Coprinopsis cinerea okayama7#130]
          Length = 1457

 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 99/217 (45%), Gaps = 33/217 (15%)

Query: 823  NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML- 881
            N+RLE LGDAV++  T++HLF+ +P+  EG L T R A V N+ L   A  +GLE+++  
Sbjct: 974  NQRLETLGDAVLQLCTTVHLFNQYPNRHEGQLTTLRRATVSNKFLLQRALEMGLEEYITV 1033

Query: 882  ---------YAHGSDL-------CHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSV 925
                     Y  G D           +  + ++ +C EAL+GA FL GGI +A Q   S+
Sbjct: 1034 EIASVARWRYILGEDADTAPPRSVRTLVPRRSLQDCMEALLGASFLQGGIPMALQAGPSL 1093

Query: 926  LYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLAR 985
                  V F   + +        E   +R+   +         L+   G  F+   +L  
Sbjct: 1094 -----GVEFGGPLPW--------EMRYERKGPAEVATTHLFDTLQERLGYTFHSNSILVE 1140

Query: 986  VFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
              T  S         S QRLEFLGD +L L+   YLY
Sbjct: 1141 AVTHPSFATDG---PSYQRLEFLGDAILDLVVVHYLY 1174



 Score = 48.1 bits (113), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 22/113 (19%)

Query: 824  ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLA-KRIGLEDFMLY 882
            +RLEFLGDA+++ +   +L+  FP+     L+  RA ++    LA+LA K +G+   +L 
Sbjct: 1155 QRLEFLGDAILDLVVVHYLYEKFPEANSHQLSLLRAKVICAPTLAYLAIKELGVHKILLI 1214

Query: 883  AHGS-------------DLCHE--------VELKHAMANCFEALMGALFLDGG 914
             +               D+  E         +   A+++ FE+L+GA+ +D G
Sbjct: 1215 NNMGLYRAIEAYVPVFEDITDEEIARSYYKFDPPKAISDVFESLVGAVLVDSG 1267


>gi|15617978|ref|NP_224262.1| ribonuclease III [Chlamydophila pneumoniae CWL029]
 gi|15835590|ref|NP_300114.1| ribonuclease III [Chlamydophila pneumoniae J138]
 gi|16752990|ref|NP_445263.1| ribonuclease III [Chlamydophila pneumoniae AR39]
 gi|7531191|sp|Q9Z9C7.1|RNC_CHLPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|4376309|gb|AAD18207.1| Ribonuclease III [Chlamydophila pneumoniae CWL029]
 gi|7189635|gb|AAF38526.1| ribonuclease III [Chlamydophila pneumoniae AR39]
 gi|8978428|dbj|BAA98265.1| ribonuclease III [Chlamydophila pneumoniae J138]
          Length = 237

 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 68/113 (60%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I  +ERLEFLGDAV+  I + HLF +FP ++EG L+T RA++V  +        +G+ D+
Sbjct: 41  IEDSERLEFLGDAVLGLIVTEHLFLLFPSMDEGTLSTARASLVNAKACCRYTTMLGIGDY 100

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV 932
           +L   G  +  E     A AN FE+++GA++LDGG+  A ++   +L    E+
Sbjct: 101 LLIGKGEKIQSERGRLSAYANLFESILGAVYLDGGLSPARKLTVPLLPPREEI 153


>gi|335047086|ref|ZP_08540107.1| ribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
 gi|333760894|gb|EGL38449.1| ribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
          Length = 238

 Score = 86.7 bits (213), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 81/153 (52%), Gaps = 19/153 (12%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGD ++ F+ S+ L+  FP+ +EG L   R+ +V  +  ++ A+   L  ++L 
Sbjct: 47  NERLEFLGDVILGFVVSVELYSQFPNSDEGYLTKIRSKVVCEESFSYAARTFNLGKYLLL 106

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV-----FSSVLYKDNEVRF-KQ 936
             G D     +    +A+ FEAL GAL+LDGG+DV  ++     F +V+YK N+  F K 
Sbjct: 107 GKGEDHFGGRDRNSILADTFEALFGALYLDGGMDVVIEIANKYFFDTVVYKINKNIFIKD 166

Query: 937 WMYYPQHPLQ-------------EQEPDGDRQW 956
           +  Y Q                 E+ PD D+++
Sbjct: 167 YKSYLQEYFHKNASTKINYTLVAERGPDHDKEF 199


>gi|339443141|ref|YP_004709146.1| hypothetical protein CXIVA_20770 [Clostridium sp. SY8519]
 gi|338902542|dbj|BAK48044.1| hypothetical protein CXIVA_20770 [Clostridium sp. SY8519]
          Length = 230

 Score = 86.3 bits (212), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 86/189 (45%), Gaps = 51/189 (26%)

Query: 732 RSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIH 791
           + L  L+++I Y+FQ   LL+ ALTH SY      N  H                     
Sbjct: 2   KQLEELQEKINYRFQQEGLLRQALTHSSY-----ANEKH--------------------- 35

Query: 792 FQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEE 851
               +KR                      + NERLEFLGDAV+E ++S  L+  + D+ E
Sbjct: 36  ---MKKR----------------------SDNERLEFLGDAVLELVSSDWLYSRYTDVPE 70

Query: 852 GGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFL 911
           G L   RA+IV    LA L+++I L  ++    G DL         +++ FEA++GA++L
Sbjct: 71  GELTKKRASIVCEPSLAFLSRKIDLGRYLFLGKGEDLTGGRRRPSVLSDAFEAVIGAIYL 130

Query: 912 DGGIDVADQ 920
           DGG   A Q
Sbjct: 131 DGGFSAARQ 139


>gi|15835187|ref|NP_296946.1| ribonuclease III [Chlamydia muridarum Nigg]
 gi|270285359|ref|ZP_06194753.1| ribonuclease III [Chlamydia muridarum Nigg]
 gi|270289375|ref|ZP_06195677.1| ribonuclease III [Chlamydia muridarum Weiss]
 gi|301336756|ref|ZP_07224958.1| ribonuclease III [Chlamydia muridarum MopnTet14]
 gi|13878715|sp|Q9PK97.1|RNC_CHLMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|7190609|gb|AAF39406.1| ribonuclease III [Chlamydia muridarum Nigg]
          Length = 232

 Score = 86.3 bits (212), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 55/220 (25%)

Query: 730 FHRSLNV--LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGD 787
             R++N+  +E ++++ F    LL  ALTHPSYR  F   P    +S             
Sbjct: 1   MQRTVNIQAVESKLKFTFSQPRLLVTALTHPSYRNEF---PSDGEDS------------- 44

Query: 788 RRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFP 847
                                               ERLEFLGDAV+  + + HLF +FP
Sbjct: 45  ------------------------------------ERLEFLGDAVLGLVVTEHLFLLFP 68

Query: 848 DIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMG 907
            + EG L+T R+A+V  +   +  +++ L + +L   G  +        A AN FEA++G
Sbjct: 69  SLNEGLLSTTRSALVNAEACFNYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLFEAILG 128

Query: 908 ALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
           A++LDGG+  A Q+   +L  + E      +  P++ LQ+
Sbjct: 129 AVYLDGGLAPARQIIVPLL-PNKEAILPLMLVNPKNRLQQ 167


>gi|256830196|ref|YP_003158924.1| ribonuclease III [Desulfomicrobium baculatum DSM 4028]
 gi|256579372|gb|ACU90508.1| ribonuclease III [Desulfomicrobium baculatum DSM 4028]
          Length = 242

 Score = 86.3 bits (212), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/104 (43%), Positives = 63/104 (60%)

Query: 815 ATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI 874
           A E    HNERLEFLGDAV+E   S  LF  FP+++EG L   R+A+V    LA  A+RI
Sbjct: 37  ANEHGCPHNERLEFLGDAVLELAVSQELFRKFPEVQEGHLTKMRSALVSEGALAQAARRI 96

Query: 875 GLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
            L   +L   G D+    E    +++  EA++GA++LDGG++ A
Sbjct: 97  HLGACLLLGRGEDVQGGREKNSVLSDALEAVLGAVYLDGGLERA 140


>gi|33241390|ref|NP_876331.1| ribonuclease III [Chlamydophila pneumoniae TW-183]
 gi|33235898|gb|AAP97988.1| ribonuclease III [Chlamydophila pneumoniae TW-183]
          Length = 237

 Score = 86.3 bits (212), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 68/113 (60%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I  +ERLEFLGDAV+  I + HLF +FP ++EG L+T RA++V  +        +G+ D+
Sbjct: 41  IEDSERLEFLGDAVLGLIVTEHLFLLFPSMDEGTLSTARASLVNAKACCRYTTVLGIGDY 100

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV 932
           +L   G  +  E     A AN FE+++GA++LDGG+  A ++   +L    E+
Sbjct: 101 LLIGKGEKIQSERGRLSAYANLFESILGAVYLDGGLSPARKLTVPLLPPREEI 153


>gi|302386299|ref|YP_003822121.1| ribonuclease III [Clostridium saccharolyticum WM1]
 gi|302196927|gb|ADL04498.1| ribonuclease III [Clostridium saccharolyticum WM1]
          Length = 233

 Score = 86.3 bits (212), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 98/216 (45%), Gaps = 53/216 (24%)

Query: 732 RSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIH 791
           R+L  LE+RI Y+F +R+L+  A+TH SY        +H  N L  C             
Sbjct: 3   RNLKELEERIGYRFSDRHLMTQAMTHSSYAN------EHRLNKL-EC------------- 42

Query: 792 FQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEE 851
                                          NERLEFLGD+V+E ++S  L+H +P+  E
Sbjct: 43  -------------------------------NERLEFLGDSVLEVVSSDCLYHKYPEKPE 71

Query: 852 GGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFL 911
           G L   RA+IV    LA+ A+ I L +++L   G +          +++  EAL+GA++L
Sbjct: 72  GDLTKIRASIVCEPTLAYCAESIRLGEYLLLGKGEEATGGRGRASIVSDAMEALIGAIYL 131

Query: 912 DGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
           DGG   A +     +   N++  KQ  Y  +  LQE
Sbjct: 132 DGGFANAKEFILRFIM--NDLEHKQLFYDSKTILQE 165


>gi|167040357|ref|YP_001663342.1| ribonuclease III [Thermoanaerobacter sp. X514]
 gi|256750709|ref|ZP_05491594.1| ribonuclease III [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914441|ref|ZP_07131757.1| ribonuclease III [Thermoanaerobacter sp. X561]
 gi|307724323|ref|YP_003904074.1| ribonuclease III [Thermoanaerobacter sp. X513]
 gi|166854597|gb|ABY93006.1| Ribonuclease III [Thermoanaerobacter sp. X514]
 gi|256750292|gb|EEU63311.1| ribonuclease III [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889376|gb|EFK84522.1| ribonuclease III [Thermoanaerobacter sp. X561]
 gi|307581384|gb|ADN54783.1| ribonuclease III [Thermoanaerobacter sp. X513]
          Length = 246

 Score = 86.3 bits (212), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 65/245 (26%), Positives = 109/245 (44%), Gaps = 70/245 (28%)

Query: 733 SLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHF 792
           +L+ LE+RI Y F+++ LL  ALTH S+                                
Sbjct: 19  NLSELEERINYSFKDKNLLIEALTHSSWAH------------------------------ 48

Query: 793 QNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEG 852
                 G N+ I+                 NERLEFLGD+V+  + S +L+    D+EEG
Sbjct: 49  -----EGKNSKIS-----------------NERLEFLGDSVLSLVISEYLYKNRKDLEEG 86

Query: 853 GLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLD 912
            L+ YRA IV    LA  A+ I L +F+    G +L    E    +A+  EA++ A++LD
Sbjct: 87  SLSKYRAEIVCEPSLARCAREIELGNFLRIGKGEELTGGRERDSILADAMEAILAAVYLD 146

Query: 913 GGIDVA------------DQVFSSVLYKDNEVRFKQWMYYPQ------HPLQEQEPDGDR 954
           GG++V             ++V   ++Y+D + + ++ +   +        ++E  PD ++
Sbjct: 147 GGLEVVRNVILELFKNIIEEVLEGLIYRDYKTKLQEVVQSMEIGKIIYELIEEMGPDHNK 206

Query: 955 QWVEQ 959
            +V Q
Sbjct: 207 TFVTQ 211


>gi|406949445|gb|EKD79928.1| Ribonuclease III [uncultured bacterium]
          Length = 231

 Score = 86.3 bits (212), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 80/157 (50%), Gaps = 22/157 (14%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLE+LGDAV+E I S +LF  +PD +EG L   RAA+V+ + LA +A  +G    +L 
Sbjct: 43  NERLEYLGDAVLELIVSQYLFESYPDFQEGMLTNLRAALVRTESLALVATELGFPPLLLM 102

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL------------YKDN 930
           + G +     +    +A+ FEA +GAL+LD G+    Q+    L            YKDN
Sbjct: 103 SKGEEATGGRQNISILADTFEAFLGALYLDQGLVPCQQILEVHLLPQTKTILKTQAYKDN 162

Query: 931 --------EVRFKQWMYYPQHPLQEQEPDGDRQWVEQ 959
                   + R+K    Y    L E  PD D+ +V Q
Sbjct: 163 KSLLQEIAQARYKATPLYSL--LTESGPDHDKNFVMQ 197


>gi|229086402|ref|ZP_04218578.1| Ribonuclease 3 [Bacillus cereus Rock3-44]
 gi|228696918|gb|EEL49727.1| Ribonuclease 3 [Bacillus cereus Rock3-44]
          Length = 245

 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 75/157 (47%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAAIV    L   A  +   + +L 
Sbjct: 57  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGNLVLL 116

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G+D        ++Y K NE  F   M Y 
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLDTVWGFLKEIVYPKINEGAFSHVMDYK 176

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213


>gi|404482777|ref|ZP_11018002.1| ribonuclease III [Clostridiales bacterium OBRC5-5]
 gi|404343867|gb|EJZ70226.1| ribonuclease III [Clostridiales bacterium OBRC5-5]
          Length = 232

 Score = 85.9 bits (211), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 101/235 (42%), Gaps = 53/235 (22%)

Query: 731 HRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRI 790
           + +LN L++ + Y+++N+ LL  ALTH SY                              
Sbjct: 2   NNNLNELQELLGYEYKNKELLSQALTHSSY------------------------------ 31

Query: 791 HFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIE 850
              N  + G N                     NERLEFLGDAV+E ++S   + V+PD  
Sbjct: 32  --ANEHQLGKNG-------------------SNERLEFLGDAVLELVSSEFFYGVYPDKP 70

Query: 851 EGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALF 910
           EG L   RA  V    LA  AK I L  F+    G +          +++ FEAL+G+++
Sbjct: 71  EGELTKIRAGFVCEAALADCAKNIKLSKFLKLGKGEEHTGGRMRPSIISDAFEALIGSIY 130

Query: 911 LDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQ 965
           LDGG   A +V    +   NE   K + Y  +  LQE     D + VE +P+ ++
Sbjct: 131 LDGGFANAKEVILKFIL--NEYENKVFFYDSKTILQEVIQSQDSKSVEYTPISEE 183


>gi|402313792|ref|ZP_10832702.1| ribonuclease III [Lachnospiraceae bacterium ICM7]
 gi|400365574|gb|EJP18625.1| ribonuclease III [Lachnospiraceae bacterium ICM7]
          Length = 232

 Score = 85.9 bits (211), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 101/235 (42%), Gaps = 53/235 (22%)

Query: 731 HRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRI 790
           + +LN L++ + Y+++N+ LL  ALTH SY                              
Sbjct: 2   NNNLNELQELLGYEYKNKELLNQALTHSSY------------------------------ 31

Query: 791 HFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIE 850
              N  + G N                     NERLEFLGDAV+E ++S   + V+PD  
Sbjct: 32  --ANEHQLGKNG-------------------SNERLEFLGDAVLELVSSEFFYGVYPDKP 70

Query: 851 EGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALF 910
           EG L   RA  V    LA  AK I L  F+    G +          +++ FEAL+G+++
Sbjct: 71  EGELTKIRAGFVCEAALADCAKNIKLSKFLKLGKGEEHTGGRMRPSIISDAFEALIGSIY 130

Query: 911 LDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQ 965
           LDGG   A +V    +   NE   K + Y  +  LQE     D + VE +P+ ++
Sbjct: 131 LDGGFANAKEVILKFIL--NEYENKVFFYDSKTILQEVIQSQDSKSVEYTPISEE 183


>gi|406929146|gb|EKD64813.1| hypothetical protein ACD_50C00299G0001 [uncultured bacterium]
          Length = 226

 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 68/107 (63%), Gaps = 1/107 (0%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNER EFLGDAV+E I + HL+  +P+  EG L  +R+A+V+ + ++ ++ ++G ED++ 
Sbjct: 40  HNERFEFLGDAVLELIVTEHLYRNYPN-PEGDLTNWRSALVKTETISDVSGKLGFEDYLF 98

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 928
            + G         +  +ANCFEA++GA++LD G   A++  +  + K
Sbjct: 99  LSRGESKSRGRARQLILANCFEAVIGAIYLDKGYKEANKFITENILK 145


>gi|291563451|emb|CBL42267.1| RNAse III [butyrate-producing bacterium SS3/4]
          Length = 226

 Score = 85.9 bits (211), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/125 (38%), Positives = 72/125 (57%), Gaps = 2/125 (1%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E I+S  LFH +  + EG +   RA++V    LA+ A  I L D++L 
Sbjct: 43  NERLEFLGDAVLEVISSDFLFHTYESMPEGEMTKLRASLVCEPTLAYCADVIPLGDYLLL 102

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 942
             G DL    +    +++  EA++GA++LDGG+  A +     +   N++  KQ  Y  +
Sbjct: 103 GKGEDLTGGRKRPSVVSDAMEAVIGAIYLDGGLANAKEFIHRFIL--NDIEHKQLFYDSK 160

Query: 943 HPLQE 947
             LQE
Sbjct: 161 TILQE 165


>gi|302338403|ref|YP_003803609.1| ribonuclease III [Spirochaeta smaragdinae DSM 11293]
 gi|301635588|gb|ADK81015.1| ribonuclease III [Spirochaeta smaragdinae DSM 11293]
          Length = 244

 Score = 85.9 bits (211), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 21/168 (12%)

Query: 812 RKVATE--SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAH 869
           R  A E  +N+ +NE+LEFLGD+V+  + S +LF + PD  EG LA  ++ +V    LA 
Sbjct: 41  RSFANEQGTNVDNNEKLEFLGDSVLGLVVSEYLFALLPDKAEGDLARVKSFVVSEDSLAE 100

Query: 870 LAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA----------- 918
           +A++I +++++L   G +       K  +A+C EA++G+ +LD G   A           
Sbjct: 101 IARKIKVDNYILIGKGEEYSGGRNKKAILADCMEAIIGSFYLDSGFKAARSFVLKYLIPE 160

Query: 919 -DQVFSSVLYKD-----NEVRFKQWMYYPQHPL-QEQEPDGDRQ-WVE 958
            ++V  +   KD      E   KQ+  YP++ L ++  PD DR  W+E
Sbjct: 161 INKVLENRHKKDYKTLLQEYVQKQFKSYPRYSLVKKTGPDHDRTFWIE 208



 Score = 45.1 bits (105), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 964  KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT-LGSNQRLEFLGDTVLQLITSDYLY 1022
            ++LQ  E   G+ F  +  L   F+ RS      T + +N++LEFLGD+VL L+ S+YL+
Sbjct: 15   RELQLFEKHVGIRFRKLEFLNLAFSHRSFANEQGTNVDNNEKLEFLGDSVLGLVVSEYLF 74


>gi|42523419|ref|NP_968799.1| ribonuclease III [Bdellovibrio bacteriovorus HD100]
 gi|81617308|sp|Q6MLR5.1|RNC_BDEBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|39575625|emb|CAE79792.1| ribonuclease III [Bdellovibrio bacteriovorus HD100]
          Length = 234

 Score = 85.9 bits (211), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 83/182 (45%), Gaps = 52/182 (28%)

Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
           LE+R+ ++F+N  LL+ ALTH S+            N L N                   
Sbjct: 9   LEERVGHQFKNPALLERALTHKSFA-----------NELRN------------------- 38

Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
                                  + HNE+LEFLGDAV++ +    L+  FP   EGGL+ 
Sbjct: 39  ----------------------TVEHNEKLEFLGDAVLDLVVGEFLYEKFPTDTEGGLSK 76

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            RA+IV  + L+ LA  +GL   M    G  L    +    +A+ FEA++GAL+LDGG +
Sbjct: 77  KRASIVNEEVLSELALEMGLNKLMQLGKGEALTGGAQKPRLIASSFEAIVGALYLDGGFE 136

Query: 917 VA 918
           VA
Sbjct: 137 VA 138


>gi|385810564|ref|YP_005846960.1| dsRNA-specific ribonuclease [Ignavibacterium album JCM 16511]
 gi|383802612|gb|AFH49692.1| dsRNA-specific ribonuclease [Ignavibacterium album JCM 16511]
          Length = 258

 Score = 85.5 bits (210), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/100 (48%), Positives = 63/100 (63%), Gaps = 1/100 (1%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+  IT+ +LFH++PD +EG L   RA IV    LA  A+ IGL  F+L 
Sbjct: 69  NERLEFLGDAVLSLITAEYLFHLYPDKDEGFLTKVRAKIVNRNSLADSAEEIGLVKFLLI 128

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
                       K  +++ FEAL+GAL+LD G+D A +VF
Sbjct: 129 NQNLSNTFSRGAKTVLSDAFEALVGALYLDQGLD-AGRVF 167


>gi|29840106|ref|NP_829212.1| ribonuclease III [Chlamydophila caviae GPIC]
 gi|33301541|sp|Q823R4.1|RNC_CHLCV RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|29834454|gb|AAP05090.1| ribonuclease III [Chlamydophila caviae GPIC]
          Length = 237

 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 85/166 (51%), Gaps = 14/166 (8%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           +ERLEFLGDAV+  I + HLF +FP ++EG L+T RAA++           +GL + +L 
Sbjct: 44  SERLEFLGDAVLCLIVTEHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEHLLI 103

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 942
             G  + +E     A AN FEA++GA++LDGG+  A Q+   +L    ++          
Sbjct: 104 GKGERIQNERGRTSAYANLFEAVLGAVYLDGGLAPARQITVPLLPSKKDIL--------- 154

Query: 943 HPLQEQEPDGDRQWVEQSPL--LKQLQYLEYSS--GVIFNHIRLLA 984
            PL    P    Q + Q  L  L   Q   ++S  GV   HIR++ 
Sbjct: 155 -PLMLGNPKNRLQQLTQKQLRTLPVYQCTPWTSQQGVPGYHIRVIV 199


>gi|328772805|gb|EGF82843.1| hypothetical protein BATDEDRAFT_23044 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1492

 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 112/234 (47%), Gaps = 20/234 (8%)

Query: 803  LINIMSKLGRKVATESNITHN-ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAI 861
             INI +     VA+ +++ ++ ERLE LGD+ ++   S+HLF + P  +EG L T R   
Sbjct: 1048 FINIETLQTVLVASSTDLPYSYERLEILGDSFLKIHQSLHLFALNPSQDEGWLTTSRMVA 1107

Query: 862  VQNQHLAHLAKRIGLEDFMLY-----------AHGSDLCHEVELKHAMANCFEALMGALF 910
             QN  L   A  +GL+  +L            A G D    +  K  +A+  EA++G   
Sbjct: 1108 EQNLELCRRATEVGLQGLILTTRFSRKQWVPPAKGHDSMQSMP-KKILADVTEAIIGGCL 1166

Query: 911  LDGGIDVADQVFSSVLYKDNEVRFKQW-MYYPQHPLQEQ-EPDGDRQWVEQSPLLKQLQY 968
            +DGGI  A +   S+L +D +    +W +Y+ Q+ L     P    +++     L  L+ 
Sbjct: 1167 IDGGIVGASEAVRSLLNRDYQ---SEWGLYFTQYQLHRNVTPSHLVRFIGDIDSLVTLR- 1222

Query: 969  LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            +E      F    +L    T  S  ++   L + QRLEFLGD VL  I + YLY
Sbjct: 1223 IEAVLNYTFQDKSILWEALTHSSSSFSICGL-NYQRLEFLGDAVLSFIITKYLY 1275



 Score = 47.4 bits (111), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 26/120 (21%)

Query: 824  ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM--- 880
            +RLEFLGDAV+ FI + +L+        G ++  ++ +V NQ LA ++ R+GL D++   
Sbjct: 1256 QRLEFLGDAVLSFIITKYLYTQLGSSSPGVISHLKSEMVCNQFLACVSIRLGLIDWLRVK 1315

Query: 881  ---------LYAHG--------SDLCHEVELKHAM------ANCFEALMGALFLDGGIDV 917
                      YA          +D   ++   H         + +EA++GA+F+D    +
Sbjct: 1316 KSDTVWIVDAYAQQVIEHLSQPADSIQKIFWAHMTTAPKICGDVYEAILGAIFVDSKFSI 1375


>gi|152976215|ref|YP_001375732.1| ribonuclease III [Bacillus cytotoxicus NVH 391-98]
 gi|189043291|sp|A7GRH9.1|RNC_BACCN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|152024967|gb|ABS22737.1| Ribonuclease III [Bacillus cytotoxicus NVH 391-98]
          Length = 245

 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAAIV    L   A  +     +L 
Sbjct: 57  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 116

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G+D        ++Y K NE  F   M Y 
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLDTVWGFLKEIVYPKINEGAFSHVMDYK 176

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213


>gi|330444350|ref|YP_004377336.1| ribonuclease III [Chlamydophila pecorum E58]
 gi|328807460|gb|AEB41633.1| ribonuclease III [Chlamydophila pecorum E58]
          Length = 231

 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 14/168 (8%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I  +ERLEFLGDAV+  I + HLF +FP++EEG L+T RA++V     +  A+ +G+ + 
Sbjct: 41  IEDSERLEFLGDAVLGLIVTEHLFLLFPNLEEGVLSTIRASLVDASACSGYAESLGVCEN 100

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMY 939
           +L   G  L ++     + AN FEA++GA++LDGG+  A Q+   +L    +++      
Sbjct: 101 LLIGKGERLQNQRGKLSSQANLFEAILGAIYLDGGLSPARQLTVPLLPSKEKLQ------ 154

Query: 940 YPQHPLQEQEPDGDRQWVEQSPL--LKQLQYLEYSS--GVIFNHIRLL 983
               PL    P    Q   Q  L  L + Q  +Y S  GV+ +H+++ 
Sbjct: 155 ----PLMFGNPKNLLQQFTQKHLRTLPKYQATQYVSKEGVMSHHVQVF 198


>gi|406926424|gb|EKD62651.1| hypothetical protein ACD_52C00102G0008 [uncultured bacterium]
          Length = 224

 Score = 85.1 bits (209), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 81/159 (50%), Gaps = 13/159 (8%)

Query: 802 TLINIMSKLGRKVATESNITH-------------NERLEFLGDAVVEFITSIHLFHVFPD 848
           T+  + +    K+  E+ +TH             NERLEFLGDA++EF  S  L+ + PD
Sbjct: 2   TIEEVKTSFSNKLLFETAMTHRSWLNENGKSRASNERLEFLGDAILEFAVSAFLYDLLPD 61

Query: 849 IEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGA 908
            EEG L   RA +V   +LA +A ++ L   +  + G +     E    +A+  EAL+GA
Sbjct: 62  KEEGFLTAIRANLVNTVNLASIANKLKLGTELYLSRGEEAGGGRENTSLLADTVEALIGA 121

Query: 909 LFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
           L+LD G+D A +    VL  D + +  Q +   +  LQE
Sbjct: 122 LYLDQGLDAARKFIKDVLLFDIDEKLSQPLKDAKSALQE 160


>gi|170043311|ref|XP_001849336.1| ribonuclease iii [Culex quinquefasciatus]
 gi|167866692|gb|EDS30075.1| ribonuclease iii [Culex quinquefasciatus]
          Length = 172

 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/49 (79%), Positives = 44/49 (89%)

Query: 850 EEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAM 898
           E GGLATYRAAIVQNQHLA LAK++ LE FMLYAH SDLCHE+EL+HA+
Sbjct: 13  EVGGLATYRAAIVQNQHLAVLAKKLYLEKFMLYAHESDLCHELELRHAL 61


>gi|154483581|ref|ZP_02026029.1| hypothetical protein EUBVEN_01285 [Eubacterium ventriosum ATCC
           27560]
 gi|149735491|gb|EDM51377.1| ribonuclease III [Eubacterium ventriosum ATCC 27560]
          Length = 190

 Score = 85.1 bits (209), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/126 (38%), Positives = 75/126 (59%), Gaps = 2/126 (1%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E ++S +L+    D+ EG +   RA++V    LA  A+ I LEDF+  
Sbjct: 4   NERLEFLGDAVLELLSSEYLYKNMKDMPEGKMTKLRASLVCEPTLAMDAREIDLEDFIYL 63

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 942
             G D     +    +++ FEAL+GA+FLDGGI+ A   +  + +  N++  K+  Y  +
Sbjct: 64  GKGEDETGGRKRDSIVSDAFEALIGAIFLDGGIEEAK--YFILKFALNDIEKKKLFYDSK 121

Query: 943 HPLQEQ 948
             LQE+
Sbjct: 122 TVLQER 127


>gi|357236837|ref|ZP_09124180.1| ribonuclease III [Streptococcus criceti HS-6]
 gi|356884819|gb|EHI75019.1| ribonuclease III [Streptococcus criceti HS-6]
          Length = 230

 Score = 85.1 bits (209), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/136 (36%), Positives = 72/136 (52%), Gaps = 4/136 (2%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDAV++ + S +LF  FP   EG L+  R+ IV+ + LA  +K  G E 
Sbjct: 39  NISHNERLEFLGDAVLQLLISRYLFAKFPKKPEGDLSKMRSMIVREESLAGFSKDCGFES 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV----RF 934
           F+    G +     + +  + + FEA +GAL LD GI   ++  + V+    E     R 
Sbjct: 99  FIKLGKGEEKSGGRDRETILGDLFEAFLGALDLDQGISAVEKFLNQVMIPKVEAGDYERV 158

Query: 935 KQWMYYPQHPLQEQEP 950
           K +    Q  LQ   P
Sbjct: 159 KDYKTALQEKLQVNGP 174



 Score = 44.3 bits (103), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 6/58 (10%)

Query: 969  LEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            L+   G++F    LL   FT  S  Y N    L +  N+RLEFLGD VLQL+ S YL+
Sbjct: 8    LQADFGIVFKDSSLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISRYLF 63


>gi|242309254|ref|ZP_04808409.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489]
 gi|239524295|gb|EEQ64161.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489]
          Length = 224

 Score = 85.1 bits (209), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 2/136 (1%)

Query: 791 HFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIE 850
           HFQ T          +   L  K A +S  THNERLEFLGDAV++ I    L+  FP   
Sbjct: 5   HFQQTLGYHFKNQNLLKEALTHKSAKKS--THNERLEFLGDAVLDLIIGEFLYKKFPSSP 62

Query: 851 EGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALF 910
           EG L+  RA++V  +  A +A+ +G+ +++  +H  +  H  +    ++N FEA++GA++
Sbjct: 63  EGELSKMRASMVNEKAFAKIARYLGIGEYLFISHSEEQNHGRDKDSILSNAFEAIIGAIY 122

Query: 911 LDGGIDVADQVFSSVL 926
           L+ G++   ++   +L
Sbjct: 123 LESGLEKVQKIVLKIL 138


>gi|406881398|gb|EKD29472.1| hypothetical protein ACD_78C00391G0002 [uncultured bacterium (gcode
           4)]
          Length = 248

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/92 (46%), Positives = 61/92 (66%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E IT+  LFH FPD  E  L   R+A+V+ ++LA +   +GL +++L 
Sbjct: 54  NERLEFLGDAVLELITTELLFHAFPDKPEWELTDIRSALVRGKNLAAIGLTLGLPEYILL 113

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGG 914
           + G +L       + +AN FEA +GAL+LD G
Sbjct: 114 SKGEELAGGSTNPYIVANTFEAFLGALYLDLG 145


>gi|225025907|ref|ZP_03715099.1| hypothetical protein EUBHAL_00143 [Eubacterium hallii DSM 3353]
 gi|224956693|gb|EEG37902.1| ribonuclease III [Eubacterium hallii DSM 3353]
          Length = 232

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 65/211 (30%), Positives = 93/211 (44%), Gaps = 53/211 (25%)

Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
           LE++I Y F N+  L LA+TH SY                                    
Sbjct: 10  LEEKIGYTFTNKRTLALAMTHSSYAN---------------------------------- 35

Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
                       + GR+ A      +NERLEFLGDAV+E   S ++F  +P   EG L  
Sbjct: 36  -----------EQRGRRKA------NNERLEFLGDAVLEVTISDYVFREYPGYNEGRLTK 78

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            R+++V    LA  A+ + L  ++L + G D     E    +++ FEAL+GA++LDGG+D
Sbjct: 79  LRSSLVCEYTLAICARDVELGKYLLLSRGEDATGGRERDSILSDAFEALIGAIYLDGGMD 138

Query: 917 VADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
            A     + L KD  V  K   Y  +  LQE
Sbjct: 139 RARTFIHTHLLKD--VEDKSLFYDAKTILQE 167


>gi|418323820|ref|ZP_12935082.1| ribonuclease III [Staphylococcus pettenkoferi VCU012]
 gi|365229166|gb|EHM70329.1| ribonuclease III [Staphylococcus pettenkoferi VCU012]
          Length = 243

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 67/117 (57%), Gaps = 3/117 (2%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   S +LF  +PD+ EG L   RA IV    L   A +I L + 
Sbjct: 52  LEHNERLEFLGDAVLELTVSRYLFDKYPDLPEGNLTKMRATIVCEPSLVIFANKINLNEL 111

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY---KDNEVR 933
           +L   G +          +++ FEA +GAL+LD G+ V +Q    V++   +D+E++
Sbjct: 112 ILLGKGEEKTGGRTRPSLVSDAFEAFVGALYLDQGLTVVNQFAQQVIFPYVEDDELQ 168


>gi|225419776|ref|ZP_03762079.1| hypothetical protein CLOSTASPAR_06114 [Clostridium asparagiforme
           DSM 15981]
 gi|225041580|gb|EEG51826.1| hypothetical protein CLOSTASPAR_06114 [Clostridium asparagiforme
           DSM 15981]
          Length = 232

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 70/125 (56%), Gaps = 2/125 (1%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E +TS  L+H + D+ EG L   RA+IV    LA+ A  I L +++L 
Sbjct: 43  NERLEFLGDAVLEIVTSDFLYHKYEDLPEGDLTKIRASIVCEPTLAYCAGDISLGEYLLL 102

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 942
             G +          +++  EAL+GA++LDGG   A +     +   N++  KQ  Y  +
Sbjct: 103 GKGEEATGGRSRNSVVSDAMEALIGAIYLDGGFANAKEFIHRFIL--NDIEHKQLFYDSK 160

Query: 943 HPLQE 947
             LQE
Sbjct: 161 TILQE 165



 Score = 40.0 bits (92), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 15/21 (71%), Positives = 20/21 (95%)

Query: 1002 NQRLEFLGDTVLQLITSDYLY 1022
            N+RLEFLGD VL+++TSD+LY
Sbjct: 43   NERLEFLGDAVLEIVTSDFLY 63


>gi|407005250|gb|EKE21424.1| hypothetical protein ACD_7C00251G0010 [uncultured bacterium]
          Length = 229

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 87/155 (56%), Gaps = 18/155 (11%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E I + +LF  + + +EG + ++RAA+V  + LA ++  + ++++
Sbjct: 38  LNHNERLEFLGDAVLELIVTDYLFKNYSNNQEGEMTSWRAALVNGEMLAKISAELKVDEY 97

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLY 927
           +L + G         ++ +AN  EA++GA++LD G  VA            D V ++ LY
Sbjct: 98  VLMSRGESSDKGRARQYLLANALEAIIGAIYLDQGYGVAEKFILENVVTKIDNVIANKLY 157

Query: 928 KDNEVRF--KQWMYYPQHP----LQEQEPDGDRQW 956
            D +  F  K   ++   P    L+E+ PD D+ +
Sbjct: 158 LDPKSYFQEKSQEHFKMTPSYRILKEEGPDHDKNF 192



 Score = 45.1 bits (105), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 972  SSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            S G+ FN+  L+    T RS    N    L  N+RLEFLGD VL+LI +DYL+
Sbjct: 9    SIGIEFNNPDLIQEALTHRSYLNENKKYKLNHNERLEFLGDAVLELIVTDYLF 61


>gi|312127786|ref|YP_003992660.1| ribonuclease iii [Caldicellulosiruptor hydrothermalis 108]
 gi|311777805|gb|ADQ07291.1| ribonuclease III [Caldicellulosiruptor hydrothermalis 108]
          Length = 222

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/117 (37%), Positives = 72/117 (61%)

Query: 810 LGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAH 869
           L  K AT SN    ERLEFLGDA +E + S +LF  FPD+ EG L   RAA+V +Q L+ 
Sbjct: 22  LTHKSATHSNKNCYERLEFLGDAALELVVSKYLFVNFPDLSEGELTNIRAAVVCSQTLSE 81

Query: 870 LAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           +A+++ L++ +++     +    E K  +A+  EA+ GA+F++ G D  +++  ++L
Sbjct: 82  VAEKLNLKNHIIFGKREKMEKFHENKSILADVLEAIFGAIFIESGFDKLEKIIVNLL 138


>gi|159898112|ref|YP_001544359.1| ribonuclease III [Herpetosiphon aurantiacus DSM 785]
 gi|159891151|gb|ABX04231.1| Ribonuclease III [Herpetosiphon aurantiacus DSM 785]
          Length = 234

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 62/102 (60%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           E+    NERLEFLGDA++ FI    LFH FP++ EG L   RA +VQ + LA LA+R  L
Sbjct: 35  EAGSESNERLEFLGDALLNFICGSFLFHEFPELGEGDLTKTRAMLVQTRTLAGLARRFNL 94

Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
             ++  + G +     E  + +A+ FEAL+ A+ LDGG + A
Sbjct: 95  GSYVQISRGEERAKARERDNLLADAFEALLAAIALDGGWEAA 136


>gi|90412086|ref|ZP_01220093.1| ribonuclease III [Photobacterium profundum 3TCK]
 gi|90327064|gb|EAS43443.1| ribonuclease III [Photobacterium profundum 3TCK]
          Length = 224

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 64/107 (59%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N THNERLEFLGD+++ F+ +  L+H FP ++EG ++  RA +V+ + LA L +   L 
Sbjct: 31  ANGTHNERLEFLGDSILSFVIADDLYHRFPHVDEGDMSRMRATLVRGKTLAELGREFELG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS 924
           D++L   G            +A+C EA++GA++LD   +   +V  S
Sbjct: 91  DYLLLGPGELKSGGFRRDSILADCVEAIIGAIYLDSDTEQVRKVILS 137


>gi|239624036|ref|ZP_04667067.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522067|gb|EEQ61933.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 235

 Score = 84.7 bits (208), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 65/214 (30%), Positives = 92/214 (42%), Gaps = 53/214 (24%)

Query: 734 LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
           L  LE+RI Y+F+++ L   ALTH SY        DH+R     C               
Sbjct: 5   LKELEERIDYQFKDQSLFSQALTHSSYANEH--RLDHSR-----C--------------- 42

Query: 794 NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
                                        NERLEFLGDAV+E +TS  L+H +  + EG 
Sbjct: 43  -----------------------------NERLEFLGDAVLEIVTSDFLYHKYATLPEGD 73

Query: 854 LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
           L   RA+IV    LA+ A  I L +++    G D          +++  EAL+GA++LDG
Sbjct: 74  LTKIRASIVCEPTLAYCAGDIRLGEYLFLGKGEDATGGRGRNSVVSDAMEALIGAIYLDG 133

Query: 914 GIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
           G   A +     +   N++  KQ  Y  +  LQE
Sbjct: 134 GFANAKEFIHRFIL--NDIEHKQLFYDSKTILQE 165



 Score = 42.0 bits (97), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 19/78 (24%)

Query: 945  LQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQR 1004
            L+E E   D Q+ +QS   + L +  Y++    +H R                    N+R
Sbjct: 5    LKELEERIDYQFKDQSLFSQALTHSSYANEHRLDHSR-------------------CNER 45

Query: 1005 LEFLGDTVLQLITSDYLY 1022
            LEFLGD VL+++TSD+LY
Sbjct: 46   LEFLGDAVLEIVTSDFLY 63


>gi|225019245|ref|ZP_03708437.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum
           DSM 5476]
 gi|224947876|gb|EEG29085.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum
           DSM 5476]
          Length = 228

 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 82/182 (45%), Gaps = 51/182 (28%)

Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
            E  I Y F N+ LL+ ALTH S+    G                       R H +N  
Sbjct: 4   FEKTIGYTFHNQKLLEQALTHSSFTNETG-----------------------RHHHKN-- 38

Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
                                     NERLEFLGD+VV  I + HLF  FPD+ EG L  
Sbjct: 39  --------------------------NERLEFLGDSVVSLIIANHLFVNFPDMPEGELTK 72

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            RA++V ++ LA  A RI L + ++   G +     + +  + + FEAL+GA++LDGG++
Sbjct: 73  LRASLVCDRSLAEFAGRIDLGNQLIMGKGEEHSGGRQRRSNLEDAFEALVGAIYLDGGLE 132

Query: 917 VA 918
            A
Sbjct: 133 AA 134


>gi|331082011|ref|ZP_08331139.1| ribonuclease III [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330405606|gb|EGG85136.1| ribonuclease III [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 236

 Score = 84.7 bits (208), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 68/211 (32%), Positives = 92/211 (43%), Gaps = 53/211 (25%)

Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
           LE +I Y+F+N  LL  ALTH SY      N  H                          
Sbjct: 10  LEKKIGYEFENFDLLVNALTHSSY-----ANEHH-------------------------- 38

Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
                            +A + N   NERLEFLGDAV+E  +S  LF+ + D+ EG L  
Sbjct: 39  -----------------IAYKEN---NERLEFLGDAVLELTSSEFLFYQYADLPEGKLTK 78

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            RA+IV    LA  AK I L D++L   G +          +++  EAL+GA++LDGG  
Sbjct: 79  KRASIVCEPTLALCAKEISLGDYLLLGKGEEATGGRNRNSIISDAMEALIGAIYLDGGFA 138

Query: 917 VADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
            A +      Y  N++  KQ  Y  +  LQE
Sbjct: 139 NAKEFVHK--YILNDIENKQLFYDSKTTLQE 167


>gi|260588638|ref|ZP_05854551.1| ribonuclease III [Blautia hansenii DSM 20583]
 gi|260541113|gb|EEX21682.1| ribonuclease III [Blautia hansenii DSM 20583]
          Length = 263

 Score = 84.7 bits (208), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 68/211 (32%), Positives = 92/211 (43%), Gaps = 53/211 (25%)

Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
           LE +I Y+F+N  LL  ALTH SY      N  H                          
Sbjct: 37  LEKKIGYEFENFDLLVNALTHSSY-----ANEHH-------------------------- 65

Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
                            +A + N   NERLEFLGDAV+E  +S  LF+ + D+ EG L  
Sbjct: 66  -----------------IAYKEN---NERLEFLGDAVLELTSSEFLFYQYADLPEGKLTK 105

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            RA+IV    LA  AK I L D++L   G +          +++  EAL+GA++LDGG  
Sbjct: 106 KRASIVCEPTLALCAKEISLGDYLLLGKGEEATGGRNRNSIISDAMEALIGAIYLDGGFA 165

Query: 917 VADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
            A +      Y  N++  KQ  Y  +  LQE
Sbjct: 166 NAKEFVHK--YILNDIENKQLFYDSKTTLQE 194


>gi|426403897|ref|YP_007022868.1| ribonuclease III [Bdellovibrio bacteriovorus str. Tiberius]
 gi|425860565|gb|AFY01601.1| ribonuclease III [Bdellovibrio bacteriovorus str. Tiberius]
          Length = 234

 Score = 84.3 bits (207), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 81/182 (44%), Gaps = 52/182 (28%)

Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
           LE+R+ Y F+   LL+ ALTH S+            N L N                   
Sbjct: 9   LEERVGYHFKKPALLERALTHKSFA-----------NELRN------------------- 38

Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
                                  + HNE+LEFLGDAV++ +    L+  FP   EGGL+ 
Sbjct: 39  ----------------------TVEHNEKLEFLGDAVLDLVVGEFLYEKFPTDTEGGLSK 76

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            RA+IV  + L+ LA  +GL   M    G  L    +    +A+ FEA++GAL+LDGG +
Sbjct: 77  KRASIVNEEVLSELALEMGLNKLMQLGKGEALTGGAQKPRLIASSFEAIVGALYLDGGFE 136

Query: 917 VA 918
           VA
Sbjct: 137 VA 138


>gi|90580325|ref|ZP_01236132.1| ribonuclease III [Photobacterium angustum S14]
 gi|90438627|gb|EAS63811.1| ribonuclease III [Vibrio angustum S14]
          Length = 224

 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 66/109 (60%), Gaps = 3/109 (2%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N THNERLEFLGD+++ F+ +  L+H FP ++EG ++  RA +V+ + LA L +   L 
Sbjct: 31  ANGTHNERLEFLGDSILSFVIADDLYHRFPSVDEGDMSRMRATLVRGKTLAELGREFELG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           D +L   G            +A+C EA++GA++LD  +   +QV S VL
Sbjct: 91  DHLLLGPGELKSGGFRRDSILADCVEAIIGAIYLDSDV---EQVRSIVL 136


>gi|313114998|ref|ZP_07800491.1| ribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622689|gb|EFQ06151.1| ribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 224

 Score = 84.3 bits (207), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 84/182 (46%), Gaps = 52/182 (28%)

Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
           LE  I YKF+N  LL++ALTH S          +A  S      R P             
Sbjct: 5   LETIIGYKFKNPELLEIALTHTS----------YANES------RTP------------- 35

Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
                                  + HNERLEFLGD+V++ +++ +LFH + D  EG L  
Sbjct: 36  -----------------------VKHNERLEFLGDSVLQIVSADYLFHAYADRPEGDLTR 72

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            RA++V    L   A+ I L +++    G + C        +++ FEAL+ AL+LDGG+D
Sbjct: 73  IRASLVSEGALFQFAQEIDLGEYLRLGRGEERCGGRTRPSVVSDAFEALIAALYLDGGMD 132

Query: 917 VA 918
           VA
Sbjct: 133 VA 134


>gi|20807916|ref|NP_623087.1| ribonuclease III [Thermoanaerobacter tengcongensis MB4]
 gi|22654052|sp|Q8R9W3.1|RNC_THETN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|20516484|gb|AAM24691.1| dsRNA-specific ribonuclease [Thermoanaerobacter tengcongensis MB4]
          Length = 228

 Score = 84.3 bits (207), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 83/155 (53%), Gaps = 18/155 (11%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGD+V+  + S +L+    D+EEG L+ YRA IV    LA  A++I L  F+  
Sbjct: 39  NERLEFLGDSVLSLVISEYLYKNRKDLEEGSLSKYRAEIVCEPSLARCARKIELGSFLRM 98

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGI------------DVADQVFSSVLYKDN 930
             G ++    +    +A+  EAL+ A++LDGG+            ++ D+V   ++Y+D 
Sbjct: 99  GKGEEISGGRDRDSILADAMEALLAAVYLDGGLEAVRRVILDLFKEIIDEVLKGIIYRDY 158

Query: 931 EVRFKQWMYYPQ------HPLQEQEPDGDRQWVEQ 959
           + R ++ +   +        ++E  PD ++ +V Q
Sbjct: 159 KTRLQEVVQSMEVGKITYELVEEIGPDHNKTFVTQ 193



 Score = 41.6 bits (96), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 966  LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG-SNQRLEFLGDTVLQLITSDYLY 1022
            L YLE      F    LL    T  S  +       SN+RLEFLGD+VL L+ S+YLY
Sbjct: 2    LTYLEQKINYEFKDKTLLLEALTHSSWAHEGKNEKVSNERLEFLGDSVLSLVISEYLY 59


>gi|320547232|ref|ZP_08041525.1| ribonuclease III [Streptococcus equinus ATCC 9812]
 gi|320448120|gb|EFW88870.1| ribonuclease III [Streptococcus equinus ATCC 9812]
          Length = 228

 Score = 84.3 bits (207), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 4/132 (3%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDAV++ + S +LF  +P   EG L+  R+ IV+ + LA  ++  G +D
Sbjct: 39  NISHNERLEFLGDAVLQLLISQYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDD 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRF 934
           F+   +G +          + + FEA +GAL +D G++  ++  + V+     K N  R 
Sbjct: 99  FIKLGNGEEKSGGRNRDTILGDLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEKGNFERV 158

Query: 935 KQWMYYPQHPLQ 946
           K +    Q  LQ
Sbjct: 159 KDYKTTLQELLQ 170



 Score = 43.9 bits (102), Expect = 0.51,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 6/58 (10%)

Query: 969  LEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            L+   G+ F    LL   FT  S  Y N    L +  N+RLEFLGD VLQL+ S YL+
Sbjct: 8    LQRDFGITFKDTTLLDTAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISQYLF 63


>gi|298528053|ref|ZP_07015457.1| ribonuclease III [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511705|gb|EFI35607.1| ribonuclease III [Desulfonatronospira thiodismutans ASO3-1]
          Length = 232

 Score = 84.3 bits (207), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 1/115 (0%)

Query: 815 ATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI 874
           A E ++ HNERLEFLGDAV+E   S  LF  FP   EG L   RAA+V    LA LA+ +
Sbjct: 29  ANERHMEHNERLEFLGDAVLELCISNVLFFRFPRAPEGHLTRLRAALVSEPTLARLARSL 88

Query: 875 GLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 929
            L D++    G +L    +    +A+  EA++GA++LD G D A +  ++ L++D
Sbjct: 89  TLGDYIFLGRGEELQGGRDRDSVLADTLEAILGAVYLDSGYDGAFECIAA-LFED 142


>gi|225571976|ref|ZP_03780840.1| hypothetical protein RUMHYD_00270 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040509|gb|EEG50755.1| ribonuclease III [Blautia hydrogenotrophica DSM 10507]
          Length = 244

 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 4/126 (3%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E I+S  L+  FP ++EG L   RA++V    LA  A+ I L++++L 
Sbjct: 50  NERLEFLGDAVLEVISSEFLYQKFPILQEGELTKKRASMVCEPTLALCAREIRLDNYLLL 109

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ-VFSSVLYKDNEVRFKQWMYYP 941
            HG +     +    +++  EA++GA++LDGG+  A + +   VL   N++  KQ  Y  
Sbjct: 110 GHGEENTGGRKRDSIVSDALEAVIGAIYLDGGLASAKEFILKHVL---NDMEHKQLFYDS 166

Query: 942 QHPLQE 947
           +  LQE
Sbjct: 167 KTILQE 172



 Score = 45.4 bits (106), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 6/61 (9%)

Query: 966  LQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYL 1021
            L+ LE   G  F  I LL +  T  S  Y+N      LG N+RLEFLGD VL++I+S++L
Sbjct: 12   LKELEKELGYQFRDINLLKQAVTHSS--YSNEKNMGKLGCNERLEFLGDAVLEVISSEFL 69

Query: 1022 Y 1022
            Y
Sbjct: 70   Y 70


>gi|294102050|ref|YP_003553908.1| ribonuclease III [Aminobacterium colombiense DSM 12261]
 gi|293617030|gb|ADE57184.1| ribonuclease III [Aminobacterium colombiense DSM 12261]
          Length = 240

 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 85/198 (42%), Gaps = 55/198 (27%)

Query: 730 FHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRR 789
           + R L   ++R+ Y F  + +LQ ALTH SY                          ++ 
Sbjct: 12  WQRELASFQERLGYLFSKKEILQEALTHASYAH------------------------EKG 47

Query: 790 IHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDI 849
           +HF                             HNERLEFLGDAV+E I S +LF+ +PD+
Sbjct: 48  LHF-----------------------------HNERLEFLGDAVLELIVSANLFNGYPDV 78

Query: 850 EEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGAL 909
           +EG L  YR+ +V    L+   K IGL   +    G  L  +      +A+  EA++GA+
Sbjct: 79  DEGTLTRYRSNLVCKNALSVWGKSIGLPQIIRLGKG--LEQQGASASIIADTSEAVLGAV 136

Query: 910 FLDGGIDVADQVFSSVLY 927
           F DGG   A  V    L+
Sbjct: 137 FSDGGFAAAQNVVRRYLF 154


>gi|167037696|ref|YP_001665274.1| ribonuclease III [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116111|ref|YP_004186270.1| ribonuclease III [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|326389510|ref|ZP_08211077.1| ribonuclease III [Thermoanaerobacter ethanolicus JW 200]
 gi|345017777|ref|YP_004820130.1| ribonuclease 3 [Thermoanaerobacter wiegelii Rt8.B1]
 gi|392940879|ref|ZP_10306523.1| ribonuclease III [Thermoanaerobacter siderophilus SR4]
 gi|166856530|gb|ABY94938.1| Ribonuclease III [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929202|gb|ADV79887.1| ribonuclease III [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|325994515|gb|EGD52940.1| ribonuclease III [Thermoanaerobacter ethanolicus JW 200]
 gi|344033120|gb|AEM78846.1| Ribonuclease 3 [Thermoanaerobacter wiegelii Rt8.B1]
 gi|392292629|gb|EIW01073.1| ribonuclease III [Thermoanaerobacter siderophilus SR4]
          Length = 246

 Score = 84.3 bits (207), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 98/191 (51%), Gaps = 21/191 (10%)

Query: 787 DRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVF 846
           ++RI++    K   N LI  ++        +++   NERLEFLGD+V+  + S +L+   
Sbjct: 24  EKRINYSFKDK---NLLIEALTHSSWAHEGKNSKISNERLEFLGDSVLSLVISEYLYKNR 80

Query: 847 PDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALM 906
            D+EEG L+ YRA IV    LA  A+ I L +F+    G +L    E    +A+  EA++
Sbjct: 81  KDLEEGSLSKYRAEIVCEPSLARCAREIELGNFLRIGKGEELTGGRERDSILADAMEAIL 140

Query: 907 GALFLDGGIDVA------------DQVFSSVLYKDNEVRFKQWMYYPQ------HPLQEQ 948
            A++LDGG++V             ++V   ++Y+D + + ++ +   +        ++E 
Sbjct: 141 AAVYLDGGLEVVRNVILELFKNIIEEVLEGLIYRDYKTKLQEVVQSMEIGKIIYELIEEM 200

Query: 949 EPDGDRQWVEQ 959
            PD ++ +V Q
Sbjct: 201 GPDHNKTFVTQ 211


>gi|389575595|ref|ZP_10165623.1| ribonuclease III [Eubacterium cellulosolvens 6]
 gi|389311080|gb|EIM56013.1| ribonuclease III [Eubacterium cellulosolvens 6]
          Length = 228

 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 79/136 (58%), Gaps = 5/136 (3%)

Query: 815 ATESNITH---NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLA 871
           A E ++ H   NERLEFLGDAV+E ++S +L+  +P++ EG L   RA++V    LA+ A
Sbjct: 31  ANEQHLGHRGCNERLEFLGDAVLELVSSEYLYDTYPEMPEGKLTRLRASLVCEPTLAYDA 90

Query: 872 KRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
           + IGL +++L   G D     +    +++  EA +GA+F DGG + A +    + Y  N+
Sbjct: 91  RCIGLPEYLLLGKGEDATGGRKRDSVVSDALEATIGAIFKDGGFEEAKKFI--LRYIMND 148

Query: 932 VRFKQWMYYPQHPLQE 947
           V  KQ  +  +  LQE
Sbjct: 149 VENKQLFHDSKTRLQE 164



 Score = 48.5 bits (114), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 6/64 (9%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT----LGSNQRLEFLGDTVLQLITS 1018
            +K+L+ LE  +G +FN I  L    +  S  Y N       G N+RLEFLGD VL+L++S
Sbjct: 1    MKKLRELEQKTGHVFNDISWLKLAMSHSS--YANEQHLGHRGCNERLEFLGDAVLELVSS 58

Query: 1019 DYLY 1022
            +YLY
Sbjct: 59   EYLY 62


>gi|283798076|ref|ZP_06347229.1| ribonuclease III [Clostridium sp. M62/1]
 gi|291074218|gb|EFE11582.1| ribonuclease III [Clostridium sp. M62/1]
 gi|295091753|emb|CBK77860.1| RNAse III [Clostridium cf. saccharolyticum K10]
 gi|295114861|emb|CBL35708.1| RNAse III [butyrate-producing bacterium SM4/1]
          Length = 234

 Score = 84.3 bits (207), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 68/211 (32%), Positives = 100/211 (47%), Gaps = 53/211 (25%)

Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
           LED+I Y F+++ L++LA++H SY      N  H                          
Sbjct: 9   LEDKIHYCFKDKSLIELAMSHSSY-----ANEKH-------------------------- 37

Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
                     + KLG           NERLEFLGDAV+E ++S  LFH FPD+ EG L  
Sbjct: 38  ----------LGKLG----------CNERLEFLGDAVLEIVSSDFLFHRFPDMPEGDLTK 77

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            RA++V    LA+ A++IGL  ++L   G D          +++  EAL+GA++LDGG  
Sbjct: 78  TRASMVCEPTLAYCAEQIGLGGYLLLGKGEDATGGRTRNSVVSDAMEALIGAIYLDGGFS 137

Query: 917 VADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
            A +   +  Y  N++  K+  Y  +  LQE
Sbjct: 138 CAKEFILN--YVLNDMEHKKLFYDSKTILQE 166


>gi|291546254|emb|CBL19362.1| RNAse III [Ruminococcus sp. SR1/5]
          Length = 226

 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 101/226 (44%), Gaps = 53/226 (23%)

Query: 733 SLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHF 792
           +L  LE  I Y+F  + LL+ A+TH SY      N  H                      
Sbjct: 4   NLKKLEQTIGYQFTAKSLLEQAMTHSSY-----ANEKH---------------------- 36

Query: 793 QNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEG 852
                         + KLG           NERLEFLGDAV+E I+S  L+  F + +EG
Sbjct: 37  --------------LGKLG----------CNERLEFLGDAVLELISSDFLYKKFRNNQEG 72

Query: 853 GLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLD 912
            L   RA++V  + LA+ A+  GL +F+L   G ++    +    +++  E+L+GA++LD
Sbjct: 73  ELTKKRASMVCEKSLAYCAREFGLPEFILLGRGEEMMGGRKRDSIVSDGLESLIGAMYLD 132

Query: 913 GGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVE 958
           GG + A       +   N++  K+  Y  +  LQE   +G    VE
Sbjct: 133 GGFEPAQAFVMKFIL--NDLEDKRIFYDSKTVLQEMVQEGGNHPVE 176



 Score = 46.6 bits (109), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 36/61 (59%), Gaps = 6/61 (9%)

Query: 966  LQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYL 1021
            L+ LE + G  F    LL +  T  S  Y N      LG N+RLEFLGD VL+LI+SD+L
Sbjct: 5    LKKLEQTIGYQFTAKSLLEQAMTHSS--YANEKHLGKLGCNERLEFLGDAVLELISSDFL 62

Query: 1022 Y 1022
            Y
Sbjct: 63   Y 63


>gi|229168588|ref|ZP_04296311.1| Ribonuclease 3 [Bacillus cereus AH621]
 gi|228614994|gb|EEK72096.1| Ribonuclease 3 [Bacillus cereus AH621]
          Length = 245

 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 75/157 (47%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAAIV    L   A  +     +L 
Sbjct: 57  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLL 116

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G+++       V+Y K NE  F   M Y 
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLEIVWGYLKEVVYPKINEGAFSHVMDYK 176

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 177 SQLQELIQRDGSGNVEYQILQEKGPAHNREFVSRVTL 213


>gi|355677934|ref|ZP_09060701.1| ribonuclease III [Clostridium citroniae WAL-17108]
 gi|354813020|gb|EHE97634.1| ribonuclease III [Clostridium citroniae WAL-17108]
          Length = 230

 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 815 ATESNITHN---ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLA 871
           A E  + HN   ERLEFLGDAV+E +TS  L+H +  + EG L   RA+IV    LA+ A
Sbjct: 32  ANEHRLDHNRCNERLEFLGDAVLEIVTSDFLYHKYESLPEGDLTKIRASIVCEPTLAYCA 91

Query: 872 KRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
             I L D++L   G D          +++  EAL+GA++LDGG   A +     +   N+
Sbjct: 92  GDIRLGDYLLLGKGEDATGGRCRNSVVSDAMEALIGAIYLDGGFANAKEFIHRFIL--ND 149

Query: 932 VRFKQWMYYPQHPLQE 947
           +  KQ  Y  +  LQE
Sbjct: 150 IEHKQLFYDSKTILQE 165


>gi|167765553|ref|ZP_02437617.1| hypothetical protein CLOSS21_00047 [Clostridium sp. SS2/1]
 gi|317498509|ref|ZP_07956803.1| ribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
 gi|429761479|ref|ZP_19293904.1| ribonuclease III [Anaerostipes hadrus DSM 3319]
 gi|167712738|gb|EDS23317.1| ribonuclease III [Clostridium sp. SS2/1]
 gi|291559019|emb|CBL37819.1| RNAse III [butyrate-producing bacterium SSC/2]
 gi|316894202|gb|EFV16390.1| ribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
 gi|429183732|gb|EKY24773.1| ribonuclease III [Anaerostipes hadrus DSM 3319]
          Length = 228

 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 71/115 (61%), Gaps = 2/115 (1%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDAV+E +TS +L+  +    EG L+  RA++V    LA  A+ I L  ++L
Sbjct: 43  NNERLEFLGDAVLELVTSNYLYRTYQKESEGKLSKIRASLVCEPTLAGCARDINLGKYVL 102

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD--NEVRF 934
            + G D+         +++ FEA++GA++LD GI+ A +   + L+KD  N+V F
Sbjct: 103 LSKGEDMTGGRSRDSILSDAFEAVIGAIYLDQGIETATKFIETYLFKDVENKVLF 157


>gi|427394181|ref|ZP_18887683.1| ribonuclease III [Alloiococcus otitis ATCC 51267]
 gi|425730169|gb|EKU93012.1| ribonuclease III [Alloiococcus otitis ATCC 51267]
          Length = 235

 Score = 84.0 bits (206), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/104 (44%), Positives = 61/104 (58%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           ERLEFLGDAVVE  TS +L+  FP++ EG L   RAA V+ + LA LA+   L  F+L  
Sbjct: 45  ERLEFLGDAVVELCTSAYLYDKFPELPEGQLTRIRAASVRAESLAQLARECDLPQFILLG 104

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            G ++    E    + + FEA  GA+F D G + A Q  S VL+
Sbjct: 105 KGEEMMQGRERPALLCDVFEAFTGAIFQDQGYEQARQFLSQVLF 148


>gi|441504428|ref|ZP_20986422.1| Ribonuclease III [Photobacterium sp. AK15]
 gi|441427895|gb|ELR65363.1| Ribonuclease III [Photobacterium sp. AK15]
          Length = 224

 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 63/104 (60%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N THNERLEFLGD+++ F+ +  L+H FP ++EG ++  RA +V+ + LA L +   L 
Sbjct: 31  ANGTHNERLEFLGDSILSFVIADDLYHRFPAVDEGDMSRMRATLVRGKTLAELGREFDLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           D +L   G            +A+C EA++GA++LD  I+   ++
Sbjct: 91  DHLLLGPGELKSGGFRRDSILADCVEAIIGAIYLDSDIETVRKI 134


>gi|406957759|gb|EKD85624.1| Ribonuclease 3 [uncultured bacterium]
          Length = 219

 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 72/126 (57%), Gaps = 1/126 (0%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NER+EFLGD+++ F+ S +LF+ +PD  EG L   R+ +V  + LA LAK   L   +  
Sbjct: 33  NERMEFLGDSILSFVVSDYLFNKYPDFNEGKLTNLRSLLVNTKMLADLAKECDLGSLLRL 92

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFS-SVLYKDNEVRFKQWMYYP 941
           + G +          +A+ FEA +GA+FLD GI+ A++  + +V+ +  E   K  +  P
Sbjct: 93  SKGEEESGGRNNPSLLADTFEAFIGAIFLDQGIEAAEKFINLTVIPRAEEFIQKNLLKDP 152

Query: 942 QHPLQE 947
           +  LQE
Sbjct: 153 KSRLQE 158


>gi|163846691|ref|YP_001634735.1| ribonuclease III [Chloroflexus aurantiacus J-10-fl]
 gi|222524496|ref|YP_002568967.1| Ribonuclease III [Chloroflexus sp. Y-400-fl]
 gi|254807243|sp|A9WJ69.1|RNC_CHLAA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807245|sp|B9LB70.1|RNC_CHLSY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|163667980|gb|ABY34346.1| Ribonuclease III [Chloroflexus aurantiacus J-10-fl]
 gi|222448375|gb|ACM52641.1| Ribonuclease III [Chloroflexus sp. Y-400-fl]
          Length = 244

 Score = 84.0 bits (206), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 87/159 (54%), Gaps = 22/159 (13%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +++T NERLEFLGD+V+ F+T+  LF  FPD +E  L  +RAA+V  + LA  A +  L 
Sbjct: 40  NHLTDNERLEFLGDSVLHFVTTTWLFETFPDQDEATLTNWRAALVSTKGLAECAAQFNLG 99

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVF--- 922
            +   + G D       +  +A+ FEAL+GA++LD G++ A            +Q+    
Sbjct: 100 QYAYLSRGEDNPGGRSRQKLLADLFEALVGAIYLDQGLETARAFIVPFWQARIEQIIHID 159

Query: 923 ---SSVLYKDNEVRFKQWMYYPQHPLQEQE-PDGDRQWV 957
              ++ L +  + RFKQ    P + ++E+  P+  R++V
Sbjct: 160 LDPTTRLQELMQARFKQ---LPDYSIEEERGPEHQREYV 195


>gi|291459099|ref|ZP_06598489.1| ribonuclease III [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418353|gb|EFE92072.1| ribonuclease III [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 234

 Score = 84.0 bits (206), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 53/199 (26%)

Query: 734 LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
           L++LE+++ Y F++R LL  ALTHPSY    G +P  A                      
Sbjct: 4   LSLLEEKLAYSFRDRELLLHALTHPSYSNEQG-DPKEAS--------------------- 41

Query: 794 NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
                                        N+RLEFLGDAV+E   S  L+H  P I+EG 
Sbjct: 42  -----------------------------NQRLEFLGDAVLELAASDFLYHRVPVIQEGV 72

Query: 854 LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHA-MANCFEALMGALFLD 912
           +   RAA+V    LA  A+++ L D+++   G      ++L+ + +++ FEA++GA++LD
Sbjct: 73  MTKLRAALVCEPTLAEAARKLSLGDYLVLGRGEGR-EGIQLRDSVLSDAFEAVIGAIYLD 131

Query: 913 GGIDVADQVFSSVLYKDNE 931
           GG   A      ++  D E
Sbjct: 132 GGFSAAQCFIKRLVLSDIE 150


>gi|78356751|ref|YP_388200.1| ribonuclease III [Desulfovibrio alaskensis G20]
 gi|90101625|sp|Q310Z1.1|RNC_DESDG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|78219156|gb|ABB38505.1| ribonuclease III [Desulfovibrio alaskensis G20]
          Length = 229

 Score = 84.0 bits (206), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 60/192 (31%), Positives = 82/192 (42%), Gaps = 56/192 (29%)

Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
           L+D + Y+F +  LL+ ALTH SY    GT                              
Sbjct: 5   LQDVLCYRFADVRLLETALTHSSYANERGTE----------------------------- 35

Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
                                  I HNERLE+LGDAV+E   S  LF  FP+  EG L  
Sbjct: 36  -----------------------IEHNERLEYLGDAVLELTVSEQLFTRFPEAREGQLTR 72

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            RA +V    LA LA+ + L+ ++L   G +          +++ FEA++GA+FLDGG  
Sbjct: 73  MRARLVSKPSLAELARELKLDTYLLLGKGEESQGGRTRSSVLSDAFEAILGAIFLDGGYA 132

Query: 917 VADQ----VFSS 924
            A +    VFSS
Sbjct: 133 AAGKTVLHVFSS 144


>gi|312135000|ref|YP_004002338.1| ribonuclease iii [Caldicellulosiruptor owensensis OL]
 gi|311775051|gb|ADQ04538.1| ribonuclease III [Caldicellulosiruptor owensensis OL]
          Length = 222

 Score = 84.0 bits (206), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/117 (36%), Positives = 71/117 (60%)

Query: 810 LGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAH 869
           L  K AT SN    ERLEFLGDA +E   S +L+  FP++ EG L   RAA+V +Q L+ 
Sbjct: 22  LTHKSATHSNKNCYERLEFLGDAALELAVSKYLYVYFPELSEGELTNIRAAVVCSQTLSK 81

Query: 870 LAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           +A+++ L++ +++     +    E K  +A+  EAL GA+F++ G D  +++  ++L
Sbjct: 82  VAEKLNLKNHIIFGKREKMEKFYENKSILADVLEALFGAIFIESGFDTVEKIIVNLL 138


>gi|344199888|ref|YP_004784214.1| ribonuclease 3 [Acidithiobacillus ferrivorans SS3]
 gi|343775332|gb|AEM47888.1| Ribonuclease 3 [Acidithiobacillus ferrivorans SS3]
          Length = 226

 Score = 83.6 bits (205), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/105 (38%), Positives = 61/105 (58%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDA + F+ +  L+  FP + EG L+  RA +V+ + LA +A +I L DF++
Sbjct: 34  HNERLEFLGDAALNFVVAAKLYARFPKVSEGDLSRMRARLVREETLAEIAGKIALADFLI 93

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
              G             A+  EA++GA FLDGG   A+ + + ++
Sbjct: 94  LGSGEIRSGGARRDSIRADALEAVIGAAFLDGGFAAAEDIVAQLV 138


>gi|89075088|ref|ZP_01161529.1| ribonuclease III [Photobacterium sp. SKA34]
 gi|89049175|gb|EAR54740.1| ribonuclease III [Photobacterium sp. SKA34]
          Length = 239

 Score = 83.6 bits (205), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 61/99 (61%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N THNERLEFLGD+++ F+ +  L+H FP ++EG ++  RA +V+ + LA L +   L 
Sbjct: 46  ANGTHNERLEFLGDSILSFVVADDLYHRFPSVDEGDMSRMRATLVRGKTLAELGREFELG 105

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
           D +L   G            +A+C EA++GA++LD  ++
Sbjct: 106 DHLLLGPGELKSGGFRRDSILADCVEAIIGAIYLDSDVE 144


>gi|228940937|ref|ZP_04103496.1| Ribonuclease 3 [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228966797|ref|ZP_04127841.1| Ribonuclease 3 [Bacillus thuringiensis serovar sotto str. T04001]
 gi|365159374|ref|ZP_09355555.1| ribonuclease 3 [Bacillus sp. 7_6_55CFAA_CT2]
 gi|228792896|gb|EEM40454.1| Ribonuclease 3 [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228818773|gb|EEM64839.1| Ribonuclease 3 [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|363625372|gb|EHL76413.1| ribonuclease 3 [Bacillus sp. 7_6_55CFAA_CT2]
          Length = 225

 Score = 83.6 bits (205), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 75/157 (47%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAAIV    L   A  +     +L 
Sbjct: 37  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 96

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G++   +    ++Y K NE  F   M Y 
Sbjct: 97  GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWEFLKEIVYPKINEGAFSHVMDYK 156

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 157 SQLQELIQRDGSGNVEYQILQEKGPAHNREFVSRVTL 193


>gi|238926905|ref|ZP_04658665.1| ribonuclease III [Selenomonas flueggei ATCC 43531]
 gi|238885139|gb|EEQ48777.1| ribonuclease III [Selenomonas flueggei ATCC 43531]
          Length = 238

 Score = 83.6 bits (205), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/98 (44%), Positives = 62/98 (63%)

Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
           THNERLEFLGDAV+E   S +L+  +P   EG L   RA++VQ++ LA LA+R+ L   +
Sbjct: 48  THNERLEFLGDAVLELAISTYLYVAYPHCSEGELTKMRASLVQSETLARLARRLHLGAHL 107

Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
               G  L    E ++ + N FEA++GA++LD G D A
Sbjct: 108 RMGRGEMLGGGAERQNNLENVFEAVIGAVYLDRGWDAA 145


>gi|451982016|ref|ZP_21930351.1| Ribonuclease III [Nitrospina gracilis 3/211]
 gi|451760760|emb|CCQ91627.1| Ribonuclease III [Nitrospina gracilis 3/211]
          Length = 241

 Score = 83.6 bits (205), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 18/155 (11%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I +NER EF+GD+V++ + S ++   F D  EG L+  RAA+V    LA LA+ I L D+
Sbjct: 44  IKNNERFEFMGDSVLDVVVSHYMVKTFQDFSEGLLSKIRAAVVNEACLAGLARDICLGDY 103

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD-----NEVRF 934
           +L   G DL    +    +AN FEA+ GA++ D  ++ A  VF   L K+        RF
Sbjct: 104 LLLGRGEDLTGGRDKNSILANAFEAVAGAVYFDSNLETAYDVFLPRLKKEIAQYAKTSRF 163

Query: 935 KQWMYYPQH-------------PLQEQEPDGDRQW 956
           + +    QH              ++E  PD ++Q+
Sbjct: 164 RDFKSELQHFSQNTLNCIPFYKVVKETGPDHEKQF 198


>gi|423470063|ref|ZP_17446807.1| ribonuclease 3 [Bacillus cereus BAG6O-2]
 gi|402437315|gb|EJV69339.1| ribonuclease 3 [Bacillus cereus BAG6O-2]
          Length = 245

 Score = 83.6 bits (205), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAAIV    L   A  +     +L 
Sbjct: 57  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLL 116

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G++        V+Y K NE  F   M Y 
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGYLKEVVYPKINEGAFSHVMDYK 176

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 177 SQLQELIQRDGSGSIEYQILQEKGPAHNREFVSRVTL 213


>gi|295100361|emb|CBK97906.1| RNAse III [Faecalibacterium prausnitzii L2-6]
          Length = 224

 Score = 83.6 bits (205), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 62/99 (62%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGD+V++ +++ +LFH + D  EG L   R+++V    L   A+ I L D+
Sbjct: 36  VKHNERLEFLGDSVLQIVSADYLFHAYADRPEGDLTRIRSSLVSEGALFQFAQEINLGDY 95

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
           +    G + C        +++ FEAL+ AL+LDGG++VA
Sbjct: 96  LRLGRGEEHCGGRTRPSVVSDAFEALIAALYLDGGMEVA 134



 Score = 44.7 bits (104), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 5/57 (8%)

Query: 969  LEYSSGVIFNHIRLLARVFTTRSMGYTNLT---LGSNQRLEFLGDTVLQLITSDYLY 1022
            LE   G  F H  LL    T  S  Y N T   +  N+RLEFLGD+VLQ++++DYL+
Sbjct: 5    LETIIGYKFKHPELLETALTHTS--YANETRPPVKHNERLEFLGDSVLQIVSADYLF 59


>gi|399524971|ref|ZP_10765457.1| ribonuclease III [Atopobium sp. ICM58]
 gi|398373671|gb|EJN51565.1| ribonuclease III [Atopobium sp. ICM58]
          Length = 240

 Score = 83.6 bits (205), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/111 (41%), Positives = 66/111 (59%), Gaps = 1/111 (0%)

Query: 812 RKVATESN-ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
           R  A E+  I +NERLEFLGD+V+  I +  L+  +PD+ E  L+  RAA V  Q LA  
Sbjct: 38  RSYANEAGGIANNERLEFLGDSVLSIIIAQKLYEQYPDVPESDLSRMRAATVSQQPLAAA 97

Query: 871 AKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           A+RIGL DF+    G  +    E    +++ FEAL+GA +L  G++ A +V
Sbjct: 98  ARRIGLGDFVFLGKGESMHGGREKDSILSDTFEALIGATYLTSGLEEARRV 148


>gi|423452850|ref|ZP_17429703.1| ribonuclease 3 [Bacillus cereus BAG5X1-1]
 gi|401139409|gb|EJQ46971.1| ribonuclease 3 [Bacillus cereus BAG5X1-1]
          Length = 245

 Score = 83.6 bits (205), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAAIV    L   A  +     +L 
Sbjct: 57  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLL 116

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G++        V+Y K NE  F   M Y 
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGYLKEVVYPKINEGAFSHVMDYK 176

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213


>gi|427419495|ref|ZP_18909678.1| ribonuclease III [Leptolyngbya sp. PCC 7375]
 gi|425762208|gb|EKV03061.1| ribonuclease III [Leptolyngbya sp. PCC 7375]
          Length = 223

 Score = 83.6 bits (205), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 76/140 (54%), Gaps = 14/140 (10%)

Query: 812 RKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLA 871
           +  A E++   NERLEFLGDA++ F++  +L+  +PD  EG L   RAA+V    L++ A
Sbjct: 22  KSYAKENDCEDNERLEFLGDAILTFLSGEYLYQRYPDRPEGELTPLRAALVDENQLSYFA 81

Query: 872 KRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID--------------V 917
            ++ L+ ++  + G++       K  + + FEAL+GA FLD G +              V
Sbjct: 82  SQLQLQKYLCLSRGAENSDSRNSKRVLCSTFEALIGAYFLDSGQNIETIRAYVVPMFDSV 141

Query: 918 ADQVFSSVLYKDNEVRFKQW 937
           AD V  + ++ + + RF+ W
Sbjct: 142 ADTVSETAIHVNYKSRFQIW 161


>gi|392988132|ref|YP_006486725.1| ribonuclease III [Enterococcus hirae ATCC 9790]
 gi|392335552|gb|AFM69834.1| ribonuclease III [Enterococcus hirae ATCC 9790]
          Length = 228

 Score = 83.6 bits (205), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 64/108 (59%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           ++ NERLEFLGDAV+E + S +L+ ++PDI EG L   RAAIV+   L+  AK  G + +
Sbjct: 41  LSDNERLEFLGDAVLELMVSEYLYRLYPDIPEGKLTKTRAAIVREDSLSKFAKECGFDKY 100

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           ++   G +          + + FEA +GAL+LD G + A     +V++
Sbjct: 101 IMLGKGEENSGGRTRPALLCDLFEAFLGALYLDQGFEAAHAFLQTVVF 148



 Score = 48.9 bits (115), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 2/50 (4%)

Query: 975  VIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            ++F+ + LL + FT  S    + NL L  N+RLEFLGD VL+L+ S+YLY
Sbjct: 15   IVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSEYLY 64


>gi|344995859|ref|YP_004798202.1| ribonuclease 3 [Caldicellulosiruptor lactoaceticus 6A]
 gi|343964078|gb|AEM73225.1| Ribonuclease 3 [Caldicellulosiruptor lactoaceticus 6A]
          Length = 222

 Score = 83.6 bits (205), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/117 (36%), Positives = 72/117 (61%)

Query: 810 LGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAH 869
           L  K AT SN    ERLEFLGDA +E   S +LF  FP++ EG L   RAA+V +Q L+ 
Sbjct: 22  LTHKSATHSNKNCYERLEFLGDAALELAVSKYLFVHFPELSEGELTNIRAAVVCSQTLSK 81

Query: 870 LAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           +A+++ L++ +++     +    E K  +A+  EA+ GA+F++ G D+ +++  ++L
Sbjct: 82  VAEKLNLKNHIIFGKREKMEKFHENKSILADVLEAIFGAIFIESGFDIVEKIIVNLL 138


>gi|229162785|ref|ZP_04290742.1| Ribonuclease 3 [Bacillus cereus R309803]
 gi|228620667|gb|EEK77536.1| Ribonuclease 3 [Bacillus cereus R309803]
          Length = 245

 Score = 83.6 bits (205), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAAIV    L   A  +     +L 
Sbjct: 57  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 116

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G++        V+Y K NE  F   M Y 
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFLKEVVYPKINEGAFSHVMDYK 176

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213


>gi|166154508|ref|YP_001654626.1| ribonuclease III [Chlamydia trachomatis 434/Bu]
 gi|255348658|ref|ZP_05380665.1| ribonuclease III [Chlamydia trachomatis 70]
 gi|255503198|ref|ZP_05381588.1| ribonuclease III [Chlamydia trachomatis 70s]
 gi|301335768|ref|ZP_07224012.1| ribonuclease III [Chlamydia trachomatis L2tet1]
 gi|339625959|ref|YP_004717438.1| ribonuclease III [Chlamydia trachomatis L2c]
 gi|385241664|ref|YP_005809504.1| ribonuclease III [Chlamydia trachomatis E/11023]
 gi|385245271|ref|YP_005814094.1| ribonuclease III [Chlamydia trachomatis E/150]
 gi|386262648|ref|YP_005815927.1| ribonuclease III [Chlamydia trachomatis Sweden2]
 gi|389858863|ref|YP_006361104.1| ribonuclease III [Chlamydia trachomatis E/SW3]
 gi|238687367|sp|B0B7L3.1|RNC_CHLT2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|165930496|emb|CAP03989.1| ribonuclease III [Chlamydia trachomatis 434/Bu]
 gi|289525336|emb|CBJ14812.1| ribonuclease III [Chlamydia trachomatis Sweden2]
 gi|296434887|gb|ADH17065.1| ribonuclease III [Chlamydia trachomatis E/150]
 gi|296438607|gb|ADH20760.1| ribonuclease III [Chlamydia trachomatis E/11023]
 gi|339460721|gb|AEJ77224.1| ribonuclease III [Chlamydia trachomatis L2c]
 gi|380250812|emb|CCE12572.1| ribonuclease III [Chlamydia trachomatis E/SW3]
 gi|440529667|emb|CCP55151.1| ribonuclease III [Chlamydia trachomatis E/SotonE4]
 gi|440530566|emb|CCP56050.1| ribonuclease III [Chlamydia trachomatis E/SotonE8]
 gi|440535033|emb|CCP60543.1| ribonuclease III [Chlamydia trachomatis E/Bour]
 gi|440536814|emb|CCP62328.1| ribonuclease III [Chlamydia trachomatis L1/440/LN]
 gi|440537705|emb|CCP63219.1| ribonuclease III [Chlamydia trachomatis L1/1322/p2]
 gi|440538595|emb|CCP64109.1| ribonuclease III [Chlamydia trachomatis L1/115]
 gi|440539483|emb|CCP64997.1| ribonuclease III [Chlamydia trachomatis L1/224]
 gi|440540374|emb|CCP65888.1| ribonuclease III [Chlamydia trachomatis L2/25667R]
 gi|440541263|emb|CCP66777.1| ribonuclease III [Chlamydia trachomatis L3/404/LN]
          Length = 231

 Score = 83.6 bits (205), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 1/125 (0%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           +ERLEFLGDAV+  + + HLF +FP + EG L+T RAA+V  +      +++ L + +L 
Sbjct: 44  SERLEFLGDAVLGLVVTEHLFLLFPALNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLI 103

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 942
             G  +        A AN FEA++GA++LDGG+  A Q+   +L  D E      +  P+
Sbjct: 104 GRGEKMQSHRGKISAYANLFEAILGAVYLDGGLSPARQIIVPLL-PDKESILPLMLVNPK 162

Query: 943 HPLQE 947
           + LQ+
Sbjct: 163 NRLQQ 167


>gi|423522321|ref|ZP_17498794.1| ribonuclease 3 [Bacillus cereus HuA4-10]
 gi|423558588|ref|ZP_17534890.1| ribonuclease 3 [Bacillus cereus MC67]
 gi|401175015|gb|EJQ82218.1| ribonuclease 3 [Bacillus cereus HuA4-10]
 gi|401191856|gb|EJQ98878.1| ribonuclease 3 [Bacillus cereus MC67]
          Length = 245

 Score = 83.6 bits (205), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAAIV    L   A  +     +L 
Sbjct: 57  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLL 116

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G++        V+Y K NE  F   M Y 
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGYLKEVVYPKINEGAFSHVMDYK 176

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213


>gi|166155383|ref|YP_001653638.1| ribonuclease III [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|238687467|sp|B0BBS8.1|RNC_CHLTB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|165931371|emb|CAP06943.1| ribonuclease III [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|440526098|emb|CCP51582.1| ribonuclease III [Chlamydia trachomatis L2b/8200/07]
 gi|440535923|emb|CCP61436.1| ribonuclease III [Chlamydia trachomatis L2b/795]
 gi|440542151|emb|CCP67665.1| ribonuclease III [Chlamydia trachomatis L2b/UCH-2]
 gi|440543042|emb|CCP68556.1| ribonuclease III [Chlamydia trachomatis L2b/Canada2]
 gi|440543933|emb|CCP69447.1| ribonuclease III [Chlamydia trachomatis L2b/LST]
 gi|440544823|emb|CCP70337.1| ribonuclease III [Chlamydia trachomatis L2b/Ams1]
 gi|440545713|emb|CCP71227.1| ribonuclease III [Chlamydia trachomatis L2b/CV204]
 gi|440913975|emb|CCP90392.1| ribonuclease III [Chlamydia trachomatis L2b/Ams2]
 gi|440914865|emb|CCP91282.1| ribonuclease III [Chlamydia trachomatis L2b/Ams3]
 gi|440915757|emb|CCP92174.1| ribonuclease III [Chlamydia trachomatis L2b/Canada1]
 gi|440916651|emb|CCP93068.1| ribonuclease III [Chlamydia trachomatis L2b/Ams4]
 gi|440917541|emb|CCP93958.1| ribonuclease III [Chlamydia trachomatis L2b/Ams5]
          Length = 231

 Score = 83.6 bits (205), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 1/125 (0%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           +ERLEFLGDAV+  + + HLF +FP + EG L+T RAA+V  +      +++ L + +L 
Sbjct: 44  SERLEFLGDAVLGLVVTEHLFLLFPALNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLI 103

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 942
             G  +        A AN FEA++GA++LDGG+  A Q+   +L  D E      +  P+
Sbjct: 104 GRGEKMQSHRGKISAYANLFEAILGAVYLDGGLSPARQIIVPLL-PDKESILPLMLVNPK 162

Query: 943 HPLQE 947
           + LQ+
Sbjct: 163 NRLQQ 167


>gi|255506876|ref|ZP_05382515.1| ribonuclease III [Chlamydia trachomatis D(s)2923]
 gi|389857987|ref|YP_006360229.1| ribonuclease III [Chlamydia trachomatis F/SW4]
 gi|389859739|ref|YP_006361979.1| ribonuclease III [Chlamydia trachomatis F/SW5]
 gi|380249059|emb|CCE14350.1| ribonuclease III [Chlamydia trachomatis F/SW5]
 gi|380249934|emb|CCE13461.1| ribonuclease III [Chlamydia trachomatis F/SW4]
 gi|440526994|emb|CCP52478.1| ribonuclease III [Chlamydia trachomatis D/SotonD1]
 gi|440531458|emb|CCP56968.1| ribonuclease III [Chlamydia trachomatis F/SotonF3]
          Length = 231

 Score = 83.6 bits (205), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 1/125 (0%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           +ERLEFLGDAV+  + + HLF +FP + EG L+T RAA+V  +      +++ L + +L 
Sbjct: 44  SERLEFLGDAVLGLVVTEHLFLLFPALNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLI 103

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 942
             G  +        A AN FEA++GA++LDGG+  A Q+   +L  D E      +  P+
Sbjct: 104 GRGEKMQSHRGKISAYANLFEAILGAVYLDGGLSPARQIIVPLL-PDKESILPLMLVNPK 162

Query: 943 HPLQE 947
           + LQ+
Sbjct: 163 NRLQQ 167


>gi|313897603|ref|ZP_07831145.1| ribonuclease III [Clostridium sp. HGF2]
 gi|373121991|ref|ZP_09535858.1| ribonuclease III [Erysipelotrichaceae bacterium 21_3]
 gi|422329410|ref|ZP_16410435.1| ribonuclease III [Erysipelotrichaceae bacterium 6_1_45]
 gi|312957555|gb|EFR39181.1| ribonuclease III [Clostridium sp. HGF2]
 gi|371657022|gb|EHO22336.1| ribonuclease III [Erysipelotrichaceae bacterium 6_1_45]
 gi|371664970|gb|EHO30139.1| ribonuclease III [Erysipelotrichaceae bacterium 21_3]
          Length = 227

 Score = 83.6 bits (205), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 66/104 (63%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEF+GDAV++  T+  LF + P++ EG + T RA +V  + LA   +++GL  +++ 
Sbjct: 41  NERLEFMGDAVLQLWTTKKLFLLEPELSEGQMTTLRAQLVCEEALAEYNRQLGLGKYLML 100

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
             G +     +    +A+ FEAL+GA+FLD G++  D + S+V+
Sbjct: 101 GVGEEKTGGRQRDSILADMFEALLGAVFLDQGMEAIDSILSAVV 144


>gi|229098318|ref|ZP_04229265.1| Ribonuclease 3 [Bacillus cereus Rock3-29]
 gi|229104411|ref|ZP_04235080.1| Ribonuclease 3 [Bacillus cereus Rock3-28]
 gi|229117335|ref|ZP_04246713.1| Ribonuclease 3 [Bacillus cereus Rock1-3]
 gi|407706308|ref|YP_006829893.1| hypothetical protein MC28_3072 [Bacillus thuringiensis MC28]
 gi|423378312|ref|ZP_17355596.1| ribonuclease 3 [Bacillus cereus BAG1O-2]
 gi|423441420|ref|ZP_17418326.1| ribonuclease 3 [Bacillus cereus BAG4X2-1]
 gi|423448354|ref|ZP_17425233.1| ribonuclease 3 [Bacillus cereus BAG5O-1]
 gi|423464494|ref|ZP_17441262.1| ribonuclease 3 [Bacillus cereus BAG6O-1]
 gi|423533836|ref|ZP_17510254.1| ribonuclease 3 [Bacillus cereus HuB2-9]
 gi|423540895|ref|ZP_17517286.1| ribonuclease 3 [Bacillus cereus HuB4-10]
 gi|423547133|ref|ZP_17523491.1| ribonuclease 3 [Bacillus cereus HuB5-5]
 gi|423623075|ref|ZP_17598853.1| ribonuclease 3 [Bacillus cereus VD148]
 gi|228666235|gb|EEL21699.1| Ribonuclease 3 [Bacillus cereus Rock1-3]
 gi|228679109|gb|EEL33317.1| Ribonuclease 3 [Bacillus cereus Rock3-28]
 gi|228685216|gb|EEL39147.1| Ribonuclease 3 [Bacillus cereus Rock3-29]
 gi|401128948|gb|EJQ36631.1| ribonuclease 3 [Bacillus cereus BAG5O-1]
 gi|401172083|gb|EJQ79304.1| ribonuclease 3 [Bacillus cereus HuB4-10]
 gi|401178854|gb|EJQ86027.1| ribonuclease 3 [Bacillus cereus HuB5-5]
 gi|401259848|gb|EJR66022.1| ribonuclease 3 [Bacillus cereus VD148]
 gi|401636578|gb|EJS54332.1| ribonuclease 3 [Bacillus cereus BAG1O-2]
 gi|402418081|gb|EJV50381.1| ribonuclease 3 [Bacillus cereus BAG4X2-1]
 gi|402420761|gb|EJV53032.1| ribonuclease 3 [Bacillus cereus BAG6O-1]
 gi|402464055|gb|EJV95755.1| ribonuclease 3 [Bacillus cereus HuB2-9]
 gi|407383993|gb|AFU14494.1| Ribonuclease 3 [Bacillus thuringiensis MC28]
          Length = 245

 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAAIV    L   A  +     +L 
Sbjct: 57  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 116

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G++        ++Y K NE  F   M Y 
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYK 176

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213


>gi|423612066|ref|ZP_17587927.1| ribonuclease 3 [Bacillus cereus VD107]
 gi|401247073|gb|EJR53417.1| ribonuclease 3 [Bacillus cereus VD107]
          Length = 245

 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAAIV    L   A  +     +L 
Sbjct: 57  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLL 116

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G++        V+Y K NE  F   M Y 
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFLKEVVYPKINEGAFSHVMDYK 176

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213


>gi|229031479|ref|ZP_04187479.1| Ribonuclease 3 [Bacillus cereus AH1271]
 gi|228729768|gb|EEL80748.1| Ribonuclease 3 [Bacillus cereus AH1271]
          Length = 245

 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAAIV    L   A  +     +L 
Sbjct: 57  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 116

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G++        V+Y K NE  F   M Y 
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFLKEVVYPKINEGAFSHVMDYK 176

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213


>gi|229828999|ref|ZP_04455068.1| hypothetical protein GCWU000342_01084 [Shuttleworthia satelles DSM
           14600]
 gi|229792162|gb|EEP28276.1| hypothetical protein GCWU000342_01084 [Shuttleworthia satelles DSM
           14600]
          Length = 230

 Score = 83.2 bits (204), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 107/241 (44%), Gaps = 66/241 (27%)

Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
           LE +I Y+FQ++ LL+ ALTH S+      N  H +                        
Sbjct: 6   LEAKIGYQFQDKSLLRQALTHSSF-----ANERHMKAH---------------------- 38

Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
                                   + NERLEFLGDAV+E ++S  L+  +PD+ EG L  
Sbjct: 39  ------------------------SDNERLEFLGDAVLEVVSSEFLYLNYPDLPEGRLTP 74

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            RA++V    LA  A+ IGL   +  A G D     E    +++  EA++GA+FLDGGI+
Sbjct: 75  LRASLVCEPTLAIAAREIGLGACLRLARGEDQSGGRERDSILSDALEAVIGAVFLDGGIE 134

Query: 917 VADQVF---------SSVLYKDNEVRFKQWMYYPQHP------LQEQEPDGDRQWVEQSP 961
            A  +             LY D++ R ++ +   +        ++E+ PD  +++V ++ 
Sbjct: 135 PAKALIIRYILTDIEHKKLYHDSKTRLQEMVQAMEEASLDYVLVREEGPDHAKRFVTEAR 194

Query: 962 L 962
           L
Sbjct: 195 L 195


>gi|229019045|ref|ZP_04175885.1| Ribonuclease 3 [Bacillus cereus AH1273]
 gi|423389844|ref|ZP_17367070.1| ribonuclease 3 [Bacillus cereus BAG1X1-3]
 gi|423418244|ref|ZP_17395333.1| ribonuclease 3 [Bacillus cereus BAG3X2-1]
 gi|228742247|gb|EEL92407.1| Ribonuclease 3 [Bacillus cereus AH1273]
 gi|401106517|gb|EJQ14478.1| ribonuclease 3 [Bacillus cereus BAG3X2-1]
 gi|401641935|gb|EJS59652.1| ribonuclease 3 [Bacillus cereus BAG1X1-3]
          Length = 245

 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAAIV    L   A  +     +L 
Sbjct: 57  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 116

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G++        V+Y K NE  F   M Y 
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFLKEVVYPKINEGAFSHVMDYK 176

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 177 SQLQELIQRDGSGNVEYQILQEKGPAHNREFVSRVTL 213


>gi|42782941|ref|NP_980188.1| ribonuclease III [Bacillus cereus ATCC 10987]
 gi|47570283|ref|ZP_00240932.1| ribonuclease III [Bacillus cereus G9241]
 gi|206978506|ref|ZP_03239364.1| ribonuclease III [Bacillus cereus H3081.97]
 gi|217961269|ref|YP_002339837.1| ribonuclease III [Bacillus cereus AH187]
 gi|222097294|ref|YP_002531351.1| ribonuclease iii [Bacillus cereus Q1]
 gi|228986992|ref|ZP_04147118.1| Ribonuclease 3 [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229157425|ref|ZP_04285503.1| Ribonuclease 3 [Bacillus cereus ATCC 4342]
 gi|229197960|ref|ZP_04324674.1| Ribonuclease 3 [Bacillus cereus m1293]
 gi|375285772|ref|YP_005106211.1| ribonuclease III [Bacillus cereus NC7401]
 gi|384181662|ref|YP_005567424.1| ribonuclease III [Bacillus thuringiensis serovar finitimus YBT-020]
 gi|402556030|ref|YP_006597301.1| ribonuclease III [Bacillus cereus FRI-35]
 gi|423353551|ref|ZP_17331178.1| ribonuclease 3 [Bacillus cereus IS075]
 gi|423374354|ref|ZP_17351692.1| ribonuclease 3 [Bacillus cereus AND1407]
 gi|423395850|ref|ZP_17373051.1| ribonuclease 3 [Bacillus cereus BAG2X1-1]
 gi|423406726|ref|ZP_17383875.1| ribonuclease 3 [Bacillus cereus BAG2X1-3]
 gi|423567256|ref|ZP_17543503.1| ribonuclease 3 [Bacillus cereus MSX-A12]
 gi|423574545|ref|ZP_17550664.1| ribonuclease 3 [Bacillus cereus MSX-D12]
 gi|423604524|ref|ZP_17580417.1| ribonuclease 3 [Bacillus cereus VD102]
 gi|423615890|ref|ZP_17591724.1| ribonuclease 3 [Bacillus cereus VD115]
 gi|81409451|sp|Q732M1.1|RNC_BACC1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735369|sp|B7HLI2.1|RNC_BACC7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807238|sp|B9IVD8.1|RNC_BACCQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|42738868|gb|AAS42796.1| ribonuclease III [Bacillus cereus ATCC 10987]
 gi|47553047|gb|EAL11449.1| ribonuclease III [Bacillus cereus G9241]
 gi|206743285|gb|EDZ54734.1| ribonuclease III [Bacillus cereus H3081.97]
 gi|217063842|gb|ACJ78092.1| ribonuclease III [Bacillus cereus AH187]
 gi|221241352|gb|ACM14062.1| ribonuclease III [Bacillus cereus Q1]
 gi|228585439|gb|EEK43543.1| Ribonuclease 3 [Bacillus cereus m1293]
 gi|228626152|gb|EEK82901.1| Ribonuclease 3 [Bacillus cereus ATCC 4342]
 gi|228772770|gb|EEM21210.1| Ribonuclease 3 [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|324327746|gb|ADY23006.1| ribonuclease III [Bacillus thuringiensis serovar finitimus YBT-020]
 gi|358354299|dbj|BAL19471.1| ribonuclease III [Bacillus cereus NC7401]
 gi|401089364|gb|EJP97535.1| ribonuclease 3 [Bacillus cereus IS075]
 gi|401094266|gb|EJQ02348.1| ribonuclease 3 [Bacillus cereus AND1407]
 gi|401212070|gb|EJR18816.1| ribonuclease 3 [Bacillus cereus MSX-D12]
 gi|401214344|gb|EJR21074.1| ribonuclease 3 [Bacillus cereus MSX-A12]
 gi|401245144|gb|EJR51502.1| ribonuclease 3 [Bacillus cereus VD102]
 gi|401260427|gb|EJR66600.1| ribonuclease 3 [Bacillus cereus VD115]
 gi|401653592|gb|EJS71136.1| ribonuclease 3 [Bacillus cereus BAG2X1-1]
 gi|401660016|gb|EJS77499.1| ribonuclease 3 [Bacillus cereus BAG2X1-3]
 gi|401797240|gb|AFQ11099.1| ribonuclease III [Bacillus cereus FRI-35]
          Length = 245

 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAAIV    L   A  +     +L 
Sbjct: 57  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 116

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G++        ++Y K NE  F   M Y 
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYK 176

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213


>gi|266623888|ref|ZP_06116823.1| ribonuclease III, partial [Clostridium hathewayi DSM 13479]
 gi|288864294|gb|EFC96592.1| ribonuclease III [Clostridium hathewayi DSM 13479]
          Length = 229

 Score = 83.2 bits (204), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 64/216 (29%), Positives = 95/216 (43%), Gaps = 53/216 (24%)

Query: 732 RSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIH 791
           + L+ LE RI Y+F +R LL  A+TH SY        +H  N L  C             
Sbjct: 3   KKLHELEGRIGYRFTDRQLLTQAMTHSSYAN------EHRLNKLE-C------------- 42

Query: 792 FQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEE 851
                                          NERLEFLGD+V+E ++S  L+H +P+  E
Sbjct: 43  -------------------------------NERLEFLGDSVLEVVSSDFLYHKYPERPE 71

Query: 852 GGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFL 911
           G L   RA+IV    LA+ A+ I L  ++L   G +          +++  EAL+GA++L
Sbjct: 72  GDLTKIRASIVCEPTLAYCAEDIDLGAYLLLGKGEEATGGRGRASVVSDAMEALIGAIYL 131

Query: 912 DGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
           DGG   A +     +   N++  KQ  +  +  LQE
Sbjct: 132 DGGFANAKEFILRFIM--NDIEHKQLFFDSKTILQE 165



 Score = 43.5 bits (101), Expect = 0.59,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 964  KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITSD 1019
            K+L  LE   G  F   +LL +  T  S  Y N      L  N+RLEFLGD+VL++++SD
Sbjct: 3    KKLHELEGRIGYRFTDRQLLTQAMTHSS--YANEHRLNKLECNERLEFLGDSVLEVVSSD 60

Query: 1020 YLY 1022
            +LY
Sbjct: 61   FLY 63


>gi|302391792|ref|YP_003827612.1| RNAse III [Acetohalobium arabaticum DSM 5501]
 gi|302203869|gb|ADL12547.1| RNAse III [Acetohalobium arabaticum DSM 5501]
          Length = 234

 Score = 83.2 bits (204), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/113 (36%), Positives = 70/113 (61%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           N+  NERLEFLGD+V++ + S ++F+ +PD  EG LA  RA++V    LA  A+ + L  
Sbjct: 44  NLKDNERLEFLGDSVLDIVVSEYMFNRYPDYPEGKLAKMRASVVSAPTLAAKARELDLGR 103

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
           ++L  HG ++    +    +A+ FEAL+G+++LD  +D+A+     ++  D E
Sbjct: 104 YLLLGHGEEMTGGRKRSSILADAFEALVGSIYLDQDLDIAEDFIMKLMKVDIE 156



 Score = 44.7 bits (104), Expect = 0.27,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 964  KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYL 1021
            ++L+ L+    + F  + LL R  T +S    N  L L  N+RLEFLGD+VL ++ S+Y+
Sbjct: 8    EKLEELQSKIDIYFADLDLLQRALTHKSYANENRDLNLKDNERLEFLGDSVLDIVVSEYM 67

Query: 1022 Y 1022
            +
Sbjct: 68   F 68


>gi|30263852|ref|NP_846229.1| ribonuclease III [Bacillus anthracis str. Ames]
 gi|47529278|ref|YP_020627.1| ribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186699|ref|YP_029951.1| ribonuclease III [Bacillus anthracis str. Sterne]
 gi|49478414|ref|YP_037910.1| ribonuclease III [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|165873286|ref|ZP_02217894.1| ribonuclease III [Bacillus anthracis str. A0488]
 gi|167636662|ref|ZP_02394952.1| ribonuclease III [Bacillus anthracis str. A0442]
 gi|167642023|ref|ZP_02400254.1| ribonuclease III [Bacillus anthracis str. A0193]
 gi|170689645|ref|ZP_02880826.1| ribonuclease III [Bacillus anthracis str. A0465]
 gi|177655964|ref|ZP_02937116.1| ribonuclease III [Bacillus anthracis str. A0174]
 gi|190565836|ref|ZP_03018755.1| ribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
 gi|196035867|ref|ZP_03103269.1| ribonuclease III [Bacillus cereus W]
 gi|196042325|ref|ZP_03109601.1| ribonuclease III [Bacillus cereus NVH0597-99]
 gi|196047446|ref|ZP_03114658.1| ribonuclease III [Bacillus cereus 03BB108]
 gi|218904979|ref|YP_002452813.1| ribonuclease III [Bacillus cereus AH820]
 gi|225865830|ref|YP_002751208.1| ribonuclease III [Bacillus cereus 03BB102]
 gi|227813243|ref|YP_002813252.1| ribonuclease III [Bacillus anthracis str. CDC 684]
 gi|228916486|ref|ZP_04080052.1| Ribonuclease 3 [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228928897|ref|ZP_04091929.1| Ribonuclease 3 [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228935163|ref|ZP_04097990.1| Ribonuclease 3 [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228947568|ref|ZP_04109858.1| Ribonuclease 3 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229092891|ref|ZP_04224025.1| Ribonuclease 3 [Bacillus cereus Rock3-42]
 gi|229123363|ref|ZP_04252567.1| Ribonuclease 3 [Bacillus cereus 95/8201]
 gi|229186089|ref|ZP_04313258.1| Ribonuclease 3 [Bacillus cereus BGSC 6E1]
 gi|229599971|ref|YP_002868086.1| ribonuclease III [Bacillus anthracis str. A0248]
 gi|254683443|ref|ZP_05147303.1| ribonuclease III [Bacillus anthracis str. CNEVA-9066]
 gi|254721380|ref|ZP_05183169.1| ribonuclease III [Bacillus anthracis str. A1055]
 gi|254735887|ref|ZP_05193593.1| ribonuclease III [Bacillus anthracis str. Western North America
           USA6153]
 gi|254739520|ref|ZP_05197217.1| ribonuclease III [Bacillus anthracis str. Kruger B]
 gi|254751172|ref|ZP_05203211.1| ribonuclease III [Bacillus anthracis str. Vollum]
 gi|254756720|ref|ZP_05208749.1| ribonuclease III [Bacillus anthracis str. Australia 94]
 gi|376267744|ref|YP_005120456.1| Ribonuclease III [Bacillus cereus F837/76]
 gi|386737671|ref|YP_006210852.1| ribonuclease 3 [Bacillus anthracis str. H9401]
 gi|421507389|ref|ZP_15954309.1| ribonuclease III [Bacillus anthracis str. UR-1]
 gi|421639604|ref|ZP_16080195.1| ribonuclease III [Bacillus anthracis str. BF1]
 gi|423550402|ref|ZP_17526729.1| ribonuclease 3 [Bacillus cereus ISP3191]
 gi|38372420|sp|Q81WI8.1|RNC_BACAN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|81395098|sp|Q6HEW6.1|RNC_BACHK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735366|sp|B7JJT6.1|RNC_BACC0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807235|sp|C3P5Q0.1|RNC_BACAA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807236|sp|C3L778.1|RNC_BACAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807237|sp|C1EP73.1|RNC_BACC3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|30258496|gb|AAP27715.1| ribonuclease III [Bacillus anthracis str. Ames]
 gi|47504426|gb|AAT33102.1| ribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180626|gb|AAT56002.1| ribonuclease III [Bacillus anthracis str. Sterne]
 gi|49329970|gb|AAT60616.1| ribonuclease III [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|164710971|gb|EDR16540.1| ribonuclease III [Bacillus anthracis str. A0488]
 gi|167510022|gb|EDR85437.1| ribonuclease III [Bacillus anthracis str. A0193]
 gi|167527913|gb|EDR90729.1| ribonuclease III [Bacillus anthracis str. A0442]
 gi|170666390|gb|EDT17172.1| ribonuclease III [Bacillus anthracis str. A0465]
 gi|172079908|gb|EDT65015.1| ribonuclease III [Bacillus anthracis str. A0174]
 gi|190562755|gb|EDV16721.1| ribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
 gi|195991516|gb|EDX55482.1| ribonuclease III [Bacillus cereus W]
 gi|196021754|gb|EDX60449.1| ribonuclease III [Bacillus cereus 03BB108]
 gi|196026847|gb|EDX65478.1| ribonuclease III [Bacillus cereus NVH0597-99]
 gi|218539426|gb|ACK91824.1| ribonuclease III [Bacillus cereus AH820]
 gi|225790989|gb|ACO31206.1| ribonuclease III [Bacillus cereus 03BB102]
 gi|227006213|gb|ACP15956.1| ribonuclease III [Bacillus anthracis str. CDC 684]
 gi|228597265|gb|EEK54916.1| Ribonuclease 3 [Bacillus cereus BGSC 6E1]
 gi|228660139|gb|EEL15775.1| Ribonuclease 3 [Bacillus cereus 95/8201]
 gi|228690513|gb|EEL44296.1| Ribonuclease 3 [Bacillus cereus Rock3-42]
 gi|228812088|gb|EEM58419.1| Ribonuclease 3 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228824528|gb|EEM70333.1| Ribonuclease 3 [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228830704|gb|EEM76309.1| Ribonuclease 3 [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228843065|gb|EEM88147.1| Ribonuclease 3 [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|229264379|gb|ACQ46016.1| ribonuclease III [Bacillus anthracis str. A0248]
 gi|364513544|gb|AEW56943.1| Ribonuclease III [Bacillus cereus F837/76]
 gi|384387523|gb|AFH85184.1| Ribonuclease 3 [Bacillus anthracis str. H9401]
 gi|401190018|gb|EJQ97068.1| ribonuclease 3 [Bacillus cereus ISP3191]
 gi|401822523|gb|EJT21673.1| ribonuclease III [Bacillus anthracis str. UR-1]
 gi|403393269|gb|EJY90514.1| ribonuclease III [Bacillus anthracis str. BF1]
          Length = 245

 Score = 83.2 bits (204), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAAIV    L   A  +     +L 
Sbjct: 57  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 116

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G++        ++Y K NE  F   M Y 
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYK 176

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213


>gi|406997819|gb|EKE15836.1| hypothetical protein ACD_11C00103G0038 [uncultured bacterium]
          Length = 227

 Score = 83.2 bits (204), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 90/156 (57%), Gaps = 19/156 (12%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   + +L+  F +  EG L ++RA++V  + LA +AK +G+E+F
Sbjct: 37  LDHNERLEFLGDAVLELAVTEYLYGKFSN-PEGELTSWRASLVNGEMLASIAKELGVEEF 95

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ-VFSSVLYK-DNEVRFKQW 937
           +L + G         ++ +AN  EA++GA++LD G + A + +  +V+ K D+ ++ K +
Sbjct: 96  LLMSKGEAKDTGRARQYLLANSIEAIIGAIYLDQGYEEAKKFILDNVVIKLDDILKSKSY 155

Query: 938 M---YYPQHPLQEQE-------------PDGDRQWV 957
           +    Y Q   QE+E             PD DR +V
Sbjct: 156 LDSKSYFQEKSQEKEKTTPSYRVIKEWGPDHDRHFV 191



 Score = 44.3 bits (103), Expect = 0.35,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 966  LQYLEYSSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            ++ L    GV F  I LL +  T RS    N    L  N+RLEFLGD VL+L  ++YLY
Sbjct: 2    IESLSKKIGVKFKEISLLQQAVTHRSYLNENRGYKLDHNERLEFLGDAVLELAVTEYLY 60


>gi|343521181|ref|ZP_08758149.1| ribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
 gi|343396387|gb|EGV08924.1| ribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
          Length = 238

 Score = 83.2 bits (204), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 19/153 (12%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGD V+ FI S+ L+  FP+ +EG L   R+ +V  +  ++ A+   L  ++L 
Sbjct: 47  NERLEFLGDVVLGFIVSVELYEQFPNSDEGYLTKIRSKVVCEESFSNAARTFNLGKYLLL 106

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV-----FSSVLYKDNEVRF-KQ 936
             G D     +    +A+ FEAL GAL+LDGG++V   +     F +V+Y  N+  F K 
Sbjct: 107 GKGEDNFGGRDRNSILADTFEALFGALYLDGGLEVVTDIANKFFFDTVVYGINKNIFIKD 166

Query: 937 WMYYPQHPLQ-------------EQEPDGDRQW 956
           +  Y Q                 E+ PD D+++
Sbjct: 167 YKSYLQEYFHKGSSTKITYTLVSERGPDHDKEF 199


>gi|357058566|ref|ZP_09119416.1| ribonuclease III [Selenomonas infelix ATCC 43532]
 gi|355373701|gb|EHG21012.1| ribonuclease III [Selenomonas infelix ATCC 43532]
          Length = 238

 Score = 83.2 bits (204), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 51/130 (39%), Positives = 77/130 (59%), Gaps = 1/130 (0%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           ITHNERLEFLGDAV+E  +S +L+  FPD  EG L   RA++VQ++ LA LA+++ L  +
Sbjct: 47  ITHNERLEFLGDAVLELASSTYLYARFPDCTEGELTKMRASLVQSETLARLARQLDLGSY 106

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA-DQVFSSVLYKDNEVRFKQWM 938
           +    G  L    + ++ + N FEA++GA++LD G + A D V   +  +   VR     
Sbjct: 107 LRLGRGELLGGGADRQNNLENAFEAVIGAVYLDRGWETAQDYVARQLASEATLVRHSHVS 166

Query: 939 YYPQHPLQEQ 948
           +  +  LQE 
Sbjct: 167 HDYKTALQEH 176



 Score = 39.7 bits (91), Expect = 9.4,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 965  QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL---TLGSNQRLEFLGDTVLQLITSDYL 1021
            +L  L    GV F+ + LL    T  S  YTN     +  N+RLEFLGD VL+L +S YL
Sbjct: 12   ELVRLSGQIGVSFHDLSLLDEALTHPS--YTNEKKDAITHNERLEFLGDAVLELASSTYL 69

Query: 1022 Y 1022
            Y
Sbjct: 70   Y 70


>gi|347730887|ref|ZP_08863997.1| ribonuclease III [Desulfovibrio sp. A2]
 gi|347520393|gb|EGY27528.1| ribonuclease III [Desulfovibrio sp. A2]
          Length = 230

 Score = 83.2 bits (204), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 45/110 (40%), Positives = 62/110 (56%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           + ++ HNERLEFLGDAV+E   S  LF  FP   EG L   RA +V    LA LA+ + L
Sbjct: 33  QDHVEHNERLEFLGDAVLELCVSEELFARFPAAREGDLTRMRARLVSKPALAELARELKL 92

Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           E F+    G +     E    +++  EA++GA+FLDGG + A  V   +L
Sbjct: 93  EQFLRLGRGEESQGGRERSSLLSDALEAMLGAVFLDGGYERARAVVRHIL 142


>gi|406994955|gb|EKE13831.1| hypothetical protein ACD_12C00799G0004 [uncultured bacterium]
          Length = 230

 Score = 83.2 bits (204), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/113 (37%), Positives = 68/113 (60%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           +S    NERLEFLGD+V+  ITS++LF  +P+++EG     ++AIV+   LA  +K+I L
Sbjct: 37  KSPFQSNERLEFLGDSVLSLITSVYLFKHYPELKEGDYTEIKSAIVKMDSLAEASKKIEL 96

Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 929
             ++L + G +        + +A+CFEAL+  +FLD   + A +     L+KD
Sbjct: 97  NKYLLLSKGEEKGAGRTNNNILADCFEALIAGIFLDRNFEAAYKFVVDFLFKD 149



 Score = 41.2 bits (95), Expect = 2.8,   Method: Composition-based stats.
 Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 969  LEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            LE +  + F    LL  VF  RS    +      SN+RLEFLGD+VL LITS YL+
Sbjct: 8    LESTIKIKFKDRVLLENVFIHRSYLNEHKKSPFQSNERLEFLGDSVLSLITSVYLF 63


>gi|149200057|ref|ZP_01877082.1| ribonuclease III [Lentisphaera araneosa HTCC2155]
 gi|149136815|gb|EDM25243.1| ribonuclease III [Lentisphaera araneosa HTCC2155]
          Length = 232

 Score = 83.2 bits (204), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 82/196 (41%), Gaps = 52/196 (26%)

Query: 733 SLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHF 792
           S  VLED ++ KF    LL+ ALTH SY                                
Sbjct: 4   SFKVLEDNLKCKFNQPTLLREALTHRSY-------------------------------- 31

Query: 793 QNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEG 852
                               K  ++  +  N+RLEFLGDAV+E I S +LF  +PD  EG
Sbjct: 32  --------------------KFESKEPLNDNQRLEFLGDAVIELIVSRYLFDRYPDAPEG 71

Query: 853 GLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLD 912
            L  YRAA+V+   L   AK I L  ++L           E    +++ +EALM A++LD
Sbjct: 72  DLTKYRAALVKESALFECAKSIKLGKYLLLGKSELKSQGNERPSNLSDAYEALMAAIYLD 131

Query: 913 GGIDVADQVFSSVLYK 928
            G + A     ++L K
Sbjct: 132 QGYETAQSFHINILEK 147



 Score = 43.5 bits (101), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 977  FNHIRLLARVFTTRSMGY-TNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            FN   LL    T RS  + +   L  NQRLEFLGD V++LI S YL+
Sbjct: 16   FNQPTLLREALTHRSYKFESKEPLNDNQRLEFLGDAVIELIVSRYLF 62


>gi|422012064|ref|ZP_16358804.1| ribonuclease III [Actinomyces georgiae F0490]
 gi|394760973|gb|EJF43430.1| ribonuclease III [Actinomyces georgiae F0490]
          Length = 240

 Score = 83.2 bits (204), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 45/111 (40%), Positives = 65/111 (58%), Gaps = 1/111 (0%)

Query: 812 RKVATESN-ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
           R  A E+  I +NERLEFLGD+V+  + +  LFH +PD+ E  L+  RAA V    LA  
Sbjct: 39  RSYANEAGGIANNERLEFLGDSVLSVVIAERLFHDYPDVAESDLSRMRAATVSQAPLASA 98

Query: 871 AKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           A+RIGL D++    G  L    +    +++ FEAL+GA +L  G+  A +V
Sbjct: 99  ARRIGLGDYVYLGKGESLHGGRDKDSILSDTFEALIGATYLTHGLQAARRV 149


>gi|281205614|gb|EFA79803.1| hypothetical protein PPL_06622 [Polysphondylium pallidum PN500]
          Length = 1043

 Score = 83.2 bits (204), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 100/201 (49%), Gaps = 26/201 (12%)

Query: 823  NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
            N+RLE+ GD++++F  + +L+ ++P+  EG L T R+ +  N +L ++  +  ++D +  
Sbjct: 703  NQRLEYFGDSILKFCITYYLYFLYPNAPEGFLTTKRSEVTSNTYLQNICDQTSIDDILRL 762

Query: 883  AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 942
                 L +  + K   A+  EAL  A++L+ GI+V  +   ++L+K   V F        
Sbjct: 763  G----LSNTEDYKKPKADVIEALFAAVYLECGINVVYEFIINLLFKIENVVF-------- 810

Query: 943  HPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFN-HIRLLARVFTTRSMGYTNLTLGS 1001
                   P    +   ++PL       E    V+FN +I +        +M  ++    +
Sbjct: 811  -------PTYKCEHTNETPL------SESQKSVLFNMNINIKDTCLFQEAMNCSSDPKMN 857

Query: 1002 NQRLEFLGDTVLQLITSDYLY 1022
             QRLEFLGD+ + L+ S++LY
Sbjct: 858  YQRLEFLGDSYIDLVVSEFLY 878



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 69/151 (45%), Gaps = 11/151 (7%)

Query: 824  ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
            +RLEFLGD+ ++ + S  L+H FP  +EG L+  RA +V+N+ LA+ A  + +       
Sbjct: 859  QRLEFLGDSYIDLVVSEFLYHNFPREQEGFLSQTRALLVRNEKLANTANHLRIRQ----- 913

Query: 884  HGSDLCHEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQ 942
              S     V     M + FE+  G L LDGG+ D    +   +    N V      +Y  
Sbjct: 914  --SIDPSVVPTTKRMGDLFESFTGCLLLDGGLQDTKSFLIKHLPLTTNHVNEMIESHYAS 971

Query: 943  H---PLQEQEPDGDRQWVEQSPLLKQLQYLE 970
            +   PL  QEP  D       PL    QY E
Sbjct: 972  NRPIPLTSQEPIPDSNQDITLPLKLLEQYEE 1002


>gi|163941587|ref|YP_001646471.1| ribonuclease III [Bacillus weihenstephanensis KBAB4]
 gi|229013032|ref|ZP_04170197.1| Ribonuclease 3 [Bacillus mycoides DSM 2048]
 gi|229134657|ref|ZP_04263466.1| Ribonuclease 3 [Bacillus cereus BDRD-ST196]
 gi|423489025|ref|ZP_17465707.1| ribonuclease 3 [Bacillus cereus BtB2-4]
 gi|423494750|ref|ZP_17471394.1| ribonuclease 3 [Bacillus cereus CER057]
 gi|423498458|ref|ZP_17475075.1| ribonuclease 3 [Bacillus cereus CER074]
 gi|423518539|ref|ZP_17495020.1| ribonuclease 3 [Bacillus cereus HuA2-4]
 gi|423592155|ref|ZP_17568186.1| ribonuclease 3 [Bacillus cereus VD048]
 gi|423598840|ref|ZP_17574840.1| ribonuclease 3 [Bacillus cereus VD078]
 gi|423661311|ref|ZP_17636480.1| ribonuclease 3 [Bacillus cereus VDM022]
 gi|423669423|ref|ZP_17644452.1| ribonuclease 3 [Bacillus cereus VDM034]
 gi|423674398|ref|ZP_17649337.1| ribonuclease 3 [Bacillus cereus VDM062]
 gi|229564349|sp|A9VT87.1|RNC_BACWK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|163863784|gb|ABY44843.1| Ribonuclease III [Bacillus weihenstephanensis KBAB4]
 gi|228648703|gb|EEL04729.1| Ribonuclease 3 [Bacillus cereus BDRD-ST196]
 gi|228748286|gb|EEL98146.1| Ribonuclease 3 [Bacillus mycoides DSM 2048]
 gi|401150843|gb|EJQ58295.1| ribonuclease 3 [Bacillus cereus CER057]
 gi|401160507|gb|EJQ67885.1| ribonuclease 3 [Bacillus cereus CER074]
 gi|401160747|gb|EJQ68122.1| ribonuclease 3 [Bacillus cereus HuA2-4]
 gi|401232288|gb|EJR38790.1| ribonuclease 3 [Bacillus cereus VD048]
 gi|401237110|gb|EJR43567.1| ribonuclease 3 [Bacillus cereus VD078]
 gi|401298550|gb|EJS04150.1| ribonuclease 3 [Bacillus cereus VDM034]
 gi|401301352|gb|EJS06941.1| ribonuclease 3 [Bacillus cereus VDM022]
 gi|401309949|gb|EJS15282.1| ribonuclease 3 [Bacillus cereus VDM062]
 gi|402432273|gb|EJV64332.1| ribonuclease 3 [Bacillus cereus BtB2-4]
          Length = 245

 Score = 82.8 bits (203), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAAIV    L   A  +     +L 
Sbjct: 57  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLL 116

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G++        V+Y K NE  F   M Y 
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGYLKEVVYPKINEGAFSHVMDYK 176

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 177 SQLQELIQRDGSGNVEYQILQEKGPAHNREFVSRVTL 213


>gi|229061452|ref|ZP_04198797.1| Ribonuclease 3 [Bacillus cereus AH603]
 gi|423367893|ref|ZP_17345325.1| ribonuclease 3 [Bacillus cereus VD142]
 gi|423511883|ref|ZP_17488414.1| ribonuclease 3 [Bacillus cereus HuA2-1]
 gi|228717875|gb|EEL69523.1| Ribonuclease 3 [Bacillus cereus AH603]
 gi|401082754|gb|EJP91019.1| ribonuclease 3 [Bacillus cereus VD142]
 gi|402450144|gb|EJV81978.1| ribonuclease 3 [Bacillus cereus HuA2-1]
          Length = 245

 Score = 82.8 bits (203), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAAIV    L   A  +     +L 
Sbjct: 57  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLL 116

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G++        V+Y K NE  F   M Y 
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGYLKEVVYPKINEGAFSHVMDYK 176

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213


>gi|322373156|ref|ZP_08047692.1| ribonuclease III [Streptococcus sp. C150]
 gi|419706593|ref|ZP_14234111.1| Ribonuclease 3 [Streptococcus salivarius PS4]
 gi|321278198|gb|EFX55267.1| ribonuclease III [Streptococcus sp. C150]
 gi|383283628|gb|EIC81574.1| Ribonuclease 3 [Streptococcus salivarius PS4]
          Length = 229

 Score = 82.8 bits (203), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 65/108 (60%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDA ++ + S++L++ +P+  EG ++  R+ IV+ + LA   K  G E 
Sbjct: 39  NISHNERLEFLGDAALQLVISVYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQ 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           F+    G +     E    + + +EA +GAL+LD G+   ++  + V+
Sbjct: 99  FIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGLPAVEKFLNKVM 146



 Score = 47.4 bits (111), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 6/60 (10%)

Query: 967  QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            Q LE   G++F+   LL   FT  S  Y N    L +  N+RLEFLGD  LQL+ S YLY
Sbjct: 6    QKLEQDFGIVFSQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAALQLVISVYLY 63


>gi|302872013|ref|YP_003840649.1| ribonuclease III [Caldicellulosiruptor obsidiansis OB47]
 gi|302574872|gb|ADL42663.1| ribonuclease III [Caldicellulosiruptor obsidiansis OB47]
          Length = 222

 Score = 82.8 bits (203), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/117 (36%), Positives = 71/117 (60%)

Query: 810 LGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAH 869
           L  K AT SN    ERLEFLGDA +E   S +L+  FP++ EG L   RAA+V +Q L+ 
Sbjct: 22  LTHKSATHSNKNCYERLEFLGDAALELAVSKYLYVYFPELSEGELTNIRAAVVCSQTLSK 81

Query: 870 LAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           +A+++ L++ +++     +    E K  +A+  EAL GA+F++ G D  +++  ++L
Sbjct: 82  VAEKLNLKNHIIFGKREKMEKFHENKSILADVLEALFGAIFIESGFDTVEKIIVNLL 138


>gi|189499162|ref|YP_001958632.1| Ribonuclease III [Chlorobium phaeobacteroides BS1]
 gi|189494603|gb|ACE03151.1| Ribonuclease III [Chlorobium phaeobacteroides BS1]
          Length = 271

 Score = 82.8 bits (203), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 62/94 (65%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           N+RLEFLGDAV++ I S  L+ VFP+ +EG L++ RA IV  + LA  A +I L + +L 
Sbjct: 77  NQRLEFLGDAVLDLIISELLYTVFPESDEGKLSSNRAKIVNRKSLAGFAGKISLGEHLLI 136

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
              +D  +      ++A+ FEAL+GAL+LD G++
Sbjct: 137 GETADKINIQTSTSSLADAFEALIGALYLDKGLE 170


>gi|374854311|dbj|BAL57196.1| ribonuclease III [uncultured prokaryote]
          Length = 239

 Score = 82.8 bits (203), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 4/127 (3%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV++FI    ++H +P++ EG L   R+A+V+N+ LA  A++I L   +  
Sbjct: 47  NERLEFLGDAVLDFIVGEWVYHHYPELREGELTRLRSALVRNEQLASFARQIDLGAALRL 106

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYY-- 940
             G       +    + + FEAL+GAL+LD G++ A +     L K   V   +W +   
Sbjct: 107 GAGEAASGARQRTSLLGSAFEALIGALYLDAGLETASRFVRPFLEK--TVAALEWTHLLD 164

Query: 941 PQHPLQE 947
           P+  LQE
Sbjct: 165 PKSRLQE 171


>gi|257440564|ref|ZP_05616319.1| ribonuclease III [Faecalibacterium prausnitzii A2-165]
 gi|257196887|gb|EEU95171.1| ribonuclease III [Faecalibacterium prausnitzii A2-165]
          Length = 224

 Score = 82.8 bits (203), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 81/150 (54%), Gaps = 12/150 (8%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGD+V++ +++ +LFH + D  EG L   R+++V    L   A+ I L ++
Sbjct: 36  VQHNERLEFLGDSVLQIVSADYLFHAYADRPEGDLTRIRSSLVSEGALFQFAQEINLGEY 95

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK------DNEVR 933
           +    G + C        +++ FEA++ AL+LDGG++VA       + +      D + R
Sbjct: 96  LRLGRGEERCGGRTRPSVVSDAFEAVIAALYLDGGMEVAKSFILPFITEGKHAEADYKTR 155

Query: 934 FKQWMYY-PQHPL-----QEQEPDGDRQWV 957
            ++ +   P+  L     QE  PD D+ +V
Sbjct: 156 LQEIVQQNPEERLSYVVEQESGPDHDKHFV 185



 Score = 41.6 bits (96), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 969  LEYSSGVIFNHIRLLARVFTTRSMGYTNLT-LGSNQRLEFLGDTVLQLITSDYLY 1022
            LE   G  F + +LL    T  S    + T +  N+RLEFLGD+VLQ++++DYL+
Sbjct: 5    LETIIGYKFKNPKLLETALTHTSYANESRTPVQHNERLEFLGDSVLQIVSADYLF 59


>gi|440510110|ref|YP_007347546.1| ribonuclease 3 [Candidatus Blochmannia chromaiodes str. 640]
 gi|440454323|gb|AGC03815.1| ribonuclease 3 [Candidatus Blochmannia chromaiodes str. 640]
          Length = 226

 Score = 82.8 bits (203), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 74/138 (53%), Gaps = 14/138 (10%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDA++ ++ +  L+H FP I EGG++  RA +V+   LA LA+   L D++ 
Sbjct: 33  HNERLEFLGDAILNYVIANLLYHRFPHISEGGMSRMRANLVRENTLATLAREFNLGDYLQ 92

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV--------------FSSVLY 927
              G       + +  +AN  EAL+G +FLD  I   + +              ++    
Sbjct: 93  LGQGELKSGGYQRESILANTIEALIGGIFLDSNIQTIEILIINWYKIRIDHMDPYAYDTQ 152

Query: 928 KDNEVRFKQWMYYPQHPL 945
           KD++ R +++M + + PL
Sbjct: 153 KDSKTRLQEYMQHRRLPL 170


>gi|423483439|ref|ZP_17460129.1| ribonuclease 3 [Bacillus cereus BAG6X1-2]
 gi|401140990|gb|EJQ48545.1| ribonuclease 3 [Bacillus cereus BAG6X1-2]
          Length = 245

 Score = 82.8 bits (203), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAAIV    L   A  +     +L 
Sbjct: 57  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLL 116

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G++        V+Y K NE  F   M Y 
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGYLKEVVYPKINEGAFSHVMDYK 176

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213


>gi|220931875|ref|YP_002508783.1| Ribonuclease III [Halothermothrix orenii H 168]
 gi|219993185|gb|ACL69788.1| Ribonuclease III [Halothermothrix orenii H 168]
          Length = 236

 Score = 82.8 bits (203), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 43/121 (35%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 816 TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
           ++ ++  NERLEFLGD+V+  + S +L+  FP+  EG LA  RA IV + HLA  A+ +G
Sbjct: 41  SDPDLEDNERLEFLGDSVLSIVISTYLYKNFPEYNEGELAKMRAYIVSSSHLACKARELG 100

Query: 876 LEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFK 935
           L  ++L   G +L    E +  +A+  EA++GA++LD G +    +  +  +KD+  +  
Sbjct: 101 LGKYILMGKGEELNGGRERESILADTLEAVIGAIYLDQGFNTITDLLIN-FFKDDVKKLD 159

Query: 936 Q 936
           Q
Sbjct: 160 Q 160



 Score = 42.7 bits (99), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 977  FNHIRLLARVFTTRSMGY--TNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            FN I LL +  T +S  +  ++  L  N+RLEFLGD+VL ++ S YLY
Sbjct: 21   FNDISLLQKAVTHKSFVHEKSDPDLEDNERLEFLGDSVLSIVISTYLY 68


>gi|229174515|ref|ZP_04302047.1| Ribonuclease 3 [Bacillus cereus MM3]
 gi|423401309|ref|ZP_17378482.1| ribonuclease 3 [Bacillus cereus BAG2X1-2]
 gi|423457968|ref|ZP_17434765.1| ribonuclease 3 [Bacillus cereus BAG5X2-1]
 gi|423477987|ref|ZP_17454702.1| ribonuclease 3 [Bacillus cereus BAG6X1-1]
 gi|228609075|gb|EEK66365.1| Ribonuclease 3 [Bacillus cereus MM3]
 gi|401148352|gb|EJQ55845.1| ribonuclease 3 [Bacillus cereus BAG5X2-1]
 gi|401654299|gb|EJS71842.1| ribonuclease 3 [Bacillus cereus BAG2X1-2]
 gi|402428149|gb|EJV60246.1| ribonuclease 3 [Bacillus cereus BAG6X1-1]
          Length = 245

 Score = 82.8 bits (203), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAAIV    L   A  +     +L 
Sbjct: 57  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 116

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G++        ++Y K NE  F   M Y 
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYK 176

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213


>gi|260892849|ref|YP_003238946.1| ribonuclease III [Ammonifex degensii KC4]
 gi|260864990|gb|ACX52096.1| ribonuclease III [Ammonifex degensii KC4]
          Length = 235

 Score = 82.8 bits (203), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 63/99 (63%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HN+RLEFLGD+V+  + S +L+  FP+  EG L   RAA+V    LA +A+ +G+ + 
Sbjct: 36  VEHNQRLEFLGDSVLSLVVSDYLYRTFPEKSEGELTRLRAAVVCEASLARVAEELGIGEA 95

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
           +L   G +     +    +A+ FEAL+GA++LD G++VA
Sbjct: 96  LLLGRGEEKSGGRKRPSLLADAFEALLGAIYLDQGLEVA 134



 Score = 47.0 bits (110), Expect = 0.055,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 33/57 (57%)

Query: 966  LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            L  L+   G+ +   +LL    T  S  Y +  +  NQRLEFLGD+VL L+ SDYLY
Sbjct: 3    LAKLKDKLGISWKEEKLLRLALTHPSYAYEHPGVEHNQRLEFLGDSVLSLVVSDYLY 59


>gi|338730556|ref|YP_004659948.1| RNAse III [Thermotoga thermarum DSM 5069]
 gi|335364907|gb|AEH50852.1| RNAse III [Thermotoga thermarum DSM 5069]
          Length = 241

 Score = 82.8 bits (203), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 39/110 (35%), Positives = 67/110 (60%)

Query: 812 RKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLA 871
           +K    +++  NERLEFLGD+V+E + S +L+  F +  EG +A  +AA+   + LA +A
Sbjct: 39  QKQKGRNDVISNERLEFLGDSVIEMLLSDYLYKNFEEFSEGNMAKIKAAVASEEALARVA 98

Query: 872 KRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           + I L +F+    G ++    +    +A+  EA++GAL+LDGG +V  +V
Sbjct: 99  RDINLGEFLFLGRGEEITGGRDRDSILADALEAVIGALYLDGGFEVVKRV 148


>gi|193211801|ref|YP_001997754.1| Ribonuclease III [Chlorobaculum parvum NCIB 8327]
 gi|193085278|gb|ACF10554.1| Ribonuclease III [Chlorobaculum parvum NCIB 8327]
          Length = 276

 Score = 82.8 bits (203), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 76/135 (56%), Gaps = 15/135 (11%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           N+RLEFLGDAV++ + S HLF ++P+ +EG L++ RA IV  + LA  A+ + L + ++ 
Sbjct: 79  NQRLEFLGDAVLDLLISEHLFRLYPESDEGHLSSNRAKIVNRKALAAFARELKLGEHLII 138

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ-VFSSVL--------------Y 927
              ++L        A+A+ FEAL+GA++LD G+D A + + + V+              Y
Sbjct: 139 GESANLQKIRTSDSALADAFEALVGAIYLDQGLDGAKRFIMNHVITMVDLNRIVEAEFNY 198

Query: 928 KDNEVRFKQWMYYPQ 942
           K   + F Q    PQ
Sbjct: 199 KSRLIEFSQSHQLPQ 213


>gi|422344902|ref|ZP_16425825.1| ribonuclease III [Selenomonas noxia F0398]
 gi|355376044|gb|EHG23305.1| ribonuclease III [Selenomonas noxia F0398]
          Length = 238

 Score = 82.8 bits (203), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 77/133 (57%), Gaps = 1/133 (0%)

Query: 816 TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            +  I HNERLEFLGDAV+E  +S +L+  FPD  EG L   RA++VQ+  LA LA+ + 
Sbjct: 43  AKDTIPHNERLEFLGDAVLELASSTYLYARFPDCSEGELTKMRASLVQSDTLARLARALD 102

Query: 876 LEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD-NEVRF 934
           L   +    G       + ++ + N FEA++GA++LD G + A +  +  L ++ + ++ 
Sbjct: 103 LGSCLRLGRGEFHNGGADRQNNLENAFEAVIGAVYLDAGWETAKEYVARQLSREADHIKK 162

Query: 935 KQWMYYPQHPLQE 947
            Q ++  +  LQE
Sbjct: 163 AQVVHDYKTTLQE 175



 Score = 46.2 bits (108), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 965  QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL---TLGSNQRLEFLGDTVLQLITSDYL 1021
            QL  L    GV FN   LL    T  S  YTN    T+  N+RLEFLGD VL+L +S YL
Sbjct: 12   QLMRLSAEMGVSFNDFALLDEALTHPS--YTNEAKDTIPHNERLEFLGDAVLELASSTYL 69

Query: 1022 Y 1022
            Y
Sbjct: 70   Y 70


>gi|167752469|ref|ZP_02424596.1| hypothetical protein ALIPUT_00720 [Alistipes putredinis DSM 17216]
 gi|167659538|gb|EDS03668.1| ribonuclease III [Alistipes putredinis DSM 17216]
          Length = 264

 Score = 82.8 bits (203), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 26/192 (13%)

Query: 804 INIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQ 863
           + ++ K    V  +    +NERLEFLGDAV+E +TS +L+  FPD +EG L   R+ IV 
Sbjct: 39  LALIHKSASLVLADGRQINNERLEFLGDAVIEAVTSDYLYIEFPDRQEGFLTQLRSKIVS 98

Query: 864 NQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFS 923
            Q L  +A+ IGL+ +++    ++       KH   + FEA++GA++LD G + A+++  
Sbjct: 99  RQSLNTIARTIGLDRYVI----ANPTGSTNQKHIYGDAFEAMIGAIYLDQGYEFANRLLI 154

Query: 924 SVLY---------KDNEVRFK----QWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLE 970
           + +Y          D E  FK    +W     H +  +   G R +    P+        
Sbjct: 155 NNIYYRYLNLDNLTDEETDFKSRLIEWCQKTHHTIAFETVHG-RNYSSNHPI-------- 205

Query: 971 YSSGVIFNHIRL 982
           + + V+ + IR+
Sbjct: 206 FDATVVIDGIRV 217


>gi|304436759|ref|ZP_07396727.1| ribonuclease III [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370239|gb|EFM23896.1| ribonuclease III [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 238

 Score = 82.8 bits (203), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 43/97 (44%), Positives = 61/97 (62%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDAV+E   S +L+  +P   EG L   RA++VQ++ LA LA+R+ L   + 
Sbjct: 49  HNERLEFLGDAVLELAISTYLYDAYPHCAEGELTKMRASLVQSETLARLARRLHLGAHLR 108

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
              G  L    E ++ + N FEA++GA++LD G D A
Sbjct: 109 MGRGEMLGGGAERQNNLENVFEAVIGAVYLDRGWDAA 145


>gi|336233266|ref|YP_004590012.1| ribonuclease III [Buchnera aphidicola (Cinara tujafilina)]
 gi|335345207|gb|AEH39753.1| ribonuclease III [Buchnera aphidicola (Cinara tujafilina)]
          Length = 226

 Score = 82.8 bits (203), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 75/140 (53%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           ++I HNERLEFLGD+++ FI +  L+H FP++ EGG++  RA +V+   LA +A    L 
Sbjct: 32  ASIKHNERLEFLGDSILNFIIAKKLYHYFPEVNEGGMSRMRATLVRGNTLAEIACEFSLG 91

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV--------FSSV---- 925
           +++    G       + +  +AN  EA++  +FLD  I   +++        F  +    
Sbjct: 92  NYLQLGQGEQKSGGFKRESILANTIEAIIAGIFLDSNIYTVEKIVLKWYQYRFKKISPFN 151

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
           + KD + R ++++     PL
Sbjct: 152 IQKDPKTRLQEYLQAKHFPL 171


>gi|404493023|ref|YP_006717129.1| ribonuclease III [Pelobacter carbinolicus DSM 2380]
 gi|90101632|sp|Q3A4Q8.1|RNC_PELCD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|77545087|gb|ABA88649.1| ribonuclease III [Pelobacter carbinolicus DSM 2380]
          Length = 232

 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 82/197 (41%), Gaps = 55/197 (27%)

Query: 732 RSLNVLEDRIQYKFQNRYLLQLALTHPSY--RENFGTNPDHARNSLSNCGVRQPEYGDRR 789
           +S  +LED I Y F N+ LL  ALTH S+   +N  T PD                    
Sbjct: 5   KSAALLEDTIDYVFDNQALLLEALTHKSFSNEQNDRTEPD-------------------- 44

Query: 790 IHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDI 849
                                            NERLEFLGDAV+  + S ++F  FP +
Sbjct: 45  ---------------------------------NERLEFLGDAVLGVVVSHYIFRTFPHL 71

Query: 850 EEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGAL 909
            EG L   R+ +V  + L  + K I L D+M    G +     +    +AN  EAL+GA+
Sbjct: 72  PEGELTRIRSEVVSEKGLTVIGKAICLGDYMRLGKGEERSGGRQKSSLLANTMEALLGAV 131

Query: 910 FLDGGIDVADQVFSSVL 926
           F DGG D   +V  ++ 
Sbjct: 132 FCDGGFDSVRRVIEALF 148


>gi|345870601|ref|ZP_08822552.1| Ribonuclease 3 [Thiorhodococcus drewsii AZ1]
 gi|343921414|gb|EGV32130.1| Ribonuclease 3 [Thiorhodococcus drewsii AZ1]
          Length = 225

 Score = 82.8 bits (203), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/139 (33%), Positives = 75/139 (53%), Gaps = 12/139 (8%)

Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
           T+NERLEFLGDA++ F+ +  L   FP  +EG L+  RA++V+ + LA LA+ + L D++
Sbjct: 34  TNNERLEFLGDALIGFVIAETLCLRFPQADEGTLSRLRASLVKRESLAKLARGLKLGDYL 93

Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY------------K 928
               G            +A+  EA+ GA++LDGG D A +V  ++              K
Sbjct: 94  RLGAGELRTGGHARDSILADALEAVFGAVYLDGGFDAARKVVLNLFAGRLEQTDAAHAGK 153

Query: 929 DNEVRFKQWMYYPQHPLQE 947
           D + R ++W+   + PL E
Sbjct: 154 DPKTRLQEWLQSRKRPLPE 172


>gi|292670166|ref|ZP_06603592.1| ribonuclease III [Selenomonas noxia ATCC 43541]
 gi|292648118|gb|EFF66090.1| ribonuclease III [Selenomonas noxia ATCC 43541]
          Length = 238

 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 76/129 (58%), Gaps = 1/129 (0%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I HNERLEFLGDAV+E  +S +L+  FPD  EG L   RA++VQ+  LA LA+ + L   
Sbjct: 47  IPHNERLEFLGDAVLELASSTYLYARFPDCSEGELTKMRASLVQSNTLARLARALDLGSC 106

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD-NEVRFKQWM 938
           +    G       + ++ + N FEA++GA++LD G + A +  +  L ++ + ++  Q +
Sbjct: 107 LRLGRGEFHNGGADRQNNLENAFEAVIGAVYLDAGWETAKEYVARQLSREADHIKKAQVV 166

Query: 939 YYPQHPLQE 947
           +  +  LQE
Sbjct: 167 HDYKTTLQE 175



 Score = 47.4 bits (111), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 35/63 (55%), Gaps = 5/63 (7%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL---TLGSNQRLEFLGDTVLQLITSD 1019
            L QL  L    GV FN   LL    T  S  YTN    T+  N+RLEFLGD VL+L +S 
Sbjct: 10   LAQLMRLSAEMGVSFNDFALLDEALTHPS--YTNEAKDTIPHNERLEFLGDAVLELASST 67

Query: 1020 YLY 1022
            YLY
Sbjct: 68   YLY 70


>gi|358051770|ref|ZP_09145878.1| ribonuclease III [Staphylococcus simiae CCM 7213]
 gi|357258741|gb|EHJ08690.1| ribonuclease III [Staphylococcus simiae CCM 7213]
          Length = 243

 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 61/108 (56%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   S +LF   PD+ EG L   RA IV    L   A +IGL + 
Sbjct: 52  LDHNERLEFLGDAVLELTVSRYLFDKHPDLPEGNLTKMRATIVCEPSLVIFANKIGLNEI 111

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          +++ FEA +GAL+LD G+D+  Q    V++
Sbjct: 112 ILLGKGEEKTGGRTRPSLISDAFEAFIGALYLDQGLDIVWQFAEKVIF 159


>gi|306833964|ref|ZP_07467088.1| ribonuclease III [Streptococcus bovis ATCC 700338]
 gi|336064708|ref|YP_004559567.1| ribonuclease III [Streptococcus pasteurianus ATCC 43144]
 gi|304423965|gb|EFM27107.1| ribonuclease III [Streptococcus bovis ATCC 700338]
 gi|334282908|dbj|BAK30481.1| ribonuclease III [Streptococcus pasteurianus ATCC 43144]
          Length = 228

 Score = 82.8 bits (203), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 4/132 (3%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDAV++ + S +LF  +P   EG L+  R+ IV+ + LA  ++  G ++
Sbjct: 39  NISHNERLEFLGDAVLQLLISQYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDE 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRF 934
           F+   +G +          + + FEA +GAL +D G++  ++  + V+     K N  R 
Sbjct: 99  FIKLGNGEEKSGGRNRDTILGDLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEKGNFERV 158

Query: 935 KQWMYYPQHPLQ 946
           K +    Q  LQ
Sbjct: 159 KDYKTTLQELLQ 170



 Score = 44.7 bits (104), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 6/58 (10%)

Query: 969  LEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            L+   G++F    LL   FT  S  Y N    L +  N+RLEFLGD VLQL+ S YL+
Sbjct: 8    LQQDFGIVFEDKTLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISQYLF 63


>gi|328871085|gb|EGG19456.1| hypothetical protein DFA_00033 [Dictyostelium fasciculatum]
          Length = 1106

 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 96/200 (48%), Gaps = 26/200 (13%)

Query: 823  NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
            N+RLEFLGD+V++F T+ +L+  +P + EG L + R+ I  N +L    +R  + D + +
Sbjct: 736  NQRLEFLGDSVLKFCTTYYLYFKYPQLREGQLTSKRSEITSNSYLLSKCERWNVVDLLRF 795

Query: 883  AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 942
                D      +K   A+  EA+ GALF++ G+  A Q     +++D E  F Q+  Y  
Sbjct: 796  TVTED------MKKPKADVMEAIFGALFIERGVKEAYQFIVQNIFQDPE--FSQFPEYLC 847

Query: 943  HPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSN 1002
              + E  P        QS  L  L+            I +       +SM  +   L S 
Sbjct: 848  SCISELPPSR-----RQSKFLFDLR------------INIKKTCLFQQSMTCSG-DLDSY 889

Query: 1003 QRLEFLGDTVLQLITSDYLY 1022
            +RLEFLGD  L L+ S +LY
Sbjct: 890  ERLEFLGDAFLDLVISKHLY 909



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 57/93 (61%), Gaps = 6/93 (6%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           ERLEFLGDA ++ + S HL+  FPD +EG L+T RA +V+N+ LA ++++I L   +   
Sbjct: 890 ERLEFLGDAFLDLVISKHLYDQFPDKQEGFLSTARAGLVKNEALAQISQKINLSLAI--- 946

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
             SD      +K  + +  EA +G L LD G++
Sbjct: 947 --SDPHIHFTVKR-LGDLLEAFIGCLLLDCGME 976


>gi|320093928|ref|ZP_08025763.1| ribonuclease III [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979140|gb|EFW10648.1| ribonuclease III [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 239

 Score = 82.8 bits (203), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/111 (40%), Positives = 65/111 (58%), Gaps = 1/111 (0%)

Query: 812 RKVATESN-ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
           R  A E+  I +NERLEFLGD+V+  + +  LFH +PD+ E  L+  RAA V    LA  
Sbjct: 38  RSYANEAGGIANNERLEFLGDSVLSVVIAERLFHDYPDVAESDLSRMRAATVSQAPLAAA 97

Query: 871 AKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           A+RIGL D++    G  L    +    +++ FEAL+GA +L  G+  A +V
Sbjct: 98  ARRIGLGDYVYLGKGESLHGGRDKDSILSDTFEALIGATYLTHGLQAARRV 148


>gi|171780118|ref|ZP_02921022.1| hypothetical protein STRINF_01906 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|379705722|ref|YP_005204181.1| Ribonuclease III [Streptococcus infantarius subsp. infantarius
           CJ18]
 gi|171281466|gb|EDT46901.1| ribonuclease III [Streptococcus infantarius subsp. infantarius ATCC
           BAA-102]
 gi|374682421|gb|AEZ62710.1| Ribonuclease III [Streptococcus infantarius subsp. infantarius
           CJ18]
          Length = 228

 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 4/132 (3%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDAV++ + S +LF  +P   EG L+  R+ IV+ + LA  ++  G ++
Sbjct: 39  NISHNERLEFLGDAVLQLLISQYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDE 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRF 934
           F+   +G +          + + FEA +GAL +D G++  ++  + V+     K N  R 
Sbjct: 99  FIKLGNGEEKSGGRNRDTILGDLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEKGNFERV 158

Query: 935 KQWMYYPQHPLQ 946
           K +    Q  LQ
Sbjct: 159 KDYKTTLQELLQ 170



 Score = 43.1 bits (100), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 6/58 (10%)

Query: 969  LEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            L+   G+ F    LL   FT  S  Y N    L +  N+RLEFLGD VLQL+ S YL+
Sbjct: 8    LQRDFGIAFEDKTLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISQYLF 63


>gi|54310187|ref|YP_131207.1| ribonuclease III [Photobacterium profundum SS9]
 gi|81615006|sp|Q6LMS2.1|RNC_PHOPR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|46914628|emb|CAG21405.1| putative ribonuclease III [Photobacterium profundum SS9]
          Length = 224

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 63/107 (58%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP ++EG ++  RA +V+ + LA L +   L 
Sbjct: 31  ANGKHNERLEFLGDSILSFVIADDLYHRFPHVDEGDMSRMRATLVRGKTLAELGREFELG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS 924
           D++L   G            +A+C EA++GA++LD   +   +V  S
Sbjct: 91  DYLLLGPGELKSGGFRRDSILADCVEAIIGAIYLDSDTEQVRKVILS 137


>gi|289705863|ref|ZP_06502243.1| ribonuclease III [Micrococcus luteus SK58]
 gi|289557406|gb|EFD50717.1| ribonuclease III [Micrococcus luteus SK58]
          Length = 244

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/92 (42%), Positives = 60/92 (65%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGD+V+ ++ + H+F V+PD+ EG LA  RAA+V  + LA +A+RIG+  F+  
Sbjct: 51  NERLEFLGDSVLGYVVTDHIFTVYPDLAEGDLARRRAAVVSTRALAKVARRIGIGPFVRL 110

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGG 914
             G       +    +A+  EAL+GA+++D G
Sbjct: 111 GTGERRTGGADKDSILADTLEALIGAVYVDHG 142


>gi|288905744|ref|YP_003430966.1| Ribonuclease III [Streptococcus gallolyticus UCN34]
 gi|306831841|ref|ZP_07464997.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325978776|ref|YP_004288492.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|386338195|ref|YP_006034364.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
           ATCC 43143]
 gi|288732470|emb|CBI14042.1| Ribonuclease III [Streptococcus gallolyticus UCN34]
 gi|304426039|gb|EFM29155.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325178704|emb|CBZ48748.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|334280831|dbj|BAK28405.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
           ATCC 43143]
          Length = 228

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 4/132 (3%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDAV++ + S +LF  +P   EG L+  R+ IV+ + LA  ++  G ++
Sbjct: 39  NISHNERLEFLGDAVLQLLISQYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDE 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRF 934
           F+   +G +          + + FEA +GAL +D G++  ++  + V+     K N  R 
Sbjct: 99  FIKLGNGEEKSGGRNRDTILGDLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEKGNFERV 158

Query: 935 KQWMYYPQHPLQ 946
           K +    Q  LQ
Sbjct: 159 KDYKTTLQELLQ 170



 Score = 44.7 bits (104), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 6/58 (10%)

Query: 969  LEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            L+   G++F    LL   FT  S  Y N    L +  N+RLEFLGD VLQL+ S YL+
Sbjct: 8    LQRDFGIVFEDKTLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISQYLF 63


>gi|239917409|ref|YP_002956967.1| RNAse III [Micrococcus luteus NCTC 2665]
 gi|239838616|gb|ACS30413.1| RNAse III [Micrococcus luteus NCTC 2665]
          Length = 220

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/92 (42%), Positives = 60/92 (65%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGD+V+ ++ + H+F V+PD+ EG LA  RAA+V  + LA +A+RIG+  F+  
Sbjct: 27  NERLEFLGDSVLGYVVTDHIFTVYPDLAEGDLARRRAAVVSTRALAKVARRIGIGPFVRL 86

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGG 914
             G       +    +A+  EAL+GA+++D G
Sbjct: 87  GTGERRTGGADKDSILADTLEALIGAVYVDHG 118


>gi|346313800|ref|ZP_08855327.1| ribonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
 gi|345907655|gb|EGX77365.1| ribonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
          Length = 227

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 66/104 (63%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEF+GDAV++  T+  LF + P++ EG + T RA +V  + LA   +++GL  +++ 
Sbjct: 41  NERLEFMGDAVLQLWTTKKLFLLEPELSEGQMTTLRAQLVCEEALAEYNRQLGLGKYLML 100

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
             G +     +    +A+ FEAL+GA+FLD G++  D + S+V+
Sbjct: 101 GVGEEKTGGRQRDSILADMFEALLGAVFLDQGMEAIDIILSAVV 144


>gi|229140493|ref|ZP_04269048.1| Ribonuclease 3 [Bacillus cereus BDRD-ST26]
 gi|228643054|gb|EEK99330.1| Ribonuclease 3 [Bacillus cereus BDRD-ST26]
          Length = 210

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAAIV    L   A  +     +L 
Sbjct: 22  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 81

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G++        ++Y K NE  F   M Y 
Sbjct: 82  GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYK 141

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 142 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 178


>gi|117924215|ref|YP_864832.1| ribonuclease III [Magnetococcus marinus MC-1]
 gi|189043326|sp|A0L633.1|RNC_MAGSM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|117607971|gb|ABK43426.1| RNAse III [Magnetococcus marinus MC-1]
          Length = 246

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/188 (32%), Positives = 85/188 (45%), Gaps = 47/188 (25%)

Query: 734 LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
           L  LE  + Y+F    LLQLALTH S                       P  G       
Sbjct: 10  LERLEQALDYRFTQSDLLQLALTHRS----------------------APLDG------- 40

Query: 794 NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
                         SK G  VAT    THNERLEFLGD+V+  I S  L+  F ++ EG 
Sbjct: 41  --------------SKAGEVVAT----THNERLEFLGDSVLNLIVSHRLYKRFGEVPEGQ 82

Query: 854 LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
           L+ +RA +V  + L+ +AK + L  ++    G       E    + N  EAL+GA++LDG
Sbjct: 83  LSQWRAMLVNTRSLSEVAKDLELGRYLRMGRGEAKSGGREKYSILGNALEALLGAIYLDG 142

Query: 914 GIDVADQV 921
           G + A++V
Sbjct: 143 GFEAAERV 150


>gi|417840890|ref|ZP_12486998.1| Ribonuclease 3 [Haemophilus haemolyticus M19501]
 gi|341950701|gb|EGT77288.1| Ribonuclease 3 [Haemophilus haemolyticus M19501]
          Length = 227

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 13/162 (8%)

Query: 797 KRGINTLINIMSKLGRKVATESNIT-HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLA 855
           +R I    N ++ L + +   S  T HNERLEFLGD+++ F  +  L+H FP   EG L+
Sbjct: 8   ERKIGYRFNDIALLKQALTHRSAATQHNERLEFLGDSILNFTIAEVLYHQFPRCNEGELS 67

Query: 856 TYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGI 915
             RA +V+   LA LA++  L D+ML   G         +  +A+C EA++GA+ LD G+
Sbjct: 68  RMRATLVREPTLAILARQFELGDYMLLGSGELKSGGFRRESILADCVEAIIGAMSLDQGL 127

Query: 916 DVADQV----FSSVLY--------KDNEVRFKQWMYYPQHPL 945
            V  QV    +  +L         KD + R ++++     PL
Sbjct: 128 AVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPL 169


>gi|119358263|ref|YP_912907.1| ribonuclease III [Chlorobium phaeobacteroides DSM 266]
 gi|119355612|gb|ABL66483.1| RNAse III [Chlorobium phaeobacteroides DSM 266]
          Length = 273

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 62/99 (62%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           +  N+RLEFLGDAV+  + S +LF  FPD  EG L++ RA IV  + LA  A+ IGL   
Sbjct: 78  VQSNQRLEFLGDAVLGLLISDYLFRNFPDSREGELSSNRAKIVNRKSLAGFARSIGLGKH 137

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
           ++    +D       + A+A+ FE+L+GA++LD G+D A
Sbjct: 138 LIIGESADKNKIRSSESALADAFESLIGAIYLDKGLDAA 176



 Score = 42.4 bits (98), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 4/59 (6%)

Query: 968  YLEYSSGVIFNHIRLLARVFTTRSM--GYTNLT--LGSNQRLEFLGDTVLQLITSDYLY 1022
            +LE  +G    ++ L     T RS+   Y + T  + SNQRLEFLGD VL L+ SDYL+
Sbjct: 43   FLETCAGSKGGNLFLYQTALTHRSVVHDYEHATPAVQSNQRLEFLGDAVLGLLISDYLF 101


>gi|85860141|ref|YP_462343.1| ribonuclease III [Syntrophus aciditrophicus SB]
 gi|85723232|gb|ABC78175.1| ribonuclease III [Syntrophus aciditrophicus SB]
          Length = 240

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/96 (45%), Positives = 55/96 (57%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S  L   FPD  EG L+  RA++V  Q LA LAK+  +  F+L 
Sbjct: 47  NERLEFLGDAVLELCISDLLMKAFPDYSEGQLSKLRASVVNEQPLAELAKKCRIGSFILL 106

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
             G +          +AN  EA+  A+FLDGG D A
Sbjct: 107 GKGEESSGGRSKPSILANTMEAITAAVFLDGGFDRA 142


>gi|240146505|ref|ZP_04745106.1| ribonuclease III [Roseburia intestinalis L1-82]
 gi|257201361|gb|EEU99645.1| ribonuclease III [Roseburia intestinalis L1-82]
 gi|291535139|emb|CBL08251.1| RNAse III [Roseburia intestinalis M50/1]
          Length = 228

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 70/240 (29%)

Query: 734 LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
           L  L++RI Y F+   LL+ ALTH SY      N  H +                     
Sbjct: 4   LQELQNRIGYTFEKEGLLRQALTHSSY-----ANEKHMKKH------------------- 39

Query: 794 NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
                                      + NERLEFLGDAV+E ++S  L+  +PD+ EG 
Sbjct: 40  ---------------------------SDNERLEFLGDAVLEIVSSDFLYRNYPDLPEGD 72

Query: 854 LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
           L   RA+IV    LA   + + L D++L   G +     + K  +++  E+++GA++LDG
Sbjct: 73  LTKLRASIVCEPTLALCTREMDLGDYLLLGKGENQTGGRKRKSILSDALESVIGAIYLDG 132

Query: 914 GIDVADQVFSSVLYKDNEVR-----------------FKQWMYYPQHPLQEQEPDGDRQW 956
           G + A +     +  D E +                 +K+ ++Y    + E+ PD D+Q+
Sbjct: 133 GFEPAKKFIHKFILTDIEHKKLFYDSKTILQEVVQGNYKESLHY--ELISEEGPDHDKQF 190



 Score = 40.4 bits (93), Expect = 5.1,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITS 1018
            + +LQ L+   G  F    LL +  T  S  Y N         N+RLEFLGD VL++++S
Sbjct: 1    MSKLQELQNRIGYTFEKEGLLRQALTHSS--YANEKHMKKHSDNERLEFLGDAVLEIVSS 58

Query: 1019 DYLY 1022
            D+LY
Sbjct: 59   DFLY 62


>gi|260771922|ref|ZP_05880840.1| ribonuclease III [Vibrio metschnikovii CIP 69.14]
 gi|260613214|gb|EEX38415.1| ribonuclease III [Vibrio metschnikovii CIP 69.14]
          Length = 204

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 73/140 (52%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+  FP I EG ++  RA +V+   LA L +  GL 
Sbjct: 10  ANGKHNERLEFLGDSILSFVIADELYRRFPKINEGDMSRMRATLVRGNTLAELGREFGLG 69

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSV 925
           D++    G            +A+  EA++GA++LD  I++A            D +   V
Sbjct: 70  DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEMARGIILNWYQPRLDAIKPGV 129

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 130 SQKDPKTRLQEFLQGKRSPL 149


>gi|94263438|ref|ZP_01287251.1| Ribonuclease III [delta proteobacterium MLMS-1]
 gi|93456168|gb|EAT06307.1| Ribonuclease III [delta proteobacterium MLMS-1]
          Length = 233

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 8/163 (4%)

Query: 812 RKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLA 871
           R       ++ NERLEFLGDAV+    +  L+   P + EG L+ +RAA+V  +HLA +A
Sbjct: 34  RAAEAGKGVSSNERLEFLGDAVLGLAVAALLYEAHPTMPEGDLSRHRAALVNEEHLAGMA 93

Query: 872 KRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
           +++ L +F+    G +     +    +A  FEAL+GA++LDGG + A  +   +      
Sbjct: 94  RQLALGEFIRLGRGEEATGGRDKPSILAATFEALVGAVYLDGGYEPALALLRPL------ 147

Query: 932 VRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSG 974
             F  W+  P  P         ++ ++Q      + YLE   G
Sbjct: 148 --FAPWVANPPLPRISDSKSALQEVLQQRHGEGPVYYLENEEG 188


>gi|440793952|gb|ELR15123.1| RNase3 domain containing protein [Acanthamoeba castellanii str. Neff]
          Length = 928

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 105/258 (40%), Gaps = 57/258 (22%)

Query: 815  ATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI 874
            A E + THNERLEFLGD V+EF+    +F   P + EG L   +    +N  LA  A+ +
Sbjct: 485  AREVDTTHNERLEFLGDGVLEFLAVTRVFLRHPTLTEGELTEKKKRYTRNAVLALAAQEL 544

Query: 875  GLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRF 934
            GL + +L   G  + +        A+  EA++ ALFLD GID A++   +VL+  ++   
Sbjct: 545  GLPECLLVT-GHPMSNPQGAAKVSADLLEAVIAALFLDQGIDQANRFCEAVLFDRHQGGT 603

Query: 935  KQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQ-----------------LQYLEYSSGVIF 977
                    H   E  P        +SPL  +                 +  LE + G  F
Sbjct: 604  DGEGGDDDHARAESRP------FVRSPLYAKPTDPALGTDISAREAADVAGLESALGFAF 657

Query: 978  NHIRLLARVFTTRSMGYTN---------------------------------LTLGSNQR 1004
                 L +  T +S   +                                  +  GS +R
Sbjct: 658  GDKGYLQQAVTHKSFAGSGSKGDGGNIEEKGKEKEKSTDDPEVQGREGAPRYVAEGSYER 717

Query: 1005 LEFLGDTVLQLITSDYLY 1022
            LEFLGD +L+ ITS +LY
Sbjct: 718  LEFLGDCLLKFITSVHLY 735



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 57/93 (61%), Gaps = 4/93 (4%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFP-DIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           ERLEFLGD +++FITS+HL+   P D+ E  L   R+ +V+N  LA    R GL+ F+L+
Sbjct: 716 ERLEFLGDCLLKFITSVHLYFTAPTDVREDTLTDRRSMLVRNTWLAQCTARRGLDAFLLH 775

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGI 915
              S    E ++   + +  E+L+GA +LD G+
Sbjct: 776 GLPSSPGPEDKV---LGDLLESLIGAAYLDRGM 805


>gi|406978407|gb|EKE00379.1| Ribonuclease III [uncultured bacterium]
          Length = 230

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 12/128 (9%)

Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
           + NERLEFLGDAV++ ++S  L+  FP+  EG L  +RAA V    LA  AKR+     +
Sbjct: 43  SSNERLEFLGDAVLQLLSSEFLYKKFPNHPEGDLTNFRAATVCTGSLAKEAKRLEYGRLL 102

Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDV------------ADQVFSSVLYK 928
           L ++G +     + ++ +AN FEA++GALF++ GID              +++  S  YK
Sbjct: 103 LLSNGEEATGGRQREYILANTFEAVLGALFIEKGIDFCREFLERELLYKVEEIVKSEGYK 162

Query: 929 DNEVRFKQ 936
           D++ +F++
Sbjct: 163 DSKSKFQE 170



 Score = 43.9 bits (102), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 3/38 (7%)

Query: 985  RVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            R F    + YTN    SN+RLEFLGD VLQL++S++LY
Sbjct: 31   RSFLNEHLDYTN---SSNERLEFLGDAVLQLLSSEFLY 65


>gi|330446941|ref|ZP_08310592.1| ribonuclease III [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491132|dbj|GAA05089.1| ribonuclease III [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 224

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 62/104 (59%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP ++EG ++  RA +V+ + LA L +   L 
Sbjct: 31  ANGNHNERLEFLGDSILSFVVADDLYHRFPSVDEGDMSRMRATLVRGKTLAELGREFELG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           D +L   G            +A+C EA++GA++LD  I+   ++
Sbjct: 91  DHLLLGPGELKSGGFRRDSILADCVEAIIGAIYLDSDIEKVREI 134


>gi|424780882|ref|ZP_18207749.1| Ribonuclease III [Catellicoccus marimammalium M35/04/3]
 gi|422842583|gb|EKU27034.1| Ribonuclease III [Catellicoccus marimammalium M35/04/3]
          Length = 231

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/111 (35%), Positives = 65/111 (58%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           E  +  NERLE+LGDAV+E + S +LF  +P++ EG L  +RAAIV+   LA+ AK +  
Sbjct: 37  EEQLPCNERLEYLGDAVLELLVSTYLFKEYPELPEGKLTRFRAAIVKEDSLAYFAKEVHF 96

Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           ++ +    G +  +  +    + + FEA +GAL+LD G++        V++
Sbjct: 97  DEHIFLGKGEEKANGRQRPALLCDLFEAFLGALYLDQGLEKVQAFLDQVMF 147


>gi|219848618|ref|YP_002463051.1| Ribonuclease III [Chloroflexus aggregans DSM 9485]
 gi|254807244|sp|B8GAM6.1|RNC_CHLAD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|219542877|gb|ACL24615.1| Ribonuclease III [Chloroflexus aggregans DSM 9485]
          Length = 229

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 16/156 (10%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           SN++ NERLEFLGD+V+ F+T+  LF  FP   E  L ++RAA+V  + LA  A  + L 
Sbjct: 40  SNLSDNERLEFLGDSVLHFVTTTWLFQQFPHQNESTLTSWRAALVSTKGLAECAATLNLG 99

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK--------- 928
            +   + G D     +    +A+ FEA++GA++LD G++ A       L++         
Sbjct: 100 QYAFLSRGEDTPKGRQRSKLLADLFEAVIGAIYLDQGLEAARAFIEPFLHERIGTLQTAV 159

Query: 929 -DNEVRFKQWMY--YPQHP----LQEQEPDGDRQWV 957
            D   R ++ +   + Q P    + E+ PD  R++V
Sbjct: 160 LDPTTRLQEIVQSRHKQLPKYYLIDERGPDHQREYV 195



 Score = 40.4 bits (93), Expect = 5.6,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 962  LLKQLQYLEYSSGVIFNHIRLLARVFTTRSM----GYTNLTLGSNQRLEFLGDTVLQLIT 1017
            ++++L  LE + G+ F   +LL      RS+     +    L  N+RLEFLGD+VL  +T
Sbjct: 1    MVERLAELERALGITFRDRKLLQTALMHRSLFNEQPHLLSNLSDNERLEFLGDSVLHFVT 60

Query: 1018 SDYLY 1022
            + +L+
Sbjct: 61   TTWLF 65


>gi|406669308|ref|ZP_11076587.1| ribonuclease III [Facklamia ignava CCUG 37419]
 gi|405583821|gb|EKB57752.1| ribonuclease III [Facklamia ignava CCUG 37419]
          Length = 228

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/133 (36%), Positives = 75/133 (56%), Gaps = 4/133 (3%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           +  NERLEFLGDAV+E I S  L+  +P++ EG L+  RA +V+   LA LA+++ L D+
Sbjct: 40  LASNERLEFLGDAVLEIIVSEFLYQQYPNLAEGELSRMRAQLVREPSLARLARQLNLPDY 99

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDN----EVRFK 935
           +    G      +E    +++  EAL+GAL+LD G++V        L KD+    ++  K
Sbjct: 100 LKLGRGELKSGGLERDSILSDALEALLGALYLDQGLEVVRDFLYRELLKDHVNWLKLINK 159

Query: 936 QWMYYPQHPLQEQ 948
            +    Q  LQ+Q
Sbjct: 160 DYKTLLQERLQQQ 172


>gi|333985409|ref|YP_004514619.1| ribonuclease 3 [Methylomonas methanica MC09]
 gi|333809450|gb|AEG02120.1| Ribonuclease 3 [Methylomonas methanica MC09]
          Length = 226

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 71/131 (54%), Gaps = 1/131 (0%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +   +NERLE+LGD+V+ F+ +  L+  FP + EG L+  RA++V    LA LA++  L 
Sbjct: 31  AGANNNERLEYLGDSVLGFVVAERLYSQFPGVGEGVLSRLRASLVNQTSLAELARQHNLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ-VFSSVLYKDNEVRFKQ 936
           D+++   G            +++  EA+MGAL LD G+D+    + +    K  E++   
Sbjct: 91  DYLILGSGELKSGGFRRDSILSDALEAIMGALLLDSGVDICRHWILNLFAEKFAEIKLDT 150

Query: 937 WMYYPQHPLQE 947
           W   P+  LQE
Sbjct: 151 WNKDPKTRLQE 161



 Score = 40.8 bits (94), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 962  LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 1021
            ++K+ + L    G+ FN  +L     T RS G  N     N+RLE+LGD+VL  + ++ L
Sbjct: 1    MIKKPEELARKLGLTFNQPQLFKTALTHRSAGANN-----NERLEYLGDSVLGFVVAERL 55

Query: 1022 Y 1022
            Y
Sbjct: 56   Y 56


>gi|320108696|ref|YP_004184286.1| ribonuclease III [Terriglobus saanensis SP1PR4]
 gi|319927217|gb|ADV84292.1| ribonuclease III [Terriglobus saanensis SP1PR4]
          Length = 252

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 80/185 (43%), Gaps = 52/185 (28%)

Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
           L +R+ YKF++  LL LALTH S     GT                              
Sbjct: 9   LAERLGYKFRDAKLLDLALTHSSLAFEAGT------------------------------ 38

Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
                             A+ESN    ER+EF+GDAVV  I +  LF  FP + EG L  
Sbjct: 39  ------------------ASESN----ERMEFVGDAVVGLIVAESLFQRFPSLGEGELTR 76

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            RA +V  +HL  +  R+GL +++    G +     +    MAN  EA++ A++LDGG+ 
Sbjct: 77  MRALLVSRKHLGEVGARLGLGEYLQLGRGEEQSGGRKKPALMANAMEAVLAAVYLDGGLS 136

Query: 917 VADQV 921
              ++
Sbjct: 137 AVQEI 141


>gi|75762036|ref|ZP_00741948.1| Ribonuclease III [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74490482|gb|EAO53786.1| Ribonuclease III [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 262

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 75/157 (47%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAAIV    L   A  +     +L 
Sbjct: 74  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 133

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G++   +    ++Y K NE  F   M Y 
Sbjct: 134 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWEFLKEIVYPKINEGAFSHVMDYK 193

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 194 SQLQELIQRDGSGNVEYQILQEKGPAHNREFVSRVTL 230


>gi|312793340|ref|YP_004026263.1| ribonuclease iii [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180480|gb|ADQ40650.1| ribonuclease III [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 222

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/117 (35%), Positives = 71/117 (60%)

Query: 810 LGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAH 869
           L  K AT SN    ER EFLGDA +E   S +LF  FP++ EG L   RAA+V +Q L+ 
Sbjct: 22  LTHKSATHSNKNCYERFEFLGDAALELAVSKYLFVHFPELSEGELTNIRAAVVCSQTLSK 81

Query: 870 LAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           +A+++ L++ +++     +    E K  +A+  EA+ GA+F++ G D+ +++  ++L
Sbjct: 82  VAEKLNLKNHIIFGKREKMEKFHENKSILADVLEAIFGAIFIESGFDIVEKIIVNLL 138


>gi|150390513|ref|YP_001320562.1| ribonuclease III [Alkaliphilus metalliredigens QYMF]
 gi|149950375|gb|ABR48903.1| Ribonuclease III [Alkaliphilus metalliredigens QYMF]
          Length = 239

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 56/220 (25%)

Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
            E+ IQY+F+++ LL+ ALTH SY                                    
Sbjct: 14  FEEMIQYQFKDKQLLKEALTHSSYANE--------------------------------- 40

Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
                      SK+ +       I HNERLEFLGD+V+  I S ++F  +  + EG L  
Sbjct: 41  -----------SKVKK-------IKHNERLEFLGDSVLGIIISDYIFKKYTHLPEGDLTK 82

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            RA +V    L   A +I L  F+    G ++    + +  +A+ FEAL+GAL+LDGG+ 
Sbjct: 83  VRANVVCEPALGSCATKINLGGFLRLGRGEEVSGGRQRESILADAFEALIGALYLDGGMV 142

Query: 917 VA-----DQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPD 951
           +A     + +  SV        F+ +  Y Q  LQ +  +
Sbjct: 143 IAQTFVLNHLIDSVEQATKGSLFRDYKTYLQELLQSKHSE 182


>gi|384082329|ref|ZP_09993504.1| ribonuclease III [gamma proteobacterium HIMB30]
          Length = 226

 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 12/130 (9%)

Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
           +HNERLEFLGD++V F+ +  LF  +P+  EG L   RA++V+ Q L+ LA+R+ L + +
Sbjct: 35  SHNERLEFLGDSIVNFVVAEALFRRYPEAREGKLTRMRASLVRGQSLSQLARRLQLGETI 94

Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY------------K 928
               G            +A+  EA++GA+FLDGG+        + L             K
Sbjct: 95  RLGSGERKSGGRRRDSILADAMEAVIGAVFLDGGMAACQSCIITWLESELAAVNPNQVDK 154

Query: 929 DNEVRFKQWM 938
           D +   ++WM
Sbjct: 155 DPKTALQEWM 164


>gi|418027978|ref|ZP_12666572.1| Ribonuclease III [Streptococcus thermophilus CNCM I-1630]
 gi|354688972|gb|EHE88990.1| Ribonuclease III [Streptococcus thermophilus CNCM I-1630]
          Length = 176

 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 64/108 (59%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDA ++ + S++L++ +P+  EG ++  R+ IV+ + LA   K  G E 
Sbjct: 39  NISHNERLEFLGDAALQLVISVYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQ 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           ++    G +     E    + + +EA +GAL+LD G    ++  + V+
Sbjct: 99  YIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGFPAVEKFLNQVM 146



 Score = 47.0 bits (110), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 6/60 (10%)

Query: 967  QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            Q LE   G++F+   LL   FT  S  Y N    L +  N+RLEFLGD  LQL+ S YLY
Sbjct: 6    QKLEQDFGIVFSQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAALQLVISVYLY 63


>gi|291539668|emb|CBL12779.1| RNAse III [Roseburia intestinalis XB6B4]
          Length = 228

 Score = 82.0 bits (201), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 70/240 (29%)

Query: 734 LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
           L  L++RI Y F+   LL+ ALTH SY      N  H +                     
Sbjct: 4   LQELQNRIGYTFEKEGLLRQALTHSSY-----ANEKHMKKH------------------- 39

Query: 794 NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
                                      + NERLEFLGDAV+E ++S  L+  +PD+ EG 
Sbjct: 40  ---------------------------SDNERLEFLGDAVLEIVSSDFLYRNYPDLPEGD 72

Query: 854 LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
           L   RA+IV    LA   + + L D++L   G +     + K  +++  E+++GA++LDG
Sbjct: 73  LTKLRASIVCEPTLALCTREMDLGDYLLLGKGENQTGGRKRKSILSDALESVIGAIYLDG 132

Query: 914 GIDVADQVFSSVLYKDNEVR-----------------FKQWMYYPQHPLQEQEPDGDRQW 956
           G + A +     +  D E +                 +K+ ++Y    + E+ PD D+Q+
Sbjct: 133 GFEPAKKFIHKFILTDIEHKKLFYDSKTILQEVVQGNYKESLHY--ELISEEGPDHDKQF 190



 Score = 40.4 bits (93), Expect = 5.6,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITS 1018
            + +LQ L+   G  F    LL +  T  S  Y N         N+RLEFLGD VL++++S
Sbjct: 1    MSKLQELQNRIGYTFEKEGLLRQALTHSS--YANEKHMKKHSDNERLEFLGDAVLEIVSS 58

Query: 1019 DYLY 1022
            D+LY
Sbjct: 59   DFLY 62


>gi|384085608|ref|ZP_09996783.1| ribonuclease 3 [Acidithiobacillus thiooxidans ATCC 19377]
          Length = 226

 Score = 82.0 bits (201), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/105 (39%), Positives = 59/105 (56%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDA + F+ +  LF  FP + EG L+  RA +V+ + LA +A  I L D+++
Sbjct: 34  HNERLEFLGDAALNFVVAARLFGRFPKVSEGDLSRMRARLVREETLAEIAGEIALADYLI 93

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
              G             A+  EA++GA FLDGG   A+ +   +L
Sbjct: 94  LGPGEVRSGGARRDSIRADALEAVIGAAFLDGGFSAAEGIVLKLL 138


>gi|218440872|ref|YP_002379201.1| ribonuclease III [Cyanothece sp. PCC 7424]
 gi|218173600|gb|ACK72333.1| Ribonuclease III [Cyanothece sp. PCC 7424]
          Length = 228

 Score = 82.0 bits (201), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 25/163 (15%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDAV+ F+    L+  +P + E  L+  RA +V    LA  A ++G+   M 
Sbjct: 32  HNERLEFLGDAVLAFVAGEFLYQRYPHLSEAQLSRLRARLVDETQLAKFAVQLGIGQLMR 91

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGID------------VAD-------QVF 922
              G+      E    +++ FEA++GA FLD GID            VAD       ++ 
Sbjct: 92  LGKGAIKDGGRENPALLSDTFEAIIGAYFLDAGIDAVREFVRPLFQSVADILMVAQSEIL 151

Query: 923 SSVLYKDNEVRFKQWMY--YPQHP----LQEQEPDGDRQWVEQ 959
           +S    D + RF+QW    + Q+P    ++E  PD  +++  Q
Sbjct: 152 TSEKLLDPKNRFQQWTLANFTQNPEYVIIEESGPDHAKEFTAQ 194


>gi|166031773|ref|ZP_02234602.1| hypothetical protein DORFOR_01474 [Dorea formicigenerans ATCC
           27755]
 gi|166028226|gb|EDR46983.1| ribonuclease III [Dorea formicigenerans ATCC 27755]
          Length = 233

 Score = 82.0 bits (201), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 103/246 (41%), Gaps = 70/246 (28%)

Query: 728 LRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGD 787
           +   R+L  LE RI Y FQ+  LL+ A++H SY      N +H            P+Y  
Sbjct: 1   MNMKRNLKELEHRIGYTFQDFALLKKAMSHSSY-----VNEEHL-----------PKY-- 42

Query: 788 RRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFP 847
                                              NERLEFLGDAV+E ++S  LF   P
Sbjct: 43  ---------------------------------ECNERLEFLGDAVLELVSSEFLFFEHP 69

Query: 848 DIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMG 907
              EG L   RA++V    LA  A+ I L +++L   G D     + +   ++  EAL+G
Sbjct: 70  TTPEGELTKTRASMVCEPALAFCAREIELGEYLLLGKGEDATGGRKRESVTSDAMEALIG 129

Query: 908 ALFLDGGIDVADQVFSSVLYKDNE-----------------VRFKQWMYYPQHPLQEQEP 950
           A+++DGG   A +  +  + KD E                   FK+ + Y  H + E+ P
Sbjct: 130 AIYVDGGFANAKEFINRFILKDLENKKLFYDSKTILQEIVQAHFKEELSY--HLVGEEGP 187

Query: 951 DGDRQW 956
           D D+ +
Sbjct: 188 DHDKTF 193


>gi|27364934|ref|NP_760462.1| ribonuclease III [Vibrio vulnificus CMCP6]
 gi|31076872|sp|Q8DC76.1|RNC_VIBVU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|27361080|gb|AAO09989.1| ribonuclease III [Vibrio vulnificus CMCP6]
          Length = 225

 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +  GL 
Sbjct: 31  ANSKHNERLEFLGDSILSFVIADELYHRFPKVNEGDMSRMRATLVRGNTLAELGREFGLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSV 925
           D++    G            +A+  EA++GA++LD  ++V             + +   V
Sbjct: 91  DYLKLGPGELKSGGFRRDSILADAVEAIIGAVYLDSDLEVVRGIVLNWYTSRLEAIKPGV 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|399526667|ref|ZP_10766423.1| ribonuclease III [Actinomyces sp. ICM39]
 gi|398362776|gb|EJN46449.1| ribonuclease III [Actinomyces sp. ICM39]
          Length = 240

 Score = 82.0 bits (201), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 1/111 (0%)

Query: 812 RKVATESN-ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
           R  A E+  I +NERLEFLGD+V+  + +  L+  +PD+ E  L+  RAA V  Q LA  
Sbjct: 38  RSYANEAGGIANNERLEFLGDSVLSIVIAEKLYEQYPDVAESDLSRMRAATVSQQPLAAA 97

Query: 871 AKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           A+RIGL DF+    G  +    +    +++ FEAL+GA +L  G++ A +V
Sbjct: 98  ARRIGLGDFVFLGKGESMHGGRDKDSILSDTFEALIGATYLTSGLEEARRV 148


>gi|160946001|ref|ZP_02093227.1| hypothetical protein FAEPRAM212_03534 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443732|gb|EDP20737.1| ribonuclease III [Faecalibacterium prausnitzii M21/2]
 gi|295103252|emb|CBL00796.1| RNAse III [Faecalibacterium prausnitzii SL3/3]
          Length = 224

 Score = 82.0 bits (201), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/182 (30%), Positives = 84/182 (46%), Gaps = 52/182 (28%)

Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
           LE  I YKF+N  LL++ALTH S          +A  S      R P             
Sbjct: 5   LETIIGYKFKNPELLEIALTHTS----------YANES------RTP------------- 35

Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
                                  + HNERLEFLGD+V++ +++ +LFH + D  EG L  
Sbjct: 36  -----------------------VKHNERLEFLGDSVLQIVSADYLFHAYADRPEGDLTR 72

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            RA++V    L   A+ I L +++    G + C        +++ FEA++ AL+LDGG++
Sbjct: 73  IRASLVSESALFQFAQEIDLGEYLRLGRGEERCGGRTRPSVVSDAFEAVIAALYLDGGME 132

Query: 917 VA 918
           VA
Sbjct: 133 VA 134


>gi|30021937|ref|NP_833568.1| ribonuclease III [Bacillus cereus ATCC 14579]
 gi|206971258|ref|ZP_03232209.1| ribonuclease III [Bacillus cereus AH1134]
 gi|218232410|ref|YP_002368650.1| ribonuclease III [Bacillus cereus B4264]
 gi|218899002|ref|YP_002447413.1| ribonuclease III [Bacillus cereus G9842]
 gi|228902352|ref|ZP_04066509.1| Ribonuclease 3 [Bacillus thuringiensis IBL 4222]
 gi|228909674|ref|ZP_04073497.1| Ribonuclease 3 [Bacillus thuringiensis IBL 200]
 gi|228922603|ref|ZP_04085903.1| Ribonuclease 3 [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228954126|ref|ZP_04116154.1| Ribonuclease 3 [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228960065|ref|ZP_04121729.1| Ribonuclease 3 [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228973866|ref|ZP_04134442.1| Ribonuclease 3 [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228980456|ref|ZP_04140766.1| Ribonuclease 3 [Bacillus thuringiensis Bt407]
 gi|229047536|ref|ZP_04193126.1| Ribonuclease 3 [Bacillus cereus AH676]
 gi|229071347|ref|ZP_04204570.1| Ribonuclease 3 [Bacillus cereus F65185]
 gi|229081104|ref|ZP_04213614.1| Ribonuclease 3 [Bacillus cereus Rock4-2]
 gi|229111320|ref|ZP_04240873.1| Ribonuclease 3 [Bacillus cereus Rock1-15]
 gi|229129125|ref|ZP_04258098.1| Ribonuclease 3 [Bacillus cereus BDRD-Cer4]
 gi|229146420|ref|ZP_04274791.1| Ribonuclease 3 [Bacillus cereus BDRD-ST24]
 gi|229152048|ref|ZP_04280243.1| Ribonuclease 3 [Bacillus cereus m1550]
 gi|229180125|ref|ZP_04307469.1| Ribonuclease 3 [Bacillus cereus 172560W]
 gi|229192018|ref|ZP_04318988.1| Ribonuclease 3 [Bacillus cereus ATCC 10876]
 gi|296504344|ref|YP_003666044.1| ribonuclease III [Bacillus thuringiensis BMB171]
 gi|384187909|ref|YP_005573805.1| ribonuclease III [Bacillus thuringiensis serovar chinensis CT-43]
 gi|402558825|ref|YP_006601549.1| ribonuclease III [Bacillus thuringiensis HD-771]
 gi|410676223|ref|YP_006928594.1| ribonuclease 3 [Bacillus thuringiensis Bt407]
 gi|423359115|ref|ZP_17336618.1| ribonuclease 3 [Bacillus cereus VD022]
 gi|423385352|ref|ZP_17362608.1| ribonuclease 3 [Bacillus cereus BAG1X1-2]
 gi|423412346|ref|ZP_17389466.1| ribonuclease 3 [Bacillus cereus BAG3O-2]
 gi|423425985|ref|ZP_17403016.1| ribonuclease 3 [Bacillus cereus BAG3X2-2]
 gi|423431869|ref|ZP_17408873.1| ribonuclease 3 [Bacillus cereus BAG4O-1]
 gi|423437304|ref|ZP_17414285.1| ribonuclease 3 [Bacillus cereus BAG4X12-1]
 gi|423503473|ref|ZP_17480065.1| ribonuclease 3 [Bacillus cereus HD73]
 gi|423528290|ref|ZP_17504735.1| ribonuclease 3 [Bacillus cereus HuB1-1]
 gi|423561745|ref|ZP_17538021.1| ribonuclease 3 [Bacillus cereus MSX-A1]
 gi|423582059|ref|ZP_17558170.1| ribonuclease 3 [Bacillus cereus VD014]
 gi|423585742|ref|ZP_17561829.1| ribonuclease 3 [Bacillus cereus VD045]
 gi|423628942|ref|ZP_17604691.1| ribonuclease 3 [Bacillus cereus VD154]
 gi|423635380|ref|ZP_17611033.1| ribonuclease 3 [Bacillus cereus VD156]
 gi|423641070|ref|ZP_17616688.1| ribonuclease 3 [Bacillus cereus VD166]
 gi|423649712|ref|ZP_17625282.1| ribonuclease 3 [Bacillus cereus VD169]
 gi|423656708|ref|ZP_17632007.1| ribonuclease 3 [Bacillus cereus VD200]
 gi|434376952|ref|YP_006611596.1| ribonuclease III [Bacillus thuringiensis HD-789]
 gi|449090792|ref|YP_007423233.1| ribonuclease III [Bacillus thuringiensis serovar kurstaki str.
           HD73]
 gi|452200288|ref|YP_007480369.1| Ribonuclease III [Bacillus thuringiensis serovar thuringiensis str.
           IS5056]
 gi|38372411|sp|Q819V8.1|RNC_BACCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735367|sp|B7IUK8.1|RNC_BACC2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735368|sp|B7HDX2.1|RNC_BACC4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|29897493|gb|AAP10769.1| Ribonuclease III [Bacillus cereus ATCC 14579]
 gi|206734030|gb|EDZ51201.1| ribonuclease III [Bacillus cereus AH1134]
 gi|218160367|gb|ACK60359.1| ribonuclease III [Bacillus cereus B4264]
 gi|218544165|gb|ACK96559.1| ribonuclease III [Bacillus cereus G9842]
 gi|228591569|gb|EEK49418.1| Ribonuclease 3 [Bacillus cereus ATCC 10876]
 gi|228603334|gb|EEK60811.1| Ribonuclease 3 [Bacillus cereus 172560W]
 gi|228631397|gb|EEK88031.1| Ribonuclease 3 [Bacillus cereus m1550]
 gi|228637053|gb|EEK93512.1| Ribonuclease 3 [Bacillus cereus BDRD-ST24]
 gi|228654362|gb|EEL10227.1| Ribonuclease 3 [Bacillus cereus BDRD-Cer4]
 gi|228672096|gb|EEL27387.1| Ribonuclease 3 [Bacillus cereus Rock1-15]
 gi|228702148|gb|EEL54624.1| Ribonuclease 3 [Bacillus cereus Rock4-2]
 gi|228711801|gb|EEL63753.1| Ribonuclease 3 [Bacillus cereus F65185]
 gi|228723783|gb|EEL75138.1| Ribonuclease 3 [Bacillus cereus AH676]
 gi|228779276|gb|EEM27533.1| Ribonuclease 3 [Bacillus thuringiensis Bt407]
 gi|228785891|gb|EEM33894.1| Ribonuclease 3 [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228799581|gb|EEM46534.1| Ribonuclease 3 [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228805446|gb|EEM52037.1| Ribonuclease 3 [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228837032|gb|EEM82373.1| Ribonuclease 3 [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228849963|gb|EEM94794.1| Ribonuclease 3 [Bacillus thuringiensis IBL 200]
 gi|228857321|gb|EEN01824.1| Ribonuclease 3 [Bacillus thuringiensis IBL 4222]
 gi|296325396|gb|ADH08324.1| ribonuclease III [Bacillus thuringiensis BMB171]
 gi|326941618|gb|AEA17514.1| ribonuclease III [Bacillus thuringiensis serovar chinensis CT-43]
 gi|401084987|gb|EJP93233.1| ribonuclease 3 [Bacillus cereus VD022]
 gi|401104414|gb|EJQ12391.1| ribonuclease 3 [Bacillus cereus BAG3O-2]
 gi|401110732|gb|EJQ18631.1| ribonuclease 3 [Bacillus cereus BAG3X2-2]
 gi|401116625|gb|EJQ24463.1| ribonuclease 3 [Bacillus cereus BAG4O-1]
 gi|401120459|gb|EJQ28255.1| ribonuclease 3 [Bacillus cereus BAG4X12-1]
 gi|401202002|gb|EJR08867.1| ribonuclease 3 [Bacillus cereus MSX-A1]
 gi|401212938|gb|EJR19679.1| ribonuclease 3 [Bacillus cereus VD014]
 gi|401233088|gb|EJR39584.1| ribonuclease 3 [Bacillus cereus VD045]
 gi|401268487|gb|EJR74535.1| ribonuclease 3 [Bacillus cereus VD154]
 gi|401278131|gb|EJR84067.1| ribonuclease 3 [Bacillus cereus VD156]
 gi|401280131|gb|EJR86053.1| ribonuclease 3 [Bacillus cereus VD166]
 gi|401282992|gb|EJR88889.1| ribonuclease 3 [Bacillus cereus VD169]
 gi|401290449|gb|EJR96143.1| ribonuclease 3 [Bacillus cereus VD200]
 gi|401635408|gb|EJS53163.1| ribonuclease 3 [Bacillus cereus BAG1X1-2]
 gi|401787477|gb|AFQ13516.1| ribonuclease III [Bacillus thuringiensis HD-771]
 gi|401875509|gb|AFQ27676.1| ribonuclease III [Bacillus thuringiensis HD-789]
 gi|402451953|gb|EJV83772.1| ribonuclease 3 [Bacillus cereus HuB1-1]
 gi|402459694|gb|EJV91431.1| ribonuclease 3 [Bacillus cereus HD73]
 gi|409175352|gb|AFV19657.1| ribonuclease 3 [Bacillus thuringiensis Bt407]
 gi|449024549|gb|AGE79712.1| ribonuclease III [Bacillus thuringiensis serovar kurstaki str.
           HD73]
 gi|452105681|gb|AGG02621.1| Ribonuclease III [Bacillus thuringiensis serovar thuringiensis str.
           IS5056]
          Length = 245

 Score = 82.0 bits (201), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 75/157 (47%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAAIV    L   A  +     +L 
Sbjct: 57  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 116

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G++   +    ++Y K NE  F   M Y 
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWEFLKEIVYPKINEGAFSHVMDYK 176

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 177 SQLQELIQRDGSGNVEYQILQEKGPAHNREFVSRVTL 213


>gi|418309743|ref|ZP_12921294.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21331]
 gi|365237866|gb|EHM78705.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21331]
          Length = 243

 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 61/108 (56%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   S +LF   P++ EG L   RA IV    L   A +IGL + 
Sbjct: 52  LDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEM 111

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          +++ FEA +GAL+LD G+D+  +    V++
Sbjct: 112 ILLGKGEEKTGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIF 159


>gi|292490849|ref|YP_003526288.1| ribonuclease III [Nitrosococcus halophilus Nc4]
 gi|291579444|gb|ADE13901.1| ribonuclease III [Nitrosococcus halophilus Nc4]
          Length = 231

 Score = 82.0 bits (201), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 78/138 (56%), Gaps = 12/138 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ F+ +  L+  FP  +EG L+  RA +V+ + LA LA+ + + D ++
Sbjct: 35  NNERLEFLGDSILNFLIAEFLYIRFPKAQEGKLSRLRATLVKGETLAELARELEIGDHLI 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS------------VLYKD 929
              G            +A+ FEA++GA++LDGG++   ++ +S            VL KD
Sbjct: 95  LGPGELKSGGYRRTSILADAFEAVIGAVYLDGGLEACRKLVASLYEDRLEALTSEVLLKD 154

Query: 930 NEVRFKQWMYYPQHPLQE 947
            + R ++++   Q PL +
Sbjct: 155 PKTRLQEYLQARQLPLPD 172


>gi|406971313|gb|EKD95427.1| hypothetical protein ACD_24C00490G0001, partial [uncultured
           bacterium]
          Length = 142

 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 63/94 (67%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV++ ++S  L++ FP+  EG L  YRA+IV    LA  ++R+   +F+L 
Sbjct: 43  NERLEFLGDAVLQLLSSEFLYNKFPESPEGDLTNYRASIVCTPSLAEESRRLNYGEFLLL 102

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
           ++G +       ++ +AN FEA++GAL++  G+D
Sbjct: 103 SNGEEATGGRNREYILANTFEAVLGALYMQNGLD 136


>gi|198283249|ref|YP_002219570.1| Ribonuclease III [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665431|ref|YP_002425832.1| ribonuclease III [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247770|gb|ACH83363.1| Ribonuclease III [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517644|gb|ACK78230.1| ribonuclease III [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 226

 Score = 82.0 bits (201), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/105 (38%), Positives = 61/105 (58%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDA + F+ +  LF  FP + EG L+  RA +V+ + LA +A +I L D ++
Sbjct: 34  HNERLEFLGDAALNFVVAAKLFARFPKVSEGDLSRMRARLVREETLAEIAGKIALADSLI 93

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
              G             A+  EA++GA FLDGG   A+++ + ++
Sbjct: 94  LGPGEIRSGGARRDSIRADALEAVIGAAFLDGGFGAAERIVAQLV 138


>gi|320155320|ref|YP_004187699.1| ribonuclease III [Vibrio vulnificus MO6-24/O]
 gi|56749444|sp|Q7MHN8.2|RNC_VIBVY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|319930632|gb|ADV85496.1| ribonuclease III [Vibrio vulnificus MO6-24/O]
          Length = 225

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +  GL 
Sbjct: 31  ANSKHNERLEFLGDSILSFVIADELYHRFPKVNEGDMSRMRATLVRGNTLAELGREFGLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSV 925
           D++    G            +A+  EA++GA++LD  ++V             + +   V
Sbjct: 91  DYLKLGPGELKSGGFRRDSILADAVEAIIGAVYLDSDLEVVRGIVLNWYASRLEAIKPGV 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|374338458|ref|YP_005095172.1| ribonuclease III [Streptococcus macedonicus ACA-DC 198]
 gi|372284572|emb|CCF02857.1| Ribonuclease III [Streptococcus macedonicus ACA-DC 198]
          Length = 228

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/132 (34%), Positives = 72/132 (54%), Gaps = 4/132 (3%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDAV++ + S +LF  +P   EG L+  R+ IV+ + LA  ++  G ++
Sbjct: 39  NISHNERLEFLGDAVLQLLISQYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDE 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRF 934
           F+   +G +          + + FEA +GAL +D G++   +  + V+     K N  R 
Sbjct: 99  FIKLGNGEEKSGGRNRDTILGDLFEAFLGALLMDQGVEAVKKFLNQVMIPQVEKGNFERV 158

Query: 935 KQWMYYPQHPLQ 946
           K +    Q  LQ
Sbjct: 159 KDYKTTLQELLQ 170



 Score = 44.7 bits (104), Expect = 0.27,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 6/58 (10%)

Query: 969  LEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            L+   G++F    LL   FT  S  Y N    L +  N+RLEFLGD VLQL+ S YL+
Sbjct: 8    LQRDFGIVFEDKTLLKTAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISQYLF 63


>gi|156740401|ref|YP_001430530.1| ribonuclease III [Roseiflexus castenholzii DSM 13941]
 gi|254807896|sp|A7NGC5.1|RNC_ROSCS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|156231729|gb|ABU56512.1| Ribonuclease III [Roseiflexus castenholzii DSM 13941]
          Length = 234

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 9/139 (6%)

Query: 778 CGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFI 837
           C      + D+R+ +Q    R         S L  +V    ++  NERLEFLGDA+V F+
Sbjct: 9   CARLDVTFSDQRLLWQALTHR---------SFLNERVDERLSLFSNERLEFLGDAIVNFL 59

Query: 838 TSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHA 897
            +  +F  FPD  EG L  +RAA+++ + LA  A+R  L    L A G +     +    
Sbjct: 60  ATTLVFERFPDAGEGYLTAWRAALIRTETLASFARRYDLGSHTLLARGEESSGARQRPSL 119

Query: 898 MANCFEALMGALFLDGGID 916
           +A+ FEA++ A+F+D G+D
Sbjct: 120 LADTFEAVVAAIFIDQGLD 138


>gi|70726682|ref|YP_253596.1| ribonuclease III [Staphylococcus haemolyticus JCSC1435]
 gi|90101647|sp|Q4L5T5.1|RNC_STAHJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|68447406|dbj|BAE04990.1| ribonuclease III [Staphylococcus haemolyticus JCSC1435]
          Length = 245

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 59/108 (54%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   S +LF   PD+ EG L   RA IV    L   A +I L   
Sbjct: 52  LAHNERLEFLGDAVLELTVSRYLFDKHPDLPEGNLTKMRATIVCEPSLVIFANKIELNQL 111

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          +++ FEA +GAL+LD G+DV  Q    V++
Sbjct: 112 ILLGKGEEKTGGRTRPSLVSDAFEAFVGALYLDQGLDVVWQFAEKVIF 159


>gi|417844385|ref|ZP_12490429.1| Ribonuclease 3 [Haemophilus haemolyticus M21639]
 gi|341956838|gb|EGT83254.1| Ribonuclease 3 [Haemophilus haemolyticus M21639]
          Length = 227

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 13/162 (8%)

Query: 797 KRGINTLINIMSKLGRKVATESNIT-HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLA 855
           +R I    N ++ L + +   S +T HNERLEFLGD+++ F  +  L+H FP   EG L+
Sbjct: 8   ERKIGYRFNDIALLKQALTHRSAVTQHNERLEFLGDSILNFTIAEALYHQFPRCNEGELS 67

Query: 856 TYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGI 915
             RA +V+   LA LA++  L D+M    G         +  +A+C EA++GA+ LD G+
Sbjct: 68  RMRATLVREPTLAILARQFELGDYMSLGSGELKSGGFRRESILADCVEAIIGAMSLDQGL 127

Query: 916 DVADQV----FSSVLY--------KDNEVRFKQWMYYPQHPL 945
            V  QV    +  +L         KD + R ++++     PL
Sbjct: 128 AVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPL 169


>gi|313896309|ref|ZP_07829862.1| ribonuclease III [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529287|ref|ZP_08030377.1| ribonuclease III [Selenomonas artemidis F0399]
 gi|312975108|gb|EFR40570.1| ribonuclease III [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320138461|gb|EFW30353.1| ribonuclease III [Selenomonas artemidis F0399]
          Length = 238

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/103 (41%), Positives = 64/103 (62%)

Query: 816 TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
           +  +I HNERLEFLGDAV+E  +S +L+  FP   EG L   RA++VQ+  LA LA+R+ 
Sbjct: 43  SRDSIPHNERLEFLGDAVLELASSTYLYKHFPQCSEGELTKMRASLVQSDTLARLARRLH 102

Query: 876 LEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
           L   +   HG       + ++ + N FEA++GA++LD G + A
Sbjct: 103 LGRHLRLGHGELRGGGADRQNNLENVFEAVIGAVYLDRGWESA 145



 Score = 42.7 bits (99), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 965  QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS---NQRLEFLGDTVLQLITSDYL 1021
            +L+ L    GV F++I LL    T  S  Y N +  S   N+RLEFLGD VL+L +S YL
Sbjct: 12   ELERLAAHMGVAFSNIALLDEALTHPS--YANESRDSIPHNERLEFLGDAVLELASSTYL 69

Query: 1022 Y 1022
            Y
Sbjct: 70   Y 70


>gi|303248688|ref|ZP_07334942.1| ribonuclease III [Desulfovibrio fructosovorans JJ]
 gi|302489944|gb|EFL49870.1| ribonuclease III [Desulfovibrio fructosovorans JJ]
          Length = 233

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/97 (46%), Positives = 58/97 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDAV+E   S  LF  FP+  EG L   R+ +V    LA +A R+ LED +L
Sbjct: 40  HNERLEFLGDAVLELSVSEELFARFPEAPEGELTLLRSQLVNESSLAAMALRLSLEDHIL 99

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
              G +          +++ FEA++GALFLDGG  VA
Sbjct: 100 LGKGEENQGGRTRPSLLSDVFEAVIGALFLDGGYGVA 136


>gi|189345713|ref|YP_001942242.1| Ribonuclease III [Chlorobium limicola DSM 245]
 gi|189339860|gb|ACD89263.1| Ribonuclease III [Chlorobium limicola DSM 245]
          Length = 273

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 72/112 (64%), Gaps = 7/112 (6%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           N+RLEFLGDAV++ + S +L+  FP+  EG L++ RA IV  + LA  A+ +GL ++++ 
Sbjct: 77  NQRLEFLGDAVLDMVISEYLYRSFPNSAEGDLSSNRAKIVNRKSLAGFAQTMGLGNYLII 136

Query: 883 AHGSDLCHEVEL-KHAMANCFEALMGALFLDGGID-----VADQVFSSVLYK 928
              +D C+++   + A+A+ FE+L GA++LD G+D     V  QV   V +K
Sbjct: 137 GESAD-CNKIRTSESALADAFESLTGAIYLDKGLDAVRAFVMKQVIEHVDFK 187


>gi|55821300|ref|YP_139742.1| ribonuclease III [Streptococcus thermophilus LMG 18311]
 gi|55823213|ref|YP_141654.1| ribonuclease III [Streptococcus thermophilus CNRZ1066]
 gi|81559233|sp|Q5LZ68.1|RNC_STRT1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|81560422|sp|Q5M3S3.1|RNC_STRT2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|55737285|gb|AAV60927.1| ribonuclease III [Streptococcus thermophilus LMG 18311]
 gi|55739198|gb|AAV62839.1| ribonuclease III [Streptococcus thermophilus CNRZ1066]
          Length = 237

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 65/108 (60%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDA ++ + S++L++ +P+  EG ++  R+ IV+ + LA   K  G E 
Sbjct: 47  NISHNERLEFLGDAALQLVISVYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQ 106

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           ++    G +     E    + + +EA +GAL+LD G+   ++  + V+
Sbjct: 107 YIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGLPAVEKFLNQVM 154



 Score = 47.8 bits (112), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 6/60 (10%)

Query: 967  QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            Q LE   G++F+   LL   FT  S  Y N    L +  N+RLEFLGD  LQL+ S YLY
Sbjct: 14   QKLEQDFGIVFSQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAALQLVISVYLY 71


>gi|71892313|ref|YP_278047.1| RNase III [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|90101614|sp|Q492D1.1|RNC_BLOPB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71796419|gb|AAZ41170.1| RNase III [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 229

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 15/143 (10%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           S+  HNERLEFLGDA++ ++ +  L+H FP I EGG++  RA +V+   LA LA+   L 
Sbjct: 29  SSNQHNERLEFLGDAILNYVIANLLYHRFPHISEGGMSRMRANLVRENTLATLAREFNLG 88

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGG---------------IDVADQVF 922
           D++    G       + +  +AN  EAL+G +FLD                 ID  D   
Sbjct: 89  DYLQLGQGELKSGGYQRESILANTIEALIGGIFLDSNIQTIEILIINWYKIRIDHMDPYA 148

Query: 923 SSVLYKDNEVRFKQWMYYPQHPL 945
           S    KD + R +++M   + PL
Sbjct: 149 SYDTQKDPKTRLQEYMQRRRLPL 171


>gi|346306365|ref|ZP_08848523.1| ribonuclease III [Dorea formicigenerans 4_6_53AFAA]
 gi|345900170|gb|EGX69998.1| ribonuclease III [Dorea formicigenerans 4_6_53AFAA]
          Length = 231

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 102/242 (42%), Gaps = 70/242 (28%)

Query: 732 RSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIH 791
           R+L  LE RI Y FQ+  LL+ A++H SY      N +H            P+Y      
Sbjct: 3   RNLKELEHRIGYTFQDFALLKKAMSHSSY-----VNEEHL-----------PKY------ 40

Query: 792 FQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEE 851
                                          NERLEFLGDAV+E ++S  LF   P   E
Sbjct: 41  -----------------------------ECNERLEFLGDAVLELVSSEFLFFEHPTTPE 71

Query: 852 GGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFL 911
           G L   RA++V    LA  A+ I L +++L   G D     + +   ++  EAL+GA+++
Sbjct: 72  GELTKTRASMVCEPALAFCAREIELGEYLLLGKGEDATGGRKRESVTSDAMEALIGAIYV 131

Query: 912 DGGIDVADQVFSSVLYKDNE-----------------VRFKQWMYYPQHPLQEQEPDGDR 954
           DGG   A +  +  + KD E                   FK+ + Y  H + E+ PD D+
Sbjct: 132 DGGFANAKEFINRFILKDLENKKLFYDSKTILQEIVQAHFKEELSY--HLVGEEGPDHDK 189

Query: 955 QW 956
            +
Sbjct: 190 TF 191


>gi|302389624|ref|YP_003825445.1| RNAse III [Thermosediminibacter oceani DSM 16646]
 gi|302200252|gb|ADL07822.1| RNAse III [Thermosediminibacter oceani DSM 16646]
          Length = 241

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           S+  HN+RLEFLGDAV+E + S  ++  +P+  EG L   RA +V  + LA+L++ + L 
Sbjct: 44  SHQEHNQRLEFLGDAVLELVISEWIYDKYPNYTEGELTKLRALLVCEESLAYLSRELTLG 103

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDV----ADQVFSSVLYKDNEVR 933
           DF++   G ++    E    +A+ FEAL+GA++LD G         + F  V+ +  + +
Sbjct: 104 DFLIMGKGEEITGGREKASILADTFEALIGAMYLDKGFGAITGFVREKFKPVMERAEKGK 163

Query: 934 -FKQWMYYPQHPLQEQEPD 951
            F  +    Q  LQ   PD
Sbjct: 164 LFPDYKTALQEMLQRISPD 182



 Score = 41.6 bits (96), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 965  QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            +L+ L+   GV F+ + +L + F   S  Y         NQRLEFLGD VL+L+ S+++Y
Sbjct: 10   ELKKLQQILGVDFDDLNILNQAFIHPSYAYEKGLSHQEHNQRLEFLGDAVLELVISEWIY 69


>gi|116628032|ref|YP_820651.1| ribonuclease III [Streptococcus thermophilus LMD-9]
 gi|386086915|ref|YP_006002789.1| ribonuclease 3 [Streptococcus thermophilus ND03]
 gi|386344992|ref|YP_006041156.1| ribonuclease III [Streptococcus thermophilus JIM 8232]
 gi|387910019|ref|YP_006340325.1| ribonuclease III [Streptococcus thermophilus MN-ZLW-002]
 gi|122267372|sp|Q03K17.1|RNC_STRTD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116101309|gb|ABJ66455.1| RNAse III [Streptococcus thermophilus LMD-9]
 gi|312278628|gb|ADQ63285.1| Ribonuclease 3 [Streptococcus thermophilus ND03]
 gi|339278453|emb|CCC20201.1| ribonuclease III [Streptococcus thermophilus JIM 8232]
 gi|387574954|gb|AFJ83660.1| ribonuclease III [Streptococcus thermophilus MN-ZLW-002]
          Length = 229

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 65/108 (60%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDA ++ + S++L++ +P+  EG ++  R+ IV+ + LA   K  G E 
Sbjct: 39  NISHNERLEFLGDAALQLVISVYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQ 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           ++    G +     E    + + +EA +GAL+LD G+   ++  + V+
Sbjct: 99  YIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGLPAVEKFLNQVM 146



 Score = 47.8 bits (112), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 6/60 (10%)

Query: 967  QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            Q LE   G++F+   LL   FT  S  Y N    L +  N+RLEFLGD  LQL+ S YLY
Sbjct: 6    QKLEQDFGIVFSQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAALQLVISVYLY 63


>gi|445378760|ref|ZP_21426909.1| ribonuclease III [Streptococcus thermophilus MTCC 5460]
 gi|445392984|ref|ZP_21428634.1| ribonuclease III [Streptococcus thermophilus MTCC 5461]
 gi|444749392|gb|ELW74294.1| ribonuclease III [Streptococcus thermophilus MTCC 5461]
 gi|444749656|gb|ELW74547.1| ribonuclease III [Streptococcus thermophilus MTCC 5460]
          Length = 229

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 65/108 (60%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDA ++ + S++L++ +P+  EG ++  R+ IV+ + LA   K  G E 
Sbjct: 39  NISHNERLEFLGDAALQLVISVYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQ 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           ++    G +     E    + + +EA +GAL+LD G+   ++  + V+
Sbjct: 99  YIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGLPAVEKFLNQVM 146



 Score = 47.8 bits (112), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 6/60 (10%)

Query: 967  QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            Q LE   G++F+   LL   FT  S  Y N    L +  N+RLEFLGD  LQL+ S YLY
Sbjct: 6    QKLEQDFGIVFSQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAALQLVISVYLY 63


>gi|15924223|ref|NP_371757.1| ribonuclease III [Staphylococcus aureus subsp. aureus Mu50]
 gi|156979554|ref|YP_001441813.1| ribonuclease III [Staphylococcus aureus subsp. aureus Mu3]
 gi|255006020|ref|ZP_05144621.2| ribonuclease III [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|22654068|sp|Q931T1.1|RNC_STAAM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043357|sp|A7X1J9.1|RNC_STAA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|14247003|dbj|BAB57395.1| RNase III [Staphylococcus aureus subsp. aureus Mu50]
 gi|156721689|dbj|BAF78106.1| RNase III [Staphylococcus aureus subsp. aureus Mu3]
          Length = 243

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 61/108 (56%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   S +LF   P++ EG L   RA IV    L   A +IGL + 
Sbjct: 52  LDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEM 111

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          +++ FEA +GAL+LD G+D+  +    V++
Sbjct: 112 ILLGKGEEKTGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIF 159


>gi|258452531|ref|ZP_05700537.1| ribonuclease III [Staphylococcus aureus A5948]
 gi|257859749|gb|EEV82591.1| ribonuclease III [Staphylococcus aureus A5948]
          Length = 243

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 61/108 (56%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   S +LF   P++ EG L   RA IV    L   A +IGL + 
Sbjct: 52  LDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEM 111

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          +++ FEA +GAL+LD G+D+  +    V++
Sbjct: 112 ILLGKGEEKTGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIF 159


>gi|167771632|ref|ZP_02443685.1| hypothetical protein ANACOL_03004 [Anaerotruncus colihominis DSM
           17241]
 gi|167666272|gb|EDS10402.1| ribonuclease III [Anaerotruncus colihominis DSM 17241]
          Length = 232

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 82/186 (44%), Gaps = 53/186 (28%)

Query: 733 SLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHF 792
           S + LE RI Y FQN   L +ALTH S                                +
Sbjct: 9   SASALEGRIGYTFQNGRYLDIALTHSS--------------------------------Y 36

Query: 793 QNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEG 852
            N  K+                    NI+ NER EFLGDAV+  + S +LFH +  + EG
Sbjct: 37  ANEVKK--------------------NISSNERQEFLGDAVLSIVVSDYLFHTY-HLAEG 75

Query: 853 GLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLD 912
            L   RAA+V  + L   ++ +GL DF+    G ++         +A+ FEAL+ A++LD
Sbjct: 76  DLTKLRAALVCEKSLWEFSQALGLGDFLKLGRGEEMMGGRTRPSILADAFEALIAAIYLD 135

Query: 913 GGIDVA 918
           GGI+ A
Sbjct: 136 GGIEPA 141


>gi|254468787|ref|ZP_05082193.1| ribonuclease III [beta proteobacterium KB13]
 gi|207087597|gb|EDZ64880.1| ribonuclease III [beta proteobacterium KB13]
          Length = 228

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 79/135 (58%), Gaps = 17/135 (12%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ F  +  LF  FP+I EG L+  RA++V++  LA +A +I L DF+ 
Sbjct: 36  NNERLEFLGDSILNFTIAEALFIKFPNIPEGDLSRLRASLVKSGTLAEIAVKIKLGDFIF 95

Query: 882 YAHGSDLCHEVELKHA-------MANCFEALMGALFLDGGIDVADQVFSSVLYKD--NEV 932
              G       ELK A       +A+ FEA++GAL+LDGG+  A Q F    ++D  +E+
Sbjct: 96  LGEG-------ELKSAGWRRPSILADTFEAIIGALYLDGGLRPA-QTFIHQYFQDWLSEI 147

Query: 933 RFKQWMYYPQHPLQE 947
              +    P+  LQE
Sbjct: 148 NPAKVDKDPKTSLQE 162


>gi|170709347|ref|ZP_02899762.1| ribonuclease III [Bacillus anthracis str. A0389]
 gi|170125742|gb|EDS94654.1| ribonuclease III [Bacillus anthracis str. A0389]
          Length = 245

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAAIV    L   A  +     +L 
Sbjct: 57  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 116

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GA +LD G++        ++Y K NE  F   M Y 
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGAFYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYK 176

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213


>gi|406882844|gb|EKD30540.1| hypothetical protein ACD_78C00013G0002 [uncultured bacterium (gcode
           4)]
          Length = 249

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/145 (39%), Positives = 80/145 (55%), Gaps = 6/145 (4%)

Query: 812 RKVATESNITH----NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHL 867
           R V  E NI H    NERLEFLGDAV+E I++  LFH +PD  E  L   R+A+V+ ++L
Sbjct: 41  RSVLNE-NIIHVSESNERLEFLGDAVLELISTELLFHAYPDKAEWELTDIRSALVRGKNL 99

Query: 868 AHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ-VFSSVL 926
           A +   + L+D++L + G  L       + +AN FEA + AL+LD G + A   V   VL
Sbjct: 100 ASIGLALNLQDYVLVSKGELLAGGNTNPYIVANTFEAFLWALYLDLGYEEAKSFVKKYVL 159

Query: 927 YKDNEVRFKQWMYYPQHPLQEQEPD 951
               E+  K+    P+  LQE   D
Sbjct: 160 STLLEILEKELHVDPKSHLQEIAQD 184


>gi|402303315|ref|ZP_10822411.1| ribonuclease III [Selenomonas sp. FOBRC9]
 gi|400378945|gb|EJP31795.1| ribonuclease III [Selenomonas sp. FOBRC9]
          Length = 238

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/103 (41%), Positives = 64/103 (62%)

Query: 816 TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
           +  +I HNERLEFLGDAV+E  +S +L+  FP   EG L   RA++VQ+  LA LA+R+ 
Sbjct: 43  SRDSIPHNERLEFLGDAVLELASSTYLYKHFPQCSEGELTKMRASLVQSDTLARLARRLH 102

Query: 876 LEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
           L   +   HG       + ++ + N FEA++GA++LD G + A
Sbjct: 103 LGRHLRLGHGELRGGGADRQNNLENVFEAVIGAVYLDRGWESA 145



 Score = 42.7 bits (99), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 965  QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS---NQRLEFLGDTVLQLITSDYL 1021
            +L+ L    GV F++I LL    T  S  Y N +  S   N+RLEFLGD VL+L +S YL
Sbjct: 12   ELERLAAHMGVAFSNIALLDEALTHPS--YANESRDSIPHNERLEFLGDAVLELASSTYL 69

Query: 1022 Y 1022
            Y
Sbjct: 70   Y 70


>gi|332284936|ref|YP_004416847.1| hypothetical protein PT7_1683 [Pusillimonas sp. T7-7]
 gi|330428889|gb|AEC20223.1| hypothetical protein PT7_1683 [Pusillimonas sp. T7-7]
          Length = 252

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/100 (42%), Positives = 58/100 (58%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+V+ F+ +  LF  FP I+EG L+  RA +V+   LA +A R+ L  ++ 
Sbjct: 34  HNERLEFLGDSVLNFVVASLLFVRFPKIDEGDLSRLRANLVKQAALADIAGRLNLSQYLR 93

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
              G            +A+  EAL  A++LDGG D A QV
Sbjct: 94  LGEGELKSGGFRRPSILADALEALFAAVYLDGGFDAAQQV 133


>gi|15926816|ref|NP_374349.1| ribonuclease III [Staphylococcus aureus subsp. aureus N315]
 gi|21282845|ref|NP_645933.1| ribonuclease III [Staphylococcus aureus subsp. aureus MW2]
 gi|49483396|ref|YP_040620.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486072|ref|YP_043293.1| ribonuclease III [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57651802|ref|YP_186108.1| ribonuclease III [Staphylococcus aureus subsp. aureus COL]
 gi|87160069|ref|YP_493823.1| ribonuclease III [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194940|ref|YP_499740.1| ribonuclease III [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|148267724|ref|YP_001246667.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH9]
 gi|150393782|ref|YP_001316457.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH1]
 gi|151221355|ref|YP_001332177.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509405|ref|YP_001575064.1| ribonuclease III [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142023|ref|ZP_03566516.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253315591|ref|ZP_04838804.1| ribonuclease III [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253731850|ref|ZP_04866015.1| RNase III [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253733529|ref|ZP_04867694.1| RNase III [Staphylococcus aureus subsp. aureus TCH130]
 gi|257425287|ref|ZP_05601712.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427947|ref|ZP_05604345.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430580|ref|ZP_05606962.1| ribonuclease III [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433341|ref|ZP_05609699.1| ribonuclease III [Staphylococcus aureus subsp. aureus E1410]
 gi|257436183|ref|ZP_05612230.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876]
 gi|257795711|ref|ZP_05644690.1| ribonuclease III [Staphylococcus aureus A9781]
 gi|258415935|ref|ZP_05682205.1| ribonuclease III [Staphylococcus aureus A9763]
 gi|258419682|ref|ZP_05682649.1| ribonuclease III [Staphylococcus aureus A9719]
 gi|258423926|ref|ZP_05686811.1| ribonuclease III [Staphylococcus aureus A9635]
 gi|258434853|ref|ZP_05688927.1| ribonuclease III [Staphylococcus aureus A9299]
 gi|258444571|ref|ZP_05692900.1| ribonuclease III [Staphylococcus aureus A8115]
 gi|258447596|ref|ZP_05695740.1| ribonuclease III [Staphylococcus aureus A6300]
 gi|258449438|ref|ZP_05697541.1| ribonuclease III [Staphylococcus aureus A6224]
 gi|258454817|ref|ZP_05702781.1| ribonuclease III [Staphylococcus aureus A5937]
 gi|262048131|ref|ZP_06021018.1| RNase III [Staphylococcus aureus D30]
 gi|262051862|ref|ZP_06024078.1| RNase III [Staphylococcus aureus 930918-3]
 gi|269202849|ref|YP_003282118.1| ribonuclease III [Staphylococcus aureus subsp. aureus ED98]
 gi|282892720|ref|ZP_06300955.1| ribonuclease III [Staphylococcus aureus A8117]
 gi|282903787|ref|ZP_06311675.1| ribonuclease III [Staphylococcus aureus subsp. aureus C160]
 gi|282905551|ref|ZP_06313406.1| ribonuclease III [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908526|ref|ZP_06316356.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910805|ref|ZP_06318608.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914009|ref|ZP_06321796.1| ribonuclease III [Staphylococcus aureus subsp. aureus M899]
 gi|282916483|ref|ZP_06324245.1| ribonuclease III [Staphylococcus aureus subsp. aureus D139]
 gi|282918931|ref|ZP_06326666.1| ribonuclease III [Staphylococcus aureus subsp. aureus C427]
 gi|282920016|ref|ZP_06327745.1| ribonuclease III [Staphylococcus aureus A9765]
 gi|282924054|ref|ZP_06331730.1| ribonuclease III [Staphylococcus aureus subsp. aureus C101]
 gi|282927574|ref|ZP_06335190.1| ribonuclease III [Staphylococcus aureus A10102]
 gi|283770295|ref|ZP_06343187.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus H19]
 gi|283957975|ref|ZP_06375426.1| ribonuclease III [Staphylococcus aureus subsp. aureus A017934/97]
 gi|284024157|ref|ZP_06378555.1| ribonuclease III [Staphylococcus aureus subsp. aureus 132]
 gi|293501041|ref|ZP_06666892.1| ribonuclease III [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510001|ref|ZP_06668709.1| ribonuclease III [Staphylococcus aureus subsp. aureus M809]
 gi|293526589|ref|ZP_06671274.1| ribonuclease III [Staphylococcus aureus subsp. aureus M1015]
 gi|294848227|ref|ZP_06788974.1| ribonuclease III [Staphylococcus aureus A9754]
 gi|295407172|ref|ZP_06816973.1| ribonuclease III [Staphylococcus aureus A8819]
 gi|295427719|ref|ZP_06820351.1| ribonuclease III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296274790|ref|ZP_06857297.1| ribonuclease III [Staphylococcus aureus subsp. aureus MR1]
 gi|297208123|ref|ZP_06924554.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297245941|ref|ZP_06929800.1| ribonuclease III [Staphylococcus aureus A8796]
 gi|297591322|ref|ZP_06949960.1| ribonuclease III [Staphylococcus aureus subsp. aureus MN8]
 gi|300912203|ref|ZP_07129646.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381203|ref|ZP_07363856.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|379014424|ref|YP_005290660.1| ribonuclease III [Staphylococcus aureus subsp. aureus VC40]
 gi|379020942|ref|YP_005297604.1| ribonuclease III [Staphylococcus aureus subsp. aureus M013]
 gi|384547477|ref|YP_005736730.1| Ribonuclease III [Staphylococcus aureus subsp. aureus ED133]
 gi|384549988|ref|YP_005739240.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|384861827|ref|YP_005744547.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|384864460|ref|YP_005749819.1| ribonuclease III [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|384867884|ref|YP_005748080.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH60]
 gi|384869767|ref|YP_005752481.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus T0131]
 gi|385781461|ref|YP_005757632.1| ribonuclease III [Staphylococcus aureus subsp. aureus 11819-97]
 gi|386728916|ref|YP_006195299.1| ribonuclease III [Staphylococcus aureus subsp. aureus 71193]
 gi|386830768|ref|YP_006237422.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus HO
           5096 0412]
 gi|387142842|ref|YP_005731235.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
           TW20]
 gi|387150376|ref|YP_005741940.1| Ribonuclease III [Staphylococcus aureus 04-02981]
 gi|387602508|ref|YP_005734029.1| ribonuclease III [Staphylococcus aureus subsp. aureus ST398]
 gi|387780342|ref|YP_005755140.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
           LGA251]
 gi|404478573|ref|YP_006710003.1| ribonuclease III [Staphylococcus aureus 08BA02176]
 gi|415683823|ref|ZP_11449025.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS00]
 gi|415686422|ref|ZP_11450511.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS01]
 gi|415691082|ref|ZP_11453321.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS03]
 gi|416839277|ref|ZP_11902671.1| ribonuclease III [Staphylococcus aureus O11]
 gi|416847441|ref|ZP_11907163.1| ribonuclease III [Staphylococcus aureus O46]
 gi|417650101|ref|ZP_12299878.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21189]
 gi|417651508|ref|ZP_12301271.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21172]
 gi|417653242|ref|ZP_12302976.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21193]
 gi|417797282|ref|ZP_12444480.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21305]
 gi|417797852|ref|ZP_12445038.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21310]
 gi|417802647|ref|ZP_12449704.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21318]
 gi|417887065|ref|ZP_12531204.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21195]
 gi|417891736|ref|ZP_12535793.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21200]
 gi|417892225|ref|ZP_12536279.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21201]
 gi|417896147|ref|ZP_12540114.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21235]
 gi|417899962|ref|ZP_12543861.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21259]
 gi|417901830|ref|ZP_12545706.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21266]
 gi|417903389|ref|ZP_12547236.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21269]
 gi|418281364|ref|ZP_12894175.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21178]
 gi|418282895|ref|ZP_12895652.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21202]
 gi|418286395|ref|ZP_12899041.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21209]
 gi|418308712|ref|ZP_12920318.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21194]
 gi|418312603|ref|ZP_12924112.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21334]
 gi|418316130|ref|ZP_12927574.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21340]
 gi|418317682|ref|ZP_12929098.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21232]
 gi|418321917|ref|ZP_12933256.1| ribonuclease III [Staphylococcus aureus subsp. aureus VCU006]
 gi|418424373|ref|ZP_12997495.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS1]
 gi|418427368|ref|ZP_13000380.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS2]
 gi|418430209|ref|ZP_13003125.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS3a]
 gi|418433174|ref|ZP_13005951.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS4]
 gi|418436845|ref|ZP_13008647.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS5]
 gi|418439717|ref|ZP_13011424.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS6]
 gi|418442769|ref|ZP_13014371.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS7]
 gi|418445828|ref|ZP_13017304.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS8]
 gi|418448772|ref|ZP_13020164.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS9]
 gi|418451596|ref|ZP_13022930.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS10]
 gi|418454652|ref|ZP_13025914.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS11a]
 gi|418457528|ref|ZP_13028731.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS11b]
 gi|418561408|ref|ZP_13125899.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21262]
 gi|418566585|ref|ZP_13130958.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21264]
 gi|418569081|ref|ZP_13133421.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21272]
 gi|418570863|ref|ZP_13135124.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21283]
 gi|418572298|ref|ZP_13136510.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21333]
 gi|418579064|ref|ZP_13143159.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1114]
 gi|418582067|ref|ZP_13146145.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1605]
 gi|418597732|ref|ZP_13161254.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21342]
 gi|418599612|ref|ZP_13163092.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21343]
 gi|418603104|ref|ZP_13166495.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21345]
 gi|418638013|ref|ZP_13200316.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-3]
 gi|418642636|ref|ZP_13204822.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-24]
 gi|418645812|ref|ZP_13207930.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-55]
 gi|418647514|ref|ZP_13209578.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-88]
 gi|418649495|ref|ZP_13211523.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-91]
 gi|418654805|ref|ZP_13216701.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-99]
 gi|418655394|ref|ZP_13217257.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-105]
 gi|418658909|ref|ZP_13220606.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-111]
 gi|418661553|ref|ZP_13223138.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-122]
 gi|418873581|ref|ZP_13427876.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-125]
 gi|418875168|ref|ZP_13429428.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC93]
 gi|418878082|ref|ZP_13432317.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1165]
 gi|418880910|ref|ZP_13435129.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1213]
 gi|418883839|ref|ZP_13438034.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1769]
 gi|418886494|ref|ZP_13440642.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1150]
 gi|418889024|ref|ZP_13443160.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1524]
 gi|418891866|ref|ZP_13445981.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1176]
 gi|418894932|ref|ZP_13449027.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1057]
 gi|418897770|ref|ZP_13451840.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC341D]
 gi|418900640|ref|ZP_13454697.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1214]
 gi|418903442|ref|ZP_13457483.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1770]
 gi|418906168|ref|ZP_13460195.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC345D]
 gi|418908944|ref|ZP_13462947.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG149]
 gi|418911840|ref|ZP_13465823.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG547]
 gi|418914331|ref|ZP_13468303.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC340D]
 gi|418917028|ref|ZP_13470987.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1267]
 gi|418920310|ref|ZP_13474243.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC348]
 gi|418925466|ref|ZP_13479368.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG2018]
 gi|418928490|ref|ZP_13482376.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1612]
 gi|418931303|ref|ZP_13485144.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1750]
 gi|418934135|ref|ZP_13487958.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC128]
 gi|418946941|ref|ZP_13499340.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-157]
 gi|418950559|ref|ZP_13502723.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-160]
 gi|418955496|ref|ZP_13507436.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-189]
 gi|418980062|ref|ZP_13527850.1| Ribonuclease III [Staphylococcus aureus subsp. aureus DR10]
 gi|418982146|ref|ZP_13529854.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1242]
 gi|418985813|ref|ZP_13533499.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1500]
 gi|418988054|ref|ZP_13535727.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1835]
 gi|418991095|ref|ZP_13538756.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1096]
 gi|419774363|ref|ZP_14300333.1| ribonuclease III [Staphylococcus aureus subsp. aureus CO-23]
 gi|419784967|ref|ZP_14310725.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-M]
 gi|421150119|ref|ZP_15609775.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newbould
           305]
 gi|422742350|ref|ZP_16796356.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA177]
 gi|422745536|ref|ZP_16799475.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA131]
 gi|424768083|ref|ZP_18195376.1| ribonuclease III [Staphylococcus aureus subsp. aureus CM05]
 gi|424785063|ref|ZP_18211866.1| Ribonuclease III [Staphylococcus aureus CN79]
 gi|440706059|ref|ZP_20886808.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21282]
 gi|440734679|ref|ZP_20914291.1| ribonuclease III [Staphylococcus aureus subsp. aureus DSM 20231]
 gi|443636860|ref|ZP_21120953.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21236]
 gi|443639588|ref|ZP_21123594.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21196]
 gi|448742261|ref|ZP_21724211.1| ribonuclease III [Staphylococcus aureus KT/314250]
 gi|448744051|ref|ZP_21725955.1| ribonuclease III [Staphylococcus aureus KT/Y21]
 gi|54039243|sp|P66669.1|RNC_STAAW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|54041615|sp|P66668.1|RNC_STAAN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56749389|sp|Q6G9Y0.1|RNC_STAAS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56749418|sp|Q6GHK2.1|RNC_STAAR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|73917582|sp|Q5HGJ9.1|RNC_STAAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|122539710|sp|Q2FZ50.1|RNC_STAA8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|123486215|sp|Q2FHK5.1|RNC_STAA3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043358|sp|A6U152.1|RNC_STAA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043359|sp|A5ISB8.1|RNC_STAA9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043360|sp|A6QGD3.1|RNC_STAAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043361|sp|A8Z3R9.1|RNC_STAAT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|13701033|dbj|BAB42328.1| RNase III [Staphylococcus aureus subsp. aureus N315]
 gi|21204284|dbj|BAB94981.1| RNase III [Staphylococcus aureus subsp. aureus MW2]
 gi|49241525|emb|CAG40211.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244515|emb|CAG42944.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57285988|gb|AAW38082.1| ribonuclease III [Staphylococcus aureus subsp. aureus COL]
 gi|87126043|gb|ABD20557.1| ribonuclease III [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202498|gb|ABD30308.1| ribonuclease III, putative [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740793|gb|ABQ49091.1| RNAse III [Staphylococcus aureus subsp. aureus JH9]
 gi|149946234|gb|ABR52170.1| Ribonuclease III [Staphylococcus aureus subsp. aureus JH1]
 gi|150374155|dbj|BAF67415.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368214|gb|ABX29185.1| ribonuclease III [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724449|gb|EES93178.1| RNase III [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253728583|gb|EES97312.1| RNase III [Staphylococcus aureus subsp. aureus TCH130]
 gi|257271744|gb|EEV03882.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274788|gb|EEV06275.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278708|gb|EEV09327.1| ribonuclease III [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281434|gb|EEV11571.1| ribonuclease III [Staphylococcus aureus subsp. aureus E1410]
 gi|257284465|gb|EEV14585.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876]
 gi|257789683|gb|EEV28023.1| ribonuclease III [Staphylococcus aureus A9781]
 gi|257839271|gb|EEV63745.1| ribonuclease III [Staphylococcus aureus A9763]
 gi|257844267|gb|EEV68649.1| ribonuclease III [Staphylococcus aureus A9719]
 gi|257845955|gb|EEV69984.1| ribonuclease III [Staphylococcus aureus A9635]
 gi|257849214|gb|EEV73196.1| ribonuclease III [Staphylococcus aureus A9299]
 gi|257850064|gb|EEV74017.1| ribonuclease III [Staphylococcus aureus A8115]
 gi|257853787|gb|EEV76746.1| ribonuclease III [Staphylococcus aureus A6300]
 gi|257857426|gb|EEV80324.1| ribonuclease III [Staphylococcus aureus A6224]
 gi|257863200|gb|EEV85964.1| ribonuclease III [Staphylococcus aureus A5937]
 gi|259160263|gb|EEW45291.1| RNase III [Staphylococcus aureus 930918-3]
 gi|259163697|gb|EEW48252.1| RNase III [Staphylococcus aureus D30]
 gi|262075139|gb|ACY11112.1| ribonuclease III [Staphylococcus aureus subsp. aureus ED98]
 gi|269940725|emb|CBI49106.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282314026|gb|EFB44418.1| ribonuclease III [Staphylococcus aureus subsp. aureus C101]
 gi|282316741|gb|EFB47115.1| ribonuclease III [Staphylococcus aureus subsp. aureus C427]
 gi|282319923|gb|EFB50271.1| ribonuclease III [Staphylococcus aureus subsp. aureus D139]
 gi|282322077|gb|EFB52401.1| ribonuclease III [Staphylococcus aureus subsp. aureus M899]
 gi|282325410|gb|EFB55719.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327588|gb|EFB57871.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330843|gb|EFB60357.1| ribonuclease III [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282590577|gb|EFB95654.1| ribonuclease III [Staphylococcus aureus A10102]
 gi|282594732|gb|EFB99716.1| ribonuclease III [Staphylococcus aureus A9765]
 gi|282595405|gb|EFC00369.1| ribonuclease III [Staphylococcus aureus subsp. aureus C160]
 gi|282764717|gb|EFC04842.1| ribonuclease III [Staphylococcus aureus A8117]
 gi|283460442|gb|EFC07532.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus H19]
 gi|283470446|emb|CAQ49657.1| ribonuclease III [Staphylococcus aureus subsp. aureus ST398]
 gi|283790124|gb|EFC28941.1| ribonuclease III [Staphylococcus aureus subsp. aureus A017934/97]
 gi|285816915|gb|ADC37402.1| Ribonuclease III [Staphylococcus aureus 04-02981]
 gi|290920661|gb|EFD97724.1| ribonuclease III [Staphylococcus aureus subsp. aureus M1015]
 gi|291096046|gb|EFE26307.1| ribonuclease III [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466945|gb|EFF09463.1| ribonuclease III [Staphylococcus aureus subsp. aureus M809]
 gi|294825027|gb|EFG41449.1| ribonuclease III [Staphylococcus aureus A9754]
 gi|294968025|gb|EFG44053.1| ribonuclease III [Staphylococcus aureus A8819]
 gi|295128077|gb|EFG57711.1| ribonuclease III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296887366|gb|EFH26268.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297177105|gb|EFH36359.1| ribonuclease III [Staphylococcus aureus A8796]
 gi|297576208|gb|EFH94924.1| ribonuclease III [Staphylococcus aureus subsp. aureus MN8]
 gi|298694526|gb|ADI97748.1| Ribonuclease III [Staphylococcus aureus subsp. aureus ED133]
 gi|300886449|gb|EFK81651.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH70]
 gi|302332837|gb|ADL23030.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751056|gb|ADL65233.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340186|gb|EFM06127.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|312438389|gb|ADQ77460.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH60]
 gi|312829627|emb|CBX34469.1| ribonuclease III [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315131026|gb|EFT87010.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS03]
 gi|315194121|gb|EFU24514.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS00]
 gi|315198472|gb|EFU28801.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140951|gb|EFW32798.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144334|gb|EFW36100.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323441008|gb|EGA98715.1| ribonuclease III [Staphylococcus aureus O11]
 gi|323442325|gb|EGA99955.1| ribonuclease III [Staphylococcus aureus O46]
 gi|329313902|gb|AEB88315.1| Ribonuclease 3 [Staphylococcus aureus subsp. aureus T0131]
 gi|329724757|gb|EGG61262.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21189]
 gi|329727692|gb|EGG64148.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21172]
 gi|329733624|gb|EGG69952.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21193]
 gi|334267330|gb|EGL85794.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21305]
 gi|334274283|gb|EGL92605.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21318]
 gi|334276974|gb|EGL95213.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21310]
 gi|341841048|gb|EGS82520.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21235]
 gi|341843570|gb|EGS84793.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21259]
 gi|341845669|gb|EGS86871.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21266]
 gi|341850010|gb|EGS91143.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21269]
 gi|341851022|gb|EGS91951.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21200]
 gi|341858192|gb|EGS98993.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21201]
 gi|341858487|gb|EGS99277.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21195]
 gi|344177444|emb|CCC87912.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
           LGA251]
 gi|359830251|gb|AEV78229.1| Ribonuclease III [Staphylococcus aureus subsp. aureus M013]
 gi|364522450|gb|AEW65200.1| ribonuclease III [Staphylococcus aureus subsp. aureus 11819-97]
 gi|365165186|gb|EHM57014.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21178]
 gi|365167103|gb|EHM58579.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21209]
 gi|365168492|gb|EHM59830.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21202]
 gi|365224532|gb|EHM65797.1| ribonuclease III [Staphylococcus aureus subsp. aureus VCU006]
 gi|365237738|gb|EHM78581.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21194]
 gi|365238248|gb|EHM79085.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21334]
 gi|365241801|gb|EHM82536.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21340]
 gi|365244950|gb|EHM85602.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21232]
 gi|371969855|gb|EHO87293.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21264]
 gi|371977619|gb|EHO94883.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21262]
 gi|371978266|gb|EHO95516.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21272]
 gi|371983043|gb|EHP00191.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21283]
 gi|371984782|gb|EHP01891.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21333]
 gi|374363121|gb|AEZ37226.1| ribonuclease III [Staphylococcus aureus subsp. aureus VC40]
 gi|374393794|gb|EHQ65098.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21342]
 gi|374393833|gb|EHQ65136.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21345]
 gi|374396270|gb|EHQ67511.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21343]
 gi|375014630|gb|EHS08311.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-99]
 gi|375015749|gb|EHS09393.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-24]
 gi|375022345|gb|EHS15828.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-55]
 gi|375023237|gb|EHS16700.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-3]
 gi|375029480|gb|EHS22807.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-88]
 gi|375029868|gb|EHS23193.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-91]
 gi|375037171|gb|EHS30223.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-111]
 gi|375037264|gb|EHS30309.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-105]
 gi|375038735|gb|EHS31696.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-122]
 gi|375366118|gb|EHS70130.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-125]
 gi|375370979|gb|EHS74771.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-189]
 gi|375376731|gb|EHS80250.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-160]
 gi|375377138|gb|EHS80628.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-157]
 gi|377694204|gb|EHT18569.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1165]
 gi|377694738|gb|EHT19102.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1057]
 gi|377697091|gb|EHT21446.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1114]
 gi|377703108|gb|EHT27424.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1214]
 gi|377704427|gb|EHT28736.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1242]
 gi|377705631|gb|EHT29935.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1500]
 gi|377710477|gb|EHT34715.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1605]
 gi|377714585|gb|EHT38784.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1750]
 gi|377714926|gb|EHT39124.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1769]
 gi|377719842|gb|EHT44012.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1835]
 gi|377723217|gb|EHT47342.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1096]
 gi|377725218|gb|EHT49333.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG547]
 gi|377725447|gb|EHT49560.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1150]
 gi|377731198|gb|EHT55255.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1176]
 gi|377731803|gb|EHT55856.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1213]
 gi|377738402|gb|EHT62411.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1612]
 gi|377742457|gb|EHT66442.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1770]
 gi|377744535|gb|EHT68512.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG2018]
 gi|377750202|gb|EHT74140.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1267]
 gi|377753982|gb|EHT77892.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG149]
 gi|377754534|gb|EHT78443.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1524]
 gi|377757833|gb|EHT81721.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC340D]
 gi|377760805|gb|EHT84681.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC341D]
 gi|377765468|gb|EHT89318.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC345D]
 gi|377765669|gb|EHT89518.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC348]
 gi|377770228|gb|EHT93990.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC93]
 gi|377770878|gb|EHT94637.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC128]
 gi|379992225|gb|EIA13682.1| Ribonuclease III [Staphylococcus aureus subsp. aureus DR10]
 gi|383363568|gb|EID40900.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-M]
 gi|383971889|gb|EID87951.1| ribonuclease III [Staphylococcus aureus subsp. aureus CO-23]
 gi|384230209|gb|AFH69456.1| Ribonuclease III [Staphylococcus aureus subsp. aureus 71193]
 gi|385196160|emb|CCG15781.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus HO
           5096 0412]
 gi|387718604|gb|EIK06562.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS3a]
 gi|387718955|gb|EIK06911.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS2]
 gi|387720280|gb|EIK08192.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS1]
 gi|387725614|gb|EIK13218.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS4]
 gi|387727949|gb|EIK15449.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS5]
 gi|387730679|gb|EIK18040.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS6]
 gi|387735756|gb|EIK22866.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS8]
 gi|387737434|gb|EIK24500.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS7]
 gi|387737988|gb|EIK25042.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS9]
 gi|387744477|gb|EIK31241.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS10]
 gi|387745767|gb|EIK32517.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS11a]
 gi|387747260|gb|EIK33969.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS11b]
 gi|394329509|gb|EJE55611.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newbould
           305]
 gi|402348720|gb|EJU83699.1| ribonuclease III [Staphylococcus aureus subsp. aureus CM05]
 gi|404440062|gb|AFR73255.1| putative ribonuclease III [Staphylococcus aureus 08BA02176]
 gi|408423428|emb|CCJ10839.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
 gi|408425418|emb|CCJ12805.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
 gi|408427406|emb|CCJ14769.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
 gi|408429393|emb|CCJ26558.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
 gi|408431381|emb|CCJ18696.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
 gi|408433375|emb|CCJ20660.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
 gi|408435366|emb|CCJ22626.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
 gi|408437351|emb|CCJ24594.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
 gi|421956473|gb|EKU08802.1| Ribonuclease III [Staphylococcus aureus CN79]
 gi|436431707|gb|ELP29060.1| ribonuclease III [Staphylococcus aureus subsp. aureus DSM 20231]
 gi|436507590|gb|ELP43270.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21282]
 gi|443406795|gb|ELS65366.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21196]
 gi|443406837|gb|ELS65407.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21236]
 gi|445546976|gb|ELY15252.1| ribonuclease III [Staphylococcus aureus KT/314250]
 gi|445562647|gb|ELY18814.1| ribonuclease III [Staphylococcus aureus KT/Y21]
          Length = 243

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 61/108 (56%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   S +LF   P++ EG L   RA IV    L   A +IGL + 
Sbjct: 52  LDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEM 111

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          +++ FEA +GAL+LD G+D+  +    V++
Sbjct: 112 ILLGKGEEKTGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIF 159


>gi|357636754|ref|ZP_09134629.1| ribonuclease III [Streptococcus macacae NCTC 11558]
 gi|357585208|gb|EHJ52411.1| ribonuclease III [Streptococcus macacae NCTC 11558]
          Length = 231

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/108 (37%), Positives = 62/108 (57%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDAV++ I S +LF  +P   EG L+  R+ IV+ + LA  +K  G + 
Sbjct: 39  NISHNERLEFLGDAVLQLIISRYLFLKYPHKAEGELSKMRSMIVREESLAGFSKNCGFDH 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           ++    G +          + + FEA +GALFLD G +  +   + ++
Sbjct: 99  YIKLGKGEERSGGRSRTTILGDLFEAFLGALFLDAGAEAVESFLNQIM 146



 Score = 45.8 bits (107), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 6/53 (11%)

Query: 974  GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            G++F   +LL   FT  S  Y N    L +  N+RLEFLGD VLQLI S YL+
Sbjct: 13   GIVFADKKLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLIISRYLF 63


>gi|334143980|ref|YP_004537136.1| ribonuclease 3 [Thioalkalimicrobium cyclicum ALM1]
 gi|333964891|gb|AEG31657.1| Ribonuclease 3 [Thioalkalimicrobium cyclicum ALM1]
          Length = 231

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/139 (33%), Positives = 75/139 (53%), Gaps = 14/139 (10%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD++V FI +  LF  F ++ EG L+  RA +V+ + LA L++++ L D + 
Sbjct: 41  NNERLEFLGDSLVNFIIADLLFEQFTNLPEGDLSRIRAHLVKGETLAKLSRKLALSDMLT 100

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-------------K 928
              G         +  +A+  EA++ A++ DGG+  A + F   LY             K
Sbjct: 101 LGPGELKSGGYRRESILADALEAIIAAVYQDGGLQ-ACRAFVERLYANKLCELDPQKVGK 159

Query: 929 DNEVRFKQWMYYPQHPLQE 947
           D + R ++W+   QHPL E
Sbjct: 160 DPKTRLQEWLQAQQHPLPE 178


>gi|256827009|ref|YP_003150968.1| ribonuclease III [Cryptobacterium curtum DSM 15641]
 gi|256583152|gb|ACU94286.1| ribonuclease III [Cryptobacterium curtum DSM 15641]
          Length = 279

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 1/130 (0%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           ERLEFLGD+++  + +   FH FPD++EGGL   + ++V    L+ +A  +G  DF+++ 
Sbjct: 48  ERLEFLGDSILGAVVADAAFHRFPDLDEGGLTRIKVSLVAGSSLSQVANELGFADFIIFG 107

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQH 943
                     L  A+ N +EA++ AL+LDGG++VA       L     +   +    P+ 
Sbjct: 108 QSEAGTGRRGLHSALENVYEAVVAALYLDGGMEVARSFIVQTLLGYMSIDMAREPENPKS 167

Query: 944 PLQEQ-EPDG 952
            LQE+ + DG
Sbjct: 168 ALQEKLQEDG 177


>gi|154509007|ref|ZP_02044649.1| hypothetical protein ACTODO_01524 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798641|gb|EDN81061.1| ribonuclease III [Actinomyces odontolyticus ATCC 17982]
          Length = 240

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 1/111 (0%)

Query: 812 RKVATESN-ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
           R  A E+  I +NERLEFLGD+V+  + +  L+  +PD+ E  L+  RAA V  Q LA  
Sbjct: 38  RSYANEAGGIANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRAATVSQQPLAAA 97

Query: 871 AKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           A+RIGL DF+    G  +    +    +++ FEAL+GA +L  G++ A +V
Sbjct: 98  ARRIGLGDFVFLGKGESMHGGRDKDSILSDTFEALIGATYLTSGLEEARRV 148


>gi|194333018|ref|YP_002014878.1| Ribonuclease III [Prosthecochloris aestuarii DSM 271]
 gi|194310836|gb|ACF45231.1| Ribonuclease III [Prosthecochloris aestuarii DSM 271]
          Length = 277

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 62/93 (66%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           N+RLEFLGDAV++ I S HL+ +FP+ +EG L++ R+ IV  + LA  A+ I L + ++ 
Sbjct: 83  NQRLEFLGDAVLDLIISEHLYKLFPESDEGALSSTRSKIVNRKSLADFAQAIALGNQLII 142

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGI 915
              +D     + +  MA+ FEAL+GA++LD G+
Sbjct: 143 GESADEEKIRKSEATMADAFEALIGAIYLDKGL 175


>gi|293192364|ref|ZP_06609475.1| ribonuclease III [Actinomyces odontolyticus F0309]
 gi|292820279|gb|EFF79273.1| ribonuclease III [Actinomyces odontolyticus F0309]
          Length = 240

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 1/111 (0%)

Query: 812 RKVATESN-ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
           R  A E+  I +NERLEFLGD+V+  + +  L+  +PD+ E  L+  RAA V  Q LA  
Sbjct: 38  RSYANEAGGIANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRAATVSQQPLAAA 97

Query: 871 AKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           A+RIGL DF+    G  +    +    +++ FEAL+GA +L  G++ A +V
Sbjct: 98  ARRIGLGDFVFLGKGESMHGGRDKDSILSDTFEALIGATYLTSGLEEARRV 148


>gi|138894713|ref|YP_001125166.1| ribonuclease III [Geobacillus thermodenitrificans NG80-2]
 gi|196247668|ref|ZP_03146370.1| Ribonuclease III [Geobacillus sp. G11MC16]
 gi|189043318|sp|A4IM67.1|RNC_GEOTN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|134266226|gb|ABO66421.1| Ribonuclease III [Geobacillus thermodenitrificans NG80-2]
 gi|196212452|gb|EDY07209.1| Ribonuclease III [Geobacillus sp. G11MC16]
          Length = 246

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 84/178 (47%), Gaps = 12/178 (6%)

Query: 785 YGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITH---------NERLEFLGDAVVE 835
           Y  RR  FQ  +K+   T  N   KL  +  T S+  +         NERLEFLGDAV+E
Sbjct: 11  YEKRRAKFQELQKKIGITFQN--EKLLIQAFTHSSYVNEHRRRFHEDNERLEFLGDAVLE 68

Query: 836 FITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELK 895
              S +LF  FP + EG L   RAAIV    L   A  +   + +L   G +L       
Sbjct: 69  LTVSQYLFQKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRP 128

Query: 896 HAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQEQEPDG 952
             +A+ FEA +GAL+LD G+DV  +     ++ K +E  F   M +     +  + DG
Sbjct: 129 ALLADVFEAFIGALYLDQGMDVVLRFLGQTMFPKIDEGAFSHVMDFKSQLQELVQRDG 186



 Score = 40.4 bits (93), Expect = 5.0,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 965  QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTL----GSNQRLEFLGDTVLQLITSDY 1020
            + Q L+   G+ F + +LL + FT  S  Y N         N+RLEFLGD VL+L  S Y
Sbjct: 17   KFQELQKKIGITFQNEKLLIQAFTHSS--YVNEHRRRFHEDNERLEFLGDAVLELTVSQY 74

Query: 1021 LY 1022
            L+
Sbjct: 75   LF 76


>gi|82750837|ref|YP_416578.1| ribonuclease III [Staphylococcus aureus RF122]
 gi|90101646|sp|Q2YXI3.1|RNC_STAAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|82656368|emb|CAI80786.1| Ribonuclease III [Staphylococcus aureus RF122]
          Length = 243

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 61/108 (56%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   S +LF   P++ EG L   RA IV    L   A +IGL + 
Sbjct: 52  LDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEM 111

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          +++ FEA +GAL+LD G+D+  +    V++
Sbjct: 112 ILLGKGEEKTGGRTRPSLISDVFEAFIGALYLDQGLDIVWKFAEKVIF 159


>gi|418017606|ref|ZP_12657162.1| ribonuclease III [Streptococcus salivarius M18]
 gi|345526455|gb|EGX29766.1| ribonuclease III [Streptococcus salivarius M18]
          Length = 229

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 65/108 (60%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDA ++ + S++L++ +P+  EG ++  R+ IV+ + LA   K  G E 
Sbjct: 39  NISHNERLEFLGDAALQLVISVYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQ 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           ++    G +     E    + + +EA +GAL+LD G+   ++  + V+
Sbjct: 99  YIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGLPAVEKFLNQVM 146



 Score = 47.0 bits (110), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 6/60 (10%)

Query: 967  QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            Q LE   G++F+   LL   FT  S  Y N    L +  N+RLEFLGD  LQL+ S YLY
Sbjct: 6    QKLEQDFGIVFSQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAALQLVISVYLY 63


>gi|312863862|ref|ZP_07724100.1| ribonuclease III [Streptococcus vestibularis F0396]
 gi|322516541|ref|ZP_08069457.1| ribonuclease III [Streptococcus vestibularis ATCC 49124]
 gi|311101398|gb|EFQ59603.1| ribonuclease III [Streptococcus vestibularis F0396]
 gi|322124929|gb|EFX96349.1| ribonuclease III [Streptococcus vestibularis ATCC 49124]
          Length = 229

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 65/108 (60%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDA ++ + S++L+  +P+  EG ++  R+ IV+ + LA  +K  G E 
Sbjct: 39  NISHNERLEFLGDAALQLVISVYLYKRYPNKPEGEMSKMRSTIVREESLAGFSKACGFEQ 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           ++    G +     E    + + +EA +GAL+LD G+   ++  + V+
Sbjct: 99  YIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGLPAVEKFLNQVM 146



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 34/60 (56%), Gaps = 6/60 (10%)

Query: 967  QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            Q LE   G++FN   LL   FT  S  Y N    L +  N+RLEFLGD  LQL+ S YLY
Sbjct: 6    QKLEQDFGIVFNQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAALQLVISVYLY 63


>gi|209695943|ref|YP_002263873.1| ribonuclease III [Aliivibrio salmonicida LFI1238]
 gi|208009896|emb|CAQ80209.1| ribonuclease III (RNase III) [Aliivibrio salmonicida LFI1238]
          Length = 223

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N THNERLEFLGD+++ F+ +  L+H FP ++EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANGTHNERLEFLGDSILSFVVADELYHRFPKVDEGDMSRMRATLVRGHTLAELGREFELG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSV 925
           D++    G            +A+  EA++G ++LD   +V             D +   +
Sbjct: 91  DYLFLGPGELKSGGFRRDSILADAVEAIIGGIYLDSDTEVIRRIILAWYKTRLDSIEPGI 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEYLQGRRKPL 170


>gi|387761093|ref|YP_006068070.1| ribonuclease III [Streptococcus salivarius 57.I]
 gi|339291860|gb|AEJ53207.1| ribonuclease III [Streptococcus salivarius 57.I]
          Length = 237

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 64/108 (59%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDA ++ + S++L+  +P+  EG ++  R+ IV+ + LA   K  G E 
Sbjct: 47  NISHNERLEFLGDAALQLVISVYLYKRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQ 106

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           ++    G +     E    + + +EA +GAL+LD G+   ++  + V+
Sbjct: 107 YIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGLPAVEKFLNQVM 154



 Score = 47.4 bits (111), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 7/70 (10%)

Query: 958  EQSPLLKQL-QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTV 1012
            ++   + QL Q LE   G++F+   LL   FT  S  Y N    L +  N+RLEFLGD  
Sbjct: 4    KKGSFMNQLEQKLEQDFGIVFSQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAA 61

Query: 1013 LQLITSDYLY 1022
            LQL+ S YLY
Sbjct: 62   LQLVISVYLY 71


>gi|402832828|ref|ZP_10881457.1| ribonuclease III [Selenomonas sp. CM52]
 gi|402282311|gb|EJU30869.1| ribonuclease III [Selenomonas sp. CM52]
          Length = 242

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/104 (41%), Positives = 60/104 (57%)

Query: 815 ATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI 874
           A    + HNERLEFLGDAV+E  TS +LF  FP+  EG L   RA+IV+   L+  A  +
Sbjct: 46  AKNKGVVHNERLEFLGDAVLELATSTYLFERFPNRPEGELTKARASIVREATLSRRAAEL 105

Query: 875 GLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
            L +++L  HG            +A+ FEA++GA++LD G   A
Sbjct: 106 KLGEYLLLGHGEASMGGGHRPSMLADAFEAVIGAIYLDCGWQTA 149


>gi|334340306|ref|YP_004545286.1| ribonuclease III [Desulfotomaculum ruminis DSM 2154]
 gi|334091660|gb|AEG60000.1| ribonuclease III [Desulfotomaculum ruminis DSM 2154]
          Length = 249

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 63/108 (58%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
            + HN+RLEFLGDAV+E + S HL+ +FPD  EG L   RAA V    LA +A+ + L  
Sbjct: 42  GLCHNQRLEFLGDAVLELLISEHLYQMFPDRTEGELTKKRAASVCEPSLAKVARGLDLGR 101

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
            +    G +     E    +A+ FEAL+GA++LD G++V  +   + L
Sbjct: 102 CLRMGRGEERSGGRERPSILADAFEALLGAIYLDQGLEVTRKFVLACL 149


>gi|228992577|ref|ZP_04152504.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442]
 gi|228998625|ref|ZP_04158212.1| Ribonuclease 3 [Bacillus mycoides Rock3-17]
 gi|229006125|ref|ZP_04163813.1| Ribonuclease 3 [Bacillus mycoides Rock1-4]
 gi|228755201|gb|EEM04558.1| Ribonuclease 3 [Bacillus mycoides Rock1-4]
 gi|228761093|gb|EEM10052.1| Ribonuclease 3 [Bacillus mycoides Rock3-17]
 gi|228767211|gb|EEM15847.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442]
          Length = 245

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAA+V    L   A  +   + +L 
Sbjct: 57  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAVVCEPSLVRFANELSFGNLVLL 116

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G++   +    ++Y K NE  F   M Y 
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWEFLKEIVYPKINEGAFSHVMDYK 176

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213


>gi|148265180|ref|YP_001231886.1| ribonuclease III [Geobacter uraniireducens Rf4]
 gi|146398680|gb|ABQ27313.1| RNAse III [Geobacter uraniireducens Rf4]
          Length = 240

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/94 (43%), Positives = 57/94 (60%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           N+RLEF GDAV++F+ S  L   FPD  EG L   RA++V    LA LA+ IGL  F+  
Sbjct: 47  NQRLEFFGDAVIDFLLSRMLLERFPDSREGALTKIRASLVDEGSLASLAEEIGLGAFLKL 106

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
             G +       +  +A+ +EALM A++LDGGI+
Sbjct: 107 GRGEERSGGRRKRSLLADAYEALMAAVYLDGGIE 140


>gi|418559245|ref|ZP_13123791.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21252]
 gi|418993852|ref|ZP_13541488.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG290]
 gi|371975536|gb|EHO92830.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21252]
 gi|377745902|gb|EHT69877.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG290]
          Length = 243

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 61/108 (56%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   S +LF   P++ EG L   RA IV    L   A +IGL + 
Sbjct: 52  LDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEM 111

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          +++ FEA +GAL+LD G+D+  +    V++
Sbjct: 112 ILLGKGEEKTGGRTRPSLVSDAFEAFIGALYLDQGLDIVWKFAEKVIF 159


>gi|163856074|ref|YP_001630372.1| ribonuclease III [Bordetella petrii DSM 12804]
 gi|229564350|sp|A9IIJ2.1|RNC_BORPD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|163259802|emb|CAP42103.1| Ribonuclease III [Bordetella petrii]
          Length = 252

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/100 (40%), Positives = 58/100 (58%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+V+ F+ +  LF  FP ++EG L+  RA +V+   LA + +R+ L  ++ 
Sbjct: 33  HNERLEFLGDSVLNFVVAAMLFERFPKLDEGDLSRLRANLVKQASLADIGQRLELSQYLR 92

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
              G            +A+  EA+ GA FLDGG D A +V
Sbjct: 93  LGEGELKSGGFRRPSILADAVEAIFGAAFLDGGFDTARKV 132


>gi|254448879|ref|ZP_05062335.1| ribonuclease III [gamma proteobacterium HTCC5015]
 gi|198261569|gb|EDY85858.1| ribonuclease III [gamma proteobacterium HTCC5015]
          Length = 225

 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 14/142 (9%)

Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
           T+NERLEFLGD+++ F  +  LF  FP+  EG L+  RA++V    LA  AK++ L  F+
Sbjct: 31  TNNERLEFLGDSILNFTVAAELFERFPERPEGDLSRLRASLVDKSSLAAHAKKMDLGPFL 90

Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY------------- 927
               G            +A+  EA++GA++LDGGI+ A Q F   LY             
Sbjct: 91  KLGGGELKSGGWRRDSILADAVEAIIGAIYLDGGIESAQQ-FIRDLYDGDFESLPTANEL 149

Query: 928 KDNEVRFKQWMYYPQHPLQEQE 949
           KD + R ++W+    + L + E
Sbjct: 150 KDAKTRLQEWLQGRHYALPQYE 171


>gi|228477722|ref|ZP_04062351.1| ribonuclease III [Streptococcus salivarius SK126]
 gi|340398604|ref|YP_004727629.1| ribonuclease 3 [Streptococcus salivarius CCHSS3]
 gi|387784355|ref|YP_006070438.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Streptococcus
           salivarius JIM8777]
 gi|228250611|gb|EEK09822.1| ribonuclease III [Streptococcus salivarius SK126]
 gi|338742597|emb|CCB93102.1| ribonuclease 3 (Ribonuclease III) (RNAse III) [Streptococcus
           salivarius CCHSS3]
 gi|338745237|emb|CCB95603.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Streptococcus
           salivarius JIM8777]
          Length = 229

 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 64/108 (59%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDA ++ + S++L+  +P+  EG ++  R+ IV+ + LA   K  G E 
Sbjct: 39  NISHNERLEFLGDAALQLVISVYLYKRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQ 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           ++    G +     E    + + +EA +GAL+LD G+   ++  + V+
Sbjct: 99  YIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGLPAVEKFLNQVM 146



 Score = 47.4 bits (111), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 6/60 (10%)

Query: 967  QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            Q LE   G++F+   LL   FT  S  Y N    L +  N+RLEFLGD  LQL+ S YLY
Sbjct: 6    QKLEQDFGIVFSQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAALQLVISVYLY 63


>gi|15605018|ref|NP_219802.1| ribonuclease III [Chlamydia trachomatis D/UW-3/CX]
 gi|76789019|ref|YP_328105.1| ribonuclease III [Chlamydia trachomatis A/HAR-13]
 gi|237802720|ref|YP_002887914.1| ribonuclease III [Chlamydia trachomatis B/Jali20/OT]
 gi|237804642|ref|YP_002888796.1| ribonuclease III [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311099|ref|ZP_05353669.1| ribonuclease III [Chlamydia trachomatis 6276]
 gi|255317400|ref|ZP_05358646.1| ribonuclease III [Chlamydia trachomatis 6276s]
 gi|376282301|ref|YP_005156127.1| ribonuclease III [Chlamydia trachomatis A2497]
 gi|385239809|ref|YP_005807651.1| ribonuclease III [Chlamydia trachomatis G/9768]
 gi|385240731|ref|YP_005808572.1| ribonuclease III [Chlamydia trachomatis G/11222]
 gi|385242585|ref|YP_005810424.1| ribonuclease III [Chlamydia trachomatis G/9301]
 gi|385243503|ref|YP_005811349.1| Ribonuclease III [Chlamydia trachomatis D-EC]
 gi|385244383|ref|YP_005812227.1| Ribonuclease III [Chlamydia trachomatis D-LC]
 gi|385246195|ref|YP_005815017.1| ribonuclease III [Chlamydia trachomatis G/11074]
 gi|385269975|ref|YP_005813135.1| Ribonuclease III [Chlamydia trachomatis A2497]
 gi|7531193|sp|O84299.1|RNC_CHLTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101618|sp|Q3KM65.1|RNC_CHLTA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|3328712|gb|AAC67890.1| Ribonuclease III [Chlamydia trachomatis D/UW-3/CX]
 gi|76167549|gb|AAX50557.1| ribonuclease III [Chlamydia trachomatis A/HAR-13]
 gi|231272942|emb|CAX09853.1| ribonuclease III [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273954|emb|CAX10746.1| ribonuclease III [Chlamydia trachomatis B/Jali20/OT]
 gi|296435814|gb|ADH17988.1| ribonuclease III [Chlamydia trachomatis G/9768]
 gi|296436739|gb|ADH18909.1| ribonuclease III [Chlamydia trachomatis G/11222]
 gi|296437674|gb|ADH19835.1| ribonuclease III [Chlamydia trachomatis G/11074]
 gi|297140173|gb|ADH96931.1| ribonuclease III [Chlamydia trachomatis G/9301]
 gi|297748426|gb|ADI50972.1| Ribonuclease III [Chlamydia trachomatis D-EC]
 gi|297749306|gb|ADI51984.1| Ribonuclease III [Chlamydia trachomatis D-LC]
 gi|347975115|gb|AEP35136.1| Ribonuclease III [Chlamydia trachomatis A2497]
 gi|371908331|emb|CAX08959.1| ribonuclease III [Chlamydia trachomatis A2497]
 gi|438690220|emb|CCP49477.1| ribonuclease III [Chlamydia trachomatis A/7249]
 gi|438691304|emb|CCP48578.1| ribonuclease III [Chlamydia trachomatis A/5291]
 gi|438692677|emb|CCP47679.1| ribonuclease III [Chlamydia trachomatis A/363]
 gi|440525210|emb|CCP50461.1| ribonuclease III [Chlamydia trachomatis K/SotonK1]
 gi|440527886|emb|CCP53370.1| ribonuclease III [Chlamydia trachomatis D/SotonD5]
 gi|440528777|emb|CCP54261.1| ribonuclease III [Chlamydia trachomatis D/SotonD6]
 gi|440532350|emb|CCP57860.1| ribonuclease III [Chlamydia trachomatis G/SotonG1]
 gi|440533244|emb|CCP58754.1| ribonuclease III [Chlamydia trachomatis Ia/SotonIa1]
 gi|440534138|emb|CCP59648.1| ribonuclease III [Chlamydia trachomatis Ia/SotonIa3]
          Length = 231

 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 1/125 (0%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           +ERLEFLGDAV+  + + HLF +FP + EG L+T RAA+V  +      +++ L + +L 
Sbjct: 44  SERLEFLGDAVLGLVVTEHLFLLFPALNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLI 103

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 942
             G  +        A AN  EA++GA++LDGG+  A Q+   +L  D E      +  P+
Sbjct: 104 GRGEKMQSHRGKISAYANLLEAILGAVYLDGGLSPARQIIVPLL-PDKESILPLMLVNPK 162

Query: 943 HPLQE 947
           + LQ+
Sbjct: 163 NRLQQ 167


>gi|296424770|ref|XP_002841919.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638171|emb|CAZ86110.1| unnamed protein product [Tuber melanosporum]
          Length = 1402

 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 42/229 (18%)

Query: 824  ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF---- 879
            ERLEFLGD  ++  TS+ L+  +   +E  L   R  ++ N++L   AK + + ++    
Sbjct: 961  ERLEFLGDCFLKLATSLSLYTAYHADDECELHVKRMVLICNRYLFTKAKEMKIPEYIQTA 1020

Query: 880  ------------MLYAHGS--------DLCHEVELKHAMANCFEALMGALFLDGGIDVAD 919
                        +L   G+        ++ H +  K ++++  EAL+GA  +D G+D A 
Sbjct: 1021 GFSRRTWYPKMKLLMGKGTTQHNSSKEEISHRLADK-SISDVCEALIGAALIDKGLDGAT 1079

Query: 920  QVFSSVLYKDNEVRFKQWMYY------PQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSS 973
            Q+ +++L +  E   K W  Y      P + LQE  P            ++  + +E   
Sbjct: 1080 QIVTAIL-RTPEHSQKVWADYYNCYTKPAYQLQEPSPSH----------IRVAEDIEELV 1128

Query: 974  GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            G  F H RLL    T  S+ +T   + S QRLEFLGD VL L+   Y++
Sbjct: 1129 GYKFKHPRLLISALTHPSLPFTWDRVPSYQRLEFLGDAVLDLVCVRYMF 1177



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 26/124 (20%)

Query: 816  TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            T   +   +RLEFLGDAV++ +   ++F  +P  +   L  ++ A+V N+ L  +A  +G
Sbjct: 1150 TWDRVPSYQRLEFLGDAVLDLVCVRYMFQKYPHADPQWLTEHKMAMVSNKFLGMVAVEMG 1209

Query: 876  LEDFMLYAHGSDLCH-----EVELKHAMAN--------------------CFEALMGALF 910
                 L   GS L H     EV+++ A AN                      EA +GA+F
Sbjct: 1210 FHR-KLRRMGSVLDHAIREYEVDIQDAKANSNGAVDFWTSLKAPPKALPDVLEAFIGAVF 1268

Query: 911  LDGG 914
            +D G
Sbjct: 1269 VDSG 1272


>gi|65321177|ref|ZP_00394136.1| COG0571: dsRNA-specific ribonuclease [Bacillus anthracis str.
           A2012]
 gi|118479071|ref|YP_896222.1| ribonuclease III [Bacillus thuringiensis str. Al Hakam]
 gi|118418296|gb|ABK86715.1| RNAse III [Bacillus thuringiensis str. Al Hakam]
          Length = 262

 Score = 81.3 bits (199), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAAIV    L   A  +     +L 
Sbjct: 74  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 133

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G++        ++Y K NE  F   M Y 
Sbjct: 134 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYK 193

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 194 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 230


>gi|309776509|ref|ZP_07671491.1| ribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915737|gb|EFP61495.1| ribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
          Length = 227

 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 65/104 (62%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEF+GDAV++  T+  LF + P++ EG + T RA +V  + LA   +++GL  +++ 
Sbjct: 41  NERLEFMGDAVLQLWTTKKLFLLEPELSEGQMTTLRAQLVCEEALAEYNRQLGLGKYLML 100

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
             G +     +    +A+ FEAL+GA+FLD G+   D + S+V+
Sbjct: 101 GVGEEKTGGRQRDSILADMFEALLGAVFLDQGMAAIDIILSAVV 144


>gi|357055497|ref|ZP_09116565.1| ribonuclease III [Clostridium clostridioforme 2_1_49FAA]
 gi|355382616|gb|EHG29713.1| ribonuclease III [Clostridium clostridioforme 2_1_49FAA]
          Length = 234

 Score = 81.3 bits (199), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 65/214 (30%), Positives = 90/214 (42%), Gaps = 53/214 (24%)

Query: 734 LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
           L  LE+RI Y+F+N+ L   ALTH SY        DH+R     C               
Sbjct: 5   LKELEERISYEFKNKNLFTQALTHSSYANEH--RLDHSR-----C--------------- 42

Query: 794 NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
                                        NERLEFLGDAV+E +TS  L+  +  + EG 
Sbjct: 43  -----------------------------NERLEFLGDAVLEIVTSEFLYRKYETLPEGD 73

Query: 854 LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
           L   RA+IV    LA+ A  I L  ++    G D          +++  EAL+GA++LDG
Sbjct: 74  LTKIRASIVCEPTLAYCAGDIELGQYLYLGKGEDATGGRNRNSVVSDAMEALIGAIYLDG 133

Query: 914 GIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
           G   A +     +   N++  KQ  Y  +  LQE
Sbjct: 134 GFANAKEFIHRFIL--NDIEHKQLFYDSKTILQE 165


>gi|344341603|ref|ZP_08772521.1| Ribonuclease 3 [Thiocapsa marina 5811]
 gi|343798535|gb|EGV16491.1| Ribonuclease 3 [Thiocapsa marina 5811]
          Length = 225

 Score = 80.9 bits (198), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 90/172 (52%), Gaps = 21/172 (12%)

Query: 788 RRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFP 847
           RRI  + TR+        ++  L  + A  +N   NERLEFLGDA++ F+ +  L+  FP
Sbjct: 10  RRIGHEFTREE------LLLQALTHRSAASAN---NERLEFLGDALIGFVIAEALWKRFP 60

Query: 848 DIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMG 907
           + +EG L+  RA++V+ + LA LA+ + L D++    G            +A+ FEAL G
Sbjct: 61  EADEGTLSRMRASLVKRETLAALARGLDLGDYLHLGAGELRTGGYARDSILADAFEALWG 120

Query: 908 ALFLDGGIDVADQ----VFSSVLY--------KDNEVRFKQWMYYPQHPLQE 947
           A++LD G   A +    +F++ L         KD + + ++W+   + PL E
Sbjct: 121 AVYLDAGFTSARELVLRLFATRLAQTSATHAGKDPKTQLQEWLQAQRRPLPE 172


>gi|270308287|ref|YP_003330345.1| ribonuclease III [Dehalococcoides sp. VS]
 gi|270154179|gb|ACZ62017.1| ribonuclease III [Dehalococcoides sp. VS]
          Length = 248

 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 61/99 (61%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NER+EFLGDAV+  I +  L+H FPDI+EG L  +R+ +V+ + L  +A  I L +++  
Sbjct: 53  NERMEFLGDAVLGVIFADRLYHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGNYLYL 112

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
             G D+         +A  FEA++ A+++D GID+  +V
Sbjct: 113 GRGEDVSKGRFKPANLAGAFEAVLAAIYIDKGIDITREV 151


>gi|406979999|gb|EKE01673.1| RNase III, dsRNA [uncultured bacterium]
          Length = 223

 Score = 80.9 bits (198), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/98 (40%), Positives = 60/98 (61%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDA + FI +  LFH +PD++EG L+  RA +V    LA LA  + + D + +
Sbjct: 34  NERLEFLGDAALNFIIAAELFHRYPDMKEGDLSRLRANLVNGDVLADLAGELHIGDHLQF 93

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ 920
             G       + K  +A+  EA++GA++LDGG +V  +
Sbjct: 94  GSGELRSGGAKRKSIIADATEAIIGAMYLDGGFEVVQR 131


>gi|342904120|ref|ZP_08725922.1| Ribonuclease 3 [Haemophilus haemolyticus M21621]
 gi|342904579|ref|ZP_08726378.1| Ribonuclease 3 [Haemophilus haemolyticus M21621]
 gi|341953000|gb|EGT79514.1| Ribonuclease 3 [Haemophilus haemolyticus M21621]
 gi|341954129|gb|EGT80623.1| Ribonuclease 3 [Haemophilus haemolyticus M21621]
          Length = 227

 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 13/162 (8%)

Query: 797 KRGINTLINIMSKLGRKVATESNIT-HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLA 855
           +R I    N ++ L + +   S  T HNERLEFLGD+++ F  +  L+H FP   EG L+
Sbjct: 8   ERKIGYRFNDIALLKQALTHRSAATQHNERLEFLGDSILNFTIAEALYHQFPRCNEGELS 67

Query: 856 TYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGI 915
             RA +V+   LA LA++  L D+M    G         +  +A+C EA++GA+ LD G+
Sbjct: 68  RMRATLVREPTLAMLARQFELGDYMSLGSGELKSGGFRRESILADCVEAIIGAMSLDQGL 127

Query: 916 DVADQV----FSSVLY--------KDNEVRFKQWMYYPQHPL 945
            V  QV    +  +L         KD + R ++++     PL
Sbjct: 128 AVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPL 169


>gi|410460645|ref|ZP_11314319.1| ribonuclease III [Bacillus azotoformans LMG 9581]
 gi|409926699|gb|EKN63853.1| ribonuclease III [Bacillus azotoformans LMG 9581]
          Length = 247

 Score = 80.9 bits (198), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/126 (38%), Positives = 70/126 (55%), Gaps = 2/126 (1%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF+ +P + EG L   RAAIV    L + A ++   +++L 
Sbjct: 58  NERLEFLGDAVLELTVSHYLFNNYPSMSEGDLTKLRAAIVCEPSLVNFAHQLSFGEYVLL 117

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G +L         +A+ FE+ +GAL+LD G+D   +    V+Y K +E  F   M Y 
Sbjct: 118 GKGEELTGGRARPALLADVFESFIGALYLDQGLDKVIEFLQKVIYPKISEGVFSHVMDYK 177

Query: 942 QHPLQE 947
              LQE
Sbjct: 178 SQ-LQE 182


>gi|260771275|ref|ZP_05880202.1| ribonuclease III [Vibrio furnissii CIP 102972]
 gi|260613872|gb|EEX39064.1| ribonuclease III [Vibrio furnissii CIP 102972]
          Length = 225

 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 73/140 (52%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANGKHNERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGNTLAELGREFDLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSV 925
           D++    G            +A+  EA++GA++LD  I+VA            + +   V
Sbjct: 91  DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEVARATVLSWYQSRLEAIKPGV 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|160938006|ref|ZP_02085363.1| hypothetical protein CLOBOL_02899 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439000|gb|EDP16755.1| hypothetical protein CLOBOL_02899 [Clostridium bolteae ATCC
           BAA-613]
          Length = 234

 Score = 80.9 bits (198), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 65/214 (30%), Positives = 90/214 (42%), Gaps = 53/214 (24%)

Query: 734 LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
           L  LE+RI Y+F+N+ L   ALTH SY        DH+R     C               
Sbjct: 5   LKELEERIAYEFKNKNLFTQALTHSSYANEH--RLDHSR-----C--------------- 42

Query: 794 NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
                                        NERLEFLGDAV+E +TS  L+  +  + EG 
Sbjct: 43  -----------------------------NERLEFLGDAVLEIVTSEFLYRKYETLPEGD 73

Query: 854 LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
           L   RA+IV    LA+ A  I L  ++    G D          +++  EAL+GA++LDG
Sbjct: 74  LTKIRASIVCEPTLAYCAGDIELGQYLYLGKGEDATGGRNRNSVVSDAMEALIGAIYLDG 133

Query: 914 GIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
           G   A +     +   N++  KQ  Y  +  LQE
Sbjct: 134 GFANAKEFIHRFIL--NDIEHKQLFYDSKTILQE 165


>gi|134299915|ref|YP_001113411.1| ribonuclease III [Desulfotomaculum reducens MI-1]
 gi|189043307|sp|A4J683.1|RNC_DESRM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|134052615|gb|ABO50586.1| RNAse III [Desulfotomaculum reducens MI-1]
          Length = 246

 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 19/145 (13%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
            + HN+RLEFLGDAV+E I S HL+ +FPD  EG L   RA+ V    LA +A+ + L  
Sbjct: 42  GLCHNQRLEFLGDAVLELIISEHLYKMFPDRTEGELTKMRASSVCEPSLAKVARGLDLGR 101

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVL 926
            +    G +     E    +A+ FEAL+GA++LD G++++            D V +  L
Sbjct: 102 CLRMGRGEERSGGRERPSILADAFEALLGAIYLDQGLEISRHFVLNCLSSIIDDVVAGRL 161

Query: 927 YKDNEVRFKQWMYYPQHPLQEQEPD 951
            +D +          Q  LQ+  PD
Sbjct: 162 DRDYKTEL-------QEILQQSSPD 179


>gi|212639596|ref|YP_002316116.1| ribonuclease III [Anoxybacillus flavithermus WK1]
 gi|226735364|sp|B7GGE9.1|RNC_ANOFW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|212561076|gb|ACJ34131.1| DsRNA-specific ribonuclease [Anoxybacillus flavithermus WK1]
          Length = 238

 Score = 80.9 bits (198), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/126 (40%), Positives = 64/126 (50%), Gaps = 2/126 (1%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  FP + EG L   RAAIV    L   A  +   D +L 
Sbjct: 48  NERLEFLGDAVLELTVSQYLFEQFPQMSEGELTKMRAAIVCEPSLVTFAHALSFGDLVLL 107

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G +L         +A+ FEA +GAL+LD GI+   Q     ++ K  E  F   M Y 
Sbjct: 108 GKGEELTGGRMRPSLLADVFEAFIGALYLDQGIEAVVQFLGKTIFPKIREGAFSHVMDYK 167

Query: 942 QHPLQE 947
              LQE
Sbjct: 168 SQ-LQE 172



 Score = 43.1 bits (100), Expect = 0.74,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 7/69 (10%)

Query: 958  EQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG----SNQRLEFLGDTVL 1013
            +Q P +K  Q+ E  +G+ F + +LL + FT  S  Y N         N+RLEFLGD VL
Sbjct: 3    KQRPYVKFKQFQE-QTGIFFRNEKLLIQAFTHSS--YVNEHRKRLHEDNERLEFLGDAVL 59

Query: 1014 QLITSDYLY 1022
            +L  S YL+
Sbjct: 60   ELTVSQYLF 68


>gi|227517298|ref|ZP_03947347.1| ribonuclease III [Enterococcus faecalis TX0104]
 gi|227554519|ref|ZP_03984566.1| ribonuclease III [Enterococcus faecalis HH22]
 gi|229547475|ref|ZP_04436200.1| ribonuclease III [Enterococcus faecalis TX1322]
 gi|229548050|ref|ZP_04436775.1| ribonuclease III [Enterococcus faecalis ATCC 29200]
 gi|256854772|ref|ZP_05560136.1| ribonuclease III [Enterococcus faecalis T8]
 gi|293385103|ref|ZP_06630929.1| ribonuclease III [Enterococcus faecalis R712]
 gi|293389076|ref|ZP_06633548.1| ribonuclease III [Enterococcus faecalis S613]
 gi|307270584|ref|ZP_07551882.1| ribonuclease III [Enterococcus faecalis TX4248]
 gi|307273593|ref|ZP_07554821.1| ribonuclease III [Enterococcus faecalis TX0855]
 gi|307284870|ref|ZP_07565026.1| ribonuclease III [Enterococcus faecalis TX0860]
 gi|307288870|ref|ZP_07568843.1| ribonuclease III [Enterococcus faecalis TX0109]
 gi|307292116|ref|ZP_07571982.1| ribonuclease III [Enterococcus faecalis TX0411]
 gi|312902145|ref|ZP_07761405.1| ribonuclease III [Enterococcus faecalis TX0470]
 gi|312905399|ref|ZP_07764513.1| ribonuclease III [Enterococcus faecalis TX0635]
 gi|312906714|ref|ZP_07765714.1| ribonuclease III [Enterococcus faecalis DAPTO 512]
 gi|312910825|ref|ZP_07769661.1| ribonuclease III [Enterococcus faecalis DAPTO 516]
 gi|312953196|ref|ZP_07772042.1| ribonuclease III [Enterococcus faecalis TX0102]
 gi|384514329|ref|YP_005709422.1| ribonuclease III [Enterococcus faecalis OG1RF]
 gi|384516896|ref|YP_005704201.1| ribonuclease III [Enterococcus faecalis 62]
 gi|397701246|ref|YP_006539034.1| ribonuclease III [Enterococcus faecalis D32]
 gi|422687023|ref|ZP_16745213.1| ribonuclease III [Enterococcus faecalis TX4000]
 gi|422689979|ref|ZP_16748069.1| ribonuclease III [Enterococcus faecalis TX0630]
 gi|422692405|ref|ZP_16750426.1| ribonuclease III [Enterococcus faecalis TX0031]
 gi|422696091|ref|ZP_16754068.1| ribonuclease III [Enterococcus faecalis TX4244]
 gi|422698495|ref|ZP_16756387.1| ribonuclease III [Enterococcus faecalis TX1346]
 gi|422700459|ref|ZP_16758306.1| ribonuclease III [Enterococcus faecalis TX1342]
 gi|422704076|ref|ZP_16761891.1| ribonuclease III [Enterococcus faecalis TX1302]
 gi|422708000|ref|ZP_16765534.1| ribonuclease III [Enterococcus faecalis TX0043]
 gi|422711137|ref|ZP_16768070.1| ribonuclease III [Enterococcus faecalis TX0027]
 gi|422713897|ref|ZP_16770645.1| ribonuclease III [Enterococcus faecalis TX0309A]
 gi|422718478|ref|ZP_16775131.1| ribonuclease III [Enterococcus faecalis TX0309B]
 gi|422720836|ref|ZP_16777443.1| ribonuclease III [Enterococcus faecalis TX0017]
 gi|422723566|ref|ZP_16780101.1| ribonuclease III [Enterococcus faecalis TX2137]
 gi|422725696|ref|ZP_16782154.1| ribonuclease III [Enterococcus faecalis TX0312]
 gi|422728465|ref|ZP_16784882.1| ribonuclease III [Enterococcus faecalis TX0012]
 gi|422732835|ref|ZP_16789164.1| ribonuclease III [Enterococcus faecalis TX0645]
 gi|422736033|ref|ZP_16792298.1| ribonuclease III [Enterococcus faecalis TX1341]
 gi|422738680|ref|ZP_16793871.1| ribonuclease III [Enterococcus faecalis TX2141]
 gi|422868345|ref|ZP_16914888.1| ribonuclease III [Enterococcus faecalis TX1467]
 gi|424674100|ref|ZP_18111026.1| ribonuclease III [Enterococcus faecalis 599]
 gi|424677347|ref|ZP_18114199.1| ribonuclease III [Enterococcus faecalis ERV103]
 gi|424681039|ref|ZP_18117835.1| ribonuclease III [Enterococcus faecalis ERV116]
 gi|424685288|ref|ZP_18121988.1| ribonuclease III [Enterococcus faecalis ERV129]
 gi|424688592|ref|ZP_18125197.1| ribonuclease III [Enterococcus faecalis ERV25]
 gi|424690566|ref|ZP_18127098.1| ribonuclease III [Enterococcus faecalis ERV31]
 gi|424694302|ref|ZP_18130705.1| ribonuclease III [Enterococcus faecalis ERV37]
 gi|424697969|ref|ZP_18134281.1| ribonuclease III [Enterococcus faecalis ERV41]
 gi|424701524|ref|ZP_18137696.1| ribonuclease III [Enterococcus faecalis ERV62]
 gi|424704525|ref|ZP_18140620.1| ribonuclease III [Enterococcus faecalis ERV63]
 gi|424711652|ref|ZP_18143864.1| ribonuclease III [Enterococcus faecalis ERV65]
 gi|424716431|ref|ZP_18145742.1| ribonuclease III [Enterococcus faecalis ERV68]
 gi|424721947|ref|ZP_18151014.1| ribonuclease III [Enterococcus faecalis ERV72]
 gi|424724735|ref|ZP_18153673.1| ribonuclease III [Enterococcus faecalis ERV73]
 gi|424727557|ref|ZP_18156186.1| ribonuclease III [Enterococcus faecalis ERV81]
 gi|424744501|ref|ZP_18172795.1| ribonuclease III [Enterococcus faecalis ERV85]
 gi|424753913|ref|ZP_18181842.1| ribonuclease III [Enterococcus faecalis ERV93]
 gi|424759045|ref|ZP_18186718.1| ribonuclease III [Enterococcus faecalis R508]
 gi|430360155|ref|ZP_19426132.1| ribonuclease III [Enterococcus faecalis OG1X]
 gi|430366186|ref|ZP_19427367.1| ribonuclease III [Enterococcus faecalis M7]
 gi|227075305|gb|EEI13268.1| ribonuclease III [Enterococcus faecalis TX0104]
 gi|227176317|gb|EEI57289.1| ribonuclease III [Enterococcus faecalis HH22]
 gi|229306839|gb|EEN72835.1| ribonuclease III [Enterococcus faecalis ATCC 29200]
 gi|229307399|gb|EEN73386.1| ribonuclease III [Enterococcus faecalis TX1322]
 gi|256710332|gb|EEU25376.1| ribonuclease III [Enterococcus faecalis T8]
 gi|291077580|gb|EFE14944.1| ribonuclease III [Enterococcus faecalis R712]
 gi|291081544|gb|EFE18507.1| ribonuclease III [Enterococcus faecalis S613]
 gi|306496769|gb|EFM66320.1| ribonuclease III [Enterococcus faecalis TX0411]
 gi|306500142|gb|EFM69486.1| ribonuclease III [Enterococcus faecalis TX0109]
 gi|306503129|gb|EFM72386.1| ribonuclease III [Enterococcus faecalis TX0860]
 gi|306509606|gb|EFM78648.1| ribonuclease III [Enterococcus faecalis TX0855]
 gi|306513165|gb|EFM81799.1| ribonuclease III [Enterococcus faecalis TX4248]
 gi|310627362|gb|EFQ10645.1| ribonuclease III [Enterococcus faecalis DAPTO 512]
 gi|310628813|gb|EFQ12096.1| ribonuclease III [Enterococcus faecalis TX0102]
 gi|310631128|gb|EFQ14411.1| ribonuclease III [Enterococcus faecalis TX0635]
 gi|311288848|gb|EFQ67404.1| ribonuclease III [Enterococcus faecalis DAPTO 516]
 gi|311290809|gb|EFQ69365.1| ribonuclease III [Enterococcus faecalis TX0470]
 gi|315026454|gb|EFT38386.1| ribonuclease III [Enterococcus faecalis TX2137]
 gi|315028377|gb|EFT40309.1| ribonuclease III [Enterococcus faecalis TX4000]
 gi|315031785|gb|EFT43717.1| ribonuclease III [Enterococcus faecalis TX0017]
 gi|315034802|gb|EFT46734.1| ribonuclease III [Enterococcus faecalis TX0027]
 gi|315145468|gb|EFT89484.1| ribonuclease III [Enterococcus faecalis TX2141]
 gi|315146605|gb|EFT90621.1| ribonuclease III [Enterococcus faecalis TX4244]
 gi|315151034|gb|EFT95050.1| ribonuclease III [Enterococcus faecalis TX0012]
 gi|315152764|gb|EFT96780.1| ribonuclease III [Enterococcus faecalis TX0031]
 gi|315154690|gb|EFT98706.1| ribonuclease III [Enterococcus faecalis TX0043]
 gi|315159400|gb|EFU03417.1| ribonuclease III [Enterococcus faecalis TX0312]
 gi|315161159|gb|EFU05176.1| ribonuclease III [Enterococcus faecalis TX0645]
 gi|315164397|gb|EFU08414.1| ribonuclease III [Enterococcus faecalis TX1302]
 gi|315167205|gb|EFU11222.1| ribonuclease III [Enterococcus faecalis TX1341]
 gi|315171217|gb|EFU15234.1| ribonuclease III [Enterococcus faecalis TX1342]
 gi|315172944|gb|EFU16961.1| ribonuclease III [Enterococcus faecalis TX1346]
 gi|315573246|gb|EFU85437.1| ribonuclease III [Enterococcus faecalis TX0309B]
 gi|315577147|gb|EFU89338.1| ribonuclease III [Enterococcus faecalis TX0630]
 gi|315581180|gb|EFU93371.1| ribonuclease III [Enterococcus faecalis TX0309A]
 gi|323479029|gb|ADX78468.1| ribonuclease III [Enterococcus faecalis 62]
 gi|327536218|gb|AEA95052.1| ribonuclease III [Enterococcus faecalis OG1RF]
 gi|329575676|gb|EGG57203.1| ribonuclease III [Enterococcus faecalis TX1467]
 gi|397337885|gb|AFO45557.1| ribonuclease III [Enterococcus faecalis D32]
 gi|402352044|gb|EJU86909.1| ribonuclease III [Enterococcus faecalis 599]
 gi|402352426|gb|EJU87277.1| ribonuclease III [Enterococcus faecalis ERV116]
 gi|402354640|gb|EJU89443.1| ribonuclease III [Enterococcus faecalis ERV103]
 gi|402359269|gb|EJU93911.1| ribonuclease III [Enterococcus faecalis ERV129]
 gi|402360051|gb|EJU94660.1| ribonuclease III [Enterococcus faecalis ERV25]
 gi|402363764|gb|EJU98222.1| ribonuclease III [Enterococcus faecalis ERV31]
 gi|402370958|gb|EJV05137.1| ribonuclease III [Enterococcus faecalis ERV37]
 gi|402371555|gb|EJV05712.1| ribonuclease III [Enterococcus faecalis ERV62]
 gi|402374205|gb|EJV08241.1| ribonuclease III [Enterococcus faecalis ERV41]
 gi|402381547|gb|EJV15250.1| ribonuclease III [Enterococcus faecalis ERV63]
 gi|402383084|gb|EJV16701.1| ribonuclease III [Enterococcus faecalis ERV65]
 gi|402387948|gb|EJV21400.1| ribonuclease III [Enterococcus faecalis ERV68]
 gi|402389984|gb|EJV23356.1| ribonuclease III [Enterococcus faecalis ERV72]
 gi|402393981|gb|EJV27183.1| ribonuclease III [Enterococcus faecalis ERV73]
 gi|402396232|gb|EJV29301.1| ribonuclease III [Enterococcus faecalis ERV81]
 gi|402398832|gb|EJV31749.1| ribonuclease III [Enterococcus faecalis ERV85]
 gi|402403439|gb|EJV36113.1| ribonuclease III [Enterococcus faecalis ERV93]
 gi|402405221|gb|EJV37819.1| ribonuclease III [Enterococcus faecalis R508]
 gi|429513067|gb|ELA02660.1| ribonuclease III [Enterococcus faecalis OG1X]
 gi|429517200|gb|ELA06667.1| ribonuclease III [Enterococcus faecalis M7]
          Length = 243

 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 62/108 (57%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           ++ NERLEFLGDAV+E I S +L+  FP++ EG L   RAAIV+   LA  AK    +++
Sbjct: 54  LSDNERLEFLGDAVLELIVSQYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNY 113

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          + + FEA +GAL+LD  +  A +    V++
Sbjct: 114 ILLGKGEEASGGRTRASLLCDLFEAFLGALYLDQKVGAAKKFIEDVIF 161



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 34/53 (64%), Gaps = 6/53 (11%)

Query: 974  GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            G++F+ + LL + FT  S  Y N    L L  N+RLEFLGD VL+LI S YLY
Sbjct: 27   GIVFHDVNLLEQAFTHSS--YVNEHRYLKLSDNERLEFLGDAVLELIVSQYLY 77


>gi|417843773|ref|ZP_12489841.1| Ribonuclease 3 [Haemophilus haemolyticus M21127]
 gi|341948686|gb|EGT75306.1| Ribonuclease 3 [Haemophilus haemolyticus M21127]
          Length = 227

 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 13/162 (8%)

Query: 797 KRGINTLINIMSKLGRKVATESNIT-HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLA 855
           +R I    N ++ L + +   S  T HNERLEFLGD+++ F  +  L+H FP   EG L+
Sbjct: 8   ERKIGYRFNNIALLKQALTHRSAATQHNERLEFLGDSILNFTIAEALYHQFPRCNEGELS 67

Query: 856 TYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGI 915
             RA +V+   LA LA++  L D+M    G         +  +A+C EA++GA+ LD G+
Sbjct: 68  RMRATLVREPTLAMLARQFELGDYMSLGSGELKSGGFRRESILADCVEAIIGAMSLDQGL 127

Query: 916 DVADQV----FSSVLY--------KDNEVRFKQWMYYPQHPL 945
            V  QV    +  +L         KD + R ++++     PL
Sbjct: 128 AVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPL 169


>gi|379795598|ref|YP_005325596.1| ribonuclease III [Staphylococcus aureus subsp. aureus MSHR1132]
 gi|356872588|emb|CCE58927.1| ribonuclease III [Staphylococcus aureus subsp. aureus MSHR1132]
          Length = 243

 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 61/108 (56%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   S +LF   P++ EG L   RA IV    L   A +IGL + 
Sbjct: 52  LDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEM 111

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          +++ FEA +GA++LD G+DV  +    V++
Sbjct: 112 ILLGKGEEKTGGRTRPSLISDAFEAFIGAMYLDQGLDVVWRFAEKVIF 159


>gi|218885347|ref|YP_002434668.1| ribonuclease III [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|226735370|sp|B8DPB3.1|RNC_DESVM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|218756301|gb|ACL07200.1| Ribonuclease III [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 230

 Score = 80.9 bits (198), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/110 (40%), Positives = 62/110 (56%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           + ++ HNERLEFLGDAV+E   S  LF  FP   EG L   RA +V    LA LA+ + L
Sbjct: 33  QEHVEHNERLEFLGDAVLELCVSEELFARFPGAREGDLTRMRARLVSKPALAELARDLQL 92

Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           E ++    G +     E    +++  EA++GA+FLDGG + A  V   VL
Sbjct: 93  ELYLRLGRGEESQGGRERSSLLSDALEAMLGAVFLDGGYERARAVVRHVL 142


>gi|403383371|ref|ZP_10925428.1| ribonuclease 3 [Kurthia sp. JC30]
          Length = 251

 Score = 80.9 bits (198), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 61/110 (55%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S  LF  FP + EG L   RAAIV    L   A  +   +F+L 
Sbjct: 59  NERLEFLGDAVLELTVSKFLFLKFPKMTEGELTKLRAAIVCEPSLVIFANELNFGEFVLL 118

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV 932
             G ++    E    +A+CFEA +GAL+LD G++       +V++   E+
Sbjct: 119 GKGEEITGGRERPALLADCFEAFVGALYLDQGLETVVGFLETVVFPKVEL 168


>gi|300113378|ref|YP_003759953.1| ribonuclease III [Nitrosococcus watsonii C-113]
 gi|299539315|gb|ADJ27632.1| ribonuclease III [Nitrosococcus watsonii C-113]
          Length = 233

 Score = 80.9 bits (198), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 77/140 (55%), Gaps = 14/140 (10%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ F+ +  L+  FP  +EG L+  RA +V+ + LA LA+ + + D ++
Sbjct: 35  NNERLEFLGDSILNFLIADFLYSGFPKAQEGKLSRLRATLVKGETLAELARELEIGDHLI 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL--------------Y 927
              G            +A+ FEA++GA++LDGG++   Q+ SS+                
Sbjct: 95  LGLGELKSGGYRRTSILADAFEAVIGAVYLDGGLEACRQLVSSLYRDRLETLTDEVLLNL 154

Query: 928 KDNEVRFKQWMYYPQHPLQE 947
           KD + R ++++   Q PL +
Sbjct: 155 KDPKTRLQEYLQARQFPLPD 174


>gi|404418465|ref|ZP_11000232.1| ribonuclease III [Staphylococcus arlettae CVD059]
 gi|403489058|gb|EJY94636.1| ribonuclease III [Staphylococcus arlettae CVD059]
          Length = 245

 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 57/97 (58%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   S +LF  +P++ EG L   RA IV    L   AK+I L D 
Sbjct: 52  LEHNERLEFLGDAVLELTVSRYLFDKYPELPEGNLTKMRATIVCEPSLVIFAKKIRLNDL 111

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
           +L   G +          +++ FEA +GAL+LD G+D
Sbjct: 112 ILLGKGEEKTGGRLRPSLVSDAFEAFVGALYLDQGLD 148


>gi|307276679|ref|ZP_07557797.1| ribonuclease III [Enterococcus faecalis TX2134]
 gi|306506789|gb|EFM75941.1| ribonuclease III [Enterococcus faecalis TX2134]
          Length = 243

 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 62/108 (57%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           ++ NERLEFLGDAV+E I S +L+  FP++ EG L   RAAIV+   LA  AK    +++
Sbjct: 54  LSDNERLEFLGDAVLELIVSQYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNY 113

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          + + FEA +GAL+LD  +  A +    V++
Sbjct: 114 ILLGKGEEASGGRTRASLLCDLFEAFLGALYLDQKVGAAKKFIEDVIF 161



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 34/53 (64%), Gaps = 6/53 (11%)

Query: 974  GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            G++F+ + LL + FT  S  Y N    L L  N+RLEFLGD VL+LI S YLY
Sbjct: 27   GIVFHDVNLLEQAFTHSS--YVNEHRYLKLSDNERLEFLGDAVLELIVSQYLY 77


>gi|403745343|ref|ZP_10954281.1| Ribonuclease III [Alicyclobacillus hesperidum URH17-3-68]
 gi|403121571|gb|EJY55864.1| Ribonuclease III [Alicyclobacillus hesperidum URH17-3-68]
          Length = 241

 Score = 80.5 bits (197), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/105 (40%), Positives = 60/105 (57%)

Query: 812 RKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLA 871
           R    ++++  NERLEFLGDAV+E I S  L+H +P + EG L   RAAIV    L   A
Sbjct: 32  RNEHRKAHVEDNERLEFLGDAVLELIISDFLYHTYPRLPEGELTRMRAAIVCEPSLVVFA 91

Query: 872 KRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
           +R+  E F+    G +          +A+ FEA +GAL++D GI+
Sbjct: 92  RRLSFEQFIRLGRGEERSGGRSRPALLADVFEAFLGALYIDQGIE 136



 Score = 40.8 bits (94), Expect = 3.8,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 977  FNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            F  + LL + FT  S    +    +  N+RLEFLGD VL+LI SD+LY
Sbjct: 16   FTDLNLLKQAFTHASYRNEHRKAHVEDNERLEFLGDAVLELIISDFLY 63


>gi|220928138|ref|YP_002505047.1| ribonuclease III [Clostridium cellulolyticum H10]
 gi|219998466|gb|ACL75067.1| ribonuclease III [Clostridium cellulolyticum H10]
          Length = 236

 Score = 80.5 bits (197), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 56/194 (28%), Positives = 87/194 (44%), Gaps = 51/194 (26%)

Query: 725 ICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPE 784
           +  +R+   ++ LED I Y F+N+ ++  A+TH SY                        
Sbjct: 1   MAEIRYDNRISELEDIIGYTFKNKDIIFAAVTHSSYANE--------------------- 39

Query: 785 YGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFH 844
                   + +RK                      + +NERLEFLGD+V+    S +LF 
Sbjct: 40  --------KKSRK----------------------LKYNERLEFLGDSVLGLTISEYLFQ 69

Query: 845 VFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEA 904
             P++ EG L+  RA IV    L+  A  IGL  ++L   G +L    E    +++ FEA
Sbjct: 70  KKPNLPEGELSVTRAKIVCENSLSQCATDIGLGKYLLLGKGEELSGGREKISLLSDAFEA 129

Query: 905 LMGALFLDGGIDVA 918
           L+GAL++DGG + A
Sbjct: 130 LIGALYIDGGFETA 143


>gi|237807623|ref|YP_002892063.1| ribonuclease III [Tolumonas auensis DSM 9187]
 gi|237499884|gb|ACQ92477.1| ribonuclease III [Tolumonas auensis DSM 9187]
          Length = 223

 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 73/136 (53%), Gaps = 12/136 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++  + +  L+H FP++ EG ++  RA +V+ + LA LA+   L D+++
Sbjct: 35  HNERLEFLGDSILSLVIAEVLYHRFPNVSEGDMSRMRATLVREKTLAELAREFALGDYLI 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLYKD 929
              G         +  +A+  EAL+GA++LD  +D              D +   V  KD
Sbjct: 95  LGPGELKSGGYRRESILADTVEALIGAIYLDSDLDGIRTLMLNWYNERLDSIRPGVEQKD 154

Query: 930 NEVRFKQWMYYPQHPL 945
            + R ++++   + PL
Sbjct: 155 PKTRLQEFLQGRRRPL 170



 Score = 42.0 bits (97), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 5/58 (8%)

Query: 965  QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            +L  LE   G  F +  LL R  T RS G  +     N+RLEFLGD++L L+ ++ LY
Sbjct: 4    KLSRLEQKLGYPFQNKDLLVRAITHRSAGSRH-----NERLEFLGDSILSLVIAEVLY 56


>gi|218132444|ref|ZP_03461248.1| hypothetical protein BACPEC_00303 [[Bacteroides] pectinophilus ATCC
           43243]
 gi|217992554|gb|EEC58556.1| ribonuclease III [[Bacteroides] pectinophilus ATCC 43243]
          Length = 234

 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 76/127 (59%), Gaps = 4/127 (3%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDAV+E ++S +LF+   D+ EG L+  RA++V    LA  A+ I L+ +++
Sbjct: 50  NNERLEFLGDAVLELVSSEYLFNEHKDVNEGSLSKLRASMVCEPSLAFCARDISLQKYIM 109

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ-VFSSVLYKDNEVRFKQWMYY 940
              G D     +     ++  EA++GA++LDGG + A + + + VL   N++  K+  Y 
Sbjct: 110 LGKGEDATGGRQRDSITSDALEAVIGAIYLDGGFEPAKKFIMAHVL---NDLDNKKLFYD 166

Query: 941 PQHPLQE 947
            +  LQE
Sbjct: 167 SKTILQE 173



 Score = 43.9 bits (102), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 6/61 (9%)

Query: 966  LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT----LGSNQRLEFLGDTVLQLITSDYL 1021
            L  L+ + G  F+ + LL    T  S  Y N       G+N+RLEFLGD VL+L++S+YL
Sbjct: 13   LNELQQAMGYSFDDVSLLKHALTHSS--YANELRINKTGNNERLEFLGDAVLELVSSEYL 70

Query: 1022 Y 1022
            +
Sbjct: 71   F 71


>gi|421616853|ref|ZP_16057854.1| ribonuclease III [Pseudomonas stutzeri KOS6]
 gi|409781083|gb|EKN60687.1| ribonuclease III [Pseudomonas stutzeri KOS6]
          Length = 229

 Score = 80.5 bits (197), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/99 (42%), Positives = 61/99 (61%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDA++ F+    LF+ FP   EG L+  RA +V+ + LA LA+   L D+M 
Sbjct: 35  NNERLEFLGDAILNFVAGEALFNHFPQAREGQLSRLRARLVKGETLAVLARGFELGDYMR 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ 920
              G         +  +A+  EAL+GA++LDGG+DVA +
Sbjct: 95  LGSGELKSGGYRRESILADTLEALIGAIYLDGGMDVARE 133


>gi|315604391|ref|ZP_07879457.1| ribonuclease III [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314097|gb|EFU62148.1| ribonuclease III [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 241

 Score = 80.5 bits (197), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 1/111 (0%)

Query: 812 RKVATESN-ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
           R  A E+  I +NERLEFLGD+V+  + +  L+  +PD+ E  L+  RAA V  Q LA  
Sbjct: 38  RSYANEAGGIANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRAATVSQQPLAAA 97

Query: 871 AKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           A+RIGL DF+    G       +    +++ FEAL+GA +L  G++ A +V
Sbjct: 98  ARRIGLGDFVFLGKGESTHGGRDKDSILSDTFEALIGATYLTSGLEEARRV 148


>gi|52141634|ref|YP_085190.1| ribonuclease III [Bacillus cereus E33L]
 gi|81686565|sp|Q636H7.1|RNC_BACCZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|51975103|gb|AAU16653.1| ribonuclease III [Bacillus cereus E33L]
          Length = 245

 Score = 80.5 bits (197), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAAIV    L   A  +     +L 
Sbjct: 57  NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGGLVLL 116

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G++        ++Y K NE  F   M Y 
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYK 176

Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
                              LQE+ P  +R++V +  L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213


>gi|328865990|gb|EGG14376.1| putative RNase III [Dictyostelium fasciculatum]
          Length = 576

 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 134/318 (42%), Gaps = 72/318 (22%)

Query: 709  GIMCDMVQHAML---IPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFG 765
            GI  +M  HAM    I V I  L++ + ++  +  I   F+N  LL+   THPS ++   
Sbjct: 106  GITSEM--HAMAKVAILVYIPELKWWKKVDQFQSNI-ISFENDLLLREIFTHPSSKKINS 162

Query: 766  TNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNER 825
             NP               EY                       KL + +   +  T N+R
Sbjct: 163  LNP--------------AEY-----------------------KLFKDLLPFT--TDNQR 183

Query: 826  LEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHG 885
            LEFLGD++++F  SI+LF  +P   EG L T R+ +  N +L       G+ + + Y+  
Sbjct: 184  LEFLGDSILKFCASIYLFFKYPKANEGELTTRRSELTNNTYLLEKCNEWGIIELLRYSST 243

Query: 886  SDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPL 945
             D      +K   A+  EA+ GA+FL+ G     +     +Y D++        Y   P 
Sbjct: 244  ED------IKKPKADVMEAMFGAIFLERGFKEVYRFIVHTVYNDHQ--------YSTLPT 289

Query: 946  QEQEPDGDRQWVE-QSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQR 1004
             +     +RQ    QS  L  +Q       V  + + LL    T   +G  N    S QR
Sbjct: 290  FKCNHSFERQLSSIQSKFLFDVQ-------VKISKVCLLEDAIT--CLGDQNY---SYQR 337

Query: 1005 LEFLGDTVLQLITSDYLY 1022
            LEFLGD+ L  I S +LY
Sbjct: 338  LEFLGDSYLDGIVSHFLY 355



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 19/164 (11%)

Query: 803 LINIMSKLGRKVATESNIT-------HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLA 855
           L ++  K+ +    E  IT         +RLEFLGD+ ++ I S  L+  FP   EG L+
Sbjct: 308 LFDVQVKISKVCLLEDAITCLGDQNYSYQRLEFLGDSYLDGIVSHFLYREFPLENEGFLS 367

Query: 856 TYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGI 915
             RA +V+N+ LA +++RI      LY   +D       K  + + FEA +G + LD  +
Sbjct: 368 QARALLVRNEALAQISQRIK-----LYQLVTDPSATFSTKR-LGDLFEAFIGGVLLDNEL 421

Query: 916 DVADQVFSSV--LYKDNEVRFKQWMYYPQHPL----QEQEPDGD 953
           +   ++   +  L KD  V   +  Y    P+     E  PD +
Sbjct: 422 EDTKKLIYRLLNLNKDYVVEILEAHYASSRPVPHNSTEMIPDSE 465


>gi|375129945|ref|YP_004992044.1| ribonuclease III [Vibrio furnissii NCTC 11218]
 gi|315179118|gb|ADT86032.1| ribonuclease III [Vibrio furnissii NCTC 11218]
          Length = 202

 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 73/140 (52%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L 
Sbjct: 8   ANGKHNERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGNTLAELGREFDLG 67

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSV 925
           D++    G            +A+  EA++GA++LD  I+VA            + +   V
Sbjct: 68  DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEVARATVLSWYQSRLEAIKPGV 127

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 128 SQKDPKTRLQEFLQGRRKPL 147


>gi|374334746|ref|YP_005091433.1| ribonuclease III [Oceanimonas sp. GK1]
 gi|372984433|gb|AEY00683.1| ribonuclease III [Oceanimonas sp. GK1]
          Length = 222

 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 12/136 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++  + +  LFH FP + EG ++  RA +V+ + LA LA+   L ++++
Sbjct: 34  HNERLEFLGDSILSMVIADALFHRFPKVNEGDMSRMRATLVREKTLAELARAFELGEYLI 93

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS------------VLYKD 929
              G         +  +A+  EAL+GA++LD GI+   Q+  S            V  KD
Sbjct: 94  LGPGELKSGGYRRESILADAVEALIGAIYLDSGIERITQLLLSWYDSRLNDIQPGVEQKD 153

Query: 930 NEVRFKQWMYYPQHPL 945
            + R ++ +   + PL
Sbjct: 154 PKTRLQELLQGKRKPL 169



 Score = 43.9 bits (102), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            +K+L  L+   G  FN   LL R  T RS G  +     N+RLEFLGD++L ++ +D L+
Sbjct: 1    MKKLNNLQKQLGHTFNDEALLVRALTHRSAGSRH-----NERLEFLGDSILSMVIADALF 55


>gi|332685822|ref|YP_004455596.1| ribonuclease III [Melissococcus plutonius ATCC 35311]
 gi|379728091|ref|YP_005320276.1| ribonuclease III [Melissococcus plutonius DAT561]
 gi|332369831|dbj|BAK20787.1| ribonuclease III [Melissococcus plutonius ATCC 35311]
 gi|376318994|dbj|BAL62781.1| ribonuclease III [Melissococcus plutonius DAT561]
          Length = 230

 Score = 80.5 bits (197), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 6/157 (3%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           ++ NER+EFLGDAV+E I S +L+  + ++ EG L   RAAIV+   LA  AK    + +
Sbjct: 41  LSDNERIEFLGDAVLELIISQYLYQKYQNLPEGKLTKMRAAIVREDSLAKFAKECQFDQY 100

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWM 938
           +L  +G +     E    + + FEA +GAL+LD GI+      S +++ K  E  F   +
Sbjct: 101 ILLGNGEENSGGRERSALLCDLFEAFLGALYLDQGIETVKYFISEIIFPKIEEGNFSHEV 160

Query: 939 YYPQHPLQEQEPDGD-----RQWVEQSPLLKQLQYLE 970
            +  H  +  +  GD     R   E+ P   ++ Y E
Sbjct: 161 DHKTHLQEVLQHKGDVNIDYRLVDEKGPAHDRIFYTE 197



 Score = 48.5 bits (114), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 6/58 (10%)

Query: 969  LEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            L+   G++F+ + LL + FT  S  Y N    L L  N+R+EFLGD VL+LI S YLY
Sbjct: 9    LKERYGIVFHDVNLLEQAFTHSS--YVNEHRYLKLSDNERIEFLGDAVLELIISQYLY 64


>gi|378550823|ref|ZP_09826039.1| hypothetical protein CCH26_12079 [Citricoccus sp. CH26A]
          Length = 256

 Score = 80.5 bits (197), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/96 (41%), Positives = 59/96 (61%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+ F+ + HL+   PD+ EG LA  RAA+V  + LA +A+ IG+   +L 
Sbjct: 56  NERLEFLGDAVLGFVVTDHLYRTHPDLAEGDLAKMRAAVVSTRALASVARSIGVGASILL 115

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
             G       +    +A+  EAL+GA ++D G++ A
Sbjct: 116 GEGEKRTRGRDKDSILADTLEALIGAAYVDLGLEAA 151



 Score = 43.5 bits (101), Expect = 0.67,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 26/40 (65%)

Query: 983  LARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            LA   T RS  Y +  L +N+RLEFLGD VL  + +D+LY
Sbjct: 37   LALALTHRSYAYEHGGLPTNERLEFLGDAVLGFVVTDHLY 76


>gi|333909022|ref|YP_004482608.1| ribonuclease 3 [Marinomonas posidonica IVIA-Po-181]
 gi|333479028|gb|AEF55689.1| Ribonuclease 3 [Marinomonas posidonica IVIA-Po-181]
          Length = 227

 Score = 80.5 bits (197), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 75/140 (53%), Gaps = 12/140 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ ++ +  LFH FP  +EG L+  RA++V+   LA LA+   L DF+ 
Sbjct: 35  NNERLEFLGDSILNYVIAEDLFHRFPKAKEGELSRLRASLVKGDTLAELAREFQLGDFLK 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS------------VLYKD 929
              G            +A+  E ++GA++LD G+D+  Q   +            V+ KD
Sbjct: 95  LGAGELKSGGFRRDSILADSVEGIIGAMYLDAGMDICRQHILAWYKDRLEATSLKVVTKD 154

Query: 930 NEVRFKQWMYYPQHPLQEQE 949
            + R ++++   +H L + +
Sbjct: 155 AKTRLQEYLQARKHALPQYD 174


>gi|29377554|ref|NP_816708.1| ribonuclease III [Enterococcus faecalis V583]
 gi|255970707|ref|ZP_05421293.1| ribonuclease III [Enterococcus faecalis T1]
 gi|255974283|ref|ZP_05424869.1| ribonuclease III [Enterococcus faecalis T2]
 gi|256618145|ref|ZP_05474991.1| ribonuclease III [Enterococcus faecalis ATCC 4200]
 gi|256761074|ref|ZP_05501654.1| ribonuclease III [Enterococcus faecalis T3]
 gi|256958378|ref|ZP_05562549.1| ribonuclease III [Enterococcus faecalis DS5]
 gi|256960445|ref|ZP_05564616.1| ribonuclease III [Enterococcus faecalis Merz96]
 gi|256962935|ref|ZP_05567106.1| ribonuclease III [Enterococcus faecalis HIP11704]
 gi|257078311|ref|ZP_05572672.1| ribonuclease III [Enterococcus faecalis JH1]
 gi|257080500|ref|ZP_05574861.1| ribonuclease III [Enterococcus faecalis E1Sol]
 gi|257083236|ref|ZP_05577597.1| ribonuclease III [Enterococcus faecalis Fly1]
 gi|257088212|ref|ZP_05582573.1| ribonuclease III [Enterococcus faecalis D6]
 gi|257091337|ref|ZP_05585698.1| ribonuclease III [Enterococcus faecalis CH188]
 gi|257417226|ref|ZP_05594220.1| ribonuclease III [Enterococcus faecalis ARO1/DG]
 gi|257417943|ref|ZP_05594937.1| ribonuclease III [Enterococcus faecalis T11]
 gi|257420449|ref|ZP_05597439.1| ribonuclease III [Enterococcus faecalis X98]
 gi|294780225|ref|ZP_06745597.1| ribonuclease III [Enterococcus faecalis PC1.1]
 gi|300861565|ref|ZP_07107649.1| ribonuclease III [Enterococcus faecalis TUSoD Ef11]
 gi|428768209|ref|YP_007154320.1| ribonuclease III [Enterococcus faecalis str. Symbioflor 1]
 gi|75541427|sp|Q82ZG1.1|RNC_ENTFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|29345021|gb|AAO82778.1| ribonuclease III [Enterococcus faecalis V583]
 gi|255961725|gb|EET94201.1| ribonuclease III [Enterococcus faecalis T1]
 gi|255967155|gb|EET97777.1| ribonuclease III [Enterococcus faecalis T2]
 gi|256597672|gb|EEU16848.1| ribonuclease III [Enterococcus faecalis ATCC 4200]
 gi|256682325|gb|EEU22020.1| ribonuclease III [Enterococcus faecalis T3]
 gi|256948874|gb|EEU65506.1| ribonuclease III [Enterococcus faecalis DS5]
 gi|256950941|gb|EEU67573.1| ribonuclease III [Enterococcus faecalis Merz96]
 gi|256953431|gb|EEU70063.1| ribonuclease III [Enterococcus faecalis HIP11704]
 gi|256986341|gb|EEU73643.1| ribonuclease III [Enterococcus faecalis JH1]
 gi|256988530|gb|EEU75832.1| ribonuclease III [Enterococcus faecalis E1Sol]
 gi|256991266|gb|EEU78568.1| ribonuclease III [Enterococcus faecalis Fly1]
 gi|256996242|gb|EEU83544.1| ribonuclease III [Enterococcus faecalis D6]
 gi|257000149|gb|EEU86669.1| ribonuclease III [Enterococcus faecalis CH188]
 gi|257159054|gb|EEU89014.1| ribonuclease III [Enterococcus faecalis ARO1/DG]
 gi|257159771|gb|EEU89731.1| ribonuclease III [Enterococcus faecalis T11]
 gi|257162273|gb|EEU92233.1| ribonuclease III [Enterococcus faecalis X98]
 gi|294452768|gb|EFG21198.1| ribonuclease III [Enterococcus faecalis PC1.1]
 gi|295114417|emb|CBL33054.1| RNAse III [Enterococcus sp. 7L76]
 gi|300849026|gb|EFK76779.1| ribonuclease III [Enterococcus faecalis TUSoD Ef11]
 gi|427186382|emb|CCO73606.1| ribonuclease III [Enterococcus faecalis str. Symbioflor 1]
          Length = 230

 Score = 80.5 bits (197), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/108 (37%), Positives = 62/108 (57%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           ++ NERLEFLGDAV+E I S +L+  FP++ EG L   RAAIV+   LA  AK    +++
Sbjct: 41  LSDNERLEFLGDAVLELIVSQYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNY 100

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          + + FEA +GAL+LD  +  A +    V++
Sbjct: 101 ILLGKGEEASGGRTRASLLCDLFEAFLGALYLDQKVGAAKKFIEDVIF 148



 Score = 50.4 bits (119), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 6/58 (10%)

Query: 969  LEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            L+   G++F+ + LL + FT  S  Y N    L L  N+RLEFLGD VL+LI S YLY
Sbjct: 9    LKERYGIVFHDVNLLEQAFTHSS--YVNEHRYLKLSDNERLEFLGDAVLELIVSQYLY 64


>gi|37681015|ref|NP_935624.1| ribonuclease III [Vibrio vulnificus YJ016]
 gi|37199765|dbj|BAC95595.1| dsRNA-specific ribonuclease [Vibrio vulnificus YJ016]
          Length = 259

 Score = 80.5 bits (197), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +  GL 
Sbjct: 65  ANSKHNERLEFLGDSILSFVIADELYHRFPKVNEGDMSRMRATLVRGNTLAELGREFGLG 124

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSV 925
           D++    G            +A+  EA++GA++LD  ++V             + +   V
Sbjct: 125 DYLKLGPGELKSGGFRRDSILADAVEAIIGAVYLDSDLEVVRGIVLNWYASRLEAIKPGV 184

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 185 SQKDPKTRLQEFLQGRRKPL 204


>gi|404406077|ref|ZP_10997661.1| ribonuclease III [Alistipes sp. JC136]
          Length = 258

 Score = 80.5 bits (197), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 89/173 (51%), Gaps = 18/173 (10%)

Query: 804 INIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQ 863
           + ++ K    V  +    +NERLE+LGDAV+E +TS +LF  +PD +EG +   R+ IV 
Sbjct: 34  LALIHKSASLVLEDGRSINNERLEYLGDAVIEAVTSDYLFIEYPDRDEGFMTQLRSKIVS 93

Query: 864 NQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFS 923
            Q L  LA ++GL+  ++   G+ +      KH   + FEA+MGA++LD G +  +++  
Sbjct: 94  RQSLNALAVKLGLDVHVISNGGAGIAQ----KHIYGDAFEAMMGAVYLDQGYEFVNRLLI 149

Query: 924 SVLY-------------KDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLL 963
           + +Y              D + R  +W    +H + E   + D+++    P+ 
Sbjct: 150 NDIYLRFLNLEELTESETDFKSRLIEWSQKHRHRI-EFRTEHDKEYASNHPVF 201


>gi|407003127|gb|EKE19747.1| hypothetical protein ACD_8C00115G0008 [uncultured bacterium]
          Length = 227

 Score = 80.5 bits (197), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 46/136 (33%), Positives = 80/136 (58%), Gaps = 2/136 (1%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I HNERLEFLGDAV+E I + HL++ + +  EG L ++R+A+V  + LA +++ +G+E  
Sbjct: 37  IEHNERLEFLGDAVLELIITEHLYNNYKN-PEGELTSWRSALVNGEMLASVSQDLGVEKH 95

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ-VFSSVLYKDNEVRFKQWM 938
           +L + G         ++ +AN  EA++GA +LD G D   + V  +V  +  E+  K+  
Sbjct: 96  LLMSRGEAKDKGRARQYLLANALEAIIGASYLDQGYDTTKKFVLDNVAVRLKEILEKKLY 155

Query: 939 YYPQHPLQEQEPDGDR 954
             P+   QE+  + ++
Sbjct: 156 LDPKSFFQEKAQENNK 171



 Score = 45.4 bits (106), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 966  LQYLEYSSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            ++ L    GV F++I LL +  T RS    N  L +  N+RLEFLGD VL+LI +++LY
Sbjct: 2    IESLAKKIGVKFDNIELLRQAVTHRSYLNENRDLAIEHNERLEFLGDAVLELIITEHLY 60


>gi|373467600|ref|ZP_09558894.1| ribonuclease III [Haemophilus sp. oral taxon 851 str. F0397]
 gi|417840127|ref|ZP_12486280.1| Ribonuclease 3 [Haemophilus haemolyticus M19107]
 gi|341950132|gb|EGT76724.1| Ribonuclease 3 [Haemophilus haemolyticus M19107]
 gi|371758321|gb|EHO47094.1| ribonuclease III [Haemophilus sp. oral taxon 851 str. F0397]
          Length = 227

 Score = 80.5 bits (197), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 13/162 (8%)

Query: 797 KRGINTLINIMSKLGRKVATESNIT-HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLA 855
           +R I    N ++ L + +   S  T HNERLEFLGD+++ F  +  L+H FP   EG L+
Sbjct: 8   ERKIGYRFNDIALLKQALTHRSAATQHNERLEFLGDSILNFTIAEALYHQFPRCNEGELS 67

Query: 856 TYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGI 915
             RA +V+   LA LA++  L D+M    G         +  +A+C EA++GA+ LD G+
Sbjct: 68  RMRATLVREPTLAILARQFELGDYMSLGSGELKSGGFRRESILADCVEAIIGAMSLDQGL 127

Query: 916 DVADQV----FSSVLY--------KDNEVRFKQWMYYPQHPL 945
            V  QV    +  +L         KD + R ++++     PL
Sbjct: 128 AVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPL 169


>gi|73662845|ref|YP_301626.1| ribonuclease III [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|90101648|sp|Q49X17.1|RNC_STAS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|72495360|dbj|BAE18681.1| dsRNA-specific ribonuclease RNase III [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 244

 Score = 80.5 bits (197), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 60/108 (55%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   S +LF  +P++ EG L   RA IV    L   A +I L D 
Sbjct: 52  LDHNERLEFLGDAVLELTVSRYLFDKYPELPEGNLTKMRATIVCEPSLVIFANKIQLNDL 111

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          +++ FEA +GAL+LD G++   Q    +++
Sbjct: 112 ILLGKGEEKTGGRTRPSLVSDAFEAFVGALYLDQGLEAVWQFSEQIIF 159


>gi|59712694|ref|YP_205470.1| ribonuclease III [Vibrio fischeri ES114]
 gi|197335272|ref|YP_002156886.1| ribonuclease III [Vibrio fischeri MJ11]
 gi|423686829|ref|ZP_17661637.1| ribonuclease III [Vibrio fischeri SR5]
 gi|75431522|sp|Q5E314.1|RNC_VIBF1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|59480795|gb|AAW86582.1| RNase III [Vibrio fischeri ES114]
 gi|197316762|gb|ACH66209.1| ribonuclease III [Vibrio fischeri MJ11]
 gi|371494897|gb|EHN70495.1| ribonuclease III [Vibrio fischeri SR5]
          Length = 223

 Score = 80.5 bits (197), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N THNERLEFLGD+++ F+ +  L+H FP ++EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANGTHNERLEFLGDSILSFVVADDLYHRFPKVDEGDMSRMRATLVRGHTLAELGREFQLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS------------V 925
           D++    G            +A+  EA++GA++LD   +    +  S            V
Sbjct: 91  DYLYLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDTETVRGIILSWYNTRLESIEPGV 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEYLQGRRKPL 170


>gi|71907657|ref|YP_285244.1| ribonuclease III [Dechloromonas aromatica RCB]
 gi|90101622|sp|Q47EF7.1|RNC_DECAR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71847278|gb|AAZ46774.1| RNAse III [Dechloromonas aromatica RCB]
          Length = 222

 Score = 80.1 bits (196), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/129 (33%), Positives = 72/129 (55%), Gaps = 12/129 (9%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD V++F+ +  L+H FPD+ EG L+  RA +V+ + L  LA  + +  F+ 
Sbjct: 33  NNERLEFLGDGVLDFVIAASLYHRFPDLPEGDLSRLRANLVRQETLHRLALELNIGAFLR 92

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGID----VADQVFSSVL--------YKD 929
              G       +    +A+  EAL GA++LD G +    V +++F+ +L         KD
Sbjct: 93  LGEGELKSGGAQRPSILADALEALFGAIYLDAGFEASRAVIEKLFAPLLDDLKPGQFQKD 152

Query: 930 NEVRFKQWM 938
            + R ++W+
Sbjct: 153 AKTRLQEWL 161


>gi|421452638|ref|ZP_15901999.1| Ribonuclease III [Streptococcus salivarius K12]
 gi|400183069|gb|EJO17331.1| Ribonuclease III [Streptococcus salivarius K12]
          Length = 247

 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 64/108 (59%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDA ++ + S++L+  +P+  EG ++  R+ IV+ + LA   K  G E 
Sbjct: 57  NISHNERLEFLGDAALQLVISVYLYKRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQ 116

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           ++    G +     E    + + +EA +GAL+LD G+   ++  + V+
Sbjct: 117 YIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGLPAVEKFLNQVM 164



 Score = 47.4 bits (111), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 7/70 (10%)

Query: 958  EQSPLLKQL-QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTV 1012
            ++   + QL Q LE   G++F+   LL   FT  S  Y N    L +  N+RLEFLGD  
Sbjct: 14   KKGSFMNQLEQKLEQDFGIVFSQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAA 71

Query: 1013 LQLITSDYLY 1022
            LQL+ S YLY
Sbjct: 72   LQLVISVYLY 81


>gi|295696065|ref|YP_003589303.1| ribonuclease III [Kyrpidia tusciae DSM 2912]
 gi|295411667|gb|ADG06159.1| ribonuclease III [Kyrpidia tusciae DSM 2912]
          Length = 231

 Score = 80.1 bits (196), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/109 (36%), Positives = 62/109 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           ++  NERLEFLGDAV+E + S  LF  +P   EG L   RAAIV    L   A  +GL+ 
Sbjct: 38  DVEDNERLEFLGDAVLELLVSEFLFRAYPRFPEGELTRMRAAIVCEPSLVRFATALGLDQ 97

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           ++    G ++         +A+ +EAL+GA+FLD G++ A +    +++
Sbjct: 98  YIRLGRGEEMSGGRRRPSLLADVYEALIGAIFLDQGLEAAREFLQRMMF 146



 Score = 42.4 bits (98), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 5/57 (8%)

Query: 969  LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS---NQRLEFLGDTVLQLITSDYLY 1022
            LE   G+ F +  LL + FT  S  Y N   G    N+RLEFLGD VL+L+ S++L+
Sbjct: 8    LEARLGITFRNASLLRQAFTHSS--YRNEHRGDVEDNERLEFLGDAVLELLVSEFLF 62


>gi|269215480|ref|ZP_06159334.1| ribonuclease III [Slackia exigua ATCC 700122]
 gi|269130967|gb|EEZ62042.1| ribonuclease III [Slackia exigua ATCC 700122]
          Length = 312

 Score = 80.1 bits (196), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 16/152 (10%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           ERLEFLGD+++  I +   FH +P+I+EGGL   + A+V    L+ +A ++G  D +++ 
Sbjct: 48  ERLEFLGDSILGAIVANEAFHAYPEIDEGGLTRIKVALVSGSSLSDVAAKLGFADIIVFG 107

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQH 943
                     L  A+ N +EAL+ ALFLD G+D A       L    ++   +    P+ 
Sbjct: 108 SSERGTGRRGLHSALENVYEALVAALFLDKGMDGARDFVRRTLIPRMDIEMAREPENPKS 167

Query: 944 PLQE----------------QEPDGDRQWVEQ 959
            LQE                Q P  DR +V Q
Sbjct: 168 ALQEKLQEEGITPTYKLVETQGPPHDRTFVSQ 199


>gi|251772101|gb|EES52671.1| Ribonuclease III [Leptospirillum ferrodiazotrophum]
          Length = 254

 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 58/98 (59%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGD V+  + + +L  ++PD  EG L+  +  IV    LA +A+ IGL  ++L 
Sbjct: 50  NERLEFLGDTVLGLVVAEYLMRLWPDSPEGVLSKLKGRIVSEPSLAQIARNIGLGRYLLI 109

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ 920
             G ++    E    +++  EA++ A++ DGG+D A Q
Sbjct: 110 GRGEEMTQGREKNSILSDALEAVIAAIYQDGGLDAARQ 147


>gi|406959925|gb|EKD87146.1| hypothetical protein ACD_37C00027G0006 [uncultured bacterium]
          Length = 229

 Score = 80.1 bits (196), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 1/129 (0%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           IT NERLEFLGD+++ FI S +L+  F + +EG L   R+ +V  + LA  A+ + L   
Sbjct: 39  ITSNERLEFLGDSIISFIVSSYLYDNFKNYDEGRLTNLRSLLVNTKSLADCARELDLGSR 98

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWM 938
           +L + G +       +  +A+ FEAL+GALFLD G+    ++   VL  K      K  +
Sbjct: 99  LLLSKGEEESGGRNNQSLLADVFEALVGALFLDSGVQAVKKLLEEVLLPKTQSFVEKNML 158

Query: 939 YYPQHPLQE 947
             P+  LQE
Sbjct: 159 KDPKSLLQE 167


>gi|406984879|gb|EKE05786.1| hypothetical protein ACD_19C00176G0008 [uncultured bacterium]
          Length = 216

 Score = 80.1 bits (196), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 2/139 (1%)

Query: 812 RKVATESNITH--NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAH 869
           R    E++  H  NERLEFLGDAV+EF+ S  +++ FP  EEG L   RA +V  ++LA 
Sbjct: 17  RSWVNENSDNHGTNERLEFLGDAVLEFLVSTEIYNKFPKEEEGYLTALRANLVNTKNLAE 76

Query: 870 LAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 929
           +AK++ + + +  + G +          +A+  EA++GALFLD GI+ +++     +  D
Sbjct: 77  VAKKLNIGEMIKLSKGEEDGGGRTNSSLLADTVEAIIGALFLDQGIEASEKFIKENILVD 136

Query: 930 NEVRFKQWMYYPQHPLQEQ 948
            + +    +  P+  LQE+
Sbjct: 137 TDKKAILPLKDPKSLLQEK 155


>gi|418922815|ref|ZP_13476732.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1233]
 gi|377736138|gb|EHT60168.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1233]
          Length = 243

 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 60/108 (55%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   S +LF   P++ EG L   RA IV    L   A +IG  + 
Sbjct: 52  LDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGFNEM 111

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          +++ FEA +GAL+LD G+D+  +    V++
Sbjct: 112 ILLGKGEEKTGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIF 159


>gi|56417113|ref|YP_154187.1| ribonuclease III [Anaplasma marginale str. St. Maries]
 gi|81358903|sp|Q5P9U8.1|RNC_ANAMM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56388345|gb|AAV86932.1| ribonuclease III [Anaplasma marginale str. St. Maries]
          Length = 232

 Score = 80.1 bits (196), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 10/136 (7%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           ERLEFLGDAV+    S  L+ +FPD +EG L   R A+V+   +  +A+ IGL + +L +
Sbjct: 45  ERLEFLGDAVLSMTVSEMLYRLFPDDDEGCLTRKRTALVRGSEVVEIARSIGLGELILMS 104

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQH 943
            G   C   +    + N  EAL+GA+++DGG     + + S ++K    R +   Y P  
Sbjct: 105 GGERTCGGSDNPGTLENALEALIGAMYMDGG----PEAYRSFIHKHWLARAQHMSYTP-- 158

Query: 944 PLQEQEPDGDRQ-WVE 958
               Q+P    Q WV+
Sbjct: 159 ---PQDPKTALQEWVQ 171


>gi|386391878|ref|ZP_10076659.1| ribonuclease III [Desulfovibrio sp. U5L]
 gi|385732756|gb|EIG52954.1| ribonuclease III [Desulfovibrio sp. U5L]
          Length = 239

 Score = 80.1 bits (196), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 42/97 (43%), Positives = 58/97 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDAV+E   S  LF  FP+  EG L   R+ +V    LA +A+R+ LE+ +L
Sbjct: 41  HNERLEFLGDAVLELCVSEELFARFPEAPEGELTLLRSQLVNEGSLAAMARRLSLEEHVL 100

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
              G +          +++ FEA++GA+FLDGG   A
Sbjct: 101 LGKGEENQGGRSRPALLSDAFEAVIGAIFLDGGYAAA 137


>gi|222475478|ref|YP_002563895.1| ribonuclease III [Anaplasma marginale str. Florida]
 gi|254995287|ref|ZP_05277477.1| ribonuclease III [Anaplasma marginale str. Mississippi]
 gi|255003466|ref|ZP_05278430.1| ribonuclease III [Anaplasma marginale str. Puerto Rico]
 gi|254807234|sp|B9KGT5.1|RNC_ANAMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|222419616|gb|ACM49639.1| ribonuclease III (rnc) [Anaplasma marginale str. Florida]
          Length = 232

 Score = 80.1 bits (196), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 10/136 (7%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           ERLEFLGDAV+    S  L+ +FPD +EG L   R A+V+   +  +A+ IGL + +L +
Sbjct: 45  ERLEFLGDAVLSMTVSEMLYRLFPDDDEGCLTRKRTALVRGSEVVEIARSIGLGELILMS 104

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQH 943
            G   C   +    + N  EAL+GA+++DGG     + + S ++K    R +   Y P  
Sbjct: 105 GGERTCGGSDNPGTLENALEALIGAMYMDGG----PEAYRSFIHKHWLARAQHMSYTP-- 158

Query: 944 PLQEQEPDGDRQ-WVE 958
               Q+P    Q WV+
Sbjct: 159 ---PQDPKTALQEWVQ 171


>gi|443311373|ref|ZP_21041002.1| ribonuclease III [Synechocystis sp. PCC 7509]
 gi|442778570|gb|ELR88834.1| ribonuclease III [Synechocystis sp. PCC 7509]
          Length = 221

 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 65/108 (60%), Gaps = 6/108 (5%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDA++  + +  L+H +PD++EG L   R+ +V  Q LA  A+++ +   ML
Sbjct: 32  NNERLEFLGDALLGLLIAERLYHKYPDMDEGQLTKLRSTLVDEQQLAKFARKLNIGGQML 91

Query: 882 YAHGSDL---CHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
             +G+ L   CH   L   +++ FEA++GA FLD GI        S++
Sbjct: 92  LGNGAKLDGGCHNSNL---LSSTFEAVIGAYFLDSGIQATSFFVESLV 136


>gi|224476345|ref|YP_002633951.1| ribonuclease III [Staphylococcus carnosus subsp. carnosus TM300]
 gi|254807899|sp|B9DPJ2.1|RNC_STACT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|222420952|emb|CAL27766.1| putative ribonuclease III [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 242

 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 60/108 (55%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   S +LF  +P++ EG L   RA IV    L   A +I L + 
Sbjct: 52  LAHNERLEFLGDAVLELTVSRYLFDKYPELPEGNLTKMRATIVCEPSLVIFANKIQLNEL 111

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          +++ FEA +GAL+LD G+D   Q    V++
Sbjct: 112 ILLGKGEEKTGGRTRPSLVSDAFEAFVGALYLDQGLDAVWQFSEEVIF 159


>gi|223937314|ref|ZP_03629220.1| Ribonuclease III [bacterium Ellin514]
 gi|223894099|gb|EEF60554.1| Ribonuclease III [bacterium Ellin514]
          Length = 231

 Score = 80.1 bits (196), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 54/188 (28%)

Query: 734 LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
           LN L+  + Y F+   LLQLALTHPS                               H Q
Sbjct: 4   LNNLQTALGYAFRKIELLQLALTHPSV-----------------------------AHEQ 34

Query: 794 NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
            T                        + HN+RLEFLGDAV++ + +  L+  FPD  EG 
Sbjct: 35  RT-----------------------PVQHNQRLEFLGDAVLQLVLTHELYSKFPDFGEGP 71

Query: 854 LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELK-HAMANCFEALMGALFLD 912
           L   RA +V  + LA   + + L   ++ + G +  H   L+  A+A+ FEAL+GA+FLD
Sbjct: 72  LTKARAKLVNRRALAEQGRALNLGAHLILSRGEE-AHGGRLRPSALADTFEALLGAIFLD 130

Query: 913 GGIDVADQ 920
           GG +  ++
Sbjct: 131 GGFEAVEK 138



 Score = 42.0 bits (97), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT-LGSNQRLEFLGDTVLQLITSDYL 1021
            +  L  L+ + G  F  I LL    T  S+ +   T +  NQRLEFLGD VLQL+ +  L
Sbjct: 1    MPDLNNLQTALGYAFRKIELLQLALTHPSVAHEQRTPVQHNQRLEFLGDAVLQLVLTHEL 60

Query: 1022 Y 1022
            Y
Sbjct: 61   Y 61


>gi|350532418|ref|ZP_08911359.1| ribonuclease III [Vibrio rotiferianus DAT722]
          Length = 225

 Score = 80.1 bits (196), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANSKHNERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGHTLAELGREFDLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS------------V 925
           D++    G            +A+  EA++GA++LD  I+V   +  S            V
Sbjct: 91  DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEVVRGIVLSWYNSRLEAIKPGV 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|378696092|ref|YP_005178050.1| RNase III [Haemophilus influenzae 10810]
 gi|301168615|emb|CBW28205.1| RNase III [Haemophilus influenzae 10810]
          Length = 227

 Score = 80.1 bits (196), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 13/162 (8%)

Query: 797 KRGINTLINIMSKLGRKVATESNIT-HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLA 855
           +R I    N ++ L + +   S  T HNERLEFLGD+++ F  +  L+H FP   EG L+
Sbjct: 8   ERKIGYCFNDITLLKQALTHRSAATQHNERLEFLGDSILNFTIAEALYHQFPRCNEGELS 67

Query: 856 TYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGI 915
             RA +V+   LA LA++  L D+M    G         +  +A+C EA++GA+ LD G+
Sbjct: 68  RMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSLDQGL 127

Query: 916 DVADQV----FSSVLY--------KDNEVRFKQWMYYPQHPL 945
            V  QV    +  +L         KD + R ++++     PL
Sbjct: 128 AVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPL 169


>gi|254490771|ref|ZP_05103954.1| ribonuclease III [Methylophaga thiooxidans DMS010]
 gi|224463943|gb|EEF80209.1| ribonuclease III [Methylophaga thiooxydans DMS010]
          Length = 227

 Score = 79.7 bits (195), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 76/136 (55%), Gaps = 12/136 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLE+LGDA++ F+ +  LF+ FP ++EG L+  RA++V+ + LA LA+ + L D ++
Sbjct: 36  NNERLEYLGDAILSFVIAEELFNRFPQVKEGKLSRLRASLVKGETLAELARELKLGDVLI 95

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLYKD 929
              G         +  +A+  EA++GAL+LDGG++              D +  +   KD
Sbjct: 96  LGPGELKSGGFRRESILADAVEAILGALYLDGGLESVKALILRLYQERLDNIDVTETVKD 155

Query: 930 NEVRFKQWMYYPQHPL 945
            + R ++ +   + PL
Sbjct: 156 PKTRLQELLQSRKQPL 171


>gi|145635204|ref|ZP_01790908.1| ribonuclease III [Haemophilus influenzae PittAA]
 gi|229845360|ref|ZP_04465491.1| ribonuclease III [Haemophilus influenzae 6P18H1]
 gi|145267483|gb|EDK07483.1| ribonuclease III [Haemophilus influenzae PittAA]
 gi|229811668|gb|EEP47366.1| ribonuclease III [Haemophilus influenzae 6P18H1]
          Length = 227

 Score = 79.7 bits (195), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 13/162 (8%)

Query: 797 KRGINTLINIMSKLGRKVATESNIT-HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLA 855
           +R I    N ++ L + +   S  T HNERLEFLGD+++ F  +  L+H FP   EG L+
Sbjct: 8   ERKIGYCFNNIALLKQALTHRSAATQHNERLEFLGDSILNFTIAEALYHQFPRCNEGELS 67

Query: 856 TYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGI 915
             RA +V+   LA LA++  L D+M    G         +  +A+C EA++GA+ LD G+
Sbjct: 68  RMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSLDQGL 127

Query: 916 DVADQV----FSSVLY--------KDNEVRFKQWMYYPQHPL 945
            V  QV    +  +L         KD + R ++++     PL
Sbjct: 128 AVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPL 169



 Score = 41.2 bits (95), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            +  L  LE   G  FN+I LL +  T RS    +     N+RLEFLGD++L    ++ LY
Sbjct: 1    MNHLDRLERKIGYCFNNIALLKQALTHRSAATQH-----NERLEFLGDSILNFTIAEALY 55


>gi|68248565|ref|YP_247677.1| ribonuclease III [Haemophilus influenzae 86-028NP]
 gi|145629132|ref|ZP_01784931.1| ribonuclease III [Haemophilus influenzae 22.1-21]
 gi|145633429|ref|ZP_01789159.1| ribonuclease III [Haemophilus influenzae 3655]
 gi|145636782|ref|ZP_01792448.1| ribonuclease III [Haemophilus influenzae PittHH]
 gi|145639697|ref|ZP_01795300.1| ribonuclease III [Haemophilus influenzae PittII]
 gi|148825705|ref|YP_001290458.1| ribonuclease III [Haemophilus influenzae PittEE]
 gi|229846933|ref|ZP_04467039.1| ribonuclease III [Haemophilus influenzae 7P49H1]
 gi|260582072|ref|ZP_05849867.1| ribonuclease III [Haemophilus influenzae NT127]
 gi|81337008|sp|Q4QPN0.1|RNC_HAEI8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043319|sp|A5UBC4.1|RNC_HAEIE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|68056764|gb|AAX87017.1| ribonuclease III [Haemophilus influenzae 86-028NP]
 gi|144978635|gb|EDJ88358.1| ribonuclease III [Haemophilus influenzae 22.1-21]
 gi|144985992|gb|EDJ92594.1| ribonuclease III [Haemophilus influenzae 3655]
 gi|145270080|gb|EDK10017.1| ribonuclease III [Haemophilus influenzae PittHH]
 gi|145271254|gb|EDK11168.1| ribonuclease III [Haemophilus influenzae PittII]
 gi|148715865|gb|ABQ98075.1| ribonuclease III [Haemophilus influenzae PittEE]
 gi|229810017|gb|EEP45737.1| ribonuclease III [Haemophilus influenzae 7P49H1]
 gi|260094962|gb|EEW78855.1| ribonuclease III [Haemophilus influenzae NT127]
 gi|309750667|gb|ADO80651.1| RNase III, dsRNA [Haemophilus influenzae R2866]
          Length = 227

 Score = 79.7 bits (195), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 13/162 (8%)

Query: 797 KRGINTLINIMSKLGRKVATESNIT-HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLA 855
           +R I    N ++ L + +   S  T HNERLEFLGD+++ F  +  L+H FP   EG L+
Sbjct: 8   ERKIGYCFNDIALLKQALTHRSAATQHNERLEFLGDSILNFTIAEALYHQFPRCNEGELS 67

Query: 856 TYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGI 915
             RA +V+   LA LA++  L D+M    G         +  +A+C EA++GA+ LD G+
Sbjct: 68  RMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSLDQGL 127

Query: 916 DVADQV----FSSVLY--------KDNEVRFKQWMYYPQHPL 945
            V  QV    +  +L         KD + R ++++     PL
Sbjct: 128 AVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPL 169


>gi|343503692|ref|ZP_08741501.1| ribonuclease III [Vibrio ichthyoenteri ATCC 700023]
 gi|343514880|ref|ZP_08751945.1| ribonuclease III [Vibrio sp. N418]
 gi|342799246|gb|EGU34821.1| ribonuclease III [Vibrio sp. N418]
 gi|342814284|gb|EGU49231.1| ribonuclease III [Vibrio ichthyoenteri ATCC 700023]
          Length = 225

 Score = 79.7 bits (195), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANGKHNERLEFLGDSILSFVIADELYHRFPKVNEGDMSRMRATLVRGNTLAELGREFVLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSV 925
           D++    G            +A+  EA++GA++LD  I+V             D++    
Sbjct: 91  DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEVVRGIVLSWYQTRLDEIKPGA 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|357403940|ref|YP_004915864.1| ribonuclease 3 [Methylomicrobium alcaliphilum 20Z]
 gi|351716605|emb|CCE22267.1| Ribonuclease 3 [Methylomicrobium alcaliphilum 20Z]
          Length = 227

 Score = 79.7 bits (195), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 71/127 (55%), Gaps = 1/127 (0%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ F+ +  L  +FP+  EG L+  RA++V    LA LA+++ + D+++
Sbjct: 35  NNERLEFLGDSILGFVVAEKLHKMFPEASEGVLSRLRASLVNQGALADLARKLNIGDYLI 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ-VFSSVLYKDNEVRFKQWMYY 940
              G            +++  EA++GALF D GI++  Q V   +  K + +    W   
Sbjct: 95  LGSGELKSGGFRRDSILSDAVEAIIGALFKDQGIEICRQWVLDMLQDKLDSLSLDNWQKD 154

Query: 941 PQHPLQE 947
           P+  LQE
Sbjct: 155 PKTQLQE 161


>gi|357632354|ref|ZP_09130232.1| ribonuclease III [Desulfovibrio sp. FW1012B]
 gi|357580908|gb|EHJ46241.1| ribonuclease III [Desulfovibrio sp. FW1012B]
          Length = 239

 Score = 79.7 bits (195), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/97 (43%), Positives = 58/97 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDAV+E   S  LF  FP+  EG L   R+ +V    LA +A+R+ LE+ +L
Sbjct: 41  HNERLEFLGDAVLELCVSEELFVRFPEAPEGELTLLRSQLVNEGSLAAMARRLSLEEHVL 100

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
              G +          +++ FEA++GA+FLDGG   A
Sbjct: 101 LGKGEENQGGRTRPALLSDAFEAVIGAIFLDGGYAAA 137


>gi|433446059|ref|ZP_20410190.1| ribonuclease III [Anoxybacillus flavithermus TNO-09.006]
 gi|432000804|gb|ELK21696.1| ribonuclease III [Anoxybacillus flavithermus TNO-09.006]
          Length = 231

 Score = 79.7 bits (195), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 50/126 (39%), Positives = 64/126 (50%), Gaps = 2/126 (1%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  FP + EG L   RAAIV    L   A  +   D +L 
Sbjct: 41  NERLEFLGDAVLELTVSQYLFEQFPQMSEGELTKLRAAIVCEPSLVTFAHALSFGDLVLL 100

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G +L         +A+ FEA +GAL+LD G++   Q     ++ K  E  F   M Y 
Sbjct: 101 GKGEELTGGRMRPSLLADVFEAFIGALYLDQGMEAVVQFLEKTIFPKIREGAFSHVMDYK 160

Query: 942 QHPLQE 947
              LQE
Sbjct: 161 SQ-LQE 165


>gi|421872840|ref|ZP_16304457.1| ribonuclease III [Brevibacillus laterosporus GI-9]
 gi|372458255|emb|CCF14006.1| ribonuclease III [Brevibacillus laterosporus GI-9]
          Length = 229

 Score = 79.7 bits (195), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/108 (38%), Positives = 60/108 (55%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I+ NERLEFLGDAV+E   S  L+ +FP + EG +   RAAIV    L   A+ +   + 
Sbjct: 38  ISDNERLEFLGDAVLELTVSQFLYKMFPKMSEGEMTKLRAAIVCEPSLVKFAELLQFGEL 97

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +L    +    +A+ FEA +GAL+LD G+D   Q     +Y
Sbjct: 98  VLLGKGEELTGGRQRPALLADVFEAFVGALYLDQGLDAVFQFLEKYVY 145



 Score = 41.2 bits (95), Expect = 3.2,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 6/58 (10%)

Query: 969  LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITSDYLY 1022
            L+   G++F    L+ + FT  S  Y N   G     N+RLEFLGD VL+L  S +LY
Sbjct: 6    LQEKIGIVFTDESLMRQAFTHSS--YVNEQRGKRISDNERLEFLGDAVLELTVSQFLY 61


>gi|418576384|ref|ZP_13140530.1| dsRNA-specific ribonuclease RNase III [Staphylococcus saprophyticus
           subsp. saprophyticus KACC 16562]
 gi|379325446|gb|EHY92578.1| dsRNA-specific ribonuclease RNase III [Staphylococcus saprophyticus
           subsp. saprophyticus KACC 16562]
          Length = 236

 Score = 79.7 bits (195), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 60/108 (55%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   S +LF  +P++ EG L   RA IV    L   A +I L D 
Sbjct: 44  LDHNERLEFLGDAVLELTVSRYLFDKYPELPEGNLTKMRATIVCEPSLVIFANKIQLNDL 103

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          +++ FEA +GAL+LD G++   Q    +++
Sbjct: 104 ILLGKGEEKTGGRTRPSLVSDAFEAFVGALYLDQGLEAVWQFSEQIIF 151


>gi|344344636|ref|ZP_08775497.1| Ribonuclease 3 [Marichromatium purpuratum 984]
 gi|343803800|gb|EGV21705.1| Ribonuclease 3 [Marichromatium purpuratum 984]
          Length = 225

 Score = 79.7 bits (195), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 19/156 (12%)

Query: 809 KLGRKVATESNITH-------NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAI 861
           +  R    E  +TH       NERLEFLGDA++  + +  L H FP+  EG L+  RA++
Sbjct: 15  EFARPELLEQALTHRSVGPNNNERLEFLGDALIGLLIAEALGHRFPEAAEGTLSRLRASL 74

Query: 862 VQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           V+ + LA LA+ I L D+M    G            +A+  EA++GA++LDGG  VA+ V
Sbjct: 75  VKRESLAKLARGIELGDYMRLGAGELRTGGHARDSILADALEAVLGAVYLDGGFAVANTV 134

Query: 922 FSSVLY------------KDNEVRFKQWMYYPQHPL 945
            + +              KD + R ++++   + PL
Sbjct: 135 VAKLFAERLEQTSIDRSGKDPKTRLQEFLQARKRPL 170


>gi|406886530|gb|EKD33543.1| ribonuclease III [uncultured bacterium]
          Length = 230

 Score = 79.7 bits (195), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 88/158 (55%), Gaps = 20/158 (12%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           ++ HNERLEFLGDAV+E + + +LF  + +  EG L  +RAA+V  + LA +A+ IG+E+
Sbjct: 39  SLGHNERLEFLGDAVLELVVTENLFGNYTN-PEGELTNWRAALVNAEMLAKIAQEIGIEE 97

Query: 879 FMLYAHG-SDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ------------VFSSV 925
           F+  + G +        K+ +AN  EA++GA++LD G + + +            +    
Sbjct: 98  FLYLSKGEAKDAKSKARKYILANAMEAVIGAVYLDKGWESSKEFIGKFVLSRLAHILEHK 157

Query: 926 LYKDNEVRFKQWM-----YYPQHP-LQEQEPDGDRQWV 957
           LY D + RF++         P +  ++E  PD D+++V
Sbjct: 158 LYIDPKSRFQEASQERLGITPSYKVIEETGPDHDKKFV 195


>gi|255004592|ref|ZP_05279393.1| ribonuclease III [Anaplasma marginale str. Virginia]
          Length = 232

 Score = 79.7 bits (195), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 10/136 (7%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           ERLEFLGDAV+    S  L+ +FPD +EG L   R A+V+   +  +A+ IGL + +L +
Sbjct: 45  ERLEFLGDAVLSMTISEMLYRLFPDDDEGCLTRKRTALVRGSEVVEIARSIGLGELILMS 104

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQH 943
            G   C   +    + N  EAL+GA+++DGG     + + S ++K    R +   Y P  
Sbjct: 105 GGERTCGGSDNPGTLENALEALIGAMYMDGG----PEAYRSFIHKHWLARAQHMSYTPP- 159

Query: 944 PLQEQEPDGDRQ-WVE 958
               Q+P    Q WV+
Sbjct: 160 ----QDPKTALQEWVQ 171


>gi|427722715|ref|YP_007069992.1| RNAse III [Leptolyngbya sp. PCC 7376]
 gi|427354435|gb|AFY37158.1| RNAse III [Leptolyngbya sp. PCC 7376]
          Length = 258

 Score = 79.7 bits (195), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 62/97 (63%), Gaps = 1/97 (1%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQH-LAHLAKRIGLEDFML 881
           NERLEFLGDAV++F+    L+  FP+++EG L+  RA +  N+H LA  A  +GL+  + 
Sbjct: 33  NERLEFLGDAVLKFVMGKLLYEQFPELQEGELSRLRAGLENNRHQLATFAMDLGLDSLLR 92

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
              G++     +    +++ FEA++GA FLD GID+A
Sbjct: 93  LGKGTENIGARQNPEILSDAFEAIVGAYFLDAGIDLA 129


>gi|406992432|gb|EKE11799.1| hypothetical protein ACD_15C00026G0018 [uncultured bacterium]
          Length = 229

 Score = 79.7 bits (195), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 45/136 (33%), Positives = 78/136 (57%), Gaps = 5/136 (3%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E + +  L+  +P+  EG L  +RAA+V  + LA ++ ++G+E+F
Sbjct: 37  LDHNERLEFLGDAVLELVVTEFLYENYPN-PEGELTNWRAALVNGEMLAKISGKLGVEEF 95

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLD----GGIDVADQVFSSVLYKDNEVRFK 935
           ++ + G         ++ +AN FEA+ GA++LD    G     D +  +V+ +  E+   
Sbjct: 96  LMMSRGETKDTGKARQYLLANAFEAITGAIYLDQKESGYKAAKDFIMKNVIVELPEIIEN 155

Query: 936 QWMYYPQHPLQEQEPD 951
           +    P+   QE+  D
Sbjct: 156 KSYMDPKSRFQEEAQD 171



 Score = 45.1 bits (105), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 2/51 (3%)

Query: 974  GVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            G+ FN+I +L +  T RS    + +  L  N+RLEFLGD VL+L+ +++LY
Sbjct: 10   GIKFNNIDILQQAVTHRSYLNEHRDYKLDHNERLEFLGDAVLELVVTEFLY 60


>gi|339009341|ref|ZP_08641913.1| ribonuclease 3 [Brevibacillus laterosporus LMG 15441]
 gi|338773819|gb|EGP33350.1| ribonuclease 3 [Brevibacillus laterosporus LMG 15441]
          Length = 239

 Score = 79.7 bits (195), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 42/108 (38%), Positives = 60/108 (55%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I+ NERLEFLGDAV+E   S  L+ +FP + EG +   RAAIV    L   A+ +   + 
Sbjct: 48  ISDNERLEFLGDAVLELTVSQFLYKMFPKMSEGEMTKLRAAIVCEPSLVKFAELLQFGEL 107

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +L    +    +A+ FEA +GAL+LD G+D   Q     +Y
Sbjct: 108 VLLGKGEELTGGRQRPALLADVFEAFVGALYLDQGLDAVFQFLEKYVY 155



 Score = 40.8 bits (94), Expect = 3.5,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 6/58 (10%)

Query: 969  LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITSDYLY 1022
            L+   G++F    L+ + FT  S  Y N   G     N+RLEFLGD VL+L  S +LY
Sbjct: 16   LQEKIGIVFTDESLMRQAFTHSS--YVNEQRGKRISDNERLEFLGDAVLELTVSQFLY 71


>gi|160892686|ref|ZP_02073476.1| hypothetical protein CLOL250_00216 [Clostridium sp. L2-50]
 gi|156865727|gb|EDO59158.1| ribonuclease III [Clostridium sp. L2-50]
          Length = 230

 Score = 79.7 bits (195), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 63/219 (28%), Positives = 92/219 (42%), Gaps = 57/219 (26%)

Query: 729 RFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDR 788
           RFH     +ED I Y F++  LL  ALTH SY                            
Sbjct: 5   RFHN----IEDIIGYTFRDLDLLVTALTHKSY---------------------------- 32

Query: 789 RIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPD 848
                   +R IN                  +   ER EFLGDA++EF+ S +L+  +P+
Sbjct: 33  ------ANERKIN-----------------KVESYERSEFLGDAILEFVVSEYLYQNYPE 69

Query: 849 IEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGA 908
             EG L   RA++V    L+ ++K +    ++L + G DL         M + FEA++GA
Sbjct: 70  YPEGKLTKLRASLVCEFTLSQISKELKFGHYVLLSKGEDLTGGRNRNSIMCDLFEAVLGA 129

Query: 909 LFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
           ++LDGG+D A +     L  D E       Y  +  LQE
Sbjct: 130 IYLDGGLDEAKKFVHRFLLDDVETH--SLFYDAKSTLQE 166


>gi|320104374|ref|YP_004179965.1| RNAse III [Isosphaera pallida ATCC 43644]
 gi|319751656|gb|ADV63416.1| RNAse III [Isosphaera pallida ATCC 43644]
          Length = 238

 Score = 79.7 bits (195), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 61/99 (61%), Gaps = 1/99 (1%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           +  NERLEFLGD+V+  I    LFH+FP+ +EG L   ++ +V  Q    +A+++GL+++
Sbjct: 41  LASNERLEFLGDSVLGMIVCDTLFHLFPEAKEGDLTRIKSVVVSRQTCTKIARKLGLQNY 100

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
           +L   G     +      +AN FE+++GA++LD G + A
Sbjct: 101 LLLGKGMGPSSQAPAS-TLANVFESVVGAIYLDSGFEAA 138


>gi|312795542|ref|YP_004028464.1| ribonuclease III [Burkholderia rhizoxinica HKI 454]
 gi|312167317|emb|CBW74320.1| Ribonuclease III (EC 3.1.26.3) [Burkholderia rhizoxinica HKI 454]
          Length = 408

 Score = 79.7 bits (195), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 60/104 (57%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+  + +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + +
Sbjct: 48  SATHNERLEFLGDSVLNCVVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNIAE 107

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG D A  V 
Sbjct: 108 ALRLGEGELRSGGFRRPSILADTFEAVLGAIFLDGGFDAAQTVI 151


>gi|238923872|ref|YP_002937388.1| ribonuclease III [Eubacterium rectale ATCC 33656]
 gi|238875547|gb|ACR75254.1| ribonuclease III [Eubacterium rectale ATCC 33656]
          Length = 237

 Score = 79.7 bits (195), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 90/214 (42%), Gaps = 53/214 (24%)

Query: 734 LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
           LN  + +I Y F+NR+LL+ ALTH SY      N  H +                     
Sbjct: 14  LNEFQSKIGYTFKNRHLLEQALTHSSY-----ANEKHMKKH------------------- 49

Query: 794 NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
                                      + NERLEFLGDAV+E ++S  LF  +P   EG 
Sbjct: 50  ---------------------------SDNERLEFLGDAVLEIVSSEFLFINYPQKPEGE 82

Query: 854 LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
           L   RA+IV    LA   K + L  ++    G D     + K  +++  EA++GA++LDG
Sbjct: 83  LTKLRASIVCEPTLALCTKPLDLGKYLRLGRGEDHTGGRKRKSILSDALEAVIGAIYLDG 142

Query: 914 GIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
           G   A +     +  D  +  KQ  Y  +  LQE
Sbjct: 143 GFTNAKEFVLRFIMTD--IENKQLFYDSKTILQE 174


>gi|405980390|ref|ZP_11038729.1| ribonuclease III [Actinomyces turicensis ACS-279-V-Col4]
 gi|404390383|gb|EJZ85452.1| ribonuclease III [Actinomyces turicensis ACS-279-V-Col4]
          Length = 264

 Score = 79.7 bits (195), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 1/106 (0%)

Query: 812 RKVATESN-ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
           R  A E+  + +NERLEFLGDAV+   T+  LFH +PD+ E  L+  RA+ V    LA  
Sbjct: 60  RSYANEAGGLPNNERLEFLGDAVLSVTTADRLFHDYPDVTESSLSQMRASTVSQTPLAQA 119

Query: 871 AKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
           A+RIGL DF+    G       +    +++ FEAL+GA +L  G++
Sbjct: 120 ARRIGLGDFIFLGRGEAASGGSDKDSILSDTFEALIGATYLTHGME 165


>gi|403234829|ref|ZP_10913415.1| ribonuclease III [Bacillus sp. 10403023]
          Length = 243

 Score = 79.7 bits (195), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S  LF  +P + EG L   RAAIV    L  LA  +   + +L 
Sbjct: 54  NERLEFLGDAVLELTISKFLFKKYPIMSEGELTKMRAAIVCEPSLVTLANDLQFGELVLL 113

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFS-SVLYKDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD G++V +Q    +V+ K N   F   M Y 
Sbjct: 114 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLEVVNQFLEKTVIPKINAGAFSHVMDYK 173

Query: 942 QHPLQEQEPDG 952
               +  + DG
Sbjct: 174 SQLQELVQRDG 184


>gi|73748788|ref|YP_308027.1| ribonuclease III [Dehalococcoides sp. CBDB1]
 gi|90101624|sp|Q3ZXY9.1|RNC_DEHSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|73660504|emb|CAI83111.1| ribonuclease III [Dehalococcoides sp. CBDB1]
          Length = 237

 Score = 79.7 bits (195), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 60/99 (60%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NER+EFLGDAV+  I +  L+H FPDI+EG L  +R+ +V+ + L  +A  I L  ++  
Sbjct: 42  NERMEFLGDAVLGVIFADRLYHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYL 101

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
             G D+         +A  FEA++ A+++D G+DV  +V
Sbjct: 102 GRGEDVSKGRFKPANLAGAFEAVLAAIYIDKGMDVTREV 140


>gi|319774962|ref|YP_004137450.1| ribonuclease III [Haemophilus influenzae F3047]
 gi|329123136|ref|ZP_08251706.1| ribonuclease III [Haemophilus aegyptius ATCC 11116]
 gi|317449553|emb|CBY85758.1| Ribonuclease III [Haemophilus influenzae F3047]
 gi|327471691|gb|EGF17133.1| ribonuclease III [Haemophilus aegyptius ATCC 11116]
          Length = 227

 Score = 79.7 bits (195), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 16/146 (10%)

Query: 812 RKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLA 871
           R  AT+    HNERLEFLGD+++ F  +  L+H FP   EG L+  RA +V+   LA LA
Sbjct: 28  RSAATQ----HNERLEFLGDSILNFTIAEALYHQFPRCNEGELSRMRATLVRESTLAILA 83

Query: 872 KRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSVLY 927
           ++  L D+M    G         +  +A+C EA++GA+ LD G+ V  QV    +  +L 
Sbjct: 84  RQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSLDQGLAVTTQVIRNWYQQLLA 143

Query: 928 --------KDNEVRFKQWMYYPQHPL 945
                   KD + R ++++     PL
Sbjct: 144 EIKPGDNQKDAKTRLQEYLQGKHLPL 169


>gi|148658678|ref|YP_001278883.1| ribonuclease III [Roseiflexus sp. RS-1]
 gi|254807897|sp|A5V230.1|RNC_ROSS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|148570788|gb|ABQ92933.1| RNAse III [Roseiflexus sp. RS-1]
          Length = 237

 Score = 79.7 bits (195), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 41/109 (37%), Positives = 65/109 (59%)

Query: 808 SKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHL 867
           S L   V    ++  NERLEFLGDA++ F+ +  +F  FPD  EG L  +R A+++ + L
Sbjct: 30  SFLNEHVEERMHLDSNERLEFLGDAIINFLAARLVFERFPDAGEGELTAWRTALIRTETL 89

Query: 868 AHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
           A  A+R  L  ++L A G +     + +  +A+ FEA++ ALFLD G++
Sbjct: 90  AGFAQRYNLGAYVLLARGEESSGARQRQALLADTFEAVIAALFLDQGLN 138


>gi|160880576|ref|YP_001559544.1| ribonuclease III [Clostridium phytofermentans ISDg]
 gi|160429242|gb|ABX42805.1| Ribonuclease III [Clostridium phytofermentans ISDg]
          Length = 235

 Score = 79.7 bits (195), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 11/151 (7%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           S + +NERLEFLGDAV+E  TS  LF   P + EG L   RA++V  Q LA  A+ + L 
Sbjct: 43  SKLANNERLEFLGDAVLELTTSEWLFEKHPKMPEGDLTKLRASMVCEQTLALCARELHLG 102

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQW 937
           +++    G D     +    +++  E+++GA++LDGG   A +  S+ +  D  +  K+ 
Sbjct: 103 NYVFLGKGEDTTGGRDRDSILSDALESIIGAIYLDGGFANAKEFISNYILSD--IEHKKL 160

Query: 938 MYYPQHPLQEQEPDGDRQWVEQSPLLKQLQY 968
            Y  +  LQE         + QS   K L Y
Sbjct: 161 FYDSKTILQE---------IVQSEYKKHLSY 182


>gi|168698810|ref|ZP_02731087.1| ribonuclease III [Gemmata obscuriglobus UQM 2246]
          Length = 215

 Score = 79.7 bits (195), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 1/113 (0%)

Query: 806 IMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQ 865
           + S L    +  +    NERLEFLGD+V+  +T   L+  FP+ +EG L   ++A+V  +
Sbjct: 4   LRSALTHTSSANTRAASNERLEFLGDSVLGLVTCEQLYRRFPEYQEGDLTKVKSAVVSRK 63

Query: 866 HLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
             A  ++ I L DF+    G +   E+ L + +AN FE+L+ A+FLDGG D A
Sbjct: 64  TCARFSQEIRLGDFLFLGRGVNSNGEMPL-NILANAFESLVAAVFLDGGWDAA 115


>gi|147669550|ref|YP_001214368.1| ribonuclease III [Dehalococcoides sp. BAV1]
 gi|289432809|ref|YP_003462682.1| ribonuclease III [Dehalococcoides sp. GT]
 gi|452203773|ref|YP_007483906.1| ribonuclease III [Dehalococcoides mccartyi DCMB5]
 gi|146270498|gb|ABQ17490.1| RNAse III [Dehalococcoides sp. BAV1]
 gi|288946529|gb|ADC74226.1| ribonuclease III [Dehalococcoides sp. GT]
 gi|452110832|gb|AGG06564.1| ribonuclease III [Dehalococcoides mccartyi DCMB5]
          Length = 248

 Score = 79.3 bits (194), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 60/99 (60%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NER+EFLGDAV+  I +  L+H FPDI+EG L  +R+ +V+ + L  +A  I L  ++  
Sbjct: 53  NERMEFLGDAVLGVIFADRLYHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYL 112

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
             G D+         +A  FEA++ A+++D G+DV  +V
Sbjct: 113 GRGEDVSKGRFKPANLAGAFEAVLAAIYIDKGMDVTREV 151


>gi|323142424|ref|ZP_08077250.1| ribonuclease III [Phascolarctobacterium succinatutens YIT 12067]
 gi|322413117|gb|EFY04010.1| ribonuclease III [Phascolarctobacterium succinatutens YIT 12067]
          Length = 239

 Score = 79.3 bits (194), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 59/96 (61%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNER+EFLGD+V+  I S +++  FPD+ EG L   RA +V    L   AK+I L D++ 
Sbjct: 47  HNERIEFLGDSVLSVIVSTYMYKNFPDLAEGQLTKLRAYLVCEGSLYEYAKKIHLGDYLQ 106

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDV 917
              G +L    E    +A+ FE+++GA++LD G +V
Sbjct: 107 LGKGEELSGGRERPSILADAFESVLGAIYLDQGFEV 142


>gi|145630695|ref|ZP_01786474.1| ribonuclease III [Haemophilus influenzae R3021]
 gi|145641851|ref|ZP_01797426.1| ribonuclease III [Haemophilus influenzae R3021]
 gi|144983821|gb|EDJ91271.1| ribonuclease III [Haemophilus influenzae R3021]
 gi|145273473|gb|EDK13344.1| ribonuclease III [Haemophilus influenzae 22.4-21]
          Length = 227

 Score = 79.3 bits (194), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 13/162 (8%)

Query: 797 KRGINTLINIMSKLGRKVATESNIT-HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLA 855
           +R I    N ++ L + +   S  T HNERLEFLGD+++ F  +  L+H FP   EG L+
Sbjct: 8   ERKIGYRFNDIALLKQALTHRSAATQHNERLEFLGDSILNFTIAEALYHQFPRCNEGELS 67

Query: 856 TYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGI 915
             RA +V+   LA LA++  L D+M    G         +  +A+C EA++GA+ LD G+
Sbjct: 68  RMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSLDQGL 127

Query: 916 DVADQV----FSSVLY--------KDNEVRFKQWMYYPQHPL 945
            V  QV    +  +L         KD + R ++++     PL
Sbjct: 128 AVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPL 169


>gi|319896432|ref|YP_004134625.1| ribonuclease iii [Haemophilus influenzae F3031]
 gi|317431934|emb|CBY80282.1| Ribonuclease III [Haemophilus influenzae F3031]
          Length = 227

 Score = 79.3 bits (194), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 16/146 (10%)

Query: 812 RKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLA 871
           R  AT+    HNERLEFLGD+++ F  +  L+H FP   EG L+  RA +V+   LA LA
Sbjct: 28  RSAATQ----HNERLEFLGDSILNFTIAEALYHQFPRCNEGELSRMRATLVRESTLAILA 83

Query: 872 KRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSVLY 927
           ++  L D+M    G         +  +A+C EA++GA+ LD G+ V  QV    +  +L 
Sbjct: 84  RQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSLDQGLAVTTQVIRNWYQQLLA 143

Query: 928 --------KDNEVRFKQWMYYPQHPL 945
                   KD + R ++++     PL
Sbjct: 144 EIKPGDNQKDAKTRLQEYLQGKHLPL 169


>gi|374708678|ref|ZP_09713112.1| ribonuclease III [Sporolactobacillus inulinus CASD]
          Length = 242

 Score = 79.3 bits (194), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           ERLEFLGDAV+E + S HLF  +P++ EG +   RAAIV    L   A  +  E+ +   
Sbjct: 57  ERLEFLGDAVLELLISQHLFKNYPELSEGDMTKLRAAIVCETGLFQFASSLSFEEMIFLG 116

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            G ++    +    +A+ FEA +GAL+LD G+   ++    V+Y
Sbjct: 117 RGEEVTGGRKRPSLLADVFEAFVGALYLDQGLQEVERFLEKVVY 160


>gi|16271989|ref|NP_438187.1| ribonuclease III [Haemophilus influenzae Rd KW20]
 gi|260580682|ref|ZP_05848509.1| ribonuclease III [Haemophilus influenzae RdAW]
 gi|1173093|sp|P44441.1|RNC_HAEIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|1572958|gb|AAC21692.1| ribonuclease III (rnc) [Haemophilus influenzae Rd KW20]
 gi|260092744|gb|EEW76680.1| ribonuclease III [Haemophilus influenzae RdAW]
          Length = 227

 Score = 79.3 bits (194), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 13/162 (8%)

Query: 797 KRGINTLINIMSKLGRKVATESNIT-HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLA 855
           +R I    N ++ L + +   S  T HNERLEFLGD+++ F  +  L+H FP   EG L+
Sbjct: 8   ERKIGYRFNDIALLKQALTHRSAATQHNERLEFLGDSILNFTIAEALYHQFPRCNEGELS 67

Query: 856 TYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGI 915
             RA +V+   LA LA++  L D+M    G         +  +A+C EA++GA+ LD G+
Sbjct: 68  RMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSLDQGL 127

Query: 916 DVADQV----FSSVLY--------KDNEVRFKQWMYYPQHPL 945
            V  QV    +  +L         KD + R ++++     PL
Sbjct: 128 AVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPL 169


>gi|419839848|ref|ZP_14363249.1| ribonuclease III [Haemophilus haemolyticus HK386]
 gi|386908950|gb|EIJ73634.1| ribonuclease III [Haemophilus haemolyticus HK386]
          Length = 227

 Score = 79.3 bits (194), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 13/162 (8%)

Query: 797 KRGINTLINIMSKLGRKVATESNIT-HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLA 855
           +R I    N ++ L + +   S  T HNERLEFLGD+++ F  +  L+H FP   EG L+
Sbjct: 8   ERKIGYRFNDIALLKQALTHRSAATQHNERLEFLGDSILNFTIAEALYHQFPRCNEGELS 67

Query: 856 TYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGI 915
             RA +V+   LA LA++  L D+M    G         +  +A+C EA++GA+ LD G+
Sbjct: 68  RMRATLVREPTLAILARQFELGDYMSLGSGELKSGGFRRESILADCVEAIIGAMSLDQGL 127

Query: 916 DVADQV----FSSVLY--------KDNEVRFKQWMYYPQHPL 945
            V  QV    +  +L         KD + R ++++     PL
Sbjct: 128 TVTIQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPL 169


>gi|261253900|ref|ZP_05946473.1| ribonuclease III [Vibrio orientalis CIP 102891 = ATCC 33934]
 gi|417954580|ref|ZP_12597613.1| ribonuclease III [Vibrio orientalis CIP 102891 = ATCC 33934]
 gi|260937291|gb|EEX93280.1| ribonuclease III [Vibrio orientalis CIP 102891 = ATCC 33934]
 gi|342815126|gb|EGU50053.1| ribonuclease III [Vibrio orientalis CIP 102891 = ATCC 33934]
          Length = 225

 Score = 79.3 bits (194), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANGKHNERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGNTLAELGREFELG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSV 925
           D +    G            +A+  EA++GA++LD  I+V             D +   V
Sbjct: 91  DHLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEVVRGIILSWYKTRLDAIKPGV 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|224372163|ref|YP_002606535.1| ribonuclease III [Nautilia profundicola AmH]
 gi|223589278|gb|ACM93014.1| ribonuclease III [Nautilia profundicola AmH]
          Length = 226

 Score = 79.3 bits (194), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 45/118 (38%), Positives = 70/118 (59%), Gaps = 9/118 (7%)

Query: 812 RKVATESNITH--------NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQ 863
           +K+ TE+ +TH        NERLEFLGDAV++ I   +LFH+FP  EEG L+  RAA+V 
Sbjct: 17  KKLITEA-LTHRSYKKEVNNERLEFLGDAVMDLIVGEYLFHLFPKAEEGILSKLRAALVN 75

Query: 864 NQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
                 LAKR+ L  ++  +   +  +  E    +++ FEA++GA++L+ G + A  V
Sbjct: 76  EDSFTRLAKRLNLGKYLYLSPAEENNNGREKPSILSSAFEAVIGAIYLEAGFEKAKDV 133



 Score = 40.0 bits (92), Expect = 5.9,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 965  QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            Q+  LE S G  F + +L+    T RS  Y      +N+RLEFLGD V+ LI  +YL+
Sbjct: 2    QISELEKSLGYQFKNKKLITEALTHRS--YKKEV--NNERLEFLGDAVMDLIVGEYLF 55


>gi|452205270|ref|YP_007485399.1| ribonuclease III [Dehalococcoides mccartyi BTF08]
 gi|452112326|gb|AGG08057.1| ribonuclease III [Dehalococcoides mccartyi BTF08]
          Length = 248

 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 60/99 (60%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NER+EFLGDAV+  I +  L+H FPDI+EG L  +R+ +V+ + L  +A  I L  ++  
Sbjct: 53  NERMEFLGDAVLGVIFADRLYHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYL 112

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
             G D+         +A  FEA++ A+++D G+DV  +V
Sbjct: 113 GRGEDVSKGRFKPANLAGAFEAVLAAIYIDKGMDVTREV 151


>gi|390945585|ref|YP_006409345.1| ribonuclease III [Alistipes finegoldii DSM 17242]
 gi|390422154|gb|AFL76660.1| ribonuclease III [Alistipes finegoldii DSM 17242]
          Length = 257

 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 74/124 (59%), Gaps = 4/124 (3%)

Query: 804 INIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQ 863
           + ++ K    V  +    +NERLEFLGDAV+E +TS +LF  +PD +EG L   R+ IV 
Sbjct: 39  LALIHKSASLVLEDGRAINNERLEFLGDAVIEAVTSDYLFIEYPDRDEGFLTQLRSKIVS 98

Query: 864 NQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFS 923
            Q L  LA  IGL+  ++ ++GS     V  KH   + FEA++GA++LD G +  +++  
Sbjct: 99  RQSLNVLAVNIGLDRHVI-SNGST---SVTQKHIYGDAFEAMIGAVYLDQGYEFVNRLLI 154

Query: 924 SVLY 927
           + +Y
Sbjct: 155 NRIY 158


>gi|194335354|ref|YP_002017148.1| Ribonuclease III [Pelodictyon phaeoclathratiforme BU-1]
 gi|194307831|gb|ACF42531.1| Ribonuclease III [Pelodictyon phaeoclathratiforme BU-1]
          Length = 273

 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 1/113 (0%)

Query: 815 ATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI 874
           AT S I  N+RLEFLGD+V+  + S +LF  FP   EG L++ RA IV ++ LA  A+ +
Sbjct: 75  ATTSLIESNQRLEFLGDSVLGMLISEYLFRKFPTSAEGELSSNRAKIVNSKSLAGFARSL 134

Query: 875 GLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA-DQVFSSVL 926
            L D ++    +D       + A+A+ FE+L+GA++LD GI  A D V  S++
Sbjct: 135 CLGDHLILGESADHHKIRSSESALADAFESLIGAIYLDKGIKTAFDFVIRSII 187



 Score = 39.7 bits (91), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 3/62 (4%)

Query: 964  KQLQYLEYSSGVIFNHIRLLARVFTTRSMGY---TNLTLGSNQRLEFLGDTVLQLITSDY 1020
            + + YL+   G   +++ L     T RS+ +   T   + SNQRLEFLGD+VL ++ S+Y
Sbjct: 42   ETVAYLQQLVGEPVSNLPLYQTALTHRSVVHDPATTSLIESNQRLEFLGDSVLGMLISEY 101

Query: 1021 LY 1022
            L+
Sbjct: 102  LF 103


>gi|227824522|ref|ZP_03989354.1| ribonuclease [Acidaminococcus sp. D21]
 gi|352684988|ref|YP_004896973.1| ribonuclease [Acidaminococcus intestini RyC-MR95]
 gi|226905021|gb|EEH90939.1| ribonuclease [Acidaminococcus sp. D21]
 gi|350279643|gb|AEQ22833.1| ribonuclease [Acidaminococcus intestini RyC-MR95]
          Length = 238

 Score = 79.3 bits (194), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/106 (36%), Positives = 66/106 (62%), Gaps = 4/106 (3%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           N+RLEFLGD+V+  + S HL+  +P+++EG L+ +RA +V  + LA LA+ + + D++L 
Sbjct: 48  NQRLEFLGDSVLSLVVSTHLYLAYPEMDEGALSKFRAFLVCEETLAELAQDLAIGDYLLL 107

Query: 883 AHGSDLCHEVELKHA--MANCFEALMGALFLDGGIDVADQVFSSVL 926
             G   CH     +   +A+ FE++MGA +LD G +    + + VL
Sbjct: 108 GRGE--CHMGGRYNPSILADAFESVMGAYYLDAGYEKVRDLLTRVL 151


>gi|406936515|gb|EKD70217.1| hypothetical protein ACD_46C00599G0006 [uncultured bacterium]
          Length = 224

 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 60/98 (61%), Gaps = 2/98 (2%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDAVV F+ +  L+  FP   EG L+ +RA +V    LA LAK+  L  F+ 
Sbjct: 32  HNERLEFLGDAVVNFVIAEVLYKQFPQATEGELSRWRATLVNRDTLADLAKKFDLGSFLF 91

Query: 882 YAHGSDLCHEVELKHAMANC-FEALMGALFLDGGIDVA 918
              G ++      +H++ +C  EA++GA++LDGG  V 
Sbjct: 92  LGPG-EIRSGGHARHSILSCAMEAIIGAIYLDGGFAVV 128


>gi|339477725|ref|YP_004706545.1| ribonuclease III [Candidatus Moranella endobia PCIT]
 gi|338172276|gb|AEI74677.1| ribonuclease III [Candidatus Moranella endobia PCIT]
          Length = 229

 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 61/101 (60%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ ++ +  L+ +FP ++EG ++  RA +V+   LA +A+ + L   ++
Sbjct: 37  HNERLEFLGDSILSYVIAKSLYEMFPLVDEGDMSRIRATLVRGNTLAEMARELELSRCLI 96

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
             HG      +  +  +A+  EAL+G++FLD  I   D + 
Sbjct: 97  LGHGELKSGGINRESILADALEALIGSIFLDSNIQTVDHLI 137


>gi|304389333|ref|ZP_07371298.1| ribonuclease III [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315655502|ref|ZP_07908401.1| ribonuclease III [Mobiluncus curtisii ATCC 51333]
 gi|315656591|ref|ZP_07909478.1| ribonuclease III [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|304327451|gb|EFL94684.1| ribonuclease III [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315490157|gb|EFU79783.1| ribonuclease III [Mobiluncus curtisii ATCC 51333]
 gi|315492546|gb|EFU82150.1| ribonuclease III [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 249

 Score = 79.3 bits (194), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/94 (43%), Positives = 59/94 (62%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV++ + + +LF  FPD+ EG LA  RAA V    LA +A+R+ L D++L 
Sbjct: 59  NERLEFLGDAVLQIVVTEYLFRNFPDVPEGELAPMRAATVSQTPLAEVARRLHLGDYILL 118

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
             G D     E    +++  EAL+GA +L  G++
Sbjct: 119 GIGEDRQGGREKDSILSDTLEALIGASYLTSGLE 152


>gi|399047096|ref|ZP_10739228.1| ribonuclease III [Brevibacillus sp. CF112]
 gi|398054929|gb|EJL47027.1| ribonuclease III [Brevibacillus sp. CF112]
          Length = 233

 Score = 79.3 bits (194), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/108 (38%), Positives = 58/108 (53%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I+ NERLEFLGDAV+E   S  L+  FP + EG +   RAAIV    L   A+ +   D 
Sbjct: 43  ISDNERLEFLGDAVLELTVSQFLYKTFPKMSEGEMTKLRAAIVCEPSLVKFAELLNFGDL 102

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +L    +    +A+ FEA +GAL+LD G+D         +Y
Sbjct: 103 VLLGKGEELTGGRQRPALLADVFEAFVGALYLDQGLDAVFSFMEKYVY 150


>gi|298346956|ref|YP_003719643.1| ribonuclease III [Mobiluncus curtisii ATCC 43063]
 gi|298237017|gb|ADI68149.1| ribonuclease III [Mobiluncus curtisii ATCC 43063]
          Length = 249

 Score = 79.3 bits (194), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/94 (43%), Positives = 59/94 (62%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV++ + + +LF  FPD+ EG LA  RAA V    LA +A+R+ L D++L 
Sbjct: 59  NERLEFLGDAVLQIVVTEYLFRNFPDVPEGELAPMRAATVSQTPLAEVARRLHLGDYILL 118

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
             G D     E    +++  EAL+GA +L  G++
Sbjct: 119 GIGEDRQGGREKDSILSDTLEALIGASYLTSGLE 152


>gi|398814573|ref|ZP_10573254.1| ribonuclease III [Brevibacillus sp. BC25]
 gi|398036842|gb|EJL30051.1| ribonuclease III [Brevibacillus sp. BC25]
          Length = 233

 Score = 79.3 bits (194), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/108 (38%), Positives = 58/108 (53%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I+ NERLEFLGDAV+E   S  L+  FP + EG +   RAAIV    L   A+ +   D 
Sbjct: 43  ISDNERLEFLGDAVLELTVSQFLYKTFPKMSEGEMTKLRAAIVCEPSLVKFAELLNFGDL 102

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +L    +    +A+ FEA +GAL+LD G+D         +Y
Sbjct: 103 VLLGKGEELTGGRQRPALLADVFEAFVGALYLDQGLDAVFSFMEKYVY 150


>gi|326794405|ref|YP_004312225.1| ribonuclease 3 [Marinomonas mediterranea MMB-1]
 gi|326545169|gb|ADZ90389.1| Ribonuclease 3 [Marinomonas mediterranea MMB-1]
          Length = 227

 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 12/140 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ ++ +  LFH FP  +EG L+  RA++V+   LA LA+   L DF+ 
Sbjct: 35  NNERLEFLGDSILNYVIAEDLFHRFPKAKEGELSRLRASLVKGDTLAELAREFQLGDFLK 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLYKD 929
              G            +A+  E ++GA++LD G+D              D    +V+ KD
Sbjct: 95  LGAGELKSGGFRRDSILADTVEGIIGAMYLDAGMDTCKNQILEWYKTRLDATSLNVVTKD 154

Query: 930 NEVRFKQWMYYPQHPLQEQE 949
            + R ++++   +H L + E
Sbjct: 155 AKTRLQEYLQARKHGLPQYE 174


>gi|148827174|ref|YP_001291927.1| ribonuclease III [Haemophilus influenzae PittGG]
 gi|189043320|sp|A5UFI8.1|RNC_HAEIG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|148718416|gb|ABQ99543.1| ribonuclease III [Haemophilus influenzae PittGG]
          Length = 227

 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 13/162 (8%)

Query: 797 KRGINTLINIMSKLGRKVATESNIT-HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLA 855
           +R I    N ++ L + +   S  T HNERLEFLGD+++ F  +  L+H FP   EG L+
Sbjct: 8   ERKIGYRFNDIALLKQALTHRSAATQHNERLEFLGDSILNFTIAEALYHQFPRCNEGELS 67

Query: 856 TYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGI 915
             RA +V+   LA LA++  L D+M    G         +  +A+C EA++GA+ LD G+
Sbjct: 68  RMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSLDQGL 127

Query: 916 DVADQV----FSSVLY--------KDNEVRFKQWMYYPQHPL 945
            V  QV    +  +L         KD + R ++++     PL
Sbjct: 128 AVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPL 169


>gi|406960077|gb|EKD87256.1| hypothetical protein ACD_36C00174G0004 [uncultured bacterium]
          Length = 228

 Score = 79.3 bits (194), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/107 (37%), Positives = 62/107 (57%)

Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
           + NERLEFLGDAV+ F+TS  L+  +P   EG L   R+++V+ Q L  +AK +   + +
Sbjct: 38  SSNERLEFLGDAVLSFLTSNFLYKTYPQYPEGVLTNIRSSLVKTQSLGDVAKTLNFGELL 97

Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             + G +     +    +A+ FEA +GALFLD GI+ A +     L+
Sbjct: 98  FLSRGEEESEGRKNSSLLADTFEAFLGALFLDQGIEKAQRFLEQYLF 144



 Score = 42.4 bits (98), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 969  LEYSSGVIFNHIRLLARVFTTRSMGYTNLTL-GSNQRLEFLGDTVLQLITSDYLY 1022
            L+   G+ F    LL   F  RS    N  +  SN+RLEFLGD VL  +TS++LY
Sbjct: 6    LQKKVGIQFKDTALLKHAFIHRSYLNENKQITSSNERLEFLGDAVLSFLTSNFLY 60


>gi|312111708|ref|YP_003990024.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
 gi|336236083|ref|YP_004588699.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
 gi|423720626|ref|ZP_17694808.1| ribonuclease III [Geobacillus thermoglucosidans TNO-09.020]
 gi|311216809|gb|ADP75413.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
 gi|335362938|gb|AEH48618.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
 gi|383365979|gb|EID43270.1| ribonuclease III [Geobacillus thermoglucosidans TNO-09.020]
          Length = 246

 Score = 79.3 bits (194), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/131 (36%), Positives = 66/131 (50%), Gaps = 1/131 (0%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  FP + EG L   RAAIV    L   A  +   + +L 
Sbjct: 56  NERLEFLGDAVLELTVSQYLFKKFPHMSEGELTKLRAAIVCEPSLVKFANALSFGELVLL 115

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G +L         +A+ FEA +GAL+LD G+D   Q     ++ K +E  F   M + 
Sbjct: 116 GKGEELTGGRTRPALLADVFEAFIGALYLDKGMDAVMQFLGQTIFPKIDEGAFSHVMDFK 175

Query: 942 QHPLQEQEPDG 952
               +  + DG
Sbjct: 176 SQLQELVQRDG 186


>gi|375089330|ref|ZP_09735657.1| ribonuclease III [Facklamia languida CCUG 37842]
 gi|374567106|gb|EHR38337.1| ribonuclease III [Facklamia languida CCUG 37842]
          Length = 231

 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 11/132 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           S++  NERLEFLGDAV+E   S  L+  +P   EG L   RA +V+   LA++++++  +
Sbjct: 38  SHLASNERLEFLGDAVLELAVSNFLYSTYPREGEGVLTRMRAQLVREPSLAYVSRQLKFD 97

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY---------- 927
            F+    G       +    +++CFEA + A++LD G D A+   S VL+          
Sbjct: 98  HFLRLGKGEQATGGSQRDSILSDCFEAFLAAIYLDQGSDQAEAFLSRVLFDHHQEILRLT 157

Query: 928 -KDNEVRFKQWM 938
            +D + +F++W+
Sbjct: 158 NQDYKTQFQEWV 169



 Score = 40.4 bits (93), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 966  LQYLEYSSGVIFNHIRLLARVF--TTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            + Y+    G+  N+ +L+ + F  T+    +    L SN+RLEFLGD VL+L  S++LY
Sbjct: 5    MTYISEDLGIKVNNPQLIEQAFHHTSYVNEHGGSHLASNERLEFLGDAVLELAVSNFLY 63


>gi|320536816|ref|ZP_08036812.1| ribonuclease III [Treponema phagedenis F0421]
 gi|320146325|gb|EFW37945.1| ribonuclease III [Treponema phagedenis F0421]
          Length = 243

 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 86/161 (53%), Gaps = 19/161 (11%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           E++  +NERLEFLGD+V+  +T+  L+++  D  EG LA  +A +V  + L+ +A  + +
Sbjct: 47  EASFQNNERLEFLGDSVLGLVTASCLYNLLSDCSEGELAKTKAVLVSEETLSDIALSLDV 106

Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL---------- 926
           + +++   G ++      K  +A+  EA++GAL+LD G  VA++    ++          
Sbjct: 107 DKYIMLGRGEEMSGGRRKKAILADAMEAIIGALYLDSGFKVAEKFVLRIITPKIPLVRNE 166

Query: 927 -----YKD--NEVRFKQWMYYPQHP-LQEQEPDGDRQ-WVE 958
                YK    E+  K++   P +  ++ Q PD DR  WVE
Sbjct: 167 NLHMDYKSALQELSQKKFQILPLYTVVKAQGPDHDRTFWVE 207



 Score = 41.2 bits (95), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 973  SGVIFNHIRLLARVFTTRSMGYTN-LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            +G  F +++LL   F  RS  + +  +  +N+RLEFLGD+VL L+T+  LY
Sbjct: 23   AGFKFKNLKLLNLAFHHRSFSHIHEASFQNNERLEFLGDSVLGLVTASCLY 73


>gi|393201759|ref|YP_006463601.1| dsRNA-specific ribonuclease [Solibacillus silvestris StLB046]
 gi|406664636|ref|ZP_11072411.1| Ribonuclease 3 [Bacillus isronensis B3W22]
 gi|327441090|dbj|BAK17455.1| dsRNA-specific ribonuclease [Solibacillus silvestris StLB046]
 gi|405387484|gb|EKB46908.1| Ribonuclease 3 [Bacillus isronensis B3W22]
          Length = 253

 Score = 79.3 bits (194), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/112 (40%), Positives = 61/112 (54%)

Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
           T NERLEFLGDAV+E   S +LF  FP + EG L   RA+IV    L   A  +    F+
Sbjct: 59  TDNERLEFLGDAVLELSVSKYLFEKFPHMSEGELTKLRASIVCEPSLVVFANELNFGQFV 118

Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV 932
           L   G +L    E    +A+ FE+ +GAL+LD G++V       V++   EV
Sbjct: 119 LLGKGEELTGGRERPALLADVFESFVGALYLDQGLEVVVAFLERVVFPKVEV 170


>gi|15672784|ref|NP_266958.1| ribonuclease III [Lactococcus lactis subsp. lactis Il1403]
 gi|385830346|ref|YP_005868159.1| ribonuclease III [Lactococcus lactis subsp. lactis CV56]
 gi|13878708|sp|Q9CHD0.1|RNC_LACLA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|12723723|gb|AAK04900.1|AE006313_7 ribonuclease III [Lactococcus lactis subsp. lactis Il1403]
 gi|326406354|gb|ADZ63425.1| ribonuclease III [Lactococcus lactis subsp. lactis CV56]
 gi|374672851|dbj|BAL50742.1| ribonuclease III [Lactococcus lactis subsp. lactis IO-1]
          Length = 231

 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 17/155 (10%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I +NERLEFLGD  +  + S +L+  +P+  EG L+  R++IV+ + LA+ ++  G  +F
Sbjct: 40  IANNERLEFLGDVALSLVISDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEF 99

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFK 935
           +   HG +     + +  + N FEA +GALF+D G+D   +    V+      D+ V+  
Sbjct: 100 LRLGHGEEKMGGRDRETTLENLFEAFLGALFIDQGMDEVRKFIQHVVIPHVKNDDYVKVI 159

Query: 936 QWMYYPQHPLQ-------------EQEPDGDRQWV 957
            +    Q  LQ             E+ P  DR +V
Sbjct: 160 DYKTELQEVLQIGGETTISYKILKEEGPAHDRSFV 194



 Score = 46.6 bits (109), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 6/65 (9%)

Query: 962  LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLIT 1017
            +LK  + L+   G++FN   LL   FT  S  +TN      + +N+RLEFLGD  L L+ 
Sbjct: 1    MLKLQKKLKNDYGLVFNDEDLLKTAFTHSS--FTNEERLPKIANNERLEFLGDVALSLVI 58

Query: 1018 SDYLY 1022
            SDYLY
Sbjct: 59   SDYLY 63


>gi|163814044|ref|ZP_02205436.1| hypothetical protein COPEUT_00197 [Coprococcus eutactus ATCC 27759]
 gi|158450493|gb|EDP27488.1| ribonuclease III [Coprococcus eutactus ATCC 27759]
          Length = 232

 Score = 79.3 bits (194), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 3/151 (1%)

Query: 798 RGINTLINIMSKLGRKVATESNITHN-ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
           + IN LI  ++        + N T + ERLEFLGDA++E+I S +LF    + EEG L  
Sbjct: 20  KDINLLITALTHTSFANELKVNKTDSYERLEFLGDAILEYIVSEYLFLKKKEYEEGRLTK 79

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            RA++V    L+ +++ +G  D++  + G +L    + K  + + FE+++GA++LDGGI+
Sbjct: 80  LRASLVCEFTLSQISESLGYGDYVRLSKGEELTGGRKRKSILCDLFESVLGAMYLDGGIE 139

Query: 917 VADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
            A +     L  D E   K   Y  +  LQE
Sbjct: 140 PAKEFVHRFLLDDVET--KSLFYDAKSTLQE 168


>gi|392411929|ref|YP_006448536.1| ribonuclease III [Desulfomonile tiedjei DSM 6799]
 gi|390625065|gb|AFM26272.1| ribonuclease III [Desulfomonile tiedjei DSM 6799]
          Length = 247

 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 59/108 (54%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I HNERLEFLGDAV+  + +  L+  FP  EEG L   RA++V    LA L +R+ L  F
Sbjct: 44  IRHNERLEFLGDAVLGLVIAEILYREFPKAEEGELQKKRASLVNRAALAQLMRRLNLAPF 103

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +    G +L    +    +A+  EAL+ A+FLDGG   A  +     Y
Sbjct: 104 IRMGRGDELSGCRDRDSILADTLEALIAAVFLDGGFTKASDMIKQHFY 151


>gi|343500463|ref|ZP_08738356.1| ribonuclease III [Vibrio tubiashii ATCC 19109]
 gi|418481439|ref|ZP_13050482.1| ribonuclease III [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
 gi|342820307|gb|EGU55131.1| ribonuclease III [Vibrio tubiashii ATCC 19109]
 gi|384570956|gb|EIF01499.1| ribonuclease III [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
          Length = 225

 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANGKHNERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGNTLAELGREFELG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSV 925
           D +    G            +A+  EA++GA++LD  I+V             D +   V
Sbjct: 91  DHLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEVVRGIILSWYKTRLDAIKPGV 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|168333987|ref|ZP_02692211.1| Ribonuclease III [Epulopiscium sp. 'N.t. morphotype B']
          Length = 239

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/96 (39%), Positives = 61/96 (63%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           E  +  NERLEFLGDA+++ I S +LF  +P+ +EG L+ +RA+IV    LA   KR+ L
Sbjct: 43  EQGVKDNERLEFLGDAILDLIVSEYLFKKYPESQEGDLSKFRASIVCEASLAKAGKRLEL 102

Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLD 912
             ++L  HG ++    + +  +A+ FEA+ GA+ +D
Sbjct: 103 GKYILLGHGEEMGGGRDRESIIADAFEAVTGAMLID 138


>gi|433462279|ref|ZP_20419866.1| ribonuclease III [Halobacillus sp. BAB-2008]
 gi|432188967|gb|ELK46109.1| ribonuclease III [Halobacillus sp. BAB-2008]
          Length = 230

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/105 (39%), Positives = 59/105 (56%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +L+  FPD+ EG L  +RA+IV    L   A  +  ++ +L 
Sbjct: 42  NERLEFLGDAVLELGVSQYLYREFPDMAEGELTKFRASIVCEVSLVEFANELNFQELILL 101

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             G ++         +A+ FEA +GAL+LD G D   Q   + +Y
Sbjct: 102 GKGEEMTGGRNRPALLADVFEAFIGALYLDQGYDKVIQFLQTYVY 146


>gi|239826585|ref|YP_002949209.1| ribonuclease III [Geobacillus sp. WCH70]
 gi|259491901|sp|C5D8T6.1|RNC_GEOSW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|239806878|gb|ACS23943.1| ribonuclease III [Geobacillus sp. WCH70]
          Length = 246

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/131 (36%), Positives = 66/131 (50%), Gaps = 1/131 (0%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  FP + EG L   RAAIV    L   A  +   + +L 
Sbjct: 56  NERLEFLGDAVLELTVSQYLFKKFPHMSEGELTKLRAAIVCEPSLVKFANALSFGELVLL 115

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G +L         +A+ FEA +GAL+LD G+D   Q     ++ K +E  F   M + 
Sbjct: 116 GKGEELTGGRTRPALLADVFEAFIGALYLDQGMDAVMQFLGQTIFPKIDEGAFSHVMDFK 175

Query: 942 QHPLQEQEPDG 952
               +  + DG
Sbjct: 176 SQLQELVQRDG 186


>gi|381397762|ref|ZP_09923171.1| Ribonuclease 3 [Microbacterium laevaniformans OR221]
 gi|380774890|gb|EIC08185.1| Ribonuclease 3 [Microbacterium laevaniformans OR221]
          Length = 230

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 1/108 (0%)

Query: 812 RKVATESN-ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
           R  A E+  I HNERLEFLGD+++    ++HLF   P++EEG LA  RA++V    LA +
Sbjct: 31  RSFAYENGGIPHNERLEFLGDSILGQAVTVHLFLTHPELEEGALAKRRASVVSTVALAEV 90

Query: 871 AKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
           A+ I L + +    G D     +    +A+  EA++GA FL  G D A
Sbjct: 91  ARGIDLGEHLRLGRGEDQTGGRDKDSILADTMEAVIGATFLSAGPDAA 138


>gi|344940862|ref|ZP_08780150.1| Ribonuclease 3 [Methylobacter tundripaludum SV96]
 gi|344262054|gb|EGW22325.1| Ribonuclease 3 [Methylobacter tundripaludum SV96]
          Length = 227

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 1/127 (0%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ F+ +  LF +FP   EG L+  RA++V    LA LA++  L D++L
Sbjct: 35  NNERLEFLGDSILGFVIAQKLFELFPGACEGVLSRLRASLVNQGSLAELARKHQLGDYLL 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ-VFSSVLYKDNEVRFKQWMYY 940
              G            +++  EA++GAL+ D G+D + Q +      K   +    W   
Sbjct: 95  LGSGELKSGGFRRDSILSDAVEAIIGALYNDQGMDASQQWILQLFAEKLKSLSLDNWQKD 154

Query: 941 PQHPLQE 947
           P+  LQE
Sbjct: 155 PKTQLQE 161


>gi|237752001|ref|ZP_04582481.1| ribonuclease III [Helicobacter winghamensis ATCC BAA-430]
 gi|229376568|gb|EEO26659.1| ribonuclease III [Helicobacter winghamensis ATCC BAA-430]
          Length = 223

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 69/106 (65%)

Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
           THNERLEFLGDAV++ I    L++ FP+  EG L+  RA++V  +  A +A+ + + +++
Sbjct: 34  THNERLEFLGDAVLDLIIGEFLYNKFPNSREGELSKMRASMVNEKAFAKIARYLNIGEYL 93

Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
             ++  +  +  +    ++N FEA++GA++L+ G+D+A  +  ++L
Sbjct: 94  FISNSEEQNNGRKKDSILSNAFEAVIGAIYLESGLDIARNLMHNLL 139


>gi|406985904|gb|EKE06602.1| hypothetical protein ACD_18C00314G0005 [uncultured bacterium]
          Length = 253

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/130 (34%), Positives = 76/130 (58%), Gaps = 14/130 (10%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   + +LF+ + +  EG L  +RAA+V     A +A+ I LED+
Sbjct: 46  LAHNERLEFLGDAVLELSVTQYLFNNYLN-PEGELTNWRAALVNGTMCARVARDIELEDY 104

Query: 880 MLYAHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSV------------L 926
           +  + G    + ++ + + +AN  EAL+GA++ D G D+A+Q  +              L
Sbjct: 105 LFLSKGESKDNNIKARDYILANALEALIGAIYFDRGWDMANQFITRFVITKLPEVLELGL 164

Query: 927 YKDNEVRFKQ 936
           + D++ RF++
Sbjct: 165 WMDSKSRFQE 174



 Score = 45.8 bits (107), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 964  KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYL 1021
            K  Q +E + G++F++  +L +    RS    N    L  N+RLEFLGD VL+L  + YL
Sbjct: 9    KNFQNIENTIGIVFDNKNILVQALVHRSFLNENRDFALAHNERLEFLGDAVLELSVTQYL 68

Query: 1022 Y 1022
            +
Sbjct: 69   F 69


>gi|281491298|ref|YP_003353278.1| ribonuclease III [Lactococcus lactis subsp. lactis KF147]
 gi|281375039|gb|ADA64557.1| Ribonuclease III [Lactococcus lactis subsp. lactis KF147]
          Length = 231

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 17/155 (10%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I +NERLEFLGD  +  + S +L+  +P+  EG L+  R++IV+ + LA+ ++  G  +F
Sbjct: 40  IANNERLEFLGDVALSLVISDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEF 99

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFK 935
           +   HG +     + +  + N FEA +GALF+D G+D   +    V+      D+ V+  
Sbjct: 100 LRLGHGEEKMGGRDRETTLENLFEAFLGALFIDQGMDEVRKFIQHVVIPHVKNDDYVKVI 159

Query: 936 QWMYYPQHPLQ-------------EQEPDGDRQWV 957
            +    Q  LQ             E+ P  DR +V
Sbjct: 160 DYKTELQEVLQIGGETTISYKILKEEGPAHDRSFV 194



 Score = 48.5 bits (114), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 6/65 (9%)

Query: 962  LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLIT 1017
            +LK  + L+   G++FN   LL  VFT  S  +TN      + +N+RLEFLGD  L L+ 
Sbjct: 1    MLKLQKKLKNDYGLVFNDEDLLKTVFTHSS--FTNEERLPKIANNERLEFLGDVALSLVI 58

Query: 1018 SDYLY 1022
            SDYLY
Sbjct: 59   SDYLY 63


>gi|407474084|ref|YP_006788484.1| ribonuclease III [Clostridium acidurici 9a]
 gi|407050592|gb|AFS78637.1| ribonuclease III [Clostridium acidurici 9a]
          Length = 241

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 51/185 (27%)

Query: 734 LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
           L  ++++ +YKF + +LL  ALTH SY                                 
Sbjct: 12  LKEIQEKTEYKFSDIHLLNWALTHSSY--------------------------------A 39

Query: 794 NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
           N  K+                     I +NERLEFLGD+++  + S ++F  +P+  EG 
Sbjct: 40  NEHKK-------------------QKIVYNERLEFLGDSILGLVVSEYIFIKYPNYPEGD 80

Query: 854 LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
           L   RA +V    L+++A++I L  ++L   G +     E    +A+ FEAL+GA++LDG
Sbjct: 81  LTKLRATVVCEPSLSYIARQIDLGKYLLLGKGEEATGGRERVSILADAFEALIGAIYLDG 140

Query: 914 GIDVA 918
            I+ A
Sbjct: 141 KIESA 145


>gi|334366557|ref|ZP_08515482.1| ribonuclease III [Alistipes sp. HGB5]
 gi|313157061|gb|EFR56491.1| ribonuclease III [Alistipes sp. HGB5]
          Length = 232

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 74/124 (59%), Gaps = 4/124 (3%)

Query: 804 INIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQ 863
           + ++ K    V  +    +NERLEFLGDAV+E +TS +LF  +PD +EG L   R+ IV 
Sbjct: 14  LALIHKSASLVLEDGRAINNERLEFLGDAVIEAVTSDYLFIEYPDRDEGFLTQLRSKIVS 73

Query: 864 NQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFS 923
            Q L  LA  IGL+  ++ ++GS     V  KH   + FEA++GA++LD G +  +++  
Sbjct: 74  RQSLNVLAVNIGLDRHVI-SNGST---SVTQKHIYGDAFEAMIGAVYLDQGYEFVNRLLI 129

Query: 924 SVLY 927
           + +Y
Sbjct: 130 NRIY 133


>gi|153853253|ref|ZP_01994662.1| hypothetical protein DORLON_00647 [Dorea longicatena DSM 13814]
 gi|149754039|gb|EDM63970.1| ribonuclease III [Dorea longicatena DSM 13814]
          Length = 235

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/149 (33%), Positives = 76/149 (51%), Gaps = 19/149 (12%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E ++S  LFH  P + EG L   RA++V    LA  A+ + L +++L 
Sbjct: 47  NERLEFLGDAVLELVSSEFLFHNNPKLPEGELTKTRASMVCEPALAFCARDLDLGEYLLL 106

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE----------- 931
             G D     + +   ++  EAL+GA++LDGG   A +     + KD E           
Sbjct: 107 GKGEDATGGRKRESVTSDAMEALIGAIYLDGGFANAKEFIHRFILKDLENKKLFFDSKTI 166

Query: 932 ------VRFKQWMYYPQHPLQEQEPDGDR 954
                   FK+ + Y  H + E+ PD ++
Sbjct: 167 LQEIVQANFKEVISY--HLIGEEGPDHNK 193


>gi|291524528|emb|CBK90115.1| RNAse III [Eubacterium rectale DSM 17629]
 gi|291527954|emb|CBK93540.1| RNAse III [Eubacterium rectale M104/1]
          Length = 227

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 90/214 (42%), Gaps = 53/214 (24%)

Query: 734 LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
           LN  + +I Y F+NR+LL+ ALTH SY      N  H +                     
Sbjct: 4   LNEFQSKIGYTFKNRHLLEQALTHSSY-----ANEKHMKKH------------------- 39

Query: 794 NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
                                      + NERLEFLGDAV+E ++S  LF  +P   EG 
Sbjct: 40  ---------------------------SDNERLEFLGDAVLEIVSSEFLFINYPQKPEGE 72

Query: 854 LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
           L   RA+IV    LA   K + L  ++    G D     + K  +++  EA++GA++LDG
Sbjct: 73  LTKLRASIVCEPTLALCTKPLDLGKYLRLGRGEDHTGGRKRKSILSDALEAVIGAIYLDG 132

Query: 914 GIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
           G   A +     +  D  +  KQ  Y  +  LQE
Sbjct: 133 GFTNAKEFVLRFIMTD--IENKQLFYDSKTILQE 164


>gi|170079136|ref|YP_001735774.1| ribonuclease III [Synechococcus sp. PCC 7002]
 gi|169886805|gb|ACB00519.1| ribonuclease III [Synechococcus sp. PCC 7002]
          Length = 258

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/110 (40%), Positives = 66/110 (60%), Gaps = 3/110 (2%)

Query: 812 RKVATES--NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQH-LA 868
           R  A E    I  NERLEFLGDAV++FI    L+  +PD +EG L+  RA++  N+H LA
Sbjct: 20  RSFANEQPETIQDNERLEFLGDAVLKFIMGKLLYERYPDFQEGELSRLRASLENNRHQLA 79

Query: 869 HLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
             A+ +GL+  +    G++     +    ++N FEA++GA FLD GI+ A
Sbjct: 80  EFAQVLGLDQILRLGKGAEKEGARQNPEILSNTFEAVVGAYFLDAGIEAA 129


>gi|160915457|ref|ZP_02077668.1| hypothetical protein EUBDOL_01465 [Eubacterium dolichum DSM 3991]
 gi|158432577|gb|EDP10866.1| ribonuclease III [Eubacterium dolichum DSM 3991]
          Length = 227

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 62/104 (59%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEF+GDAV++  ++  LFH+ P + EG + T RA +V  + LA   + +G   ++L 
Sbjct: 41  NERLEFMGDAVLQLWSTRKLFHLTPALSEGQMTTLRAQLVCEEALAAYNRTLGWGKYLLL 100

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
             G +          +A+ FEA++GA++LD G++  D +  SVL
Sbjct: 101 GVGEEKTGGRNRDSLLADMFEAVLGAIYLDQGMEAVDIILESVL 144


>gi|125624543|ref|YP_001033026.1| ribonuclease III [Lactococcus lactis subsp. cremoris MG1363]
 gi|389854915|ref|YP_006357159.1| ribonuclease III [Lactococcus lactis subsp. cremoris NZ9000]
 gi|189043323|sp|A2RLZ8.1|RNC_LACLM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|124493351|emb|CAL98325.1| ribonuclease III [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071337|gb|ADJ60737.1| ribonuclease III [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 231

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 17/155 (10%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I +NERLEFLGD  +  + S +L+  +P+  EG L+  R++IV+ + LA+ ++  G  +F
Sbjct: 40  IANNERLEFLGDVALSLVISDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEF 99

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFK 935
           +   HG +     + +  + N FEA +GALF+D G+D   +    V+      D+ V+  
Sbjct: 100 LRLGHGEEKMGGRDRETTLENLFEAFLGALFIDQGMDEVRKFIQHVVIPHVKNDDYVKVI 159

Query: 936 QWMYYPQHPLQ-------------EQEPDGDRQWV 957
            +    Q  LQ             E+ P  DR +V
Sbjct: 160 DYKTELQEVLQIGGETTISYKILKEEGPAHDRSFV 194



 Score = 46.6 bits (109), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 6/65 (9%)

Query: 962  LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLIT 1017
            +LK  + L+   G++FN   LL   FT  S  +TN      + +N+RLEFLGD  L L+ 
Sbjct: 1    MLKLQKKLKNDYGLVFNDEYLLKTAFTHSS--FTNEERLPKIANNERLEFLGDVALSLVI 58

Query: 1018 SDYLY 1022
            SDYLY
Sbjct: 59   SDYLY 63


>gi|91201952|emb|CAJ75012.1| similar to ribonuclease III [Candidatus Kuenenia stuttgartiensis]
          Length = 236

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 63/105 (60%), Gaps = 2/105 (1%)

Query: 816 TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
            E+N + NERLEFLGDAV+  I S +L+   P   EG L   ++ +V    LA +    G
Sbjct: 41  VENNFS-NERLEFLGDAVLGMIISDYLYKTMPHYSEGELTNVKSVVVSQSTLAKVGMEAG 99

Query: 876 LEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ 920
           L++F+L   G +   ++  K  +AN FEAL+ A+++DGGI+ A +
Sbjct: 100 LKEFLLVGRGLN-DRDLFPKSLLANVFEALIAAIYIDGGIEAASE 143



 Score = 40.8 bits (94), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 974  GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            G  F  + LL +  T  S    N    SN+RLEFLGD VL +I SDYLY
Sbjct: 21   GYSFKKMLLLEKALTHTSCRVENNF--SNERLEFLGDAVLGMIISDYLY 67


>gi|116511619|ref|YP_808835.1| ribonuclease III [Lactococcus lactis subsp. cremoris SK11]
 gi|385838719|ref|YP_005876349.1| Ribonuclease III [Lactococcus lactis subsp. cremoris A76]
 gi|122940253|sp|Q030F9.1|RNC_LACLS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116107273|gb|ABJ72413.1| RNAse III [Lactococcus lactis subsp. cremoris SK11]
 gi|358749947|gb|AEU40926.1| Ribonuclease III [Lactococcus lactis subsp. cremoris A76]
          Length = 231

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 17/155 (10%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I +NERLEFLGD  +  + S +L+  +P+  EG L+  R++IV+ + LA+ ++  G  +F
Sbjct: 40  IANNERLEFLGDVALSLVISDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEF 99

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFK 935
           +   HG +     + +  + N FEA +GALF+D G+D   +    V+      D+ V+  
Sbjct: 100 LRLGHGEEKMGGRDRETTLENLFEAFLGALFIDQGMDEVRKFIQHVVIPHVKNDDYVKVI 159

Query: 936 QWMYYPQHPLQ-------------EQEPDGDRQWV 957
            +    Q  LQ             E+ P  DR +V
Sbjct: 160 DYKTELQEVLQVGGETTITYNILKEEGPAHDRSFV 194



 Score = 47.0 bits (110), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 6/65 (9%)

Query: 962  LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLIT 1017
            +LK  + L+   G++FN   LL   FT  S  +TN      + +N+RLEFLGD  L L+ 
Sbjct: 1    MLKLQEKLKNDYGLVFNDEDLLKTAFTHSS--FTNEERLPKIANNERLEFLGDVALSLVI 58

Query: 1018 SDYLY 1022
            SDYLY
Sbjct: 59   SDYLY 63


>gi|433546097|ref|ZP_20502435.1| ribonuclease III [Brevibacillus agri BAB-2500]
 gi|432182713|gb|ELK40276.1| ribonuclease III [Brevibacillus agri BAB-2500]
          Length = 228

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/108 (38%), Positives = 58/108 (53%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I+ NERLEFLGDAV+E   S  L+  FP + EG +   RAAIV    L   A+ +   D 
Sbjct: 38  ISDNERLEFLGDAVLELTVSQFLYKTFPKMSEGEMTKLRAAIVCEPSLVKFAELLNFGDL 97

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +L    +    +A+ FEA +GAL+LD G+D         +Y
Sbjct: 98  VLLGKGEELTGGRQRPALLADVFEAFVGALYLDQGLDAVFSFMEKYVY 145


>gi|308048449|ref|YP_003912015.1| RNAse III [Ferrimonas balearica DSM 9799]
 gi|307630639|gb|ADN74941.1| RNAse III [Ferrimonas balearica DSM 9799]
          Length = 224

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 12/140 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLE+LGDAV+ F+ +  L+  FP + EG +   RA++V+   LA L + + L D + 
Sbjct: 36  HNERLEYLGDAVLSFVIAEALYLRFPKVAEGDMTRMRASLVKGVTLAELGRELALGDVIK 95

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLYKD 929
              G         +  +A+  EA++GA++LDGGI+V             D +   +  KD
Sbjct: 96  LGPGELKSGGFRRESILADAVEAILGAVYLDGGIEVCKPLILRLYQARLDIIEPGIRQKD 155

Query: 930 NEVRFKQWMYYPQHPLQEQE 949
            + R ++ +   + PL E E
Sbjct: 156 PKTRLQEHLQARKQPLPEYE 175


>gi|254507535|ref|ZP_05119669.1| ribonuclease III [Vibrio parahaemolyticus 16]
 gi|219549605|gb|EED26596.1| ribonuclease III [Vibrio parahaemolyticus 16]
          Length = 225

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANGKHNERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGNTLAELGREFELG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSV 925
           D +    G            +A+  EA++GA++LD  I+V             D +   V
Sbjct: 91  DHLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEVVRSIILSWYQSRLDAIKPGV 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|402829248|ref|ZP_10878124.1| ribonuclease III [Slackia sp. CM382]
 gi|402284229|gb|EJU32732.1| ribonuclease III [Slackia sp. CM382]
          Length = 312

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/152 (30%), Positives = 73/152 (48%), Gaps = 16/152 (10%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           ERLEFLGD+++  I +   FH +P+I+EGGL   + A+V    L+ +A ++G  D +++ 
Sbjct: 48  ERLEFLGDSILGAIVANEAFHAYPEIDEGGLTRIKVALVSGSSLSDVAAKLGFADIIVFG 107

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQH 943
                     L  A+ N +EA++ ALFLD G+D A       L    ++   +    P+ 
Sbjct: 108 SSERGTGRRGLHSALENVYEAVVAALFLDKGMDGARDFVRRTLIPRMDIEMAREPENPKS 167

Query: 944 PLQE----------------QEPDGDRQWVEQ 959
            LQE                Q P  DR +V Q
Sbjct: 168 ALQEKLQEEGITPTYKLVETQGPPHDRTFVSQ 199


>gi|269838233|ref|YP_003320461.1| ribonuclease III [Sphaerobacter thermophilus DSM 20745]
 gi|269787496|gb|ACZ39639.1| ribonuclease III [Sphaerobacter thermophilus DSM 20745]
          Length = 259

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 68/110 (61%), Gaps = 2/110 (1%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGD+V+  IT+  L+  FP + EG L  YR A+V+ + LA  A+R GL++ +LY
Sbjct: 61  NERLEFLGDSVLGMITAEFLYRRFPRLPEGMLTAYRTALVRTETLARWARRFGLDE-LLY 119

Query: 883 AHGSDLCHEVELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
               ++  + E++   +A  FEA++ A++LD GI    +    +L +D E
Sbjct: 120 LGRGEITADGEIRDRILAGAFEAVIAAIYLDRGIRATRRFLRQLLIEDAE 169


>gi|343493991|ref|ZP_08732275.1| ribonuclease III [Vibrio nigripulchritudo ATCC 27043]
 gi|342825632|gb|EGU60109.1| ribonuclease III [Vibrio nigripulchritudo ATCC 27043]
          Length = 225

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANSKHNERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGNTLAELGREFDLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSV 925
           +++    G            +A+  EA++GA++LD  I+V             D +   V
Sbjct: 91  EYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEVVRGIVLSWYQTRLDAIQPGV 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|261368258|ref|ZP_05981141.1| ribonuclease III [Subdoligranulum variabile DSM 15176]
 gi|282569773|gb|EFB75308.1| ribonuclease III [Subdoligranulum variabile DSM 15176]
          Length = 225

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 3/106 (2%)

Query: 815 ATESNI--THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAK 872
           A ES +  THNERLEFLGD+V+  + + +LFH   D  EG L   RA++V    L   A+
Sbjct: 33  ANESKVPTTHNERLEFLGDSVLSVVAADYLFHQ-SDRPEGELTRMRASLVSEDALFQFAQ 91

Query: 873 RIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
            I L D++   HG DL         +++ FEA++ AL+LDGG++VA
Sbjct: 92  EIRLGDYLRLGHGEDLGGGRNRPSVVSDAFEAVIAALYLDGGLEVA 137


>gi|407695372|ref|YP_006820160.1| ribonuclease 3 [Alcanivorax dieselolei B5]
 gi|407252710|gb|AFT69817.1| Ribonuclease 3 [Alcanivorax dieselolei B5]
          Length = 228

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 12/136 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDA +  I S  LFH F D  EG L   RA++V+ Q LA +A+ +GL ++++
Sbjct: 36  NNERLEFLGDAQLSQIISTELFHRFTDAAEGQLTRMRASLVRGQTLAEVARELGLGEYLI 95

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS------------VLYKD 929
              G            +A+  EAL+GA+ +DGG D   +V  S             + KD
Sbjct: 96  LGGGELKSGGHRRDSILADTLEALIGAMVIDGGEDACREVVLSWFEARLAAISPQSVRKD 155

Query: 930 NEVRFKQWMYYPQHPL 945
            + R ++W+   ++ L
Sbjct: 156 AKTRLQEWLQARKYEL 171


>gi|418039238|ref|ZP_12677544.1| Ribonuclease III [Lactococcus lactis subsp. cremoris CNCM I-1631]
 gi|354692354|gb|EHE92184.1| Ribonuclease III [Lactococcus lactis subsp. cremoris CNCM I-1631]
          Length = 236

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 17/155 (10%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I +NERLEFLGD  +  + S +L+  +P+  EG L+  R++IV+ + LA+ ++  G  +F
Sbjct: 45  IANNERLEFLGDVALSLVISDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEF 104

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFK 935
           +   HG +     + +  + N FEA +GALF+D G+D   +    V+      D+ V+  
Sbjct: 105 LRLGHGEEKMGGRDRETTLENLFEAFLGALFIDQGMDEVRKFIQHVVIPHVKNDDYVKVI 164

Query: 936 QWMYYPQHPLQ-------------EQEPDGDRQWV 957
            +    Q  LQ             E+ P  DR +V
Sbjct: 165 DYKTELQEVLQIGGETTISYKILKEEGPAHDRSFV 199



 Score = 46.6 bits (109), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 6/65 (9%)

Query: 962  LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLIT 1017
            +LK  + L+   G++FN   LL   FT  S  +TN      + +N+RLEFLGD  L L+ 
Sbjct: 6    MLKLQKKLKNDYGLVFNDEDLLKTAFTHSS--FTNEERLPKIANNERLEFLGDVALSLVI 63

Query: 1018 SDYLY 1022
            SDYLY
Sbjct: 64   SDYLY 68


>gi|312622598|ref|YP_004024211.1| ribonuclease iii [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203065|gb|ADQ46392.1| ribonuclease III [Caldicellulosiruptor kronotskyensis 2002]
          Length = 222

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/117 (35%), Positives = 71/117 (60%)

Query: 810 LGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAH 869
           L  K AT SN    ERLEFLGDA +E   S +LF  FP++ EG L   RAA+V +Q L+ 
Sbjct: 22  LTHKSATHSNKNCYERLEFLGDAALELAVSKYLFVHFPELSEGELTNIRAAVVCSQTLSK 81

Query: 870 LAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           +A+++ L++ +++     +    E K  +A+  EA+ GA+F++ G +  +++  ++L
Sbjct: 82  IAEKLNLKNHIIFGKREKMEKFHENKSILADVVEAIFGAIFIESGFEKLEKIIVNLL 138


>gi|68171854|ref|ZP_00545186.1| Ribonuclease III [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658070|ref|YP_507839.1| ribonuclease III [Ehrlichia chaffeensis str. Arkansas]
 gi|123492713|sp|Q2GFE4.1|RNC_EHRCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|67998723|gb|EAM85443.1| Ribonuclease III [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599527|gb|ABD44996.1| ribonuclease III [Ehrlichia chaffeensis str. Arkansas]
          Length = 226

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 55/95 (57%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           ERLEFLGDAV+  + S  LF++FP   EG LA  + A+V    L  +A+ I L  F++ +
Sbjct: 39  ERLEFLGDAVLNIVISEMLFNIFPKDTEGNLAKKKTALVCGNKLVEVAQSINLGQFIMMS 98

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
            G   C  +     + N  EAL+GA++LDGG   A
Sbjct: 99  DGERACGGINNFRNLENALEALIGAIYLDGGFTAA 133


>gi|406913885|gb|EKD53182.1| hypothetical protein ACD_61C00122G0015 [uncultured bacterium]
          Length = 234

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 53/195 (27%)

Query: 732 RSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIH 791
           ++L+ L+D I Y F+N  LL+ ALTH              R+ L+  GV +         
Sbjct: 4   KNLDPLQDLIGYHFKNESLLETALTH--------------RSCLNQPGVSES-------- 41

Query: 792 FQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEE 851
                                           ERLEFLGDA++E + SI+LF  +PD  E
Sbjct: 42  -------------------------------YERLEFLGDAILEMLISIYLFEKYPDKME 70

Query: 852 GGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFL 911
           G L   R+A V+ + L+ ++      D++  + G ++    +    + +  E+L+GAL++
Sbjct: 71  GYLTAARSATVRTESLSEVSVHNRFNDYIRMSKGEEVTGGRQNLSILEDVIESLIGALYI 130

Query: 912 DGGIDVADQVFSSVL 926
           DGG+D A   F S +
Sbjct: 131 DGGLDAAKNFFESFI 145


>gi|295105981|emb|CBL03524.1| RNAse III [Gordonibacter pamelaeae 7-10-1-b]
          Length = 281

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 1/130 (0%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           ERLEFLGD+++  I +   FH F D++EGGL   + A+V    L+ +A R+G  D +++ 
Sbjct: 48  ERLEFLGDSILGAIVAAIAFHRFHDLDEGGLTRIKVALVSGASLSDVADRLGFADVIVFG 107

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQH 943
                  +  L  A+ N +EA++ AL+LDGGI  A +     L     +   +    P+ 
Sbjct: 108 SSETGTGKRGLHSALENVYEAVVAALYLDGGIGAAQEFVERTLIPRMSLDMAREPENPKS 167

Query: 944 PLQEQ-EPDG 952
            LQE+ + DG
Sbjct: 168 ALQEKLQEDG 177


>gi|404497172|ref|YP_006721278.1| ribonuclease III [Geobacter metallireducens GS-15]
 gi|418066666|ref|ZP_12704026.1| ribonuclease III [Geobacter metallireducens RCH3]
 gi|90101627|sp|Q39T82.1|RNC_GEOMG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|78194775|gb|ABB32542.1| ribonuclease III [Geobacter metallireducens GS-15]
 gi|373560159|gb|EHP86431.1| ribonuclease III [Geobacter metallireducens RCH3]
          Length = 246

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 4/114 (3%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           E  I  NERLEFLGDAV+  +    LF  FP   EG LA  +A++V  + LA LA   GL
Sbjct: 49  EEGIRDNERLEFLGDAVLGLLVGKMLFARFPQSREGVLARMKASLVGEETLAALASARGL 108

Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID----VADQVFSSVL 926
              +L   G +     E +  +AN +EAL+ A++LDGG+     + +Q FS +L
Sbjct: 109 GRHLLLGRGEERSGGRERRSLLANTYEALLAAVYLDGGLGPVERIVEQDFSPLL 162


>gi|222529151|ref|YP_002573033.1| ribonuclease III [Caldicellulosiruptor bescii DSM 6725]
 gi|222455998|gb|ACM60260.1| ribonuclease III [Caldicellulosiruptor bescii DSM 6725]
          Length = 222

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/117 (35%), Positives = 71/117 (60%)

Query: 810 LGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAH 869
           L  K AT SN    ERLEFLGDA +E + S +LF  FP++ EG L   RAA+V +Q L+ 
Sbjct: 22  LTHKSATHSNKNCYERLEFLGDAALELVVSKYLFVHFPELSEGELTNIRAAVVCSQTLSK 81

Query: 870 LAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           +A+++ L++ +++     +    E K  + +  EA+ GA+F++ G +  +++  ++L
Sbjct: 82  IAEKLNLKNHIIFGKREKMEKFHENKSILTDVVEAIFGAIFIESGFEKLEKIIVNLL 138


>gi|448926475|gb|AGE50051.1| RNase III [Acanthocystis turfacea Chlorella virus Canal-1]
          Length = 261

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 67/113 (59%), Gaps = 2/113 (1%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           E N    ERLEFLGD+V+ F+ + +L+ VFP   EG L   R   V  + L+ LA++IGL
Sbjct: 64  EENGETFERLEFLGDSVLGFLIARYLYDVFPGKNEGVLTRLRVKFVSGKLLSKLARQIGL 123

Query: 877 EDFMLYAH-GSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 928
            +F++ +  G   C     K  + + FEAL+GA++LD GI+ A Q   SVL K
Sbjct: 124 HEFIIMSQKGLYRCWHTNPK-TLEDSFEALIGAIYLDLGINAARQFLMSVLTK 175


>gi|307150264|ref|YP_003885648.1| ribonuclease III [Cyanothece sp. PCC 7822]
 gi|306980492|gb|ADN12373.1| ribonuclease III [Cyanothece sp. PCC 7822]
          Length = 228

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 25/163 (15%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDA++ F+    L+  +P + E  L   RA +V    LA  A ++G+ + M 
Sbjct: 32  HNERLEFLGDAILAFVAGEFLYQRYPHLSEAQLTRLRAKLVDETQLARFAVQLGIGELMR 91

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGID------------VAD-------QVF 922
              G+      E    +++ FEA++GA +LD G+D            VAD       +V 
Sbjct: 92  LGKGAIKDGGRENPALLSDTFEAIIGAYYLDAGVDAVRNFVHPLFQSVADILMVSQSEVA 151

Query: 923 SSVLYKDNEVRFKQWMY--YPQHP----LQEQEPDGDRQWVEQ 959
           ++    D + RF+QW    + Q+P    ++E  PD  +++  Q
Sbjct: 152 TTKNLLDAKNRFQQWALAEFSQNPEYIIIEESGPDHAKEFTAQ 194


>gi|386265616|ref|YP_005829108.1| RNase III, dsRNA [Haemophilus influenzae R2846]
 gi|309972852|gb|ADO96053.1| RNase III, dsRNA [Haemophilus influenzae R2846]
          Length = 227

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 16/146 (10%)

Query: 812 RKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLA 871
           R  AT+    HNERLEFLGD+++ F  +  L+H FP   EG L+  RA +V+   LA LA
Sbjct: 28  RSAATQ----HNERLEFLGDSILNFTIAEALYHQFPRCNEGELSRMRATLVREPTLAILA 83

Query: 872 KRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSVLY 927
           ++  L D+M    G         +  +A+C EA++GA+ LD G+ V  QV    +  +L 
Sbjct: 84  RQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSLDQGLAVTTQVIRNWYQQLLA 143

Query: 928 --------KDNEVRFKQWMYYPQHPL 945
                   KD + R ++++     PL
Sbjct: 144 EIKPGDNQKDAKTRLQEYLQGKHLPL 169


>gi|414160536|ref|ZP_11416802.1| ribonuclease 3 [Staphylococcus simulans ACS-120-V-Sch1]
 gi|410878056|gb|EKS25945.1| ribonuclease 3 [Staphylococcus simulans ACS-120-V-Sch1]
          Length = 243

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 60/108 (55%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   S +L+  +P + EG L   RA IV    L   A +I L + 
Sbjct: 52  LAHNERLEFLGDAVLELTVSRYLYDKYPGLPEGNLTKLRATIVCEPSLVIFANKIKLNEL 111

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          +++ FEA +GAL+LD G+DV  Q    V++
Sbjct: 112 ILLGKGEEKTGGRTRPSLVSDAFEAFVGALYLDQGLDVVWQFAQEVIF 159


>gi|291277478|ref|YP_003517250.1| ribonuclease III [Helicobacter mustelae 12198]
 gi|290964672|emb|CBG40527.1| ribonuclease III [Helicobacter mustelae 12198]
          Length = 223

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/110 (37%), Positives = 67/110 (60%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           N  +NERLE+LGDAV++ +    L+  FP+ +EG L+  RAA+V  Q     AK I L+D
Sbjct: 29  NKKNNERLEYLGDAVLDLLIGEFLYQEFPEHKEGDLSKMRAALVNEQSFMRFAKAIHLQD 88

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 928
           F+L +   +     E    +++ FEAL+GA++L+ G++ A  +   +L+K
Sbjct: 89  FILISSNEETNQGREKPSILSSAFEALIGAVYLEAGLERAKDITYHLLHK 138


>gi|376297527|ref|YP_005168757.1| ribonuclease III [Desulfovibrio desulfuricans ND132]
 gi|323460089|gb|EGB15954.1| ribonuclease III [Desulfovibrio desulfuricans ND132]
          Length = 227

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/96 (43%), Positives = 58/96 (60%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S   F  +P   EG L   R+ +V+ Q LA +A+ + L+ F+  
Sbjct: 39  NERLEFLGDAVLELCISEEGFKRYPTAHEGQLTRIRSQLVKEQSLAGIARELELDRFIRL 98

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
             G +L    E    +A+ FEAL+GA+FLDGG + A
Sbjct: 99  GRGEELQGGRERDALLADAFEALLGAVFLDGGFEAA 134


>gi|284032688|ref|YP_003382619.1| ribonuclease III [Kribbella flavida DSM 17836]
 gi|283811981|gb|ADB33820.1| ribonuclease III [Kribbella flavida DSM 17836]
          Length = 249

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/104 (39%), Positives = 63/104 (60%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGD+V+  I +  LF   PD+ EG LA  RAA+V  + LA +A+ + L  ++  
Sbjct: 51  NERLEFLGDSVLGVIVTESLFRNHPDLSEGRLAKLRAAVVNMRALAGVARDLKLGKYLRL 110

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
             G +     +    +A+C EAL+GA++LD G +VA +V  ++ 
Sbjct: 111 GRGEEATGGRDKSSILADCVEALIGAVYLDRGFEVAGRVVHTLF 154



 Score = 45.1 bits (105), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/41 (51%), Positives = 28/41 (68%)

Query: 982  LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            LL   FT RS  Y N  L +N+RLEFLGD+VL +I ++ L+
Sbjct: 31   LLEHAFTHRSFAYENGGLPTNERLEFLGDSVLGVIVTESLF 71


>gi|226322326|ref|ZP_03797844.1| hypothetical protein COPCOM_00087 [Coprococcus comes ATCC 27758]
 gi|225209248|gb|EEG91602.1| ribonuclease III [Coprococcus comes ATCC 27758]
          Length = 252

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 53/226 (23%)

Query: 732 RSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIH 791
           R++  LE++I Y F++ +LL+ A+TH SY      N  H + +  +C             
Sbjct: 24  RNVKELEEKIGYNFKDSHLLRHAVTHSSY-----VNEKHMKKA--DC------------- 63

Query: 792 FQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEE 851
                                          NERLEFLGDAV+E I+S +LF     + E
Sbjct: 64  -------------------------------NERLEFLGDAVLELISSEYLFFENQTMPE 92

Query: 852 GGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFL 911
           G L   RA++V  + LA  A+ + L  ++L   G D       +   ++  EAL+GA++L
Sbjct: 93  GELTKLRASMVCEKALAFCARDLELGSYLLLGKGEDATGGRFRESITSDALEALIGAIYL 152

Query: 912 DGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWV 957
           DGG   A +    + Y  N++  K+  Y  +  LQE    G  + +
Sbjct: 153 DGGFANAKEFI--LKYILNDLEGKRLFYDSKTILQEMVQGGQEKGI 196


>gi|260899641|ref|ZP_05908036.1| ribonuclease III [Vibrio parahaemolyticus AQ4037]
 gi|308110559|gb|EFO48099.1| ribonuclease III [Vibrio parahaemolyticus AQ4037]
          Length = 225

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANSKHNERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGHTLAELGREFDLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY---------- 927
           D++    G            +A+  EA++GA++LD  I+    +  S  Y          
Sbjct: 91  DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEKVRSIVLSWYYSRLEAIKPGV 150

Query: 928 --KDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|429759937|ref|ZP_19292431.1| ribonuclease III [Veillonella atypica KON]
 gi|429178809|gb|EKY20075.1| ribonuclease III [Veillonella atypica KON]
          Length = 247

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/93 (40%), Positives = 59/93 (63%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           +I HN+RLEFLGDAV++ I   +LF  +PD+ EG L   +AA V    LA +++ + L D
Sbjct: 54  HIHHNQRLEFLGDAVLDLIIGEYLFTTYPDMSEGNLTKIKAATVCEDSLATVSRTLHLGD 113

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFL 911
           ++L  HG       + K  +A+ FE+L+GAL++
Sbjct: 114 YLLLGHGEKSSGGSDRKSILADTFESLIGALYI 146


>gi|303229664|ref|ZP_07316452.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a]
 gi|302515789|gb|EFL57743.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a]
          Length = 247

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/93 (40%), Positives = 59/93 (63%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           +I HN+RLEFLGDAV++ I   +LF  +PD+ EG L   +AA V    LA +++ + L D
Sbjct: 54  HIHHNQRLEFLGDAVLDLIIGEYLFTTYPDMSEGNLTKIKAATVCEDSLATVSRTLHLGD 113

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFL 911
           ++L  HG       + K  +A+ FE+L+GAL++
Sbjct: 114 YLLLGHGEKSSGGSDRKSILADTFESLIGALYI 146


>gi|295094866|emb|CBK83957.1| RNAse III [Coprococcus sp. ART55/1]
          Length = 229

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 63/211 (29%), Positives = 91/211 (43%), Gaps = 53/211 (25%)

Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
           LE RI Y+F++  LL  ALTH S+      N                             
Sbjct: 8   LEKRIGYEFKDIRLLITALTHTSFANELKVN----------------------------- 38

Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
                              TES     ERLEFLGDA++E+I S +LF    + EEG L  
Sbjct: 39  ------------------KTESY----ERLEFLGDAILEYIVSDYLFRKKREYEEGKLTK 76

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            RA++V    L+ +++ +G   F+L + G         K  + + FE+++GA++LDGG+D
Sbjct: 77  LRASLVCEFTLSQISESLGYGKFVLLSKGEAQTGGRTRKSILCDLFESVLGAMYLDGGMD 136

Query: 917 VADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
           VA +     L  D E   K   Y  +  LQE
Sbjct: 137 VAKKFVHQFLLDDVET--KSLFYDAKSTLQE 165


>gi|152995275|ref|YP_001340110.1| ribonuclease III [Marinomonas sp. MWYL1]
 gi|189043327|sp|A6VUP6.1|RNC_MARMS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|150836199|gb|ABR70175.1| Ribonuclease III [Marinomonas sp. MWYL1]
          Length = 227

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 74/140 (52%), Gaps = 12/140 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ ++ +  LFH FP  +EG L+  RA++V+   LA LA+   L D++ 
Sbjct: 35  NNERLEFLGDSILNYVIAEDLFHRFPKAKEGELSRLRASLVKGDTLAELAREFELGDYLK 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLYKD 929
              G            +A+  E ++GA++LD G+DV             D     ++ KD
Sbjct: 95  LGAGELKSGGFRRDSILADTVEGIIGAMYLDAGMDVCRQHILAWYKERLDATSLKIVTKD 154

Query: 930 NEVRFKQWMYYPQHPLQEQE 949
            + R ++++   +H L + +
Sbjct: 155 AKTRLQEFLQARKHALPQYD 174


>gi|225570731|ref|ZP_03779754.1| hypothetical protein CLOHYLEM_06832 [Clostridium hylemonae DSM
           15053]
 gi|225160474|gb|EEG73093.1| hypothetical protein CLOHYLEM_06832 [Clostridium hylemonae DSM
           15053]
          Length = 231

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 19/152 (12%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E ++S  LF+    + EG L   RA++V    LA  A+ + + DF+L 
Sbjct: 43  NERLEFLGDAVLELVSSEFLFYEHAKMPEGELTKTRASMVCEPALAFCARELQIGDFLLL 102

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVR--------- 933
             G D     + +   ++  EAL+GA+++DGG   A +     + KD E R         
Sbjct: 103 GKGEDATGGRKRESITSDAMEALIGAIYIDGGFANAKEFIERFILKDLENRKLFFDSKTI 162

Query: 934 --------FKQWMYYPQHPLQEQEPDGDRQWV 957
                   FK  + Y  H + E+ PD D+ ++
Sbjct: 163 LQEIVQANFKDAITY--HLIGEEGPDHDKSFL 192


>gi|171909524|ref|ZP_02924994.1| putative Ribonuclease III [Verrucomicrobium spinosum DSM 4136]
          Length = 238

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 52/183 (28%)

Query: 734 LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
           ++ LE RI Y+F+   LLQ ALTHPS        P  ++N         P+         
Sbjct: 1   MDSLESRIAYQFKQPELLQEALTHPSL-------PYESKN---------PQ--------- 35

Query: 794 NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
                                       HN+RLE+LGDAV++ + S  ++H FP  +EG 
Sbjct: 36  ---------------------------RHNQRLEYLGDAVLQLVLSEAIYHQFPLDDEGL 68

Query: 854 LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
           L   R  +VQ + LAH+A+++ L   +L   G +       +  +A+  E+++GA++LDG
Sbjct: 69  LTKLRTRLVQTRTLAHIARQLCLGRDLLLGKGEESNGGRSRESTLADVMESIIGAVYLDG 128

Query: 914 GID 916
           GI+
Sbjct: 129 GIE 131


>gi|451812308|ref|YP_007448762.1| ribonuclease III [Candidatus Kinetoplastibacterium galatii TCC219]
 gi|451778210|gb|AGF49158.1| ribonuclease III [Candidatus Kinetoplastibacterium galatii TCC219]
          Length = 240

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 54/91 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+V+ F  +I LF  + D++EGGL+  RA++VQ   LA +A  + L  ++ 
Sbjct: 33  HNERLEFLGDSVLNFAITIFLFEKYSDVDEGGLSRLRASLVQQNSLATIASELNLSRYLK 92

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLD 912
              G            +A+C EA+ GA+F D
Sbjct: 93  LGEGELKSGGCNRPSILADCLEAIFGAIFKD 123


>gi|303231076|ref|ZP_07317816.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6]
 gi|401679475|ref|ZP_10811402.1| ribonuclease III [Veillonella sp. ACP1]
 gi|302514207|gb|EFL56209.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6]
 gi|400219409|gb|EJO50277.1| ribonuclease III [Veillonella sp. ACP1]
          Length = 247

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/93 (40%), Positives = 59/93 (63%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           +I HN+RLEFLGDAV++ I   +LF  +PD+ EG L   +AA V    LA +++ + L D
Sbjct: 54  HIHHNQRLEFLGDAVLDLIIGEYLFTTYPDMSEGNLTKIKAATVCEDSLATVSRTLHLGD 113

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFL 911
           ++L  HG       + K  +A+ FE+L+GAL++
Sbjct: 114 YLLLGHGEKSSGGSDRKSILADTFESLIGALYI 146


>gi|229918600|ref|YP_002887246.1| ribonuclease III [Exiguobacterium sp. AT1b]
 gi|229470029|gb|ACQ71801.1| ribonuclease III [Exiguobacterium sp. AT1b]
          Length = 259

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/109 (41%), Positives = 62/109 (56%), Gaps = 5/109 (4%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S  L+  +P+  EG L   RAAIV    L + A+     DF+L 
Sbjct: 68  NERLEFLGDAVLELTVSRFLYETYPERSEGELTKLRAAIVCEPSLVNFAEAFAFSDFILL 127

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGID-----VADQVFSSVL 926
             G +L    +    +A+ FE+ +GAL+LD GI+     +A+ VF  VL
Sbjct: 128 GKGEELTGGRKRPALLADVFESYIGALYLDQGIEAVERFLAEAVFPKVL 176



 Score = 40.0 bits (92), Expect = 7.2,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)

Query: 962  LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG---SNQRLEFLGDTVLQLITS 1018
            +L+  + LE    V F++  LL + FT  S  Y N   G    N+RLEFLGD VL+L  S
Sbjct: 27   ILELFKSLEERLDVQFSNHDLLMQAFTHSS--YVNEQRGLRKDNERLEFLGDAVLELTVS 84

Query: 1019 DYLY 1022
             +LY
Sbjct: 85   RFLY 88


>gi|373106118|ref|ZP_09520422.1| ribonuclease III [Stomatobaculum longum]
 gi|371653214|gb|EHO18618.1| ribonuclease III [Stomatobaculum longum]
          Length = 235

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/216 (26%), Positives = 95/216 (43%), Gaps = 53/216 (24%)

Query: 733 SLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHF 792
           ++  LE +I Y F++R LL LALTH S+      N  H+                     
Sbjct: 5   TIEALEGKIGYTFRDRSLLVLALTHTSF-----ANEAHS--------------------- 38

Query: 793 QNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEG 852
                                     ++  NERLEFLGDAV+E ++S   +   P + EG
Sbjct: 39  -------------------------GHLGSNERLEFLGDAVLELVSSDFFYREKPKLSEG 73

Query: 853 GLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLD 912
            L   RA+ V    LA+ A++I L  ++L   G ++         +++  EA++GA++LD
Sbjct: 74  ELTKLRASFVCEPALAYCAEQIPLPPYLLLGRGEEMTGGRLRPSIVSDAMEAVIGAIYLD 133

Query: 913 GGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQ 948
           GG+  A       +   N++  K++ Y  +  LQE+
Sbjct: 134 GGLTPARAYIDRFIL--NDIEGKRYFYDAKTILQEE 167



 Score = 44.3 bits (103), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 964  KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT--LGSNQRLEFLGDTVLQLITSDYL 1021
            + ++ LE   G  F    LL    T  S      +  LGSN+RLEFLGD VL+L++SD+ 
Sbjct: 4    ETIEALEGKIGYTFRDRSLLVLALTHTSFANEAHSGHLGSNERLEFLGDAVLELVSSDFF 63

Query: 1022 Y 1022
            Y
Sbjct: 64   Y 64


>gi|254230524|ref|ZP_04923895.1| ribonuclease III [Vibrio sp. Ex25]
 gi|262393270|ref|YP_003285124.1| ribonuclease III [Vibrio sp. Ex25]
 gi|451972098|ref|ZP_21925310.1| ribonuclease III [Vibrio alginolyticus E0666]
 gi|151936949|gb|EDN55836.1| ribonuclease III [Vibrio sp. Ex25]
 gi|262336864|gb|ACY50659.1| ribonuclease III [Vibrio sp. Ex25]
 gi|451931936|gb|EMD79618.1| ribonuclease III [Vibrio alginolyticus E0666]
          Length = 225

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANSKHNERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGHTLAELGREFDLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS------------V 925
           D++    G            +A+  EA++GA++LD  ++V   +  S            V
Sbjct: 91  DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDLEVVRGIVLSWYNSRLEAIKPGV 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|259046634|ref|ZP_05737035.1| ribonuclease III [Granulicatella adiacens ATCC 49175]
 gi|259036799|gb|EEW38054.1| ribonuclease III [Granulicatella adiacens ATCC 49175]
          Length = 236

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 59/105 (56%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NER+EFLGDAV+E   S  LF  FP  +EG L   RA IV    L+ LAK   L +++L
Sbjct: 45  YNERIEFLGDAVLELTISDWLFRQFPHFQEGQLTKLRAQIVCEDSLSLLAKECSLNEYLL 104

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
              G  L    E    + + FEA +GAL+LD G++   +  + V+
Sbjct: 105 LGKGETLSGGREKPAILCDVFEAFIGALYLDKGVNEVQRFLNLVV 149


>gi|77165916|ref|YP_344441.1| ribonuclease III [Nitrosococcus oceani ATCC 19707]
 gi|254434280|ref|ZP_05047788.1| ribonuclease III [Nitrosococcus oceani AFC27]
 gi|90101630|sp|Q3J8D5.1|RNC_NITOC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|76884230|gb|ABA58911.1| RNAse III [Nitrosococcus oceani ATCC 19707]
 gi|207090613|gb|EDZ67884.1| ribonuclease III [Nitrosococcus oceani AFC27]
          Length = 233

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 81/149 (54%), Gaps = 17/149 (11%)

Query: 813 KVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAK 872
           + AT+ N   NERLEFLGD+++ F+ +  L+  FP  +EG L+  RA +V+ + LA LA+
Sbjct: 29  RSATKEN---NERLEFLGDSILNFLIADFLYSGFPRAQEGELSRLRATLVKGETLAELAR 85

Query: 873 RIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL------ 926
            + + D ++   G            +A+ FEA++GA++LDGG++   ++ SS+       
Sbjct: 86  ELEIGDHLILGLGELKSGGYRRTSILADAFEAVIGAVYLDGGLEACRKLVSSLYRDRLET 145

Query: 927 --------YKDNEVRFKQWMYYPQHPLQE 947
                    KD + R ++++   Q PL +
Sbjct: 146 LTNEALLNLKDPKTRLQEYLQARQFPLPD 174


>gi|410479646|ref|YP_006767283.1| dsRNA-specific ribonuclease [Leptospirillum ferriphilum ML-04]
 gi|406774898|gb|AFS54323.1| dsRNA-specific ribonuclease [Leptospirillum ferriphilum ML-04]
          Length = 247

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 50/191 (26%)

Query: 728 LRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGD 787
           ++ HR L+ LEDR++Y+F+   LL+ A TH S+                           
Sbjct: 1   MKPHRDLSELEDRLRYRFRKIDLLEEATTHKSFMNE------------------------ 36

Query: 788 RRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFP 847
                                  GR++    N   NERLEFLGD V+  + + +L   +P
Sbjct: 37  -----------------------GRRLGVTQN---NERLEFLGDTVLGLVVAEYLMVTYP 70

Query: 848 DIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMG 907
              EG L+ ++  +V    LA +++ +G+  F+L   G +L    E    +A+  EA++ 
Sbjct: 71  KYPEGILSKFKGRVVSEPTLASVSRALGIGGFLLIGKGEELTQGREKSSLLADAMEAVIA 130

Query: 908 ALFLDGGIDVA 918
           A++LD G+D A
Sbjct: 131 AIYLDSGLDAA 141


>gi|270156955|ref|ZP_06185612.1| ribonuclease III [Legionella longbeachae D-4968]
 gi|289164621|ref|YP_003454759.1| ribonuclease III [Legionella longbeachae NSW150]
 gi|269988980|gb|EEZ95234.1| ribonuclease III [Legionella longbeachae D-4968]
 gi|288857794|emb|CBJ11638.1| putative ribonuclease III [Legionella longbeachae NSW150]
          Length = 227

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 12/136 (8%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           ER EFLGD+++ F+ +  LFH FP   EG L+  R+ +V+ + L  LAK I L DF+   
Sbjct: 37  ERFEFLGDSILSFVIANELFHRFPLQSEGQLSRLRSFLVRGEMLVELAKEIELGDFLFLG 96

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL------------YKDNE 931
            G            +++  EA+  A+FLDGGID A +V   +              KD +
Sbjct: 97  QGELKSGGFRRASILSDALEAVFAAVFLDGGIDCAKEVILKLYRIRLESPNLNDCLKDAK 156

Query: 932 VRFKQWMYYPQHPLQE 947
            + ++++   + PL E
Sbjct: 157 TQLQEYLQAEKIPLPE 172


>gi|91227852|ref|ZP_01262025.1| ribonuclease III [Vibrio alginolyticus 12G01]
 gi|269965785|ref|ZP_06179882.1| Ribonuclease 3 [Vibrio alginolyticus 40B]
 gi|91188362|gb|EAS74658.1| ribonuclease III [Vibrio alginolyticus 12G01]
 gi|269829653|gb|EEZ83890.1| Ribonuclease 3 [Vibrio alginolyticus 40B]
          Length = 225

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANSKHNERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGHTLAELGREFDLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS------------V 925
           D++    G            +A+  EA++GA++LD  ++V   +  S            V
Sbjct: 91  DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDLEVVRGIVLSWYQSRLEAIKPGV 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|445059847|ref|YP_007385251.1| ribonuclease III [Staphylococcus warneri SG1]
 gi|443425904|gb|AGC90807.1| ribonuclease III [Staphylococcus warneri SG1]
          Length = 242

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 56/99 (56%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   S +LF   PD+ EG L   RA IV    L   A +I L + 
Sbjct: 52  LDHNERLEFLGDAVLELTVSRYLFDKHPDLPEGNLTKMRATIVCEPSLVIFANKIKLNEL 111

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
           +L   G +          +++ FEA +GAL+LD G+D+ 
Sbjct: 112 ILLGKGEEKTGGRTRPSLISDAFEAFVGALYLDQGLDIV 150


>gi|393758412|ref|ZP_10347233.1| ribonuclease III [Alcaligenes faecalis subsp. faecalis NCIB 8687]
 gi|393164831|gb|EJC64883.1| ribonuclease III [Alcaligenes faecalis subsp. faecalis NCIB 8687]
          Length = 252

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/104 (39%), Positives = 58/104 (55%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+V+ F  +  LF  F  I+EG L+  RA +V+   LA +A R+GL D++ 
Sbjct: 34  HNERLEFLGDSVLNFTVAALLFERFQRIDEGDLSRLRANLVKQAALAEIATRLGLSDYLR 93

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSV 925
              G            +A+  EA+ GA+FLD G   A  V + +
Sbjct: 94  LGEGELKSGGFRRPSILADALEAIFGAVFLDAGFTQAQTVITQL 137


>gi|406575185|ref|ZP_11050895.1| ribonuclease III [Janibacter hoylei PVAS-1]
 gi|404555366|gb|EKA60858.1| ribonuclease III [Janibacter hoylei PVAS-1]
          Length = 248

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 4/111 (3%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGD+V+  + + HL    PD+ EG LA  RAA+V  + LA +A+ IGL DF
Sbjct: 48  LPHNERLEFLGDSVLGLVVTDHLHSTHPDLSEGELAKLRAAVVNMRALAEVARTIGLGDF 107

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDG----GIDVADQVFSSVL 926
           +    G +     +    +A+  EA++GA++L      G+D A  +  S+L
Sbjct: 108 VSLGRGEETTGGRDKNSILADTVEAVIGAVYLSTPKPRGLDAAGLLVHSLL 158



 Score = 50.4 bits (119), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 953  DRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTV 1012
            DR   +Q P+ +  +YL   +G   +   LL R  T RS  Y N  L  N+RLEFLGD+V
Sbjct: 3    DRTSPQQRPVEELSRYLTEVTGEPVDE-PLLTRALTHRSYSYENGGLPHNERLEFLGDSV 61

Query: 1013 LQLITSDYLY 1022
            L L+ +D+L+
Sbjct: 62   LGLVVTDHLH 71


>gi|407977619|ref|ZP_11158456.1| ribonuclease III [Bacillus sp. HYC-10]
 gi|407415872|gb|EKF37453.1| ribonuclease III [Bacillus sp. HYC-10]
          Length = 247

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/131 (36%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S  LF  +P + EG L   RAAIV    L  LA  +   D +L 
Sbjct: 56  NERLEFLGDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLL 115

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    +    +A+ FEA +GAL+LD G++  +Q   + +Y K N+  F   M + 
Sbjct: 116 GKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEPVEQFLEAYVYPKINDGAFSHVMDFK 175

Query: 942 QHPLQEQEPDG 952
               +  + DG
Sbjct: 176 SQLQEFVQRDG 186


>gi|83858196|ref|ZP_00951718.1| ribonuclease III [Oceanicaulis sp. HTCC2633]
 gi|83853019|gb|EAP90871.1| ribonuclease III [Oceanicaulis sp. HTCC2633]
          Length = 228

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/188 (30%), Positives = 82/188 (43%), Gaps = 53/188 (28%)

Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
            E RI Y+F++R LL+ ALTH S+                         GD R       
Sbjct: 8   FEARINYRFKDRELLERALTHASH-------------------------GDGR------- 35

Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
                                S    NERLEFLGD V+  + S  L+  FP++EEGGLA 
Sbjct: 36  ---------------------SRAASNERLEFLGDRVLGLMASQRLYETFPNLEEGGLAQ 74

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
              A+V     A  A+R  L + +  +   +     E +  +A+  EA++GAL+LDGG+D
Sbjct: 75  RLNAVVNKSACARAARRCDLGEGLRLSAAEERLGGREKESIIADACEAVIGALYLDGGLD 134

Query: 917 VADQVFSS 924
            A   F++
Sbjct: 135 AAWAFFTT 142


>gi|110598670|ref|ZP_01386935.1| Ribonuclease III [Chlorobium ferrooxidans DSM 13031]
 gi|110339723|gb|EAT58233.1| Ribonuclease III [Chlorobium ferrooxidans DSM 13031]
          Length = 270

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 62/105 (59%)

Query: 815 ATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI 874
           AT+  +  N+RLEFLGD+V+  + S +LF  FP   EG L++ R+ IV  + LA  A  +
Sbjct: 67  ATQHLVESNQRLEFLGDSVLGLLISDYLFRTFPGSAEGELSSNRSKIVNRKSLAGFAASM 126

Query: 875 GLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVAD 919
            L D++L    +D         A+A+ FE+L GA++LD GI  A+
Sbjct: 127 NLADYLLTGESADRNKITSSDSALADAFESLTGAIYLDKGILAAE 171



 Score = 42.7 bits (99), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 5/77 (6%)

Query: 951  DGDRQWVEQSPLL--KQLQYLEYSSGVIFNHIRLLARVFTTRSMGY---TNLTLGSNQRL 1005
            DG     E  P L  + + YL    G   +++ L     T RS+ +   T   + SNQRL
Sbjct: 19   DGGNGSNETVPALSAETIAYLRRLVGEPASNLLLYQTALTHRSVVHDPATQHLVESNQRL 78

Query: 1006 EFLGDTVLQLITSDYLY 1022
            EFLGD+VL L+ SDYL+
Sbjct: 79   EFLGDSVLGLLISDYLF 95


>gi|390565713|ref|ZP_10246331.1| Ribonuclease 3 [Nitrolancetus hollandicus Lb]
 gi|390171040|emb|CCF85668.1| Ribonuclease 3 [Nitrolancetus hollandicus Lb]
          Length = 258

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/109 (36%), Positives = 63/109 (57%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGD+V+  I +  LF  +P + EG L  YR A+V+ + LA+ A++ GL++ +  
Sbjct: 60  NERLEFLGDSVLGMIAAEFLFDRYPRVPEGTLTAYRTALVRTETLAYWARQFGLDELLYL 119

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
             G            +A  FEA++ A+++D GI  A +   ++L KD E
Sbjct: 120 GRGETTADGEVRDRILAGAFEAVIAAIYMDRGIRGARRFLRALLNKDAE 168


>gi|257870561|ref|ZP_05650214.1| ribonuclease III [Enterococcus gallinarum EG2]
 gi|357049077|ref|ZP_09110306.1| ribonuclease 3 [Enterococcus saccharolyticus 30_1]
 gi|257804725|gb|EEV33547.1| ribonuclease III [Enterococcus gallinarum EG2]
 gi|355384377|gb|EHG31445.1| ribonuclease 3 [Enterococcus saccharolyticus 30_1]
          Length = 230

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 64/109 (58%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           +++ NERLEFLGDAV+E I S +L+   PD+ EG L   RAAIV+   L+  AK    + 
Sbjct: 40  HLSDNERLEFLGDAVLELIVSRYLYRELPDLPEGKLTKLRAAIVREDSLSMFAKDCRFDQ 99

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           ++    G +     +    + + FEA +GAL+LD G++  D   ++V++
Sbjct: 100 YIRLGKGEENSGGRKRPSLLCDLFEAFLGALYLDQGLESVDGFLTAVVF 148



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 34/51 (66%), Gaps = 2/51 (3%)

Query: 974  GVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            G++F+ + LL + FT  S    + NL L  N+RLEFLGD VL+LI S YLY
Sbjct: 14   GIVFHDVDLLEQAFTHSSYVNEHRNLHLSDNERLEFLGDAVLELIVSRYLY 64


>gi|414154272|ref|ZP_11410591.1| Ribonuclease 3 [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
 gi|411454063|emb|CCO08495.1| Ribonuclease 3 [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
          Length = 249

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 61/108 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
            I HN+RLEFLGDAV+E + S  L+ +FPD  EG L   RAA V    LA  A+ + L  
Sbjct: 45  GIYHNQRLEFLGDAVLELVVSEELYRMFPDRTEGELTKMRAASVCEPSLAKAARELDLGR 104

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
            +    G +     E    +A+ FEAL+GA++LD G++ A +   S L
Sbjct: 105 CLRMGRGEERSGGRERPSILADAFEALLGAIYLDQGLEEARRFVLSCL 152


>gi|319946572|ref|ZP_08020806.1| ribonuclease III [Streptococcus australis ATCC 700641]
 gi|319746620|gb|EFV98879.1| ribonuclease III [Streptococcus australis ATCC 700641]
          Length = 241

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 1/122 (0%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I+HNERLEFLGDA+++ + S +LF ++P   EG L+  R+ IV+ + LA  ++  G + F
Sbjct: 48  ISHNERLEFLGDAILQLVISEYLFALYPSKPEGDLSKMRSMIVREESLAGFSRDCGFDQF 107

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWM 938
           +    G +          + + FEA +GAL LD G++        V+    E  +F+Q +
Sbjct: 108 IKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGVETVRDFIQQVMIPKVEAGQFEQVI 167

Query: 939 YY 940
            Y
Sbjct: 168 DY 169



 Score = 42.4 bits (98), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 6/50 (12%)

Query: 977  FNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            F+   LL   FT  S  Y N    L +  N+RLEFLGD +LQL+ S+YL+
Sbjct: 24   FDDTELLETAFTHTS--YANEHRLLKISHNERLEFLGDAILQLVISEYLF 71


>gi|51245097|ref|YP_064981.1| ribonuclease III [Desulfotalea psychrophila LSv54]
 gi|81642476|sp|Q6ANV0.1|RNC_DESPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|50876134|emb|CAG35974.1| related to ribonuclease III [Desulfotalea psychrophila LSv54]
          Length = 241

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 58/95 (61%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEF+GDAV++ +    L+  FP++ EG L   RAA+V   HLA +A++I L  F+ 
Sbjct: 52  NNERLEFVGDAVLDLVVGNALYRRFPEMREGELTRLRAALVNEGHLATMARKINLGYFLC 111

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
              G D     E    ++  +EA++GA+F DGG D
Sbjct: 112 LGKGEDNSKGREKSSILSCAYEAVIGAIFQDGGYD 146


>gi|383826402|ref|ZP_09981529.1| ribonuclease III [Mycobacterium xenopi RIVM700367]
 gi|383332702|gb|EID11177.1| ribonuclease III [Mycobacterium xenopi RIVM700367]
          Length = 230

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 60/102 (58%), Gaps = 3/102 (2%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI---GLEDF 879
           NERLEFLGDAV+    +  LFH  PD  EG LA  RA++V  Q LA +A+++   GL  +
Sbjct: 40  NERLEFLGDAVLGLTVTDELFHRHPDRSEGDLAKLRASVVNTQALADVARKLTDQGLGAY 99

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           ML   G       +    +A+  E+L+GA++L  GID A +V
Sbjct: 100 MLLGRGEANTGGADKSSILADGMESLLGAVYLHHGIDTAREV 141


>gi|163802958|ref|ZP_02196845.1| ribonuclease III [Vibrio sp. AND4]
 gi|159173248|gb|EDP58076.1| ribonuclease III [Vibrio sp. AND4]
          Length = 226

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANSKHNERLEFLGDSILSFVIADELYHRFPKVNEGDMSRMRATLVRGHTLAELGREFDLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS------------V 925
           D++    G            +A+  EA++GA++LD  I+    +  S            V
Sbjct: 91  DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEAVRGIVLSWYHSRLEAIKPGV 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|58617572|ref|YP_196771.1| ribonuclease III [Ehrlichia ruminantium str. Gardel]
 gi|75432734|sp|Q5FGH0.1|RNC_EHRRG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|58417184|emb|CAI28297.1| Ribonuclease III [Ehrlichia ruminantium str. Gardel]
          Length = 227

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 87/201 (43%), Gaps = 54/201 (26%)

Query: 735 NVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQN 794
           N +   I+Y F+N  LL  ALTHPS                                   
Sbjct: 4   NAISKIIKYDFKNTQLLNEALTHPS----------------------------------- 28

Query: 795 TRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGL 854
                      ++SK       ++N  + ERLEFLGDAV+  + S  LF++FP   EG L
Sbjct: 29  -----------VLSK-------DNNNFNYERLEFLGDAVLNLVVSEMLFNIFPYDTEGNL 70

Query: 855 ATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGG 914
           A  + A+V    L  +A+ I L  F++ + G   C      + + N  EAL+GA++LDGG
Sbjct: 71  AKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGG 130

Query: 915 IDVADQVFSSVLYKDNEVRFK 935
           +  A   F  + +K++    K
Sbjct: 131 LKAAKD-FIFLFWKNSATHMK 150


>gi|403667654|ref|ZP_10932954.1| ribonuclease 3 [Kurthia sp. JC8E]
          Length = 248

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 78/164 (47%), Gaps = 10/164 (6%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S  LF  FP + EG L   RAAIV    L   A  +   +F+L 
Sbjct: 59  NERLEFLGDAVLELTVSKFLFLKFPKMTEGQLTKLRAAIVCEPALVIFANELKFGEFVLL 118

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWMYYP 941
             G +     E    +A+CFEA +GAL+LD G++        V++   E+  F   M + 
Sbjct: 119 GKGEENTGGRERPALLADCFEAFVGALYLDQGLETVVGFLGKVVFPKVELGMFSDVMDFK 178

Query: 942 Q--HPLQEQEPDGDRQWV---EQSPLLKQLQYLEYSSGVIFNHI 980
                L +Q   G  Q+    E  P  K+     + S VI N +
Sbjct: 179 SQLQELVQQTSSGSLQYAIVKENGPAHKR----TFVSQVILNDV 218


>gi|375266665|ref|YP_005024108.1| ribonuclease III [Vibrio sp. EJY3]
 gi|369841985|gb|AEX23129.1| ribonuclease III [Vibrio sp. EJY3]
          Length = 225

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANSKHNERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGHTLAELGREFDLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS------------V 925
           D++    G            +A+  EA++GA++LD  I+    +  S            V
Sbjct: 91  DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEAVRGIVLSWYKSRLEAIKPGV 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|315640113|ref|ZP_07895235.1| ribonuclease III [Enterococcus italicus DSM 15952]
 gi|315484090|gb|EFU74564.1| ribonuclease III [Enterococcus italicus DSM 15952]
          Length = 233

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 63/108 (58%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           ++ NERLEFLGDAV+E + S +L+  FP+I EG L   RA++V+   LA  A+  G + +
Sbjct: 44  LSDNERLEFLGDAVLELLVSQYLYRKFPEIPEGKLTKLRASMVREDSLAEFARECGFDQY 103

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +    G +     +    + + FE+ +GAL+LD  ++  +Q    V++
Sbjct: 104 IRLGKGEENSGGRQRNSLLCDLFESFLGALYLDQELEAVNQFLKKVVF 151



 Score = 48.9 bits (115), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 975  VIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            ++F  I LL + FT  S    + N+ L  N+RLEFLGD VL+L+ S YLY
Sbjct: 18   IVFQEIGLLEQAFTHSSYVNEHRNMALSDNERLEFLGDAVLELLVSQYLY 67


>gi|67525463|ref|XP_660793.1| hypothetical protein AN3189.2 [Aspergillus nidulans FGSC A4]
 gi|40743766|gb|EAA62953.1| hypothetical protein AN3189.2 [Aspergillus nidulans FGSC A4]
          Length = 1726

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 151/377 (40%), Gaps = 60/377 (15%)

Query: 686  MRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKF 745
            ++ N   +  + V  S R   R G++ D  ++  L   LI     +RS ++  +   Y  
Sbjct: 1050 LKKNQGHEPAIQVFSSQRPLDRMGVVRDRSRYGEL---LIFKRWLNRSGDLELECDPYPS 1106

Query: 746  QNRYLLQ---LALTHPSYRENFGTNPDHARNSLSNCGVRQ------------PEYGDRRI 790
            + R LLQ   LA   P+  E  G+       S S+C + +            P   DR  
Sbjct: 1107 KRRNLLQRQTLAKKRPAEDEILGSPTKKRILSASHCTIDRLPASETVFGRFIPVILDRLE 1166

Query: 791  HFQNTRKRGINTLINIMSKLGRKVATESNI------THNERLEFLGDAVVEFITSIHLFH 844
                  +     L +I  +  R V T   +      T  +R EF GD+V++F  +  LF+
Sbjct: 1167 AALVATRLCETVLRDIQFQDLRHVITAITMPLAQAPTDYQRYEFFGDSVLKFTVAASLFY 1226

Query: 845  VFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM------------------LYAHGS 886
              P+  EG L     A+VQN  L   A   GL+ ++                  LYA  S
Sbjct: 1227 NNPNWHEGYLTETLHALVQNARLTRAALDQGLDAYIISNRFTPRKWSAPLISEKLYASAS 1286

Query: 887  DLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQH--P 944
                  ++   +A+  EAL+GA ++DGG+  A             VRF   +  P+   P
Sbjct: 1287 TRSMSAKV---LADVVEALIGAAYIDGGLHKAQSCI---------VRFLPEIELPETKLP 1334

Query: 945  LQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQR 1004
              E  P        + P L Q + LE   G  F    LL    T  S  Y + ++ S QR
Sbjct: 1335 RPESMPMSKDH---KKPHLIQQENLENHIGYTFKDKTLLMEALTHPSCPY-DTSIQSYQR 1390

Query: 1005 LEFLGDTVLQLITSDYL 1021
            LEFLGD VL ++  D +
Sbjct: 1391 LEFLGDAVLDMLIVDLI 1407


>gi|406918003|gb|EKD56659.1| hypothetical protein ACD_58C00123G0005 [uncultured bacterium]
          Length = 232

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/130 (33%), Positives = 76/130 (58%), Gaps = 2/130 (1%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           N+ HNERLEFLGDAV+E + + +L+  +P+  EG L  +R+A+V+ + L+ +A ++ +E 
Sbjct: 42  NLDHNERLEFLGDAVLELVVTEYLYKNYPN-PEGELTNWRSALVKGERLSQVATKLNIEK 100

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID-VADQVFSSVLYKDNEVRFKQW 937
            +  + G         +  +AN FEAL+GA++LD G   V   ++ +++    E+  K+ 
Sbjct: 101 LLYLSRGEQKSSGKSRQLILANAFEALIGAIYLDKGYQKVQKYIYDNIIIYLEEILDKKL 160

Query: 938 MYYPQHPLQE 947
               +  LQE
Sbjct: 161 FRDAKSTLQE 170



 Score = 42.7 bits (99), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 965  QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            ++   E  + + FN   L  +VF  RS    N    L  N+RLEFLGD VL+L+ ++YLY
Sbjct: 7    EIAKFEKKNHLSFNDKDLFRQVFVHRSYLNENPGFNLDHNERLEFLGDAVLELVVTEYLY 66


>gi|424866544|ref|ZP_18290379.1| Ribonuclease III [Leptospirillum sp. Group II 'C75']
 gi|124515064|gb|EAY56575.1| ribonuclease III [Leptospirillum rubarum]
 gi|387222846|gb|EIJ77248.1| Ribonuclease III [Leptospirillum sp. Group II 'C75']
          Length = 247

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 50/191 (26%)

Query: 728 LRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGD 787
           ++ HR L+ LEDR++Y+F+   LL+ A TH S+                           
Sbjct: 1   MKPHRDLSELEDRLRYRFRKIDLLEEATTHKSFMNE------------------------ 36

Query: 788 RRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFP 847
                                  GR++    N   NERLEFLGD V+  + + +L   +P
Sbjct: 37  -----------------------GRRLGVTRN---NERLEFLGDTVLGLVVAEYLMVTYP 70

Query: 848 DIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMG 907
              EG L+ ++  +V    LA +++ +G+  F+L   G +L    E    +A+  EA++ 
Sbjct: 71  KYPEGILSKFKGRVVSEPTLASVSRALGIGGFLLIGKGEELTQGREKSSLLADAMEAVIA 130

Query: 908 ALFLDGGIDVA 918
           A++LD G+D A
Sbjct: 131 AIYLDSGLDAA 141


>gi|87118656|ref|ZP_01074555.1| ribonuclease III [Marinomonas sp. MED121]
 gi|86166290|gb|EAQ67556.1| ribonuclease III [Marinomonas sp. MED121]
          Length = 217

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 77/140 (55%), Gaps = 12/140 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ ++ +  LFH FP  +EG L+  RA++V+ + LA +A+   L D++ 
Sbjct: 24  NNERLEFLGDSILNYVIAEDLFHRFPKAKEGELSRLRASLVKGETLAEIAREFKLGDYLK 83

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDV-ADQVFS-----------SVLYKD 929
              G            + +  E ++GA+FLD G+D  ++++ S            ++ KD
Sbjct: 84  LGAGELKSGGFRRDSILEDAVEGIIGAIFLDAGMDTCSERILSWYESRLNATSLKIVTKD 143

Query: 930 NEVRFKQWMYYPQHPLQEQE 949
            + R ++++   +H L + E
Sbjct: 144 AKTRLQEFLQARKHALPQYE 163


>gi|339640388|ref|ZP_08661832.1| ribonuclease III [Streptococcus sp. oral taxon 056 str. F0418]
 gi|339453657|gb|EGP66272.1| ribonuclease III [Streptococcus sp. oral taxon 056 str. F0418]
          Length = 232

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 1/141 (0%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I+HNERLEFLGDAV++ I S +L+  +P   EG L   R+ IV+ + LA   +    E F
Sbjct: 40  ISHNERLEFLGDAVLQLIISEYLYAKYPKKPEGDLTKLRSTIVREESLAGFTRDCQFEKF 99

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID-VADQVFSSVLYKDNEVRFKQWM 938
           +    G +     + +  + + FEA +GAL LD GI+ V D ++ +++ K     F+Q  
Sbjct: 100 IKLGKGEEKSGGRDRETILGDLFEAFLGALLLDKGIEAVRDFLYQTMIPKVEAGDFEQVT 159

Query: 939 YYPQHPLQEQEPDGDRQWVEQ 959
            Y     +  + +GD + + Q
Sbjct: 160 DYKTKLQELLQANGDVEILYQ 180



 Score = 49.7 bits (117), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 33/53 (62%), Gaps = 6/53 (11%)

Query: 974  GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            G++F  I LL   FT  S  Y N    L +  N+RLEFLGD VLQLI S+YLY
Sbjct: 13   GLVFTDISLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLIISEYLY 63


>gi|448925790|gb|AGE49368.1| RNase III [Acanthocystis turfacea Chlorella virus Can0610SP]
          Length = 292

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 2/113 (1%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           E N    ERLEFLGD+V+ F+ + +L+ VFP   EG L   R   V  + L+ LA ++GL
Sbjct: 95  EENGETFERLEFLGDSVLGFLIARYLYDVFPGKNEGVLTRLRVKFVSGKLLSKLAHQLGL 154

Query: 877 EDFMLYAH-GSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 928
            +F++ +  G   C     K  + + FEAL+GA++LD GI+ A Q   SVL K
Sbjct: 155 HEFIIMSQKGLYRCWHTNPK-TLEDAFEALIGAIYLDLGINAARQFLMSVLTK 206


>gi|257791118|ref|YP_003181724.1| ribonuclease III [Eggerthella lenta DSM 2243]
 gi|317488154|ref|ZP_07946728.1| ribonuclease III [Eggerthella sp. 1_3_56FAA]
 gi|257475015|gb|ACV55335.1| ribonuclease III [Eggerthella lenta DSM 2243]
 gi|316912741|gb|EFV34276.1| ribonuclease III [Eggerthella sp. 1_3_56FAA]
          Length = 281

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 1/130 (0%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           ERLEFLGD+++  I +   F  F D++EGGL   + A+V    L+ +A+R+G  D +++ 
Sbjct: 48  ERLEFLGDSILGAIVATIAFDRFHDLDEGGLTRIKVALVSGASLSDVAERLGFADVIVFG 107

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQH 943
                     L  A+ N +EA++ ALFLDGGI+ A+    + L         +    P+ 
Sbjct: 108 SSETGTGRRGLHSALENVYEAVVAALFLDGGIEAAEGFVRATLIPRMSADMAREPENPKS 167

Query: 944 PLQEQ-EPDG 952
            LQE+ + DG
Sbjct: 168 ALQEKLQEDG 177


>gi|153816163|ref|ZP_01968831.1| hypothetical protein RUMTOR_02411 [Ruminococcus torques ATCC 27756]
 gi|317500483|ref|ZP_07958707.1| ribonuclease III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089416|ref|ZP_08338315.1| ribonuclease III [Lachnospiraceae bacterium 3_1_46FAA]
 gi|336438820|ref|ZP_08618442.1| ribonuclease III [Lachnospiraceae bacterium 1_1_57FAA]
 gi|145846498|gb|EDK23416.1| ribonuclease III [Ruminococcus torques ATCC 27756]
 gi|316898238|gb|EFV20285.1| ribonuclease III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404784|gb|EGG84322.1| ribonuclease III [Lachnospiraceae bacterium 3_1_46FAA]
 gi|336017574|gb|EGN47333.1| ribonuclease III [Lachnospiraceae bacterium 1_1_57FAA]
          Length = 228

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 67/125 (53%), Gaps = 2/125 (1%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E I+S  LF   P + EG L   RA++V  Q LA  A+ I L  ++L 
Sbjct: 43  NERLEFLGDAVLELISSEFLFRQSPKVPEGELTKTRASMVCEQSLAMCARDIDLGSYLLL 102

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 942
             G ++          ++  EAL+GA++LDGG   A +     +  D E   K+  Y  +
Sbjct: 103 GKGEEVTGGRFRDSVTSDALEALIGAIYLDGGFTNAKEFIHRFVLTDQED--KKLFYDSK 160

Query: 943 HPLQE 947
             LQE
Sbjct: 161 TILQE 165


>gi|221633356|ref|YP_002522581.1| ribonuclease III [Thermomicrobium roseum DSM 5159]
 gi|221156675|gb|ACM05802.1| ribonuclease III [Thermomicrobium roseum DSM 5159]
          Length = 252

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/123 (39%), Positives = 72/123 (58%), Gaps = 4/123 (3%)

Query: 812 RKVATESNITH-NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
           R  +T++ +   NERLEFLGDAV+E + S  L+  FP   EG L  YRAA+V+   LA  
Sbjct: 48  RSRSTQAAVEEANERLEFLGDAVLELLVSEFLYRRFPTASEGELTAYRAALVRTPTLARW 107

Query: 871 AKRIGLEDFMLYAHGSDLCHEVE--LKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 928
           A+R  L++F LY   S++        +  +A  FEA++GAL+LD GI V  +    +L +
Sbjct: 108 ARRFRLDEF-LYLGRSEVPRPGRPVRERILAGAFEAVLGALYLDRGIRVVRRFLHRLLLE 166

Query: 929 DNE 931
           + E
Sbjct: 167 EAE 169


>gi|85068686|gb|ABC54695.1| ribonuclease III [Ehrlichia sp. P-Mtn]
          Length = 228

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 815 ATESNITHN-ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKR 873
           +++ NI  N ERLEFLGDAV+  + S  LF++FP   EG LA  + A+V    L  +A+ 
Sbjct: 31  SSKDNINFNYERLEFLGDAVLNLVISEMLFNIFPKDTEGNLAKKKTALVCGTKLVEVAQF 90

Query: 874 IGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVR 933
           I L  F++ + G   C        + N  EAL+GA++LDGG+  A   F  + +K++   
Sbjct: 91  INLGTFIIMSDGERTCGGANNSSNLENALEALIGAIYLDGGLKAAKN-FIFLFWKNSAKH 149

Query: 934 FK 935
            K
Sbjct: 150 MK 151


>gi|405983301|ref|ZP_11041611.1| ribonuclease III [Slackia piriformis YIT 12062]
 gi|404389309|gb|EJZ84386.1| ribonuclease III [Slackia piriformis YIT 12062]
          Length = 258

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 16/152 (10%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           ERLEFLGD+++  I +   FH +P+++EGGL   + A+V    LA +A+++G  D +++ 
Sbjct: 48  ERLEFLGDSILGAIVANEAFHEYPELDEGGLTRIKVALVSGTSLAEVAEKLGFADVIVFG 107

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQH 943
                     L  A+ N +EA++ ALFLD GI  A       L     V   +    P+ 
Sbjct: 108 SSERGTGRRGLHSALENVYEAVVAALFLDSGIAGAQAFVRRTLIPKMSVEMAREPENPKS 167

Query: 944 PLQE----------------QEPDGDRQWVEQ 959
            LQE                Q P  DR +V Q
Sbjct: 168 ALQEKLQEEGITPTYKLVETQGPPHDRTFVSQ 199


>gi|251797476|ref|YP_003012207.1| ribonuclease III [Paenibacillus sp. JDR-2]
 gi|247545102|gb|ACT02121.1| ribonuclease III [Paenibacillus sp. JDR-2]
          Length = 231

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/184 (30%), Positives = 80/184 (43%), Gaps = 51/184 (27%)

Query: 733 SLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHF 792
           S+N L+ R+Q +F+   LL+ A TH SY                                
Sbjct: 5   SINELQTRLQLRFKQLKLLKQAFTHTSY-------------------------------- 32

Query: 793 QNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEG 852
            N  K G                    I HNERLEFLGDAV++ + S +LF  +P+  EG
Sbjct: 33  VNEHKHG-------------------TIEHNERLEFLGDAVLQLLVSEYLFAAYPNRPEG 73

Query: 853 GLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLD 912
            L   RA++V    LA  A+R+ L   +    G +     +    +A+ FEA +GA+FLD
Sbjct: 74  ELTRMRASVVCEPSLAQFAERLELGAHIQLGRGEEQLGGRQRPALLADLFEAFVGAIFLD 133

Query: 913 GGID 916
            GI+
Sbjct: 134 AGIE 137



 Score = 43.1 bits (100), Expect = 0.71,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 6/50 (12%)

Query: 977  FNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITSDYLY 1022
            F  ++LL + FT  S  Y N     T+  N+RLEFLGD VLQL+ S+YL+
Sbjct: 17   FKQLKLLKQAFTHTS--YVNEHKHGTIEHNERLEFLGDAVLQLLVSEYLF 64


>gi|315221419|ref|ZP_07863340.1| ribonuclease III [Streptococcus anginosus F0211]
 gi|315189538|gb|EFU23232.1| ribonuclease III [Streptococcus anginosus F0211]
          Length = 232

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 1/142 (0%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDAV++ + S +L+  +P   EG L+  R+ IV+ + LA  ++    + 
Sbjct: 39  NISHNERLEFLGDAVLQLLISEYLYKKYPKKPEGDLSKLRSTIVREESLAGFSRDCQFDQ 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQW 937
           F+    G +          + + FEA +GAL LD G++        V+    EV  F+Q 
Sbjct: 99  FIKLGRGEEKSGGRNRDTILGDLFEAFLGALLLDKGVEAVKNFLYQVMIPKVEVGDFEQV 158

Query: 938 MYYPQHPLQEQEPDGDRQWVEQ 959
           + Y     +  + +GD + V Q
Sbjct: 159 IDYKTKLQELLQVNGDVEIVYQ 180



 Score = 47.4 bits (111), Expect = 0.040,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 6/53 (11%)

Query: 974  GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            G++F   +LL   FT  S  Y N    L +  N+RLEFLGD VLQL+ S+YLY
Sbjct: 13   GIVFQDEKLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISEYLY 63


>gi|444426168|ref|ZP_21221592.1| ribonuclease III [Vibrio campbellii CAIM 519 = NBRC 15631]
 gi|444240581|gb|ELU52119.1| ribonuclease III [Vibrio campbellii CAIM 519 = NBRC 15631]
          Length = 225

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANSKHNERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGHTLAELGREFDLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS------------V 925
           D++    G            +A+  EA++GA++LD  I+    +  S            V
Sbjct: 91  DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEAVRGIVLSWYNSRLEAIKPGV 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|335032359|ref|ZP_08525758.1| ribonuclease III [Streptococcus anginosus SK52 = DSM 20563]
 gi|333767274|gb|EGL44529.1| ribonuclease III [Streptococcus anginosus SK52 = DSM 20563]
          Length = 232

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 1/142 (0%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDAV++ + S +L+  +P   EG L+  R+ IV+ + LA  ++    + 
Sbjct: 39  NISHNERLEFLGDAVLQLLISEYLYKKYPKKPEGDLSKLRSTIVREESLAGFSRDCQFDQ 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQW 937
           F+    G +          + + FEA +GAL LD G++        V+    EV  F+Q 
Sbjct: 99  FIKLGRGEEKSGGRNRDTILGDLFEAFLGALLLDKGVEAVKNFLYQVMIPKVEVGDFEQV 158

Query: 938 MYYPQHPLQEQEPDGDRQWVEQ 959
           + Y     +  + +GD + V Q
Sbjct: 159 VDYKTKLQELLQVNGDVEIVYQ 180



 Score = 47.8 bits (112), Expect = 0.036,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 6/53 (11%)

Query: 974  GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            G++F   +LL   FT  S  Y N    L +  N+RLEFLGD VLQL+ S+YLY
Sbjct: 13   GIVFQDEKLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISEYLY 63


>gi|424776467|ref|ZP_18203448.1| ribonuclease III [Alcaligenes sp. HPC1271]
 gi|422888287|gb|EKU30676.1| ribonuclease III [Alcaligenes sp. HPC1271]
          Length = 252

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/104 (39%), Positives = 58/104 (55%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+V+ F  +  LF  F  I+EG L+  RA +V+   LA +A R+GL D++ 
Sbjct: 34  HNERLEFLGDSVLNFTVAALLFDRFQRIDEGDLSRLRANLVKQAALAEIATRLGLSDYLR 93

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSV 925
              G            +A+  EA+ GA+FLD G   A  V + +
Sbjct: 94  LGEGELKSGGFRRPSILADALEAIFGAVFLDAGFTQAQTVITQL 137


>gi|288575033|ref|ZP_06393390.1| ribonuclease III [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570774|gb|EFC92331.1| ribonuclease III [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 244

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/126 (38%), Positives = 69/126 (54%), Gaps = 8/126 (6%)

Query: 809 KLGRKVATESNITH-------NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAI 861
           +L R+  T S+  H       NERLEFLGDAV+E  TS  LF    D++EGGL   RA +
Sbjct: 25  ELLREALTHSSYAHESGLRSWNERLEFLGDAVLELATSTRLFRAMKDMDEGGLTRLRARL 84

Query: 862 VQNQHLAHLAKRIGLEDFMLYAHGSDLCHE-VELKHAMANCFEALMGALFLDGGIDVADQ 920
           V+ + L   A+ +GL   +    G     E  +L    A+  EA+ GA+++DGG D+A+ 
Sbjct: 85  VRKEALLTWAEALGLSGILRVNRGLRKKGEGCDLSSMHADAIEAIFGAVYMDGGYDMAES 144

Query: 921 VFSSVL 926
           V +  L
Sbjct: 145 VVNRYL 150


>gi|156975792|ref|YP_001446699.1| ribonuclease III [Vibrio harveyi ATCC BAA-1116]
 gi|269960405|ref|ZP_06174778.1| Ribonuclease 3 [Vibrio harveyi 1DA3]
 gi|424047713|ref|ZP_17785271.1| ribonuclease III [Vibrio cholerae HENC-03]
 gi|189043375|sp|A7MZA8.1|RNC_VIBHB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|156527386|gb|ABU72472.1| hypothetical protein VIBHAR_03536 [Vibrio harveyi ATCC BAA-1116]
 gi|269834832|gb|EEZ88918.1| Ribonuclease 3 [Vibrio harveyi 1DA3]
 gi|408883677|gb|EKM22456.1| ribonuclease III [Vibrio cholerae HENC-03]
          Length = 225

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANSKHNERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGHTLAELGREFDLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS------------V 925
           D++    G            +A+  EA++GA++LD  I+    +  S            V
Sbjct: 91  DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEAVRGIVLSWYNSRLEAIKPGV 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|57239534|ref|YP_180670.1| ribonuclease III [Ehrlichia ruminantium str. Welgevonden]
 gi|58579518|ref|YP_197730.1| ribonuclease III [Ehrlichia ruminantium str. Welgevonden]
 gi|81352757|sp|Q5HA74.1|RNC_EHRRW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|57161613|emb|CAH58541.1| ribonuclease III [Ehrlichia ruminantium str. Welgevonden]
 gi|58418144|emb|CAI27348.1| Ribonuclease III [Ehrlichia ruminantium str. Welgevonden]
          Length = 227

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 87/201 (43%), Gaps = 54/201 (26%)

Query: 735 NVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQN 794
           N +   I+Y F+N  LL  ALTHPS                                   
Sbjct: 4   NAISKIIKYDFKNTQLLNEALTHPS----------------------------------- 28

Query: 795 TRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGL 854
                      ++SK       ++N  + ERLEFLGDAV+  + S  LF++FP   EG L
Sbjct: 29  -----------VLSK-------DNNNFNYERLEFLGDAVLNLVISEMLFNIFPYDTEGNL 70

Query: 855 ATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGG 914
           A  + A+V    L  +A+ I L  F++ + G   C      + + N  EAL+GA++LDGG
Sbjct: 71  AKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGG 130

Query: 915 IDVADQVFSSVLYKDNEVRFK 935
           +  A   F  + +K++    K
Sbjct: 131 LKAAKD-FIFLFWKNSATHMK 150


>gi|149194957|ref|ZP_01872050.1| ribonuclease III [Caminibacter mediatlanticus TB-2]
 gi|149134878|gb|EDM23361.1| ribonuclease III [Caminibacter mediatlanticus TB-2]
          Length = 227

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/108 (37%), Positives = 67/108 (62%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLE+LGDAV++ I   +L+++FP  EEG L+  RAA+V  +    LAKR+ L  ++ 
Sbjct: 34  NNERLEYLGDAVLDLIVGEYLYNLFPKAEEGILSKLRAALVNEESFDKLAKRLNLGKYLF 93

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 929
            +   +     E    +++ FEAL+GAL+L+ G D A ++   +L ++
Sbjct: 94  LSPAEENNKGREKPSILSSAFEALIGALYLEAGFDKAKEIALKLLKEE 141


>gi|325830746|ref|ZP_08164130.1| ribonuclease III [Eggerthella sp. HGA1]
 gi|325487153|gb|EGC89596.1| ribonuclease III [Eggerthella sp. HGA1]
          Length = 304

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/189 (30%), Positives = 92/189 (48%), Gaps = 23/189 (12%)

Query: 781 RQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATE----SNITHN------------E 824
           R+PE+    + F + ++R +     I   LG + A E    S ITH             E
Sbjct: 18  RKPEHA---MTFTDEQQRKLAVAQEI---LGYRFADEQLLLSAITHPSATEGKSVKYSYE 71

Query: 825 RLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAH 884
           RLEFLGD+++  I +   F  F D++EGGL   + A+V    L+ +A+R+G  D +++  
Sbjct: 72  RLEFLGDSILGAIVATIAFDRFHDLDEGGLTRIKVALVSGASLSDVAERLGFADVIVFGS 131

Query: 885 GSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHP 944
                    L  A+ N +EA++ ALFLDGGI+ A+    + L         +    P+  
Sbjct: 132 SETGTGRRGLHSALENVYEAVVAALFLDGGIEAAEGFVRATLIPRMSADMAREPENPKSA 191

Query: 945 LQEQ-EPDG 952
           LQE+ + DG
Sbjct: 192 LQEKLQEDG 200


>gi|223986082|ref|ZP_03636108.1| hypothetical protein HOLDEFILI_03416 [Holdemania filiformis DSM
           12042]
 gi|223961955|gb|EEF66441.1| hypothetical protein HOLDEFILI_03416 [Holdemania filiformis DSM
           12042]
          Length = 247

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 63/104 (60%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEF+GDAV++   S  LF + P ++EG + T+RA +V  + LA  A+++ L  F+  
Sbjct: 40  NERLEFMGDAVLQLWVSDKLFRLDPPLDEGHMTTFRAQLVCEEALAIYARQLQLNSFLKL 99

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
             G +     E    +A+ FEA++GAL+ D G++  D + + V+
Sbjct: 100 GVGEEKTGGRERDSIIADMFEAMLGALYEDSGMEPIDNILTEVI 143


>gi|448936090|gb|AGE59638.1| RNase III [Acanthocystis turfacea Chlorella virus TN603.4.2]
          Length = 267

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 2/113 (1%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           E N    ERLEFLGD+V+ F+ + +L+ VFP   EG L   R   V  + L+ LA +IGL
Sbjct: 70  EENGETFERLEFLGDSVLGFLIARYLYDVFPGKNEGVLTRLRVKFVSGKLLSKLAHQIGL 129

Query: 877 EDFMLYAH-GSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 928
            +F++ +  G   C     K  + + FEAL+GA++LD GI+ A Q   SVL K
Sbjct: 130 HEFIIMSQKGLYRCWHTNPK-TLEDAFEALIGAIYLDLGINAARQFLMSVLTK 181


>gi|417644614|ref|ZP_12294592.1| ribonuclease III, partial [Staphylococcus warneri VCU121]
 gi|330684635|gb|EGG96340.1| ribonuclease III [Staphylococcus epidermidis VCU121]
          Length = 235

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 56/99 (56%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   S +LF   PD+ EG L   RA IV    L   A +I L + 
Sbjct: 52  LDHNERLEFLGDAVLELTVSRYLFDKHPDLPEGNLTKMRATIVCEPSLVIFANKIKLNEL 111

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
           +L   G +          +++ FEA +GAL+LD G+D+ 
Sbjct: 112 ILLGKGEEKTGGRTRPSLISDAFEAFVGALYLDQGLDIV 150


>gi|406927413|gb|EKD63451.1| hypothetical protein ACD_51C00278G0004 [uncultured bacterium]
          Length = 239

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/153 (31%), Positives = 83/153 (54%), Gaps = 19/153 (12%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDAV+E + +  L+  + +  EG L  +R+A+V+  +LA +AK++GL  ++ 
Sbjct: 40  HNERLEFLGDAVLELVVTEFLYKTYKN-PEGDLTNWRSALVRGANLAEIAKKLGLNKYLY 98

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL------------YKD 929
              G +     E  + +AN  EAL+GA++LD G   A +  +  +            Y D
Sbjct: 99  LGRGEEKSGGREKGYILANTVEALIGAIYLDKGYKDAHKFITKFIVCYLGEILEKGSYID 158

Query: 930 NEVRFKQ-----WMYYPQHPL-QEQEPDGDRQW 956
           ++ +F++     +   P + L +E  PD D+ +
Sbjct: 159 SKSKFQEISQSKFNITPVYQLIEESGPDHDKSF 191


>gi|423016246|ref|ZP_17006967.1| ribonuclease III [Achromobacter xylosoxidans AXX-A]
 gi|338780772|gb|EGP45173.1| ribonuclease III [Achromobacter xylosoxidans AXX-A]
          Length = 230

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/100 (40%), Positives = 58/100 (58%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+V+ F+ +  LF  +  I+EG L+  RA +V+   LA +A+R+ L  ++ 
Sbjct: 10  HNERLEFLGDSVLNFVVAAMLFERYAKIDEGDLSRLRANLVKQASLADIAQRLELSQYLR 69

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
              G            +A+  EAL GA+FLD G D A +V
Sbjct: 70  LGEGELKSGGFRRPSILADTVEALFGAVFLDAGFDAARRV 109


>gi|54294754|ref|YP_127169.1| ribonuclease III [Legionella pneumophila str. Lens]
 gi|397664331|ref|YP_006505869.1| RNase III [Legionella pneumophila subsp. pneumophila]
 gi|81368418|sp|Q5WVI4.1|RNC_LEGPL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|53754586|emb|CAH16070.1| hypothetical protein lpl1831 [Legionella pneumophila str. Lens]
 gi|395127742|emb|CCD05941.1| RNase III [Legionella pneumophila subsp. pneumophila]
          Length = 224

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 98/195 (50%), Gaps = 18/195 (9%)

Query: 798 RGINTLINIMSKLGRKVATESNITHN-ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
           R +N   N M+ L + +   S  + N ER EFLGD+++ F+ +  LF+ FP   EG L+ 
Sbjct: 10  RRLNYHFNNMAYLKQALTHCSAGSDNYERFEFLGDSILSFVIANELFNRFPLHSEGQLSR 69

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            R+ +V+ + LA +A+ IGL D++    G            +A+  EA++ A++LDGG+ 
Sbjct: 70  LRSFLVKGEMLAEIAREIGLGDYLFLGQGELRSGGFRRTSILADALEAILAAIYLDGGMT 129

Query: 917 VADQV----FSSVL--------YKDNEVRFKQWMY-----YPQHPLQEQEPDGDRQWVEQ 959
            A Q+    +SS L         KD + + ++++       P++ L + E D   Q    
Sbjct: 130 AAKQIILMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTKVEGDEHAQIFHV 189

Query: 960 SPLLKQLQYLEYSSG 974
           +  ++ +  + Y +G
Sbjct: 190 TCTIEGVSQVAYGTG 204


>gi|404398302|ref|ZP_10989886.1| ribonuclease III [Pseudomonas fuscovaginae UPB0736]
          Length = 229

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/99 (41%), Positives = 59/99 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDA++ F+    LF  FP   EG L+  RA +V+ + LA LA+   L D++ 
Sbjct: 35  NNERLEFLGDAILNFVAGEALFERFPQAREGQLSRLRARLVKGETLAVLARGFELGDYLR 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ 920
              G         +  +A+  EAL+GA++LD GIDVA +
Sbjct: 95  LGSGELKSGGFRRESILADALEALIGAIYLDAGIDVARE 133


>gi|83652594|gb|ABC36657.1| ribonuclease III, putative [Burkholderia thailandensis E264]
          Length = 487

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 48  SATHNERLEFLGDSVLNCAVAALLFQRFSKLDEGDLSRVRANLVKQQSLYEIAQALNISD 107

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 108 GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 151


>gi|73667460|ref|YP_303476.1| ribonuclease III [Ehrlichia canis str. Jake]
 gi|90101626|sp|Q3YQX7.1|RNC_EHRCJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|72394601|gb|AAZ68878.1| RNAse III [Ehrlichia canis str. Jake]
          Length = 226

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/101 (39%), Positives = 57/101 (56%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           ERLEFLGDAV+  + S  LF++FP   EG LA  + A+V    L  +A+ I L  F++ +
Sbjct: 39  ERLEFLGDAVLNIVISEMLFNIFPKDTEGNLAKKKTALVCGNQLVKVAQSINLGQFIIMS 98

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS 924
            G   C      + + N  EAL+GA++LDGG+  A     S
Sbjct: 99  DGERTCGGANNHNNLENALEALIGAIYLDGGLTAAQNFIHS 139


>gi|407005717|gb|EKE21771.1| Ribonuclease III [uncultured bacterium]
          Length = 230

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 75/131 (57%), Gaps = 2/131 (1%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           ++  NE+LEFLGD+++  ITS++L+  +P ++EG     +A+IV+ + L   AK + L+ 
Sbjct: 38  HLNSNEKLEFLGDSILSLITSLYLYQKYPSLQEGEYTNIKASIVKTESLYESAKSLKLDS 97

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWM 938
           F+  + G +     + K  +A+C EAL+ ++FLD G ++  Q     ++ +        +
Sbjct: 98  FLFLSKGEEKNKVRQNKSILADCLEALIASIFLDRGFEITYQFVLKFIFINKLDYIVNNL 157

Query: 939 YY--PQHPLQE 947
            Y  P++ LQE
Sbjct: 158 LYLSPKNRLQE 168



 Score = 51.6 bits (122), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDY 1020
            +K    LE + G+IF + +LL   F  RS    N    L SN++LEFLGD++L LITS Y
Sbjct: 1    MKNFNNLEKAIGIIFQNKKLLKNAFIHRSYLNENKKYHLNSNEKLEFLGDSILSLITSLY 60

Query: 1021 LY 1022
            LY
Sbjct: 61   LY 62


>gi|319939366|ref|ZP_08013726.1| ribonuclease 3 [Streptococcus anginosus 1_2_62CV]
 gi|421490061|ref|ZP_15937436.1| ribonuclease III [Streptococcus anginosus SK1138]
 gi|319811352|gb|EFW07647.1| ribonuclease 3 [Streptococcus anginosus 1_2_62CV]
 gi|400374074|gb|EJP26998.1| ribonuclease III [Streptococcus anginosus SK1138]
          Length = 232

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 1/142 (0%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDAV++ + S +L+  +P   EG L+  R+ IV+ + LA  ++    + 
Sbjct: 39  NISHNERLEFLGDAVLQLLISEYLYKKYPKKPEGDLSKLRSTIVREESLAGFSRDCQFDQ 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQW 937
           F+    G +          + + FEA +GAL LD G++        V+    EV  F+Q 
Sbjct: 99  FIKLGRGEEKSGGRNRDTILGDLFEAFLGALLLDKGVEAVKNFLYQVMIPKVEVGDFEQV 158

Query: 938 MYYPQHPLQEQEPDGDRQWVEQ 959
           + Y     +  + +GD + V Q
Sbjct: 159 VDYKTKLQELLQVNGDVEIVYQ 180



 Score = 47.4 bits (111), Expect = 0.038,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 6/53 (11%)

Query: 974  GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            G++F   +LL   FT  S  Y N    L +  N+RLEFLGD VLQL+ S+YLY
Sbjct: 13   GIVFQDEKLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISEYLY 63


>gi|154249761|ref|YP_001410586.1| ribonuclease III [Fervidobacterium nodosum Rt17-B1]
 gi|154153697|gb|ABS60929.1| Ribonuclease III [Fervidobacterium nodosum Rt17-B1]
          Length = 239

 Score = 78.2 bits (191), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 95/220 (43%), Gaps = 50/220 (22%)

Query: 729 RFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDR 788
           R  R L  L+ R+ Y F+N+ LL  AL H SY                            
Sbjct: 7   RERRVLEELQRRLGYTFKNQMLLFNALCHSSYAYE------------------------- 41

Query: 789 RIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPD 848
                             ++++GR      ++  NERLEFLGDAVVE +    L+  +PD
Sbjct: 42  ------------------LNQIGR------DVQDNERLEFLGDAVVELVVCDILYRNYPD 77

Query: 849 IEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGA 908
             EG +A  + A+   + L  LA  I L  ++    G +     +    +A+ FEAL  A
Sbjct: 78  SSEGDMAKVKGAVASEEVLTELANEIELGKYIFLGKGEEKTGGRKRSSILADAFEALCAA 137

Query: 909 LFLDGGIDVADQVFSSVLYKDNEVRFK-QWMYYPQHPLQE 947
           ++LDG ++   +VF   L ++ E+ +  Q ++  +  LQE
Sbjct: 138 IYLDGNLESVVKVFGEKLKREIEIFYTGQRIFDYKTALQE 177


>gi|407795767|ref|ZP_11142725.1| ribonuclease III [Salimicrobium sp. MJ3]
 gi|407020108|gb|EKE32822.1| ribonuclease III [Salimicrobium sp. MJ3]
          Length = 227

 Score = 78.2 bits (191), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 5/142 (3%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +L+  +P++EEG L   RA+IV    L   A  +  ++++L 
Sbjct: 42  NERLEFLGDAVLELGVSQYLYRKYPNMEEGDLTKLRASIVCEASLVDFANDLNFQEYVLL 101

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++         +A+ FEA +GAL+LD G D         +Y K     F   M Y 
Sbjct: 102 GKGEEMTGGRHRPALLADVFEAFIGALYLDQGFDRVLSYLGYYIYPKIKRGAFSHAMDYK 161

Query: 942 ----QHPLQEQEPDGDRQWVEQ 959
               +H  +E++ D D + V++
Sbjct: 162 SQLQEHIQREKQADIDYEIVDE 183


>gi|134295164|ref|YP_001118899.1| ribonuclease III [Burkholderia vietnamiensis G4]
 gi|134138321|gb|ABO54064.1| RNAse III [Burkholderia vietnamiensis G4]
          Length = 416

 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 30  SATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISD 89

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 90  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 133


>gi|449019428|dbj|BAM82830.1| similar to dsRNA-specific ribonuclease [Cyanidioschyzon merolae
           strain 10D]
          Length = 642

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 97/214 (45%), Gaps = 61/214 (28%)

Query: 718 AMLIPVL---ICHLRFHRSLNV--LEDRIQYKFQNRY--LLQLALTHPSYRENFGTNPDH 770
           A+L+PV    +C    H   N+  LE R++Y+F +RY  L +LA +HP+      +N D 
Sbjct: 44  ALLVPVRHLSLCGCVKHPDFNLANLEQRLRYRF-SRYPELAKLAFSHPA-----SSNGD- 96

Query: 771 ARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLG 830
                                       G   L+N                 NERLEFLG
Sbjct: 97  ----------------------------GHQRLLN-----------------NERLEFLG 111

Query: 831 DAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCH 890
           DA++  + +  L+   P+  EG L+  RAA+V     A    R+GLE+F+ +       +
Sbjct: 112 DAILSAVVADSLYRQLPEAREGELSVIRAAVVSRDACAKYFARLGLEEFLEFGPVPPPVY 171

Query: 891 E--VELKHAMANCFEALMGALFLDGGIDVADQVF 922
           E     ++  AN FEA++GA+++DGG + A + F
Sbjct: 172 ERLSRTQNIRANAFEAILGAIYIDGGYEAALEFF 205


>gi|57234229|ref|YP_181741.1| ribonuclease III [Dehalococcoides ethenogenes 195]
 gi|90101623|sp|Q3Z7Q8.1|RNC_DEHE1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|57224677|gb|AAW39734.1| ribonuclease III [Dehalococcoides ethenogenes 195]
          Length = 237

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 58/99 (58%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NER+EFLGDAV+  I +  L+H FPDI+EG L  +R+ +V+ + L  +A  I L  ++  
Sbjct: 42  NERMEFLGDAVLGVIFADRLYHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYL 101

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
             G D          +A  FEA++ A++LD GID   +V
Sbjct: 102 GRGEDASKGRFKPANLAGAFEAVLAAIYLDKGIDATREV 140



 Score = 40.4 bits (93), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 966  LQYLEYSSGVIFNHIRLL--ARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            L  LE S GV F ++ LL  A + T+      N   GSN+R+EFLGD VL +I +D LY
Sbjct: 4    LTELEKSLGVKFENLSLLEQALIHTSWVNENPNHLSGSNERMEFLGDAVLGVIFADRLY 62


>gi|406897689|gb|EKD41567.1| hypothetical protein ACD_73C00655G0003 [uncultured bacterium]
          Length = 248

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 18/151 (11%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDAV+E   S  L  +F +  EG L+  RAA+V    LA LA+ I L +F+ 
Sbjct: 59  NNERLEFLGDAVLELAVSHLLMQMFAESNEGDLSKLRAAVVNETSLAALAREINLGEFLF 118

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGG----IDVADQVFSSVL--------YKD 929
              G D C        +++ FEA++GA++ D G      V  ++F  +L         KD
Sbjct: 119 LGKGEDQCQGRTKDSLLSDAFEAVLGAIYQDSGFPKVFPVIQKLFQGILTQAQTENILKD 178

Query: 930 NEVRFKQ-----WMYYPQHPL-QEQEPDGDR 954
            + R ++     +   P + L  E+ PD D+
Sbjct: 179 YKTRLQEVSQEKFRAVPVYRLVDEKGPDHDK 209


>gi|343508969|ref|ZP_08746266.1| ribonuclease III [Vibrio scophthalmi LMG 19158]
 gi|342806035|gb|EGU41276.1| ribonuclease III [Vibrio scophthalmi LMG 19158]
          Length = 225

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANGKHNERLEFLGDSILSFVIADELYHRFPKVNEGDMSRMRATLVRGNTLAELGREFVLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSV 925
           +++    G            +A+  EA++GA++LD  I+V             D++    
Sbjct: 91  NYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEVVRGIVLSWYQTRLDEIKPGA 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|387901787|ref|YP_006332126.1| ribonuclease III [Burkholderia sp. KJ006]
 gi|387576679|gb|AFJ85395.1| Ribonuclease III [Burkholderia sp. KJ006]
          Length = 412

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 25  SATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISD 84

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 85  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 128


>gi|315634822|ref|ZP_07890104.1| ribonuclease III [Aggregatibacter segnis ATCC 33393]
 gi|315476374|gb|EFU67124.1| ribonuclease III [Aggregatibacter segnis ATCC 33393]
          Length = 226

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 12/136 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDA++    +  LFH+FP   EG L+  RA +V+   LA LA+   L D++ 
Sbjct: 36  HNERLEFLGDAILNLTIAEALFHLFPKCNEGELSRMRATLVREPTLAILARDFQLGDYLS 95

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSVL--------YKD 929
              G         +  +A+C EA++GA+ LD  +  A Q+    + ++L         KD
Sbjct: 96  LGQGELKSGGFRRESILADCVEAIIGAISLDSSLTHATQIVNRWYQTLLENIKPGDNQKD 155

Query: 930 NEVRFKQWMYYPQHPL 945
            + R ++++   + PL
Sbjct: 156 AKTRLQEYLQGNRQPL 171


>gi|253573486|ref|ZP_04850829.1| ribonuclease III [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847014|gb|EES75019.1| ribonuclease III [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 232

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 79/183 (43%), Gaps = 51/183 (27%)

Query: 734 LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
           L  L+ +++  FQNR LL+ A TH SY        +H          R  +Y D      
Sbjct: 5   LKQLQQKLELAFQNRQLLKQAFTHASYVN------EH----------RFSQYED------ 42

Query: 794 NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
                                        NERLEFLGDAV+E   S HL+ +FPD  EG 
Sbjct: 43  -----------------------------NERLEFLGDAVLELTVSEHLYRLFPDRPEGE 73

Query: 854 LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
           L   RAAIV    L   A+ +    ++L   G +L         +A+ FE+ +GAL+LD 
Sbjct: 74  LTKLRAAIVCEPSLVKFAENLEFGKYVLLGKGEELTGGRTRPALLADVFESFIGALYLDQ 133

Query: 914 GID 916
           G++
Sbjct: 134 GLE 136


>gi|149192067|ref|ZP_01870292.1| ribonuclease III [Vibrio shilonii AK1]
 gi|148834092|gb|EDL51104.1| ribonuclease III [Vibrio shilonii AK1]
          Length = 225

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 73/140 (52%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANGNHNERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGNTLAELGREFVLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS------------V 925
           D++    G            +A+  EA++GA++LD  +++  ++  S            V
Sbjct: 91  DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDVEMVRKIVLSWYMTRLEAIKPGV 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|448925457|gb|AGE49036.1| RNase III [Acanthocystis turfacea Chlorella virus Br0604L]
          Length = 267

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 2/113 (1%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           E N    ERLEFLGD+V+ F+ + +L+ VFP   EG L   R   V  + L+ LA +IGL
Sbjct: 70  EENGETFERLEFLGDSVLGFLIARYLYDVFPGKNEGVLTRLRVKFVSGKLLSKLALQIGL 129

Query: 877 EDFMLYAH-GSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 928
            +F++ +  G   C     K  + + FEAL+GA++LD GI+ A Q   SVL K
Sbjct: 130 HEFIIMSQKGLYRCWHTNPK-TLEDAFEALIGAIYLDLGINAARQFLMSVLTK 181


>gi|418962927|ref|ZP_13514776.1| ribonuclease III [Streptococcus anginosus subsp. whileyi CCUG
           39159]
 gi|383344903|gb|EID23053.1| ribonuclease III [Streptococcus anginosus subsp. whileyi CCUG
           39159]
          Length = 232

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 1/142 (0%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDAV++ + S +L+  +P   EG L+  R+ IV+ + LA  ++    + 
Sbjct: 39  NISHNERLEFLGDAVLQLLISEYLYKKYPKKPEGDLSKLRSTIVREESLAGFSRDCQFDQ 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQW 937
           F+    G +          + + FEA +GAL LD G++        V+    EV  F+Q 
Sbjct: 99  FIKLGRGEEKSGGRNRDTILGDLFEAFLGALLLDKGVEAVKNFLYQVMIPKVEVGDFEQV 158

Query: 938 MYYPQHPLQEQEPDGDRQWVEQ 959
           + Y     +  + +GD + V Q
Sbjct: 159 VDYKTKLQELLQVNGDVEIVYQ 180



 Score = 45.1 bits (105), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 6/52 (11%)

Query: 975  VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            ++F   +LL   FT  S  Y N    L +  N+RLEFLGD VLQL+ S+YLY
Sbjct: 14   IVFQDEKLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISEYLY 63


>gi|297530632|ref|YP_003671907.1| ribonuclease III [Geobacillus sp. C56-T3]
 gi|297253884|gb|ADI27330.1| ribonuclease III [Geobacillus sp. C56-T3]
          Length = 246

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 82/175 (46%), Gaps = 12/175 (6%)

Query: 788 RRIHFQNTRKRGINTLINIMSKLGRKVATESNITH---------NERLEFLGDAVVEFIT 838
           RR  FQ  +K+   T  N   KL  +  T S+  +         NERLEFLGDAV+E   
Sbjct: 14  RRAKFQELQKKIGITFRN--EKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTV 71

Query: 839 SIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAM 898
           S +LF  FP + EG L   RAAIV    L   A  +   + +L   G +L         +
Sbjct: 72  SQYLFQKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALL 131

Query: 899 ANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQEQEPDG 952
           A+ FEA +GAL+LD G+D   +     ++ K +E  F   M +     +  + DG
Sbjct: 132 ADVFEAFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQLQELVQRDG 186



 Score = 40.0 bits (92), Expect = 5.9,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 965  QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDY 1020
            + Q L+   G+ F + +LL + FT  S  Y N         N+RLEFLGD VL+L  S Y
Sbjct: 17   KFQELQKKIGITFRNEKLLIQAFTHSS--YVNEHRRRLHEDNERLEFLGDAVLELTVSQY 74

Query: 1021 LY 1022
            L+
Sbjct: 75   LF 76


>gi|331084978|ref|ZP_08334065.1| ribonuclease III [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330408678|gb|EGG88143.1| ribonuclease III [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 229

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 66/216 (30%), Positives = 90/216 (41%), Gaps = 53/216 (24%)

Query: 732 RSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIH 791
           + L  LE +I Y FQ + LLQ A+ H SY     TN  H +    +C             
Sbjct: 2   QRLKELEKKIGYTFQKKELLQKAMMHSSY-----TNEKHMKKQ--DC------------- 41

Query: 792 FQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEE 851
                                          NERLEFLGDAV+E  TS  LF   P + E
Sbjct: 42  -------------------------------NERLEFLGDAVLELTTSEALFFDNPSMPE 70

Query: 852 GGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFL 911
           G L   RA+IV    LA +AK + L  ++L   G +     +     ++  EAL+GA++L
Sbjct: 71  GELTKTRASIVCEPALAFVAKELMLGSYLLLGKGEEATGGRQRDSITSDAVEALIGAIYL 130

Query: 912 DGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
           DGG   A +     +  D E   K+  Y  +  LQE
Sbjct: 131 DGGFASAKEFIQKFILSDLEN--KKLFYDSKTILQE 164


>gi|406903549|gb|EKD45592.1| hypothetical protein ACD_69C00217G0003 [uncultured bacterium]
          Length = 224

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 73/134 (54%), Gaps = 11/134 (8%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+ FI +  LF+ +P+++EG L+  RA +V  + LA LA  + + D + +
Sbjct: 34  NERLEFLGDAVLNFIIAAELFYRYPEMKEGELSRLRANLVNGEVLADLASELYIGDHLQF 93

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ-----------VFSSVLYKDNE 931
             G       + K  +A+  EA++GA++LDGG  V  +             + V+ KD +
Sbjct: 94  GSGELRSGGPKRKSILADAMEAIIGAMYLDGGFIVTQRHVLNWFAKRLDDIAGVVQKDPK 153

Query: 932 VRFKQWMYYPQHPL 945
              ++ +   + PL
Sbjct: 154 TSLQELLQMRKSPL 167


>gi|417919187|ref|ZP_12562726.1| ribonuclease III [Streptococcus australis ATCC 700641]
 gi|342834427|gb|EGU68697.1| ribonuclease III [Streptococcus australis ATCC 700641]
          Length = 233

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 1/122 (0%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I+HNERLEFLGDA+++ + S +LF ++P   EG L+  R+ IV+ + LA  ++  G + F
Sbjct: 40  ISHNERLEFLGDAILQLVISEYLFALYPSKPEGDLSKMRSMIVREESLAGFSRDCGFDQF 99

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWM 938
           +    G +          + + FEA +GAL LD G++        V+    E  +F+Q +
Sbjct: 100 IKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGVETVRDFIQQVMIPKVEAGQFEQVI 159

Query: 939 YY 940
            Y
Sbjct: 160 DY 161



 Score = 42.0 bits (97), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 6/50 (12%)

Query: 977  FNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            F+   LL   FT  S  Y N    L +  N+RLEFLGD +LQL+ S+YL+
Sbjct: 16   FDDTELLETAFTHTS--YANEHRLLKISHNERLEFLGDAILQLVISEYLF 63


>gi|407793341|ref|ZP_11140375.1| RNase III, dsRNA-specific ribonuclease [Idiomarina xiamenensis
           10-D-4]
 gi|407214964|gb|EKE84805.1| RNase III, dsRNA-specific ribonuclease [Idiomarina xiamenensis
           10-D-4]
          Length = 230

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 12/138 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           H ERLEFLGD+++  + +  L+H FP+  EG L+  RA +V  + LA LAK+ GL +F++
Sbjct: 38  HYERLEFLGDSILSVVIADELYHRFPEAAEGDLSRMRATLVCGRALAKLAKQFGLGEFLV 97

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS------------VLYKD 929
              G         +  +A+  EAL+GA++L+ G+D    +  S            +  KD
Sbjct: 98  LGPGELKSGGYRRESILADTMEALIGAVYLESGMDACRPMILSWYAESLAKIKPGISQKD 157

Query: 930 NEVRFKQWMYYPQHPLQE 947
            + + ++W+   Q  L E
Sbjct: 158 AKTQLQEWLQARQLALPE 175


>gi|157150981|ref|YP_001450082.1| ribonuclease III [Streptococcus gordonii str. Challis substr. CH1]
 gi|189043362|sp|A8AWC2.1|RNC_STRGC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157075775|gb|ABV10458.1| Ribonuclease III (RNase III) [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 232

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/141 (33%), Positives = 73/141 (51%), Gaps = 1/141 (0%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I+HNERLEFLGDAV++ I S +LF  +P   EG L   R+ IV+ + LA  ++    + F
Sbjct: 40  ISHNERLEFLGDAVLQLIISEYLFEKYPKRPEGDLTKLRSTIVREESLAGFSRDCQFDRF 99

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWM 938
           +    G +     E +  + + FEA +GAL LD G++V       V+    E   F+Q  
Sbjct: 100 IKLGKGEEKSGGRERETILGDLFEAFLGALLLDKGLEVVKNFIYQVMIPKVEAGDFEQVT 159

Query: 939 YYPQHPLQEQEPDGDRQWVEQ 959
            Y     +  + +GD + + Q
Sbjct: 160 DYKTKLQELLQSNGDVEILYQ 180



 Score = 48.5 bits (114), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 7/65 (10%)

Query: 963  LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 1017
            +K+L+ L +   G++F  + LL   FT  S  Y N    L +  N+RLEFLGD VLQLI 
Sbjct: 1    MKKLENLLFDRFGLVFKDVSLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLII 58

Query: 1018 SDYLY 1022
            S+YL+
Sbjct: 59   SEYLF 63


>gi|261419391|ref|YP_003253073.1| ribonuclease III [Geobacillus sp. Y412MC61]
 gi|319766206|ref|YP_004131707.1| ribonuclease III [Geobacillus sp. Y412MC52]
 gi|448237348|ref|YP_007401406.1| ribonuclease 3 [Geobacillus sp. GHH01]
 gi|261375848|gb|ACX78591.1| ribonuclease III [Geobacillus sp. Y412MC61]
 gi|317111072|gb|ADU93564.1| ribonuclease III [Geobacillus sp. Y412MC52]
 gi|445206190|gb|AGE21655.1| ribonuclease 3 [Geobacillus sp. GHH01]
          Length = 246

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 82/175 (46%), Gaps = 12/175 (6%)

Query: 788 RRIHFQNTRKRGINTLINIMSKLGRKVATESNITH---------NERLEFLGDAVVEFIT 838
           RR  FQ  +K+   T  N   KL  +  T S+  +         NERLEFLGDAV+E   
Sbjct: 14  RRAKFQELQKKIGITFRN--EKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTV 71

Query: 839 SIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAM 898
           S +LF  FP + EG L   RAAIV    L   A  +   + +L   G +L         +
Sbjct: 72  SQYLFQKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALL 131

Query: 899 ANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQEQEPDG 952
           A+ FEA +GAL+LD G+D   +     ++ K +E  F   M +     +  + DG
Sbjct: 132 ADVFEAFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQLQELVQRDG 186



 Score = 40.0 bits (92), Expect = 6.1,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 965  QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDY 1020
            + Q L+   G+ F + +LL + FT  S  Y N         N+RLEFLGD VL+L  S Y
Sbjct: 17   KFQELQKKIGITFRNEKLLIQAFTHSS--YVNEHRRRLHEDNERLEFLGDAVLELTVSQY 74

Query: 1021 LY 1022
            L+
Sbjct: 75   LF 76


>gi|28899346|ref|NP_798951.1| ribonuclease III [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839958|ref|ZP_01992625.1| ribonuclease III [Vibrio parahaemolyticus AQ3810]
 gi|260365941|ref|ZP_05778431.1| ribonuclease III [Vibrio parahaemolyticus K5030]
 gi|260878963|ref|ZP_05891318.1| ribonuclease III [Vibrio parahaemolyticus AN-5034]
 gi|260898320|ref|ZP_05906816.1| ribonuclease III [Vibrio parahaemolyticus Peru-466]
 gi|417318931|ref|ZP_12105489.1| ribonuclease III [Vibrio parahaemolyticus 10329]
 gi|433658647|ref|YP_007276026.1| Ribonuclease III [Vibrio parahaemolyticus BB22OP]
 gi|31076860|sp|Q87LN9.1|RNC_VIBPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|28807582|dbj|BAC60835.1| ribonuclease III [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746517|gb|EDM57506.1| ribonuclease III [Vibrio parahaemolyticus AQ3810]
 gi|308085245|gb|EFO34940.1| ribonuclease III [Vibrio parahaemolyticus Peru-466]
 gi|308090440|gb|EFO40135.1| ribonuclease III [Vibrio parahaemolyticus AN-5034]
 gi|308113210|gb|EFO50750.1| ribonuclease III [Vibrio parahaemolyticus K5030]
 gi|328474121|gb|EGF44926.1| ribonuclease III [Vibrio parahaemolyticus 10329]
 gi|432509335|gb|AGB10852.1| Ribonuclease III [Vibrio parahaemolyticus BB22OP]
          Length = 225

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANSKHNERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGHTLAELGREFDLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS------------V 925
           D++    G            +A+  EA++GA++LD  I+    +  S            V
Sbjct: 91  DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEKVRSIVLSWYNSRLEAIKPGV 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|414074022|ref|YP_006999239.1| ribonuclease III [Lactococcus lactis subsp. cremoris UC509.9]
 gi|413973942|gb|AFW91406.1| ribonuclease III [Lactococcus lactis subsp. cremoris UC509.9]
          Length = 231

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 17/155 (10%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I +NERLEFLGD  +  + S +L+  +P+  EG L+  R++IV+ + LA+ ++  G  +F
Sbjct: 40  IANNERLEFLGDVALSLVISDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEF 99

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFK 935
           +   HG +     + +  + N FE+ +GALF+D G+D   +    V+      D+ V+  
Sbjct: 100 LRLGHGEEKMGGRDRETTLENLFESFLGALFIDQGMDEVRKFIQHVVIPHVKNDDYVKVI 159

Query: 936 QWMYYPQHPLQ-------------EQEPDGDRQWV 957
            +    Q  LQ             E+ P  DR +V
Sbjct: 160 DYKTELQEVLQVGGETTITYNILKEEGPAHDRSFV 194



 Score = 47.0 bits (110), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 6/65 (9%)

Query: 962  LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLIT 1017
            +LK  + L+   G++FN   LL   FT  S  +TN      + +N+RLEFLGD  L L+ 
Sbjct: 1    MLKLQEKLKNDYGLVFNDEDLLKTAFTHSS--FTNEERLPKIANNERLEFLGDVALSLVI 58

Query: 1018 SDYLY 1022
            SDYLY
Sbjct: 59   SDYLY 63


>gi|357638281|ref|ZP_09136154.1| ribonuclease III [Streptococcus urinalis 2285-97]
 gi|418418215|ref|ZP_12991406.1| ribonuclease 3 [Streptococcus urinalis FB127-CNA-2]
 gi|357586735|gb|EHJ56143.1| ribonuclease III [Streptococcus urinalis 2285-97]
 gi|410869314|gb|EKS17277.1| ribonuclease 3 [Streptococcus urinalis FB127-CNA-2]
          Length = 228

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/108 (36%), Positives = 63/108 (58%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDAV++ I S +LF  +P+  EG ++  R+ IV+ + LA  +K    + 
Sbjct: 39  NISHNERLEFLGDAVLQLIISEYLFSRYPEKAEGDMSKLRSMIVREESLAGFSKFCHFDR 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           ++    G +     +    + + FEA +GAL LD G++   Q  + V+
Sbjct: 99  YIKLGKGEEKSGGRDRATILGDLFEAFLGALLLDKGVETVRQFLNKVM 146



 Score = 42.7 bits (99), Expect = 0.98,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 6/52 (11%)

Query: 975  VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            + F +  LL   FT  S  Y N    L +  N+RLEFLGD VLQLI S+YL+
Sbjct: 14   ITFENQELLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLIISEYLF 63


>gi|319892231|ref|YP_004149106.1| ribonuclease III [Staphylococcus pseudintermedius HKU10-03]
 gi|386319501|ref|YP_006015664.1| ribonuclease III [Staphylococcus pseudintermedius ED99]
 gi|317161927|gb|ADV05470.1| Ribonuclease III [Staphylococcus pseudintermedius HKU10-03]
 gi|323464672|gb|ADX76825.1| ribonuclease III [Staphylococcus pseudintermedius ED99]
          Length = 243

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 58/106 (54%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDAV+E   S +LF  FP + EG L   RA IV    L   A+ I L   +L
Sbjct: 54  HNERLEFLGDAVLELTVSRYLFDAFPKLPEGELTKMRANIVCEPSLVVFAQHINLMPLIL 113

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
              G +          +A+ FEA +GAL+LD G++   Q   +V++
Sbjct: 114 LGKGEEKTGGRTRPSLVADVFEAFVGALYLDQGLEAVWQFAEAVIF 159


>gi|213018872|ref|ZP_03334680.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
 gi|212995823|gb|EEB56463.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
          Length = 233

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 70/107 (65%), Gaps = 4/107 (3%)

Query: 816 TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
           +E  +   ERLEFLGD+V+  + S+ LF +FP+ +EG LA  +  +V    +A++AK I 
Sbjct: 39  SEDQVVSYERLEFLGDSVLNMVVSVMLFKMFPEEKEGALAKRKTDLVCGSTIANVAKEIE 98

Query: 876 LEDFMLYAHGSDLCH--EVELKHAMANCFEALMGALFLDGGIDVADQ 920
           L +F++  + S+ C+  +  LK+ + N  EAL+GA+++DGG++  ++
Sbjct: 99  LGNFIIM-NNSERCNGGKCNLKN-LENSLEALIGAIYIDGGLESVEK 143


>gi|293604014|ref|ZP_06686427.1| ribonuclease III [Achromobacter piechaudii ATCC 43553]
 gi|292817618|gb|EFF76686.1| ribonuclease III [Achromobacter piechaudii ATCC 43553]
          Length = 253

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/100 (40%), Positives = 58/100 (58%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+V+ F+ +  LF  +  I+EG L+  RA +V+   LA +A+R+ L  ++ 
Sbjct: 33  HNERLEFLGDSVLNFVVAAMLFERYSKIDEGDLSRLRANLVKQASLADIAQRLELSQYLR 92

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
              G            +A+  EAL GA+FLD G D A +V
Sbjct: 93  LGEGELKSGGFRRPSILADTVEALFGAVFLDAGFDAARRV 132


>gi|167630237|ref|YP_001680736.1| ribonuclease iii [Heliobacterium modesticaldum Ice1]
 gi|226735377|sp|B0TGW4.1|RNC_HELMI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|167592977|gb|ABZ84725.1| ribonuclease iii [Heliobacterium modesticaldum Ice1]
          Length = 235

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 17/153 (11%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HN+RLEFLGDAV+  +    LF  +P   EG L+  RAA+V   +LA  A+R+ L  ++ 
Sbjct: 45  HNQRLEFLGDAVLGLVIGEQLFVRYPTWTEGELSRRRAAVVCEANLADGARRLQLGAWLK 104

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYK-------DN 930
              G +     E    +A+  EA++GA+FL GGI+ A +    +F   L         DN
Sbjct: 105 LGRGEEASGGREKPSILADALEAVIGAIFLSGGIEAARRFIVDLFGDALANAQNLVSGDN 164

Query: 931 EVRFKQWMYYPQHP------LQEQEPDGDRQWV 957
           +  F++W+            + E  PD D+++V
Sbjct: 165 KTAFQEWVQRTGPADIRYCIVDESGPDHDKRFV 197


>gi|167570687|ref|ZP_02363561.1| ribonuclease III [Burkholderia oklahomensis C6786]
          Length = 454

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 25  SATHNERLEFLGDSVLNCAVAALLFQRFSKLDEGDLSRVRANLVKQQSLYEIAQALNISD 84

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 85  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 128


>gi|161723174|ref|YP_442265.2| ribonuclease III [Burkholderia thailandensis E264]
          Length = 469

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 30  SATHNERLEFLGDSVLNCAVAALLFQRFSKLDEGDLSRVRANLVKQQSLYEIAQALNISD 89

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 90  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 133


>gi|16800985|ref|NP_471253.1| ribonuclease III [Listeria innocua Clip11262]
 gi|422413349|ref|ZP_16490308.1| ribonuclease III [Listeria innocua FSL S4-378]
 gi|423098714|ref|ZP_17086422.1| ribonuclease III [Listeria innocua ATCC 33091]
 gi|22654065|sp|Q92AK3.1|RNC_LISIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|16414420|emb|CAC97149.1| rncS [Listeria innocua Clip11262]
 gi|313618316|gb|EFR90363.1| ribonuclease III [Listeria innocua FSL S4-378]
 gi|370794541|gb|EHN62304.1| ribonuclease III [Listeria innocua ATCC 33091]
          Length = 229

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 79/191 (41%), Gaps = 51/191 (26%)

Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
           L++ + + FQN  LLQ A TH SY        +H R                        
Sbjct: 7   LQESVGFDFQNVELLQQAFTHSSYVN------EHRR------------------------ 36

Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
                                 N+  NERLEFLGDAV+E   S +LF+ +PD+ EG +  
Sbjct: 37  ---------------------ENVKDNERLEFLGDAVLELTVSDYLFNKYPDMAEGHMTK 75

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            RAAIV    L   A+ +    ++    G +          +A+ FE+ +GAL+LD GID
Sbjct: 76  MRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGID 135

Query: 917 VADQVFSSVLY 927
              +    V++
Sbjct: 136 KVVKFLERVIF 146



 Score = 46.6 bits (109), Expect = 0.075,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 6/64 (9%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 1018
            + Q + L+ S G  F ++ LL + FT  S  Y N      +  N+RLEFLGD VL+L  S
Sbjct: 1    MNQWEELQESVGFDFQNVELLQQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 1019 DYLY 1022
            DYL+
Sbjct: 59   DYLF 62


>gi|402567143|ref|YP_006616488.1| ribonuclease III [Burkholderia cepacia GG4]
 gi|402248340|gb|AFQ48794.1| ribonuclease III [Burkholderia cepacia GG4]
          Length = 408

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 30  SATHNERLEFLGDSVLNCAVAALLFQRFSKLDEGDLSRVRANLVKQQSLYEIAQALNISD 89

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 90  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 133


>gi|392960548|ref|ZP_10326016.1| Ribonuclease 3 [Pelosinus fermentans DSM 17108]
 gi|421054695|ref|ZP_15517660.1| ribonuclease III [Pelosinus fermentans B4]
 gi|421061063|ref|ZP_15523447.1| Ribonuclease 3 [Pelosinus fermentans B3]
 gi|421063755|ref|ZP_15525701.1| Ribonuclease 3 [Pelosinus fermentans A12]
 gi|421071558|ref|ZP_15532674.1| Ribonuclease 3 [Pelosinus fermentans A11]
 gi|392440376|gb|EIW18056.1| ribonuclease III [Pelosinus fermentans B4]
 gi|392446823|gb|EIW24094.1| Ribonuclease 3 [Pelosinus fermentans A11]
 gi|392452138|gb|EIW29091.1| Ribonuclease 3 [Pelosinus fermentans B3]
 gi|392455125|gb|EIW31932.1| Ribonuclease 3 [Pelosinus fermentans DSM 17108]
 gi|392462325|gb|EIW38420.1| Ribonuclease 3 [Pelosinus fermentans A12]
          Length = 242

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/98 (41%), Positives = 58/98 (59%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           +S I+HNERLEFLGDAV++ I S +LF  F  + EG L   RA IV    LA  A  +G+
Sbjct: 45  KSLISHNERLEFLGDAVLDLIVSEYLFRQFSHLPEGELTKARAVIVCEPTLARCAAELGI 104

Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGG 914
            +++    G       E    +A+ FEA++GA++LD G
Sbjct: 105 GEYLFLGKGETSSGGRERVSILADSFEAVIGAIYLDSG 142



 Score = 43.5 bits (101), Expect = 0.67,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITS 1018
            L  L  L  + GV F  I LL +  T  S  Y N      +  N+RLEFLGD VL LI S
Sbjct: 10   LDALSRLSNTLGVQFTDINLLHQALTHTS--YANECKKSLISHNERLEFLGDAVLDLIVS 67

Query: 1019 DYLY 1022
            +YL+
Sbjct: 68   EYLF 71


>gi|422323120|ref|ZP_16404160.1| ribonuclease 3 [Achromobacter xylosoxidans C54]
 gi|317401886|gb|EFV82493.1| ribonuclease 3 [Achromobacter xylosoxidans C54]
          Length = 253

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/100 (40%), Positives = 58/100 (58%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+V+ F+ +  LF  +  I+EG L+  RA +V+   LA +A+R+ L  ++ 
Sbjct: 33  HNERLEFLGDSVLNFVVAAMLFERYSKIDEGDLSRLRANLVKQASLADIAQRLELSQYLR 92

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
              G            +A+  EAL GA+FLD G D A +V
Sbjct: 93  LGEGELKSGGFRRPSILADTVEALFGAVFLDAGFDAARRV 132


>gi|257138458|ref|ZP_05586720.1| ribonuclease III [Burkholderia thailandensis E264]
          Length = 464

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 25  SATHNERLEFLGDSVLNCAVAALLFQRFSKLDEGDLSRVRANLVKQQSLYEIAQALNISD 84

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 85  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 128


>gi|148284924|ref|YP_001249014.1| ribonuclease III [Orientia tsutsugamushi str. Boryong]
 gi|146740363|emb|CAM80798.1| ribonuclease III [Orientia tsutsugamushi str. Boryong]
          Length = 251

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 6/127 (4%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           +RLEFLGD ++  + S  LF  F    EG LA  RA +V N+ +  +A++I L  +++  
Sbjct: 60  QRLEFLGDVILNLVISETLFKNFSHYNEGKLAKSRAFLVCNESICLIAQKINLHKYIIMT 119

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS---VLYKDNEVRFKQWMYY 940
              + C     K+ + N  EA++GA++LDGGI V   + +S   VL KD+E+     +  
Sbjct: 120 ANEEKCGGRSNKNNIENTMEAVIGAVYLDGGIHVIKDIVNSLWKVLIKDHELYL---IAD 176

Query: 941 PQHPLQE 947
           P+  LQE
Sbjct: 177 PKSALQE 183


>gi|333029521|ref|ZP_08457582.1| Ribonuclease 3 [Bacteroides coprosuis DSM 18011]
 gi|332740118|gb|EGJ70600.1| Ribonuclease 3 [Bacteroides coprosuis DSM 18011]
          Length = 276

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 4/109 (3%)

Query: 806 IMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQ 865
           ++ K   KV+ +    +NERLEFLGDAV++ + +  LFH F + +EG L   R+ IVQ +
Sbjct: 41  LIHKSSTKVSKDGYYQNNERLEFLGDAVLDAVVADLLFHYFDEKKEGFLTNTRSKIVQRE 100

Query: 866 HLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGG 914
            L  LA  IGL+  ++++  S   H     +   N FEAL+GA++LD G
Sbjct: 101 TLNKLAVEIGLDKHIIFSTKSS-SHN---NYMFGNAFEALIGAIYLDQG 145


>gi|187477630|ref|YP_785654.1| ribonuclease III [Bordetella avium 197N]
 gi|123514189|sp|Q2KWY0.1|RNC_BORA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|115422216|emb|CAJ48740.1| ribonuclease III [Bordetella avium 197N]
          Length = 251

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/100 (39%), Positives = 58/100 (58%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+V+ F+ +  LF  +  ++EG L+  RA +V+   LA +A+R+ L  ++ 
Sbjct: 33  HNERLEFLGDSVLNFVVAAMLFERYAKLDEGDLSRVRANLVKQASLADIAQRLELSPYLR 92

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
              G            +A+  EAL GA+FLD G D A +V
Sbjct: 93  LGEGEMKSGGFRRPSILADAVEALFGAVFLDAGFDAARKV 132


>gi|254993548|ref|ZP_05275738.1| ribonuclease III [Listeria monocytogenes FSL J2-064]
          Length = 206

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/109 (36%), Positives = 59/109 (54%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           N+  NERLEFLGDAV+E   S +LF+ +PD+ EG +   RAAIV    L   A+ +    
Sbjct: 38  NVKDNERLEFLGDAVLELTVSNYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSK 97

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           ++    G +          +A+ FE+ +GAL+LD GID        V++
Sbjct: 98  YVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVTFLERVIF 146



 Score = 44.7 bits (104), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 6/64 (9%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 1018
            + Q + L+ S G  F  + LL + FT  S  Y N      +  N+RLEFLGD VL+L  S
Sbjct: 1    MNQWEELQESVGFDFKDVELLKQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 1019 DYLY 1022
            +YL+
Sbjct: 59   NYLF 62


>gi|406957444|gb|EKD85371.1| hypothetical protein ACD_38C00036G0008 [uncultured bacterium]
          Length = 231

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 4/114 (3%)

Query: 813 KVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAK 872
           K+  ESN    ERLEFLGD+V+  + S +LF +     EG L   RA IV+ + LA  AK
Sbjct: 37  KIVLESN----ERLEFLGDSVLSLVVSSYLFSLRTSDTEGELTNLRAHIVRTESLAEAAK 92

Query: 873 RIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           ++ L  ++  + G ++         +AN +EAL+G+L+LD G++V  +V    L
Sbjct: 93  KLNLGKYLSLSKGEEISGGRNNPQILANTYEALLGSLYLDQGLEVTKEVIYKTL 146



 Score = 46.6 bits (109), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 975  VIFNHIRLLARVFTTRS-MGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            V FN+ ++L R F  RS +    + L SN+RLEFLGD+VL L+ S YL+
Sbjct: 15   VKFNNPQILNRAFLHRSYLNEVKIVLESNERLEFLGDSVLSLVVSSYLF 63


>gi|448935755|gb|AGE59304.1| RNase III [Acanthocystis turfacea Chlorella virus OR0704.3]
          Length = 286

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 2/113 (1%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           E N    ERLEFLGD+V+ F+ + +L+ VFP   EG L   R   V  + L+ LA ++GL
Sbjct: 89  EENGETFERLEFLGDSVLGFLIARYLYDVFPGKNEGVLTRLRVKFVSGKLLSKLAHQLGL 148

Query: 877 EDFMLYAH-GSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 928
            +F++ +  G   C     K  + + FEAL+GA++LD GI+ A Q   SVL K
Sbjct: 149 HEFIIMSQKGLYRCWHTNPK-TLEDAFEALIGAIYLDLGINAARQFLMSVLTK 200


>gi|227550768|ref|ZP_03980817.1| ribonuclease III [Enterococcus faecium TX1330]
 gi|314937654|ref|ZP_07844980.1| ribonuclease III [Enterococcus faecium TX0133a04]
 gi|314942847|ref|ZP_07849660.1| ribonuclease III [Enterococcus faecium TX0133C]
 gi|314948017|ref|ZP_07851421.1| ribonuclease III [Enterococcus faecium TX0082]
 gi|314950935|ref|ZP_07854004.1| ribonuclease III [Enterococcus faecium TX0133A]
 gi|314991417|ref|ZP_07856894.1| ribonuclease III [Enterococcus faecium TX0133B]
 gi|314995062|ref|ZP_07860182.1| ribonuclease III [Enterococcus faecium TX0133a01]
 gi|389867284|ref|YP_006374707.1| ribonuclease III [Enterococcus faecium DO]
 gi|424763790|ref|ZP_18191255.1| ribonuclease III [Enterococcus faecium TX1337RF]
 gi|424791403|ref|ZP_18217835.1| ribonuclease III [Enterococcus faecium V689]
 gi|424797447|ref|ZP_18223031.1| ribonuclease III [Enterococcus faecium S447]
 gi|424828237|ref|ZP_18252973.1| ribonuclease III [Enterococcus faecium R501]
 gi|424854841|ref|ZP_18279184.1| ribonuclease III [Enterococcus faecium R499]
 gi|424869418|ref|ZP_18293122.1| ribonuclease III [Enterococcus faecium R497]
 gi|424950205|ref|ZP_18365376.1| ribonuclease III [Enterococcus faecium R496]
 gi|424954344|ref|ZP_18369246.1| ribonuclease III [Enterococcus faecium R494]
 gi|424958431|ref|ZP_18373077.1| ribonuclease III [Enterococcus faecium R446]
 gi|424960282|ref|ZP_18374813.1| ribonuclease III [Enterococcus faecium P1986]
 gi|424965596|ref|ZP_18379547.1| ribonuclease III [Enterococcus faecium P1190]
 gi|424969514|ref|ZP_18383084.1| ribonuclease III [Enterococcus faecium P1140]
 gi|424970489|ref|ZP_18383998.1| ribonuclease III [Enterococcus faecium P1139]
 gi|424974109|ref|ZP_18387361.1| ribonuclease III [Enterococcus faecium P1137]
 gi|424976652|ref|ZP_18389725.1| ribonuclease III [Enterococcus faecium P1123]
 gi|424981080|ref|ZP_18393833.1| ribonuclease III [Enterococcus faecium ERV99]
 gi|424984594|ref|ZP_18397122.1| ribonuclease III [Enterococcus faecium ERV69]
 gi|424987454|ref|ZP_18399829.1| ribonuclease III [Enterococcus faecium ERV38]
 gi|424990906|ref|ZP_18403096.1| ribonuclease III [Enterococcus faecium ERV26]
 gi|424994563|ref|ZP_18406498.1| ribonuclease III [Enterococcus faecium ERV168]
 gi|424997392|ref|ZP_18409155.1| ribonuclease III [Enterococcus faecium ERV165]
 gi|425001410|ref|ZP_18412929.1| ribonuclease III [Enterococcus faecium ERV161]
 gi|425003989|ref|ZP_18415319.1| ribonuclease III [Enterococcus faecium ERV102]
 gi|425006908|ref|ZP_18418063.1| ribonuclease III [Enterococcus faecium ERV1]
 gi|425010840|ref|ZP_18421771.1| ribonuclease III [Enterococcus faecium E422]
 gi|425014158|ref|ZP_18424853.1| ribonuclease III [Enterococcus faecium E417]
 gi|425017866|ref|ZP_18428347.1| ribonuclease III [Enterococcus faecium C621]
 gi|425020875|ref|ZP_18431162.1| ribonuclease III [Enterococcus faecium C497]
 gi|425030492|ref|ZP_18435665.1| ribonuclease III [Enterococcus faecium C1904]
 gi|425032631|ref|ZP_18437657.1| ribonuclease III [Enterococcus faecium 515]
 gi|425035582|ref|ZP_18440417.1| ribonuclease III [Enterococcus faecium 514]
 gi|425037922|ref|ZP_18442559.1| ribonuclease III [Enterococcus faecium 513]
 gi|425041759|ref|ZP_18446142.1| ribonuclease III [Enterococcus faecium 511]
 gi|425045378|ref|ZP_18449484.1| ribonuclease III [Enterococcus faecium 510]
 gi|425048552|ref|ZP_18452452.1| ribonuclease III [Enterococcus faecium 509]
 gi|425051643|ref|ZP_18455300.1| ribonuclease III [Enterococcus faecium 506]
 gi|425054205|ref|ZP_18457718.1| ribonuclease III [Enterococcus faecium 505]
 gi|425058185|ref|ZP_18461576.1| ribonuclease III [Enterococcus faecium 504]
 gi|425060584|ref|ZP_18463875.1| ribonuclease III [Enterococcus faecium 503]
 gi|227180086|gb|EEI61058.1| ribonuclease III [Enterococcus faecium TX1330]
 gi|313590788|gb|EFR69633.1| ribonuclease III [Enterococcus faecium TX0133a01]
 gi|313593897|gb|EFR72742.1| ribonuclease III [Enterococcus faecium TX0133B]
 gi|313596944|gb|EFR75789.1| ribonuclease III [Enterococcus faecium TX0133A]
 gi|313598319|gb|EFR77164.1| ribonuclease III [Enterococcus faecium TX0133C]
 gi|313643031|gb|EFS07611.1| ribonuclease III [Enterococcus faecium TX0133a04]
 gi|313645615|gb|EFS10195.1| ribonuclease III [Enterococcus faecium TX0082]
 gi|388532533|gb|AFK57725.1| ribonuclease III [Enterococcus faecium DO]
 gi|402421966|gb|EJV54209.1| ribonuclease III [Enterococcus faecium TX1337RF]
 gi|402919418|gb|EJX40018.1| ribonuclease III [Enterococcus faecium V689]
 gi|402921003|gb|EJX41473.1| ribonuclease III [Enterococcus faecium S447]
 gi|402922876|gb|EJX43220.1| ribonuclease III [Enterococcus faecium R501]
 gi|402932233|gb|EJX51763.1| ribonuclease III [Enterococcus faecium R499]
 gi|402933494|gb|EJX52920.1| ribonuclease III [Enterococcus faecium R496]
 gi|402935590|gb|EJX54830.1| ribonuclease III [Enterococcus faecium R497]
 gi|402936978|gb|EJX56122.1| ribonuclease III [Enterococcus faecium R494]
 gi|402940215|gb|EJX59069.1| ribonuclease III [Enterococcus faecium R446]
 gi|402943291|gb|EJX61787.1| ribonuclease III [Enterococcus faecium P1190]
 gi|402948361|gb|EJX66507.1| ribonuclease III [Enterococcus faecium P1986]
 gi|402948484|gb|EJX66621.1| ribonuclease III [Enterococcus faecium P1140]
 gi|402957456|gb|EJX74847.1| ribonuclease III [Enterococcus faecium P1137]
 gi|402961653|gb|EJX78665.1| ribonuclease III [Enterococcus faecium P1139]
 gi|402964694|gb|EJX81462.1| ribonuclease III [Enterococcus faecium ERV99]
 gi|402968541|gb|EJX85020.1| ribonuclease III [Enterococcus faecium ERV69]
 gi|402968950|gb|EJX85399.1| ribonuclease III [Enterococcus faecium P1123]
 gi|402974331|gb|EJX90387.1| ribonuclease III [Enterococcus faecium ERV38]
 gi|402978365|gb|EJX94109.1| ribonuclease III [Enterococcus faecium ERV26]
 gi|402979859|gb|EJX95504.1| ribonuclease III [Enterococcus faecium ERV168]
 gi|402986368|gb|EJY01496.1| ribonuclease III [Enterococcus faecium ERV165]
 gi|402986862|gb|EJY01966.1| ribonuclease III [Enterococcus faecium ERV161]
 gi|402990642|gb|EJY05507.1| ribonuclease III [Enterococcus faecium ERV102]
 gi|402996112|gb|EJY10515.1| ribonuclease III [Enterococcus faecium ERV1]
 gi|402998652|gb|EJY12898.1| ribonuclease III [Enterococcus faecium E422]
 gi|402999508|gb|EJY13695.1| ribonuclease III [Enterococcus faecium E417]
 gi|403002725|gb|EJY16671.1| ribonuclease III [Enterococcus faecium C1904]
 gi|403003493|gb|EJY17390.1| ribonuclease III [Enterococcus faecium C621]
 gi|403008053|gb|EJY21582.1| ribonuclease III [Enterococcus faecium C497]
 gi|403012388|gb|EJY25615.1| ribonuclease III [Enterococcus faecium 515]
 gi|403017688|gb|EJY30416.1| ribonuclease III [Enterococcus faecium 514]
 gi|403020703|gb|EJY33211.1| ribonuclease III [Enterococcus faecium 513]
 gi|403025540|gb|EJY37618.1| ribonuclease III [Enterococcus faecium 511]
 gi|403027144|gb|EJY39053.1| ribonuclease III [Enterococcus faecium 510]
 gi|403030483|gb|EJY42166.1| ribonuclease III [Enterococcus faecium 509]
 gi|403036473|gb|EJY47821.1| ribonuclease III [Enterococcus faecium 505]
 gi|403037263|gb|EJY48563.1| ribonuclease III [Enterococcus faecium 506]
 gi|403038979|gb|EJY50160.1| ribonuclease III [Enterococcus faecium 504]
 gi|403042468|gb|EJY53418.1| ribonuclease III [Enterococcus faecium 503]
          Length = 231

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 60/108 (55%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           ++ NERLEFLGDAV+E + S +LF ++P + EG L   RAAIV+   L+  AK    + +
Sbjct: 44  LSDNERLEFLGDAVLELMVSQYLFRLYPHLPEGKLTKTRAAIVREDSLSKFAKECHFDQY 103

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          + + FEA +GAL+LD G D        V++
Sbjct: 104 VLLGKGEENSGGRTRPALLCDLFEAFLGALYLDQGFDTTHAFIEKVIF 151



 Score = 46.6 bits (109), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 956  WVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVL 1013
            W   + L K+L+    +  ++F+ + LL + FT  S    + NL L  N+RLEFLGD VL
Sbjct: 2    WKMDNQLTKELKE---NYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVL 58

Query: 1014 QLITSDYLY 1022
            +L+ S YL+
Sbjct: 59   ELMVSQYLF 67


>gi|190571469|ref|YP_001975827.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|238056573|sp|B3CMS0.1|RNC_WOLPP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|190357741|emb|CAQ55192.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
          Length = 230

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 70/107 (65%), Gaps = 4/107 (3%)

Query: 816 TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
           +E  +   ERLEFLGD+V+  + S+ LF +FP+ +EG LA  +  +V    +A++AK I 
Sbjct: 36  SEDQVVSYERLEFLGDSVLNMVVSVMLFKMFPEEKEGALAKRKTDLVCGSTIANVAKEIE 95

Query: 876 LEDFMLYAHGSDLCH--EVELKHAMANCFEALMGALFLDGGIDVADQ 920
           L +F++  + S+ C+  +  LK+ + N  EAL+GA+++DGG++  ++
Sbjct: 96  LGNFIIM-NNSERCNGGKCNLKN-LENSLEALIGAIYIDGGLESVEK 140


>gi|254252845|ref|ZP_04946163.1| Ribonuclease III [Burkholderia dolosa AUO158]
 gi|124895454|gb|EAY69334.1| Ribonuclease III [Burkholderia dolosa AUO158]
          Length = 377

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 30  SATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNIAD 89

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 90  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 133


>gi|394993931|ref|ZP_10386670.1| ribonuclease III [Bacillus sp. 916]
 gi|452855540|ref|YP_007497223.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum
           UCMB5036]
 gi|393805255|gb|EJD66635.1| ribonuclease III [Bacillus sp. 916]
 gi|452079800|emb|CCP21557.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum
           UCMB5036]
          Length = 249

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/126 (38%), Positives = 66/126 (52%), Gaps = 2/126 (1%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S  LF  +P + EG L   RAAIV    L  LA  +   D +L 
Sbjct: 58  NERLEFLGDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLL 117

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    +    +A+ FEA +GAL+LD G+D   Q     ++ K N+  F   M + 
Sbjct: 118 GKGEEMTGGRKRPALLADVFEAFIGALYLDQGLDPVQQFLKVYVFPKINDGAFSHVMDFK 177

Query: 942 QHPLQE 947
              LQE
Sbjct: 178 SQ-LQE 182


>gi|430742662|ref|YP_007201791.1| ribonuclease III [Singulisphaera acidiphila DSM 18658]
 gi|430014382|gb|AGA26096.1| ribonuclease III [Singulisphaera acidiphila DSM 18658]
          Length = 241

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 61/99 (61%), Gaps = 1/99 (1%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           +  NERLEFLGDA++  I    LF  FP+  EG L   ++ +V  +  A +++++ LEDF
Sbjct: 44  LVSNERLEFLGDAILGAIVCEQLFLKFPEYLEGELTRIKSVVVSRRTCAKISQKLALEDF 103

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
           ++   G     E     A+A+ FE+L+GA++LDGG++ A
Sbjct: 104 LVLGKGMGGQEETP-SSALADVFESLIGAIYLDGGMEAA 141


>gi|258622345|ref|ZP_05717370.1| Ribonuclease 3 [Vibrio mimicus VM573]
 gi|258626729|ref|ZP_05721551.1| Ribonuclease 3 [Vibrio mimicus VM603]
 gi|449143791|ref|ZP_21774614.1| ribonuclease III [Vibrio mimicus CAIM 602]
 gi|258580985|gb|EEW05912.1| Ribonuclease 3 [Vibrio mimicus VM603]
 gi|258585361|gb|EEW10085.1| Ribonuclease 3 [Vibrio mimicus VM573]
 gi|449080789|gb|EMB51700.1| ribonuclease III [Vibrio mimicus CAIM 602]
          Length = 225

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANGKHNERLEFLGDSILSFVIADELYHRFPKVNEGDMSRMRATLVRGNTLAELGREFDLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSV 925
           D++    G            +A+  EA++GA++LD  ++ A            +++    
Sbjct: 91  DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDLETARRIVLEWYHCRLEEIKPGA 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|167720558|ref|ZP_02403794.1| ribonuclease III [Burkholderia pseudomallei DM98]
          Length = 438

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 25  SATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISD 84

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 85  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 128


>gi|154686009|ref|YP_001421170.1| ribonuclease III [Bacillus amyloliquefaciens FZB42]
 gi|429505144|ref|YP_007186328.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum
           AS43.3]
 gi|189043290|sp|A7Z4L3.1|RNC_BACA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|154351860|gb|ABS73939.1| Rnc [Bacillus amyloliquefaciens FZB42]
 gi|429486734|gb|AFZ90658.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum
           AS43.3]
          Length = 249

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/126 (38%), Positives = 66/126 (52%), Gaps = 2/126 (1%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S  LF  +P + EG L   RAAIV    L  LA  +   D +L 
Sbjct: 58  NERLEFLGDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLL 117

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    +    +A+ FEA +GAL+LD G+D   Q     ++ K N+  F   M + 
Sbjct: 118 GKGEEMTGGRKRPALLADVFEAFIGALYLDQGLDPVQQFLKVYVFPKINDGAFSHVMDFK 177

Query: 942 QHPLQE 947
              LQE
Sbjct: 178 SQ-LQE 182


>gi|118474451|ref|YP_892860.1| ribonuclease III [Campylobacter fetus subsp. fetus 82-40]
 gi|261885507|ref|ZP_06009546.1| ribonuclease III [Campylobacter fetus subsp. venerealis str.
           Azul-94]
 gi|189043299|sp|A0RRM7.1|RNC_CAMFF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|118413677|gb|ABK82097.1| ribonuclease III [Campylobacter fetus subsp. fetus 82-40]
          Length = 223

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/105 (37%), Positives = 65/105 (61%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDAV++ I   +LF  F D +EG L+  RAA+V  +  A ++ +I L DF+ 
Sbjct: 35  NNERLEFLGDAVLDLIVGEYLFFKFKDTDEGNLSKLRAALVNEKSFASISSQIRLGDFLY 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
            +   D  +       +++  EALMGA++L+ G++   ++F ++L
Sbjct: 95  LSAAEDNNNGRNKPSLVSDALEALMGAIYLESGLEAVKKIFINLL 139


>gi|448932954|gb|AGE56511.1| RNase III [Acanthocystis turfacea Chlorella virus NE-JV-2]
          Length = 268

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 2/113 (1%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           E N    ERLEFLGD+V+ F+ + +L+ VFP   EG L   R   V  + L+ LA ++GL
Sbjct: 71  EENGETFERLEFLGDSVLGFLIARYLYDVFPGKNEGVLTRLRVKFVSGKLLSKLAHQLGL 130

Query: 877 EDFMLYAH-GSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 928
            +F++ +  G   C     K  + + FEAL+GA++LD GI+ A Q   SVL K
Sbjct: 131 HEFIIMSQKGLYRCWHTNPK-TLEDAFEALIGAIYLDLGINAARQFLMSVLTK 182


>gi|311104757|ref|YP_003977610.1| ribonuclease III [Achromobacter xylosoxidans A8]
 gi|310759446|gb|ADP14895.1| ribonuclease III [Achromobacter xylosoxidans A8]
          Length = 253

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/100 (40%), Positives = 58/100 (58%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+V+ F+ +  LF  +  I+EG L+  RA +V+   LA +A+R+ L  ++ 
Sbjct: 33  HNERLEFLGDSVLNFVVAAMLFERYSKIDEGDLSRLRANLVKQASLADIAQRLELSQYLR 92

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
              G            +A+  EAL GA+FLD G D A +V
Sbjct: 93  LGEGELKSGGFRRPSILADTVEALFGAVFLDAGFDAARRV 132


>gi|262282633|ref|ZP_06060401.1| ribonuclease III [Streptococcus sp. 2_1_36FAA]
 gi|262261924|gb|EEY80622.1| ribonuclease III [Streptococcus sp. 2_1_36FAA]
          Length = 232

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 1/141 (0%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I+HNERLEFLGDAV++ I S +LF  +P   EG L   R+ IV+ + LA  ++    + F
Sbjct: 40  ISHNERLEFLGDAVLQLIISEYLFEKYPKRPEGDLTKLRSTIVREESLAGFSRDCQFDLF 99

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID-VADQVFSSVLYKDNEVRFKQWM 938
           +    G +     E +  + + FEA +GAL LD G++ V D ++  ++ K     F+Q  
Sbjct: 100 IKLGKGEEKSGGRERETILGDLFEAFLGALLLDKGLEIVKDFIYQVMIPKVEAGDFEQVT 159

Query: 939 YYPQHPLQEQEPDGDRQWVEQ 959
            Y     +  + +GD + + Q
Sbjct: 160 DYKTKLQELLQSNGDVEILYQ 180



 Score = 48.5 bits (114), Expect = 0.020,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 7/65 (10%)

Query: 963  LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 1017
            +K+L+ L +   G++F  + LL   FT  S  Y N    L +  N+RLEFLGD VLQLI 
Sbjct: 1    MKKLENLLFDRFGLVFKDVSLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLII 58

Query: 1018 SDYLY 1022
            S+YL+
Sbjct: 59   SEYLF 63


>gi|260881779|ref|ZP_05893556.1| ribonuclease III [Mitsuokella multacida DSM 20544]
 gi|260847870|gb|EEX67877.1| ribonuclease III [Mitsuokella multacida DSM 20544]
          Length = 247

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 65/103 (63%)

Query: 816 TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
           ++ N  HNERLEFLGDAV+E  +S +L+  FP++ EG L   RA+IV +  LA LA  + 
Sbjct: 47  SKRNTAHNERLEFLGDAVLELASSTYLYEHFPEMPEGELTKTRASIVCSTTLAKLATGLH 106

Query: 876 LEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
           L D++L   G ++      +  + + FEA++GA++LD G + A
Sbjct: 107 LGDYLLLGRGEEMGGGRTRQTNLEDVFEAVIGAVYLDQGWEAA 149



 Score = 43.1 bits (100), Expect = 0.86,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 964  KQLQYLEYSSGVIFNHIRLLARVFT-TRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            +QL  L    GV F+ I LL +  T T     +      N+RLEFLGD VL+L +S YLY
Sbjct: 15   QQLLVLSERLGVTFHDIALLDQALTHTSYANESKRNTAHNERLEFLGDAVLELASSTYLY 74


>gi|218248059|ref|YP_002373430.1| Ribonuclease III [Cyanothece sp. PCC 8801]
 gi|257060612|ref|YP_003138500.1| ribonuclease III [Cyanothece sp. PCC 8802]
 gi|218168537|gb|ACK67274.1| Ribonuclease III [Cyanothece sp. PCC 8801]
 gi|256590778|gb|ACV01665.1| ribonuclease III [Cyanothece sp. PCC 8802]
          Length = 225

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/161 (32%), Positives = 80/161 (49%), Gaps = 26/161 (16%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDA+++F+ S  L+  +P++ E  L   R+ +V    LA  A+ + L   M 
Sbjct: 32  HNERLEFLGDAILQFVVSEELYRRYPELTEAQLTRLRSKLVDEPQLAQFARTLDLGQLMY 91

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK---DNEV------ 932
              G+      E    +++ FEA++GA FLD GI+ A Q F   L+K   DN V      
Sbjct: 92  LGQGAIKDGGRENPALLSDAFEAIIGAYFLDAGIE-AVQYFVRSLFKEAIDNLVLPESRT 150

Query: 933 ----------RFKQWMY--YPQHP----LQEQEPDGDRQWV 957
                     R +QW    Y Q P    +++  PD  +++V
Sbjct: 151 VSPSIIDVKNRLQQWALEQYKQVPEYFLIEQSGPDHAKEFV 191


>gi|448933971|gb|AGE57525.1| RNase III [Acanthocystis turfacea Chlorella virus NTS-1]
          Length = 268

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 2/113 (1%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           E N    ERLEFLGD+V+ F+ + +L+ VFP   EG L   R   V  + L+ LA ++GL
Sbjct: 71  EENGETFERLEFLGDSVLGFLIARYLYDVFPGKNEGVLTRLRVKFVSGKLLSKLAHQLGL 130

Query: 877 EDFMLYAH-GSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 928
            +F++ +  G   C     K  + + FEAL+GA++LD GI+ A Q   SVL K
Sbjct: 131 HEFIIMSQKGLYRCWHTNPK-TLEDAFEALIGAIYLDLGINAARQFLMSVLTK 182


>gi|53720035|ref|YP_109021.1| ribonuclease III [Burkholderia pseudomallei K96243]
 gi|167816752|ref|ZP_02448432.1| ribonuclease III [Burkholderia pseudomallei 91]
 gi|167895244|ref|ZP_02482646.1| ribonuclease III [Burkholderia pseudomallei 7894]
 gi|167919873|ref|ZP_02506964.1| ribonuclease III [Burkholderia pseudomallei BCC215]
 gi|52210449|emb|CAH36432.1| ribonuclease III [Burkholderia pseudomallei K96243]
          Length = 467

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 30  SATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISD 89

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 90  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 133


>gi|95930677|ref|ZP_01313411.1| Ribonuclease III [Desulfuromonas acetoxidans DSM 684]
 gi|95133329|gb|EAT14994.1| Ribonuclease III [Desulfuromonas acetoxidans DSM 684]
          Length = 244

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 51/197 (25%)

Query: 730 FHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRR 789
           F + L+  E+R+ Y+F +R+ LQ AL H SY               +N  +R P      
Sbjct: 9   FDKELSQFEERLGYRFTDRHYLQTALIHKSY---------------ANEQLRDPA----- 48

Query: 790 IHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDI 849
                                            NER EFLGDAV++ + + +LF  +P +
Sbjct: 49  -------------------------------ACNERQEFLGDAVLDLVMADYLFCTYPQL 77

Query: 850 EEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGAL 909
            EG L+  R+ +V  + LA +A+R+ L   +    G       +  + +A+  EA+ GA+
Sbjct: 78  PEGELSRIRSELVSARALAKVARRLNLGPCLKLGRGERRSGGQDKDNLLADALEAVFGAV 137

Query: 910 FLDGGIDVADQVFSSVL 926
           FLD G DVA  V   + 
Sbjct: 138 FLDAGWDVARDVLGRMF 154


>gi|167581151|ref|ZP_02374025.1| ribonuclease III [Burkholderia thailandensis TXDOH]
          Length = 464

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 25  SATHNERLEFLGDSVLNCAVAALLFQRFSKLDEGDLSRVRANLVKQQSLYEIAQALNISD 84

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 85  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 128


>gi|347756290|ref|YP_004863853.1| ribonuclease III [Candidatus Chloracidobacterium thermophilum B]
 gi|347588807|gb|AEP13336.1| ribonuclease III, bacterial [Candidatus Chloracidobacterium
           thermophilum B]
          Length = 242

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/137 (35%), Positives = 68/137 (49%), Gaps = 13/137 (9%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDAV+ FI    L   FP   EG LA  +  +V +  LA  A+RIGL + + 
Sbjct: 48  HNERLEFLGDAVLGFIICAWLVEQFPTASEGDLARAKGHLVASAQLAQAAERIGLGEALR 107

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDV---------ADQV----FSSVLYK 928
                +          + N FEA++ AL+LDGGI V         AD+V    F+ +   
Sbjct: 108 LGRNEEQQGGRHKTTLLENAFEAVVAALYLDGGIAVATDAVRRIFADEVAALDFAHIAAL 167

Query: 929 DNEVRFKQWMYYPQHPL 945
           D +   + W+   + PL
Sbjct: 168 DAKTALQDWLRLHRRPL 184


>gi|53725351|ref|YP_102339.1| ribonuclease III [Burkholderia mallei ATCC 23344]
 gi|121599423|ref|YP_993770.1| ribonuclease III [Burkholderia mallei SAVP1]
 gi|124385463|ref|YP_001028764.1| ribonuclease III [Burkholderia mallei NCTC 10229]
 gi|126450086|ref|YP_001081328.1| ribonuclease III [Burkholderia mallei NCTC 10247]
 gi|167000779|ref|ZP_02266586.1| ribonuclease III [Burkholderia mallei PRL-20]
 gi|238562760|ref|ZP_00439921.2| ribonuclease III [Burkholderia mallei GB8 horse 4]
 gi|254178423|ref|ZP_04885078.1| ribonuclease III [Burkholderia mallei ATCC 10399]
 gi|254199232|ref|ZP_04905598.1| ribonuclease III [Burkholderia mallei FMH]
 gi|254205539|ref|ZP_04911891.1| ribonuclease III [Burkholderia mallei JHU]
 gi|254357706|ref|ZP_04973979.1| ribonuclease III [Burkholderia mallei 2002721280]
 gi|52428774|gb|AAU49367.1| ribonuclease III/hypothetical protein, fusion [Burkholderia mallei
           ATCC 23344]
 gi|121228233|gb|ABM50751.1| ribonuclease III [Burkholderia mallei SAVP1]
 gi|124293483|gb|ABN02752.1| ribonuclease III/hypothetical protein [Burkholderia mallei NCTC
           10229]
 gi|126242956|gb|ABO06049.1| ribonuclease III [Burkholderia mallei NCTC 10247]
 gi|147748828|gb|EDK55902.1| ribonuclease III [Burkholderia mallei FMH]
 gi|147752982|gb|EDK60047.1| ribonuclease III [Burkholderia mallei JHU]
 gi|148026833|gb|EDK84854.1| ribonuclease III [Burkholderia mallei 2002721280]
 gi|160699462|gb|EDP89432.1| ribonuclease III [Burkholderia mallei ATCC 10399]
 gi|238522001|gb|EEP85448.1| ribonuclease III [Burkholderia mallei GB8 horse 4]
 gi|243063329|gb|EES45515.1| ribonuclease III [Burkholderia mallei PRL-20]
          Length = 467

 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 30  SATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISD 89

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 90  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 133


>gi|167903627|ref|ZP_02490832.1| ribonuclease III [Burkholderia pseudomallei NCTC 13177]
          Length = 467

 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 30  SATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISD 89

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 90  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 133


>gi|126454458|ref|YP_001067087.1| ribonuclease III [Burkholderia pseudomallei 1106a]
 gi|167825159|ref|ZP_02456630.1| ribonuclease III [Burkholderia pseudomallei 9]
 gi|167846656|ref|ZP_02472164.1| ribonuclease III [Burkholderia pseudomallei B7210]
 gi|167911876|ref|ZP_02498967.1| ribonuclease III [Burkholderia pseudomallei 112]
 gi|242317956|ref|ZP_04816972.1| ribonuclease III [Burkholderia pseudomallei 1106b]
 gi|254191245|ref|ZP_04897749.1| ribonuclease III [Burkholderia pseudomallei Pasteur 52237]
 gi|254195715|ref|ZP_04902141.1| ribonuclease III [Burkholderia pseudomallei S13]
 gi|254296871|ref|ZP_04964324.1| ribonuclease III [Burkholderia pseudomallei 406e]
 gi|126228100|gb|ABN91640.1| ribonuclease III [Burkholderia pseudomallei 1106a]
 gi|157808000|gb|EDO85170.1| ribonuclease III [Burkholderia pseudomallei 406e]
 gi|157938917|gb|EDO94587.1| ribonuclease III [Burkholderia pseudomallei Pasteur 52237]
 gi|169652460|gb|EDS85153.1| ribonuclease III [Burkholderia pseudomallei S13]
 gi|242141195|gb|EES27597.1| ribonuclease III [Burkholderia pseudomallei 1106b]
          Length = 467

 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 30  SATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISD 89

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 90  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 133


>gi|56419727|ref|YP_147045.1| ribonuclease III [Geobacillus kaustophilus HTA426]
 gi|81347639|sp|Q5L0Q3.1|RNC_GEOKA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56379569|dbj|BAD75477.1| dsRNA-specific ribonuclease [Geobacillus kaustophilus HTA426]
          Length = 246

 Score = 77.4 bits (189), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 1/131 (0%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  FP + EG L   RAAIV    L   A  +   + +L 
Sbjct: 56  NERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLL 115

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G +L         +A+ FEA +GAL+LD G+D   +     ++ K +E  F   M + 
Sbjct: 116 GKGEELTGGRTRPALLADVFEAFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFK 175

Query: 942 QHPLQEQEPDG 952
               +  + DG
Sbjct: 176 SQLQELVQRDG 186



 Score = 40.0 bits (92), Expect = 6.5,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 965  QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDY 1020
            + Q L+   G+ F + +LL + FT  S  Y N         N+RLEFLGD VL+L  S Y
Sbjct: 17   KFQELQNKIGITFRNEKLLIQAFTHSS--YVNEHRRRLHEDNERLEFLGDAVLELTVSQY 74

Query: 1021 LY 1022
            L+
Sbjct: 75   LF 76


>gi|312879974|ref|ZP_07739774.1| ribonuclease III [Aminomonas paucivorans DSM 12260]
 gi|310783265|gb|EFQ23663.1| ribonuclease III [Aminomonas paucivorans DSM 12260]
          Length = 232

 Score = 77.4 bits (189), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 20/191 (10%)

Query: 779 GVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITH-NERLEFLGDAVVEFI 837
           G++ P +  R + ++  R+  +   +   S      A ES ++  NERLEFLGDAV+E  
Sbjct: 4   GIQPPAFLGRALRYRFHRQELLTEALTHAS-----FANESGLSRCNERLEFLGDAVLELC 58

Query: 838 TSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHA 897
            S  L+   PD EEG L  +R+A+V   +LA   +  G+   +L   G       E  + 
Sbjct: 59  VSERLYRERPDAEEGDLTRWRSALVCAPNLARWGRLWGIPACLLLGKGFRRGGPNE--NM 116

Query: 898 MANCFEALMGALFLDGGIDVADQVFSSVLY-------KDNEVRFKQWMYYPQHP-----L 945
           +A+ FEA++GA++LDGG+D   +V   +         KD + R ++ +    HP     L
Sbjct: 117 VADAFEAVLGAIYLDGGLDAVREVLHPLPLPEVLEEGKDPKSRLQEVLQGQGHPCPRYEL 176

Query: 946 QEQEPDGDRQW 956
           +EQ      +W
Sbjct: 177 REQSGPPHERW 187


>gi|126438815|ref|YP_001059800.1| ribonuclease III [Burkholderia pseudomallei 668]
 gi|126218308|gb|ABN81814.1| ribonuclease III [Burkholderia pseudomallei 668]
          Length = 467

 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 30  SATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISD 89

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 90  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 133


>gi|418380399|ref|ZP_12966375.1| ribonuclease III [Burkholderia pseudomallei 354a]
 gi|418552738|ref|ZP_13117589.1| ribonuclease III [Burkholderia pseudomallei 354e]
 gi|385372655|gb|EIF77756.1| ribonuclease III [Burkholderia pseudomallei 354e]
 gi|385377441|gb|EIF82020.1| ribonuclease III [Burkholderia pseudomallei 354a]
          Length = 462

 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 25  SATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISD 84

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 85  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 128


>gi|417851881|ref|ZP_12497549.1| ribonuclease III [Pasteurella multocida subsp. gallicida str.
           Anand1_poultry]
 gi|338218195|gb|EGP03985.1| ribonuclease III [Pasteurella multocida subsp. gallicida str.
           Anand1_poultry]
          Length = 225

 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 60/104 (57%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           + + HNERLEFLGDA++ FI +  L+H FP   EG L+  RA +V+   LA LA++  L 
Sbjct: 31  AAVKHNERLEFLGDAILNFIIAEALYHQFPKCNEGELSRMRATLVREPTLASLARQFELG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           D++    G         +  +A+C EA++GA+ LD  +    ++
Sbjct: 91  DYLSLGPGELKSGGFRRESILADCVEAIIGAISLDSDLATTTKI 134


>gi|167619235|ref|ZP_02387866.1| ribonuclease III [Burkholderia thailandensis Bt4]
          Length = 434

 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 25  SATHNERLEFLGDSVLNCAVAALLFQRFSKLDEGDLSRVRANLVKQQSLYEIAQALNISD 84

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 85  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 128


>gi|76811515|ref|YP_334276.1| ribonuclease III [Burkholderia pseudomallei 1710b]
 gi|167739551|ref|ZP_02412325.1| ribonuclease III [Burkholderia pseudomallei 14]
 gi|254258167|ref|ZP_04949221.1| ribonuclease III [Burkholderia pseudomallei 1710a]
 gi|76580968|gb|ABA50443.1| ribonuclease III [Burkholderia pseudomallei 1710b]
 gi|254216856|gb|EET06240.1| ribonuclease III [Burkholderia pseudomallei 1710a]
          Length = 467

 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 30  SATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISD 89

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 90  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 133


>gi|217420723|ref|ZP_03452228.1| ribonuclease III [Burkholderia pseudomallei 576]
 gi|237813195|ref|YP_002897646.1| ribonuclease III [Burkholderia pseudomallei MSHR346]
 gi|217396135|gb|EEC36152.1| ribonuclease III [Burkholderia pseudomallei 576]
 gi|237506043|gb|ACQ98361.1| ribonuclease III [Burkholderia pseudomallei MSHR346]
          Length = 467

 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 30  SATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISD 89

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 90  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 133


>gi|254184210|ref|ZP_04890800.1| ribonuclease III [Burkholderia pseudomallei 1655]
 gi|184214741|gb|EDU11784.1| ribonuclease III [Burkholderia pseudomallei 1655]
          Length = 467

 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 30  SATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISD 89

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 90  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 133


>gi|170781177|ref|YP_001709509.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus]
 gi|169155745|emb|CAQ00866.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus]
          Length = 238

 Score = 77.4 bits (189), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 3/130 (2%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I HNERLEFLGD+++    ++ L+   PD++EG LA  RA++V +  LA +A RIGL + 
Sbjct: 45  IPHNERLEFLGDSILGQAVTVMLYLENPDLDEGELAKRRASLVSSVALAEVATRIGLGEH 104

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK--DNEVRFKQW 937
           +L   G +L         +A+  EA++GA +LD G + A  +   ++    ++  RF   
Sbjct: 105 LLLGRGEELTGGRAKSSILADTVEAIIGASYLDAGGEAATGLVLRLIAPLLEDPARFGAA 164

Query: 938 MYYPQHPLQE 947
           M  P+  LQE
Sbjct: 165 M-DPKTALQE 173


>gi|154500966|ref|ZP_02039004.1| hypothetical protein BACCAP_04652 [Bacteroides capillosus ATCC
           29799]
 gi|150269990|gb|EDM97509.1| ribonuclease III [Pseudoflavonifractor capillosus ATCC 29799]
          Length = 223

 Score = 77.4 bits (189), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/195 (28%), Positives = 84/195 (43%), Gaps = 51/195 (26%)

Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
           LE+++ Y FQNR LL+ ALTH S                         Y +   H     
Sbjct: 4   LEEKLGYTFQNRALLENALTHSS-------------------------YANENKH----- 33

Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
                                +    NERLEFLGD+V+  +T+ +L+ V PD+ EG L  
Sbjct: 34  ---------------------TGAQSNERLEFLGDSVLGMVTADYLYRVHPDLPEGDLTR 72

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            RAA+V    L  +A+++ L  ++    G D     E    +A+  EA++ A++LDGGI 
Sbjct: 73  TRAALVCEGSLVEVAQQLELGTYLKLGKGEDAGGGRERPSIVADAVEAVLAAVYLDGGIG 132

Query: 917 VADQVFSSVLYKDNE 931
            A ++    +    E
Sbjct: 133 SARKIIQRFILDREE 147



 Score = 46.6 bits (109), Expect = 0.074,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 966  LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG--SNQRLEFLGDTVLQLITSDYLY 1022
            ++ LE   G  F +  LL    T  S    N   G  SN+RLEFLGD+VL ++T+DYLY
Sbjct: 1    MEKLEEKLGYTFQNRALLENALTHSSYANENKHTGAQSNERLEFLGDSVLGMVTADYLY 59


>gi|148272538|ref|YP_001222099.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830468|emb|CAN01403.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
          Length = 238

 Score = 77.4 bits (189), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 3/130 (2%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I HNERLEFLGD+++    ++ L+   PD++EG LA  RA++V +  LA +A RIGL + 
Sbjct: 45  IPHNERLEFLGDSILGQAVTVMLYLENPDLDEGELAKRRASLVSSVALAEVATRIGLGEH 104

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK--DNEVRFKQW 937
           +L   G +L         +A+  EA++GA +LD G + A  +   ++    ++  RF   
Sbjct: 105 LLLGRGEELTGGRAKSSILADTVEAIIGASYLDAGGEAATGLVLRLIAPLLEDPARFGAA 164

Query: 938 MYYPQHPLQE 947
           M  P+  LQE
Sbjct: 165 M-DPKTALQE 173


>gi|134277308|ref|ZP_01764023.1| ribonuclease III [Burkholderia pseudomallei 305]
 gi|134250958|gb|EBA51037.1| ribonuclease III [Burkholderia pseudomallei 305]
          Length = 467

 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 30  SATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISD 89

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 90  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 133


>gi|392541348|ref|ZP_10288485.1| RNase III, ds RNA [Pseudoalteromonas piscicida JCM 20779]
 gi|409202181|ref|ZP_11230384.1| RNase III, ds RNA [Pseudoalteromonas flavipulchra JG1]
          Length = 225

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 1/103 (0%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ F+ +  L+H FP   EG L+  R+ +V+ Q LA       L D++ 
Sbjct: 35  HNERLEFLGDSILSFVIANALYHKFPKAREGDLSRMRSTLVRGQTLAEFGVEFALGDYLR 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA-DQVFS 923
              G         +  +A+  EA++GA+FLD  IDV  D V S
Sbjct: 95  LGPGELKSGGFRRESTLADAVEAIIGAVFLDSDIDVCRDLVLS 137


>gi|333923291|ref|YP_004496871.1| ribonuclease 3 [Desulfotomaculum carboxydivorans CO-1-SRB]
 gi|333748852|gb|AEF93959.1| Ribonuclease 3 [Desulfotomaculum carboxydivorans CO-1-SRB]
          Length = 246

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 59/100 (59%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
            + HN+RLEFLGDAV+E + S +L+  FPD  EG L   RAA V    LA +A+ + L  
Sbjct: 42  GLHHNQRLEFLGDAVLELLISEYLYQRFPDRTEGELTKMRAASVCEPSLAKVARGLDLGR 101

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
            +    G +     E    +A+ FEAL+GA++LD G++ A
Sbjct: 102 CLRMGRGEERSGGRERPSILADAFEALLGAIYLDHGLEAA 141


>gi|69246105|ref|ZP_00603811.1| Ribonuclease III [Enterococcus faecium DO]
 gi|257878770|ref|ZP_05658423.1| ribonuclease III [Enterococcus faecium 1,230,933]
 gi|257881410|ref|ZP_05661063.1| ribonuclease III [Enterococcus faecium 1,231,502]
 gi|257885678|ref|ZP_05665331.1| ribonuclease III [Enterococcus faecium 1,231,501]
 gi|257887975|ref|ZP_05667628.1| ribonuclease III [Enterococcus faecium 1,141,733]
 gi|257890628|ref|ZP_05670281.1| ribonuclease III [Enterococcus faecium 1,231,410]
 gi|257893222|ref|ZP_05672875.1| ribonuclease III [Enterococcus faecium 1,231,408]
 gi|257896407|ref|ZP_05676060.1| ribonuclease III [Enterococcus faecium Com12]
 gi|257899381|ref|ZP_05679034.1| ribonuclease III [Enterococcus faecium Com15]
 gi|260558338|ref|ZP_05830534.1| ribonuclease III [Enterococcus faecium C68]
 gi|261207043|ref|ZP_05921732.1| ribonuclease III [Enterococcus faecium TC 6]
 gi|289565324|ref|ZP_06445774.1| ribonuclease III [Enterococcus faecium D344SRF]
 gi|293379492|ref|ZP_06625636.1| ribonuclease III [Enterococcus faecium PC4.1]
 gi|293556818|ref|ZP_06675379.1| ribonuclease III [Enterococcus faecium E1039]
 gi|293562991|ref|ZP_06677458.1| ribonuclease III [Enterococcus faecium E1162]
 gi|293567880|ref|ZP_06679221.1| ribonuclease III [Enterococcus faecium E1071]
 gi|293570730|ref|ZP_06681780.1| ribonuclease III [Enterococcus faecium E980]
 gi|294614479|ref|ZP_06694394.1| ribonuclease III [Enterococcus faecium E1636]
 gi|294618515|ref|ZP_06698077.1| ribonuclease III [Enterococcus faecium E1679]
 gi|294621998|ref|ZP_06701142.1| ribonuclease III [Enterococcus faecium U0317]
 gi|383327459|ref|YP_005353343.1| ribonuclease III [Enterococcus faecium Aus0004]
 gi|406580108|ref|ZP_11055328.1| ribonuclease III [Enterococcus sp. GMD4E]
 gi|406582771|ref|ZP_11057868.1| ribonuclease III [Enterococcus sp. GMD3E]
 gi|406585121|ref|ZP_11060116.1| ribonuclease III [Enterococcus sp. GMD2E]
 gi|410938000|ref|ZP_11369858.1| ribonuclease III [Enterococcus sp. GMD5E]
 gi|415897961|ref|ZP_11551209.1| ribonuclease III [Enterococcus faecium E4453]
 gi|416134603|ref|ZP_11598307.1| ribonuclease III [Enterococcus faecium E4452]
 gi|427396987|ref|ZP_18889613.1| ribonuclease 3 [Enterococcus durans FB129-CNAB-4]
 gi|430820973|ref|ZP_19439591.1| ribonuclease 3 [Enterococcus faecium E0045]
 gi|430823321|ref|ZP_19441893.1| ribonuclease 3 [Enterococcus faecium E0120]
 gi|430826392|ref|ZP_19444576.1| ribonuclease 3 [Enterococcus faecium E0164]
 gi|430828822|ref|ZP_19446936.1| ribonuclease 3 [Enterococcus faecium E0269]
 gi|430831864|ref|ZP_19449912.1| ribonuclease 3 [Enterococcus faecium E0333]
 gi|430834832|ref|ZP_19452834.1| ribonuclease 3 [Enterococcus faecium E0679]
 gi|430836416|ref|ZP_19454397.1| ribonuclease 3 [Enterococcus faecium E0680]
 gi|430839338|ref|ZP_19457279.1| ribonuclease 3 [Enterococcus faecium E0688]
 gi|430842447|ref|ZP_19460362.1| ribonuclease 3 [Enterococcus faecium E1007]
 gi|430843103|ref|ZP_19461005.1| ribonuclease 3 [Enterococcus faecium E1050]
 gi|430850746|ref|ZP_19468503.1| ribonuclease 3 [Enterococcus faecium E1185]
 gi|430853246|ref|ZP_19470976.1| ribonuclease 3 [Enterococcus faecium E1258]
 gi|430855706|ref|ZP_19473412.1| ribonuclease 3 [Enterococcus faecium E1392]
 gi|430858967|ref|ZP_19476585.1| ribonuclease 3 [Enterococcus faecium E1552]
 gi|430861281|ref|ZP_19478870.1| ribonuclease 3 [Enterococcus faecium E1573]
 gi|430866354|ref|ZP_19481631.1| ribonuclease 3 [Enterococcus faecium E1574]
 gi|430892080|ref|ZP_19484486.1| ribonuclease 3 [Enterococcus faecium E1575]
 gi|430952324|ref|ZP_19486367.1| ribonuclease 3 [Enterococcus faecium E1576]
 gi|430999207|ref|ZP_19488175.1| ribonuclease 3 [Enterococcus faecium E1578]
 gi|431036460|ref|ZP_19492230.1| ribonuclease 3 [Enterococcus faecium E1590]
 gi|431081664|ref|ZP_19495754.1| ribonuclease 3 [Enterococcus faecium E1604]
 gi|431118143|ref|ZP_19498097.1| ribonuclease 3 [Enterococcus faecium E1613]
 gi|431209600|ref|ZP_19500961.1| ribonuclease 3 [Enterococcus faecium E1620]
 gi|431234955|ref|ZP_19502978.1| ribonuclease 3 [Enterococcus faecium E1622]
 gi|431255661|ref|ZP_19504784.1| ribonuclease 3 [Enterococcus faecium E1623]
 gi|431303493|ref|ZP_19508340.1| ribonuclease 3 [Enterococcus faecium E1626]
 gi|431380466|ref|ZP_19510847.1| ribonuclease 3 [Enterococcus faecium E1627]
 gi|431438089|ref|ZP_19513252.1| ribonuclease 3 [Enterococcus faecium E1630]
 gi|431506848|ref|ZP_19515674.1| ribonuclease 3 [Enterococcus faecium E1634]
 gi|431545032|ref|ZP_19518673.1| ribonuclease 3 [Enterococcus faecium E1731]
 gi|431592292|ref|ZP_19521528.1| ribonuclease 3 [Enterococcus faecium E1861]
 gi|431695910|ref|ZP_19524804.1| ribonuclease 3 [Enterococcus faecium E1904]
 gi|431739025|ref|ZP_19527965.1| ribonuclease 3 [Enterococcus faecium E1972]
 gi|431740695|ref|ZP_19529606.1| ribonuclease 3 [Enterococcus faecium E2039]
 gi|431744016|ref|ZP_19532889.1| ribonuclease 3 [Enterococcus faecium E2071]
 gi|431747189|ref|ZP_19535988.1| ribonuclease 3 [Enterococcus faecium E2134]
 gi|431749381|ref|ZP_19538122.1| ribonuclease 3 [Enterococcus faecium E2297]
 gi|431753069|ref|ZP_19541747.1| ribonuclease 3 [Enterococcus faecium E2620]
 gi|431755895|ref|ZP_19544537.1| ribonuclease 3 [Enterococcus faecium E2883]
 gi|431757896|ref|ZP_19546525.1| ribonuclease 3 [Enterococcus faecium E3083]
 gi|431760118|ref|ZP_19548722.1| ribonuclease 3 [Enterococcus faecium E3346]
 gi|431763163|ref|ZP_19551716.1| ribonuclease 3 [Enterococcus faecium E3548]
 gi|431764954|ref|ZP_19553480.1| ribonuclease 3 [Enterococcus faecium E4215]
 gi|431768030|ref|ZP_19556471.1| ribonuclease 3 [Enterococcus faecium E1321]
 gi|431769465|ref|ZP_19557875.1| ribonuclease 3 [Enterococcus faecium E1644]
 gi|431773324|ref|ZP_19561650.1| ribonuclease 3 [Enterococcus faecium E2369]
 gi|431776421|ref|ZP_19564683.1| ribonuclease 3 [Enterococcus faecium E2560]
 gi|431779658|ref|ZP_19567850.1| ribonuclease 3 [Enterococcus faecium E4389]
 gi|431782539|ref|ZP_19570672.1| ribonuclease 3 [Enterococcus faecium E6012]
 gi|431784360|ref|ZP_19572402.1| ribonuclease 3 [Enterococcus faecium E6045]
 gi|447911625|ref|YP_007393037.1| Ribonuclease III [Enterococcus faecium NRRL B-2354]
 gi|68195400|gb|EAN09847.1| Ribonuclease III [Enterococcus faecium DO]
 gi|257812998|gb|EEV41756.1| ribonuclease III [Enterococcus faecium 1,230,933]
 gi|257817068|gb|EEV44396.1| ribonuclease III [Enterococcus faecium 1,231,502]
 gi|257821534|gb|EEV48664.1| ribonuclease III [Enterococcus faecium 1,231,501]
 gi|257824029|gb|EEV50961.1| ribonuclease III [Enterococcus faecium 1,141,733]
 gi|257826988|gb|EEV53614.1| ribonuclease III [Enterococcus faecium 1,231,410]
 gi|257829601|gb|EEV56208.1| ribonuclease III [Enterococcus faecium 1,231,408]
 gi|257832972|gb|EEV59393.1| ribonuclease III [Enterococcus faecium Com12]
 gi|257837293|gb|EEV62367.1| ribonuclease III [Enterococcus faecium Com15]
 gi|260075512|gb|EEW63818.1| ribonuclease III [Enterococcus faecium C68]
 gi|260078671|gb|EEW66373.1| ribonuclease III [Enterococcus faecium TC 6]
 gi|289162814|gb|EFD10664.1| ribonuclease III [Enterococcus faecium D344SRF]
 gi|291589465|gb|EFF21272.1| ribonuclease III [Enterococcus faecium E1071]
 gi|291592656|gb|EFF24250.1| ribonuclease III [Enterococcus faecium E1636]
 gi|291595215|gb|EFF26546.1| ribonuclease III [Enterococcus faecium E1679]
 gi|291598425|gb|EFF29498.1| ribonuclease III [Enterococcus faecium U0317]
 gi|291600902|gb|EFF31193.1| ribonuclease III [Enterococcus faecium E1039]
 gi|291605117|gb|EFF34584.1| ribonuclease III [Enterococcus faecium E1162]
 gi|291609202|gb|EFF38474.1| ribonuclease III [Enterococcus faecium E980]
 gi|292642015|gb|EFF60181.1| ribonuclease III [Enterococcus faecium PC4.1]
 gi|364090286|gb|EHM32892.1| ribonuclease III [Enterococcus faecium E4453]
 gi|364092476|gb|EHM34848.1| ribonuclease III [Enterococcus faecium E4452]
 gi|378937153|gb|AFC62225.1| ribonuclease III [Enterococcus faecium Aus0004]
 gi|404454612|gb|EKA01534.1| ribonuclease III [Enterococcus sp. GMD4E]
 gi|404457508|gb|EKA04045.1| ribonuclease III [Enterococcus sp. GMD3E]
 gi|404463103|gb|EKA08801.1| ribonuclease III [Enterococcus sp. GMD2E]
 gi|410733639|gb|EKQ75562.1| ribonuclease III [Enterococcus sp. GMD5E]
 gi|425722734|gb|EKU85628.1| ribonuclease 3 [Enterococcus durans FB129-CNAB-4]
 gi|430438958|gb|ELA49349.1| ribonuclease 3 [Enterococcus faecium E0045]
 gi|430442419|gb|ELA52464.1| ribonuclease 3 [Enterococcus faecium E0120]
 gi|430445116|gb|ELA54900.1| ribonuclease 3 [Enterococcus faecium E0164]
 gi|430480505|gb|ELA57679.1| ribonuclease 3 [Enterococcus faecium E0333]
 gi|430482717|gb|ELA59822.1| ribonuclease 3 [Enterococcus faecium E0269]
 gi|430484901|gb|ELA61848.1| ribonuclease 3 [Enterococcus faecium E0679]
 gi|430488543|gb|ELA65214.1| ribonuclease 3 [Enterococcus faecium E0680]
 gi|430490796|gb|ELA67292.1| ribonuclease 3 [Enterococcus faecium E0688]
 gi|430493528|gb|ELA69831.1| ribonuclease 3 [Enterococcus faecium E1007]
 gi|430498157|gb|ELA74165.1| ribonuclease 3 [Enterococcus faecium E1050]
 gi|430535105|gb|ELA75528.1| ribonuclease 3 [Enterococcus faecium E1185]
 gi|430541068|gb|ELA81245.1| ribonuclease 3 [Enterococcus faecium E1258]
 gi|430544486|gb|ELA84515.1| ribonuclease 3 [Enterococcus faecium E1552]
 gi|430546248|gb|ELA86210.1| ribonuclease 3 [Enterococcus faecium E1392]
 gi|430550314|gb|ELA90111.1| ribonuclease 3 [Enterococcus faecium E1573]
 gi|430551582|gb|ELA91333.1| ribonuclease 3 [Enterococcus faecium E1574]
 gi|430555745|gb|ELA95280.1| ribonuclease 3 [Enterococcus faecium E1575]
 gi|430557459|gb|ELA96918.1| ribonuclease 3 [Enterococcus faecium E1576]
 gi|430563000|gb|ELB02231.1| ribonuclease 3 [Enterococcus faecium E1590]
 gi|430563314|gb|ELB02543.1| ribonuclease 3 [Enterococcus faecium E1578]
 gi|430565596|gb|ELB04742.1| ribonuclease 3 [Enterococcus faecium E1604]
 gi|430568100|gb|ELB07157.1| ribonuclease 3 [Enterococcus faecium E1613]
 gi|430570632|gb|ELB09578.1| ribonuclease 3 [Enterococcus faecium E1620]
 gi|430572815|gb|ELB11651.1| ribonuclease 3 [Enterococcus faecium E1622]
 gi|430577859|gb|ELB16439.1| ribonuclease 3 [Enterococcus faecium E1623]
 gi|430580134|gb|ELB18614.1| ribonuclease 3 [Enterococcus faecium E1626]
 gi|430582334|gb|ELB20761.1| ribonuclease 3 [Enterococcus faecium E1627]
 gi|430586924|gb|ELB25166.1| ribonuclease 3 [Enterococcus faecium E1630]
 gi|430587235|gb|ELB25468.1| ribonuclease 3 [Enterococcus faecium E1634]
 gi|430591917|gb|ELB29944.1| ribonuclease 3 [Enterococcus faecium E1861]
 gi|430592080|gb|ELB30102.1| ribonuclease 3 [Enterococcus faecium E1731]
 gi|430596568|gb|ELB34392.1| ribonuclease 3 [Enterococcus faecium E1972]
 gi|430597863|gb|ELB35645.1| ribonuclease 3 [Enterococcus faecium E1904]
 gi|430602778|gb|ELB40328.1| ribonuclease 3 [Enterococcus faecium E2039]
 gi|430606079|gb|ELB43451.1| ribonuclease 3 [Enterococcus faecium E2071]
 gi|430606718|gb|ELB44056.1| ribonuclease 3 [Enterococcus faecium E2134]
 gi|430611510|gb|ELB48591.1| ribonuclease 3 [Enterococcus faecium E2297]
 gi|430612817|gb|ELB49848.1| ribonuclease 3 [Enterococcus faecium E2620]
 gi|430616010|gb|ELB52935.1| ribonuclease 3 [Enterococcus faecium E2883]
 gi|430618401|gb|ELB55248.1| ribonuclease 3 [Enterococcus faecium E3083]
 gi|430622857|gb|ELB59567.1| ribonuclease 3 [Enterococcus faecium E3548]
 gi|430625387|gb|ELB62027.1| ribonuclease 3 [Enterococcus faecium E3346]
 gi|430629725|gb|ELB66114.1| ribonuclease 3 [Enterococcus faecium E4215]
 gi|430629759|gb|ELB66147.1| ribonuclease 3 [Enterococcus faecium E1321]
 gi|430636747|gb|ELB72807.1| ribonuclease 3 [Enterococcus faecium E2369]
 gi|430637040|gb|ELB73084.1| ribonuclease 3 [Enterococcus faecium E1644]
 gi|430640972|gb|ELB76793.1| ribonuclease 3 [Enterococcus faecium E2560]
 gi|430641420|gb|ELB77222.1| ribonuclease 3 [Enterococcus faecium E4389]
 gi|430647176|gb|ELB82624.1| ribonuclease 3 [Enterococcus faecium E6012]
 gi|430649934|gb|ELB85301.1| ribonuclease 3 [Enterococcus faecium E6045]
 gi|445187334|gb|AGE28976.1| Ribonuclease III [Enterococcus faecium NRRL B-2354]
          Length = 228

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 60/108 (55%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           ++ NERLEFLGDAV+E + S +LF ++P + EG L   RAAIV+   L+  AK    + +
Sbjct: 41  LSDNERLEFLGDAVLELMVSQYLFRLYPHLPEGKLTKTRAAIVREDSLSKFAKECHFDQY 100

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          + + FEA +GAL+LD G D        V++
Sbjct: 101 VLLGKGEENSGGRTRPALLCDLFEAFLGALYLDQGFDTTHAFIEKVIF 148



 Score = 46.6 bits (109), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query: 975  VIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            ++F+ + LL + FT  S    + NL L  N+RLEFLGD VL+L+ S YL+
Sbjct: 15   IVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLF 64


>gi|255017842|ref|ZP_05289968.1| ribonuclease III [Listeria monocytogenes FSL F2-515]
          Length = 158

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/109 (36%), Positives = 59/109 (54%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           N+  NERLEFLGDAV+E   S +LF+ +PD+ EG +   RAAIV    L   A+ +    
Sbjct: 38  NVKDNERLEFLGDAVLELTVSDYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSX 97

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           ++    G +          +A+ FE+ +GAL+LD GID        V++
Sbjct: 98  YVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVTFLERVIF 146



 Score = 47.0 bits (110), Expect = 0.050,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 6/64 (9%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 1018
            + Q + L+ S G  F ++ LL + FT  S  Y N      +  N+RLEFLGD VL+L  S
Sbjct: 1    MNQWEELQESVGFDFKNVELLKQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 1019 DYLY 1022
            DYL+
Sbjct: 59   DYLF 62


>gi|222055246|ref|YP_002537608.1| Ribonuclease III [Geobacter daltonii FRC-32]
 gi|221564535|gb|ACM20507.1| Ribonuclease III [Geobacter daltonii FRC-32]
          Length = 238

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 63/203 (31%), Positives = 85/203 (41%), Gaps = 55/203 (27%)

Query: 732 RSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIH 791
           +S+  LE  I Y F ++ LL  ALTHPS+    G              VRQ         
Sbjct: 7   KSIAALEKLINYDFTDKSLLVEALTHPSFVNESGGK------------VRQ--------- 45

Query: 792 FQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEE 851
                                          N+RLEFLGDAVV  + S  LF  FPD  E
Sbjct: 46  ------------------------------DNQRLEFLGDAVVGLVLSHDLFSRFPDSRE 75

Query: 852 GGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFL 911
           G L   RA++V    LA LA+ I L   +    G +          +A+ +EAL+ A++L
Sbjct: 76  GELTKLRASLVDEASLAILARAIDLGAHLKLGRGEERSGGRTKPSLLADAYEALLAAVYL 135

Query: 912 DGGIDVADQV----FSSVLYKDN 930
           DGGI+ A  +    F+S + K N
Sbjct: 136 DGGIEPAAAIIKSHFASFMEKRN 158


>gi|448933294|gb|AGE56850.1| RNase III [Acanthocystis turfacea Chlorella virus NE-JV-3]
          Length = 268

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 2/113 (1%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           E N    ERLEFLGD+V+ F+ + +L+ VFP   EG L   R   V  + L+ LA ++GL
Sbjct: 71  EENGETFERLEFLGDSVLGFLIARYLYDVFPGKNEGVLTRLRVKFVSGKLLSKLAHQLGL 130

Query: 877 EDFMLYAH-GSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 928
            +F++ +  G   C     K  + + FEAL+GA++LD GI+ A Q   SVL K
Sbjct: 131 HEFIIMSQKGLYRCWHTNPK-TLEDAFEALIGAIYLDLGINAARQFLMSVLTK 182


>gi|52424423|ref|YP_087560.1| ribonuclease III [Mannheimia succiniciproducens MBEL55E]
 gi|81387548|sp|Q65VN5.1|RNC_MANSM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|52306475|gb|AAU36975.1| Rnc protein [Mannheimia succiniciproducens MBEL55E]
          Length = 224

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 59/100 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDA++ +  +  L+H FP   EG L+  RA +V+   LA LA++  L ++M 
Sbjct: 34  HNERLEFLGDAILNYTIADALYHQFPKCNEGELSRMRATLVREPTLAILARQFKLGEYMA 93

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
             HG         +  +A+C EA++GA+ LD  +  A Q+
Sbjct: 94  LGHGELKSGGFRRESILADCVEAIIGAISLDSSLVSATQI 133


>gi|332981630|ref|YP_004463071.1| ribonuclease III [Mahella australiensis 50-1 BON]
 gi|332699308|gb|AEE96249.1| ribonuclease III [Mahella australiensis 50-1 BON]
          Length = 228

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/105 (37%), Positives = 62/105 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLE LGD+V+  I + +LF  +P++ EG L+  R+ IV  + L  +A  + L  ++L
Sbjct: 39  YNERLELLGDSVLNIIITDYLFVTYPELSEGNLSKLRSNIVSEKPLYKVAAAMNLGSYLL 98

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
            + G  L H       +A+  EA++GA++LDGG D A     S+L
Sbjct: 99  LSRGEKLSHGDMRPSTLADTVEAIIGAVYLDGGFDAAKVFVLSLL 143


>gi|226199978|ref|ZP_03795528.1| ribonuclease III [Burkholderia pseudomallei Pakistan 9]
 gi|386860993|ref|YP_006273942.1| ribonuclease III [Burkholderia pseudomallei 1026b]
 gi|403519510|ref|YP_006653644.1| ribonuclease III [Burkholderia pseudomallei BPC006]
 gi|418533464|ref|ZP_13099331.1| ribonuclease III [Burkholderia pseudomallei 1026a]
 gi|418540256|ref|ZP_13105815.1| ribonuclease III [Burkholderia pseudomallei 1258a]
 gi|418546503|ref|ZP_13111721.1| ribonuclease III [Burkholderia pseudomallei 1258b]
 gi|225928034|gb|EEH24071.1| ribonuclease III [Burkholderia pseudomallei Pakistan 9]
 gi|385361499|gb|EIF67384.1| ribonuclease III [Burkholderia pseudomallei 1026a]
 gi|385362397|gb|EIF68214.1| ribonuclease III [Burkholderia pseudomallei 1258a]
 gi|385364557|gb|EIF70269.1| ribonuclease III [Burkholderia pseudomallei 1258b]
 gi|385658121|gb|AFI65544.1| ribonuclease III [Burkholderia pseudomallei 1026b]
 gi|403075153|gb|AFR16733.1| ribonuclease III [Burkholderia pseudomallei BPC006]
          Length = 462

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 25  SATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISD 84

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 85  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 128


>gi|430848263|ref|ZP_19466089.1| ribonuclease 3 [Enterococcus faecium E1133]
 gi|430535606|gb|ELA76006.1| ribonuclease 3 [Enterococcus faecium E1133]
          Length = 228

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 60/108 (55%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           ++ NERLEFLGDAV+E + S +LF ++P + EG L   RAAIV+   L+  AK    + +
Sbjct: 41  LSDNERLEFLGDAVLELMVSQYLFRLYPHLPEGKLTKTRAAIVREDSLSKFAKECHFDQY 100

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          + + FEA +GAL+LD G D        V++
Sbjct: 101 VLLGKGEENSGGRTRPALLCDLFEAFLGALYLDQGFDTTHAFIEKVIF 148



 Score = 46.6 bits (109), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query: 975  VIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            ++F+ + LL + FT  S    + NL L  N+RLEFLGD VL+L+ S YL+
Sbjct: 15   IVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLF 64


>gi|388602698|ref|ZP_10161094.1| ribonuclease III [Vibrio campbellii DS40M4]
          Length = 225

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANSKHNERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGHTLAELGREFDLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS------------V 925
           D++    G            +A+  EA++GA++LD  I+    +  S            V
Sbjct: 91  DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEQVRGIVLSWYNSRLKAIKPGV 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|189184858|ref|YP_001938643.1| ribonuclease III [Orientia tsutsugamushi str. Ikeda]
 gi|189181629|dbj|BAG41409.1| ribonuclease III [Orientia tsutsugamushi str. Ikeda]
          Length = 246

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 6/127 (4%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           +RLEFLGD ++  + S  LF  F    EG LA  RA +V N+ +  +A++I L  +++  
Sbjct: 55  QRLEFLGDVILNLVISETLFKNFSHYNEGKLAKSRAFLVCNESICLIAQKINLHKYIIMT 114

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS---VLYKDNEVRFKQWMYY 940
              + C     K+ + N  EA++GA++LDGGI V   + +S   VL KD+E+     +  
Sbjct: 115 ANEEKCGGRSNKNNIENTMEAVIGAVYLDGGIHVIKDIVNSLWKVLIKDHELYL---IAD 171

Query: 941 PQHPLQE 947
           P+  LQE
Sbjct: 172 PKSALQE 178


>gi|78065718|ref|YP_368487.1| ribonuclease III [Burkholderia sp. 383]
 gi|77966463|gb|ABB07843.1| RNAse III [Burkholderia sp. 383]
          Length = 408

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 30  SATHNERLEFLGDSVLNCAVAALLFQRFSKLDEGDLSRVRANLVKQQSLYEIAQALNISD 89

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 90  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 133


>gi|448932299|gb|AGE55858.1| RNase III [Acanthocystis turfacea Chlorella virus MO0605SPH]
          Length = 268

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 2/113 (1%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           E N    ERLEFLGD+V+ F+ + +L+ VFP   EG L   R   V  + L+ LA ++GL
Sbjct: 71  EENGETFERLEFLGDSVLGFLIARYLYDVFPGKNEGVLTRLRVKFVSGKLLSKLAHQLGL 130

Query: 877 EDFMLYAH-GSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 928
            +F++ +  G   C     K  + + FEAL+GA++LD GI+ A Q   SVL K
Sbjct: 131 HEFIIMSQKGLYRCWHTNPK-TLEDAFEALIGAIYLDLGINAARQFLMSVLTK 182


>gi|448931963|gb|AGE55523.1| RNase III [Acanthocystis turfacea Chlorella virus MN0810.1]
          Length = 254

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 2/113 (1%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           E N    ERLEFLGD+V+ F+ + +L+ VFP   EG L   R   V  + L+ LA +IGL
Sbjct: 57  EENGETFERLEFLGDSVLGFLIARYLYDVFPGKNEGVLTRLRVKFVSGKLLSKLAHQIGL 116

Query: 877 EDFMLYAH-GSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 928
            +F++ +  G   C     K  + + FEAL+GA++LD GI+ A Q   SVL K
Sbjct: 117 HEFIIMSQKGLYRCWHTNPK-TLEDSFEALIGAIYLDLGINAARQFLMSVLTK 168


>gi|416052977|ref|ZP_11578612.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype e
           str. SC1083]
 gi|418464980|ref|ZP_13035919.1| ribonuclease III [Aggregatibacter actinomycetemcomitans RhAA1]
 gi|347991769|gb|EGY33232.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype e
           str. SC1083]
 gi|359756935|gb|EHK91092.1| ribonuclease III [Aggregatibacter actinomycetemcomitans RhAA1]
          Length = 226

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 75/146 (51%), Gaps = 16/146 (10%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDA++       LFH FP   EG L+  RA +V+   LA LA+   L D++L
Sbjct: 36  HNERLEFLGDAILNLTIGEALFHQFPKCNEGELSRMRATLVREPTLALLARDFKLGDYIL 95

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYP 941
              G         +  +A+C EA++GA+ LD  +  A Q+             +QW    
Sbjct: 96  LGQGEFKSGGFRRESILADCVEAIIGAISLDSNLTNATQI------------VRQWY--- 140

Query: 942 QHPLQEQEPDGDRQWVEQSPLLKQLQ 967
           Q+ L+E +P GD Q   ++ L + LQ
Sbjct: 141 QNLLKEIKP-GDNQKDAKTRLQEYLQ 165


>gi|25010800|ref|NP_735195.1| ribonuclease III [Streptococcus agalactiae NEM316]
 gi|76788414|ref|YP_329471.1| ribonuclease III [Streptococcus agalactiae A909]
 gi|76798198|ref|ZP_00780449.1| ribonuclease III [Streptococcus agalactiae 18RS21]
 gi|77406421|ref|ZP_00783480.1| ribonuclease III [Streptococcus agalactiae H36B]
 gi|77408361|ref|ZP_00785102.1| ribonuclease III [Streptococcus agalactiae COH1]
 gi|77410795|ref|ZP_00787153.1| ribonuclease III [Streptococcus agalactiae CJB111]
 gi|77413080|ref|ZP_00789281.1| ribonuclease III [Streptococcus agalactiae 515]
 gi|406709215|ref|YP_006763941.1| ribonuclease III [Streptococcus agalactiae GD201008-001]
 gi|417004889|ref|ZP_11943528.1| ribonuclease III [Streptococcus agalactiae FSL S3-026]
 gi|421146996|ref|ZP_15606697.1| ribonuclease III [Streptococcus agalactiae GB00112]
 gi|421531466|ref|ZP_15977848.1| ribonuclease III [Streptococcus agalactiae STIR-CD-17]
 gi|424049712|ref|ZP_17787263.1| ribonuclease III [Streptococcus agalactiae ZQ0910]
 gi|81457210|sp|Q8E680.1|RNC_STRA3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101649|sp|Q3K1Y2.1|RNC_STRA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101650|sp|Q8E0K7.2|RNC_STRA5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|23095154|emb|CAD46389.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563471|gb|ABA46055.1| ribonuclease III [Streptococcus agalactiae A909]
 gi|76586461|gb|EAO62968.1| ribonuclease III [Streptococcus agalactiae 18RS21]
 gi|77160873|gb|EAO71983.1| ribonuclease III [Streptococcus agalactiae 515]
 gi|77163174|gb|EAO74127.1| ribonuclease III [Streptococcus agalactiae CJB111]
 gi|77173042|gb|EAO76170.1| ribonuclease III [Streptococcus agalactiae COH1]
 gi|77174985|gb|EAO77795.1| ribonuclease III [Streptococcus agalactiae H36B]
 gi|341577871|gb|EGS28278.1| ribonuclease III [Streptococcus agalactiae FSL S3-026]
 gi|389648793|gb|EIM70284.1| ribonuclease III [Streptococcus agalactiae ZQ0910]
 gi|401686411|gb|EJS82390.1| ribonuclease III [Streptococcus agalactiae GB00112]
 gi|403643289|gb|EJZ04071.1| ribonuclease III [Streptococcus agalactiae STIR-CD-17]
 gi|406650100|gb|AFS45501.1| ribonuclease III [Streptococcus agalactiae GD201008-001]
          Length = 228

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/108 (36%), Positives = 62/108 (57%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDAV++ + S +LF  +P   EG L+  R+ IV+ + LA  ++  G + 
Sbjct: 39  NISHNERLEFLGDAVLQLLISQYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDH 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           ++    G +          + + FEA +GAL LD G++V     + V+
Sbjct: 99  YIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGVEVVHAFVNKVM 146



 Score = 45.8 bits (107), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 7/65 (10%)

Query: 963  LKQLQY-LEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 1017
            +K+L+  LE   G++F +  LL   FT  S  Y N    L +  N+RLEFLGD VLQL+ 
Sbjct: 1    MKELRSKLEKDYGIVFANQELLDTAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLI 58

Query: 1018 SDYLY 1022
            S YL+
Sbjct: 59   SQYLF 63


>gi|22536887|ref|NP_687738.1| ribonuclease III [Streptococcus agalactiae 2603V/R]
 gi|339301800|ref|ZP_08650884.1| ribonuclease III [Streptococcus agalactiae ATCC 13813]
 gi|22533737|gb|AAM99610.1|AE014224_13 ribonuclease III [Streptococcus agalactiae 2603V/R]
 gi|319744744|gb|EFV97086.1| ribonuclease III [Streptococcus agalactiae ATCC 13813]
          Length = 236

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/108 (36%), Positives = 62/108 (57%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDAV++ + S +LF  +P   EG L+  R+ IV+ + LA  ++  G + 
Sbjct: 47  NISHNERLEFLGDAVLQLLISQYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDH 106

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           ++    G +          + + FEA +GAL LD G++V     + V+
Sbjct: 107 YIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGVEVVHAFVNKVM 154



 Score = 45.8 bits (107), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 7/65 (10%)

Query: 963  LKQLQY-LEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 1017
            +K+L+  LE   G++F +  LL   FT  S  Y N    L +  N+RLEFLGD VLQL+ 
Sbjct: 9    MKELRSKLEKDYGIVFANQELLDTAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLI 66

Query: 1018 SDYLY 1022
            S YL+
Sbjct: 67   SQYLF 71


>gi|51892591|ref|YP_075282.1| ribonuclease III [Symbiobacterium thermophilum IAM 14863]
 gi|81388984|sp|Q67PF5.1|RNC_SYMTH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|51856280|dbj|BAD40438.1| ribonuclease III [Symbiobacterium thermophilum IAM 14863]
          Length = 235

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/98 (38%), Positives = 61/98 (62%), Gaps = 1/98 (1%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGD+V+  + + HL+  +PD+ EG L   RAA+V    LA  A+ +G+   M +
Sbjct: 47  NERLEFLGDSVLGMVIAAHLYERYPDLPEGELTKIRAAVVCEPSLAERARVLGIGRHMRF 106

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ 920
             G  +    +    +++ FEA++GAL+LDGG++ A +
Sbjct: 107 GRGEAVSGR-DRDSTLSDAFEAVVGALYLDGGLEAAQR 143


>gi|365904207|ref|ZP_09441966.1| ribonuclease III [Lactobacillus versmoldensis KCTC 3814]
          Length = 229

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 62/111 (55%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           E NI   ERLEFLGDAV+E   S +LF  FP++ EG L   R+ IV+    A  AK+I +
Sbjct: 39  ELNIGDYERLEFLGDAVLEINISEYLFTHFPELPEGKLTRLRSDIVRTDSFAKFAKQIHI 98

Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           + ++    G +          + + FEA  GAL+LD G DV +Q  + V+Y
Sbjct: 99  DKYLQIGRGEEKQGARSRHTLLEDIFEAFNGALYLDQGNDVVEQFLTQVVY 149



 Score = 41.6 bits (96), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 964  KQLQYLEYSSGVIFNHIRLLARVFTTRSMG--YTNLTLGSNQRLEFLGDTVLQLITSDYL 1021
            K  + L+   G+ FN  +++ R  T  S    +  L +G  +RLEFLGD VL++  S+YL
Sbjct: 5    KFFELLKEDYGITFNDKKMVERAMTHSSYDNEHKELNIGDYERLEFLGDAVLEINISEYL 64

Query: 1022 Y 1022
            +
Sbjct: 65   F 65


>gi|393762804|ref|ZP_10351430.1| ribonuclease III [Alishewanella agri BL06]
 gi|392606426|gb|EIW89311.1| ribonuclease III [Alishewanella agri BL06]
          Length = 225

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 57/95 (60%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDA++  I +  LF  FP   EG L   R+A+V+   LA +A+ +GL DF+ 
Sbjct: 36  HNERLEFLGDALLGLIIAEALFARFPQTREGDLTRMRSALVKGVTLASIAQELGLSDFLR 95

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
              G         +  +A+  EA++GA++LD G+D
Sbjct: 96  LGPGELKSGGYRRESILADALEAILGAIYLDSGMD 130


>gi|15601926|ref|NP_244998.1| ribonuclease III [Pasteurella multocida subsp. multocida str. Pm70]
 gi|378774875|ref|YP_005177118.1| ribonuclease 3 [Pasteurella multocida 36950]
 gi|386834840|ref|YP_006240157.1| ribonuclease III [Pasteurella multocida subsp. multocida str. 3480]
 gi|13431826|sp|P57805.1|RNC_PASMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|12720269|gb|AAK02145.1| Rnc [Pasteurella multocida subsp. multocida str. Pm70]
 gi|356597423|gb|AET16149.1| ribonuclease 3 [Pasteurella multocida 36950]
 gi|385201543|gb|AFI46398.1| ribonuclease III [Pasteurella multocida subsp. multocida str. 3480]
          Length = 225

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 60/104 (57%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           + + HNERLEFLGDA++ FI +  L+H FP   EG L+  RA +V+   LA LA++  L 
Sbjct: 31  AAVKHNERLEFLGDAILNFIIAEALYHQFPKCNEGELSRMRATLVREPTLASLARQFELG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           D++    G         +  +A+C EA++GA+ LD  +    ++
Sbjct: 91  DYLSLGPGELKSGGFRRESILADCVEAIIGAISLDSDLATTTKI 134


>gi|424034031|ref|ZP_17773441.1| ribonuclease III [Vibrio cholerae HENC-01]
 gi|424042893|ref|ZP_17780558.1| ribonuclease III [Vibrio cholerae HENC-02]
 gi|408873775|gb|EKM12964.1| ribonuclease III [Vibrio cholerae HENC-01]
 gi|408884698|gb|EKM23431.1| ribonuclease III [Vibrio cholerae HENC-02]
          Length = 225

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANSKHNERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGHTLAELGREFDLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS------------V 925
           D++    G            +A+  EA++GA++LD  I+    +  S            V
Sbjct: 91  DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEQVRGIVLSWYNSRLEAIKPGV 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|262166502|ref|ZP_06034239.1| ribonuclease III [Vibrio mimicus VM223]
 gi|262026218|gb|EEY44886.1| ribonuclease III [Vibrio mimicus VM223]
          Length = 225

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANGKHNERLEFLGDSILSFVIADELYHRFPKVNEGDMSRMRATLVRGNTLAELGREFDLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSV 925
           D++    G            +A+  EA++GA++LD  ++ A            +++    
Sbjct: 91  DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSELETARRIVLEWYHCRLEEIKPGA 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|238026617|ref|YP_002910848.1| ribonuclease III [Burkholderia glumae BGR1]
 gi|237875811|gb|ACR28144.1| Ribonuclease III [Burkholderia glumae BGR1]
          Length = 427

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 30  SATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNIAD 89

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 90  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 133


>gi|417853302|ref|ZP_12498712.1| ribonuclease III [Pasteurella multocida subsp. multocida str.
           Anand1_goat]
 gi|338219907|gb|EGP05498.1| ribonuclease III [Pasteurella multocida subsp. multocida str.
           Anand1_goat]
          Length = 225

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 60/104 (57%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           + + HNERLEFLGDA++ FI +  L+H FP   EG L+  RA +V+   LA LA++  L 
Sbjct: 31  AAVKHNERLEFLGDAILNFIIAEALYHQFPKCNEGELSRMRATLVREPTLASLARQFELG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           D++    G         +  +A+C EA++GA+ LD  +    ++
Sbjct: 91  DYLSLGPGELKSGGFRRESILADCVEAIIGAISLDSDLATTTKI 134


>gi|169827094|ref|YP_001697252.1| ribonuclease 3 [Lysinibacillus sphaericus C3-41]
 gi|168991582|gb|ACA39122.1| Ribonuclease 3 [Lysinibacillus sphaericus C3-41]
          Length = 254

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 60/113 (53%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
            T NERLEFLGDAV+E   S +LF  +P++ EG L   RA+IV    L   A  +G   F
Sbjct: 58  FTDNERLEFLGDAVLELSVSKYLFEKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRF 117

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV 932
           +L   G +L    E    +A+ FE+ +GAL+LD  +         +++   EV
Sbjct: 118 VLLGKGEELTGGRERPALLADVFESFVGALYLDQDLQTVVSFLERIVFPKVEV 170


>gi|323491198|ref|ZP_08096384.1| ribonuclease III [Vibrio brasiliensis LMG 20546]
 gi|323314566|gb|EGA67644.1| ribonuclease III [Vibrio brasiliensis LMG 20546]
          Length = 225

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 12/136 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L D + 
Sbjct: 35  HNERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGNTLAELGREFELGDHLK 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLYKD 929
              G            +A+  EA++GA++LD  I+V             D +   V  KD
Sbjct: 95  LGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEVVRGIILSWYKTRLDAIKPGVSQKD 154

Query: 930 NEVRFKQWMYYPQHPL 945
            + R ++++   + PL
Sbjct: 155 PKTRLQEFLQGRRKPL 170


>gi|27904735|ref|NP_777861.1| ribonuclease III [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|29427422|sp|P59476.1|RNC_BUCBP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|27904132|gb|AAO26966.1| ribonuclease III [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 226

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 60/105 (57%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA +A    L 
Sbjct: 32  ANSKHNERLEFLGDSILSFVIANALYHCFPHVNEGDMSRMRATLVRGHTLAKIAYEFDLG 91

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
           D++    G         +  +AN  EAL+G++FLD  +   +++ 
Sbjct: 92  DYLQLGQGELKSGGFRRESILANTVEALIGSIFLDSNLKTIEKLI 136


>gi|78189616|ref|YP_379954.1| ribonuclease III [Chlorobium chlorochromatii CaD3]
 gi|90101617|sp|Q3AQ14.1|RNC_CHLCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|78171815|gb|ABB28911.1| RNAse III [Chlorobium chlorochromatii CaD3]
          Length = 248

 Score = 77.0 bits (188), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 67/111 (60%), Gaps = 4/111 (3%)

Query: 812 RKVATESNITH----NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHL 867
           R V   + ++H    N+RLEFLGDAV+  + S  LF  FP   EG L+  RA IV ++ L
Sbjct: 30  RSVIGNTALSHHNESNQRLEFLGDAVLGLLISHFLFQNFPASAEGDLSKTRAKIVNSKSL 89

Query: 868 AHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
           A  A+ IGL + +L    +   +  + + A+A+ FE+L+GA++LD G+D A
Sbjct: 90  ACFARSIGLGEHLLLGESAAHYNIRDSESALADAFESLIGAIYLDKGLDAA 140


>gi|314936605|ref|ZP_07843952.1| ribonuclease III [Staphylococcus hominis subsp. hominis C80]
 gi|313655224|gb|EFS18969.1| ribonuclease III [Staphylococcus hominis subsp. hominis C80]
          Length = 243

 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 60/108 (55%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   S +LF  +P++ EG L   RA IV    L   A +I L   
Sbjct: 51  LAHNERLEFLGDAVLELTVSRYLFDKYPNLPEGNLTKMRATIVCEPSLVIFANKIELNQL 110

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          +++ FEA +GAL+LD G++V  +    V++
Sbjct: 111 ILLGKGEEKTGGRTRPSLVSDAFEAFIGALYLDQGLEVVWKFAQKVIF 158


>gi|262170590|ref|ZP_06038268.1| ribonuclease III [Vibrio mimicus MB-451]
 gi|424807665|ref|ZP_18233073.1| ribonuclease III [Vibrio mimicus SX-4]
 gi|261891666|gb|EEY37652.1| ribonuclease III [Vibrio mimicus MB-451]
 gi|342325607|gb|EGU21387.1| ribonuclease III [Vibrio mimicus SX-4]
          Length = 221

 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L 
Sbjct: 27  ANGKHNERLEFLGDSILSFVIADELYHRFPKVNEGDMSRMRATLVRGNTLAELGREFDLG 86

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSV 925
           D++    G            +A+  EA++GA++LD  ++ A            +++    
Sbjct: 87  DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDLETARRIVLEWYHCRLEEIKPGA 146

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 147 SQKDPKTRLQEFLQGRRKPL 166


>gi|116873240|ref|YP_850021.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|123466444|sp|A0AJR0.1|RNC_LISW6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116742118|emb|CAK21242.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 229

 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 59/109 (54%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           N+  NERLEFLGDAV+E   S +LF+ +PD+ EG +   RAAIV    L   A+ I    
Sbjct: 38  NVKDNERLEFLGDAVLELTVSNYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAIHFSK 97

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           ++    G +          +A+ FE+ +GAL+LD GID        V++
Sbjct: 98  YIRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVTFLERVIF 146



 Score = 43.5 bits (101), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 6/64 (9%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 1018
            + Q + L+ S G  F  + LL + FT  S  Y N      +  N+RLEFLGD VL+L  S
Sbjct: 1    MNQWEELQESVGFDFQDVELLKQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 1019 DYLY 1022
            +YL+
Sbjct: 59   NYLF 62


>gi|16803845|ref|NP_465330.1| ribonuclease III [Listeria monocytogenes EGD-e]
 gi|386050782|ref|YP_005968773.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
 gi|404284301|ref|YP_006685198.1| ribonuclease III [Listeria monocytogenes SLCC2372]
 gi|405758856|ref|YP_006688132.1| ribonuclease III [Listeria monocytogenes SLCC2479]
 gi|22654060|sp|Q8Y691.1|RNC_LISMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|16411259|emb|CAC99883.1| rncS [Listeria monocytogenes EGD-e]
 gi|346424628|gb|AEO26153.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
 gi|404233803|emb|CBY55206.1| ribonuclease III [Listeria monocytogenes SLCC2372]
 gi|404236738|emb|CBY58140.1| ribonuclease III [Listeria monocytogenes SLCC2479]
          Length = 229

 Score = 77.0 bits (188), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/109 (36%), Positives = 59/109 (54%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           N+  NERLEFLGDAV+E   S +LF+ +PD+ EG +   RAAIV    L   A+ +    
Sbjct: 38  NVKDNERLEFLGDAVLELTVSDYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSK 97

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           ++    G +          +A+ FE+ +GAL+LD GID        V++
Sbjct: 98  YVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVTFLERVIF 146



 Score = 47.0 bits (110), Expect = 0.063,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 6/64 (9%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 1018
            + Q + L+ S G  F ++ LL + FT  S  Y N      +  N+RLEFLGD VL+L  S
Sbjct: 1    MNQWEELQESVGFDFKNVELLKQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 1019 DYLY 1022
            DYL+
Sbjct: 59   DYLF 62


>gi|410594287|ref|YP_006951014.1| ribonuclease 3 [Streptococcus agalactiae SA20-06]
 gi|410517926|gb|AFV72070.1| Ribonuclease 3 [Streptococcus agalactiae SA20-06]
          Length = 228

 Score = 77.0 bits (188), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/108 (36%), Positives = 62/108 (57%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDAV++ + S +LF  +P   EG L+  R+ IV+ + LA  ++  G + 
Sbjct: 39  NISHNERLEFLGDAVLQLLISQYLFTKYPQKAEGDLSKLRSMIVREKSLAGFSRLCGFDH 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           ++    G +          + + FEA +GAL LD G++V     + V+
Sbjct: 99  YIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGVEVVHAFVNKVM 146



 Score = 45.8 bits (107), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 7/65 (10%)

Query: 963  LKQLQY-LEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 1017
            +K+L+  LE   G++F +  LL   FT  S  Y N    L +  N+RLEFLGD VLQL+ 
Sbjct: 1    MKELRSKLEKDYGIVFANQELLDTAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLI 58

Query: 1018 SDYLY 1022
            S YL+
Sbjct: 59   SQYLF 63


>gi|269218651|ref|ZP_06162505.1| ribonuclease III [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211762|gb|EEZ78102.1| ribonuclease III [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 228

 Score = 77.0 bits (188), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/110 (37%), Positives = 63/110 (57%)

Query: 812 RKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLA 871
           R  A E +  HNERLEFLGD+V+ FIT+  +F  FPD  EG ++  +   V  + LA +A
Sbjct: 26  RSFAFEHDEPHNERLEFLGDSVLGFITADKVFREFPDSREGDMSRMKTFAVSEKALASIA 85

Query: 872 KRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           + + L  F+    G DL    +    +++  EAL+ A +L  G+DVA ++
Sbjct: 86  RELELGRFIRLGRGEDLSGGRDKDSILSDTVEALIAATYLQHGLDVARKI 135


>gi|255027417|ref|ZP_05299403.1| ribonuclease III [Listeria monocytogenes FSL J2-003]
          Length = 151

 Score = 77.0 bits (188), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/109 (36%), Positives = 59/109 (54%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           N+  NERLEFLGDAV+E   S +LF+ +PD+ EG +   RAAIV    L   A+ +    
Sbjct: 38  NVKDNERLEFLGDAVLELTVSDYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSK 97

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           ++    G +          +A+ FE+ +GAL+LD GID        V++
Sbjct: 98  YVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVTFLERVIF 146



 Score = 46.2 bits (108), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 6/64 (9%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 1018
            + Q + L+ S G  F  + LL + FT  S  Y N      +  N+RLEFLGD VL+L  S
Sbjct: 1    MNQWEELQESVGFDFKDVELLKQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 1019 DYLY 1022
            DYL+
Sbjct: 59   DYLF 62


>gi|15674631|ref|NP_268805.1| ribonuclease III [Streptococcus pyogenes SF370]
 gi|19745653|ref|NP_606789.1| ribonuclease III [Streptococcus pyogenes MGAS8232]
 gi|21909911|ref|NP_664179.1| ribonuclease III [Streptococcus pyogenes MGAS315]
 gi|28896390|ref|NP_802740.1| ribonuclease III [Streptococcus pyogenes SSI-1]
 gi|71910251|ref|YP_281801.1| ribonuclease III [Streptococcus pyogenes MGAS5005]
 gi|94988068|ref|YP_596169.1| ribonuclease III [Streptococcus pyogenes MGAS9429]
 gi|94991954|ref|YP_600053.1| ribonuclease III [Streptococcus pyogenes MGAS2096]
 gi|94993854|ref|YP_601952.1| ribonuclease III [Streptococcus pyogenes MGAS10750]
 gi|383479622|ref|YP_005388516.1| ribonuclease III protein Rnc [Streptococcus pyogenes MGAS15252]
 gi|383493542|ref|YP_005411218.1| ribonuclease III protein Rnc [Streptococcus pyogenes MGAS1882]
 gi|410680121|ref|YP_006932523.1| ribonuclease III [Streptococcus pyogenes A20]
 gi|417857343|ref|ZP_12502402.1| ribonuclease III [Streptococcus pyogenes HKU QMH11M0907901]
 gi|421893410|ref|ZP_16323923.1| Ribonuclease III [Streptococcus pyogenes NS88.2]
 gi|54039245|sp|P66672.1|RNC_STRP8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|54041616|sp|P66670.1|RNC_STRP1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043363|sp|Q1JCZ9.1|RNC_STRPB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043364|sp|Q1JMX4.1|RNC_STRPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043366|sp|Q1J7V3.1|RNC_STRPF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|342179219|sp|P0DF14.1|RNC_STRP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|342179220|sp|P0DF15.1|RNC_STRPQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|13621744|gb|AAK33526.1| putative ribonuclease III [Streptococcus pyogenes M1 GAS]
 gi|19747784|gb|AAL97288.1| putative ribonuclease III [Streptococcus pyogenes MGAS8232]
 gi|21904099|gb|AAM78982.1| putative ribonuclease III [Streptococcus pyogenes MGAS315]
 gi|28811641|dbj|BAC64573.1| putative ribonuclease III [Streptococcus pyogenes SSI-1]
 gi|71853033|gb|AAZ51056.1| ribonuclease III [Streptococcus pyogenes MGAS5005]
 gi|94541576|gb|ABF31625.1| ribonuclease III [Streptococcus pyogenes MGAS9429]
 gi|94545462|gb|ABF35509.1| Ribonuclease III [Streptococcus pyogenes MGAS2096]
 gi|94547362|gb|ABF37408.1| Ribonuclease III [Streptococcus pyogenes MGAS10750]
 gi|378927612|gb|AFC65818.1| ribonuclease III protein Rnc [Streptococcus pyogenes MGAS15252]
 gi|378929270|gb|AFC67687.1| ribonuclease III protein Rnc [Streptococcus pyogenes MGAS1882]
 gi|379980842|emb|CCG27645.1| Ribonuclease III [Streptococcus pyogenes NS88.2]
 gi|387934298|gb|EIK42411.1| ribonuclease III [Streptococcus pyogenes HKU QMH11M0907901]
 gi|395453490|dbj|BAM29829.1| ribonuclease III [Streptococcus pyogenes M1 476]
 gi|409692710|gb|AFV37570.1| ribonuclease III [Streptococcus pyogenes A20]
          Length = 230

 Score = 77.0 bits (188), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 4/134 (2%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           N++HNERLEFLGDAV++ I S +LF  +P   EG ++  R+ IV+ + LA  ++    + 
Sbjct: 39  NVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDA 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRF 934
           ++    G +          + + FEA +GAL LD GID   +    V+     K N  R 
Sbjct: 99  YIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERV 158

Query: 935 KQWMYYPQHPLQEQ 948
           K +    Q  LQ +
Sbjct: 159 KDYKTCLQEFLQTK 172



 Score = 48.5 bits (114), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 7/65 (10%)

Query: 963  LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 1017
            +KQL+ L  +S  + FN + LL   FT  S  Y N    L +  N+RLEFLGD VLQLI 
Sbjct: 1    MKQLEELLSTSFDIQFNDLTLLETAFTHTS--YANEHRLLNVSHNERLEFLGDAVLQLII 58

Query: 1018 SDYLY 1022
            S+YL+
Sbjct: 59   SEYLF 63


>gi|421074186|ref|ZP_15535226.1| Ribonuclease 3 [Pelosinus fermentans JBW45]
 gi|392527692|gb|EIW50778.1| Ribonuclease 3 [Pelosinus fermentans JBW45]
          Length = 242

 Score = 77.0 bits (188), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 56/95 (58%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I+HNERLEFLGDAV++ I S +LF  F  + EG L   RA IV    LA  A  +G+ ++
Sbjct: 48  ISHNERLEFLGDAVLDLIVSEYLFRQFSHLPEGELTKARAVIVCEPTLARCAAELGIGEY 107

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGG 914
           +    G       E    +A+ FEA++GA++LD G
Sbjct: 108 LFLGKGETSSGGRERVSILADSFEAVIGAIYLDSG 142



 Score = 43.1 bits (100), Expect = 0.86,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITS 1018
            +  L  L  + GV F  I LL +  T  S  Y N      +  N+RLEFLGD VL LI S
Sbjct: 10   MDALSRLSNTLGVQFTDINLLHQALTHTS--YANECKKTLISHNERLEFLGDAVLDLIVS 67

Query: 1019 DYLY 1022
            +YL+
Sbjct: 68   EYLF 71


>gi|228474955|ref|ZP_04059683.1| ribonuclease III [Staphylococcus hominis SK119]
 gi|418620506|ref|ZP_13183310.1| ribonuclease III [Staphylococcus hominis VCU122]
 gi|228270940|gb|EEK12328.1| ribonuclease III [Staphylococcus hominis SK119]
 gi|374822636|gb|EHR86656.1| ribonuclease III [Staphylococcus hominis VCU122]
          Length = 243

 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 60/108 (55%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   S +LF  +P++ EG L   RA IV    L   A +I L   
Sbjct: 51  LAHNERLEFLGDAVLELTVSRYLFDKYPNLPEGNLTKMRATIVCEPSLVIFANKIELNQL 110

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          +++ FEA +GAL+LD G++V  +    V++
Sbjct: 111 ILLGKGEEKTGGRTRPSLVSDAFEAFIGALYLDQGLEVVWKFAQKVIF 158


>gi|421262773|ref|ZP_15713860.1| ribonuclease III [Pasteurella multocida subsp. multocida str.
           P52VAC]
 gi|401690458|gb|EJS85729.1| ribonuclease III [Pasteurella multocida subsp. multocida str.
           P52VAC]
          Length = 225

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 60/104 (57%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           + + HNERLEFLGDA++ FI +  L+H FP   EG L+  RA +V+   LA LA++  L 
Sbjct: 31  AAVKHNERLEFLGDAILNFIIAEALYHQFPKCNEGELSRMRATLVREPTLATLARQFELG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           D++    G         +  +A+C EA++GA+ LD  +    ++
Sbjct: 91  DYLSLGPGELKSGGFRRESILADCVEAIIGAISLDSDLATTTKI 134


>gi|244539261|dbj|BAH83304.1| ribonuclease III [Candidatus Ishikawaella capsulata Mpkobe]
          Length = 226

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 61/105 (58%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +NI HNERLEFLGD+++ ++ +  L+H FP + EG ++  RA +V+   LA +AK   L 
Sbjct: 32  ANIHHNERLEFLGDSILNYVIANALYHRFPCVNEGDMSRMRATLVRGHTLAKIAKEFDLG 91

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
           +++    G         +  +A+  EAL+G +FLD  I + + + 
Sbjct: 92  EYLYLGPGELKSGGCSRESILADTIEALIGGIFLDSSIQIVENLI 136


>gi|239636288|ref|ZP_04677290.1| ribonuclease III [Staphylococcus warneri L37603]
 gi|239597643|gb|EEQ80138.1| ribonuclease III [Staphylococcus warneri L37603]
          Length = 243

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 55/99 (55%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   S +LF   PD+ EG L   RA IV    L   A +I L + 
Sbjct: 52  LDHNERLEFLGDAVLELTVSRYLFDKHPDLPEGNLTKMRATIVCEPSLVIFANKIKLNEL 111

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
           +L   G +          +++ FEA +GAL+LD G+D  
Sbjct: 112 ILLGKGEEKTGGRTRPSLISDAFEAFVGALYLDQGLDTV 150


>gi|189043365|sp|Q1JI19.1|RNC_STRPD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|94543456|gb|ABF33504.1| Ribonuclease III [Streptococcus pyogenes MGAS10270]
          Length = 230

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 4/134 (2%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           N++HNERLEFLGDAV++ I S +LF  +P   EG ++  R+ IV+ + LA  ++    + 
Sbjct: 39  NVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDA 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRF 934
           ++    G +          + + FEA +GAL LD GID   +    V+     K N  R 
Sbjct: 99  YIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERV 158

Query: 935 KQWMYYPQHPLQEQ 948
           K +    Q  LQ +
Sbjct: 159 KDYKTCLQEFLQAK 172



 Score = 48.5 bits (114), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 7/65 (10%)

Query: 963  LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 1017
            +KQL+  L  S  + FN + LL   FT  S  Y N    L +  N+RLEFLGD VLQLI 
Sbjct: 1    MKQLEELLSTSFDIQFNDLTLLETAFTHTS--YANEHRLLNVSHNERLEFLGDAVLQLII 58

Query: 1018 SDYLY 1022
            S+YL+
Sbjct: 59   SEYLF 63


>gi|50913818|ref|YP_059790.1| ribonuclease III [Streptococcus pyogenes MGAS10394]
 gi|56808931|ref|ZP_00366639.1| COG0571: dsRNA-specific ribonuclease [Streptococcus pyogenes M49
           591]
 gi|139474237|ref|YP_001128953.1| ribonuclease III [Streptococcus pyogenes str. Manfredo]
 gi|209559002|ref|YP_002285474.1| ribonuclease III [Streptococcus pyogenes NZ131]
 gi|255591218|ref|XP_002535468.1| ribonuclease III, putative [Ricinus communis]
 gi|306827819|ref|ZP_07461089.1| ribonuclease III [Streptococcus pyogenes ATCC 10782]
 gi|386362306|ref|YP_006071637.1| ribonuclease III [Streptococcus pyogenes Alab49]
 gi|73917584|sp|Q5XDA6.1|RNC_STRP6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043367|sp|A2RFW8.1|RNC_STRPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226741379|sp|B5XKB7.1|RNC_STRPZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|50902892|gb|AAT86607.1| Ribonuclease III [Streptococcus pyogenes MGAS10394]
 gi|134272484|emb|CAM30747.1| ribonuclease III [Streptococcus pyogenes str. Manfredo]
 gi|209540203|gb|ACI60779.1| Ribonuclease III [Streptococcus pyogenes NZ131]
 gi|223523016|gb|EEF26915.1| ribonuclease III, putative [Ricinus communis]
 gi|304429989|gb|EFM33028.1| ribonuclease III [Streptococcus pyogenes ATCC 10782]
 gi|350276715|gb|AEQ24083.1| ribonuclease III [Streptococcus pyogenes Alab49]
          Length = 230

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 4/134 (2%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           N++HNERLEFLGDAV++ I S +LF  +P   EG ++  R+ IV+ + LA  ++    + 
Sbjct: 39  NVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDA 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRF 934
           ++    G +          + + FEA +GAL LD GID   +    V+     K N  R 
Sbjct: 99  YIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERV 158

Query: 935 KQWMYYPQHPLQEQ 948
           K +    Q  LQ +
Sbjct: 159 KDYKTCLQEFLQTK 172



 Score = 48.5 bits (114), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 7/65 (10%)

Query: 963  LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 1017
            +KQL+  L  S  + FN + LL   FT  S  Y N    L +  N+RLEFLGD VLQLI 
Sbjct: 1    MKQLEELLSTSFDIQFNDLTLLETAFTHTS--YANEHRLLNVSHNERLEFLGDAVLQLII 58

Query: 1018 SDYLY 1022
            S+YL+
Sbjct: 59   SEYLF 63


>gi|221135073|ref|ZP_03561376.1| ribonuclease III [Glaciecola sp. HTCC2999]
          Length = 241

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 56/95 (58%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDAV+  I   HLF  FP+  EG L   R+AIV+   LA +A   GL +F+ 
Sbjct: 51  HNERLEFLGDAVLGMIVGEHLFKAFPNSPEGKLTRMRSAIVKGDTLAEIALEKGLGEFIQ 110

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
              G       +    +A+  E+++GA++LD G++
Sbjct: 111 LGAGELKSGGKQRYSILADVVESIIGAIYLDAGMN 145


>gi|338811275|ref|ZP_08623500.1| ribonuclease III [Acetonema longum DSM 6540]
 gi|337276744|gb|EGO65156.1| ribonuclease III [Acetonema longum DSM 6540]
          Length = 239

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/98 (40%), Positives = 59/98 (60%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           +I  NERLEFLGDAV++ + S +L+  FP + EG L   RA IV  Q LA  A ++G+ +
Sbjct: 44  DIVDNERLEFLGDAVLDLVISDYLYRYFPRLPEGELTKARATIVCEQTLAQHAVKLGIGE 103

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            +L   G       E    +A+ FEA++GA++LD G +
Sbjct: 104 HLLLGKGELSSGGRERVSILADAFEAVIGAIYLDAGFN 141



 Score = 43.9 bits (102), Expect = 0.43,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 963  LKQLQYLEYSSGVIFNHIRLL--ARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDY 1020
            ++ L  L    G+ F+ + L   A + T+ +  Y  + +  N+RLEFLGD VL L+ SDY
Sbjct: 7    IRTLSALSDKIGIRFSDLILFHQALIHTSYANEYKGVDIVDNERLEFLGDAVLDLVISDY 66

Query: 1021 LY 1022
            LY
Sbjct: 67   LY 68


>gi|408374675|ref|ZP_11172359.1| ribonuclease III [Alcanivorax hongdengensis A-11-3]
 gi|407765483|gb|EKF73936.1| ribonuclease III [Alcanivorax hongdengensis A-11-3]
          Length = 220

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 17/163 (10%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDA +  I S  LF+ FP+  EG L   RA++V+ Q LA +A+ +GL ++++
Sbjct: 28  NNERLEFLGDAQLGQIISTTLFNQFPEATEGQLTRMRASLVRGQTLALVARDLGLGEYLV 87

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGG------------IDVADQVFSSVLYKD 929
              G         +  +A+  EA++GA+ LDGG             D    +      KD
Sbjct: 88  LGGGELKSGGFRRESILADALEAVIGAMLLDGGEAPCREAVLRLFRDRLAVITPQTAQKD 147

Query: 930 NEVRFKQWMY-----YPQHPLQEQEPDGDRQWVEQSPLLKQLQ 967
            + R ++W+       P++ ++  +    +Q  E S  ++Q+Q
Sbjct: 148 AKTRLQEWLQARKFELPEYQVESVQGQAPKQTFEVSCAMQQVQ 190


>gi|336123316|ref|YP_004565364.1| ribonuclease III [Vibrio anguillarum 775]
 gi|365540223|ref|ZP_09365398.1| ribonuclease III [Vibrio ordalii ATCC 33509]
 gi|335341039|gb|AEH32322.1| Ribonuclease III [Vibrio anguillarum 775]
          Length = 225

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 60/107 (56%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP I EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANGKHNERLEFLGDSILSFVIADELYHRFPKINEGDMSRMRATLVRGHTLAELGREFCLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS 924
           D++    G            +A+  EA++GA++LD   +V  ++  S
Sbjct: 91  DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDTEVVRRIILS 137


>gi|251772774|gb|EES53336.1| Ribonuclease III [Leptospirillum ferrodiazotrophum]
          Length = 366

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 59/103 (57%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I + ERLEFLGD VV  I S +L +++P   EG +    + IV  Q LA +A+R+ L  +
Sbjct: 49  IPNYERLEFLGDRVVGLIVSEYLLNMWPQATEGEVGQVFSTIVSTQTLASIARRMDLGSY 108

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
           M+   GS+   E E    +A+ FEAL  A++ + G++   Q+ 
Sbjct: 109 MILGKGSNSSGERENASLLADTFEALTAAIYCEYGLETTRQIL 151


>gi|155371010|ref|YP_001426544.1| hypothetical protein ATCV1_Z063L [Acanthocystis turfacea Chlorella
           virus 1]
 gi|155124330|gb|ABT16197.1| hypothetical protein ATCV1_Z063L [Acanthocystis turfacea Chlorella
           virus 1]
          Length = 268

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 2/113 (1%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           E N    ERLEFLGD+V+ F+ + +L+ VFP   EG L   R   V  + L+ LA ++GL
Sbjct: 71  EENGETFERLEFLGDSVLGFLIARYLYDVFPGKNEGVLTRLRVKFVSGKLLSKLAHQLGL 130

Query: 877 EDFMLYAH-GSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 928
            +F++ +  G   C     K  + + FEAL+GA++LD GI+ A Q   SVL K
Sbjct: 131 HEFIIMSQKGLYRCWHTNPK-TLEDAFEALIGAIYLDLGINAARQFLMSVLTK 182


>gi|387127249|ref|YP_006295854.1| ribonuclease III [Methylophaga sp. JAM1]
 gi|386274311|gb|AFI84209.1| Ribonuclease III [Methylophaga sp. JAM1]
          Length = 219

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 12/136 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDA++ F+ +  LF+ FP  +EG ++  RA++V+ + LA +A+ + L + ++
Sbjct: 36  NNERLEFLGDAILSFVIAEELFNRFPQAKEGKMSRLRASLVKGETLAEIARELKLGEVLI 95

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLYKD 929
              G         +  +A+  EA++GALFLD GID              D +  +   KD
Sbjct: 96  LGQGELKSGGFRRESILADALEAIIGALFLDCGIDAVKPLILRLYDERLDSIDVTETVKD 155

Query: 930 NEVRFKQWMYYPQHPL 945
            + R ++ +   + PL
Sbjct: 156 PKTRLQELLQSRKLPL 171


>gi|47097388|ref|ZP_00234939.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
 gi|217964043|ref|YP_002349721.1| ribonuclease III [Listeria monocytogenes HCC23]
 gi|254829200|ref|ZP_05233887.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
 gi|254912363|ref|ZP_05262375.1| ribonuclease III [Listeria monocytogenes J2818]
 gi|254936690|ref|ZP_05268387.1| ribonuclease III [Listeria monocytogenes F6900]
 gi|290893065|ref|ZP_06556054.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
 gi|386008577|ref|YP_005926855.1| ribonuclease III [Listeria monocytogenes L99]
 gi|386027184|ref|YP_005947960.1| putative ribonuclease III [Listeria monocytogenes M7]
 gi|386047457|ref|YP_005965789.1| ribonuclease III [Listeria monocytogenes J0161]
 gi|404408249|ref|YP_006690964.1| ribonuclease III [Listeria monocytogenes SLCC2376]
 gi|404413884|ref|YP_006699471.1| ribonuclease III [Listeria monocytogenes SLCC7179]
 gi|422410046|ref|ZP_16487007.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
 gi|422809886|ref|ZP_16858297.1| Ribonuclease III [Listeria monocytogenes FSL J1-208]
 gi|254807893|sp|B8DDU8.1|RNC_LISMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|47014236|gb|EAL05218.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
 gi|217333313|gb|ACK39107.1| ribonuclease III [Listeria monocytogenes HCC23]
 gi|258601611|gb|EEW14936.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
 gi|258609286|gb|EEW21894.1| ribonuclease III [Listeria monocytogenes F6900]
 gi|290557425|gb|EFD90950.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
 gi|293590344|gb|EFF98678.1| ribonuclease III [Listeria monocytogenes J2818]
 gi|307571387|emb|CAR84566.1| ribonuclease III [Listeria monocytogenes L99]
 gi|313608181|gb|EFR84216.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
 gi|336023765|gb|AEH92902.1| putative ribonuclease III [Listeria monocytogenes M7]
 gi|345534448|gb|AEO03889.1| ribonuclease III [Listeria monocytogenes J0161]
 gi|378751550|gb|EHY62138.1| Ribonuclease III [Listeria monocytogenes FSL J1-208]
 gi|404239583|emb|CBY60984.1| ribonuclease III [Listeria monocytogenes SLCC7179]
 gi|404242398|emb|CBY63798.1| ribonuclease III [Listeria monocytogenes SLCC2376]
          Length = 229

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/109 (36%), Positives = 59/109 (54%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           N+  NERLEFLGDAV+E   S +LF+ +PD+ EG +   RAAIV    L   A+ +    
Sbjct: 38  NVKDNERLEFLGDAVLELTVSDYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSK 97

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           ++    G +          +A+ FE+ +GAL+LD GID        V++
Sbjct: 98  YVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVTFLERVIF 146



 Score = 46.2 bits (108), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 6/64 (9%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 1018
            + Q + L+ S G  F  + LL + FT  S  Y N      +  N+RLEFLGD VL+L  S
Sbjct: 1    MNQWEELQESVGFDFKDVELLKQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 1019 DYLY 1022
            DYL+
Sbjct: 59   DYLF 62


>gi|121533802|ref|ZP_01665629.1| Ribonuclease III [Thermosinus carboxydivorans Nor1]
 gi|121307793|gb|EAX48708.1| Ribonuclease III [Thermosinus carboxydivorans Nor1]
          Length = 243

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 46/113 (40%), Positives = 68/113 (60%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           +  + HNERLEFLGDAV+E I S +L+  FP++ EG L   RA +V    LA  A R+GL
Sbjct: 44  KGGVEHNERLEFLGDAVLELIISEYLYRNFPELPEGELTKARARLVCEPSLAQCASRLGL 103

Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 929
             ++L   G  +    E    +A+ FEA++GA++LDGG+  A     + L++D
Sbjct: 104 GKYLLLGKGEAVSGGRERTSILADAFEAVIGAIYLDGGVSAATNFVLNHLHED 156



 Score = 45.1 bits (105), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 966  LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS---NQRLEFLGDTVLQLITSDYLY 1022
            L+ L  S G+ FN + LL +     S  Y N   G    N+RLEFLGD VL+LI S+YLY
Sbjct: 13   LRDLAASLGISFNDLGLLHQALVHTS--YANEVKGGVEHNERLEFLGDAVLELIISEYLY 70


>gi|332523874|ref|ZP_08400126.1| ribonuclease III [Streptococcus porcinus str. Jelinkova 176]
 gi|332315138|gb|EGJ28123.1| ribonuclease III [Streptococcus porcinus str. Jelinkova 176]
          Length = 230

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/141 (35%), Positives = 74/141 (52%), Gaps = 7/141 (4%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDAV++ I S +LF  +P   EG L+  R+ IV+ + LA  ++    + 
Sbjct: 39  NISHNERLEFLGDAVLQLIISEYLFKKYPHKPEGDLSKLRSMIVREESLAGFSRFCSFDT 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID----VADQVFSSVLYKDNEVRF 934
           ++    G +          + + FEA +GAL LD GI+      +QV  S + K N  + 
Sbjct: 99  YIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGIEEVRLFLNQVMISQVEKGNFEKV 158

Query: 935 KQWMYYPQHPLQEQEPDGDRQ 955
           K +    Q  LQ +   GD Q
Sbjct: 159 KDYKTGLQEVLQAK---GDVQ 176



 Score = 46.2 bits (108), Expect = 0.087,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 7/65 (10%)

Query: 963  LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 1017
            +K+L+  L+ +  ++FN   LL   FT  S  Y N    L +  N+RLEFLGD VLQLI 
Sbjct: 1    MKKLKALLKETFNIVFNDQDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLII 58

Query: 1018 SDYLY 1022
            S+YL+
Sbjct: 59   SEYLF 63


>gi|254415469|ref|ZP_05029229.1| ribonuclease III [Coleofasciculus chthonoplastes PCC 7420]
 gi|196177650|gb|EDX72654.1| ribonuclease III [Coleofasciculus chthonoplastes PCC 7420]
          Length = 239

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 18/134 (13%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDAV+ F+    L+  +PD+ E  L   RA +V  + LA  A ++G+ D M 
Sbjct: 44  HNERLEFLGDAVLGFVVGELLYKRYPDVSEAHLTRLRANLVDEKQLAKFASQLGIGDLMR 103

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVL----------- 926
              G+D     +    +++  EA M A +++ GID   Q    +FS V            
Sbjct: 104 LGKGADKEGGRQNPALLSDTLEAYMAAYYIESGIDAVRQFIYPLFSRVADSIAVQQSDTE 163

Query: 927 ---YKDNEVRFKQW 937
                D + RF+QW
Sbjct: 164 PKNLVDPKGRFQQW 177


>gi|444347815|ref|ZP_21155622.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype b
           str. S23A]
 gi|443548107|gb|ELT57445.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype b
           str. S23A]
          Length = 205

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 16/146 (10%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDA++       LFH FP   EG L+  RA +V+   LA LA+   L D++L
Sbjct: 15  HNERLEFLGDAILNLTIGEALFHQFPKCNEGELSRMRATLVREPTLALLARDFKLGDYIL 74

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYP 941
              G         +  +A+C EA++GA+ LD  +  A Q+              QW    
Sbjct: 75  LGQGELKSGGFRRESILADCVEAIIGAISLDSNLTNATQIVC------------QWY--- 119

Query: 942 QHPLQEQEPDGDRQWVEQSPLLKQLQ 967
           Q+ L+E +P GD Q   ++ L + LQ
Sbjct: 120 QNLLKEIKP-GDNQKDAKTRLQEYLQ 144


>gi|407792178|ref|ZP_11139248.1| ribonuclease III [Gallaecimonas xiamenensis 3-C-1]
 gi|407197865|gb|EKE67913.1| ribonuclease III [Gallaecimonas xiamenensis 3-C-1]
          Length = 224

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 23/168 (13%)

Query: 801 NTLINIMSKLGRKVATESNI-----------THNERLEFLGDAVVEFITSIHLFHVFPDI 849
           N+L  +  +LG +   E  +            HNERLE+LGD+++ F+ +  L+H FP  
Sbjct: 3   NSLDTLYRRLGYRFNDEKRVRQALTHRSAGSQHNERLEYLGDSILSFVIADALYHRFPKA 62

Query: 850 EEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGAL 909
            EG ++  RA +V+ + LA L     L DF+    G         +  +A+  EAL+GA+
Sbjct: 63  NEGDMSRMRATLVKGKTLAELGSEFQLGDFLRLGPGELKSGGFRRESILADGVEALIGAI 122

Query: 910 FLDGGIDVA------------DQVFSSVLYKDNEVRFKQWMYYPQHPL 945
           +LD  +D              D +   V  KD + R ++++   + PL
Sbjct: 123 YLDSDLDSIRQLILNWYEQRLDDIQPGVAQKDPKTRLQEYLQGKRLPL 170


>gi|418048326|ref|ZP_12686414.1| Ribonuclease 3 [Mycobacterium rhodesiae JS60]
 gi|353193996|gb|EHB59500.1| Ribonuclease 3 [Mycobacterium rhodesiae JS60]
          Length = 234

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 59/102 (57%), Gaps = 3/102 (2%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI---GLEDF 879
           NERLEFLGDAV+    +  LFH  PD  EG LA  RA+IV  Q LA + +R+   GL  +
Sbjct: 40  NERLEFLGDAVLGLTVTDELFHRHPDRSEGDLAKLRASIVNTQALADVGRRLTDDGLGAY 99

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           +L   G       +    +A+  E+L+GA++L  GID A +V
Sbjct: 100 LLLGRGEVNTGGADKSSILADGMESLLGAVYLQHGIDTARKV 141


>gi|448936426|gb|AGE59973.1| RNase III [Acanthocystis turfacea Chlorella virus WI0606]
          Length = 268

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 2/113 (1%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           E N    ERLEFLGD+V+ F+ + +L+ VFP   EG L   R   V  + L+ LA ++GL
Sbjct: 71  EENGETFERLEFLGDSVLGFLIARYLYDVFPGKNEGVLTRLRVKFVSGKLLSKLAHQLGL 130

Query: 877 EDFMLYAH-GSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 928
            +F++ +  G   C     K  + + FEAL+GA++LD GI+ A Q   SVL K
Sbjct: 131 HEFIIMSQKGLYRCWHTNPK-TLEDAFEALIGAIYLDLGINAARQFLMSVLTK 182


>gi|399020225|ref|ZP_10722364.1| ribonuclease III [Herbaspirillum sp. CF444]
 gi|398095877|gb|EJL86209.1| ribonuclease III [Herbaspirillum sp. CF444]
          Length = 351

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 12/136 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++  + +  LF  +  I+EG L+  RA +V+ Q L  +A+R+ L  F+ 
Sbjct: 33  HNERLEFLGDSILNCVVASLLFDRYSKIDEGDLSRLRANLVKQQSLYEIAQRLDLSQFLR 92

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLYKD 929
              G            +A+  EAL GA+FLD G + A            D V    L KD
Sbjct: 93  LGEGELKSGGFRRPSILADTLEALFGAIFLDAGFNAARDVIRALYIPILDTVDPKTLGKD 152

Query: 930 NEVRFKQWMYYPQHPL 945
            +   ++++   + PL
Sbjct: 153 AKTLLQEYLQGKKIPL 168


>gi|406589966|ref|ZP_11064377.1| ribonuclease III, partial [Enterococcus sp. GMD1E]
 gi|404470038|gb|EKA14718.1| ribonuclease III, partial [Enterococcus sp. GMD1E]
          Length = 220

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 60/108 (55%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           ++ NERLEFLGDAV+E + S +LF ++P + EG L   RAAIV+   L+  AK    + +
Sbjct: 33  LSDNERLEFLGDAVLELMVSQYLFRLYPHLPEGKLTKTRAAIVREDSLSKFAKECHFDQY 92

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          + + FEA +GAL+LD G D        V++
Sbjct: 93  VLLGKGEENSGGRTRPALLCDLFEAFLGALYLDQGFDTTHAFIEKVIF 140



 Score = 46.6 bits (109), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query: 975  VIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            ++F+ + LL + FT  S    + NL L  N+RLEFLGD VL+L+ S YL+
Sbjct: 7    IVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLF 56


>gi|425064814|ref|ZP_18467934.1| Ribonuclease III [Pasteurella multocida subsp. gallicida P1059]
 gi|404384529|gb|EJZ80962.1| Ribonuclease III [Pasteurella multocida subsp. gallicida P1059]
          Length = 225

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 60/104 (57%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           + + HNERLEFLGDA++ FI +  L+H FP   EG L+  RA +V+   LA LA++  L 
Sbjct: 31  AAVKHNERLEFLGDAILNFIIAEALYHQFPKCNEGELSRMRATLVREPTLASLARQFELG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           D++    G         +  +A+C EA++GA+ LD  +    ++
Sbjct: 91  DYLSLGPGELKSGGFRRESILADCVEAIIGAISLDSDLATTTKI 134


>gi|284802251|ref|YP_003414116.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
 gi|284995393|ref|YP_003417161.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
 gi|386044113|ref|YP_005962918.1| ribonuclease III [Listeria monocytogenes 10403S]
 gi|386054060|ref|YP_005971618.1| ribonuclease III [Listeria monocytogenes Finland 1998]
 gi|404411106|ref|YP_006696694.1| ribonuclease III [Listeria monocytogenes SLCC5850]
 gi|284057813|gb|ADB68754.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
 gi|284060860|gb|ADB71799.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
 gi|345537347|gb|AEO06787.1| ribonuclease III [Listeria monocytogenes 10403S]
 gi|346646711|gb|AEO39336.1| ribonuclease III [Listeria monocytogenes Finland 1998]
 gi|404230932|emb|CBY52336.1| ribonuclease III [Listeria monocytogenes SLCC5850]
 gi|441471562|emb|CCQ21317.1| Ribonuclease 3 [Listeria monocytogenes]
 gi|441474693|emb|CCQ24447.1| Ribonuclease 3 [Listeria monocytogenes N53-1]
          Length = 229

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/109 (36%), Positives = 59/109 (54%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           N+  NERLEFLGDAV+E   S +LF+ +PD+ EG +   RAAIV    L   A+ +    
Sbjct: 38  NVKDNERLEFLGDAVLELTVSDYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSK 97

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           ++    G +          +A+ FE+ +GAL+LD GID        V++
Sbjct: 98  YVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVTFLERVIF 146



 Score = 46.6 bits (109), Expect = 0.069,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 6/64 (9%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 1018
            + Q + L+ S G  F ++ LL + FT  S  Y N      +  N+RLEFLGD VL+L  S
Sbjct: 1    MNQWEELQESVGFDFKNVELLKQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 1019 DYLY 1022
            DYL+
Sbjct: 59   DYLF 62


>gi|375337647|ref|ZP_09778991.1| ribonuclease III [Succinivibrionaceae bacterium WG-1]
          Length = 237

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 79/141 (56%), Gaps = 8/141 (5%)

Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
           +HNERLEFLGD+++  + + HL+H FP++ EG L   R+ +V+   LA +A+ + L D++
Sbjct: 38  SHNERLEFLGDSILGMLMAEHLYHQFPEVPEGDLTRMRSTLVREPTLAEIARDLKLSDYL 97

Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYY 940
           L   G            +A+  EA++G+++LD   ++  ++  +VL    + R K+    
Sbjct: 98  LMGPGELKSGGYRRDSILADAVEAILGSIYLDSNNNI--EIVRTVLMSLFDTRLKEI--- 152

Query: 941 PQHP-LQEQEPDGDRQWVEQS 960
             HP  ++++P  + Q   Q+
Sbjct: 153 --HPGFEQKDPKTNLQEYLQA 171



 Score = 40.0 bits (92), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 5/54 (9%)

Query: 969  LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            LE + G  +N ++ L +  T RS G ++     N+RLEFLGD++L ++ +++LY
Sbjct: 12   LEKALGYEYNDLQHLQKALTHRSYGASH-----NERLEFLGDSILGMLMAEHLY 60


>gi|331002416|ref|ZP_08325934.1| ribonuclease III [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330410232|gb|EGG89666.1| ribonuclease III [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 232

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 53/235 (22%)

Query: 731 HRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRI 790
           + +L  L++ + Y+++N+ LL+ ALTH SY                              
Sbjct: 2   NNNLKELQELLGYEYKNKELLKQALTHSSY------------------------------ 31

Query: 791 HFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIE 850
              N  + G N                     NERLEFLGDAV+E ++S   + V+P+  
Sbjct: 32  --ANEHQLGKNG-------------------SNERLEFLGDAVLELVSSEFFYGVYPEKP 70

Query: 851 EGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALF 910
           EG L   RA+ V    L   AK I L +F+    G +          +++ FEA++G+++
Sbjct: 71  EGELTKIRASFVCEPALVDCAKNIKLSEFLKLGKGEEHTGGRMRPSIISDTFEAIIGSIY 130

Query: 911 LDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQ 965
           LDGG   A +V    +   NE   K + Y  +  LQE     D + VE + L ++
Sbjct: 131 LDGGFASAKEVILKFIL--NEYENKVFFYDSKTILQEVIQSQDSKPVEYTLLSEE 183


>gi|307610570|emb|CBX00158.1| hypothetical protein LPW_19031 [Legionella pneumophila 130b]
          Length = 206

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 17/168 (10%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           ER EFLGD+++ F+ +  LF+ FP   EG L+  R+ +V+ + LA +A+ IGL D++   
Sbjct: 19  ERFEFLGDSILSFVIANELFNRFPLHSEGQLSRLRSFLVKGEMLAEIAREIGLGDYLFLG 78

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSVL--------YKDNE 931
            G            +A+  EA++ A++LDGG+  A Q+    +SS L         KD +
Sbjct: 79  QGELRSGGFRRTSILADALEAILAAIYLDGGMTAAKQIILMLYSSRLDDPDLNHCLKDAK 138

Query: 932 VRFKQWMY-----YPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSG 974
            + ++++       P++ L + E D   Q    +  ++ +  + Y +G
Sbjct: 139 TQLQEFLQASKFALPEYVLTKVEGDEHAQIFHVTCTIEGVSQVAYGTG 186


>gi|186475606|ref|YP_001857076.1| ribonuclease III [Burkholderia phymatum STM815]
 gi|184192065|gb|ACC70030.1| Ribonuclease III [Burkholderia phymatum STM815]
          Length = 441

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 12/139 (8%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + +
Sbjct: 38  SATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISE 97

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVL 926
            +    G            +A+  EA++GA+FLDGG D A            D +    L
Sbjct: 98  GLRLGEGELRSGGFRRPSILADTLEAILGAIFLDGGFDAAQTVIKRLYVPILDHIDPRTL 157

Query: 927 YKDNEVRFKQWMYYPQHPL 945
            KD +   ++++   + PL
Sbjct: 158 GKDAKTLLQEYLQGHKIPL 176


>gi|46908036|ref|YP_014425.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
 gi|47093844|ref|ZP_00231588.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
 gi|226224408|ref|YP_002758515.1| ribonuclease III [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|254826153|ref|ZP_05231154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
 gi|254852713|ref|ZP_05242061.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
 gi|254933277|ref|ZP_05266636.1| ribonuclease III [Listeria monocytogenes HPB2262]
 gi|300763882|ref|ZP_07073879.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
 gi|386732545|ref|YP_006206041.1| ribonuclease III [Listeria monocytogenes 07PF0776]
 gi|404281417|ref|YP_006682315.1| ribonuclease III [Listeria monocytogenes SLCC2755]
 gi|404287234|ref|YP_006693820.1| ribonuclease III [Listeria monocytogenes serotype 7 str. SLCC2482]
 gi|405750156|ref|YP_006673622.1| ribonuclease III [Listeria monocytogenes ATCC 19117]
 gi|405753031|ref|YP_006676496.1| ribonuclease III [Listeria monocytogenes SLCC2378]
 gi|405755965|ref|YP_006679429.1| ribonuclease III [Listeria monocytogenes SLCC2540]
 gi|406704588|ref|YP_006754942.1| ribonuclease III [Listeria monocytogenes L312]
 gi|417317908|ref|ZP_12104509.1| ribonuclease III [Listeria monocytogenes J1-220]
 gi|424714681|ref|YP_007015396.1| Ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
 gi|424823566|ref|ZP_18248579.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
 gi|73917580|sp|Q71YL2.1|RNC_LISMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|259491903|sp|C1KWA4.1|RNC_LISMC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|46881306|gb|AAT04602.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
 gi|47017785|gb|EAL08574.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
 gi|225876870|emb|CAS05579.1| Putative ribonuclease III [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258606034|gb|EEW18642.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
 gi|293584837|gb|EFF96869.1| ribonuclease III [Listeria monocytogenes HPB2262]
 gi|293595393|gb|EFG03154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
 gi|300515618|gb|EFK42668.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
 gi|328473534|gb|EGF44371.1| ribonuclease III [Listeria monocytogenes J1-220]
 gi|332312246|gb|EGJ25341.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
 gi|384391303|gb|AFH80373.1| ribonuclease III [Listeria monocytogenes 07PF0776]
 gi|404219356|emb|CBY70720.1| ribonuclease III [Listeria monocytogenes ATCC 19117]
 gi|404222231|emb|CBY73594.1| ribonuclease III [Listeria monocytogenes SLCC2378]
 gi|404225165|emb|CBY76527.1| ribonuclease III [Listeria monocytogenes SLCC2540]
 gi|404228052|emb|CBY49457.1| ribonuclease III [Listeria monocytogenes SLCC2755]
 gi|404246163|emb|CBY04388.1| ribonuclease III [Listeria monocytogenes serotype 7 str. SLCC2482]
 gi|406361618|emb|CBY67891.1| ribonuclease III [Listeria monocytogenes L312]
 gi|424013865|emb|CCO64405.1| Ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
          Length = 229

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/109 (36%), Positives = 59/109 (54%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           N+  NERLEFLGDAV+E   S +LF+ +PD+ EG +   RAAIV    L   A+ +    
Sbjct: 38  NVKDNERLEFLGDAVLELTVSNYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSK 97

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           ++    G +          +A+ FE+ +GAL+LD GID        V++
Sbjct: 98  YVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVTFLERVIF 146



 Score = 44.3 bits (103), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 6/64 (9%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 1018
            + Q + L+ S G  F  + LL + FT  S  Y N      +  N+RLEFLGD VL+L  S
Sbjct: 1    MNQWEELQESVGFDFKDVELLKQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 1019 DYLY 1022
            +YL+
Sbjct: 59   NYLF 62


>gi|257866576|ref|ZP_05646229.1| ribonuclease III [Enterococcus casseliflavus EC30]
 gi|257872908|ref|ZP_05652561.1| ribonuclease III [Enterococcus casseliflavus EC10]
 gi|257876180|ref|ZP_05655833.1| ribonuclease III [Enterococcus casseliflavus EC20]
 gi|325567330|ref|ZP_08143997.1| ribonuclease III [Enterococcus casseliflavus ATCC 12755]
 gi|420261504|ref|ZP_14764148.1| ribonuclease III [Enterococcus sp. C1]
 gi|257800534|gb|EEV29562.1| ribonuclease III [Enterococcus casseliflavus EC30]
 gi|257807072|gb|EEV35894.1| ribonuclease III [Enterococcus casseliflavus EC10]
 gi|257810346|gb|EEV39166.1| ribonuclease III [Enterococcus casseliflavus EC20]
 gi|325158763|gb|EGC70909.1| ribonuclease III [Enterococcus casseliflavus ATCC 12755]
 gi|394771438|gb|EJF51199.1| ribonuclease III [Enterococcus sp. C1]
          Length = 230

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 63/109 (57%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           +++ NERLEFLGDAV+E I S +L+   PD+ EG L   RAAIV+   L+  AK    ++
Sbjct: 40  HLSDNERLEFLGDAVLELIVSRYLYRELPDLPEGKLTKLRAAIVREDSLSMFAKDCRFDE 99

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           ++    G +     +    + + FEA +GAL+LD G++      + V++
Sbjct: 100 YIRLGKGEENSGGRKRPSLLCDLFEAFLGALYLDQGLESVSGFLTKVVF 148



 Score = 48.5 bits (114), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query: 975  VIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            ++F+ + LL + FT  S    + NL L  N+RLEFLGD VL+LI S YLY
Sbjct: 15   IVFHDVDLLEQAFTHSSYVNEHRNLHLSDNERLEFLGDAVLELIVSRYLY 64


>gi|448929841|gb|AGE53407.1| RNase III [Acanthocystis turfacea Chlorella virus GM0701.1]
          Length = 280

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 65/113 (57%), Gaps = 2/113 (1%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           E N    ERLEFLGD+V+ F+ + +L+ VFP   EG L   R   V  + L+ LA  +GL
Sbjct: 83  EENGETFERLEFLGDSVLGFLIARYLYDVFPGKNEGVLTRLRVKFVSGKLLSKLAHLLGL 142

Query: 877 EDFMLYAH-GSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 928
            +F++ +  G   C     K  + + FEAL+GA++LD GI+ A Q   SVL K
Sbjct: 143 HEFIIMSQKGLYRCWHTNPK-TLEDAFEALIGAIYLDLGINAARQFLMSVLTK 194


>gi|386389600|ref|ZP_10074414.1| ribonuclease III [Haemophilus paraphrohaemolyticus HK411]
 gi|385695370|gb|EIG25932.1| ribonuclease III [Haemophilus paraphrohaemolyticus HK411]
          Length = 222

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 15/160 (9%)

Query: 802 TLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAI 861
           TL  +   L  + A   N   NERLEFLGD+++ F     LF  FP   EG L+  RA +
Sbjct: 16  TLDYLTQALTHRSAASKN---NERLEFLGDSILNFTIGKALFDKFPKANEGELSRMRATL 72

Query: 862 VQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           V+ Q LA +A++  L D+M    G         +  +A+C EA++ A++LD G+D A Q 
Sbjct: 73  VREQTLAIIARQFDLGDYMKLGAGELKSGGYRRESILADCIEAIIAAIYLDKGMDQAMQK 132

Query: 922 ----FSSVL--------YKDNEVRFKQWMYYPQHPLQEQE 949
               +++ L         KD + R ++++   + PL E E
Sbjct: 133 VNDWYTTFLAEISPGDAQKDPKTRLQEFLQGRKLPLPEYE 172


>gi|385799690|ref|YP_005836094.1| RNAse III [Halanaerobium praevalens DSM 2228]
 gi|309389054|gb|ADO76934.1| RNAse III [Halanaerobium praevalens DSM 2228]
          Length = 237

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 59/202 (29%), Positives = 83/202 (41%), Gaps = 58/202 (28%)

Query: 728 LRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGD 787
           L+F +SL++        F N++LL+ ALTH SY       P+  R+              
Sbjct: 11  LKFEKSLDL-------NFNNKFLLERALTHKSY-------PNENRHL------------- 43

Query: 788 RRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFP 847
                                          N+  NERLEFLGD+V+    S ++F+ F 
Sbjct: 44  -------------------------------NLKDNERLEFLGDSVLSLSISTYIFNKFS 72

Query: 848 DIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMG 907
           D  EG LA  RA IV    LA  AKRI L  ++    G ++    E    +A+  EA+ G
Sbjct: 73  DFPEGDLAKMRAVIVSAPILAEAAKRINLGQYLFLGKGEEMTGGRERDSILADTMEAIFG 132

Query: 908 ALFLDGGIDVADQVFSSVLYKD 929
           AL+LD    V       +L  D
Sbjct: 133 ALYLDQSFKVVSDFILELLKVD 154



 Score = 40.8 bits (94), Expect = 3.7,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 964  KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYL 1021
            K L++ E S  + FN+  LL R  T +S    N  L L  N+RLEFLGD+VL L  S Y+
Sbjct: 9    KTLKF-EKSLDLNFNNKFLLERALTHKSYPNENRHLNLKDNERLEFLGDSVLSLSISTYI 67

Query: 1022 Y 1022
            +
Sbjct: 68   F 68


>gi|375086278|ref|ZP_09732694.1| ribonuclease III [Megamonas funiformis YIT 11815]
 gi|374565683|gb|EHR36946.1| ribonuclease III [Megamonas funiformis YIT 11815]
          Length = 236

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 3/110 (2%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDAV+E  +S +LF  F  + EG +   RA++V    LA LA  + +  ++L
Sbjct: 47  HNERLEFLGDAVLELASSTYLFKTFTQMPEGEMTKARASVVCETSLAKLAMNLNVGQYLL 106

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
              G  L         +A+ FE+++GA++LD G   A   +  VL K NE
Sbjct: 107 LGKGERLTGGEHRPSILADAFESIIGAIYLDQGWQTA---YEYVLDKLNE 153


>gi|94502127|ref|ZP_01308628.1| ribonuclease III [Bermanella marisrubri]
 gi|94425729|gb|EAT10736.1| ribonuclease III [Oceanobacter sp. RED65]
          Length = 226

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 58/95 (61%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD++V F+ +  LF  FP  +EG L+  RA +V+   LA LA+   L +F+L
Sbjct: 35  NNERLEFLGDSIVNFVVAEALFEKFPQAKEGKLSRLRAGLVRGTTLAELARDFDLGEFLL 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
              G         +  +A+  EA++GA++LD G+D
Sbjct: 95  LGSGELKSGGFNRESILADAVEAIIGAIYLDSGLD 129


>gi|84390104|ref|ZP_00991366.1| ribonuclease III [Vibrio splendidus 12B01]
 gi|86146359|ref|ZP_01064683.1| ribonuclease III [Vibrio sp. MED222]
 gi|218710569|ref|YP_002418190.1| ribonuclease III [Vibrio splendidus LGP32]
 gi|254807909|sp|B7VK79.1|RNC_VIBSL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|84376758|gb|EAP93633.1| ribonuclease III [Vibrio splendidus 12B01]
 gi|85835838|gb|EAQ53972.1| ribonuclease III [Vibrio sp. MED222]
 gi|218323588|emb|CAV19828.1| Ribonuclease III [Vibrio splendidus LGP32]
          Length = 225

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 12/136 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L D++ 
Sbjct: 35  HNERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGHTLAELGREFELGDYLK 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS------------VLYKD 929
              G            +A+  EA++GA++LD   +V  ++  S            V  KD
Sbjct: 95  LGPGELKSGGFRRDSILADAVEAIIGAVYLDSDTEVVRRIILSWYQSRLESIQPGVSQKD 154

Query: 930 NEVRFKQWMYYPQHPL 945
            + R ++++   ++PL
Sbjct: 155 PKTRLQEFLQGRRNPL 170


>gi|291533418|emb|CBL06531.1| RNAse III [Megamonas hypermegale ART12/1]
          Length = 240

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 3/110 (2%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDAV+E  +S +LF  F  + EG +   RA++V    LA LA  + +  ++L
Sbjct: 47  HNERLEFLGDAVLELASSTYLFKTFTQMPEGEMTKARASVVCETSLAKLAMNLNVGQYLL 106

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
              G  L         +A+ FE+++GA++LD G   A   +  VL K NE
Sbjct: 107 LGKGERLTGGEHRPSILADAFESIIGAIYLDQGWQTA---YEYVLDKLNE 153


>gi|387927066|ref|ZP_10129745.1| ribonuclease III [Bacillus methanolicus PB1]
 gi|387589210|gb|EIJ81530.1| ribonuclease III [Bacillus methanolicus PB1]
          Length = 253

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 75/159 (47%), Gaps = 17/159 (10%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P + EG L   RAA+V    L   A  +   + +L 
Sbjct: 58  NERLEFLGDAVLELTVSQYLFKKYPMMSEGELTKLRAAVVCEPSLVSFANELSFGELILL 117

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++         +A+ FEA +GAL+LD GI+   +    V++ K N   F   M Y 
Sbjct: 118 GKGEEMTGGRARPALLADVFEAFIGALYLDKGIETVTKFLEMVVFPKINAGAFSHVMDYK 177

Query: 942 QH----------------PLQEQEPDGDRQWVEQSPLLK 964
                              LQE+ P  +R++V +  L K
Sbjct: 178 SQLQELVQRDGAGTIEYRILQEKGPAHNREFVSRVSLNK 216



 Score = 41.6 bits (96), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 6/63 (9%)

Query: 964  KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSD 1019
            KQ +  +   G++F   +LL + FT  S  Y N         N+RLEFLGD VL+L  S 
Sbjct: 18   KQFKEFQERIGIVFGDEKLLKQAFTHSS--YVNEHRKKPYEDNERLEFLGDAVLELTVSQ 75

Query: 1020 YLY 1022
            YL+
Sbjct: 76   YLF 78


>gi|417315456|ref|ZP_12102132.1| ribonuclease III [Listeria monocytogenes J1816]
 gi|328466160|gb|EGF37317.1| ribonuclease III [Listeria monocytogenes J1816]
          Length = 222

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/109 (36%), Positives = 59/109 (54%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           N+  NERLEFLGDAV+E   S +LF+ +PD+ EG +   RAAIV    L   A+ +    
Sbjct: 38  NVKDNERLEFLGDAVLELTVSNYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSK 97

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           ++    G +          +A+ FE+ +GAL+LD GID        V++
Sbjct: 98  YVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVTFLERVIF 146



 Score = 43.9 bits (102), Expect = 0.41,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 6/64 (9%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 1018
            + Q + L+ S G  F  + LL + FT  S  Y N      +  N+RLEFLGD VL+L  S
Sbjct: 1    MNQWEELQESVGFDFKDVELLKQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 1019 DYLY 1022
            +YL+
Sbjct: 59   NYLF 62


>gi|238897755|ref|YP_002923434.1| RNase III, ds RNA [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259491902|sp|C4K3Z3.1|RNC_HAMD5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|229465512|gb|ACQ67286.1| RNase III, ds RNA [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 226

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 12/136 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ F+ +  L+H FP+I EG ++  RA +V+   L  +A+   +  ++ 
Sbjct: 36  HNERLEFLGDSILSFVIANQLYHRFPEINEGNMSRMRATLVRGDTLTEIAREFDIGAYLQ 95

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLYKD 929
              G       + +  +A+  EA++GA+FLD  I               +Q+  +   KD
Sbjct: 96  LGQGELKTGGAQRESILADSIEAIIGAIFLDSDIQTVEKTILRWYHKRLEQINPTHHQKD 155

Query: 930 NEVRFKQWMYYPQHPL 945
            + R +++M   Q PL
Sbjct: 156 PKTRLQEYMQSHQLPL 171


>gi|389573284|ref|ZP_10163359.1| ribonuclease III [Bacillus sp. M 2-6]
 gi|388426981|gb|EIL84791.1| ribonuclease III [Bacillus sp. M 2-6]
          Length = 247

 Score = 77.0 bits (188), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S  LF  +P + EG L   RAAIV    L  LA  +   D +L 
Sbjct: 56  NERLEFLGDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLL 115

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    +    +A+ FEA +GAL+LD G++  ++   + +Y K N+  F   M + 
Sbjct: 116 GKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEPVERFLEAYVYPKINDGAFSHVMDFK 175

Query: 942 QHPLQEQEPDG 952
               +  + DG
Sbjct: 176 SQLQEFVQRDG 186


>gi|383310849|ref|YP_005363659.1| ribonuclease III [Pasteurella multocida subsp. multocida str. HN06]
 gi|425062740|ref|ZP_18465865.1| Ribonuclease III [Pasteurella multocida subsp. gallicida X73]
 gi|380872121|gb|AFF24488.1| ribonuclease III [Pasteurella multocida subsp. multocida str. HN06]
 gi|404383446|gb|EJZ79897.1| Ribonuclease III [Pasteurella multocida subsp. gallicida X73]
          Length = 225

 Score = 77.0 bits (188), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 60/104 (57%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           + + HNERLEFLGDA++ FI +  L+H FP   EG L+  RA +V+   LA LA++  L 
Sbjct: 31  AAVKHNERLEFLGDAILNFIIAEALYHQFPKCNEGELSRMRATLVREPTLASLARQFELG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           D++    G         +  +A+C EA++GA+ LD  +    ++
Sbjct: 91  DYLSLGPGELKSGGFRRESILADCVEAIIGAISLDSDLATTTKI 134


>gi|206559398|ref|YP_002230159.1| ribonuclease III [Burkholderia cenocepacia J2315]
 gi|206561200|ref|YP_002231965.1| ribonuclease III [Burkholderia cenocepacia J2315]
 gi|198035436|emb|CAR51312.1| ribonuclease III 2 [Burkholderia cenocepacia J2315]
 gi|198037242|emb|CAR53164.1| ribonuclease III 1 [Burkholderia cenocepacia J2315]
          Length = 409

 Score = 77.0 bits (188), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 30  SATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISD 89

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 90  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 133


>gi|194014593|ref|ZP_03053210.1| ribonuclease III [Bacillus pumilus ATCC 7061]
 gi|194013619|gb|EDW23184.1| ribonuclease III [Bacillus pumilus ATCC 7061]
          Length = 247

 Score = 77.0 bits (188), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S  LF  +P + EG L   RAAIV    L  LA  +   D +L 
Sbjct: 56  NERLEFLGDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLL 115

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    +    +A+ FEA +GAL+LD G++  ++   + +Y K N+  F   M + 
Sbjct: 116 GKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEPVERFLEAYVYPKINDGAFSHVMDFK 175

Query: 942 QHPLQEQEPDG 952
               +  + DG
Sbjct: 176 SQLQEFVQRDG 186


>gi|157692273|ref|YP_001486735.1| ribonuclease III [Bacillus pumilus SAFR-032]
 gi|157681031|gb|ABV62175.1| ribonuclease III [Bacillus pumilus SAFR-032]
          Length = 247

 Score = 77.0 bits (188), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S  LF  +P + EG L   RAAIV    L  LA  +   D +L 
Sbjct: 56  NERLEFLGDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLL 115

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    +    +A+ FEA +GAL+LD G++  ++   + +Y K N+  F   M + 
Sbjct: 116 GKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEPVERFLEAYVYPKINDGAFSHVMDFK 175

Query: 942 QHPLQEQEPDG 952
               +  + DG
Sbjct: 176 SQLQEFVQRDG 186


>gi|442609958|ref|ZP_21024686.1| Ribonuclease III [Pseudoalteromonas luteoviolacea B = ATCC 29581]
 gi|441748550|emb|CCQ10748.1| Ribonuclease III [Pseudoalteromonas luteoviolacea B = ATCC 29581]
          Length = 225

 Score = 77.0 bits (188), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 56/100 (56%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ F+ +  LFH FP   EG L+  R+ +V+ Q LA       L D++ 
Sbjct: 35  HNERLEFLGDSILSFVIANALFHKFPKAREGDLSRMRSTLVRGQTLAEFGVEFNLGDYLR 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
              G         +  +A+  EA++GA+FLD  ID   ++
Sbjct: 95  LGPGELKSGGFRRESTLADAVEAIIGAVFLDSDIDTCAEL 134


>gi|428779359|ref|YP_007171145.1| ribonuclease III [Dactylococcopsis salina PCC 8305]
 gi|428693638|gb|AFZ49788.1| ribonuclease III [Dactylococcopsis salina PCC 8305]
          Length = 237

 Score = 77.0 bits (188), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 20/164 (12%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQH-LAHLAKRIGLEDFML 881
           NERLEFLGDAV+ F+    L+  +P + EG L+  RA +V N+H LA LA  +GL+  + 
Sbjct: 34  NERLEFLGDAVLGFLVGKLLYETYPQMREGELSRLRARLVNNEHQLAELALDLGLDRHLR 93

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGID-------------VADQVFSSVLYK 928
              G++  H  E    +++  EA++GA FLD GI+              A+   +S L +
Sbjct: 94  LGKGAEKDHTRENPEVLSDTLEAVIGAYFLDSGIEAVATFITPFFASRAAEIASTSELDQ 153

Query: 929 DNEVRFKQW--MYYPQHP----LQEQEPDGDRQWVEQSPLLKQL 966
           + + R ++W   Y+ + P    +QE   D  +++  +  +  Q+
Sbjct: 154 NYKGRLQEWALTYFGEIPRYLIVQESGEDHAKEFTAEVRIKNQV 197


>gi|332532635|ref|ZP_08408511.1| ribonuclease III [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037851|gb|EGI74300.1| ribonuclease III [Pseudoalteromonas haloplanktis ANT/505]
          Length = 225

 Score = 77.0 bits (188), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 54/95 (56%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ F+ +  L+  FP   EG L+  R+ +V+ Q LA      GL D++ 
Sbjct: 35  HNERLEFLGDSILSFVIANALYAKFPKAREGDLSRMRSTLVRGQTLAEFGLEFGLGDYLR 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
              G         +  +A+  EA++GA FLD GID
Sbjct: 95  LGPGELKSGGFRRESTLADAVEAIIGAAFLDSGID 129


>gi|239607869|gb|EEQ84856.1| dicer-like protein [Ajellomyces dermatitidis ER-3]
          Length = 1522

 Score = 77.0 bits (188), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 104/228 (45%), Gaps = 40/228 (17%)

Query: 824  ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM--- 880
            ERLEFLGD  ++  TSI LF + PD +E      R  ++ NQ+L + A RI L +F+   
Sbjct: 1075 ERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLICNQNLFNTAVRIKLYEFIRTQ 1134

Query: 881  ------LYAHGSDLCH-----EVELKHAM-----ANCFEALMGALFLDGG----IDVADQ 920
                   Y  G  L       E + KH++     A+  EAL+GA  L GG     D A +
Sbjct: 1135 GFSRRNWYPEGIKLLQGKAKSESQNKHSLGDKTIADICEALIGASLLSGGKAHRFDSAVK 1194

Query: 921  VFSSVLYKDNEVRFKQWMYY------PQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSG 974
              ++ +  D+  R  +W  Y      P + + + +         Q  L KQ+       G
Sbjct: 1195 AVTTFVNSDDH-RASEWNCYVNLYSLPDYQIAQADAG-------QLDLAKQIG---DRLG 1243

Query: 975  VIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
              F + RLL   FT  S       +   QRLEFLGD++L ++  +YLY
Sbjct: 1244 YQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLY 1291



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 24/113 (21%)

Query: 824  ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
            +RLEFLGD++++ +   +L+H +PD +   L  ++ A+V N+ L  +A ++GL   ++Y 
Sbjct: 1272 QRLEFLGDSLLDMVCVEYLYHRYPDRDPQWLTEHKMAMVSNKFLGAVAVKLGLHRHLIYF 1331

Query: 884  HGSDL------CHEVELKHAMAN------------------CFEALMGALFLD 912
              + L        E+EL  A +N                    EA +GA+F+D
Sbjct: 1332 SNALLGQITRYVEEIELAEADSNNSPDAWTTTSDPPKCLPDMLEAYIGAIFVD 1384


>gi|196000072|ref|XP_002109904.1| predicted protein [Trichoplax adhaerens]
 gi|190588028|gb|EDV28070.1| predicted protein [Trichoplax adhaerens]
          Length = 289

 Score = 77.0 bits (188), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 86/205 (41%), Gaps = 53/205 (25%)

Query: 381 LHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVT 440
           ++P  +  D  E+ +   C C   + + G+ H  Y GE                      
Sbjct: 112 VNPYYYKQDLIEVQNYSGCICKCTTNKKGLLHYKYVGEQS-------------------- 151

Query: 441 VSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVP 500
                    + PTVI  +N E++FEGFS+ SH+PLE +P                     
Sbjct: 152 ---------DHPTVIRKNNNEYVFEGFSILSHYPLENIP--------------------- 181

Query: 501 NGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLPMY 560
             +T++D ELF  +LF  +LEL D  LK  N  DG   F+ +P FVR+  +   E L + 
Sbjct: 182 -AYTLQDLELFQEFLFDHLLELPDWSLKDPNG-DG-RLFYFIPLFVRKSHEKSVETLSVA 238

Query: 561 RVLEFFTSSFVPVISEKLAKSKDDL 585
            VLE+  +   P+  +      DD+
Sbjct: 239 EVLEYILNFSQPLFDKPSTIRVDDI 263


>gi|225374436|ref|ZP_03751657.1| hypothetical protein ROSEINA2194_00051 [Roseburia inulinivorans DSM
           16841]
 gi|225213674|gb|EEG96028.1| hypothetical protein ROSEINA2194_00051 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score = 76.6 bits (187), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 88/211 (41%), Gaps = 53/211 (25%)

Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
           L+D+I Y+F+   LL+ ALTH S+      N  H R                        
Sbjct: 7   LQDKIGYEFKQEKLLRQALTHSSF-----ANEKHLRKH---------------------- 39

Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
                                   + NERLEFLGDAV+E ++S  L+  +PD  EG L  
Sbjct: 40  ------------------------SDNERLEFLGDAVLEIVSSDFLYKAYPDKSEGDLTK 75

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            RA++V    LA   + + L  ++    G +L         +++  EA++GA++LDGG +
Sbjct: 76  LRASLVCEPTLAICTREMELGKYLFLGKGENLTGGRNRNSILSDALEAVIGAIYLDGGFE 135

Query: 917 VADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
            A       +  D  +  K+  Y  +  LQE
Sbjct: 136 HAKTFIHKFILTD--IEHKKLFYDCKTSLQE 164


>gi|384135020|ref|YP_005517734.1| Ribonuclease III [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius Tc-4-1]
 gi|339289105|gb|AEJ43215.1| Ribonuclease III [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius Tc-4-1]
          Length = 241

 Score = 76.6 bits (187), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/102 (38%), Positives = 57/102 (55%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           ++  NERLEFLGDAV+E + S  L+  +P + EG L   RAAIV    L   AKR+  + 
Sbjct: 39  HVEDNERLEFLGDAVLELVVSDFLYRTYPKMPEGELTRMRAAIVCEASLVRFAKRLSFDQ 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ 920
           ++    G +          +A+ FEA +GAL+LD G++   Q
Sbjct: 99  YIRLGRGEERSGGRSRPALLADVFEAFLGALYLDQGLEAVRQ 140



 Score = 43.5 bits (101), Expect = 0.60,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 977  FNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            F+ I LL + FT  S    +  L +  N+RLEFLGD VL+L+ SD+LY
Sbjct: 16   FHDINLLKQAFTHASYRNEHRKLHVEDNERLEFLGDAVLELVVSDFLY 63


>gi|415886541|ref|ZP_11548321.1| ribonuclease III [Bacillus methanolicus MGA3]
 gi|387587228|gb|EIJ79551.1| ribonuclease III [Bacillus methanolicus MGA3]
          Length = 252

 Score = 76.6 bits (187), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 1/131 (0%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S  LF  +P + EG L   RAA+V    L   A  +   + +L 
Sbjct: 57  NERLEFLGDAVLELTVSQFLFKKYPMMSEGELTKLRAAVVCEPSLVSFANELSFGELVLL 116

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    E    +A+ FEA +GAL+LD GI+   +    V++ K N   F   M Y 
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDKGIETVTKFLEMVVFPKINAGAFSHVMDYK 176

Query: 942 QHPLQEQEPDG 952
               +  + DG
Sbjct: 177 SQLQELVQRDG 187


>gi|261198280|ref|XP_002625542.1| dicer-like protein [Ajellomyces dermatitidis SLH14081]
 gi|239595505|gb|EEQ78086.1| dicer-like protein [Ajellomyces dermatitidis SLH14081]
          Length = 1522

 Score = 76.6 bits (187), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 104/228 (45%), Gaps = 40/228 (17%)

Query: 824  ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM--- 880
            ERLEFLGD  ++  TSI LF + PD +E      R  ++ NQ+L + A RI L +F+   
Sbjct: 1075 ERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLICNQNLFNTAVRIKLYEFIRTQ 1134

Query: 881  ------LYAHGSDLCH-----EVELKHAM-----ANCFEALMGALFLDGG----IDVADQ 920
                   Y  G  L       E + KH++     A+  EAL+GA  L GG     D A +
Sbjct: 1135 GFSRRNWYPEGIKLLQGKAKSESQNKHSLGDKTIADICEALIGASLLSGGKAHRFDSAVK 1194

Query: 921  VFSSVLYKDNEVRFKQWMYY------PQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSG 974
              ++ +  D+  R  +W  Y      P + + + +         Q  L KQ+       G
Sbjct: 1195 AVTTFVNSDDH-RASEWNCYVNLYSLPDYQIAQADAG-------QLDLAKQIG---DRLG 1243

Query: 975  VIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
              F + RLL   FT  S       +   QRLEFLGD++L ++  +YLY
Sbjct: 1244 YQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLY 1291



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 24/113 (21%)

Query: 824  ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
            +RLEFLGD++++ +   +L+H +PD +   L  ++ A+V N+ L  +A ++GL   ++Y 
Sbjct: 1272 QRLEFLGDSLLDMVCVEYLYHRYPDRDPQWLTEHKMAMVSNKFLGAVAVKLGLHRHLIYF 1331

Query: 884  HGSDL------CHEVELKHAMAN------------------CFEALMGALFLD 912
              + L        E+EL  A +N                    EA +GA+F+D
Sbjct: 1332 SNALLGQITRYVEEIELAEADSNNSPDAWTTTSDPPKCLPDMLEAYIGAIFVD 1384


>gi|226313209|ref|YP_002773103.1| ribonuclease III [Brevibacillus brevis NBRC 100599]
 gi|226096157|dbj|BAH44599.1| ribonuclease III [Brevibacillus brevis NBRC 100599]
          Length = 246

 Score = 76.6 bits (187), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/108 (37%), Positives = 58/108 (53%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I+ NERLEFLGDAV+E   S  L+  FP + EG +   RAAIV    L   A+ +   D 
Sbjct: 56  ISDNERLEFLGDAVLELTVSQFLYKTFPKMSEGEMTKLRAAIVCEPSLVKFAELLNFGDL 115

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +L    +    +A+ FEA +GAL+LD G++         +Y
Sbjct: 116 VLLGKGEELTGGRQRPALLADVFEAFVGALYLDQGLEAVFSFMEKYVY 163


>gi|406659375|ref|ZP_11067513.1| ribonuclease III [Streptococcus iniae 9117]
 gi|405577484|gb|EKB51632.1| ribonuclease III [Streptococcus iniae 9117]
          Length = 230

 Score = 76.6 bits (187), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 46/134 (34%), Positives = 69/134 (51%), Gaps = 4/134 (2%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDAV++ I S +LF  +P   EG L+  R+ IV+ + LA  ++    + 
Sbjct: 39  NISHNERLEFLGDAVLQLIISEYLFAKYPKKAEGDLSKLRSMIVREESLAGFSRFCSFDT 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV----RF 934
           ++    G +          + + FEA +GAL LD G+D   +  + V+    E     R 
Sbjct: 99  YIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGVDEVRRFLNQVMIPQVEQGKFERV 158

Query: 935 KQWMYYPQHPLQEQ 948
           K +    Q  LQ Q
Sbjct: 159 KDYKTSLQEILQAQ 172



 Score = 45.1 bits (105), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 7/65 (10%)

Query: 963  LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 1017
            +K+L+  LE S  + F++  LL   FT  S  Y N    L +  N+RLEFLGD VLQLI 
Sbjct: 1    MKKLEALLEASFQIRFSNKSLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLII 58

Query: 1018 SDYLY 1022
            S+YL+
Sbjct: 59   SEYLF 63


>gi|416120344|ref|ZP_11594983.1| Ribonuclease III [Campylobacter concisus UNSWCD]
 gi|384576845|gb|EIF06166.1| Ribonuclease III [Campylobacter concisus UNSWCD]
          Length = 223

 Score = 76.6 bits (187), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/130 (31%), Positives = 74/130 (56%), Gaps = 8/130 (6%)

Query: 805 NIMSKLGRKVATESNITH--------NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
           N+  K  +    E  +TH        NERLEFLGDAV++ + + +LF  F  I EG ++ 
Sbjct: 10  NLGYKFKKSELLEEALTHKSTKQALNNERLEFLGDAVMDLLVAEYLFKKFSKIAEGDMSK 69

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            RAA+V  +  A++++R+ + +F+  +   +     E    +++ FEA+MGA++L+ G+D
Sbjct: 70  LRAALVNEKSFANMSRRLNMGEFLRLSQAEENNGGREKDSILSDAFEAVMGAIYLEAGLD 129

Query: 917 VADQVFSSVL 926
              ++  S+L
Sbjct: 130 KVREISISLL 139


>gi|218291547|ref|ZP_03495421.1| Ribonuclease III [Alicyclobacillus acidocaldarius LAA1]
 gi|258511329|ref|YP_003184763.1| ribonuclease III [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|218238642|gb|EED05867.1| Ribonuclease III [Alicyclobacillus acidocaldarius LAA1]
 gi|257478055|gb|ACV58374.1| ribonuclease III [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 241

 Score = 76.6 bits (187), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/102 (38%), Positives = 57/102 (55%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           ++  NERLEFLGDAV+E + S  L+  +P + EG L   RAAIV    L   AKR+  + 
Sbjct: 39  HVEDNERLEFLGDAVLELVVSDFLYRTYPKMPEGELTRMRAAIVCEASLVRFAKRLSFDQ 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ 920
           ++    G +          +A+ FEA +GAL+LD G++   Q
Sbjct: 99  YIRLGRGEERSGGRSRPALLADVFEAFLGALYLDQGLEAVRQ 140



 Score = 45.1 bits (105), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 977  FNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            FN + LL + FT  S    +  L +  N+RLEFLGD VL+L+ SD+LY
Sbjct: 16   FNDVNLLKQAFTHASYRNEHRKLHVEDNERLEFLGDAVLELVVSDFLY 63


>gi|119476421|ref|ZP_01616772.1| ribonuclease III [marine gamma proteobacterium HTCC2143]
 gi|119450285|gb|EAW31520.1| ribonuclease III [marine gamma proteobacterium HTCC2143]
          Length = 229

 Score = 76.6 bits (187), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 12/135 (8%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGD++V F+ +  LF  FP+  EG L+  RA +V+ + LA +AK   + + +  
Sbjct: 39  NERLEFLGDSIVNFLMAEALFQKFPECREGELSQMRAQLVKGETLAEIAKEFSVGEHLNL 98

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVL--------YKDN 930
             G         +  +A+  EAL+GA++LDGG+   ++     F S L         KD 
Sbjct: 99  GPGELKSGGYRRESILADAVEALIGAIYLDGGMAACNEHVPRWFESRLDLISPRNSNKDA 158

Query: 931 EVRFKQWMYYPQHPL 945
           + R ++W+   + PL
Sbjct: 159 KTRLQEWLQARKMPL 173


>gi|320161647|ref|YP_004174872.1| ribonuclease III [Anaerolinea thermophila UNI-1]
 gi|319995501|dbj|BAJ64272.1| ribonuclease III [Anaerolinea thermophila UNI-1]
          Length = 237

 Score = 76.6 bits (187), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 1/129 (0%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I  NERLEFLGDAV++F+    L++ +PD+ EG L   R+ +V  + L+  A+++ L   
Sbjct: 44  IEDNERLEFLGDAVLDFVVGAWLYNRYPDMPEGDLTRMRSVLVSTEQLSEFARKVDLGRA 103

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK-DNEVRFKQWM 938
           +    G       +    + + FEA++GA++LD GI+   +    +L K  +E+  +Q +
Sbjct: 104 LRLGKGETQAGGRDRPALLCDAFEAVIGAIYLDSGIEGVRRFIEPMLEKAADEILARQTI 163

Query: 939 YYPQHPLQE 947
             P+  LQE
Sbjct: 164 EDPKSMLQE 172


>gi|398879628|ref|ZP_10634719.1| ribonuclease III [Pseudomonas sp. GM67]
 gi|398882836|ref|ZP_10637801.1| ribonuclease III [Pseudomonas sp. GM60]
 gi|398196001|gb|EJM83019.1| ribonuclease III [Pseudomonas sp. GM67]
 gi|398198133|gb|EJM85097.1| ribonuclease III [Pseudomonas sp. GM60]
          Length = 208

 Score = 76.6 bits (187), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/99 (40%), Positives = 59/99 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDA++ F+    LF  FP   EG L+  RA +V+ + LA LA+   L D++ 
Sbjct: 14  NNERLEFLGDAILNFVAGEALFDRFPLAREGQLSRLRARLVKGETLAVLARGFDLGDYLR 73

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ 920
              G         +  +A+  EAL+GA++LD G+DVA +
Sbjct: 74  LGSGELKSGGFRRESILADALEALIGAIYLDAGMDVARE 112


>gi|398966014|ref|ZP_10681306.1| ribonuclease III [Pseudomonas sp. GM30]
 gi|424921555|ref|ZP_18344916.1| ribonuclease III [Pseudomonas fluorescens R124]
 gi|398146544|gb|EJM35282.1| ribonuclease III [Pseudomonas sp. GM30]
 gi|404302715|gb|EJZ56677.1| ribonuclease III [Pseudomonas fluorescens R124]
          Length = 208

 Score = 76.6 bits (187), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/99 (40%), Positives = 59/99 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDA++ F+    LF  FP   EG L+  RA +V+ + LA LA+   L D++ 
Sbjct: 14  NNERLEFLGDAILNFVAGEALFDRFPLAREGQLSRLRARLVKGETLAVLARGFDLGDYLR 73

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ 920
              G         +  +A+  EAL+GA++LD G+DVA +
Sbjct: 74  LGSGELKSGGFRRESILADALEALIGAIYLDAGMDVARE 112


>gi|407070433|ref|ZP_11101271.1| ribonuclease III [Vibrio cyclitrophicus ZF14]
          Length = 225

 Score = 76.6 bits (187), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 12/136 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L D++ 
Sbjct: 35  HNERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGHTLAELGREFELGDYLK 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLYKD 929
              G            +A+  EA++GA++LD   +V             D +   V  KD
Sbjct: 95  LGPGELKSGGFRRDSILADAVEAIIGAVYLDSDTEVVRGIILSWYQSRLDAIQPGVSQKD 154

Query: 930 NEVRFKQWMYYPQHPL 945
            + R ++++   ++PL
Sbjct: 155 PKTRLQEFLQGRRNPL 170


>gi|153005020|ref|YP_001379345.1| ribonuclease III [Anaeromyxobacter sp. Fw109-5]
 gi|152028593|gb|ABS26361.1| Ribonuclease III [Anaeromyxobacter sp. Fw109-5]
          Length = 377

 Score = 76.6 bits (187), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 54/99 (54%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           E  +  NERLEFLGDAV++   S  L   FP   EG L+  RAA+V  Q L+ +A+ + L
Sbjct: 50  EPGLGDNERLEFLGDAVIDLAVSHRLMERFPAAREGDLSKMRAAVVDEQGLSEMARALDL 109

Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGI 915
              +    G +L         +A+  EA++ AL+LD G+
Sbjct: 110 GSLLRLGRGEELTGGRRKASLLADAMEAVVAALYLDAGL 148


>gi|320352215|ref|YP_004193554.1| RNAse III [Desulfobulbus propionicus DSM 2032]
 gi|320120717|gb|ADW16263.1| RNAse III [Desulfobulbus propionicus DSM 2032]
          Length = 243

 Score = 76.6 bits (187), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/97 (42%), Positives = 57/97 (58%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNE  EFLGDAV++      LF  FP++ EG L   R+A+V  Q LA  A+ I L  ++L
Sbjct: 52  HNETQEFLGDAVLDLTVGYILFVRFPEMREGKLTRIRSALVNEQGLADRAREIDLGKYLL 111

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
              G +  +  +    ++  +EAL+GALFLDGG D A
Sbjct: 112 LGKGENASNGRDKSSILSCAYEALVGALFLDGGYDQA 148


>gi|400537019|ref|ZP_10800553.1| ribonuclease III [Mycobacterium colombiense CECT 3035]
 gi|400330032|gb|EJO87531.1| ribonuclease III [Mycobacterium colombiense CECT 3035]
          Length = 237

 Score = 76.6 bits (187), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 61/102 (59%), Gaps = 3/102 (2%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI---GLEDF 879
           NERLEFLGDAV+    +  L+H  PD  EG LA  RA++V  Q LA +A+++   GL   
Sbjct: 39  NERLEFLGDAVLGLTITDELYHRHPDRTEGDLAKLRASVVNTQALADVARKLCEGGLGVH 98

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           ++   G       +    +A+  E+L+GA++LD GIDVA +V
Sbjct: 99  LMLGRGEANTGGADKSSILADGMESLLGAIYLDHGIDVARKV 140


>gi|239906016|ref|YP_002952755.1| ribonuclease III [Desulfovibrio magneticus RS-1]
 gi|239795880|dbj|BAH74869.1| ribonuclease III [Desulfovibrio magneticus RS-1]
          Length = 243

 Score = 76.6 bits (187), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 47/123 (38%), Positives = 64/123 (52%), Gaps = 7/123 (5%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDAV+E   S  LF +FP+  EG L   R+ +V    LA +A R+GL   + 
Sbjct: 51  HNERLEFLGDAVLELCVSEELFSLFPEAPEGELTLLRSQLVNEASLAAMALRLGLAGHVR 110

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYP 941
              G +          +++ FEA++GA+FLDGG   A + F S  +        QW   P
Sbjct: 111 LGRGEENQGGRSRPSLLSDVFEAVVGAIFLDGGYTAA-RAFVSRTFDG------QWPERP 163

Query: 942 QHP 944
             P
Sbjct: 164 AAP 166


>gi|172060069|ref|YP_001807721.1| ribonuclease III [Burkholderia ambifaria MC40-6]
 gi|171992586|gb|ACB63505.1| Ribonuclease III [Burkholderia ambifaria MC40-6]
          Length = 425

 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + +
Sbjct: 30  SATHNERLEFLGDSVLNCAVAALLFQRFSKLDEGDLSRVRANLVKQQSLYEIAQALNISE 89

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 90  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 133


>gi|358063738|ref|ZP_09150342.1| ribonuclease III [Clostridium hathewayi WAL-18680]
 gi|356698064|gb|EHI59620.1| ribonuclease III [Clostridium hathewayi WAL-18680]
          Length = 246

 Score = 76.6 bits (187), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 63/217 (29%), Positives = 91/217 (41%), Gaps = 53/217 (24%)

Query: 731 HRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRI 790
           +R L  LE  I Y FQ++ +L  A+TH S                               
Sbjct: 2   NRKLEELEQAIGYSFQDKQMLTHAMTHSS------------------------------- 30

Query: 791 HFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIE 850
            + N  +         M KL            NERLEFLGDAV+E ++S  L+H +    
Sbjct: 31  -YANEHR---------MDKL----------MCNERLEFLGDAVLEIVSSDFLYHKYGQSP 70

Query: 851 EGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALF 910
           EG L   RA+IV    LA  A  I L +++L   G D          +++  EAL+GA++
Sbjct: 71  EGELTKVRASIVCEPTLAFCAGEIHLGEYLLLGKGEDATGGRGRNSIVSDAMEALIGAIY 130

Query: 911 LDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
           LDGG   A +     +   N++  KQ  +  +  LQE
Sbjct: 131 LDGGFANAKEFIHRFIL--NDIEHKQLFFDSKTILQE 165



 Score = 43.5 bits (101), Expect = 0.56,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 964  KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITSD 1019
            ++L+ LE + G  F   ++L    T  S  Y N      L  N+RLEFLGD VL++++SD
Sbjct: 3    RKLEELEQAIGYSFQDKQMLTHAMTHSS--YANEHRMDKLMCNERLEFLGDAVLEIVSSD 60

Query: 1020 YLY 1022
            +LY
Sbjct: 61   FLY 63


>gi|327355811|gb|EGE84668.1| hypothetical protein BDDG_07613 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1509

 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 104/228 (45%), Gaps = 40/228 (17%)

Query: 824  ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM--- 880
            ERLEFLGD  ++  TSI LF + PD +E      R  ++ NQ+L + A RI L +F+   
Sbjct: 1062 ERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLICNQNLFNTAVRIKLYEFIRTQ 1121

Query: 881  ------LYAHGSDLCH-----EVELKHAM-----ANCFEALMGALFLDGG----IDVADQ 920
                   Y  G  L       E + KH++     A+  EAL+GA  L GG     D A +
Sbjct: 1122 GFSRRNWYPEGIKLLQGKAKSESQNKHSLGDKTIADICEALIGASLLSGGKAHRFDSAVK 1181

Query: 921  VFSSVLYKDNEVRFKQWMYY------PQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSG 974
              ++ +  D+  R  +W  Y      P + + + +         Q  L KQ+       G
Sbjct: 1182 AVTTFVNSDDH-RASEWNCYVNLYSLPDYQIAQADAG-------QLDLAKQIG---DRLG 1230

Query: 975  VIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
              F + RLL   FT  S       +   QRLEFLGD++L ++  +YLY
Sbjct: 1231 YQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLY 1278



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 24/113 (21%)

Query: 824  ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
            +RLEFLGD++++ +   +L+H +PD +   L  ++ A+V N+ L  +A ++GL   ++Y 
Sbjct: 1259 QRLEFLGDSLLDMVCVEYLYHRYPDRDPQWLTEHKMAMVSNKFLGAVAVKLGLHRHLIYF 1318

Query: 884  HGSDL------CHEVELKHAMAN------------------CFEALMGALFLD 912
              + L        E+EL  A +N                    EA +GA+F+D
Sbjct: 1319 SNALLGQITRYVEEIELAEADSNNSPDAWTTTSDPPKCLPDMLEAYIGAIFVD 1371


>gi|302693114|ref|XP_003036236.1| hypothetical protein SCHCODRAFT_31237 [Schizophyllum commune H4-8]
 gi|300109932|gb|EFJ01334.1| hypothetical protein SCHCODRAFT_31237, partial [Schizophyllum commune
            H4-8]
          Length = 1342

 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 98/215 (45%), Gaps = 30/215 (13%)

Query: 822  HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
            +N+RLE LGDAV+E  T++HLF+ +P   EG L   R   + N+ L   A+ + LE F+ 
Sbjct: 943  NNQRLETLGDAVLELSTTVHLFNKYPHRHEGQLTPLRQICISNKCLLTRAREVQLERFLT 1002

Query: 882  ----------YAHGSDL----CHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
                      Y   S++       +  + ++ +C EA++GA +L GGID A    +++  
Sbjct: 1003 SETHSLSIWDYVEDSEVPARCARRLFPRRSLQDCMEAILGASYLTGGIDTALHAGTAL-- 1060

Query: 928  KDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVF 987
                + F          +        R+ V    L  +LQ      G  F    LL    
Sbjct: 1061 ---GLAFGG-------SVPWPRRYPRRRRVPTPDLFSELQ---AKLGYTFRDGGLLCEAL 1107

Query: 988  TTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            T  S    + + GS +RLEFLGD V+ L   DYLY
Sbjct: 1108 THSSFASLD-SYGSYERLEFLGDAVINLAVVDYLY 1141



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 89/206 (43%), Gaps = 58/206 (28%)

Query: 824  ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
            ERLEFLGDAV+      +L+  FPD     L+  RA  V NQ L+ L+ +       L  
Sbjct: 1122 ERLEFLGDAVINLAVVDYLYRKFPDANSDQLSLPRARAVCNQALSALSVK------HLQL 1175

Query: 884  HGSDLCHEVEL-----KHA-----------------------MANCFEALMGALFLDGGI 915
            H S L + VEL     KHA                       +++ FE+++GA+F+D G 
Sbjct: 1176 HKSVLVNNVELSIAINKHAPILEDKPYPEILVKGWKLDPPKVLSDIFESIVGAVFVDTGY 1235

Query: 916  D------VADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYL 969
            D      V +Q    +L     V     M  P+ P+ E        WV +S   +Q+++ 
Sbjct: 1236 DYEITAAVVEQAMEGLL-----VHLSPAM--PRDPVSEL-----IIWVAKSTCREQIEFR 1283

Query: 970  -----EYSSGV-IFNHIRLLARVFTT 989
                 +Y  G+ I+ H  LLA   TT
Sbjct: 1284 FVRRKQYPDGIAIYLHGTLLAGPITT 1309


>gi|422416325|ref|ZP_16493282.1| ribonuclease III [Listeria innocua FSL J1-023]
 gi|313623280|gb|EFR93523.1| ribonuclease III [Listeria innocua FSL J1-023]
          Length = 229

 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 59/109 (54%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           N+  NERLEFLGDAV+E   S +LF+ +PD+ EG +   RAAIV    L   A+ +    
Sbjct: 38  NVKDNERLEFLGDAVLELTVSDYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSK 97

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           ++    G +          +A+ FE+ +GAL+LD GID        V++
Sbjct: 98  YVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVTFLERVIF 146



 Score = 45.8 bits (107), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 6/64 (9%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 1018
            + Q + L+ S G  F ++ LL + FT  S  Y N      +  N+RLEFLGD VL+L  S
Sbjct: 1    MNQWEELQESVGFDFQNVELLQQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 1019 DYLY 1022
            DYL+
Sbjct: 59   DYLF 62


>gi|359440809|ref|ZP_09230722.1| ribonuclease III [Pseudoalteromonas sp. BSi20429]
 gi|392533274|ref|ZP_10280411.1| RNase III, ds RNA [Pseudoalteromonas arctica A 37-1-2]
 gi|358037515|dbj|GAA66971.1| ribonuclease III [Pseudoalteromonas sp. BSi20429]
          Length = 225

 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 54/95 (56%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ F+ +  L+  FP   EG L+  R+ +V+ Q LA      GL D++ 
Sbjct: 35  HNERLEFLGDSILSFVIANALYAKFPKAREGDLSRMRSTLVRGQTLAEFGLEFGLGDYLR 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
              G         +  +A+  EA++GA FLD GID
Sbjct: 95  LGPGELKSGGFRRESTLADAVEAIIGAAFLDSGID 129


>gi|326203626|ref|ZP_08193490.1| ribonuclease III [Clostridium papyrosolvens DSM 2782]
 gi|325986446|gb|EGD47278.1| ribonuclease III [Clostridium papyrosolvens DSM 2782]
          Length = 236

 Score = 76.6 bits (187), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/99 (40%), Positives = 60/99 (60%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + +NERLEFLGD+V+  + S +LF   P++ EG L+  RA IV    L+  A  I L  +
Sbjct: 45  LKYNERLEFLGDSVLGLVISEYLFQKKPNLPEGELSVTRAKIVCENSLSQCATDISLGKY 104

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
           +L   G +L    E    +++ FEAL+GAL++DGG + A
Sbjct: 105 LLLGKGEELSGGREKISLLSDAFEALIGALYIDGGFETA 143


>gi|335043305|ref|ZP_08536332.1| hypothetical protein MAMP_02795 [Methylophaga aminisulfidivorans
           MP]
 gi|333789919|gb|EGL55801.1| hypothetical protein MAMP_02795 [Methylophaga aminisulfidivorans
           MP]
          Length = 227

 Score = 76.6 bits (187), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 77/136 (56%), Gaps = 12/136 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLE+LGDA++ F+ +  LF+ FP ++EG L+  RA++V+ + LA L + + L D ++
Sbjct: 36  NNERLEYLGDAILSFVIAEELFNRFPQVKEGKLSRLRASLVKGETLAELGRELKLGDVLI 95

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGI----DVADQVFSSVL--------YKD 929
              G         +  +A+  EA++GAL+LD G+    D+  ++F+  L         KD
Sbjct: 96  LGPGELKSGGFRRESILADAVEAILGALYLDSGLTPVKDLILRLFAERLDAIDVTETVKD 155

Query: 930 NEVRFKQWMYYPQHPL 945
            + R ++ +   + PL
Sbjct: 156 PKTRLQELLQSRKQPL 171


>gi|319789592|ref|YP_004151225.1| ribonuclease III [Thermovibrio ammonificans HB-1]
 gi|317114094|gb|ADU96584.1| ribonuclease III [Thermovibrio ammonificans HB-1]
          Length = 236

 Score = 76.6 bits (187), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 49/144 (34%), Positives = 70/144 (48%), Gaps = 7/144 (4%)

Query: 812 RKVATESNITHN-ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
           R  A E +   N E LEFLGDAV+  I S  L   FP+  EG L+  RA +V    L+ L
Sbjct: 31  RSFAFEKDTGENYEVLEFLGDAVIGLIVSEELIKRFPEKSEGELSQIRAFLVSEPSLSKL 90

Query: 871 AKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK-- 928
           A+ I L  F+    G       E    + + FE++ GAL+LD G + A ++F +   K  
Sbjct: 91  ARTINLGQFLYLGKGEKRTGGREKDSILCDVFESVFGALYLDAGFEKAKEIFKNKFLKKL 150

Query: 929 ----DNEVRFKQWMYYPQHPLQEQ 948
               +N V +K +  Y Q   Q +
Sbjct: 151 WEILENAVTYKDFKSYLQEITQRE 174


>gi|407477596|ref|YP_006791473.1| ribonuclease 3 [Exiguobacterium antarcticum B7]
 gi|407061675|gb|AFS70865.1| Ribonuclease 3 [Exiguobacterium antarcticum B7]
          Length = 269

 Score = 76.6 bits (187), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/105 (39%), Positives = 58/105 (55%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +  ++EG L   RAAIV    L   A      + +L 
Sbjct: 81  NERLEFLGDAVLELTVSRYLFQHYHLVDEGELTKLRAAIVCEPSLVQFANHYQFSEMILL 140

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             G +L         +A+ FEA +GAL+LD GID A++  +  ++
Sbjct: 141 GKGEELTGGRNRPALLADVFEAFIGALYLDQGIDAAERFLAEAVF 185


>gi|329116187|ref|ZP_08244904.1| ribonuclease III [Streptococcus parauberis NCFD 2020]
 gi|333904610|ref|YP_004478481.1| ribonuclease III [Streptococcus parauberis KCTC 11537]
 gi|326906592|gb|EGE53506.1| ribonuclease III [Streptococcus parauberis NCFD 2020]
 gi|333119875|gb|AEF24809.1| ribonuclease III [Streptococcus parauberis KCTC 11537]
 gi|456370486|gb|EMF49382.1| Ribonuclease III [Streptococcus parauberis KRS-02109]
 gi|457095933|gb|EMG26404.1| Ribonuclease III [Streptococcus parauberis KRS-02083]
          Length = 230

 Score = 76.6 bits (187), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 1/136 (0%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDAV++ I S +LF  +P+  EG ++  R+ IV+ + LA  ++    ++
Sbjct: 39  NISHNERLEFLGDAVLQLIISEYLFEKYPNKAEGDMSKQRSMIVREESLAGFSRFCTFDN 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQW 937
           ++    G +          + + FEA +GAL LD G++   +    V+    E   F+Q 
Sbjct: 99  YIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGVEKVRKFLYQVMIPQVEKGTFEQV 158

Query: 938 MYYPQHPLQEQEPDGD 953
           M Y  +  +  +  GD
Sbjct: 159 MDYKTNLQELLQSQGD 174



 Score = 42.4 bits (98), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 7/65 (10%)

Query: 963  LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 1017
            +K+L+  L+ S  + F    LL   FT  S  Y N    L +  N+RLEFLGD VLQLI 
Sbjct: 1    MKKLEVLLKDSFDITFADRNLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLII 58

Query: 1018 SDYLY 1022
            S+YL+
Sbjct: 59   SEYLF 63


>gi|424866003|ref|ZP_18289854.1| ribonuclease III [SAR86 cluster bacterium SAR86B]
 gi|400758159|gb|EJP72369.1| ribonuclease III [SAR86 cluster bacterium SAR86B]
          Length = 219

 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 82/180 (45%), Gaps = 59/180 (32%)

Query: 734 LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
           LN +E+ + YKF N  LL LALTH S+        D A+N                    
Sbjct: 2   LNKIEEILGYKFSNIQLLDLALTHKSF--------DKAKN-------------------- 33

Query: 794 NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
                                        NERLEFLGDAV+  I S HL +++PD  EG 
Sbjct: 34  -----------------------------NERLEFLGDAVLNLIISEHLSNIYPDETEGS 64

Query: 854 LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHG-SDLCHEVELKHAMANCFEALMGALFLD 912
           L   R+ IV+ + L  +   +G+++F+  + G S++ H+ +L     +C E+L+ A++LD
Sbjct: 65  LTRMRSLIVKGESLTSVFLNLGIKEFIKLSKGTSNIEHDKKL-SIYEDCMESLIAAIYLD 123


>gi|229588601|ref|YP_002870720.1| ribonuclease III [Pseudomonas fluorescens SBW25]
 gi|259491960|sp|C3K6Y7.1|RNC_PSEFS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|229360467|emb|CAY47324.1| ribonuclease III [Pseudomonas fluorescens SBW25]
          Length = 229

 Score = 76.6 bits (187), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/110 (36%), Positives = 64/110 (58%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDA++ F+    LF  FP   EG L+  RA +V+ + LA LA+  GL +++ 
Sbjct: 35  NNERLEFLGDAILNFVAGEALFERFPQAREGQLSRLRARLVKGETLAVLARGFGLGEYLR 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
              G         +  +A+  EAL+GA++LD G++ A +  ++ L  + E
Sbjct: 95  LGSGELKSGGFRRESILADALEALIGAIYLDAGMEAAKERVTAWLTSEIE 144


>gi|419801886|ref|ZP_14327089.1| ribonuclease III [Haemophilus parainfluenzae HK262]
 gi|385192253|gb|EIF39659.1| ribonuclease III [Haemophilus parainfluenzae HK262]
          Length = 227

 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 11/136 (8%)

Query: 800 INTLINIMSKLGRKVATESNIT-----------HNERLEFLGDAVVEFITSIHLFHVFPD 848
           +N L  +  K+G + +   N+T           HNERLEFLGD+++ ++ +  L+H FP 
Sbjct: 1   MNHLDRLERKIGYQFSDLKNLTLALTHRSASTQHNERLEFLGDSILNYVIADALYHQFPR 60

Query: 849 IEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGA 908
             EG L+  RA +V+   LA LA+   L D+M    G         +  +A+C EA++GA
Sbjct: 61  CNEGELSRMRATLVREPTLAMLARNFELGDYMSLGSGELKSGGFRRESILADCVEAVIGA 120

Query: 909 LFLDGGIDVADQVFSS 924
           + LD   D A  +  S
Sbjct: 121 MALDSSFDKAADIVRS 136


>gi|373451001|ref|ZP_09542940.1| Ribonuclease 3 [Wolbachia pipientis wAlbB]
 gi|371931808|emb|CCE77958.1| Ribonuclease 3 [Wolbachia pipientis wAlbB]
          Length = 233

 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 55/188 (29%)

Query: 735 NVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQN 794
           +++   I YKF +  +L+ ALTHPS          + RNS                    
Sbjct: 9   DIISKVINYKFTDHAILEEALTHPSV---------NKRNS-------------------- 39

Query: 795 TRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGL 854
                                 E  I   ERLEFLGD+++  + S  LF +FP+ +EG L
Sbjct: 40  ----------------------EDQIVSYERLEFLGDSILNMVVSAMLFKMFPEEKEGAL 77

Query: 855 ATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCH--EVELKHAMANCFEALMGALFLD 912
           A  +  +V    +A++AK I L +F++  + S+ C+  +  LK+ + N  EAL+GA+++D
Sbjct: 78  AKRKTDLVCGSTIANVAKEIELGNFIIM-NNSERCNGGKCNLKN-LENSLEALIGAIYID 135

Query: 913 GGIDVADQ 920
           GG++  ++
Sbjct: 136 GGLESVEK 143


>gi|299536778|ref|ZP_07050086.1| ribonuclease 3 [Lysinibacillus fusiformis ZC1]
 gi|424737014|ref|ZP_18165470.1| ribonuclease 3 [Lysinibacillus fusiformis ZB2]
 gi|298727790|gb|EFI68357.1| ribonuclease 3 [Lysinibacillus fusiformis ZC1]
 gi|422948846|gb|EKU43222.1| ribonuclease 3 [Lysinibacillus fusiformis ZB2]
          Length = 254

 Score = 76.6 bits (187), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/112 (38%), Positives = 60/112 (53%)

Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
           T NERLEFLGDAV+E   S +LF  +P++ EG L   RA+IV    L   A  +G   F+
Sbjct: 59  TDNERLEFLGDAVLELSVSKYLFEKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFV 118

Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV 932
           L   G +L    E    +A+ FE+ +GAL+LD  +         V++   EV
Sbjct: 119 LLGKGEELTGGRERPALLADVFESFVGALYLDQDLQTVVSFLERVVFPKVEV 170


>gi|78044311|ref|YP_360276.1| ribonuclease III [Carboxydothermus hydrogenoformans Z-2901]
 gi|90101616|sp|Q3AC58.1|RNC_CARHZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|77996426|gb|ABB15325.1| ribonuclease III [Carboxydothermus hydrogenoformans Z-2901]
          Length = 235

 Score = 76.6 bits (187), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 57/102 (55%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           E  I HNERLEFLGDAV+E   S +LF  FP   EG L   R+ +V  + L  LA +I L
Sbjct: 38  EEGIEHNERLEFLGDAVLELFISDYLFRTFPQKSEGDLTKLRSRLVCAESLYELAFKINL 97

Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
           + F+    G       +    +AN  EA++GA++ D GI+ A
Sbjct: 98  DKFLRLGKGEFKAGGNQRMSNLANAVEAVIGAVYFDCGIEAA 139



 Score = 39.7 bits (91), Expect = 9.1,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 964  KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG--SNQRLEFLGDTVLQLITSDYL 1021
            + L  LE   G  FN+  +L    T  S  + +   G   N+RLEFLGD VL+L  SDYL
Sbjct: 4    ENLISLEKILGFNFNNPSILLSAITHPSYAFEHPEEGIEHNERLEFLGDAVLELFISDYL 63

Query: 1022 Y 1022
            +
Sbjct: 64   F 64


>gi|269958484|ref|YP_003328271.1| ribonuclease 3 [Anaplasma centrale str. Israel]
 gi|269848313|gb|ACZ48957.1| ribonuclease 3 [Anaplasma centrale str. Israel]
          Length = 249

 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 53/90 (58%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           ERLEFLGDAV+    S  L+ +FPD +EG L   R A+V+   +  +A+ IGL   +L +
Sbjct: 49  ERLEFLGDAVLSMAVSEMLYRLFPDDDEGCLTQKRTALVRGSEVVEIARSIGLGGLILMS 108

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDG 913
            G   C   +    + N  EAL+GA+++DG
Sbjct: 109 SGEMSCGGSDNPGTLENALEALIGAMYIDG 138


>gi|210622528|ref|ZP_03293221.1| hypothetical protein CLOHIR_01169, partial [Clostridium hiranonis
           DSM 13275]
 gi|210154163|gb|EEA85169.1| hypothetical protein CLOHIR_01169 [Clostridium hiranonis DSM 13275]
          Length = 204

 Score = 76.6 bits (187), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/105 (40%), Positives = 61/105 (58%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NER+EFLGD+V+  + S H+F     + EG L   RA IV    L+  AK I L D++L
Sbjct: 13  YNERMEFLGDSVLGLVISDHIFKKETGVPEGELTKLRANIVCEGSLSEAAKNIRLGDYIL 72

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
              G +     E K  +A+ FEA++ A++LDGGI+ A +   S L
Sbjct: 73  LGRGEEATGGRERKSILADAFEAVIAAIYLDGGIESASKFILSNL 117


>gi|116515099|ref|YP_802728.1| hypothetical protein BCc_163 [Buchnera aphidicola BCc]
 gi|122285505|sp|Q057R4.1|RNC_BUCCC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116256953|gb|ABJ90635.1| ribonuclease III [Buchnera aphidicola BCc]
          Length = 226

 Score = 76.3 bits (186), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 27/164 (16%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ FI +  L+H FP + EGG++  RA +V+   LA +A    L  ++ 
Sbjct: 36  HNERLEFLGDSILSFIIAKALYHHFPKMNEGGMSRMRATLVRGNTLAEIATEFSLGKYLQ 95

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYP 941
              G       + +  +AN  EA++ ++FLD  I   +++                +Y+ 
Sbjct: 96  LGQGEKKSGGFKRESILANAIEAIIASIFLDSNIYTVERII---------------LYWY 140

Query: 942 QHPLQEQEPDGDRQWVEQSPLLKQLQYLE--------YSSGVIF 977
           ++  ++  P G +    + P  +  +YL+        YS G I+
Sbjct: 141 KNRFKKMNPTGTK----KDPKTRLQEYLQSKHFSLPIYSIGQIY 180


>gi|258514469|ref|YP_003190691.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771]
 gi|257778174|gb|ACV62068.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771]
          Length = 259

 Score = 76.3 bits (186), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 60/96 (62%)

Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
           T+N+RLEFLGDAV+E + S +L+  +P+  EG L   RAAIV    LA +A+++ L   +
Sbjct: 44  TNNQRLEFLGDAVLELLVSGYLYSSYPECAEGELTKLRAAIVCEPSLAKVARQLNLGYCL 103

Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
               G +     E    +A+ FEAL+GA++LD G++
Sbjct: 104 RMGKGEERSGGRERPSILADSFEALLGAVYLDQGLE 139



 Score = 42.7 bits (99), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 974  GVIFNHIRLLARVFTTRSMGYTNLTLG--SNQRLEFLGDTVLQLITSDYLY 1022
            GV +N   LL +  T  S  Y + +    +NQRLEFLGD VL+L+ S YLY
Sbjct: 16   GVAWNDENLLWQALTHSSYVYESGSAAHTNNQRLEFLGDAVLELLVSGYLY 66


>gi|172057915|ref|YP_001814375.1| ribonuclease III [Exiguobacterium sibiricum 255-15]
 gi|171990436|gb|ACB61358.1| Ribonuclease III [Exiguobacterium sibiricum 255-15]
          Length = 256

 Score = 76.3 bits (186), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/105 (39%), Positives = 58/105 (55%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  +P+  EG L   RAAIV    L   A      + +L 
Sbjct: 68  NERLEFLGDAVLELTVSRYLFQHYPERSEGELTKLRAAIVCEPSLVQFANHYEFSEMILL 127

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             G +L         +A+ FEA +GAL+LD GI+ A++  +  ++
Sbjct: 128 GKGEELTGGRNRPALLADVFEAFIGALYLDQGIEAAERFLAEAVF 172


>gi|429726089|ref|ZP_19260899.1| ribonuclease III [Prevotella sp. oral taxon 473 str. F0040]
 gi|429148130|gb|EKX91143.1| ribonuclease III [Prevotella sp. oral taxon 473 str. F0040]
          Length = 840

 Score = 76.3 bits (186), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 67/123 (54%), Gaps = 13/123 (10%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDAV+E + S  ++  +P+  EG L   R+ IV  + L  LAK +G+ D ++
Sbjct: 58  NNERLEFLGDAVLETVVSHIVYRQYPNKREGFLTNTRSKIVSRESLGKLAKELGI-DRLI 116

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ-----VFSSVLYKD----NEV 932
            +      H   L+    N FEALMGA++LD G   A Q     +  +VL  D     EV
Sbjct: 117 QSQTHGRTHNSYLE---GNSFEALMGAIYLDRGFRYAFQFIEKRIIGAVLDLDTVANKEV 173

Query: 933 RFK 935
            FK
Sbjct: 174 NFK 176


>gi|336117263|ref|YP_004572030.1| ribonuclease III [Microlunatus phosphovorus NM-1]
 gi|334685042|dbj|BAK34627.1| ribonuclease III [Microlunatus phosphovorus NM-1]
          Length = 233

 Score = 76.3 bits (186), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/99 (41%), Positives = 60/99 (60%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           +  I  NERLEFLGD+V+  I + HLF  +PD+ EG LA  RAA+V ++ LA +A+ + L
Sbjct: 41  QGGIPTNERLEFLGDSVLGVIVTEHLFISYPDLSEGQLAKLRAAVVNSRALADVARGLQL 100

Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGI 915
              +    G D     E    +A+  EA++GA+FL+ GI
Sbjct: 101 GGRIHLGRGEDSTGGREKSSILADTMEAVIGAVFLEHGI 139


>gi|436841571|ref|YP_007325949.1| Ribonuclease 3 [Desulfovibrio hydrothermalis AM13 = DSM 14728]
 gi|432170477|emb|CCO23848.1| Ribonuclease 3 [Desulfovibrio hydrothermalis AM13 = DSM 14728]
          Length = 237

 Score = 76.3 bits (186), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 55/95 (57%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           +  NERLEFLGDAV+E   +  LF  F D  EG L   R+ +V+ + LA +A  + L DF
Sbjct: 39  VEDNERLEFLGDAVLELCVTEELFKRFKDAHEGQLTKIRSKLVKEKSLAAIALELELNDF 98

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGG 914
           +L   G +          +A+  EA++GA+FLDGG
Sbjct: 99  LLLGKGEEAQGGRTRSSLLADAMEAVIGAVFLDGG 133


>gi|389815314|ref|ZP_10206660.1| ribonuclease 3 [Planococcus antarcticus DSM 14505]
 gi|388466093|gb|EIM08402.1| ribonuclease 3 [Planococcus antarcticus DSM 14505]
          Length = 251

 Score = 76.3 bits (186), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 48/128 (37%), Positives = 67/128 (52%), Gaps = 2/128 (1%)

Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
           T NERLEFLGDAV+E   S +L+  +P++ EG L   RAAIV    L   A  +G   ++
Sbjct: 59  TDNERLEFLGDAVLELSVSHYLYMKYPEMSEGELTKLRAAIVCEPSLVLFANELGFGKYI 118

Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWMY 939
           L   G +L         +A+ FE+ +GAL+LD G++        VL+   E+  F   M 
Sbjct: 119 LLGKGEELTGGRTRPALLADVFESYIGALYLDQGLEPVVTFLEMVLFPKVEIGAFSHVMD 178

Query: 940 YPQHPLQE 947
           Y    LQE
Sbjct: 179 YKSQ-LQE 185



 Score = 42.0 bits (97), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 948  QEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQ 1003
            ++P+  +Q V +       + L+    V FN   LL + FT  S  Y N         N+
Sbjct: 5    KKPNYQKQSVVKESAKAAFEQLQKELNVSFNKPALLYQAFTHSS--YVNEHRRKQFTDNE 62

Query: 1004 RLEFLGDTVLQLITSDYLY 1022
            RLEFLGD VL+L  S YLY
Sbjct: 63   RLEFLGDAVLELSVSHYLY 81


>gi|425736816|ref|ZP_18855092.1| ribonuclease III [Staphylococcus massiliensis S46]
 gi|425483288|gb|EKU50440.1| ribonuclease III [Staphylococcus massiliensis S46]
          Length = 240

 Score = 76.3 bits (186), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 11/131 (8%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           ++HNERLEFLGDAV+E   S +L+  +PD+ EG L   RA+IV    L   A +  L   
Sbjct: 52  LSHNERLEFLGDAVLELTVSRYLYDKYPDLPEGNLTKMRASIVCEPSLVIFANKFDLNQL 111

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK----------- 928
           +L   G +          +++ FEA +GAL+LD G++        +++            
Sbjct: 112 ILLGKGEEKTGGRTRPSLVSDAFEAFVGALYLDQGLETVRTFSEKIIFPIVETEELVGVI 171

Query: 929 DNEVRFKQWMY 939
           D + RF+++M+
Sbjct: 172 DFKTRFQEFMH 182


>gi|390949031|ref|YP_006412790.1| ribonuclease III [Thiocystis violascens DSM 198]
 gi|390425600|gb|AFL72665.1| ribonuclease III [Thiocystis violascens DSM 198]
          Length = 224

 Score = 76.3 bits (186), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 22/166 (13%)

Query: 812 RKVATESNITH-------NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQN 864
           R+   E  +TH       NERLEFLGDA++ F+ +  L+  FP+ +EG L+  RA++V+ 
Sbjct: 18  REDLLEQGLTHRSAGAFNNERLEFLGDALIGFMIAEALWERFPEADEGTLSRMRASLVKR 77

Query: 865 QHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS 924
           + LA LA+ + L D++    G            +A+  EA++GA++LD G  V   V   
Sbjct: 78  ESLAGLARGLRLGDYLRLGAGELRTGGHARDSILADALEAVLGAVYLDAGFAVTQTVVMG 137

Query: 925 VLY------------KDNEVRFKQWMYYPQHPLQE---QEPDGDRQ 955
           +              KD + R ++W+   + PL +    E  GD+ 
Sbjct: 138 LFAERLDDTSAAQSGKDPKTRLQEWLQSRKWPLPDYVVTEIGGDQH 183


>gi|302670933|ref|YP_003830893.1| ribonuclease III Rnc [Butyrivibrio proteoclasticus B316]
 gi|302395406|gb|ADL34311.1| ribonuclease III Rnc [Butyrivibrio proteoclasticus B316]
          Length = 230

 Score = 76.3 bits (186), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/92 (41%), Positives = 60/92 (65%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           ERLEFLGDA++E ++S +LF  +PD +EG ++  RA++V    LA  A+ I L+ ++   
Sbjct: 46  ERLEFLGDAILEMVSSEYLFKKYPDKKEGEMSKIRASLVCEPALAFCAEHIELKKYIQLG 105

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGI 915
            G +L      +  +A+  EA++GALFLDGG+
Sbjct: 106 KGEELTGGRNKESIIADVMEAVIGALFLDGGL 137


>gi|325577735|ref|ZP_08148010.1| ribonuclease III [Haemophilus parainfluenzae ATCC 33392]
 gi|325160480|gb|EGC72606.1| ribonuclease III [Haemophilus parainfluenzae ATCC 33392]
          Length = 227

 Score = 76.3 bits (186), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 58/103 (56%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ ++ +  L+H FP   EG L+  RA +V+   LA LA+   L D+M 
Sbjct: 34  HNERLEFLGDSILNYVIADALYHQFPRCNEGELSRMRATLVREPTLAMLARNFELGDYMS 93

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS 924
              G         +  +A+C EA++GA+ LD   D A  +  S
Sbjct: 94  LGSGELKSGGFRRESILADCVEAVIGAMALDSSFDKAADIVRS 136


>gi|359453126|ref|ZP_09242450.1| ribonuclease III [Pseudoalteromonas sp. BSi20495]
 gi|414071304|ref|ZP_11407275.1| ribonuclease III [Pseudoalteromonas sp. Bsw20308]
 gi|358049757|dbj|GAA78699.1| ribonuclease III [Pseudoalteromonas sp. BSi20495]
 gi|410806268|gb|EKS12263.1| ribonuclease III [Pseudoalteromonas sp. Bsw20308]
          Length = 225

 Score = 76.3 bits (186), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 54/95 (56%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ F+ +  L+  FP   EG L+  R+ +V+ Q LA      GL D++ 
Sbjct: 35  HNERLEFLGDSILSFVIANALYAKFPKAREGDLSRMRSTLVRGQTLAEFGLEFGLGDYLR 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
              G         +  +A+  EA++GA FLD GID
Sbjct: 95  LGPGELKSGGFRRESTLADAVEAIIGAAFLDSGID 129


>gi|71903092|ref|YP_279895.1| ribonuclease III [Streptococcus pyogenes MGAS6180]
 gi|90101651|sp|Q48UR6.1|RNC_STRPM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71802187|gb|AAX71540.1| ribonuclease III [Streptococcus pyogenes MGAS6180]
          Length = 230

 Score = 76.3 bits (186), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/108 (35%), Positives = 60/108 (55%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           N++HNERLEFLGDAV++ I S +LF  +P   EG ++  R+ IV+ + LA  ++    + 
Sbjct: 39  NVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDA 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           ++    G +          + + FEA +GAL LD GID   +    V+
Sbjct: 99  YIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVM 146



 Score = 48.5 bits (114), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 7/65 (10%)

Query: 963  LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 1017
            +KQL+ L  +S  + FN + LL   FT  S  Y N    L +  N+RLEFLGD VLQLI 
Sbjct: 1    MKQLEELLSTSFDIQFNDLTLLETAFTHTS--YANEHRLLNVSHNERLEFLGDAVLQLII 58

Query: 1018 SDYLY 1022
            S+YL+
Sbjct: 59   SEYLF 63


>gi|375362237|ref|YP_005130276.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum CAU
           B946]
 gi|421731737|ref|ZP_16170860.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum M27]
 gi|451347036|ref|YP_007445667.1| ribonuclease III [Bacillus amyloliquefaciens IT-45]
 gi|371568231|emb|CCF05081.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum CAU
           B946]
 gi|407073950|gb|EKE46940.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum M27]
 gi|449850794|gb|AGF27786.1| ribonuclease III [Bacillus amyloliquefaciens IT-45]
          Length = 249

 Score = 76.3 bits (186), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 48/126 (38%), Positives = 66/126 (52%), Gaps = 2/126 (1%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S  LF  +P + EG L   RAAIV    L  LA  +   D +L 
Sbjct: 58  NERLEFLGDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLL 117

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    +    +A+ FEA +GAL+LD G++   Q     ++ K N+  F   M + 
Sbjct: 118 GKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEPVQQFLKEYVFPKINDGAFSHVMDFK 177

Query: 942 QHPLQE 947
              LQE
Sbjct: 178 SQ-LQE 182


>gi|222151066|ref|YP_002560220.1| ribonuclease III [Macrococcus caseolyticus JCSC5402]
 gi|222120189|dbj|BAH17524.1| ribonuclease III [Macrococcus caseolyticus JCSC5402]
          Length = 242

 Score = 76.3 bits (186), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/105 (40%), Positives = 59/105 (56%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E + S +L+    D+ EG L   RAAIV    L   AK +  +  +L 
Sbjct: 53  NERLEFLGDAVLELMVSQYLYQQHRDLPEGRLTKLRAAIVCEPSLVTFAKMLKFDQLILL 112

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
             G +          +A+ FEA +GAL+LD G DV  + F+S ++
Sbjct: 113 GKGEEKTGGRTRPSLIADVFEAFVGALYLDQGHDVTKRFFNSYIF 157


>gi|359433017|ref|ZP_09223362.1| ribonuclease III [Pseudoalteromonas sp. BSi20652]
 gi|357920326|dbj|GAA59611.1| ribonuclease III [Pseudoalteromonas sp. BSi20652]
          Length = 200

 Score = 76.3 bits (186), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 54/95 (56%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ F+ +  L+  FP   EG L+  R+ +V+ Q LA      GL D++ 
Sbjct: 10  HNERLEFLGDSILSFVIANALYAKFPKAREGDLSRMRSTLVRGQTLAEFGLEFGLGDYLR 69

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
              G         +  +A+  EA++GA FLD GID
Sbjct: 70  LGPGELKSGGFRRESTLADAVEAIIGAAFLDSGID 104


>gi|408483604|ref|ZP_11189823.1| ribonuclease III [Pseudomonas sp. R81]
          Length = 229

 Score = 76.3 bits (186), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/110 (36%), Positives = 64/110 (58%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDA++ F+    LF  FP   EG L+  RA +V+ + LA LA+  GL +++ 
Sbjct: 35  NNERLEFLGDAILNFVAGEALFERFPQAREGQLSRLRARLVKGETLAVLARGFGLGEYLR 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
              G         +  +A+  EAL+GA++LD G++ A +  ++ L  + E
Sbjct: 95  LGSGELKSGGFRRESILADALEALIGAIYLDAGMEAAKERVTAWLTSEIE 144


>gi|269957060|ref|YP_003326849.1| ribonuclease III [Xylanimonas cellulosilytica DSM 15894]
 gi|269305741|gb|ACZ31291.1| ribonuclease III [Xylanimonas cellulosilytica DSM 15894]
          Length = 239

 Score = 76.3 bits (186), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/111 (36%), Positives = 64/111 (57%), Gaps = 1/111 (0%)

Query: 812 RKVATESN-ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
           R  A E+  I HNERLEFLGD+V+  + +  LF   PD+ EG LA  RAA V  + LA +
Sbjct: 35  RSFAHEAGGIPHNERLEFLGDSVLGVVVTEALFRRHPDVSEGELAKMRAATVSQRSLAAV 94

Query: 871 AKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           A+R+ L  ++L   G       +    +++  EAL+GA ++  G++ A ++
Sbjct: 95  ARRLELGSYVLLGKGERRTRGFDKDSILSDTVEALIGATYISHGLEAAREL 145


>gi|238753924|ref|ZP_04615284.1| Ribonuclease 3 [Yersinia ruckeri ATCC 29473]
 gi|238707912|gb|EEQ00270.1| Ribonuclease 3 [Yersinia ruckeri ATCC 29473]
          Length = 226

 Score = 76.3 bits (186), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 59/101 (58%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ F+ +  L+H FP ++EG ++  RA +V+   LA +A+   L + + 
Sbjct: 36  HNERLEFLGDSILSFVIANELYHRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLR 95

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
              G         +  +A+  EAL+G +FLD GI   +++ 
Sbjct: 96  LGPGELKSGGFRRESILADTVEALIGGVFLDSGIQTVERLI 136


>gi|383785170|ref|YP_005469740.1| ribonuclease III [Leptospirillum ferrooxidans C2-3]
 gi|383084083|dbj|BAM07610.1| ribonuclease III [Leptospirillum ferrooxidans C2-3]
          Length = 241

 Score = 76.3 bits (186), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 78/188 (41%), Gaps = 51/188 (27%)

Query: 731 HRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRI 790
            RSLN LE  + Y+F    LLQ ALTH SY      +P   R S                
Sbjct: 8   QRSLNELESALNYRFGKIDLLQDALTHKSYM----ADPRQGRQS---------------- 47

Query: 791 HFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIE 850
                                          +NERLEFLGD V+  + + HL    PD  
Sbjct: 48  -------------------------------NNERLEFLGDTVLGLVIAEHLMSTHPDYP 76

Query: 851 EGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALF 910
           EG L+ ++  IV    LA +++ + +  ++    G +L    E    +A+  EA++ A++
Sbjct: 77  EGTLSKFKGRIVSEPSLAEISRTLDIGSYLRVGKGEELTQGREKSSILADALEAVIAAIY 136

Query: 911 LDGGIDVA 918
           LDGG+  A
Sbjct: 137 LDGGLAAA 144


>gi|261868615|ref|YP_003256537.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413947|gb|ACX83318.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 226

 Score = 76.3 bits (186), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 16/146 (10%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDA++       LFH FP   EG L+  RA +V+   LA LA+   L D++L
Sbjct: 36  HNERLEFLGDAILNLTIGEALFHQFPKCNEGELSRMRATLVREPTLALLARDFKLGDYIL 95

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYP 941
              G         +  +A+C EA++GA+ LD  +  A Q+              QW    
Sbjct: 96  LGQGELKSGGFRRESILADCVEAIIGAISLDSSLTNATQIVC------------QWY--- 140

Query: 942 QHPLQEQEPDGDRQWVEQSPLLKQLQ 967
           Q+ L+E +P GD Q   ++ L + LQ
Sbjct: 141 QNLLKEIKP-GDNQKDAKTRLQEYLQ 165


>gi|451823164|ref|YP_007459438.1| ribonuclease III [Candidatus Kinetoplastibacterium desouzaii
           TCC079E]
 gi|451775964|gb|AGF47005.1| ribonuclease III [Candidatus Kinetoplastibacterium desouzaii
           TCC079E]
          Length = 230

 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 57/100 (57%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++    +I LF  F  I+EGGL+  RA++VQ   LA +A ++ +  ++ 
Sbjct: 33  HNERLEFLGDSILNSSITIILFERFSHIDEGGLSRLRASLVQQNSLAKIAIKLDISRYLR 92

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
              G            +A+C EA+ GA+F D G DV   +
Sbjct: 93  LGDGEIKSGGSNRPSILADCIEAIFGAIFQDSGFDVCKNI 132


>gi|165975962|ref|YP_001651555.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|238687533|sp|B0BUA6.1|RNC_ACTPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|165876063|gb|ABY69111.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 223

 Score = 76.3 bits (186), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 38/97 (39%), Positives = 58/97 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ F     LF  FP   EG L+  RA +V+ Q LA LA++ GL ++M 
Sbjct: 33  NNERLEFLGDSILNFAIGKALFEKFPKANEGELSRMRATLVREQTLAILARKFGLGEYMK 92

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
              G         +  +++C EA++ A++LD G+D A
Sbjct: 93  LGAGELKSGGYRRESILSDCVEAIIAAIYLDAGMDKA 129


>gi|404476274|ref|YP_006707705.1| ribonuclease III [Brachyspira pilosicoli B2904]
 gi|404437763|gb|AFR70957.1| ribonuclease III [Brachyspira pilosicoli B2904]
          Length = 189

 Score = 76.3 bits (186), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 73/119 (61%), Gaps = 2/119 (1%)

Query: 812 RKVATES-NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
           R  A E+ N+ +N+RLEFLGD+V+  I S H++  + +++EG L+  +A +V    LA++
Sbjct: 30  RTYANENGNMKYNQRLEFLGDSVLSLIISEHIYKEYNNVKEGKLSKIKAYLVSQNTLANI 89

Query: 871 AKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 929
           ++++ L DF+L   G +     E  + + + FEA++GA++LD  ++     F   +YKD
Sbjct: 90  SRKLKLGDFLLLGKGEEASGGRERDNMLEDLFEAIIGAIYLDSNLENTKN-FVMRVYKD 147



 Score = 42.0 bits (97), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 962  LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 1021
            LL   + L+YS    F +   L    T R+    N  +  NQRLEFLGD+VL LI S+++
Sbjct: 6    LLDCEKVLQYS----FKNKNYLLEAITHRTYANENGNMKYNQRLEFLGDSVLSLIISEHI 61

Query: 1022 Y 1022
            Y
Sbjct: 62   Y 62


>gi|323499981|ref|ZP_08104937.1| ribonuclease III [Vibrio sinaloensis DSM 21326]
 gi|323314947|gb|EGA68002.1| ribonuclease III [Vibrio sinaloensis DSM 21326]
          Length = 225

 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANGKHNERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGNTLAELGREFELG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSV 925
           D +    G            +A+  EA++GA++LD  I+              D +   V
Sbjct: 91  DHLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEEVRRIILSWYKTRLDAIKPGV 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|260775208|ref|ZP_05884106.1| ribonuclease III [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608909|gb|EEX35071.1| ribonuclease III [Vibrio coralliilyticus ATCC BAA-450]
          Length = 225

 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 12/136 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ F+ +  L+H FP + EG ++  RA +V+   LA L +   L D + 
Sbjct: 35  HNERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGNTLAELGREFELGDHLK 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS------------VLYKD 929
              G            +A+  EA++GA++LD  I+V   +  S            V  KD
Sbjct: 95  LGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEVVRGIILSWYKQRLEAIQPGVSQKD 154

Query: 930 NEVRFKQWMYYPQHPL 945
            + R ++++   + PL
Sbjct: 155 PKTRLQEFLQGRRKPL 170


>gi|259485853|tpe|CBF83228.1| TPA: Dicer-like protein 2 [Includes Endoribonuclease dcl2(EC
            3.1.26.-);ATP-dependent helicase dcl2(EC 3.6.1.-)]
            [Source:UniProtKB/Swiss-Prot;Acc:P0C5H7] [Aspergillus
            nidulans FGSC A4]
          Length = 1269

 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 109/254 (42%), Gaps = 46/254 (18%)

Query: 788  RRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFP 847
            R I FQ+ R        ++++ +   +A     T  +R EF GD+V++F  +  LF+  P
Sbjct: 723  RDIQFQDLR--------HVITAITMPLAQAP--TDYQRYEFFGDSVLKFTVAASLFYNNP 772

Query: 848  DIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM------------------LYAHGSDLC 889
            +  EG L     A+VQN  L   A   GL+ ++                  LYA  S   
Sbjct: 773  NWHEGYLTETLHALVQNARLTRAALDQGLDAYIISNRFTPRKWSAPLISEKLYASASTRS 832

Query: 890  HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQH--PLQE 947
               ++   +A+  EAL+GA ++DGG+  A             VRF   +  P+   P  E
Sbjct: 833  MSAKV---LADVVEALIGAAYIDGGLHKAQSCI---------VRFLPEIELPETKLPRPE 880

Query: 948  QEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEF 1007
              P        + P L Q + LE   G  F    LL    T  S  Y + ++ S QRLEF
Sbjct: 881  SMPMSKDH---KKPHLIQQENLENHIGYTFKDKTLLMEALTHPSCPY-DTSIQSYQRLEF 936

Query: 1008 LGDTVLQLITSDYL 1021
            LGD VL ++  D +
Sbjct: 937  LGDAVLDMLIVDLI 950


>gi|197303071|ref|ZP_03168119.1| hypothetical protein RUMLAC_01798 [Ruminococcus lactaris ATCC
           29176]
 gi|197297926|gb|EDY32478.1| ribonuclease III [Ruminococcus lactaris ATCC 29176]
          Length = 229

 Score = 76.3 bits (186), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 64/216 (29%), Positives = 88/216 (40%), Gaps = 53/216 (24%)

Query: 732 RSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIH 791
           + L  LE +I Y F+N  LL+ A+ H SY     TN  H       C             
Sbjct: 3   KRLKELEKKIGYTFENHKLLERAMMHSSY-----TNEKHLEKY--RC------------- 42

Query: 792 FQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEE 851
                                          NERLEFLGDAV+E I+S +LF   P + E
Sbjct: 43  -------------------------------NERLEFLGDAVLELISSEYLFGELPRVSE 71

Query: 852 GGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFL 911
           G L   RA++V    LA  A+ I L  ++L   G +           ++  EAL+GA++L
Sbjct: 72  GELTKTRASMVCEPSLAMCARDIDLGSYLLLGKGEEATGGRMRDSITSDAMEALIGAIYL 131

Query: 912 DGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
           DGG   A +     +  D E   K+  Y  +  LQE
Sbjct: 132 DGGFTSAKEFIHRFILTDLED--KKLFYDSKTILQE 165



 Score = 44.7 bits (104), Expect = 0.28,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 964  KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT----LGSNQRLEFLGDTVLQLITSD 1019
            K+L+ LE   G  F + +LL R     S  YTN         N+RLEFLGD VL+LI+S+
Sbjct: 3    KRLKELEKKIGYTFENHKLLERAMMHSS--YTNEKHLEKYRCNERLEFLGDAVLELISSE 60

Query: 1020 YLY 1022
            YL+
Sbjct: 61   YLF 63


>gi|115351064|ref|YP_772903.1| ribonuclease III [Burkholderia ambifaria AMMD]
 gi|115281052|gb|ABI86569.1| RNAse III [Burkholderia ambifaria AMMD]
          Length = 425

 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + +
Sbjct: 30  SATHNERLEFLGDSVLNCAVAALLFQRFSKLDEGDLSRVRANLVKQQSLYEIAQALNISE 89

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 90  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 133


>gi|365966370|ref|YP_004947932.1| ribonuclease III [Aggregatibacter actinomycetemcomitans ANH9381]
 gi|387121634|ref|YP_006287517.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|415756954|ref|ZP_11481208.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D17P-3]
 gi|416045384|ref|ZP_11575353.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype d
           str. I63B]
 gi|416056660|ref|ZP_11579924.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype e
           str. SCC393]
 gi|416073362|ref|ZP_11584205.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype b
           str. SCC1398]
 gi|416084711|ref|ZP_11587076.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype b
           str. I23C]
 gi|416108315|ref|ZP_11590990.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype c
           str. SCC2302]
 gi|429734829|ref|ZP_19268829.1| ribonuclease III [Aggregatibacter actinomycetemcomitans Y4]
 gi|444337949|ref|ZP_21151862.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype b
           str. SCC4092]
 gi|444346744|ref|ZP_21154707.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype c
           str. AAS4A]
 gi|347995373|gb|EGY36557.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype d
           str. I63B]
 gi|348001853|gb|EGY42581.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype e
           str. SCC393]
 gi|348004406|gb|EGY44916.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype c
           str. SCC2302]
 gi|348007316|gb|EGY47635.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype b
           str. SCC1398]
 gi|348010324|gb|EGY50379.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype b
           str. I23C]
 gi|348655633|gb|EGY71078.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D17P-3]
 gi|365745283|gb|AEW76188.1| ribonuclease III [Aggregatibacter actinomycetemcomitans ANH9381]
 gi|385876126|gb|AFI87685.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|429151099|gb|EKX93983.1| ribonuclease III [Aggregatibacter actinomycetemcomitans Y4]
 gi|443541300|gb|ELT51742.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype c
           str. AAS4A]
 gi|443545955|gb|ELT55680.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype b
           str. SCC4092]
          Length = 226

 Score = 76.3 bits (186), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 16/146 (10%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDA++       LFH FP   EG L+  RA +V+   LA LA+   L D++L
Sbjct: 36  HNERLEFLGDAILNLTIGEALFHQFPKCNEGELSRMRATLVREPTLALLARDFKLGDYIL 95

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYP 941
              G         +  +A+C EA++GA+ LD  +  A Q+              QW    
Sbjct: 96  LGQGELKSGGFRRESILADCVEAIIGAISLDSNLTNATQIVC------------QWY--- 140

Query: 942 QHPLQEQEPDGDRQWVEQSPLLKQLQ 967
           Q+ L+E +P GD Q   ++ L + LQ
Sbjct: 141 QNLLKEIKP-GDNQKDAKTRLQEYLQ 165


>gi|222152723|ref|YP_002561900.1| ribonuclease III [Streptococcus uberis 0140J]
 gi|254807903|sp|B9DRH1.1|RNC_STRU0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|222113536|emb|CAR41327.1| ribonuclease III [Streptococcus uberis 0140J]
          Length = 230

 Score = 76.3 bits (186), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/108 (36%), Positives = 61/108 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDAV++ I S +LF  +P   EG L+  R+ IV+ + LA  ++    E 
Sbjct: 39  NISHNERLEFLGDAVLQLIISEYLFKKYPHKAEGELSKQRSMIVREESLASFSRHCAFEP 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           ++    G +          + + FEA +GAL LD G++   +  + V+
Sbjct: 99  YIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGVEEVRRFLNQVM 146



 Score = 43.5 bits (101), Expect = 0.68,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 37/65 (56%), Gaps = 7/65 (10%)

Query: 963  LKQLQYLEYSSGVI-FNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 1017
            +K L+ L  SS  I F    LL   FT  S  Y N    L +  N+RLEFLGD VLQLI 
Sbjct: 1    MKNLEALLKSSFAIEFEDKTLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLII 58

Query: 1018 SDYLY 1022
            S+YL+
Sbjct: 59   SEYLF 63


>gi|54297783|ref|YP_124152.1| ribonuclease III [Legionella pneumophila str. Paris]
 gi|148359410|ref|YP_001250617.1| ribonuclease III [Legionella pneumophila str. Corby]
 gi|296107456|ref|YP_003619157.1| ribonuclease III [Legionella pneumophila 2300/99 Alcoy]
 gi|397667593|ref|YP_006509130.1| RNase III [Legionella pneumophila subsp. pneumophila]
 gi|81370372|sp|Q5X446.1|RNC_LEGPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043325|sp|A5ID21.1|RNC_LEGPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|53751568|emb|CAH12986.1| hypothetical protein lpp1834 [Legionella pneumophila str. Paris]
 gi|148281183|gb|ABQ55271.1| ribonuclease III [Legionella pneumophila str. Corby]
 gi|295649358|gb|ADG25205.1| ribonuclease III [Legionella pneumophila 2300/99 Alcoy]
 gi|395131004|emb|CCD09253.1| RNase III [Legionella pneumophila subsp. pneumophila]
          Length = 224

 Score = 76.3 bits (186), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 53/195 (27%), Positives = 98/195 (50%), Gaps = 18/195 (9%)

Query: 798 RGINTLINIMSKLGRKVATESNITHN-ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
           R +N   N ++ L + +   S  + N ER EFLGD+++ F+ +  LF+ FP   EG L+ 
Sbjct: 10  RRLNYHFNNIAYLKQALTHCSAGSDNYERFEFLGDSILSFVIANELFNRFPLHSEGQLSR 69

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            R+ +V+ + LA +A+ IGL D++    G            +A+  EA++ A++LDGG+ 
Sbjct: 70  LRSFLVKGEMLAEIAREIGLGDYLFLGQGELRSGGFRRTSILADALEAILAAIYLDGGMT 129

Query: 917 VADQV----FSSVL--------YKDNEVRFKQWMY-----YPQHPLQEQEPDGDRQWVEQ 959
            A Q+    +SS L         KD + + ++++       P++ L + E D   Q    
Sbjct: 130 AAKQIILMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTKIEGDEHAQIFHV 189

Query: 960 SPLLKQLQYLEYSSG 974
           +  ++ +  + Y +G
Sbjct: 190 TCTIEGVSQVAYGTG 204


>gi|412341945|ref|YP_006970700.1| ribonuclease III [Bordetella bronchiseptica 253]
 gi|408771779|emb|CCJ56583.1| ribonuclease III [Bordetella bronchiseptica 253]
          Length = 256

 Score = 76.3 bits (186), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 7/120 (5%)

Query: 809 KLGRKVATESNITH-------NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAI 861
           + G K   E  +TH       NERLEFLGD+V+ F+ +  LF  +  ++EG L+  RA +
Sbjct: 16  RFGDKALLEQALTHRSHGARHNERLEFLGDSVLNFVVAAMLFERYGKLDEGDLSRLRANL 75

Query: 862 VQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           V+   LA +A+R+ L  ++    G            +A+  EAL GA+FLD G + A +V
Sbjct: 76  VKQASLADIAQRLDLSQYLRLGEGELKSGGFRRPSILADTVEALFGAVFLDAGFEAARRV 135


>gi|421343846|ref|ZP_15794249.1| ribonuclease III [Vibrio cholerae HC-43B1]
 gi|395939926|gb|EJH50607.1| ribonuclease III [Vibrio cholerae HC-43B1]
          Length = 225

 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+  FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANGKHNERLEFLGDSILSFVIADELYRRFPKVNEGDMSRMRATLVRGNTLAELGREFDLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSV 925
           D++    G            +A+  EA++GAL+LD  ++ A            +++    
Sbjct: 91  DYLKLGPGELKSGGFRRDSILADAVEAIIGALYLDSDLETARRIVLEWYQCRLEEIKPGA 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|223043742|ref|ZP_03613785.1| ribonuclease III [Staphylococcus capitis SK14]
 gi|417907072|ref|ZP_12550848.1| ribonuclease III [Staphylococcus capitis VCU116]
 gi|222442839|gb|EEE48941.1| ribonuclease III [Staphylococcus capitis SK14]
 gi|341596703|gb|EGS39294.1| ribonuclease III [Staphylococcus capitis VCU116]
          Length = 245

 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 58/108 (53%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   S +LF   P + EG L   RA IV    L   A +I L + 
Sbjct: 52  LDHNERLEFLGDAVLELTVSRYLFDKHPHLPEGNLTKMRATIVCEPSLVIFANKIDLNEL 111

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          +++ FEA +GAL+LD G+D   +    V++
Sbjct: 112 ILLGKGEEKTGGRTRPSLISDAFEAFVGALYLDQGLDTVWKFAEKVIF 159


>gi|40063418|gb|AAR38229.1| ribonuclease III [uncultured marine bacterium 580]
          Length = 231

 Score = 76.3 bits (186), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 76/140 (54%), Gaps = 12/140 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ F+ +  LF  F D++EG L+  R+ +V+ + L+ L   + + DF+ 
Sbjct: 36  NNERLEFLGDSILNFVVADLLFKKFNDLDEGDLSRLRSQLVKEEPLSKLGNELKIGDFLN 95

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGI------------DVADQVFSSVLYKD 929
              G            +A+ FEAL+GA+F+DGG+            D+ +++    +YKD
Sbjct: 96  LGVGELKSSGWRRPSILADAFEALIGAIFIDGGMKSAYKFIEDSYADLIEKINPKEIYKD 155

Query: 930 NEVRFKQWMYYPQHPLQEQE 949
            +   ++++   + PL   E
Sbjct: 156 PKTILQEFLQAQKVPLPSYE 175



 Score = 42.0 bits (97), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 964  KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            K+L+ LE S    F   +LLA   T RS    N     N+RLEFLGD++L  + +D L+
Sbjct: 4    KELKILEKSIKYKFKDDKLLALAMTHRSHSGMN-----NERLEFLGDSILNFVVADLLF 57


>gi|409358245|ref|ZP_11236608.1| ribonuclease III [Dietzia alimentaria 72]
          Length = 232

 Score = 76.3 bits (186), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 7/112 (6%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E + + +L+  +PD  EG LA  RA++V    LA +A+ +G  D 
Sbjct: 37  LPHNERLEFLGDAVLELVVTEYLYSAYPDRPEGDLAKIRASLVNTYVLADIARELG--DD 94

Query: 880 MLYAH-----GSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
            L AH     G +L    +    +A+  EA+ GA++L  G++ A +V  +++
Sbjct: 95  GLGAHLRLGRGEELTGGNDKHSILADTLEAVFGAVYLTHGLETARRVIEAII 146



 Score = 46.2 bits (108), Expect = 0.085,   Method: Composition-based stats.
 Identities = 21/43 (48%), Positives = 28/43 (65%)

Query: 980  IRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            I L  +  T RS  Y +  L  N+RLEFLGD VL+L+ ++YLY
Sbjct: 18   IELATQALTHRSYAYEHGGLPHNERLEFLGDAVLELVVTEYLY 60


>gi|333979683|ref|YP_004517628.1| ribonuclease 3 [Desulfotomaculum kuznetsovii DSM 6115]
 gi|333823164|gb|AEG15827.1| Ribonuclease 3 [Desulfotomaculum kuznetsovii DSM 6115]
          Length = 243

 Score = 76.3 bits (186), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/100 (40%), Positives = 60/100 (60%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +N+RLEFLGDAV+E + S +L+  +P   EG L   RAAIV    LA  A+ + L   + 
Sbjct: 45  NNQRLEFLGDAVLELVVSDYLYRTYPGHTEGELTRLRAAIVCEPSLARTARELDLGSCLY 104

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
              G +     E    +A+ FEAL+GA++LD G+++A +V
Sbjct: 105 MGRGEERSGGRERPSILADAFEALLGAVYLDQGLEMARKV 144



 Score = 44.7 bits (104), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 964  KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG--SNQRLEFLGDTVLQLITSDYL 1021
            +++  L+   G  + +  LL    T  S  Y  +  G  +NQRLEFLGD VL+L+ SDYL
Sbjct: 6    EKISILKEKLGFRWQNEDLLCLALTHSSYAYEKIFRGQENNQRLEFLGDAVLELVVSDYL 65

Query: 1022 Y 1022
            Y
Sbjct: 66   Y 66


>gi|260913782|ref|ZP_05920258.1| ribonuclease III [Pasteurella dagmatis ATCC 43325]
 gi|260632321|gb|EEX50496.1| ribonuclease III [Pasteurella dagmatis ATCC 43325]
          Length = 225

 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           ++I HNERLEFLGDA++    +  L+H FP   EG L+  RA +V+   LA LA++  L 
Sbjct: 31  ASINHNERLEFLGDAILNLTIAEALYHQFPKCNEGELSRMRATLVREPTLAILARKFELG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSVL------- 926
           D++    G         +  +A+C EA++GA+ LD  +    ++    + S+L       
Sbjct: 91  DYLSLGPGELKSGGFRRESILADCVEAIIGAISLDSNLPKTSKIVCNWYKSLLEEIKPGD 150

Query: 927 -YKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 NQKDPKTRLQEYLQGKRLPL 170



 Score = 42.7 bits (99), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 964  KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            K L+ L+   G  FN + LL +  T RS      ++  N+RLEFLGD +L L  ++ LY
Sbjct: 3    KNLERLQRKLGYSFNQVSLLEQALTHRSA-----SINHNERLEFLGDAILNLTIAEALY 56


>gi|312881718|ref|ZP_07741495.1| ribonuclease III [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370608|gb|EFP98083.1| ribonuclease III [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 225

 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 59/105 (56%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+  FP I EG ++  RA +V+ + LA L +   L 
Sbjct: 31  ANSKHNERLEFLGDSILSFVIADDLYQRFPQINEGDMSRMRATLVRGKTLAELGREFQLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
           D++    G            +A+  EA++GA+++D  I+V   + 
Sbjct: 91  DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYMDSNIEVVRGII 135


>gi|167837348|ref|ZP_02464231.1| ribonuclease III [Burkholderia thailandensis MSMB43]
          Length = 452

 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D
Sbjct: 25  SATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISD 84

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+F+DGG + A  V 
Sbjct: 85  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFVDGGFEAAQGVI 128


>gi|291542641|emb|CBL15751.1| RNAse III [Ruminococcus bromii L2-63]
          Length = 225

 Score = 76.3 bits (186), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 51/184 (27%)

Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
           L+ RI Y F+N  LL  ALTH SY      N   A++                       
Sbjct: 4   LQKRIGYTFKNTDLLTEALTHSSY-----ANEHKAKH----------------------- 35

Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
                                  I +NERLEFLGDAV+  + S ++F   P++ EG L  
Sbjct: 36  -----------------------IKYNERLEFLGDAVLSIVVSDYIFKHCPELPEGELTK 72

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            RA++V  + L   AK+I L  +++ + G       E    +++ FEAL+ A+++DGGID
Sbjct: 73  LRASLVCEKTLFEFAKQIELGKYLVLSKGERNNGGAERPSILSDAFEALIAAIYIDGGID 132

Query: 917 VADQ 920
            A +
Sbjct: 133 PASK 136


>gi|300869947|ref|YP_003784818.1| ribonuclease III [Brachyspira pilosicoli 95/1000]
 gi|300687646|gb|ADK30317.1| ribonuclease III [Brachyspira pilosicoli 95/1000]
          Length = 229

 Score = 76.3 bits (186), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 73/119 (61%), Gaps = 2/119 (1%)

Query: 812 RKVATES-NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
           R  A E+ N+ +N+RLEFLGD+V+  I S H++  + +++EG L+  +A +V    LA++
Sbjct: 30  RTFANENGNMKYNQRLEFLGDSVLSLIISEHIYKEYNNVKEGKLSKIKAYLVSQNTLANI 89

Query: 871 AKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 929
           ++++ L DF+L   G +     E  + + + FEA++GA++LD  ++     F   +YKD
Sbjct: 90  SRKLKLGDFLLLGKGEEASGGRERDNMLEDLFEAIIGAIYLDSNLENTKN-FVMRVYKD 147



 Score = 42.0 bits (97), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 962  LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 1021
            LL   + L+YS    F +   L    T R+    N  +  NQRLEFLGD+VL LI S+++
Sbjct: 6    LLDCEKVLQYS----FKNKNYLLEAITHRTFANENGNMKYNQRLEFLGDSVLSLIISEHI 61

Query: 1022 Y 1022
            Y
Sbjct: 62   Y 62


>gi|307256562|ref|ZP_07538343.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306864972|gb|EFM96874.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 243

 Score = 76.3 bits (186), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/97 (39%), Positives = 58/97 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ F     LF  FP   EG L+  RA +V+ Q LA LA++ GL ++M 
Sbjct: 53  NNERLEFLGDSILNFAIGKALFEKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMK 112

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
              G         +  +++C EA++ A++LD G+D A
Sbjct: 113 LGAGELKSGGYRRESILSDCVEAIIAAIYLDAGMDKA 149


>gi|311742943|ref|ZP_07716751.1| ribonuclease III [Aeromicrobium marinum DSM 15272]
 gi|311313623|gb|EFQ83532.1| ribonuclease III [Aeromicrobium marinum DSM 15272]
          Length = 232

 Score = 76.3 bits (186), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 1/116 (0%)

Query: 812 RKVATES-NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
           R  A E+  I +NERLEFLGD+V+  + +  LF   PD+ EG LA  RAA+V  + LA +
Sbjct: 25  RSYAYENGQIPNNERLEFLGDSVLGLVVTDSLFRAHPDLPEGQLAKLRAAVVSAKALAVV 84

Query: 871 AKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           A+ +G+ D +    G +     +    +++  EA++GA+FL  GI+ A +V   V 
Sbjct: 85  ARTLGIGDVVRLGRGEETTGGRDKASILSDTVEAVIGAVFLQFGIERAAEVVHRVF 140



 Score = 43.9 bits (102), Expect = 0.48,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 982  LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            LL    T RS  Y N  + +N+RLEFLGD+VL L+ +D L+
Sbjct: 17   LLRHALTHRSYAYENGQIPNNERLEFLGDSVLGLVVTDSLF 57


>gi|72161055|ref|YP_288712.1| ribonuclease III [Thermobifida fusca YX]
 gi|90101652|sp|Q47S78.1|RNC_THEFY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71914787|gb|AAZ54689.1| RNAse III [Thermobifida fusca YX]
          Length = 240

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 61/99 (61%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGD+V+  + +  L+   PD+ EG LA  RAA+V  + LA +A+ +G+  ++  
Sbjct: 45  NERLEFLGDSVLGLVVTDTLYRTHPDLSEGQLAKLRAAVVNMRALADVARELGIGRYVRL 104

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
             G +     +    +A+  EAL+GA++LD G+D A ++
Sbjct: 105 GRGEEATGGRDKSSILADTLEALIGAVYLDRGLDEASEL 143



 Score = 48.1 bits (113), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 28/41 (68%)

Query: 982  LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            +L R  T RS  Y N  L +N+RLEFLGD+VL L+ +D LY
Sbjct: 25   ILTRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLY 65


>gi|254785337|ref|YP_003072766.1| ribonuclease III [Teredinibacter turnerae T7901]
 gi|237684548|gb|ACR11812.1| ribonuclease III [Teredinibacter turnerae T7901]
          Length = 229

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 16/138 (11%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ F+ + +L+  FP   EG L+  RA++V+ + LA LAK   L +F+ 
Sbjct: 39  NNERLEFLGDSLLNFLIAENLYQRFPKAREGDLSRLRASLVKGETLAELAKDFDLGEFLY 98

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGID-VADQVF-------------SSVLY 927
              G            +A+  EAL+GA++L+ G+D   D V              SSV  
Sbjct: 99  LGEGELKSGGFRRASILADAVEALIGAIYLESGMDRCRDTVLHWFGERLDAIDLNSSV-- 156

Query: 928 KDNEVRFKQWMYYPQHPL 945
           KD + R ++++   + PL
Sbjct: 157 KDPKTRLQEYLQELRQPL 174


>gi|253827732|ref|ZP_04870617.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
 gi|313141944|ref|ZP_07804137.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
 gi|253511138|gb|EES89797.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
 gi|313130975|gb|EFR48592.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
          Length = 224

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 70/121 (57%), Gaps = 2/121 (1%)

Query: 806 IMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQ 865
           +   L  K A +S  THNERLEFLGDAV++ I    L+  FP   EG L+  RA++V  +
Sbjct: 20  LQEALTHKSAKKS--THNERLEFLGDAVLDLIIGEFLYKKFPHSPEGELSKMRASMVNEK 77

Query: 866 HLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSV 925
             A +A+ + + +++  +H  +  +  E    ++N FEA++GA++L+ G++    +   +
Sbjct: 78  AFAKIARYLNIGEYLYISHSEEQNNGREKDSILSNAFEAIVGAIYLESGLEKVQTIVLKI 137

Query: 926 L 926
           L
Sbjct: 138 L 138


>gi|410421196|ref|YP_006901645.1| ribonuclease III [Bordetella bronchiseptica MO149]
 gi|408448491|emb|CCJ60174.1| ribonuclease III [Bordetella bronchiseptica MO149]
          Length = 256

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 7/120 (5%)

Query: 809 KLGRKVATESNITH-------NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAI 861
           + G K   E  +TH       NERLEFLGD+V+ F+ +  LF  +  ++EG L+  RA +
Sbjct: 16  RFGDKALLEQALTHRSHGARHNERLEFLGDSVLNFVVAAMLFERYGKLDEGDLSRLRANL 75

Query: 862 VQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           V+   LA +A+R+ L  ++    G            +A+  EAL GA+FLD G + A +V
Sbjct: 76  VKQASLADIAQRLDLSQYLRLGEGELKSGGFRRPSILADTVEALFGAVFLDAGFEAARRV 135


>gi|58584360|ref|YP_197933.1| ribonuclease III [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|75498100|sp|Q5GTI3.1|RNC_WOLTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|58418676|gb|AAW70691.1| dsRNA-specific ribonuclease [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 243

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 100/215 (46%), Gaps = 68/215 (31%)

Query: 741 IQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGI 800
           I Y+F+N  +L+ ALTHPS          + RNS                          
Sbjct: 22  INYRFKNDAILEEALTHPSL---------NKRNS-------------------------- 46

Query: 801 NTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAA 860
                           ++ I + ERLEFLGD+++  I S  LF +FP  +EG LA  +  
Sbjct: 47  ----------------KNQIENYERLEFLGDSILNMIVSAILFRLFPKEKEGALARRKTD 90

Query: 861 IVQNQHLAHLAKRIGLEDFMLYAHGSDLCH--EVELKHAMANCFEALMGALFLDGGIDVA 918
           +V    +A++AK I L +F++  + S+ C+  +  LK+ + N  EAL+GA+++DGG    
Sbjct: 91  LVCGNTIANVAKEIKLGNFIIM-NNSERCNGGKRNLKN-LENALEALIGAIYIDGG---- 144

Query: 919 DQVFSSV---LYKDNEVRFKQWMYYPQHP---LQE 947
              F++V   + K  E R K  +  PQ P   LQE
Sbjct: 145 ---FANVKKFVTKHWEERAKGMLSLPQDPKTSLQE 176


>gi|410462395|ref|ZP_11315978.1| ribonuclease III [Desulfovibrio magneticus str. Maddingley MBC34]
 gi|409984486|gb|EKO40792.1| ribonuclease III [Desulfovibrio magneticus str. Maddingley MBC34]
          Length = 243

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/123 (38%), Positives = 64/123 (52%), Gaps = 7/123 (5%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDAV+E   S  LF +FP+  EG L   R+ +V    LA +A R+GL   + 
Sbjct: 51  HNERLEFLGDAVLELSVSEELFSLFPEAPEGELTLLRSQLVNESSLAAMALRLGLAGHVR 110

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYP 941
              G +          +++ FEA++GA+FLDGG   A + F S  +        QW   P
Sbjct: 111 LGRGEENQGGRSRPSLLSDVFEAVVGAIFLDGGY-AAARTFVSRTFDG------QWPERP 163

Query: 942 QHP 944
             P
Sbjct: 164 AAP 166


>gi|107022210|ref|YP_620537.1| ribonuclease III [Burkholderia cenocepacia AU 1054]
 gi|116689156|ref|YP_834779.1| ribonuclease III [Burkholderia cenocepacia HI2424]
 gi|105892399|gb|ABF75564.1| RNAse III [Burkholderia cenocepacia AU 1054]
 gi|116647245|gb|ABK07886.1| RNAse III [Burkholderia cenocepacia HI2424]
          Length = 409

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 58/102 (56%)

Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
           THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D +
Sbjct: 32  THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISDGL 91

Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
               G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 92  RLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 133


>gi|385264719|ref|ZP_10042806.1| ribonuclease III [Bacillus sp. 5B6]
 gi|385149215|gb|EIF13152.1| ribonuclease III [Bacillus sp. 5B6]
          Length = 253

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/126 (38%), Positives = 66/126 (52%), Gaps = 2/126 (1%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S  LF  +P + EG L   RAAIV    L  LA  +   D +L 
Sbjct: 62  NERLEFLGDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLL 121

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    +    +A+ FEA +GAL+LD G++   Q     ++ K N+  F   M + 
Sbjct: 122 GKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEPVQQFLKVYVFPKINDGAFSHVMDFK 181

Query: 942 QHPLQE 947
              LQE
Sbjct: 182 SQ-LQE 186


>gi|126654291|ref|ZP_01726068.1| ribonuclease III [Bacillus sp. B14905]
 gi|126589255|gb|EAZ83416.1| ribonuclease III [Bacillus sp. B14905]
          Length = 254

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/112 (37%), Positives = 60/112 (53%)

Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
           T NERLEFLGDAV+E   S +LF  +P++ EG L   RA+IV    L   A  +G   F+
Sbjct: 59  TDNERLEFLGDAVLELSVSKYLFEKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFV 118

Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV 932
           L   G +L    E    +A+ FE+ +GAL+LD  +         +++   EV
Sbjct: 119 LLGKGEELTGGRERPALLADVFESFVGALYLDQDLQTVVSFLERIVFPKVEV 170


>gi|254245911|ref|ZP_04939232.1| Ribonuclease III [Burkholderia cenocepacia PC184]
 gi|124870687|gb|EAY62403.1| Ribonuclease III [Burkholderia cenocepacia PC184]
          Length = 350

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 58/102 (56%)

Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
           THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D +
Sbjct: 50  THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISDGL 109

Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
               G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 110 RLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 151


>gi|308173556|ref|YP_003920261.1| ribonuclease III [Bacillus amyloliquefaciens DSM 7]
 gi|384159423|ref|YP_005541496.1| ribonuclease III [Bacillus amyloliquefaciens TA208]
 gi|384164142|ref|YP_005545521.1| ribonuclease III [Bacillus amyloliquefaciens LL3]
 gi|384168470|ref|YP_005549848.1| ribonuclease III [Bacillus amyloliquefaciens XH7]
 gi|307606420|emb|CBI42791.1| ribonuclease III [Bacillus amyloliquefaciens DSM 7]
 gi|328553511|gb|AEB24003.1| ribonuclease III [Bacillus amyloliquefaciens TA208]
 gi|328911697|gb|AEB63293.1| ribonuclease III [Bacillus amyloliquefaciens LL3]
 gi|341827749|gb|AEK89000.1| ribonuclease III [Bacillus amyloliquefaciens XH7]
          Length = 249

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/126 (38%), Positives = 66/126 (52%), Gaps = 2/126 (1%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S  LF  +P + EG L   RAAIV    L  LA  +   D +L 
Sbjct: 58  NERLEFLGDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLL 117

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    +    +A+ FEA +GAL+LD G++   Q     ++ K N+  F   M + 
Sbjct: 118 GKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEPVQQFLKVYVFPKINDGAFSHVMDFK 177

Query: 942 QHPLQE 947
              LQE
Sbjct: 178 SQ-LQE 182


>gi|170732444|ref|YP_001764391.1| ribonuclease III [Burkholderia cenocepacia MC0-3]
 gi|169815686|gb|ACA90269.1| Ribonuclease III [Burkholderia cenocepacia MC0-3]
          Length = 409

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 58/102 (56%)

Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
           THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + D +
Sbjct: 32  THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISDGL 91

Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
               G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 92  RLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 133


>gi|229818312|ref|ZP_04448593.1| hypothetical protein BIFANG_03612 [Bifidobacterium angulatum DSM
           20098 = JCM 7096]
 gi|229784182|gb|EEP20296.1| hypothetical protein BIFANG_03612 [Bifidobacterium angulatum DSM
           20098 = JCM 7096]
          Length = 246

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 9/138 (6%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAK-RIGLEDFM 880
           H ERLEFLGDAV+E I++  LF + PD+ EG LA  RA  V  + L+ +A+ ++ +E ++
Sbjct: 57  HYERLEFLGDAVLELISTETLFRLHPDMSEGELAKMRAKAVSEEALSAIARTKLHVEPYI 116

Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA--------DQVFSSVLYKDNEV 932
           L  HG       +    + +  E+L+GA FL+ GID A        D   + V  +   +
Sbjct: 117 LLGHGEATQGGAQKSSILCDIVESLIGATFLEHGIDGARKVVHRLIDDTLAEVATEGPAL 176

Query: 933 RFKQWMYYPQHPLQEQEP 950
            +K  +    H L + EP
Sbjct: 177 DWKTSLTVKAHHLGKGEP 194


>gi|33593415|ref|NP_881059.1| ribonuclease III [Bordetella pertussis Tohama I]
 gi|33597819|ref|NP_885462.1| ribonuclease III [Bordetella parapertussis 12822]
 gi|33602721|ref|NP_890281.1| ribonuclease III [Bordetella bronchiseptica RB50]
 gi|384204710|ref|YP_005590449.1| ribonuclease III [Bordetella pertussis CS]
 gi|408416453|ref|YP_006627160.1| ribonuclease III [Bordetella pertussis 18323]
 gi|410473788|ref|YP_006897069.1| ribonuclease III [Bordetella parapertussis Bpp5]
 gi|427815737|ref|ZP_18982801.1| ribonuclease III [Bordetella bronchiseptica 1289]
 gi|427818292|ref|ZP_18985355.1| ribonuclease III [Bordetella bronchiseptica D445]
 gi|427825850|ref|ZP_18992912.1| ribonuclease III [Bordetella bronchiseptica Bbr77]
 gi|81424808|sp|Q7VW39.1|RNC_BORPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|81426476|sp|Q7W5J6.1|RNC_BORPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|81429935|sp|Q7WD32.1|RNC_BORBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|33572771|emb|CAE42703.1| ribonuclease III [Bordetella pertussis Tohama I]
 gi|33574248|emb|CAE38580.1| ribonuclease III [Bordetella parapertussis]
 gi|33577163|emb|CAE35720.1| ribonuclease III [Bordetella bronchiseptica RB50]
 gi|332382824|gb|AEE67671.1| ribonuclease III [Bordetella pertussis CS]
 gi|401778623|emb|CCJ64063.1| ribonuclease III [Bordetella pertussis 18323]
 gi|408443898|emb|CCJ50592.1| ribonuclease III [Bordetella parapertussis Bpp5]
 gi|410566737|emb|CCN24306.1| ribonuclease III [Bordetella bronchiseptica 1289]
 gi|410569292|emb|CCN17385.1| ribonuclease III [Bordetella bronchiseptica D445]
 gi|410591115|emb|CCN06212.1| ribonuclease III [Bordetella bronchiseptica Bbr77]
          Length = 256

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 7/120 (5%)

Query: 809 KLGRKVATESNITH-------NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAI 861
           + G K   E  +TH       NERLEFLGD+V+ F+ +  LF  +  ++EG L+  RA +
Sbjct: 16  RFGDKALLEQALTHRSHGARHNERLEFLGDSVLNFVVAAMLFERYGKLDEGDLSRLRANL 75

Query: 862 VQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           V+   LA +A+R+ L  ++    G            +A+  EAL GA+FLD G + A +V
Sbjct: 76  VKQASLADIAQRLDLSQYLRLGEGELKSGGFRRPSILADTVEALFGAVFLDAGFEAARRV 135


>gi|384045183|ref|YP_005493200.1| Ribonuclease III [Bacillus megaterium WSH-002]
 gi|345442874|gb|AEN87891.1| Ribonuclease III [Bacillus megaterium WSH-002]
          Length = 248

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 1/131 (0%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S  LF  +P + EG L   RAA+V    L   A  +     +L 
Sbjct: 58  NERLEFLGDAVLELTVSQFLFKKYPTMSEGELTKLRAAVVCEPSLVTFANEMDFGKLVLL 117

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++         +A+ FEA +GAL+LD G+D    +   V++ K NE  F   M + 
Sbjct: 118 GKGEEMTGGRSRPALLADVFEAFIGALYLDQGLDTVVTILKKVVFPKINEGAFSHVMDFK 177

Query: 942 QHPLQEQEPDG 952
               +  + DG
Sbjct: 178 SQLQEVIQRDG 188


>gi|299144133|ref|ZP_07037213.1| ribonuclease III [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518618|gb|EFI42357.1| ribonuclease III [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 233

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 93/191 (48%), Gaps = 53/191 (27%)

Query: 732 RSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIH 791
           +++++L   ++Y+F+N   + +ALTH SY      N  + ++++SN              
Sbjct: 3   KNVSILLSLLEYEFKNDKYINIALTHSSY-----INEHNLKDTVSN-------------- 43

Query: 792 FQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEE 851
                                           ERLEFLGDAV++ I   + ++   +++E
Sbjct: 44  --------------------------------ERLEFLGDAVLDLIIGEYFYYSHKNLKE 71

Query: 852 GGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHA-MANCFEALMGALF 910
           G L+  R+ +V    L  +A  I + DFM +  G ++ ++  L+ + +++C EAL+GA++
Sbjct: 72  GSLSKLRSKVVNENSLYKIATNISIGDFMYFGKG-EIKNKGNLRESTLSDCLEALIGAIY 130

Query: 911 LDGGIDVADQV 921
           +DGG+D   +V
Sbjct: 131 IDGGLDAVRKV 141


>gi|384265175|ref|YP_005420882.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum YAU
           B9601-Y2]
 gi|387898172|ref|YP_006328468.1| ribonuclease III [Bacillus amyloliquefaciens Y2]
 gi|380498528|emb|CCG49566.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum YAU
           B9601-Y2]
 gi|387172282|gb|AFJ61743.1| ribonuclease III [Bacillus amyloliquefaciens Y2]
          Length = 249

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/126 (38%), Positives = 66/126 (52%), Gaps = 2/126 (1%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S  LF  +P + EG L   RAAIV    L  LA  +   D +L 
Sbjct: 58  NERLEFLGDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLL 117

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    +    +A+ FEA +GAL+LD G++   Q     ++ K N+  F   M + 
Sbjct: 118 GKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEPVQQFLKVYVFPKINDGAFSHVMDFK 177

Query: 942 QHPLQE 947
              LQE
Sbjct: 178 SQ-LQE 182


>gi|374300750|ref|YP_005052389.1| ribonuclease 3 [Desulfovibrio africanus str. Walvis Bay]
 gi|332553686|gb|EGJ50730.1| Ribonuclease 3 [Desulfovibrio africanus str. Walvis Bay]
          Length = 233

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/113 (39%), Positives = 65/113 (57%), Gaps = 1/113 (0%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           E  +  NERLEFLGDAV+E   S  LF  FP   EG L   R+ +V+ + LA  A+ +GL
Sbjct: 39  ELALESNERLEFLGDAVLELAISECLFQRFPMAHEGQLTRIRSRLVKEKTLAQRARDLGL 98

Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 929
           +  +L   G +     +    +A+  EAL+GA+FLDGG  +A + F S  ++D
Sbjct: 99  DRLILLGRGEESQGGRDRDSVLADALEALLGAVFLDGGY-LAAREFVSRTFQD 150


>gi|350270970|ref|YP_004882278.1| ribonuclease III [Oscillibacter valericigenes Sjm18-20]
 gi|348595812|dbj|BAK99772.1| ribonuclease III [Oscillibacter valericigenes Sjm18-20]
          Length = 235

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 81/190 (42%), Gaps = 51/190 (26%)

Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
           LE ++ Y FQN  LL+ AL H SY                       E+  RR++     
Sbjct: 12  LETKMNYTFQNPALLEEALNHSSYAN---------------------EHRSRRMN----- 45

Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
                                     NERLEFLGD+V+ F+T+  LF   PD+ EG L  
Sbjct: 46  -------------------------SNERLEFLGDSVLGFVTAEFLFLQHPDLPEGDLTR 80

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            RAA+V  Q L  +A+++ L  ++    G +     E    +A+  EA+  A++LDGGI 
Sbjct: 81  IRAALVCEQSLYEVARKLELGRYLKLGKGEEAGGGRERTSILADATEAVFAAVYLDGGIT 140

Query: 917 VADQVFSSVL 926
            A  +    L
Sbjct: 141 AASALIHRCL 150


>gi|269926036|ref|YP_003322659.1| ribonuclease III [Thermobaculum terrenum ATCC BAA-798]
 gi|269789696|gb|ACZ41837.1| ribonuclease III [Thermobaculum terrenum ATCC BAA-798]
          Length = 234

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 59/217 (27%), Positives = 95/217 (43%), Gaps = 53/217 (24%)

Query: 733 SLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHF 792
           S   L++R+ YKF+N  LL+ ALTH S+          A  SL                 
Sbjct: 6   SFITLQERLGYKFRNIELLKTALTHRSF----------ANESLEK--------------- 40

Query: 793 QNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEG 852
                                  TE+N    ER EFLGD+++ F+    LF +FP   EG
Sbjct: 41  -----------------------TETN----ERFEFLGDSILAFVVGEALFRLFPRASEG 73

Query: 853 GLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLD 912
            L   RA +V  ++LA +++ +G+ DF+L   G+ L    + +  +A+  EAL+ A++LD
Sbjct: 74  ILTRARAHLVGRKNLADISRTLGIGDFILLGKGARLSGSSQSESVLADALEALIAAVYLD 133

Query: 913 GGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 949
             ++    V   +L    E   + W+    +  + QE
Sbjct: 134 SDLETCRSVVFRLLRLSKE-EIEHWLDVKDNKTRLQE 169


>gi|116618659|ref|YP_819030.1| ribonuclease III [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|381337037|ref|YP_005174812.1| ribonuclease III [Leuconostoc mesenteroides subsp. mesenteroides
           J18]
 gi|122271141|sp|Q03VW5.1|RNC_LEUMM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116097506|gb|ABJ62657.1| RNAse III [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|356645003|gb|AET30846.1| ribonuclease III [Leuconostoc mesenteroides subsp. mesenteroides
           J18]
          Length = 236

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 60/104 (57%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           +RLEFLGD+V++ I + +LF  +PD  EG L   R A+VQ +  AH ++ + L + +   
Sbjct: 46  QRLEFLGDSVMQMIVAEYLFKRYPDWHEGQLTEMRIAMVQTRSFAHFSRMVHLNEGIRLG 105

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            G ++    +    + + +EA +GAL+LD G DV  Q  +  L+
Sbjct: 106 KGEEMSGARDRDSLLEDIWEAFIGALYLDQGADVVRQFLNQTLF 149


>gi|347532247|ref|YP_004839010.1| ribonuclease III [Roseburia hominis A2-183]
 gi|345502395|gb|AEN97078.1| ribonuclease III [Roseburia hominis A2-183]
          Length = 232

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/214 (29%), Positives = 89/214 (41%), Gaps = 53/214 (24%)

Query: 734 LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
           L  LE  I Y+F  + LLQ ALTH S+      N  H                       
Sbjct: 4   LTELEQVIGYEFNEQRLLQQALTHSSF-----ANEKH----------------------- 35

Query: 794 NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
                        M KL          + NERLEFLGDAV+E ++S  L+    D+ EG 
Sbjct: 36  -------------MKKL----------SDNERLEFLGDAVLEVVSSEFLYKEHTDLPEGD 72

Query: 854 LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
           L   RA+IV    LA   + I L  ++    G +L      K  +++  EA++GA++LDG
Sbjct: 73  LTKLRASIVCEPTLALCTREIDLGKYLYLGKGENLTGGRGRKSILSDALEAVIGAIYLDG 132

Query: 914 GIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
           G + A       +  D  +  K+  Y  +  LQE
Sbjct: 133 GFEPAKAFIHRFILTD--IEHKKLFYDSKTILQE 164



 Score = 45.4 bits (106), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDY 1020
            + +L  LE   G  FN  RLL +  T  S         L  N+RLEFLGD VL++++S++
Sbjct: 1    MSKLTELEQVIGYEFNEQRLLQQALTHSSFANEKHMKKLSDNERLEFLGDAVLEVVSSEF 60

Query: 1021 LY 1022
            LY
Sbjct: 61   LY 62


>gi|158320491|ref|YP_001512998.1| ribonuclease III [Alkaliphilus oremlandii OhILAs]
 gi|158140690|gb|ABW19002.1| Ribonuclease III [Alkaliphilus oremlandii OhILAs]
          Length = 241

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 67/116 (57%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           +  + +NERLEFLGD+V+  + S +++  + D+ EG L   RA +V    L + AK I L
Sbjct: 43  KKQVQNNERLEFLGDSVLGIVVSEYIYLKYKDLPEGELTKIRANVVCEPSLGNQAKEIKL 102

Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV 932
             ++L   G +     +    +A+ FEA++GAL+LDGGI VA +    +L +  E+
Sbjct: 103 GQYLLLGKGEEATGGRDRVSILADAFEAVIGALYLDGGIAVAGKFILDMLTRSIEL 158


>gi|313890255|ref|ZP_07823889.1| ribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
 gi|416852429|ref|ZP_11909574.1| ribonuclease III [Streptococcus pseudoporcinus LQ 940-04]
 gi|313121360|gb|EFR44465.1| ribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
 gi|356739918|gb|EHI65150.1| ribonuclease III [Streptococcus pseudoporcinus LQ 940-04]
          Length = 230

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 7/141 (4%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDAV++ I S +LF  +P   EG L+  R+ IV+ + LA  ++    + 
Sbjct: 39  NISHNERLEFLGDAVLQLIISEYLFKKYPSKPEGDLSKLRSMIVREESLAGFSRFCSFDT 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID----VADQVFSSVLYKDNEVRF 934
           ++    G +          + + FEA +GAL LD GI+      +QV    + K N  + 
Sbjct: 99  YIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGIEDVRLFLNQVMIPQVEKGNFEKV 158

Query: 935 KQWMYYPQHPLQEQEPDGDRQ 955
           K +    Q  LQ +   GD Q
Sbjct: 159 KDYKTSLQEVLQAK---GDVQ 176



 Score = 46.2 bits (108), Expect = 0.096,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 7/65 (10%)

Query: 963  LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 1017
            +K+L+  L+ +  ++FN   LL   FT  S  Y N    L +  N+RLEFLGD VLQLI 
Sbjct: 1    MKKLKALLKETFNIVFNDQDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLII 58

Query: 1018 SDYLY 1022
            S+YL+
Sbjct: 59   SEYLF 63


>gi|307245400|ref|ZP_07527488.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306853741|gb|EFM85958.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
          Length = 243

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/97 (39%), Positives = 58/97 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ F     LF  FP   EG L+  RA +V+ Q LA LA++ GL ++M 
Sbjct: 53  NNERLEFLGDSILNFAIGKALFEKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMK 112

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
              G         +  +++C EA++ A++LD G+D A
Sbjct: 113 LGAGELKSGGYRRESILSDCVEAIIAAIYLDAGMDKA 149


>gi|448932731|gb|AGE56289.1| RNase III [Paramecium bursaria Chlorella virus NE-JV-1]
          Length = 255

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 61/105 (58%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           ERLEFLGD+V+ F+ + +LF  FP   EG L   R   V  + L+ LA  IGL +F++ +
Sbjct: 65  ERLEFLGDSVLGFLIAKYLFDAFPGKNEGILTRIRVKFVSGKFLSKLAHNIGLHNFIIMS 124

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 928
                        ++ + FEAL+GA++LD GI+ A Q F S+L K
Sbjct: 125 QKGLYRGWHTNPKSLEDAFEALIGAIYLDLGINAARQFFMSILTK 169


>gi|294500965|ref|YP_003564665.1| ribonuclease III [Bacillus megaterium QM B1551]
 gi|294350902|gb|ADE71231.1| ribonuclease III [Bacillus megaterium QM B1551]
          Length = 248

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 1/131 (0%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S  LF  +P + EG L   RAA+V    L   A  +     +L 
Sbjct: 58  NERLEFLGDAVLELTVSQFLFKKYPTMSEGELTKLRAAVVCEPSLVTFANEMDFGKLVLL 117

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++         +A+ FEA +GAL+LD G+D    +   V++ K NE  F   M + 
Sbjct: 118 GKGEEMTGGRSRPALLADVFEAFIGALYLDQGLDTVVTILKKVVFPKINEGAFSHVMDFK 177

Query: 942 QHPLQEQEPDG 952
               +  + DG
Sbjct: 178 SQLQEVIQRDG 188


>gi|312194940|ref|YP_004015001.1| ribonuclease III [Frankia sp. EuI1c]
 gi|311226276|gb|ADP79131.1| ribonuclease III [Frankia sp. EuI1c]
          Length = 319

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/102 (38%), Positives = 66/102 (64%), Gaps = 3/102 (2%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI---GLEDF 879
           NERLEFLGDAV++ + +  L++  PD+ EG LA  RA++V ++ LA +A+ I   G+  +
Sbjct: 65  NERLEFLGDAVLQLVVTDALYNRHPDLPEGALAKQRASVVNSRALADVARVIGPKGIGPY 124

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           +L   G +     +    +A+  EAL+GA++L+ G++VA Q+
Sbjct: 125 LLLGKGEETTGGRDKASILADTLEALIGAVYLELGLEVAAQL 166



 Score = 50.8 bits (120), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/41 (58%), Positives = 28/41 (68%)

Query: 982  LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            LL R  T RS  Y N  L +N+RLEFLGD VLQL+ +D LY
Sbjct: 45   LLDRALTHRSYAYENGGLPTNERLEFLGDAVLQLVVTDALY 85


>gi|154283385|ref|XP_001542488.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150410668|gb|EDN06056.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1359

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 101/229 (44%), Gaps = 41/229 (17%)

Query: 824  ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM--- 880
            ERLEFLGD  ++  TSI LF + PD +E      R  ++ NQ+L + A R+ L +F+   
Sbjct: 935  ERLEFLGDCFLKMATSISLFAMNPDNDEFDFHVKRMCLICNQNLFNTAVRLKLYEFVRTQ 994

Query: 881  ------LYAHGSDLCH------EVELKHAM-----ANCFEALMGALFLDGG----IDVAD 919
                   Y  G  L          + K A+     A+  EAL+GA  L GG     D A 
Sbjct: 995  GFSRRNWYPEGIKLLQGKAQPESAQNKQALGDKTIADICEALIGASLLSGGKACRFDTAV 1054

Query: 920  QVFSSVLYKDNEVRFKQWMYY------PQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSS 973
            +  +  +  DN  R   W  Y      P + + + +         Q  L KQ+       
Sbjct: 1055 KAVTVFVDSDNH-RVSDWNSYIDLYSLPSYQIAQADAG-------QLDLAKQIG---NRL 1103

Query: 974  GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            G  F + RLL   FT  S      T+   QRLEFLGD++L ++  +YLY
Sbjct: 1104 GYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLY 1152



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 26/135 (19%)

Query: 818  SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
            S +   +RLEFLGD++++ +   +L+H +PD +   L  ++ A+V N+ L  +  ++GL 
Sbjct: 1127 STVPCYQRLEFLGDSLLDMVCVEYLYHHYPDRDPQWLTEHKMAMVSNKFLGAVTVKLGLH 1186

Query: 878  DFMLYAHGSDL------CHEVELKHA------------------MANCFEALMGALFLDG 913
              +LY   +          E+E+  A                  + +  EA +GA+F+D 
Sbjct: 1187 KHLLYISNALFGQITRYAEEIEVAVAESADSPDAWTTTSDPPKCLPDMLEAYIGAIFVDS 1246

Query: 914  --GIDVADQVFSSVL 926
                +V +  F   L
Sbjct: 1247 NFSFEVVEDFFQRYL 1261


>gi|416067984|ref|ZP_11582572.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype f
           str. D18P1]
 gi|348001460|gb|EGY42202.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype f
           str. D18P1]
          Length = 226

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 16/146 (10%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDA++       LFH FP   EG L+  RA +V+   LA LA+   L D++L
Sbjct: 36  HNERLEFLGDAILNLTIGEALFHQFPKCNEGELSRMRATLVREPTLALLAQDFKLGDYIL 95

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYP 941
              G         +  +A+C EA++GA+ LD  +  A Q+              QW    
Sbjct: 96  LGQGELKSGGFRRESILADCVEAIIGAISLDSNLTNATQIVC------------QWY--- 140

Query: 942 QHPLQEQEPDGDRQWVEQSPLLKQLQ 967
           Q+ L+E +P GD Q   ++ L + LQ
Sbjct: 141 QNLLKEIKP-GDNQKDAKTRLQEYLQ 165


>gi|295706311|ref|YP_003599386.1| ribonuclease III [Bacillus megaterium DSM 319]
 gi|294803970|gb|ADF41036.1| ribonuclease III [Bacillus megaterium DSM 319]
          Length = 265

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 1/131 (0%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S  LF  +P + EG L   RAA+V    L   A  +     +L 
Sbjct: 75  NERLEFLGDAVLELTVSQFLFKKYPTMSEGELTKLRAAVVCEPSLVTFANEMDFGKLVLL 134

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++         +A+ FEA +GAL+LD G+D    +   V++ K NE  F   M + 
Sbjct: 135 GKGEEMTGGRSRPALLADVFEAFIGALYLDQGLDTVVTILKKVVFPKINEGAFSHVMDFK 194

Query: 942 QHPLQEQEPDG 952
               +  + DG
Sbjct: 195 SQLQEVIQRDG 205


>gi|227872403|ref|ZP_03990750.1| ribonuclease III [Oribacterium sinus F0268]
 gi|227841763|gb|EEJ52046.1| ribonuclease III [Oribacterium sinus F0268]
          Length = 241

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 62/224 (27%)

Query: 733 SLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHF 792
           SL+ LE+ + Y FQ++ LL  ALTHPSY    G +P  A                     
Sbjct: 10  SLSKLEEDLGYHFQDQKLLLHALTHPSYSNEMG-HPKEAS-------------------- 48

Query: 793 QNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEG 852
                                         N+RLEFLGDAV+E ++S  L+H  P I+EG
Sbjct: 49  ------------------------------NQRLEFLGDAVLELVSSTLLYHKKPVIQEG 78

Query: 853 GLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHA-MANCFEALMGALFL 911
            +   RAA+V    LA +AK + L  ++L   G +    ++ + + +++  EA++GA++L
Sbjct: 79  RMTKLRAALVCESALAVVAKSLQLSSYLLLGKGEER-EGIQFRDSVLSDALEAVIGAIYL 137

Query: 912 DGGIDVAD-----QVFSSV----LYKDNEVRFKQWMYYPQHPLQ 946
           DGG+  A+     +V S +    L++D +   +++    ++PL+
Sbjct: 138 DGGMKKAECFVRGKVLSDIEHKTLFQDAKTMLQEYCTAKRYPLE 181


>gi|310794641|gb|EFQ30102.1| RNase3 domain-containing protein [Glomerella graminicola M1.001]
          Length = 1447

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 114/257 (44%), Gaps = 41/257 (15%)

Query: 788  RRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFP 847
            R +     R   I+ L  I++ +    A+E   T+ ER+EFLGD++++F  +I++  + P
Sbjct: 957  RELSLGLLRPLAISDLSLILTAISTGSASEP--TNYERIEFLGDSILKFSATINVAALNP 1014

Query: 848  DIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML-----------------YAHGSDLCH 890
               E  L+ ++ AIV N  L   A + GL+ ++L                  + G D   
Sbjct: 1015 QWPERLLSFHKDAIVSNSTLCKAAVKHGLDRYILTKPFTGQKWRPIYVDSVLSRGEDKSM 1074

Query: 891  EVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDN-----EVRFKQWMYYPQHPL 945
                   +A+  EAL+GA  +DGG+D A +  S  L + N       R   + + P    
Sbjct: 1075 RKMSTKTLADIVEALIGASMIDGGLDKALKCMSIFLQQINWRTLDACRLALYNFSP---- 1130

Query: 946  QEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRL 1005
                PD +        L   L+ LE+  G  F+   LL +  T  S    N   G  +RL
Sbjct: 1131 ----PDVE--------LPSTLEPLEHLIGYKFDRKTLLIQAMTHASFNLGN-PFGCLERL 1177

Query: 1006 EFLGDTVLQLITSDYLY 1022
            EF+GD+VL  +  + L+
Sbjct: 1178 EFMGDSVLDYVVVNRLF 1194


>gi|15615052|ref|NP_243355.1| ribonuclease III [Bacillus halodurans C-125]
 gi|20139354|sp|Q9KA05.1|RNC_BACHD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|10175109|dbj|BAB06208.1| ribonuclease III [Bacillus halodurans C-125]
          Length = 263

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +L+  F  + EG +   RA+IV    LA LA+ +   + +L 
Sbjct: 73  NERLEFLGDAVLELAVSQYLYKAFEQMSEGDMTKLRASIVCEPSLAQLAEELHFGELVLL 132

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWM 938
             G ++    +    +A+ FE+ +GAL+LD G+D         +Y K +E  F   M
Sbjct: 133 GKGEEMTGGRKRPALLADVFESFVGALYLDQGMDAVYLFLERTIYPKISEGAFSHMM 189


>gi|397169628|ref|ZP_10493060.1| RNAse III [Alishewanella aestuarii B11]
 gi|396088932|gb|EJI86510.1| RNAse III [Alishewanella aestuarii B11]
          Length = 226

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 57/95 (60%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDA++  I +  LF  FP   EG L   R+A+V+   LA +A+ +GL DF+ 
Sbjct: 37  HNERLEFLGDALLGLIIAEALFARFPQTREGDLTRMRSALVKGVTLASIAQELGLSDFLR 96

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
              G         +  +A+  EA++GA++LD G++
Sbjct: 97  LGPGELKSGGFRRESILADALEAILGAIYLDSGME 131


>gi|375110957|ref|ZP_09757171.1| RNAse III [Alishewanella jeotgali KCTC 22429]
 gi|374568989|gb|EHR40158.1| RNAse III [Alishewanella jeotgali KCTC 22429]
          Length = 226

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 57/95 (60%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDA++  I +  LF  FP   EG L   R+A+V+   LA +A+ +GL DF+ 
Sbjct: 37  HNERLEFLGDALLGLIIAEALFARFPQTREGDLTRMRSALVKGVTLASIAQELGLSDFLR 96

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
              G         +  +A+  EA++GA++LD G++
Sbjct: 97  LGPGELKSGGFRRESILADALEAILGAIYLDSGME 131


>gi|435854133|ref|YP_007315452.1| ribonuclease III [Halobacteroides halobius DSM 5150]
 gi|433670544|gb|AGB41359.1| ribonuclease III [Halobacteroides halobius DSM 5150]
          Length = 232

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/110 (36%), Positives = 65/110 (59%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           E  I  NERLEFLGD+V++ I S ++F  +PD  EG LA  R+ +V    LA  A+ I L
Sbjct: 40  ELKIKDNERLEFLGDSVLDLIISRYIFLNYPDHPEGELAKIRSVVVSAPILAEKAREIEL 99

Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
             +ML   G ++    +    +A+ FEA++G+++LD G++ + +    +L
Sbjct: 100 GKYMLLGKGEEMTGGRKRDSILADGFEAVVGSIYLDQGLEASQEFILDLL 149



 Score = 41.2 bits (95), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 6/52 (11%)

Query: 975  VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
            V F+ ++LL +  T +S  Y N    L +  N+RLEFLGD+VL LI S Y++
Sbjct: 17   VQFSDLKLLEKAITHKS--YANEKQELKIKDNERLEFLGDSVLDLIISRYIF 66


>gi|392330868|ref|ZP_10275483.1| ribonuclease III [Streptococcus canis FSL Z3-227]
 gi|391418547|gb|EIQ81359.1| ribonuclease III [Streptococcus canis FSL Z3-227]
          Length = 230

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/108 (35%), Positives = 60/108 (55%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDAV++ I S +LF  +P   EG ++  R+ IV+ + LA  ++    + 
Sbjct: 39  NISHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDT 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           ++    G +          + + FEA +GAL LD G+D   +    V+
Sbjct: 99  YIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGVDEVRRFLKQVM 146



 Score = 43.9 bits (102), Expect = 0.53,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 7/65 (10%)

Query: 963  LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 1017
            +K+L+ L  +S  + F    LL   FT  S  Y N    L +  N+RLEFLGD VLQLI 
Sbjct: 1    MKKLEELLAASFNIYFEDHTLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLII 58

Query: 1018 SDYLY 1022
            S+YL+
Sbjct: 59   SEYLF 63


>gi|345304499|ref|YP_004826401.1| ribonuclease 3 [Rhodothermus marinus SG0.5JP17-172]
 gi|345113732|gb|AEN74564.1| Ribonuclease 3 [Rhodothermus marinus SG0.5JP17-172]
          Length = 260

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/102 (38%), Positives = 63/102 (61%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           +S++  NERLEFLGDAV+ F+ + +L+  FPD  EG L   RA +V  + LA  A+R+GL
Sbjct: 58  DSHLHSNERLEFLGDAVLGFVVAAYLYEHFPDRNEGFLTRLRAKLVNREALAQAARRLGL 117

Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
              +  +   +     +    +++ FEAL+GA++LD G++ A
Sbjct: 118 GAHVRLSENMERAGGRDNDSILSDAFEALVGAIYLDLGLEAA 159


>gi|307252103|ref|ZP_07534002.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306860403|gb|EFM92417.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 243

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/97 (39%), Positives = 58/97 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ F     LF  FP   EG L+  RA +V+ Q LA LA++ GL ++M 
Sbjct: 53  NNERLEFLGDSILNFAIGKALFEKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMK 112

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
              G         +  +++C EA++ A++LD G+D A
Sbjct: 113 LGAGELKSGGYRRESILSDCVEAIIAAIYLDAGMDKA 149


>gi|419838153|ref|ZP_14361591.1| ribonuclease III [Vibrio cholerae HC-46B1]
 gi|423736114|ref|ZP_17709304.1| ribonuclease III [Vibrio cholerae HC-41B1]
 gi|424010447|ref|ZP_17753380.1| ribonuclease III [Vibrio cholerae HC-44C1]
 gi|408629086|gb|EKL01799.1| ribonuclease III [Vibrio cholerae HC-41B1]
 gi|408856701|gb|EKL96396.1| ribonuclease III [Vibrio cholerae HC-46B1]
 gi|408863076|gb|EKM02572.1| ribonuclease III [Vibrio cholerae HC-44C1]
          Length = 221

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+  FP + EG ++  RA +V+   LA L +   L 
Sbjct: 27  ANGKHNERLEFLGDSILSFVIADELYRRFPKVNEGDMSRMRATLVRGNTLAELGREFDLG 86

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSV 925
           D++    G            +A+  EA++GAL+LD  ++ A            +++    
Sbjct: 87  DYLKLGPGELKSGGFRRDSILADAVEAIIGALYLDSDLETARRIVLEWYQCRLEEIKPGA 146

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 147 SQKDPKTRLQEFLQGRRKPL 166


>gi|451936545|ref|YP_007460399.1| ribonuclease III [Candidatus Kinetoplastibacterium oncopeltii
           TCC290E]
 gi|451777468|gb|AGF48443.1| ribonuclease III [Candidatus Kinetoplastibacterium oncopeltii
           TCC290E]
          Length = 241

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 55/95 (57%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+V+ F  +I LF  + DI+EGGL+  RA++VQ   LA +A  + L  ++ 
Sbjct: 33  HNERLEFLGDSVLNFAITIFLFEKYADIDEGGLSRLRASLVQQNSLAIIASDLNLSKYLK 92

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
              G            +A+C EA+ GA+F D   +
Sbjct: 93  LGEGELKSGGCNRPSILADCLEAVFGAIFKDSSFN 127


>gi|398304079|ref|ZP_10507665.1| ribonuclease III [Bacillus vallismortis DV1-F-3]
          Length = 213

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/131 (35%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S  LF  +P + EG L   RAAIV    L  LA  +   D +L 
Sbjct: 22  NERLEFLGDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLL 81

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    +    +A+ FEA +GAL+LD G++  +      ++ K N+  F   M + 
Sbjct: 82  GKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVMDFK 141

Query: 942 QHPLQEQEPDG 952
               +  + DG
Sbjct: 142 SQLQEYVQRDG 152


>gi|330815986|ref|YP_004359691.1| Ribonuclease III [Burkholderia gladioli BSR3]
 gi|327368379|gb|AEA59735.1| Ribonuclease III [Burkholderia gladioli BSR3]
          Length = 403

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + +
Sbjct: 30  SATHNERLEFLGDSVLNCAVAALLFQRFSKLDEGDLSRVRANLVKQQSLYEIAQALNISE 89

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 90  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 133


>gi|170059808|ref|XP_001865523.1| zinc finger protein [Culex quinquefasciatus]
 gi|167878468|gb|EDS41851.1| zinc finger protein [Culex quinquefasciatus]
          Length = 275

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/41 (75%), Positives = 38/41 (92%)

Query: 876 LEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
           LE+FMLYAH SDLCH++EL+HA+ANCF AL+GAL LDGGI+
Sbjct: 9   LEEFMLYAHSSDLCHDLELRHALANCFVALIGALLLDGGIE 49


>gi|354584962|ref|ZP_09003853.1| ribonuclease III [Paenibacillus lactis 154]
 gi|353191079|gb|EHB56588.1| ribonuclease III [Paenibacillus lactis 154]
          Length = 233

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S  L+++FPD  EG L   RA+IV    L   A R+    ++L 
Sbjct: 44  NERLEFLGDAVLELTVSEFLYNLFPDRPEGELTKLRASIVCEPSLVQFALRLDFGRYVLL 103

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA-----DQVFSSV 925
             G ++         +A+ FE+ +GAL+LD G++       D VF S+
Sbjct: 104 GKGEEMTGGRTRPALLADVFESFVGALYLDQGLEAVRQFLHDHVFPSI 151


>gi|323702685|ref|ZP_08114346.1| ribonuclease III [Desulfotomaculum nigrificans DSM 574]
 gi|323532348|gb|EGB22226.1| ribonuclease III [Desulfotomaculum nigrificans DSM 574]
          Length = 204

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/97 (42%), Positives = 58/97 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HN+RLEFLGDAV+E + S +L+  FPD  EG L   RAA V    LA +A+ + L   + 
Sbjct: 3   HNQRLEFLGDAVLELLISEYLYQRFPDRTEGELTKMRAASVCEPSLAKVARGLDLGRCLR 62

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
              G +     E    +A+ FEAL+GA++LD G++ A
Sbjct: 63  MGRGEERSGGRERPSILADAFEALLGAIYLDHGLEAA 99


>gi|307260992|ref|ZP_07542674.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306869294|gb|EFN01089.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 243

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/97 (39%), Positives = 58/97 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ F     LF  FP   EG L+  RA +V+ Q LA LA++ GL ++M 
Sbjct: 53  NNERLEFLGDSILNFAIGKALFEKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMK 112

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
              G         +  +++C EA++ A++LD G+D A
Sbjct: 113 LGAGELKSGGYRRESILSDCVEAIIAAIYLDAGMDKA 149


>gi|307263177|ref|ZP_07544798.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|306871539|gb|EFN03262.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 243

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/97 (39%), Positives = 58/97 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ F     LF  FP   EG L+  RA +V+ Q LA LA++ GL ++M 
Sbjct: 53  NNERLEFLGDSILNFAIGKALFEKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMK 112

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
              G         +  +++C EA++ A++LD G+D A
Sbjct: 113 LGAGELKSGGYRRESILSDCVEAIIAAIYLDAGMDKA 149


>gi|158706440|sp|P0C5H7.1|DCL2_EMENI RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
          Length = 1429

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 109/254 (42%), Gaps = 46/254 (18%)

Query: 788  RRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFP 847
            R I FQ+ R        ++++ +   +A     T  +R EF GD+V++F  +  LF+  P
Sbjct: 883  RDIQFQDLR--------HVITAITMPLAQAP--TDYQRYEFFGDSVLKFTVAASLFYNNP 932

Query: 848  DIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM------------------LYAHGSDLC 889
            +  EG L     A+VQN  L   A   GL+ ++                  LYA  S   
Sbjct: 933  NWHEGYLTETLHALVQNARLTRAALDQGLDAYIISNRFTPRKWSAPLISEKLYASASTRS 992

Query: 890  HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQH--PLQE 947
               ++   +A+  EAL+GA ++DGG+  A             VRF   +  P+   P  E
Sbjct: 993  MSAKV---LADVVEALIGAAYIDGGLHKAQSCI---------VRFLPEIELPETKLPRPE 1040

Query: 948  QEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEF 1007
              P        + P L Q + LE   G  F    LL    T  S  Y + ++ S QRLEF
Sbjct: 1041 SMPMSKDH---KKPHLIQQENLENHIGYTFKDKTLLMEALTHPSCPY-DTSIQSYQRLEF 1096

Query: 1008 LGDTVLQLITSDYL 1021
            LGD VL ++  D +
Sbjct: 1097 LGDAVLDMLIVDLI 1110


>gi|438000104|ref|YP_007183837.1| ribonuclease III [Candidatus Kinetoplastibacterium blastocrithidii
           (ex Strigomonas culicis)]
 gi|451813034|ref|YP_007449487.1| ribonuclease III [Candidatus Kinetoplastibacterium blastocrithidii
           TCC012E]
 gi|429339338|gb|AFZ83760.1| ribonuclease III [Candidatus Kinetoplastibacterium blastocrithidii
           (ex Strigomonas culicis)]
 gi|451779003|gb|AGF49883.1| ribonuclease III [Candidatus Kinetoplastibacterium blastocrithidii
           TCC012E]
          Length = 236

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/107 (38%), Positives = 57/107 (53%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+V+ F  +I LF  + DI+EGGL+  RA +VQ   LA +A  + L  ++ 
Sbjct: 33  HNERLEFLGDSVLNFAITIFLFEKYSDIDEGGLSRLRARLVQQNSLATIASDLNLSRYLK 92

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 928
              G            +A+C EA+ GA+F D   + A  V      K
Sbjct: 93  LGDGELKSGGCNRPSILADCLEAVFGAVFKDSSFNEARIVIEKQFVK 139


>gi|28210930|ref|NP_781874.1| ribonuclease III [Clostridium tetani E88]
 gi|73917577|sp|Q895M9.1|RNC_CLOTE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|28203369|gb|AAO35811.1| ribonuclease III [Clostridium tetani E88]
          Length = 235

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 99/227 (43%), Gaps = 55/227 (24%)

Query: 731 HRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRI 790
           +  L  L+++I+ KF+N  LL +ALTH SY                              
Sbjct: 4   YMDLKDLQNKIEIKFENIKLLHIALTHSSY------------------------------ 33

Query: 791 HFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIE 850
              N +KR                     I +NERLEFLGD+V++ + + +LF  + D  
Sbjct: 34  --ANEKKR---------------------IQYNERLEFLGDSVLQLVITEYLFMNYKDKS 70

Query: 851 EGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALF 910
           EG L+  RA IV    L  +AK + L +++  + G +L    E    +A+  EAL+ +++
Sbjct: 71  EGELSKKRALIVCENSLFSIAKNLELGEYIKMSKGEELTGGRERISILADAVEALIASIY 130

Query: 911 LDGGIDVADQVFSSVLYKDNEVRFKQWMYYP-QHPLQE-QEPDGDRQ 955
           LD GIDV  +      Y   E   K  +    +  LQE  + DGD Q
Sbjct: 131 LDKGIDVVREFILKNFYNIVEKAMKDEIILDYKTKLQEIIQKDGDIQ 177



 Score = 42.4 bits (98), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 34/57 (59%)

Query: 966  LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            L+ L+    + F +I+LL    T  S       +  N+RLEFLGD+VLQL+ ++YL+
Sbjct: 7    LKDLQNKIEIKFENIKLLHIALTHSSYANEKKRIQYNERLEFLGDSVLQLVITEYLF 63


>gi|296331168|ref|ZP_06873642.1| ribonuclease III [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|296151812|gb|EFG92687.1| ribonuclease III [Bacillus subtilis subsp. spizizenii ATCC 6633]
          Length = 213

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/131 (35%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S  LF  +P + EG L   RAAIV    L  LA  +   D +L 
Sbjct: 22  NERLEFLGDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLL 81

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G ++    +    +A+ FEA +GAL+LD G++  +      ++ K N+  F   M + 
Sbjct: 82  GKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVMDFK 141

Query: 942 QHPLQEQEPDG 952
               +  + DG
Sbjct: 142 SQLQEYVQRDG 152


>gi|433647037|ref|YP_007292039.1| ribonuclease III [Mycobacterium smegmatis JS623]
 gi|433296814|gb|AGB22634.1| ribonuclease III [Mycobacterium smegmatis JS623]
          Length = 230

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 24/173 (13%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI---GLEDF 879
           NERLEFLGDAV+    +  L+H  PD  EG LA  RA+IV  Q LA + + +   GL  +
Sbjct: 39  NERLEFLGDAVLGLTITEELYHRHPDRSEGDLAKLRASIVNTQALADVGRHLTDDGLGAY 98

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSVL--------- 926
           +L   G +     +    +A+  E+L+GA++L+ GI VA  V    FS++L         
Sbjct: 99  LLLGKGEEHSGGADKSSILADGVESLLGAIYLEHGIAVARDVIMRLFSTLLDTAPTLGAG 158

Query: 927 --YKDN--EVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGV 975
             +K +  E+   + M  P + +    PD D+++     + +    +EY  G+
Sbjct: 159 LDWKSSLQELTASRGMGVPSYVVTSTGPDHDKEFTATVIVTE----VEYGKGI 207


>gi|419846067|ref|ZP_14369324.1| ribonuclease III [Haemophilus parainfluenzae HK2019]
 gi|386414362|gb|EIJ28918.1| ribonuclease III [Haemophilus parainfluenzae HK2019]
          Length = 227

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 58/103 (56%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ ++ +  L+H FP   EG L+  RA +V+   LA +A+   L D+M 
Sbjct: 34  HNERLEFLGDSILNYVIADALYHQFPRCNEGELSRMRATLVREPTLAMIARNFELGDYMS 93

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS 924
              G         +  +A+C EA++GA+ LD   D A  +  S
Sbjct: 94  LGSGELKSGGFRRESILADCVEAVIGAMALDSSFDKAADIVRS 136


>gi|365154598|ref|ZP_09351029.1| ribonuclease 3 [Campylobacter sp. 10_1_50]
 gi|363649573|gb|EHL88682.1| ribonuclease 3 [Campylobacter sp. 10_1_50]
          Length = 223

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/130 (31%), Positives = 74/130 (56%), Gaps = 8/130 (6%)

Query: 805 NIMSKLGRKVATESNITH--------NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
           N+  K  +    E  +TH        NERLEFLGDAV++ + + +LF  F  I EG ++ 
Sbjct: 10  NLGYKFKQSELLEEALTHKSTKQALNNERLEFLGDAVMDLLVAEYLFKKFSKIAEGDMSK 69

Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
            RAA+V  +  A++++R+ + +F+  +   +     E    +++ FEA+MGA++L+ G+D
Sbjct: 70  LRAALVNEKSFANMSRRLKMGEFLRLSQAEENNGGREKDSILSDAFEAVMGAIYLEAGLD 129

Query: 917 VADQVFSSVL 926
              ++  S+L
Sbjct: 130 KVREISISLL 139


>gi|340788054|ref|YP_004753519.1| ribonuclease III [Collimonas fungivorans Ter331]
 gi|340553321|gb|AEK62696.1| Ribonuclease III [Collimonas fungivorans Ter331]
          Length = 333

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/104 (37%), Positives = 58/104 (55%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++  + +  LF  +  I+EG L+  RA +V+ Q L  +A+R+ L  F+ 
Sbjct: 33  HNERLEFLGDSILNCVVASLLFDRYTKIDEGDLSRVRANLVKQQSLYEIAQRLELSQFLR 92

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSV 925
              G            +A+  EAL GA+FLD G D A  V  ++
Sbjct: 93  LGEGELKSGGFRRPSILADTLEALFGAIFLDAGFDAARDVIRAL 136


>gi|88858204|ref|ZP_01132846.1| RNase III, dsRNA [Pseudoalteromonas tunicata D2]
 gi|88819821|gb|EAR29634.1| RNase III, dsRNA [Pseudoalteromonas tunicata D2]
          Length = 225

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 56/103 (54%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ F+ +  L+  FP   EG L+  R+ +V+ Q LA       L D++ 
Sbjct: 35  HNERLEFLGDSILSFVIANELYKRFPKSREGDLSRMRSTLVRGQTLAEFGLEFNLGDYLR 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS 924
              G         +  +A+  EA++GA+FLD GID    +  S
Sbjct: 95  LGPGELKSGGYRRESTLADAVEAIIGAVFLDSGIDTCSNLILS 137


>gi|307247515|ref|ZP_07529560.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|307249746|ref|ZP_07531725.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|307254355|ref|ZP_07536193.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258813|ref|ZP_07540545.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306856018|gb|EFM88176.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|306858254|gb|EFM90331.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306862654|gb|EFM94610.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867164|gb|EFM99020.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 243

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/97 (39%), Positives = 58/97 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ F     LF  FP   EG L+  RA +V+ Q LA LA++ GL ++M 
Sbjct: 53  NNERLEFLGDSILNFAIGKALFEKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMK 112

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
              G         +  +++C EA++ A++LD G+D A
Sbjct: 113 LGAGELKSGGYRRESILSDCVEAIIAAIYLDAGMDKA 149


>gi|303251584|ref|ZP_07337758.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|302649582|gb|EFL79764.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 223

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/97 (39%), Positives = 58/97 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ F     LF  FP   EG L+  RA +V+ Q LA LA++ GL ++M 
Sbjct: 33  NNERLEFLGDSILNFAIGKALFEKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMK 92

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
              G         +  +++C EA++ A++LD G+D A
Sbjct: 93  LGAGELKSGGYRRESILSDCVEAIIAAIYLDAGMDKA 129


>gi|428218705|ref|YP_007103170.1| RNAse III [Pseudanabaena sp. PCC 7367]
 gi|427990487|gb|AFY70742.1| RNAse III [Pseudanabaena sp. PCC 7367]
          Length = 221

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 10/134 (7%)

Query: 815 ATESNIT--HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAK 872
           A E+N+   +N+RLEFLGDAVV+F+    L+H +  + EG L   R+ +V   +LA LA 
Sbjct: 26  AYENNLVAVNNQRLEFLGDAVVDFVVGEMLYHCYAQMAEGELTRRRSMLVDETNLARLAN 85

Query: 873 RIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA----DQVFSSVLYK 928
           +I L + +    G+DL         +++ FEA++GA +LD G        + +F+ +L  
Sbjct: 86  QINLGEKLKLGKGTDLSGGRRSPSILSDAFEAVIGAYYLDSGFAAVKIYLEGLFAPILET 145

Query: 929 DNEVR----FKQWM 938
              V     F+QW+
Sbjct: 146 TRVVNSKSMFQQWV 159


>gi|330466266|ref|YP_004404009.1| ribonuclease iii [Verrucosispora maris AB-18-032]
 gi|328809237|gb|AEB43409.1| ribonuclease iii [Verrucosispora maris AB-18-032]
          Length = 287

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/102 (39%), Positives = 62/102 (60%), Gaps = 3/102 (2%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI---GLEDF 879
           NERLEFLGD+V+  + +  LFH  PD+ EG LA  RA++V  + LA +A+ +   GL  +
Sbjct: 46  NERLEFLGDSVLGVVITTALFHNHPDLPEGQLAKLRASVVNMRALADVARGLGPDGLGPY 105

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           +L   G +     +    +A+  EAL+GA++L  G+D A +V
Sbjct: 106 LLLGKGEETTGGRDKASILADTLEALLGAIYLQYGLDTAAEV 147



 Score = 43.9 bits (102), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 968  YLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            +LE + GV  +   LL R  T RS  Y N  L +N+RLEFLGD+VL ++ +  L+
Sbjct: 13   HLEAAFGVSMDP-ELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALF 66


>gi|126208025|ref|YP_001053250.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
 gi|189043287|sp|A3MZQ9.1|RNC_ACTP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|126096817|gb|ABN73645.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
          Length = 223

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/97 (39%), Positives = 58/97 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ F     LF  FP   EG L+  RA +V+ Q LA LA++ GL ++M 
Sbjct: 33  NNERLEFLGDSILNFAIGKALFEKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMR 92

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
              G         +  +++C EA++ A++LD G+D A
Sbjct: 93  LGAGELKSGGYRRESILSDCVEAIIAAIYLDAGMDKA 129


>gi|420157038|ref|ZP_14663878.1| ribonuclease III [Clostridium sp. MSTE9]
 gi|394757048|gb|EJF40107.1| ribonuclease III [Clostridium sp. MSTE9]
          Length = 229

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 10/171 (5%)

Query: 791 HFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIE 850
           HFQN +      LI  M+        +S    NERLEFLGD+V+  + + +LF   P++ 
Sbjct: 16  HFQNPQ-----YLITAMTHSSYANEVKSGGHSNERLEFLGDSVLSIVVADYLFKHCPNLP 70

Query: 851 EGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALF 910
           EG L   RAA+V  + L   ++++GL +++L + G       +    +A+ FEAL+ A++
Sbjct: 71  EGELTKNRAALVCEKALCGFSRQLGLGEYLLLSRGEQNSGGRQRSSILADAFEALIAAIY 130

Query: 911 LDGGIDVADQVF----SSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWV 957
           LD G++ A +        VL       FK +    Q  +Q Q P+   ++V
Sbjct: 131 LDAGLEKAREFILRFVLPVLQTSRPKAFKDYKTSLQEIIQ-QNPEEQLEYV 180


>gi|388456739|ref|ZP_10139034.1| ribonuclease III [Fluoribacter dumoffii Tex-KL]
          Length = 225

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 57/102 (55%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           ER EFLGD+++ F+ +  LFH FP   EG L+  R+ +V+ + L  LAK I L DF+   
Sbjct: 37  ERFEFLGDSILSFVIANELFHRFPMQSEGQLSRLRSFLVRGEMLVELAKEIELGDFLYLG 96

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSV 925
            G            +++  EA+  A+FLDGGI  A +V  S+
Sbjct: 97  QGELKSGGFRRASILSDAMEAVFAAIFLDGGIGPAKEVILSL 138


>gi|387771311|ref|ZP_10127477.1| ribonuclease III [Pasteurella bettyae CCUG 2042]
 gi|386902516|gb|EIJ67356.1| ribonuclease III [Pasteurella bettyae CCUG 2042]
          Length = 224

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 797 KRGINTLINIMSKLGRKVATESNIT-HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLA 855
           +R IN     ++ L + +   S  T HNERLEFLGDA++ +  +  L+H FP   EG L+
Sbjct: 8   QRHINYQFKDVALLKQALTHRSAATKHNERLEFLGDAILNYTIADALYHQFPHCNEGELS 67

Query: 856 TYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGI 915
             RA +V+   LA LA++  L +++L   G         +  +A+C EA++GA+ LD  +
Sbjct: 68  RMRATLVREPTLAILARQFELGEYLLLGQGELKSGGFRRESILADCVEAIIGAISLDSNL 127

Query: 916 DVADQ 920
             A Q
Sbjct: 128 TTATQ 132


>gi|333371186|ref|ZP_08463148.1| ribonuclease III [Desmospora sp. 8437]
 gi|332976630|gb|EGK13471.1| ribonuclease III [Desmospora sp. 8437]
          Length = 231

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 54/94 (57%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S HL+H FP ++EG L   RA IV    LA  A+ +     +  
Sbjct: 42  NERLEFLGDAVLELTVSEHLYHRFPHLKEGDLTRMRARIVCEPSLASFARDLNFGKHVRL 101

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
             G +L         +A+ FEA +GAL+L+ G+D
Sbjct: 102 GKGEELTGGRNRPALLADVFEAFIGALYLEKGLD 135


>gi|303252175|ref|ZP_07338343.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|302648958|gb|EFL79146.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
          Length = 223

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/97 (39%), Positives = 58/97 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ F     LF  FP   EG L+  RA +V+ Q LA LA++ GL ++M 
Sbjct: 33  NNERLEFLGDSILNFAIGKALFEKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMK 92

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
              G         +  +++C EA++ A++LD G+D A
Sbjct: 93  LGAGELKSGGYRRESILSDCVEAIIAAIYLDAGMDKA 129


>gi|314933411|ref|ZP_07840776.1| ribonuclease III [Staphylococcus caprae C87]
 gi|313653561|gb|EFS17318.1| ribonuclease III [Staphylococcus caprae C87]
          Length = 245

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 58/108 (53%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + HNERLEFLGDAV+E   S +LF   P + EG L   RA IV    L   A +I L + 
Sbjct: 52  LDHNERLEFLGDAVLELTVSRYLFDKHPHLPEGNLTKMRATIVCEPSLVIFANKIDLNEL 111

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           +L   G +          +++ FEA +GAL+LD G+D   +    V++
Sbjct: 112 ILLGKGEEKTGGRTRPSLISDAFEAFVGALYLDQGLDTVWKFAEKVIF 159


>gi|227432061|ref|ZP_03914075.1| dsRNA-specific ribonuclease [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352178|gb|EEJ42390.1| dsRNA-specific ribonuclease [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 236

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 60/104 (57%)

Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
           +RLEFLGD+V++ I + +LF  +PD  EG L   R A+VQ +  AH ++ + L + +   
Sbjct: 46  QRLEFLGDSVMQMIVAEYLFKRYPDWHEGQLTEMRIAMVQTRSFAHFSRMVHLNEGIRLG 105

Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
            G ++    +    + + +EA +GAL+LD G DV  Q  +  L+
Sbjct: 106 KGEEMSGARDRDSLLEDIWEAFIGALYLDQGADVVRQFLNQTLF 149


>gi|170695422|ref|ZP_02886567.1| Ribonuclease III [Burkholderia graminis C4D1M]
 gi|170139613|gb|EDT07796.1| Ribonuclease III [Burkholderia graminis C4D1M]
          Length = 421

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 57/102 (55%)

Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
           THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + + +
Sbjct: 32  THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISEGL 91

Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
               G            +A+  EA++GA+FLDGG D A  V 
Sbjct: 92  RLGEGELRSGGFRRPSILADTLEAVLGAVFLDGGFDAAQTVI 133


>gi|159036823|ref|YP_001536076.1| ribonuclease III [Salinispora arenicola CNS-205]
 gi|157915658|gb|ABV97085.1| Ribonuclease III [Salinispora arenicola CNS-205]
          Length = 252

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/102 (39%), Positives = 61/102 (59%), Gaps = 3/102 (2%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI---GLEDF 879
           NERLEFLGD+V+  + +  LFH  PD+ EG LA  RA++V  + LA +A+ +   GL  +
Sbjct: 46  NERLEFLGDSVLGVVITTALFHNHPDLPEGQLAKLRASVVNMRALAEVARALGPTGLGPY 105

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
           +L   G +     +    +A+  EAL+GA++L  G+D A  V
Sbjct: 106 LLLGKGEETTGGRDKASILADTLEALLGAIYLQCGLDTAATV 147



 Score = 44.7 bits (104), Expect = 0.30,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 968  YLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            +LE + GV  +   LL R  T RS  Y N  L +N+RLEFLGD+VL ++ +  L+
Sbjct: 13   HLEAAFGVALDP-ELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALF 66


>gi|268318202|ref|YP_003291921.1| ribonuclease III [Rhodothermus marinus DSM 4252]
 gi|262335736|gb|ACY49533.1| ribonuclease III [Rhodothermus marinus DSM 4252]
          Length = 260

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/102 (38%), Positives = 63/102 (61%)

Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
           +S++  NERLEFLGDAV+ F+ + +L+  FPD  EG L   RA +V  + LA  A+R+GL
Sbjct: 58  DSHLHSNERLEFLGDAVLGFVVAAYLYEHFPDRNEGFLTRLRAKLVNREALAQAARRLGL 117

Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
              +  +   +     +    +++ FEAL+GA++LD G++ A
Sbjct: 118 GAHVRLSENMERAGGRDNDSILSDAFEALVGAIYLDLGLEAA 159


>gi|90101642|sp|Q57LD0.2|RNC_SALCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 226

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 58/101 (57%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ F+ +  L+H FP ++EG ++  RA +V+   LA LA+   L + + 
Sbjct: 36  HNERLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLR 95

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
              G         +  +A+  EAL+G +FLD  I   +Q+ 
Sbjct: 96  LGPGELKSGGFRRESILADTMEALIGGVFLDSNIQTVEQLI 136


>gi|431806995|ref|YP_007233893.1| ribonuclease III [Brachyspira pilosicoli P43/6/78]
 gi|430780354|gb|AGA65638.1| ribonuclease III [Brachyspira pilosicoli P43/6/78]
          Length = 229

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 72/119 (60%), Gaps = 2/119 (1%)

Query: 812 RKVATES-NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
           R  A E+ N+ +N+RLEFLGD+V+  I S H++  + +++EG L+  +A +V    LA +
Sbjct: 30  RTFANENGNMKYNQRLEFLGDSVLSLIISEHIYKEYNNVKEGKLSKIKAYLVSQNTLASI 89

Query: 871 AKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 929
           ++++ L DF+L   G +     E  + + + FEA++GA++LD  ++     F   +YKD
Sbjct: 90  SRKLKLGDFLLLGKGEEASGGRERDNMLEDLFEAIIGAIYLDSNLENTKN-FVMRVYKD 147



 Score = 42.0 bits (97), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 962  LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 1021
            LL   + L+YS    F +   L    T R+    N  +  NQRLEFLGD+VL LI S+++
Sbjct: 6    LLDCEKVLQYS----FKNKNYLLEAITHRTFANENGNMKYNQRLEFLGDSVLSLIISEHI 61

Query: 1022 Y 1022
            Y
Sbjct: 62   Y 62


>gi|434381810|ref|YP_006703593.1| ribonuclease III [Brachyspira pilosicoli WesB]
 gi|404430459|emb|CCG56505.1| ribonuclease III [Brachyspira pilosicoli WesB]
          Length = 229

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 72/119 (60%), Gaps = 2/119 (1%)

Query: 812 RKVATES-NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
           R  A E+ N+ +N+RLEFLGD+V+  I S H++  + +++EG L+  +A +V    LA +
Sbjct: 30  RTFANENGNMKYNQRLEFLGDSVLSLIISEHIYKEYNNVKEGKLSKIKAYLVSQNTLASI 89

Query: 871 AKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 929
           ++++ L DF+L   G +     E  + + + FEA++GA++LD  ++     F   +YKD
Sbjct: 90  SRKLKLGDFLLLGKGEEASGGRERDNMLEDLFEAIIGAIYLDSNLENTKN-FVMRVYKD 147



 Score = 42.0 bits (97), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 962  LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 1021
            LL   + L+YS    F +   L    T R+    N  +  NQRLEFLGD+VL LI S+++
Sbjct: 6    LLDCEKVLQYS----FKNKNYLLEAITHRTFANENGNMKYNQRLEFLGDSVLSLIISEHI 61

Query: 1022 Y 1022
            Y
Sbjct: 62   Y 62


>gi|421478281|ref|ZP_15926046.1| ribonuclease III, partial [Burkholderia multivorans CF2]
 gi|400224988|gb|EJO55178.1| ribonuclease III, partial [Burkholderia multivorans CF2]
          Length = 368

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 59/104 (56%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           + THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + +
Sbjct: 30  SATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISE 89

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
            +    G            +A+ FEA++GA+FLDGG + A  V 
Sbjct: 90  GLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVI 133


>gi|357040499|ref|ZP_09102286.1| Ribonuclease 3 [Desulfotomaculum gibsoniae DSM 7213]
 gi|355356590|gb|EHG04376.1| Ribonuclease 3 [Desulfotomaculum gibsoniae DSM 7213]
          Length = 246

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 59/100 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDAV+E I S + +  FP   EG L   RA  V    LA +A+R+ L  ++ 
Sbjct: 45  NNERLEFLGDAVLELIISDYYYRSFPHKTEGELTKMRALTVCEPSLATVARRLELGRYLF 104

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
              G +     E    +A+ FEAL+G+++LD G++ A +V
Sbjct: 105 MGRGEERSGGRERPSLLADAFEALLGSVYLDAGLEEARRV 144


>gi|325091272|gb|EGC44582.1| ATP-dependent helicase DCL1 [Ajellomyces capsulatus H88]
          Length = 1432

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 101/229 (44%), Gaps = 41/229 (17%)

Query: 824  ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM--- 880
            ERLEFLGD  ++  TSI LF + PD +E      R  ++ NQ+L + A R+ L +F+   
Sbjct: 1008 ERLEFLGDCFLKMATSISLFAMNPDNDEFDFHVKRMCLICNQNLFNTAVRLKLYEFVRTQ 1067

Query: 881  ------LYAHGSDLCH------EVELKHAM-----ANCFEALMGALFLDGG----IDVAD 919
                   Y  G  L          + K A+     A+  EAL+GA  L GG     D A 
Sbjct: 1068 GFSRRNWYPEGIKLLQGKAKSESAQNKQALGDKTIADICEALIGASLLSGGKACRFDTAV 1127

Query: 920  QVFSSVLYKDNEVRFKQWMYY------PQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSS 973
            +  +  +  DN  R   W  Y      P + + + +         Q  L KQ+       
Sbjct: 1128 KAVTVFVDSDNH-RVSDWNSYIDLYSLPSYQIVQADAG-------QLDLAKQIG---NRL 1176

Query: 974  GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            G  F + RLL   FT  S      T+   QRLEFLGD++L ++  +YLY
Sbjct: 1177 GYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLY 1225



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 26/135 (19%)

Query: 818  SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
            S +   +RLEFLGD++++ +   +L+H +PD +   L  ++ A+V N+ L  +  ++GL 
Sbjct: 1200 STVPCYQRLEFLGDSLLDMVCVEYLYHHYPDRDPQWLTEHKMAMVSNKFLGAVTVKLGLH 1259

Query: 878  DFMLYAHGSDL------CHEVELKHA------------------MANCFEALMGALFLDG 913
              +LY   +          E+E+  A                  + +  EA +GA+F+D 
Sbjct: 1260 KHLLYISNALFGQITRYAEEIEVAVAESADSPDAWTTTSDPPKCLPDMLEAYIGAIFVDS 1319

Query: 914  --GIDVADQVFSSVL 926
                +V +  F   L
Sbjct: 1320 NFSFEVVEDFFQRYL 1334


>gi|307718753|ref|YP_003874285.1| hypothetical protein STHERM_c10670 [Spirochaeta thermophila DSM
           6192]
 gi|306532478|gb|ADN02012.1| hypothetical protein STHERM_c10670 [Spirochaeta thermophila DSM
           6192]
          Length = 194

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/96 (38%), Positives = 59/96 (61%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+    + +L+  FP+ +EG LA  ++ +V    L  +A+RI +++F+L 
Sbjct: 4   NERLEFLGDAVLGLAVADYLYRTFPEKQEGELARIKSFVVSEDTLYEIARRIKVDNFILI 63

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
           + G +       K  +A+  EA++GA FLD G + A
Sbjct: 64  SKGEEYAGGRTKKALLADAMEAIIGAYFLDAGFEAA 99


>gi|315652049|ref|ZP_07905050.1| ribonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
 gi|315485696|gb|EFU76077.1| ribonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
          Length = 228

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 94/221 (42%), Gaps = 53/221 (23%)

Query: 731 HRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRI 790
           + +LN L++ + Y+++NR LL+ ALTH SY                              
Sbjct: 2   NNNLNELQELLGYEYKNRELLKQALTHSSY------------------------------ 31

Query: 791 HFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIE 850
              N  + G N                     NERLEFLGDAV+E ++S   + V+PD  
Sbjct: 32  --ANEHQLGKNG-------------------SNERLEFLGDAVLELVSSEFFYEVYPDKP 70

Query: 851 EGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALF 910
           EG L   RA+ V    L   A  I L +F+    G +          +++ FEA++G+++
Sbjct: 71  EGELTKIRASFVCEPALVDCAGNIRLSEFIRLGKGEEHTGGRFRPSIISDTFEAVIGSIY 130

Query: 911 LDGGIDVADQVFSSVLYK--DNEVRFKQWMYYPQHPLQEQE 949
           LDGG   A +V    +    +N+V F       Q  +Q Q+
Sbjct: 131 LDGGFANAKEVILKFILNGYENKVFFYDSKTILQEIIQSQD 171


>gi|146281615|ref|YP_001171768.1| ribonuclease III [Pseudomonas stutzeri A1501]
 gi|145569820|gb|ABP78926.1| ribonuclease III [Pseudomonas stutzeri A1501]
          Length = 208

 Score = 75.5 bits (184), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/99 (40%), Positives = 59/99 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDA++ F+    LF+ FP   EG L+  RA +V+ + LA LA+   L D + 
Sbjct: 14  NNERLEFLGDAILNFVAGEALFNHFPQAREGQLSRLRARLVKGETLAVLARGFELGDHLR 73

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ 920
              G         +  +A+  EAL+GA++LD G+DVA +
Sbjct: 74  LGSGELKSGGYRRESILADTLEALIGAIYLDAGMDVARE 112


>gi|397670033|ref|YP_006511568.1| ribonuclease III [Propionibacterium propionicum F0230a]
 gi|395142645|gb|AFN46752.1| ribonuclease III [Propionibacterium propionicum F0230a]
          Length = 213

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 17/152 (11%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           I  NERLEFLGDAV++ + + H+F  FPD+ EG LA  RA++V +  LA +A+ + L + 
Sbjct: 22  IPSNERLEFLGDAVLQIVVTEHIFRSFPDLAEGQLAKLRASVVSSHALAEVARGLDLGEL 81

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA---------DQVFSSVL---Y 927
           +    G       +    +A+  EA++GA+ +  G D A         +++ SS L   Y
Sbjct: 82  IRLGQGEINTGGADKTSILADTMEAVIGAIHMSCGADAAACFVHALLDERIASSELKGHY 141

Query: 928 KDNEVRFKQWMYY-----PQHPLQEQEPDGDR 954
            D +   +++  +     P++ +  + PD  R
Sbjct: 142 TDYKTALQEYCAHSGLEPPRYEIVGEGPDHQR 173



 Score = 42.7 bits (99), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 29/42 (69%)

Query: 981  RLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            +L    FT RS  + +  + SN+RLEFLGD VLQ++ +++++
Sbjct: 4    QLFELAFTHRSFAFEHGRIPSNERLEFLGDAVLQIVVTEHIF 45


>gi|386714302|ref|YP_006180625.1| ribonuclease III [Halobacillus halophilus DSM 2266]
 gi|384073858|emb|CCG45351.1| ribonuclease III [Halobacillus halophilus DSM 2266]
          Length = 230

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 55/94 (58%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +L+  +PD+ EG L  +RA+IV    L   AK +   + +L 
Sbjct: 42  NERLEFLGDAVLELGVSQYLYREYPDMAEGELTKFRASIVCEASLVDFAKDLNFHELILL 101

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
             G +L         +A+ FEA +GAL+LD G +
Sbjct: 102 GKGEELTGGRNRPALLADVFEAFIGALYLDQGFE 135


>gi|251781986|ref|YP_002996288.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|408401236|ref|YP_006859199.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
           RE378]
 gi|410494313|ref|YP_006904159.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
           AC-2713]
 gi|417752716|ref|ZP_12400893.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
           SK1249]
 gi|417928266|ref|ZP_12571654.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
           SK1250]
 gi|242390615|dbj|BAH81074.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|333771523|gb|EGL48458.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
           SK1249]
 gi|340766140|gb|EGR88666.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
           SK1250]
 gi|407967464|dbj|BAM60702.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
           RE378]
 gi|410439473|emb|CCI62101.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
           AC-2713]
          Length = 230

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/108 (35%), Positives = 60/108 (55%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDAV++ I S +LF  +P   EG ++  R+ IV+ + LA  ++    + 
Sbjct: 39  NISHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDT 98

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           ++    G +          + + FEA +GAL LD G+D   +    V+
Sbjct: 99  YIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGVDEVRRFLQQVM 146



 Score = 43.1 bits (100), Expect = 0.81,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 7/65 (10%)

Query: 963  LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 1017
            +K+L+ L  +S  + F    LL   FT  S  Y N    L +  N+RLEFLGD VLQLI 
Sbjct: 1    MKKLEELLAASFDICFEDHTLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLII 58

Query: 1018 SDYLY 1022
            S+YL+
Sbjct: 59   SEYLF 63


>gi|398994617|ref|ZP_10697516.1| ribonuclease III [Pseudomonas sp. GM21]
 gi|398131938|gb|EJM21234.1| ribonuclease III [Pseudomonas sp. GM21]
          Length = 208

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 59/99 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDA++ F+    LF  FP   EG L+  RA +V+ + LA LA+   L D++ 
Sbjct: 14  NNERLEFLGDAILNFVAGEALFDRFPLAREGQLSRLRARLVKGETLAVLARGFDLGDYLR 73

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ 920
              G         +  +A+  EAL+GA++LD G+D+A +
Sbjct: 74  LGSGELKSGGFRRESILADALEALIGAIYLDAGMDMARE 112


>gi|398853011|ref|ZP_10609647.1| ribonuclease III [Pseudomonas sp. GM80]
 gi|398990047|ref|ZP_10693256.1| ribonuclease III [Pseudomonas sp. GM24]
 gi|399011445|ref|ZP_10713777.1| ribonuclease III [Pseudomonas sp. GM16]
 gi|398118187|gb|EJM07927.1| ribonuclease III [Pseudomonas sp. GM16]
 gi|398145468|gb|EJM34250.1| ribonuclease III [Pseudomonas sp. GM24]
 gi|398242206|gb|EJN27827.1| ribonuclease III [Pseudomonas sp. GM80]
          Length = 208

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 59/99 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDA++ F+    LF  FP   EG L+  RA +V+ + LA LA+   L D++ 
Sbjct: 14  NNERLEFLGDAILNFVAGEALFDRFPLAREGQLSRLRARLVKGETLAVLARGFDLGDYLR 73

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ 920
              G         +  +A+  EAL+GA++LD G+D+A +
Sbjct: 74  LGSGELKSGGFRRESILADALEALIGAIYLDAGMDMARE 112


>gi|388543300|ref|ZP_10146591.1| ribonuclease III [Pseudomonas sp. M47T1]
 gi|388278612|gb|EIK98183.1| ribonuclease III [Pseudomonas sp. M47T1]
          Length = 229

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 59/99 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDA++ F+    LF  FP   EG L+  RA +V+ + LA LA+   L +++ 
Sbjct: 35  NNERLEFLGDAILNFVAGESLFERFPQAREGQLSRLRARLVKGETLAVLARGFDLGEYLR 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ 920
              G         +  +A+  EAL+GA++LD G+DVA +
Sbjct: 95  LGSGELKSGGFRRESILADALEALIGAIYLDAGMDVARE 133


>gi|312959172|ref|ZP_07773691.1| Ribonuclease 3 [Pseudomonas fluorescens WH6]
 gi|311286942|gb|EFQ65504.1| Ribonuclease 3 [Pseudomonas fluorescens WH6]
          Length = 229

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/110 (36%), Positives = 63/110 (57%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDA++ F+    LF  FP   EG L+  RA +V+ + LA LA+  GL +++ 
Sbjct: 35  NNERLEFLGDAILNFVAGEALFERFPQAREGQLSRLRARLVKGETLAVLARGFGLGEYLR 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
              G         +  +A+  EAL+GA++LD G++ A    ++ L  + E
Sbjct: 95  LGSGELKSGGFRRESILADALEALIGAIYLDAGMEAAKARVTAWLTSEIE 144


>gi|190149854|ref|YP_001968379.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|189914985|gb|ACE61237.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
          Length = 226

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/97 (39%), Positives = 58/97 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ F     LF  FP   EG L+  RA +V+ Q LA LA++ GL ++M 
Sbjct: 36  NNERLEFLGDSILNFAIGKALFEKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMK 95

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
              G         +  +++C EA++ A++LD G+D A
Sbjct: 96  LGAGELKSGGYRRESILSDCVEAIIAAIYLDAGMDKA 132


>gi|376261061|ref|YP_005147781.1| ribonuclease III [Clostridium sp. BNL1100]
 gi|373945055|gb|AEY65976.1| ribonuclease III [Clostridium sp. BNL1100]
          Length = 236

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/99 (40%), Positives = 59/99 (59%)

Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
           + +NERLEFLGD+V+    S +LF   P++ EG L+  RA IV    L+  A  I L  +
Sbjct: 45  LKYNERLEFLGDSVLGLTISEYLFQKRPNLPEGELSVTRAKIVCENSLSQCATDISLGKY 104

Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
           +L   G +L    E    +++ FEAL+GAL++DGG + A
Sbjct: 105 LLLGKGEELSGGREKISLLSDAFEALIGALYIDGGFETA 143


>gi|417333197|ref|ZP_12116833.1| Ribonuclease 3 [Salmonella enterica subsp. enterica serovar Alachua
           str. R6-377]
 gi|353579332|gb|EHC40904.1| Ribonuclease 3 [Salmonella enterica subsp. enterica serovar Alachua
           str. R6-377]
          Length = 204

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 58/101 (57%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ F+ +  L+H FP ++EG ++  RA +V+   LA LA+   L + + 
Sbjct: 14  HNERLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLR 73

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
              G         +  +A+  EAL+G +FLD  I   +Q+ 
Sbjct: 74  LGPGELKSGGFRRESILADTVEALIGGVFLDSNIQTVEQLI 114


>gi|312143881|ref|YP_003995327.1| ribonuclease III [Halanaerobium hydrogeniformans]
 gi|311904532|gb|ADQ14973.1| ribonuclease III [Halanaerobium hydrogeniformans]
          Length = 238

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/111 (36%), Positives = 60/111 (54%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           +I  NERLEFLGD+V+    S ++F+ F D  EG LA  RA +V    LA  AK++ L  
Sbjct: 44  SIKDNERLEFLGDSVLSLAVSTYIFNKFSDFPEGELAKMRAVVVSAPILAEAAKKLELGR 103

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 929
           ++    G ++    E    +A+  EA+ GAL+LD G   A      +L +D
Sbjct: 104 YLFLGKGEEMTGGRERDSILADSMEAIFGALYLDQGFTAASDFVLKILKED 154


>gi|310828474|ref|YP_003960831.1| ribonuclease III [Eubacterium limosum KIST612]
 gi|308740208|gb|ADO37868.1| ribonuclease III [Eubacterium limosum KIST612]
          Length = 222

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 1/112 (0%)

Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
           T+NERLEFLGDAV+E I S +L+  +  + EG +   R+ IV  + L+  A  + L ++M
Sbjct: 32  TNNERLEFLGDAVLELIISEYLYK-YNKLSEGKMTKIRSNIVCAESLSQAASDLNLGEYM 90

Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV 932
           L   G  +    + K  +AN FEA+MGA+FLD   D   +V    L K+ E+
Sbjct: 91  LLGKGEIVTGGRKRKSNLANAFEAVMGAVFLDSDYDTTKKVVLGTLEKNIEL 142


>gi|16765901|ref|NP_461516.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29140810|ref|NP_804152.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56412543|ref|YP_149618.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197361478|ref|YP_002141114.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205353677|ref|YP_002227478.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207857988|ref|YP_002244639.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|340000294|ref|YP_004731178.1| ribonuclease III [Salmonella bongori NCTC 12419]
 gi|378445997|ref|YP_005233629.1| RNase III [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|378451329|ref|YP_005238688.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|378700481|ref|YP_005182438.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|378989961|ref|YP_005253125.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
 gi|417325859|ref|ZP_12111710.1| Ribonuclease 3 [Salmonella enterica subsp. enterica serovar
           Adelaide str. A4-669]
 gi|417351122|ref|ZP_12129023.1| Ribonuclease 3 [Salmonella enterica subsp. enterica serovar
           Gaminara str. A4-567]
 gi|417375127|ref|ZP_12144683.1| Ribonuclease 3 [Salmonella enterica subsp. enterica serovar
           Inverness str. R8-3668]
 gi|417384966|ref|ZP_12150163.1| Ribonuclease 3 [Salmonella enterica subsp. enterica serovar
           Johannesburg str. S5-703]
 gi|417392733|ref|ZP_12155466.1| Ribonuclease 3 [Salmonella enterica subsp. enterica serovar
           Minnesota str. A4-603]
 gi|417477043|ref|ZP_12171357.1| Ribonuclease 3 [Salmonella enterica subsp. enterica serovar
           Rubislaw str. A4-653]
 gi|417512727|ref|ZP_12176966.1| Ribonuclease 3 [Salmonella enterica subsp. enterica serovar
           Senftenberg str. A4-543]
 gi|417533005|ref|ZP_12187189.1| Ribonuclease 3 [Salmonella enterica subsp. enterica serovar Urbana
           str. R8-2977]
 gi|418815260|ref|ZP_13370765.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Newport str. CVM 21538]
 gi|418819605|ref|ZP_13375053.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Newport str. CVM 22425]
 gi|419729130|ref|ZP_14256090.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. 41579]
 gi|419734452|ref|ZP_14261343.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. 41563]
 gi|419740871|ref|ZP_14267588.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. 41573]
 gi|419742671|ref|ZP_14269343.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. 41566]
 gi|419751282|ref|ZP_14277706.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. 41565]
 gi|421356988|ref|ZP_15807301.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 622731-39]
 gi|421361442|ref|ZP_15811706.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 639016-6]
 gi|421367195|ref|ZP_15817396.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 640631]
 gi|421372627|ref|ZP_15822775.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 77-0424]
 gi|421375797|ref|ZP_15825909.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 607307-6]
 gi|421381113|ref|ZP_15831169.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 485549-17]
 gi|421383793|ref|ZP_15833824.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 596866-22]
 gi|421388594|ref|ZP_15838582.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 596866-70]
 gi|421396355|ref|ZP_15846286.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 629164-26]
 gi|421397125|ref|ZP_15847047.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 629164-37]
 gi|421401816|ref|ZP_15851682.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 639672-46]
 gi|421408972|ref|ZP_15858769.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 639672-50]
 gi|421413652|ref|ZP_15863404.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 77-1427]
 gi|421415541|ref|ZP_15865267.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 77-2659]
 gi|421423677|ref|ZP_15873332.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 78-1757]
 gi|421424775|ref|ZP_15874413.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 22510-1]
 gi|421429294|ref|ZP_15878891.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 8b-1]
 gi|421433531|ref|ZP_15883090.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648905 5-18]
 gi|421438003|ref|ZP_15887507.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648901 6-18]
 gi|421446231|ref|ZP_15895647.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 50-3079]
 gi|421449661|ref|ZP_15899043.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 58-6482]
 gi|421571726|ref|ZP_16017395.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. CFSAN00322]
 gi|421573687|ref|ZP_16019320.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. CFSAN00325]
 gi|421581203|ref|ZP_16026750.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. CFSAN00326]
 gi|421582920|ref|ZP_16028450.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. CFSAN00328]
 gi|421885770|ref|ZP_16316955.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Senftenberg str. SS209]
 gi|422026876|ref|ZP_16373250.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm1]
 gi|422031913|ref|ZP_16378056.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm2]
 gi|427552728|ref|ZP_18928551.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm8]
 gi|427569433|ref|ZP_18933268.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm9]
 gi|427589600|ref|ZP_18938060.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm3]
 gi|427613010|ref|ZP_18942922.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm4]
 gi|427637291|ref|ZP_18947825.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm6]
 gi|427656905|ref|ZP_18952583.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm10]
 gi|427662161|ref|ZP_18957496.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm11]
 gi|427672970|ref|ZP_18962310.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm12]
 gi|436640939|ref|ZP_20516363.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 22704]
 gi|436664542|ref|ZP_20517248.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. SE30663]
 gi|436801647|ref|ZP_20525078.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CHS44]
 gi|436811101|ref|ZP_20530097.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1882]
 gi|436817088|ref|ZP_20534170.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1884]
 gi|436845547|ref|ZP_20538874.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1594]
 gi|436853413|ref|ZP_20543373.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1566]
 gi|436859497|ref|ZP_20547410.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1580]
 gi|436863670|ref|ZP_20549965.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1543]
 gi|436868495|ref|ZP_20553255.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1441]
 gi|436876349|ref|ZP_20557779.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1810]
 gi|436887221|ref|ZP_20563621.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1558]
 gi|436898862|ref|ZP_20570497.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1018]
 gi|436901200|ref|ZP_20572124.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1010]
 gi|436909346|ref|ZP_20576070.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1729]
 gi|436921280|ref|ZP_20583683.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_0895]
 gi|436929973|ref|ZP_20588484.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_0899]
 gi|436938131|ref|ZP_20593043.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1457]
 gi|436945396|ref|ZP_20597550.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1747]
 gi|436949562|ref|ZP_20599543.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_0968]
 gi|436960819|ref|ZP_20604456.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1444]
 gi|436967525|ref|ZP_20607356.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1445]
 gi|436983986|ref|ZP_20614306.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1559]
 gi|436991190|ref|ZP_20617369.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1565]
 gi|437007491|ref|ZP_20623344.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1808]
 gi|437016716|ref|ZP_20626132.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1811]
 gi|437033384|ref|ZP_20632578.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_0956]
 gi|437037861|ref|ZP_20634271.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1455]
 gi|437049567|ref|ZP_20640159.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1575]
 gi|437055787|ref|ZP_20643592.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1725]
 gi|437066462|ref|ZP_20649540.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1745]
 gi|437072881|ref|ZP_20652723.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1791]
 gi|437080704|ref|ZP_20657254.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1795]
 gi|437088833|ref|ZP_20661738.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 576709]
 gi|437111690|ref|ZP_20668277.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 635290-58]
 gi|437118497|ref|ZP_20670331.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 607308-16]
 gi|437133504|ref|ZP_20678477.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 607308-19]
 gi|437139547|ref|ZP_20681880.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 607307-2]
 gi|437143639|ref|ZP_20684463.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 607308-9]
 gi|437150040|ref|ZP_20688550.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 629163]
 gi|437164185|ref|ZP_20697068.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. SE15-1]
 gi|437170263|ref|ZP_20700320.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CVM_N202]
 gi|437179399|ref|ZP_20705358.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CVM_56-3991]
 gi|437186815|ref|ZP_20709743.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CVM_76-3618]
 gi|437221165|ref|ZP_20713008.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 13183-1]
 gi|437257545|ref|ZP_20715961.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CVM_81-2490]
 gi|437270320|ref|ZP_20723116.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. SL909]
 gi|437275101|ref|ZP_20725647.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. SL913]
 gi|437284120|ref|ZP_20729373.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CVM_69-4941]
 gi|437315503|ref|ZP_20737192.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 638970-15]
 gi|437330823|ref|ZP_20741850.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 17927]
 gi|437343058|ref|ZP_20745671.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CHS4]
 gi|437351390|ref|ZP_20747527.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 22558]
 gi|437429064|ref|ZP_20755599.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 543463 22-17]
 gi|437439288|ref|ZP_20757228.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 543463 40-18]
 gi|437461380|ref|ZP_20762329.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 561362 1-1]
 gi|437472135|ref|ZP_20765370.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 642044 4-1]
 gi|437489860|ref|ZP_20770642.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 642046 4-7]
 gi|437510750|ref|ZP_20776828.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648898 4-5]
 gi|437545764|ref|ZP_20783144.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648899 3-17]
 gi|437549619|ref|ZP_20783418.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648900 1-16]
 gi|437578380|ref|ZP_20791442.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648901 1-17]
 gi|437593549|ref|ZP_20795482.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648901 39-2]
 gi|437606044|ref|ZP_20799578.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648902 6-8]
 gi|437613265|ref|ZP_20801449.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648903 1-6]
 gi|437629117|ref|ZP_20806080.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648904 3-6]
 gi|437662315|ref|ZP_20813451.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 653049 13-19]
 gi|437676581|ref|ZP_20817042.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 642044 8-1]
 gi|437695035|ref|ZP_20822005.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 561362 9-7]
 gi|437713576|ref|ZP_20827456.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 543463 42-20]
 gi|437721384|ref|ZP_20829002.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648901 16-16]
 gi|437754783|ref|ZP_20834126.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 76-2651]
 gi|437806979|ref|ZP_20839656.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 33944]
 gi|437828659|ref|ZP_20844187.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. SARB17]
 gi|437974418|ref|ZP_20852958.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 50-5646]
 gi|438087735|ref|ZP_20859440.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 81-2625]
 gi|438096353|ref|ZP_20862121.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 62-1976]
 gi|438109224|ref|ZP_20867287.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 53-407]
 gi|440763159|ref|ZP_20942205.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Agona
           str. SH11G1113]
 gi|440766887|ref|ZP_20945873.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Agona
           str. SH08SF124]
 gi|440773586|ref|ZP_20952479.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Agona
           str. SH10GFN094]
 gi|445130587|ref|ZP_21381396.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9184]
 gi|445140277|ref|ZP_21384835.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Dublin str. SL1438]
 gi|445153848|ref|ZP_21391541.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Dublin str. HWS51]
 gi|445167963|ref|ZP_21394709.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. SE8a]
 gi|445195472|ref|ZP_21400456.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 20037]
 gi|445223570|ref|ZP_21403459.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. SE10]
 gi|445293419|ref|ZP_21411172.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 436]
 gi|445340222|ref|ZP_21416530.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 18569]
 gi|445344505|ref|ZP_21417681.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 13-1]
 gi|445360135|ref|ZP_21423368.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. PT23]
 gi|452123591|ref|YP_007473839.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Javiana str. CFSAN001992]
 gi|20141650|sp|Q56056.2|RNC_SALTY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|81360707|sp|Q5PIG5.1|RNC_SALPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226741376|sp|B5QTU8.1|RNC_SALEP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226741377|sp|B5RD49.1|RNC_SALG2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238689916|sp|B5BAT0.1|RNC_SALPK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|16421128|gb|AAL21475.1| RNase III, ds RNA [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29136435|gb|AAO68001.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56126800|gb|AAV76306.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197092954|emb|CAR58384.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205273458|emb|CAR38435.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206709791|emb|CAR34143.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|261247776|emb|CBG25604.1| RNase III [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|267994707|gb|ACY89592.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|332989508|gb|AEF08491.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
 gi|339513656|emb|CCC31411.1| ribonuclease III [Salmonella bongori NCTC 12419]
 gi|353569144|gb|EHC33814.1| Ribonuclease 3 [Salmonella enterica subsp. enterica serovar
           Gaminara str. A4-567]
 gi|353574840|gb|EHC37753.1| Ribonuclease 3 [Salmonella enterica subsp. enterica serovar
           Adelaide str. A4-669]
 gi|353597395|gb|EHC54132.1| Ribonuclease 3 [Salmonella enterica subsp. enterica serovar
           Inverness str. R8-3668]
 gi|353607189|gb|EHC61181.1| Ribonuclease 3 [Salmonella enterica subsp. enterica serovar
           Johannesburg str. S5-703]
 gi|353610884|gb|EHC63711.1| Ribonuclease 3 [Salmonella enterica subsp. enterica serovar
           Minnesota str. A4-603]
 gi|353638796|gb|EHC84263.1| Ribonuclease 3 [Salmonella enterica subsp. enterica serovar
           Rubislaw str. A4-653]
 gi|353638889|gb|EHC84318.1| Ribonuclease 3 [Salmonella enterica subsp. enterica serovar
           Senftenberg str. A4-543]
 gi|353661558|gb|EHD00848.1| Ribonuclease 3 [Salmonella enterica subsp. enterica serovar Urbana
           str. R8-2977]
 gi|379984674|emb|CCF89228.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Senftenberg str. SS209]
 gi|381293459|gb|EIC34616.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. 41573]
 gi|381297460|gb|EIC38550.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. 41579]
 gi|381297618|gb|EIC38706.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. 41563]
 gi|381304485|gb|EIC45469.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. 41565]
 gi|381313600|gb|EIC54382.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. 41566]
 gi|392792431|gb|EJA48889.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Newport str. CVM 21538]
 gi|392794539|gb|EJA50943.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Newport str. CVM 22425]
 gi|395988827|gb|EJH97973.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 640631]
 gi|395992290|gb|EJI01408.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 622731-39]
 gi|395993445|gb|EJI02540.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 639016-6]
 gi|395999543|gb|EJI08561.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 77-0424]
 gi|396002207|gb|EJI11212.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 485549-17]
 gi|396004712|gb|EJI13694.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 607307-6]
 gi|396009964|gb|EJI18879.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 629164-26]
 gi|396019577|gb|EJI28429.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 596866-70]
 gi|396021030|gb|EJI29863.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 596866-22]
 gi|396026531|gb|EJI35298.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 639672-50]
 gi|396033840|gb|EJI42545.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 639672-46]
 gi|396034715|gb|EJI43401.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 629164-37]
 gi|396036398|gb|EJI45059.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 78-1757]
 gi|396038793|gb|EJI47427.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 77-1427]
 gi|396047778|gb|EJI56349.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 77-2659]
 gi|396058858|gb|EJI67317.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 8b-1]
 gi|396058950|gb|EJI67408.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 22510-1]
 gi|396061786|gb|EJI70204.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648905 5-18]
 gi|396063160|gb|EJI71561.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 50-3079]
 gi|396069169|gb|EJI77509.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 58-6482]
 gi|396074633|gb|EJI82919.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648901 6-18]
 gi|397781978|gb|AFO66361.1| ribonuclease III [Salmonella enterica subsp. salamae serovar Sofia]
 gi|397782066|gb|AFO66432.1| ribonuclease III [Salmonella enterica subsp. salamae serovar Sofia]
 gi|402518352|gb|EJW25737.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. CFSAN00326]
 gi|402519832|gb|EJW27191.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. CFSAN00322]
 gi|402527060|gb|EJW34325.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. CFSAN00325]
 gi|402532584|gb|EJW39775.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. CFSAN00328]
 gi|414016868|gb|EKT00627.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm1]
 gi|414017443|gb|EKT01161.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm8]
 gi|414018228|gb|EKT01895.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm2]
 gi|414030765|gb|EKT13849.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm9]
 gi|414032276|gb|EKT15285.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm3]
 gi|414035700|gb|EKT18560.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm4]
 gi|414045761|gb|EKT28132.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm10]
 gi|414046359|gb|EKT28692.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm6]
 gi|414051330|gb|EKT33441.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm11]
 gi|414058498|gb|EKT40164.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm12]
 gi|434956234|gb|ELL49991.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 22704]
 gi|434957917|gb|ELL51511.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CHS44]
 gi|434964632|gb|ELL57630.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1882]
 gi|434971537|gb|ELL64040.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1884]
 gi|434978516|gb|ELL70549.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1594]
 gi|434984142|gb|ELL75903.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1566]
 gi|434987657|gb|ELL79289.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1580]
 gi|434997153|gb|ELL88418.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1543]
 gi|435004177|gb|ELL95170.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1441]
 gi|435010866|gb|ELM01621.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1810]
 gi|435011124|gb|ELM01861.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1558]
 gi|435013278|gb|ELM03932.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1018]
 gi|435017454|gb|ELM07957.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. SE30663]
 gi|435021781|gb|ELM12149.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1010]
 gi|435025374|gb|ELM15522.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_0895]
 gi|435028770|gb|ELM18830.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1729]
 gi|435032797|gb|ELM22720.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_0899]
 gi|435034582|gb|ELM24451.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1457]
 gi|435036174|gb|ELM25996.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1747]
 gi|435052630|gb|ELM42121.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1444]
 gi|435053316|gb|ELM42769.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_0968]
 gi|435061473|gb|ELM50700.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1445]
 gi|435064629|gb|ELM53756.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1559]
 gi|435068713|gb|ELM57724.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1808]
 gi|435068900|gb|ELM57910.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1565]
 gi|435077398|gb|ELM66153.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_0956]
 gi|435082698|gb|ELM71310.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1811]
 gi|435087861|gb|ELM76334.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1455]
 gi|435096011|gb|ELM84285.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1575]
 gi|435098148|gb|ELM86392.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1725]
 gi|435098358|gb|ELM86601.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1745]
 gi|435109565|gb|ELM97512.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1791]
 gi|435112358|gb|ELN00227.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1795]
 gi|435116256|gb|ELN04002.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 576709]
 gi|435118099|gb|ELN05780.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 635290-58]
 gi|435120734|gb|ELN08299.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 607308-19]
 gi|435131435|gb|ELN18648.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 607307-2]
 gi|435132033|gb|ELN19234.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 607308-16]
 gi|435139724|gb|ELN26707.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 607308-9]
 gi|435140049|gb|ELN27020.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. SE15-1]
 gi|435147224|gb|ELN34003.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 629163]
 gi|435147459|gb|ELN34223.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CVM_N202]
 gi|435151040|gb|ELN37701.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CVM_56-3991]
 gi|435157921|gb|ELN44343.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CVM_76-3618]
 gi|435167349|gb|ELN53281.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CVM_81-2490]
 gi|435171051|gb|ELN56694.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. SL909]
 gi|435175024|gb|ELN60452.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. SL913]
 gi|435180968|gb|ELN66068.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 638970-15]
 gi|435186107|gb|ELN70956.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CVM_69-4941]
 gi|435189433|gb|ELN74067.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 17927]
 gi|435192305|gb|ELN76837.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CHS4]
 gi|435199513|gb|ELN83589.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 543463 22-17]
 gi|435200754|gb|ELN84722.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 13183-1]
 gi|435212682|gb|ELN95651.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 543463 40-18]
 gi|435213753|gb|ELN96623.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 22558]
 gi|435220438|gb|ELO02735.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 561362 1-1]
 gi|435226367|gb|ELO07945.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 642044 4-1]
 gi|435231070|gb|ELO12328.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 642046 4-7]
 gi|435231892|gb|ELO13037.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648898 4-5]
 gi|435233551|gb|ELO14543.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648899 3-17]
 gi|435241853|gb|ELO22173.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648901 1-17]
 gi|435246802|gb|ELO26792.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648900 1-16]
 gi|435251863|gb|ELO31461.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648901 39-2]
 gi|435256313|gb|ELO35622.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648902 6-8]
 gi|435264520|gb|ELO43432.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648903 1-6]
 gi|435267568|gb|ELO46246.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 653049 13-19]
 gi|435276318|gb|ELO54330.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 642044 8-1]
 gi|435277988|gb|ELO55864.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 561362 9-7]
 gi|435284737|gb|ELO62165.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648904 3-6]
 gi|435286520|gb|ELO63773.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 543463 42-20]
 gi|435294403|gb|ELO71036.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648901 16-16]
 gi|435301164|gb|ELO77208.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 33944]
 gi|435304454|gb|ELO80215.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. SARB17]
 gi|435310951|gb|ELO85265.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 76-2651]
 gi|435318013|gb|ELO91002.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 81-2625]
 gi|435327335|gb|ELO99066.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 62-1976]
 gi|435332801|gb|ELP03704.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 53-407]
 gi|435339245|gb|ELP08242.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 50-5646]
 gi|436415313|gb|ELP13233.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Agona
           str. SH10GFN094]
 gi|436420925|gb|ELP18778.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Agona
           str. SH11G1113]
 gi|436421386|gb|ELP19231.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Agona
           str. SH08SF124]
 gi|444851788|gb|ELX76874.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9184]
 gi|444851832|gb|ELX76917.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Dublin str. HWS51]
 gi|444852303|gb|ELX77383.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Dublin str. SL1438]
 gi|444864724|gb|ELX89513.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. SE8a]
 gi|444865382|gb|ELX90153.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 20037]
 gi|444868923|gb|ELX93527.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. SE10]
 gi|444872050|gb|ELX96420.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 18569]
 gi|444880266|gb|ELY04346.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 13-1]
 gi|444883115|gb|ELY07022.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 436]
 gi|444885226|gb|ELY09025.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. PT23]
 gi|451912595|gb|AGF84401.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Javiana str. CFSAN001992]
          Length = 226

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 58/101 (57%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ F+ +  L+H FP ++EG ++  RA +V+   LA LA+   L + + 
Sbjct: 36  HNERLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLR 95

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
              G         +  +A+  EAL+G +FLD  I   +Q+ 
Sbjct: 96  LGPGELKSGGFRRESILADTVEALIGGVFLDSNIQTVEQLI 136


>gi|213161855|ref|ZP_03347565.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
          Length = 231

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 58/101 (57%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ F+ +  L+H FP ++EG ++  RA +V+   LA LA+   L + + 
Sbjct: 41  HNERLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLR 100

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
              G         +  +A+  EAL+G +FLD  I   +Q+ 
Sbjct: 101 LGPGELKSGGFRRESILADTVEALIGGVFLDSNIQTVEQLI 141



 Score = 41.6 bits (96), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 7/67 (10%)

Query: 956  WVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQL 1015
            W   +P++  +  L+   G  FNH  LL +  T RS    +     N+RLEFLGD++L  
Sbjct: 3    WYRMNPIV--INRLQRKLGYTFNHQELLQQALTHRSASSKH-----NERLEFLGDSILSF 55

Query: 1016 ITSDYLY 1022
            + ++ LY
Sbjct: 56   VIANALY 62


>gi|152986476|ref|YP_001350091.1| ribonuclease III [Pseudomonas aeruginosa PA7]
 gi|452876796|ref|ZP_21954132.1| ribonuclease III [Pseudomonas aeruginosa VRFPA01]
 gi|189043330|sp|A6VAK6.1|RNC_PSEA7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|150961634|gb|ABR83659.1| ribonuclease III [Pseudomonas aeruginosa PA7]
 gi|452186403|gb|EME13421.1| ribonuclease III [Pseudomonas aeruginosa VRFPA01]
          Length = 229

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 59/99 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDA++ F+    LFH FP   EG L+  RA +V+ + LA LA+   + D++ 
Sbjct: 35  NNERLEFLGDAILNFVIGEALFHHFPQAREGQLSRLRARLVKGETLALLARGFEVGDYLR 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ 920
              G         +  +A+  EAL+GA++LD G+D A +
Sbjct: 95  LGSGELKSGGFRRESILADAMEALIGAIYLDTGMDSARE 133


>gi|15595967|ref|NP_249461.1| ribonuclease III [Pseudomonas aeruginosa PAO1]
 gi|107100231|ref|ZP_01364149.1| hypothetical protein PaerPA_01001254 [Pseudomonas aeruginosa PACS2]
 gi|116048686|ref|YP_792514.1| ribonuclease III [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893287|ref|YP_002442156.1| ribonuclease III [Pseudomonas aeruginosa LESB58]
 gi|254239132|ref|ZP_04932455.1| ribonuclease III [Pseudomonas aeruginosa C3719]
 gi|254245025|ref|ZP_04938347.1| ribonuclease III [Pseudomonas aeruginosa 2192]
 gi|296390880|ref|ZP_06880355.1| ribonuclease III [Pseudomonas aeruginosa PAb1]
 gi|313105592|ref|ZP_07791858.1| ribonuclease III [Pseudomonas aeruginosa 39016]
 gi|355647247|ref|ZP_09054933.1| ribonuclease 3 [Pseudomonas sp. 2_1_26]
 gi|386060329|ref|YP_005976851.1| ribonuclease III [Pseudomonas aeruginosa M18]
 gi|386064443|ref|YP_005979747.1| ribonuclease III [Pseudomonas aeruginosa NCGM2.S1]
 gi|392985750|ref|YP_006484337.1| ribonuclease III [Pseudomonas aeruginosa DK2]
 gi|416858214|ref|ZP_11913210.1| ribonuclease III [Pseudomonas aeruginosa 138244]
 gi|416876829|ref|ZP_11919463.1| ribonuclease III [Pseudomonas aeruginosa 152504]
 gi|418586884|ref|ZP_13150921.1| ribonuclease III [Pseudomonas aeruginosa MPAO1/P1]
 gi|418589135|ref|ZP_13153064.1| ribonuclease III [Pseudomonas aeruginosa MPAO1/P2]
 gi|419752732|ref|ZP_14279138.1| ribonuclease III [Pseudomonas aeruginosa PADK2_CF510]
 gi|420141304|ref|ZP_14648996.1| ribonuclease III [Pseudomonas aeruginosa CIG1]
 gi|421155064|ref|ZP_15614550.1| ribonuclease III [Pseudomonas aeruginosa ATCC 14886]
 gi|421158827|ref|ZP_15618023.1| ribonuclease III [Pseudomonas aeruginosa ATCC 25324]
 gi|421169883|ref|ZP_15627886.1| ribonuclease III [Pseudomonas aeruginosa ATCC 700888]
 gi|421176238|ref|ZP_15633905.1| ribonuclease III [Pseudomonas aeruginosa CI27]
 gi|421182259|ref|ZP_15639741.1| ribonuclease III [Pseudomonas aeruginosa E2]
 gi|421515390|ref|ZP_15962076.1| ribonuclease III [Pseudomonas aeruginosa PAO579]
 gi|424939814|ref|ZP_18355577.1| ribonuclease III [Pseudomonas aeruginosa NCMG1179]
 gi|451987667|ref|ZP_21935820.1| Ribonuclease III [Pseudomonas aeruginosa 18A]
 gi|7531195|sp|Q9XCX9.1|RNC_PSEAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|122257792|sp|Q02HS2.1|RNC_PSEAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735378|sp|B7UYX2.1|RNC_PSEA8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|5114183|gb|AAD40229.1|AF123492_1 RNase III [Pseudomonas aeruginosa PAK]
 gi|9946659|gb|AAG04159.1|AE004512_2 ribonuclease III [Pseudomonas aeruginosa PAO1]
 gi|115583907|gb|ABJ09922.1| ribonuclease III [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126171063|gb|EAZ56574.1| ribonuclease III [Pseudomonas aeruginosa C3719]
 gi|126198403|gb|EAZ62466.1| ribonuclease III [Pseudomonas aeruginosa 2192]
 gi|218773515|emb|CAW29327.1| ribonuclease III [Pseudomonas aeruginosa LESB58]
 gi|310878360|gb|EFQ36954.1| ribonuclease III [Pseudomonas aeruginosa 39016]
 gi|334839726|gb|EGM18401.1| ribonuclease III [Pseudomonas aeruginosa 138244]
 gi|334840282|gb|EGM18940.1| ribonuclease III [Pseudomonas aeruginosa 152504]
 gi|346056260|dbj|GAA16143.1| ribonuclease III [Pseudomonas aeruginosa NCMG1179]
 gi|347306635|gb|AEO76749.1| ribonuclease III [Pseudomonas aeruginosa M18]
 gi|348033002|dbj|BAK88362.1| ribonuclease III [Pseudomonas aeruginosa NCGM2.S1]
 gi|354828012|gb|EHF12143.1| ribonuclease 3 [Pseudomonas sp. 2_1_26]
 gi|375042503|gb|EHS35152.1| ribonuclease III [Pseudomonas aeruginosa MPAO1/P1]
 gi|375052027|gb|EHS44487.1| ribonuclease III [Pseudomonas aeruginosa MPAO1/P2]
 gi|384400862|gb|EIE47219.1| ribonuclease III [Pseudomonas aeruginosa PADK2_CF510]
 gi|392321255|gb|AFM66635.1| ribonuclease III [Pseudomonas aeruginosa DK2]
 gi|403245948|gb|EJY59712.1| ribonuclease III [Pseudomonas aeruginosa CIG1]
 gi|404349118|gb|EJZ75455.1| ribonuclease III [Pseudomonas aeruginosa PAO579]
 gi|404521095|gb|EKA31724.1| ribonuclease III [Pseudomonas aeruginosa ATCC 14886]
 gi|404525517|gb|EKA35782.1| ribonuclease III [Pseudomonas aeruginosa ATCC 700888]
 gi|404531046|gb|EKA41012.1| ribonuclease III [Pseudomonas aeruginosa CI27]
 gi|404542419|gb|EKA51739.1| ribonuclease III [Pseudomonas aeruginosa E2]
 gi|404549253|gb|EKA58166.1| ribonuclease III [Pseudomonas aeruginosa ATCC 25324]
 gi|451754657|emb|CCQ88343.1| Ribonuclease III [Pseudomonas aeruginosa 18A]
 gi|453044570|gb|EME92293.1| ribonuclease III [Pseudomonas aeruginosa PA21_ST175]
          Length = 229

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 59/99 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDA++ F+    LFH FP   EG L+  RA +V+ + LA LA+   + D++ 
Sbjct: 35  NNERLEFLGDAILNFVIGEALFHHFPQAREGQLSRLRARLVKGETLALLARGFEVGDYLR 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ 920
              G         +  +A+  EAL+GA++LD G+D A +
Sbjct: 95  LGSGELKSGGFRRESILADAMEALIGAIYLDTGMDSARE 133


>gi|49081844|gb|AAT50322.1| PA0770, partial [synthetic construct]
          Length = 230

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 59/99 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDA++ F+    LFH FP   EG L+  RA +V+ + LA LA+   + D++ 
Sbjct: 35  NNERLEFLGDAILNFVIGEALFHHFPQAREGQLSRLRARLVKGETLALLARGFEVGDYLR 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ 920
              G         +  +A+  EAL+GA++LD G+D A +
Sbjct: 95  LGSGELKSGGFRRESILADAMEALIGAIYLDTGMDSARE 133


>gi|379657319|emb|CBW18643.2| Ribonuclease III, partial [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
          Length = 200

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 58/101 (57%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ F+ +  L+H FP ++EG ++  RA +V+   LA LA+   L + + 
Sbjct: 10  HNERLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLR 69

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
              G         +  +A+  EAL+G +FLD  I   +Q+ 
Sbjct: 70  LGPGELKSGGFRRESILADTVEALIGGVFLDSNIQTVEQLI 110


>gi|255019675|ref|ZP_05291754.1| Ribonuclease III [Acidithiobacillus caldus ATCC 51756]
 gi|340783042|ref|YP_004749649.1| ribonuclease III [Acidithiobacillus caldus SM-1]
 gi|254970898|gb|EET28381.1| Ribonuclease III [Acidithiobacillus caldus ATCC 51756]
 gi|340557193|gb|AEK58947.1| Ribonuclease III [Acidithiobacillus caldus SM-1]
          Length = 232

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/105 (36%), Positives = 57/105 (54%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDA + F+ +  L+  FP + EG L+  RA +V+ + LA +A  I L D ++
Sbjct: 34  HNERLEFLGDAALNFVVAAELYARFPKVSEGNLSRMRARLVREETLAQVAGEIALADSLI 93

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
              G             A+  EA++GA +LDGG   A  +   ++
Sbjct: 94  LGPGELRSGGARRDSIRADALEAIIGAAYLDGGFAAAQGIVRQLI 138


>gi|113461383|ref|YP_719452.1| ribonuclease III [Haemophilus somnus 129PT]
 gi|112823426|gb|ABI25515.1| RNAse III [Haemophilus somnus 129PT]
          Length = 227

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 12/140 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ F     L+  FP   EG L+  RA +V+ Q LA +A+++ L D++ 
Sbjct: 37  NNERLEFLGDSILNFAIGKALYEKFPKSNEGELSRMRATLVKEQTLAVVARQVELGDYLK 96

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLYKD 929
              G         +  +++C EAL+ A++LD GIDVA            +Q+      KD
Sbjct: 97  LGAGELKSGGFRRESILSDCVEALIAAIYLDAGIDVALARVYQWYQELLEQIKPGEAQKD 156

Query: 930 NEVRFKQWMYYPQHPLQEQE 949
            + R ++++   +  L E E
Sbjct: 157 PKTRLQEFLQGHRLKLPEYE 176


>gi|170719010|ref|YP_001784170.1| ribonuclease III [Haemophilus somnus 2336]
 gi|189043321|sp|B0USS1.1|RNC_HAES2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|168827139|gb|ACA32510.1| Ribonuclease III [Haemophilus somnus 2336]
          Length = 223

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 12/140 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ F     L+  FP   EG L+  RA +V+ Q LA +A+++ L D++ 
Sbjct: 33  NNERLEFLGDSILNFAIGKALYEKFPKSNEGELSRMRATLVKEQTLAVVARQVELGDYLK 92

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLYKD 929
              G         +  +++C EAL+ A++LD GIDVA            +Q+      KD
Sbjct: 93  LGAGELKSGGFRRESILSDCVEALIAAIYLDAGIDVALARVYQWYQELLEQIKPGEAQKD 152

Query: 930 NEVRFKQWMYYPQHPLQEQE 949
            + R ++++   +  L E E
Sbjct: 153 PKTRLQEFLQGHRLKLPEYE 172


>gi|290476134|ref|YP_003469034.1| RNase III, ds RNA [Xenorhabdus bovienii SS-2004]
 gi|289175467|emb|CBJ82270.1| RNase III, ds RNA [Xenorhabdus bovienii SS-2004]
          Length = 226

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 62/107 (57%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+H FP ++EG ++  RA +V+   LA LA+   L 
Sbjct: 32  ANSKHNERLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELG 91

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS 924
           + +    G         +  +A+  EAL+GA+FLD  I   +++  S
Sbjct: 92  ECLRLGPGELKSGGHRRESILADSIEALIGAIFLDSDIQTIERIILS 138


>gi|440683448|ref|YP_007158243.1| Ribonuclease 3 [Anabaena cylindrica PCC 7122]
 gi|428680567|gb|AFZ59333.1| Ribonuclease 3 [Anabaena cylindrica PCC 7122]
          Length = 395

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 5/119 (4%)

Query: 812 RKVATESNITH-NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
           R  A E+ I   NE+LEFLGD ++ F+   +++  + DI EG L+  +  +V N  LA L
Sbjct: 191 RSYAYENRINKDNEQLEFLGDCILGFLAGAYIYEQYGDISEGELSKLKERLVDNPQLAKL 250

Query: 871 AKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSV 925
           A ++ L  ++L   G       + +  ++N FEA++GA +LD GI    ++    F+SV
Sbjct: 251 ANQLNLGQWLLLGKGEKSQDGSKKESLLSNTFEAIIGAYYLDSGIQAVQEIVYPLFASV 309



 Score = 41.6 bits (96), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 25/46 (54%)

Query: 977  FNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            F  + LL R  T RS  Y N     N++LEFLGD +L  +   Y+Y
Sbjct: 178  FEDVTLLERSLTHRSYAYENRINKDNEQLEFLGDCILGFLAGAYIY 223


>gi|157362928|ref|YP_001469695.1| ribonuclease III [Thermotoga lettingae TMO]
 gi|189043371|sp|A8F397.1|RNC_THELT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157313532|gb|ABV32631.1| Ribonuclease III [Thermotoga lettingae TMO]
          Length = 238

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 5/118 (4%)

Query: 811 GRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
           GRK     ++  NERLEFLGDAV++ + + +L+  FP+  EG +A  +AAI   + LA +
Sbjct: 43  GRK-----DVESNERLEFLGDAVIDLLLAEYLYLEFPEASEGVMAKVKAAIASEEALAQI 97

Query: 871 AKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 928
           A+ I L  +M    G ++    E    +A+  EA++ A+++DGG+    +VF S   K
Sbjct: 98  ARDINLGRYMFLGRGEEVSSGRERDSLLADMLEAVVAAVYIDGGLTAVKKVFLSYFAK 155


>gi|149910155|ref|ZP_01898801.1| ribonuclease III [Moritella sp. PE36]
 gi|149806741|gb|EDM66705.1| ribonuclease III [Moritella sp. PE36]
          Length = 223

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 12/136 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+V+ FI S  LF  FP++ EG L+  RA +V+   LA +A+   L + ++
Sbjct: 35  HNERLEFLGDSVLGFIISDALFRQFPEVPEGDLSRMRATLVKGLTLAEIAREFELSECLI 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ------------VFSSVLYKD 929
              G         +  +A+  EAL+GA++LD  I+   +            +   +  KD
Sbjct: 95  LGPGELKSGGFRRESILADTVEALIGAMYLDSDIEKTRERVLAWYASRLATIEPGIGQKD 154

Query: 930 NEVRFKQWMYYPQHPL 945
            + + ++W+   + PL
Sbjct: 155 AKTQLQEWLQGRKQPL 170


>gi|315282805|ref|ZP_07871128.1| ribonuclease III [Listeria marthii FSL S4-120]
 gi|313613534|gb|EFR87355.1| ribonuclease III [Listeria marthii FSL S4-120]
          Length = 229

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 59/109 (54%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           N+  NERLEFLGDAV+E   S +LF+ +P++ EG +   RAAIV    L   A+ +    
Sbjct: 38  NVKDNERLEFLGDAVLELTVSDYLFNKYPEMAEGHMTKMRAAIVCEPSLVEFAEAVHFSK 97

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
           ++    G +          +A+ FE+ +GAL+LD GID        V++
Sbjct: 98  YVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVTFLERVIF 146



 Score = 45.8 bits (107), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 6/64 (9%)

Query: 963  LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 1018
            + Q + L+ S G  F  + LL + FT  S  Y N      +  N+RLEFLGD VL+L  S
Sbjct: 1    MNQWEELQESVGFDFKDVELLKQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 1019 DYLY 1022
            DYL+
Sbjct: 59   DYLF 62


>gi|15895025|ref|NP_348374.1| ribonuclease III [Clostridium acetobutylicum ATCC 824]
 gi|22654069|sp|Q97IA4.1|RNC_CLOAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|15024717|gb|AAK79714.1|AE007684_2 DsRNA-specific ribonuclease III [Clostridium acetobutylicum ATCC
           824]
          Length = 230

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 69/130 (53%), Gaps = 8/130 (6%)

Query: 790 IHFQNTRKRGINTLINIMSKLGRKVATES-NITHNERLEFLGDAVVEFITSIHLFHVFPD 848
           I FQN     IN L+  ++      A E+ N  +NERLEFLGDAV++   S + F  +P 
Sbjct: 16  IEFQN-----INLLVTALTH--SSYANENKNAEYNERLEFLGDAVLQLSISEYFFKKYPT 68

Query: 849 IEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGA 908
           I EG L   RA +V    L  + +R  L  ++  +HG +L         +A+C EA++ A
Sbjct: 69  ISEGELTKKRALVVCGMSLHSIGERWQLGKYIRMSHGEELTGGRTRVSIIADCVEAVIAA 128

Query: 909 LFLDGGIDVA 918
           ++LD G D A
Sbjct: 129 IYLDKGFDTA 138



 Score = 42.4 bits (98), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 27/49 (55%)

Query: 974  GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            G+ F +I LL    T  S    N     N+RLEFLGD VLQL  S+Y +
Sbjct: 15   GIEFQNINLLVTALTHSSYANENKNAEYNERLEFLGDAVLQLSISEYFF 63


>gi|365902819|ref|ZP_09440642.1| ribonuclease III [Lactobacillus malefermentans KCTC 3548]
          Length = 232

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 4/132 (3%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           N+   ER+EFLGDAV++F+ S ++F  +P + +G L   RAA+V  +  A  A+     D
Sbjct: 40  NLKFYERIEFLGDAVMQFVVSEYIFKRYPQLPQGRLTRLRAAMVNEESFASFARECHFND 99

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQW 937
           ++    G +L +  E    + + FE+ +GA+++D GI         V+Y K +E RF   
Sbjct: 100 YIRLGKGEELANARERDSLLCDIFESFVGAVYMDQGIKKVITFAEQVIYPKLDEGRFDD- 158

Query: 938 MYYPQHPLQEQE 949
             Y  H  + QE
Sbjct: 159 --YFDHKTELQE 168


>gi|209517222|ref|ZP_03266067.1| Ribonuclease III [Burkholderia sp. H160]
 gi|209502358|gb|EEA02369.1| Ribonuclease III [Burkholderia sp. H160]
          Length = 423

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 57/102 (55%)

Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
           THNERLEFLGD+V+    +  LF  F  ++EG L+  RA +V+ Q L  +A+ + + + +
Sbjct: 32  THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISEGL 91

Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
               G            +A+  EA++GA+FLDGG D A  V 
Sbjct: 92  RLGEGELRSGGFRRPSILADTLEAVLGAIFLDGGFDAAQTVI 133


>gi|195978496|ref|YP_002123740.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975201|gb|ACG62727.1| ribonuclease III Rnc [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 231

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/108 (35%), Positives = 62/108 (57%)

Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
           NI+HNERLEFLGDAV++ I S +LF  +P   EG ++  R+ IV+ + LA  ++    + 
Sbjct: 40  NISHNERLEFLGDAVLQLIISEYLFAKYPKQTEGDMSKLRSTIVREESLAGFSRYCSFDA 99

Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
           ++    G +       +  + + FEA +GAL LD GI+   +  + V+
Sbjct: 100 YIKLGKGEEKSGGRHRETILGDLFEAFLGALLLDKGIEEVRRFLNQVM 147



 Score = 48.9 bits (115), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 7/66 (10%)

Query: 962  LLKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLI 1016
            ++K+L+  LE S  + F+  RLL   FT  S  Y N    L +  N+RLEFLGD VLQLI
Sbjct: 1    MMKKLEALLENSFNIRFDDKRLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLI 58

Query: 1017 TSDYLY 1022
             S+YL+
Sbjct: 59   ISEYLF 64


>gi|288800507|ref|ZP_06405965.1| ribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332720|gb|EFC71200.1| ribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
          Length = 321

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 25/141 (17%)

Query: 777 NCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEF 836
           N  + Q     + IHF+N + + +N                     NERLEFLGDA+++ 
Sbjct: 13  NIELYQMALSHKSIHFKNKKGKPVN---------------------NERLEFLGDAILDA 51

Query: 837 ITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKH 896
           I    ++  FP   EG L   R+ +VQ + L  +A+ IGL   ++Y+ G +  H     +
Sbjct: 52  IVGDIVYKHFPGKREGFLTNTRSKLVQRETLNKIAQEIGLSR-LIYSSGRNFSHN---SY 107

Query: 897 AMANCFEALMGALFLDGGIDV 917
              N FEAL+GAL+LD G ++
Sbjct: 108 MAGNAFEALIGALYLDRGYNL 128


>gi|375008162|ref|YP_004981795.1| ribonuclease 3 [Geobacillus thermoleovorans CCB_US3_UF5]
 gi|359287011|gb|AEV18695.1| Ribonuclease 3 [Geobacillus thermoleovorans CCB_US3_UF5]
          Length = 246

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 1/131 (0%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGDAV+E   S +LF  FP + EG L   RAAIV    L   A  +   + +L 
Sbjct: 56  NERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLL 115

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
             G +L         +A+ FEA +GAL+LD G++         ++ K +E  F   M + 
Sbjct: 116 GKGEELTGGRTRPALLADVFEAFIGALYLDQGMEAVLHFLGQTIFPKIDEGAFSHVMDFK 175

Query: 942 QHPLQEQEPDG 952
               +  + DG
Sbjct: 176 SQLQELVQRDG 186



 Score = 40.0 bits (92), Expect = 6.4,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 965  QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDY 1020
            + Q L+   G+ F + +LL + FT  S  Y N         N+RLEFLGD VL+L  S Y
Sbjct: 17   KFQELQNKIGITFRNEKLLIQAFTHSS--YVNEHRRRLHEDNERLEFLGDAVLELTVSQY 74

Query: 1021 LY 1022
            L+
Sbjct: 75   LF 76


>gi|288941442|ref|YP_003443682.1| ribonuclease III [Allochromatium vinosum DSM 180]
 gi|288896814|gb|ADC62650.1| ribonuclease III [Allochromatium vinosum DSM 180]
          Length = 225

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 15/150 (10%)

Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
           ++NERLEFLGDA++ F+ +  L+  FP  +EG L+  RA++V+ + LA LA+ + L D +
Sbjct: 34  SNNERLEFLGDALIGFVIAEALWERFPKADEGTLSRMRASLVKRESLARLARDLKLGDSL 93

Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID----VADQVFSSVLY--------K 928
               G            +A+  EA++GA++LD G +    V  ++F++ L         K
Sbjct: 94  RLGAGELRTGGHARDSILADALEAVLGAVYLDAGFERTRTVVLELFAARLEQTDAERAGK 153

Query: 929 DNEVRFKQWMYYPQHPLQEQ---EPDGDRQ 955
           D + R ++W+   + PL E      DGD+ 
Sbjct: 154 DPKTRLQEWLQSYKRPLPEYLVLSIDGDQH 183


>gi|395648702|ref|ZP_10436552.1| ribonuclease III [Pseudomonas extremaustralis 14-3 substr. 14-3b]
          Length = 229

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/110 (36%), Positives = 63/110 (57%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDA++ F+    LF  FP   EG L+  RA +V+ + LA LA+  GL +++ 
Sbjct: 35  NNERLEFLGDAILNFVAGEALFERFPQAREGQLSRLRARLVKGETLAVLARGFGLGEYLR 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
              G         +  +A+  EAL+GA++LD G++ A    ++ L  + E
Sbjct: 95  LGSGELKSGGFRRESILADALEALIGAIYLDAGMEAAKARVTAWLTSEIE 144


>gi|348028526|ref|YP_004871212.1| ribonuclease III [Glaciecola nitratireducens FR1064]
 gi|347945869|gb|AEP29219.1| ribonuclease III [Glaciecola nitratireducens FR1064]
          Length = 225

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 12/136 (8%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGDAV+  + +  L+  FP+  EG L   R+++V+   LA +AK      F+ 
Sbjct: 34  HNERLEFLGDAVLGMVVAELLYQQFPEQPEGKLTRMRSSLVKGDTLAMIAKEHDFGAFLK 93

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVAD----QVFSSVL--------YKD 929
              G            +A+  EA++GA+FL+ GID A     ++F+S +         KD
Sbjct: 94  LGSGEMKSGGHRRSSTLADVVEAVIGAIFLESGIDAAKNTIVKLFASRIEKLDPNRQIKD 153

Query: 930 NEVRFKQWMYYPQHPL 945
           N+ + ++++   Q PL
Sbjct: 154 NKTQLQEFLQSRQLPL 169


>gi|304398620|ref|ZP_07380492.1| ribonuclease III [Pantoea sp. aB]
 gi|440757289|ref|ZP_20936477.1| Ribonuclease III [Pantoea agglomerans 299R]
 gi|304353831|gb|EFM18206.1| ribonuclease III [Pantoea sp. aB]
 gi|436428848|gb|ELP26497.1| Ribonuclease III [Pantoea agglomerans 299R]
          Length = 226

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 60/101 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ ++ +  L+H FP ++EG ++  RA +V+   LA +A+   L + + 
Sbjct: 36  HNERLEFLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLR 95

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 922
              G         +  +A+  EAL+G +FLD GI+  +Q+ 
Sbjct: 96  LGPGELKSGGFRRESILADTVEALIGGIFLDSGIERVEQLI 136


>gi|262273710|ref|ZP_06051523.1| ribonuclease III [Grimontia hollisae CIP 101886]
 gi|262222125|gb|EEY73437.1| ribonuclease III [Grimontia hollisae CIP 101886]
          Length = 224

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 56/97 (57%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ F+ +  L+H FP+++EG ++  RA +V+   LA L +   L D + 
Sbjct: 35  HNERLEFLGDSILSFVVADDLYHRFPNVDEGDMSRMRATLVRGNTLAELGREFELGDVLQ 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
              G            +A+  EA++GA++LD  ++  
Sbjct: 95  LGPGELKSGGFRRDSILADAVEAIIGAIYLDSSLETV 131


>gi|121728984|ref|ZP_01681988.1| ribonuclease III [Vibrio cholerae V52]
 gi|147674970|ref|YP_001217963.1| ribonuclease III [Vibrio cholerae O395]
 gi|153214513|ref|ZP_01949422.1| ribonuclease III [Vibrio cholerae 1587]
 gi|153803086|ref|ZP_01957672.1| ribonuclease III [Vibrio cholerae MZO-3]
 gi|153826905|ref|ZP_01979572.1| ribonuclease III [Vibrio cholerae MZO-2]
 gi|153830879|ref|ZP_01983546.1| ribonuclease III [Vibrio cholerae 623-39]
 gi|227118903|ref|YP_002820799.1| ribonuclease III [Vibrio cholerae O395]
 gi|229514087|ref|ZP_04403549.1| ribonuclease III [Vibrio cholerae TMA 21]
 gi|229521288|ref|ZP_04410708.1| ribonuclease III [Vibrio cholerae TM 11079-80]
 gi|229524448|ref|ZP_04413853.1| ribonuclease III [Vibrio cholerae bv. albensis VL426]
 gi|229527069|ref|ZP_04416464.1| ribonuclease III [Vibrio cholerae 12129(1)]
 gi|254226246|ref|ZP_04919839.1| ribonuclease III [Vibrio cholerae V51]
 gi|254291661|ref|ZP_04962449.1| ribonuclease III [Vibrio cholerae AM-19226]
 gi|297581085|ref|ZP_06943010.1| ribonuclease III [Vibrio cholerae RC385]
 gi|423884430|ref|ZP_17724597.1| ribonuclease III [Vibrio cholerae HC-60A1]
 gi|424660958|ref|ZP_18098205.1| ribonuclease III [Vibrio cholerae HE-16]
 gi|189043374|sp|A5F5H8.1|RNC_VIBC3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|121628750|gb|EAX61217.1| ribonuclease III [Vibrio cholerae V52]
 gi|124115315|gb|EAY34135.1| ribonuclease III [Vibrio cholerae 1587]
 gi|124121368|gb|EAY40111.1| ribonuclease III [Vibrio cholerae MZO-3]
 gi|125621219|gb|EAZ49560.1| ribonuclease III [Vibrio cholerae V51]
 gi|146316853|gb|ABQ21392.1| ribonuclease III [Vibrio cholerae O395]
 gi|148873648|gb|EDL71783.1| ribonuclease III [Vibrio cholerae 623-39]
 gi|149739268|gb|EDM53530.1| ribonuclease III [Vibrio cholerae MZO-2]
 gi|150422433|gb|EDN14392.1| ribonuclease III [Vibrio cholerae AM-19226]
 gi|227014353|gb|ACP10563.1| ribonuclease III [Vibrio cholerae O395]
 gi|229335466|gb|EEO00948.1| ribonuclease III [Vibrio cholerae 12129(1)]
 gi|229338029|gb|EEO03046.1| ribonuclease III [Vibrio cholerae bv. albensis VL426]
 gi|229341820|gb|EEO06822.1| ribonuclease III [Vibrio cholerae TM 11079-80]
 gi|229349268|gb|EEO14225.1| ribonuclease III [Vibrio cholerae TMA 21]
 gi|297534911|gb|EFH73747.1| ribonuclease III [Vibrio cholerae RC385]
 gi|408049830|gb|EKG85019.1| ribonuclease III [Vibrio cholerae HE-16]
 gi|408640080|gb|EKL11881.1| ribonuclease III [Vibrio cholerae HC-60A1]
          Length = 225

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+  FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANGKHNERLEFLGDSILSFVIADELYRRFPKVNEGDMSRMRATLVRGNTLAELGREFDLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSV 925
           D++    G            +A+  EA++GA++LD  ++ A            +++    
Sbjct: 91  DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDLETARRIVLEWYQCRLEEIKPGA 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


>gi|323489554|ref|ZP_08094781.1| ribonuclease 3 [Planococcus donghaensis MPA1U2]
 gi|323396685|gb|EGA89504.1| ribonuclease 3 [Planococcus donghaensis MPA1U2]
          Length = 251

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 2/128 (1%)

Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
           T NERLEFLGDAV+E   S +L+  +P++ EG L   RAAIV    L   A  +G   ++
Sbjct: 59  TDNERLEFLGDAVLELSVSHYLYMKYPEMSEGELTKLRAAIVCEPSLVLFANELGFGKYI 118

Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWMY 939
           L   G +L         +A+ FE+ +GAL+LD G++        VL+   ++  F   M 
Sbjct: 119 LLGKGEELTGGRTRPALLADVFESYIGALYLDQGLEPVVSFLEMVLFPKVDIGAFSHVMD 178

Query: 940 YPQHPLQE 947
           Y    LQE
Sbjct: 179 YKSQ-LQE 185


>gi|152981163|ref|YP_001353060.1| ribonuclease III [Janthinobacterium sp. Marseille]
 gi|151281240|gb|ABR89650.1| ribonuclease III [Janthinobacterium sp. Marseille]
          Length = 322

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/104 (37%), Positives = 58/104 (55%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++  + +  LF  +  I+EG L+  RA +V+ Q L  +A+R+ L  F+ 
Sbjct: 33  HNERLEFLGDSILNCVVASLLFDRYSKIDEGDLSRLRANLVKQQSLYEIAQRLELSHFLR 92

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSV 925
              G            +A+  EAL GA+FLD G D A  V  ++
Sbjct: 93  LGEGELKSGGFRRPSILADTLEALFGAIFLDAGFDTARDVIRAL 136


>gi|433456418|ref|ZP_20414464.1| ribonuclease III [Arthrobacter crystallopoietes BAB-32]
 gi|432196294|gb|ELK52760.1| ribonuclease III [Arthrobacter crystallopoietes BAB-32]
          Length = 224

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/99 (38%), Positives = 60/99 (60%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           NERLEFLGD+++ F  +  L+   PD+ EG LA  R+A+V  + LA +A+ +G+   +L 
Sbjct: 32  NERLEFLGDSILGFSVTDALYRDNPDLPEGELAKRRSAVVSTRALAGIARELGIGPHILL 91

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
             G  L +  +    +A+  EAL+GA +L  GI+ A Q+
Sbjct: 92  GQGEKLTNGADKASILADTVEALIGATYLTNGIETARQM 130


>gi|50954668|ref|YP_061956.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|81391047|sp|Q6AFJ4.1|RNC_LEIXX RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|50951150|gb|AAT88851.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 237

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/108 (38%), Positives = 66/108 (61%), Gaps = 1/108 (0%)

Query: 812 RKVATESN-ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
           R  A E+  I +NERLEFLGD+++    ++ LF   P ++EG LA  RA++V +  LA +
Sbjct: 31  RSYAYENGGIPNNERLEFLGDSILGQAVTVKLFRENPGLDEGELAKRRASLVSSVALAEV 90

Query: 871 AKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
           A+ IGL +++L   G +     E    +A+  EA++GA++LD G D A
Sbjct: 91  ARGIGLGEYLLLGRGENQSGGREKASILADTVEAVIGAVYLDAGGDEA 138


>gi|418293050|ref|ZP_12904973.1| ribonuclease III [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
 gi|379064456|gb|EHY77199.1| ribonuclease III [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
          Length = 229

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 60/99 (60%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDA++ F+    LF+ FP   EG L+  RA +V+ + LA LA+   L +++ 
Sbjct: 35  NNERLEFLGDAILNFVAGEALFNHFPQAREGQLSRLRARLVKGETLAVLARGFELGEYLR 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ 920
              G         +  +A+  EAL+GA++LD G+DVA +
Sbjct: 95  LGSGELKSGGFRRESILADTLEALIGAIYLDAGMDVARE 133


>gi|421493371|ref|ZP_15940728.1| RNC [Morganella morganii subsp. morganii KT]
 gi|400192539|gb|EJO25678.1| RNC [Morganella morganii subsp. morganii KT]
          Length = 226

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 59/103 (57%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ F+ +  L+H FP ++EG ++  RA +V+   LA LA+   L + + 
Sbjct: 36  HNERLEFLGDSILSFVIANDLYHRFPKVDEGDMSRMRATLVRGNTLAELAREFNLGECLR 95

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS 924
              G         +  +A+  EAL+G +FLD  I   +++  S
Sbjct: 96  LGPGELKSGGSRRESILADTVEALIGGIFLDSDIQTIERIILS 138


>gi|357588971|ref|ZP_09127637.1| ribonuclease III [Corynebacterium nuruki S6-4]
          Length = 243

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 1/108 (0%)

Query: 812 RKVATES-NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
           R  A E+ N+ +NERLEFLGDAV+    +  L+  FPD  E  ++  RA +V    LA +
Sbjct: 45  RSFANENGNLPNNERLEFLGDAVLGLSVAEQLYRQFPDRSESDISKMRAGVVNMYALADV 104

Query: 871 AKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
           A+ +G+ D +L   G  +    +    +A+  EA++GA++L+ G DVA
Sbjct: 105 ARELGMGDHLLLGRGEMMTGGSDKHSIIADSVEAMLGAIYLEKGFDVA 152


>gi|256824933|ref|YP_003148893.1| RNAse III [Kytococcus sedentarius DSM 20547]
 gi|256688326|gb|ACV06128.1| RNAse III [Kytococcus sedentarius DSM 20547]
          Length = 228

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/105 (37%), Positives = 59/105 (56%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+V+  + + HL+   PD+ EG LA  R+A+V  + L   A R+ L D+  
Sbjct: 39  HNERLEFLGDSVLGLVVTNHLYRANPDLPEGELAKLRSAVVSARALGGEAGRLDLGDYFR 98

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
              G +          +A+  EA++GA++L  G+D A  V   +L
Sbjct: 99  LGRGEENSGGRAKNSILADGVEAVIGAVYLSSGLDAATTVVHHLL 143



 Score = 43.1 bits (100), Expect = 0.83,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 982  LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            LL +  T RS  Y N     N+RLEFLGD+VL L+ +++LY
Sbjct: 20   LLLQAVTHRSFSYENDDAPHNERLEFLGDSVLGLVVTNHLY 60


>gi|206603814|gb|EDZ40294.1| Ribonuclease III [Leptospirillum sp. Group II '5-way CG']
          Length = 247

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 83/191 (43%), Gaps = 50/191 (26%)

Query: 728 LRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGD 787
           ++ HR L+ LED + Y+F+   LL+ A TH S+                           
Sbjct: 1   MKPHRELSELEDLLGYRFRKIDLLEEATTHKSFMNE------------------------ 36

Query: 788 RRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFP 847
                                  GR++    N   NERLEFLGD V+  + + +L   +P
Sbjct: 37  -----------------------GRRLGVTRN---NERLEFLGDTVLGLVIAEYLMVTYP 70

Query: 848 DIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMG 907
              EG L+ ++  IV    LA +++ +G+  F+L   G +L    E    +A+  EA++ 
Sbjct: 71  KYPEGVLSKFKGRIVSEPTLASVSRVLGIGGFLLIGKGEELTQGREKSSLLADAMEAVIA 130

Query: 908 ALFLDGGIDVA 918
           A++LD G+D A
Sbjct: 131 AIYLDSGLDAA 141



 Score = 40.8 bits (94), Expect = 4.1,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 964  KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG---SNQRLEFLGDTVLQLITSDY 1020
            ++L  LE   G  F  I LL    T +S       LG   +N+RLEFLGDTVL L+ ++Y
Sbjct: 5    RELSELEDLLGYRFRKIDLLEEATTHKSFMNEGRRLGVTRNNERLEFLGDTVLGLVIAEY 64

Query: 1021 L 1021
            L
Sbjct: 65   L 65


>gi|46143661|ref|ZP_00134800.2| COG0571: dsRNA-specific ribonuclease [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 226

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/97 (39%), Positives = 58/97 (59%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGD+++ F     LF  FP   EG L+  RA +V+ Q LA LA++ GL ++M 
Sbjct: 36  NNERLEFLGDSILNFAIGKALFEKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMK 95

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
              G         +  +++C EA++ A++LD G+D A
Sbjct: 96  LGAGELKSGGYRRESILSDCVEAIIAAIYLDAGMDKA 132


>gi|119471905|ref|ZP_01614213.1| RNase III, ds RNA [Alteromonadales bacterium TW-7]
 gi|392536909|ref|ZP_10284046.1| RNase III, ds RNA [Pseudoalteromonas marina mano4]
 gi|119445278|gb|EAW26568.1| RNase III, ds RNA [Alteromonadales bacterium TW-7]
          Length = 225

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 54/95 (56%)

Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           HNERLEFLGD+++ F+ +  L+  FP   EG L+  R+ +V+ Q LA      GL D++ 
Sbjct: 35  HNERLEFLGDSILSFVIANALYAKFPKAREGDLSRMRSTLVRGQTLAEFGVEFGLGDYLR 94

Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
              G         +  +A+  EA++GA FLD GI+
Sbjct: 95  LGPGELKSGGFRRESTLADAVEAIIGAAFLDSGIE 129


>gi|21674928|ref|NP_662993.1| ribonuclease III [Chlorobium tepidum TLS]
 gi|28201878|sp|Q8KAN7.1|RNC_CHLTE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|21648156|gb|AAM73335.1| ribonuclease III [Chlorobium tepidum TLS]
          Length = 272

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 62/101 (61%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           N+RLEFLGDAV++ + S HLF  FP  +EG L++ RA IV  + LA  A  + L + ++ 
Sbjct: 71  NQRLEFLGDAVLDLLISEHLFKQFPGSDEGHLSSNRAKIVNRKSLAAFALELQLGEHLII 130

Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFS 923
              +D       + A+A+  EAL+GA++LD G+  A++  +
Sbjct: 131 GESADKQKIRTSESALADALEALVGAIYLDQGLAGAERFIT 171


>gi|15642457|ref|NP_232090.1| ribonuclease III [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121590982|ref|ZP_01678301.1| ribonuclease III [Vibrio cholerae 2740-80]
 gi|153820073|ref|ZP_01972740.1| ribonuclease III [Vibrio cholerae NCTC 8457]
 gi|153823692|ref|ZP_01976359.1| ribonuclease III [Vibrio cholerae B33]
 gi|227082582|ref|YP_002811133.1| ribonuclease III [Vibrio cholerae M66-2]
 gi|229507479|ref|ZP_04396984.1| ribonuclease III [Vibrio cholerae BX 330286]
 gi|229512326|ref|ZP_04401805.1| ribonuclease III [Vibrio cholerae B33]
 gi|229519462|ref|ZP_04408905.1| ribonuclease III [Vibrio cholerae RC9]
 gi|229606984|ref|YP_002877632.1| ribonuclease III [Vibrio cholerae MJ-1236]
 gi|254849586|ref|ZP_05238936.1| ribonuclease III [Vibrio cholerae MO10]
 gi|298500182|ref|ZP_07009987.1| ribonuclease III [Vibrio cholerae MAK 757]
 gi|360036336|ref|YP_004938099.1| ribonuclease III [Vibrio cholerae O1 str. 2010EL-1786]
 gi|379742249|ref|YP_005334218.1| ribonuclease III [Vibrio cholerae IEC224]
 gi|417818217|ref|ZP_12464845.1| ribonuclease III [Vibrio cholerae HCUF01]
 gi|421348387|ref|ZP_15798764.1| ribonuclease III [Vibrio cholerae HC-46A1]
 gi|18203192|sp|Q9KPB2.1|RNC_VIBCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807908|sp|C3LR04.1|RNC_VIBCM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|9657039|gb|AAF95603.1| ribonuclease III [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121547159|gb|EAX57288.1| ribonuclease III [Vibrio cholerae 2740-80]
 gi|126509385|gb|EAZ71979.1| ribonuclease III [Vibrio cholerae NCTC 8457]
 gi|126518780|gb|EAZ76003.1| ribonuclease III [Vibrio cholerae B33]
 gi|227010470|gb|ACP06682.1| ribonuclease III [Vibrio cholerae M66-2]
 gi|229344151|gb|EEO09126.1| ribonuclease III [Vibrio cholerae RC9]
 gi|229352291|gb|EEO17232.1| ribonuclease III [Vibrio cholerae B33]
 gi|229354984|gb|EEO19905.1| ribonuclease III [Vibrio cholerae BX 330286]
 gi|229369639|gb|ACQ60062.1| ribonuclease III [Vibrio cholerae MJ-1236]
 gi|254845291|gb|EET23705.1| ribonuclease III [Vibrio cholerae MO10]
 gi|297540875|gb|EFH76929.1| ribonuclease III [Vibrio cholerae MAK 757]
 gi|340035813|gb|EGQ96791.1| ribonuclease III [Vibrio cholerae HCUF01]
 gi|356647490|gb|AET27545.1| ribonuclease III [Vibrio cholerae O1 str. 2010EL-1786]
 gi|378795759|gb|AFC59230.1| ribonuclease III [Vibrio cholerae IEC224]
 gi|395942966|gb|EJH53642.1| ribonuclease III [Vibrio cholerae HC-46A1]
          Length = 225

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 12/140 (8%)

Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
           +N  HNERLEFLGD+++ F+ +  L+  FP + EG ++  RA +V+   LA L +   L 
Sbjct: 31  ANGKHNERLEFLGDSILSFVIADELYRRFPKVNEGDMSRMRATLVRGNTLAELGREFDLG 90

Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSV 925
           D++    G            +A+  EA++GA++LD  ++ A            +++    
Sbjct: 91  DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDLETARSIVLEWYHGRLEEIKPGA 150

Query: 926 LYKDNEVRFKQWMYYPQHPL 945
             KD + R ++++   + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.318    0.131    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,056,278,414
Number of Sequences: 23463169
Number of extensions: 691022076
Number of successful extensions: 2514841
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6317
Number of HSP's successfully gapped in prelim test: 6863
Number of HSP's that attempted gapping in prelim test: 2277848
Number of HSP's gapped (non-prelim): 130008
length of query: 1022
length of database: 8,064,228,071
effective HSP length: 153
effective length of query: 869
effective length of database: 8,769,330,510
effective search space: 7620548213190
effective search space used: 7620548213190
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 82 (36.2 bits)