BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14776
(1022 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NRR4|RNC_HUMAN Ribonuclease 3 OS=Homo sapiens GN=DROSHA PE=1 SV=2
Length = 1374
Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/811 (49%), Positives = 557/811 (68%), Gaps = 35/811 (4%)
Query: 230 DKWRMNNCSSEREMTEKFNTLAAMEADQIIEEE---------KKIWTRSAPADLYYTK-- 278
D+W N S + + + ++ E ++ + ++ K +W R ++ YY+
Sbjct: 370 DRWSDNQSSGK---DKNYTSIKEKEPEETMPDKNEEEEEELLKPVWIRCTHSENYYSSDP 426
Query: 279 --RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKC 336
+ D + T + R + D+FE + + K R + K K
Sbjct: 427 MDQVGDSTVVGTSRLRDLYDKFEE-------------ELGSRQEKAKAARPPWEPPKTKL 473
Query: 337 SHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDG 396
+ + S + S D+E + + E++ K+ HPDRLH ELW+ND G+MNDG
Sbjct: 474 DEDLESSSESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDG 533
Query: 397 PLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIE 456
PLC+CS+K+RR+GIRH+IY GE+ C P TNNA +L+HYR+TVSPPTNFL ++PTVIE
Sbjct: 534 PLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIE 593
Query: 457 HDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLF 516
+D+ E+IFEGFS+F+H PL +P CKVIRFNI YTI +IEE +P F VK ELF +LF
Sbjct: 594 YDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLF 653
Query: 517 HEILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPV 573
+ILEL D +LK +D CP+FH MPRFVR L D GKE+L M+++L + +
Sbjct: 654 RDILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKAL 713
Query: 574 ISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDAV 631
+ E+ + EWQ +A+ KGMI+ PG+KP ++R+DQLDRE D+ +P V
Sbjct: 714 VPEEEIANMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIV 773
Query: 632 HFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSK 691
HFG RP QL +AG P +QKLWK YVKLRHL+AN PK DK++LA +E+ LQ++R +
Sbjct: 774 HFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNT 833
Query: 692 MKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLL 751
M+R VTV +SS+GF++TGI D+ QHAM++PVL H+R+H+ L L+ I Y FQ+R LL
Sbjct: 834 MRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLL 893
Query: 752 QLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLG 811
QLA+THPS+ NFG NPDHARNSLSNCG+RQP+YGDR++H + RK+GINTLINIMS+LG
Sbjct: 894 QLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLG 953
Query: 812 RKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLA 871
+ T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGGLATYR AIVQNQHLA LA
Sbjct: 954 QDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLA 1013
Query: 872 KRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
K++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D +
Sbjct: 1014 KKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPD 1073
Query: 932 VRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRS 991
+R + W+ YP HPLQ QEP+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R+
Sbjct: 1074 LR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRT 1132
Query: 992 MGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
+G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1133 VGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1163
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
+ HN+R+EFLGD++++ + + +LF FPD EG L R+++V N+ A +A+ +G++++
Sbjct: 1140 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1199
Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
+ + + K +A+ E+ + AL++D ++ F +V +
Sbjct: 1200 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1245
>sp|Q5HZJ0|RNC_MOUSE Ribonuclease 3 OS=Mus musculus GN=Drosha PE=1 SV=1
Length = 1373
Score = 828 bits (2138), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/660 (57%), Positives = 505/660 (76%), Gaps = 6/660 (0%)
Query: 368 MMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPD 427
+ E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+ C P
Sbjct: 504 IAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPM 563
Query: 428 TNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFN 487
TNNA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL +P CKVIRFN
Sbjct: 564 TNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFN 623
Query: 488 IQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPR 544
I YTI +IEE +P F VK ELF +LF +ILEL D +LK +D CP+FH MPR
Sbjct: 624 IDYTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPR 683
Query: 545 FVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVK 604
FVR L D GKE+L M+++L + ++ E+ + EWQ +A+ KGMI+
Sbjct: 684 FVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTN 743
Query: 605 PGSKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLV 662
PG+KP ++R+DQLDRE ++ +P VHFG RP QL +AG P +QKLWK YVKLRHL+
Sbjct: 744 PGTKPSSVRIDQLDREQFNPEVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLL 803
Query: 663 ANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIP 722
AN PK DK++LA +E+ LQ++R + M+R VTV +SS+GF++TGI D+ QHAM++P
Sbjct: 804 ANSPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLP 863
Query: 723 VLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQ 782
VL H+R+H+ L L+ I Y FQ+R LLQLA+THPS+ NFG NPDHARNSLSNCG+RQ
Sbjct: 864 VLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQ 923
Query: 783 PEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHL 842
P+YGDR++H + RK+GINTLINIMS+LG+ T S I HNERLEFLGDAVVEF+TS+HL
Sbjct: 924 PKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHL 983
Query: 843 FHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCF 902
+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCF
Sbjct: 984 YYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCF 1043
Query: 903 EALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPL 962
EAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+
Sbjct: 1044 EALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPV 1102
Query: 963 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1103 LQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1162
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
+ HN+R+EFLGD++++ + + +LF FPD EG L R+++V N+ A +A+ +G++++
Sbjct: 1139 LGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1198
Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
+ + + K +A+ E+ + AL++D ++ F +V +
Sbjct: 1199 AITNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1244
>sp|O01326|RNC_CAEEL Ribonuclease 3 OS=Caenorhabditis elegans GN=drsh-1 PE=2 SV=2
Length = 1086
Score = 419 bits (1078), Expect = e-116, Method: Compositional matrix adjust.
Identities = 247/662 (37%), Positives = 376/662 (56%), Gaps = 35/662 (5%)
Query: 374 KQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADK 433
K+ HP+ +HP++ FN+KG N+GP CRC + G++H YAGED+ C +N +
Sbjct: 250 KKTHPNGIHPDISFNEKGLGNEGPECRCPEPIKTCGLKHGYYAGEDKAIDCK--KSNGEN 307
Query: 434 LYHY--RVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPL----EKLPTCKVIRFN 487
L++Y RVT P N L I + +EF FEGFSL +H PL + P CK ++
Sbjct: 308 LHYYTLRVTPLPSENQLYRTHMAI--NGEEFEFEGFSLITHAPLPDCMTRAPICK---YS 362
Query: 488 IQYTIVYIEEKVPNG-FTVKDTELFFNYLFHEILELVDLDLKSAN---NKDGCPQFHIMP 543
+ Y +EE +P+ F +D ++ F Y+FHEI E++D +L+ + + + CP HIMP
Sbjct: 363 MDYEFQLVEEFMPDECFDPEDCDMLFEYIFHEIFEMLDFELRPKHIPSDVESCPMIHIMP 422
Query: 544 RFVRELKDNGKELLPMYRVLEFFTS-SFVPVISEKLAKSKDDLSTYEWQDFADGVKGMII 602
RFV + KD+ +L VL +FTS ++S + D ++ K I+
Sbjct: 423 RFV-QTKDDLVQLWSSKTVLAYFTSKGSSEIMSPEDVNRLCDAQIDQFTRNTSKHKQSIV 481
Query: 603 VKPGSKPCAMRVDQLDRESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLV 662
+ KP A+R D +R+ E ++Y VH R P L K L ++
Sbjct: 482 LNTKFKPSAIRADWFERDEEKKEVY--VVHNAIRAQTYTAISLPRIAFLEK---TLNKMI 536
Query: 663 ANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIP 722
K +K K + L+ ++ ++ R + + GF TG+ D+ H ++
Sbjct: 537 QEKQSSGVYNKDFEKTKNE-LEHLKRENRSARNLKLREPVAGFIETGLKPDVAAHVVMTI 595
Query: 723 VLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQ 782
+ H+R++ SL+V E+ I+YKF +R +++LAL H S++ ++GT DH +N ++NCG R+
Sbjct: 596 LACHHIRYNFSLDVFEEVIEYKFNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRR 655
Query: 783 PEYG--DRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSI 840
+YG D+R + R GI +L NIM + + I HNERLE+LGDAVVE I S
Sbjct: 656 -KYGAEDKR---EKKRVAGIMSLFNIM----KGTSGGEPILHNERLEYLGDAVVELIVSH 707
Query: 841 HLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMAN 900
HL+ + EGGLATYR A+VQN++LA LAK +++ + Y+HG+DL + E KHA+AN
Sbjct: 708 HLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQYSHGADLINVAEFKHALAN 767
Query: 901 CFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQS 960
FEA+M A++LDGG+ D +FS +Y V ++W + +H L+ ++P GDR +
Sbjct: 768 AFEAVMAAIYLDGGLAPCDVIFSKAMYGHQPVLKEKWDHINEHELKREDPQGDRDLSFIT 827
Query: 961 PLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDY 1020
P L LE G+ FN+IRLLA+ FT R++ +LT G NQRLE+LGD+VLQLI SD+
Sbjct: 828 PTLSTFHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDF 887
Query: 1021 LY 1022
LY
Sbjct: 888 LY 889
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
HN+RLE+LGD+V++ I S L+ FP EG ++ R ++V NQ A + +G +F++
Sbjct: 868 HNQRLEWLGDSVLQLIVSDFLYRRFPYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVI 927
Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
A E++LK A+ EA +GAL++D GI+
Sbjct: 928 KAPYK--TPELKLKDK-ADLVEAFIGALYVDRGIE 959
>sp|Q61XX9|RNC_CAEBR Ribonuclease 3 OS=Caenorhabditis briggsae GN=drsh-1 PE=3 SV=1
Length = 1061
Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust.
Identities = 252/689 (36%), Positives = 378/689 (54%), Gaps = 40/689 (5%)
Query: 350 ESSSDSSSGEEDAEEDNWM--MELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRR 407
+ + S + E+ E N + M ++ K+NHP+ + P + +N+KG ND P CRC R
Sbjct: 203 QKADSSQTKVEEKERQNTLLRMGIERKRNHPNAIDPHISYNEKGLGNDSPECRCPFPIRN 262
Query: 408 SGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGF 467
G++H YAGE++ C+ N+ L++Y + V+P N + T + + E+ FEGF
Sbjct: 263 RGLKHGYYAGENQVLKCS--KNDRANLHYYTLHVTPAPNESQIQKTQMLINGMEYHFEGF 320
Query: 468 SLFSHHPLEKLPTC----KVIRFNIQYTIVYIEEKVPNG-FTVKDTELFFNYLFHEILEL 522
++ +H PL P C V +++I Y IEE +P F +D F Y+FH+I EL
Sbjct: 321 TMVTHAPL---PDCMTRRPVFKYSIDYEFQLIEEFMPTECFDPEDCNSIFEYIFHDIFEL 377
Query: 523 VDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKELLPMYRVLEFF-----TSSFVPVI 574
+D DL + G CP HI+PRFV +++N + VL FF + F P
Sbjct: 378 LDFDLYPKHLPPGTASCPTIHIVPRFV-AMENNTTFIWSSKTVLAFFLLHGKNNMFSPED 436
Query: 575 SEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDIYPDAVHFG 634
EK DD + +K I++ P KP A+R D R+ E +++ +
Sbjct: 437 VEKNCAMSDD----AFGRTIAKLKQSIVLNPMKKPSALRADWFSRDLENKEMF--LIQNT 490
Query: 635 SRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKR 694
R P L K +L+ + K + + L ++ + R
Sbjct: 491 IRSQNFASPFLPQIAALEKKMSRLKQ----EKKDSGNKNPHYENLKAELIVLKDKHREAR 546
Query: 695 GVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLA 754
+ + + + + TG+ D+V H + + H+R++ SL+V E I+YKF +R +++LA
Sbjct: 547 QLKLKLPVKDYIDTGLKPDVVAHVAMAIIASHHIRYNFSLSVFEKVIEYKFNDRRIVELA 606
Query: 755 LTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKV 814
L H S+R +GT PDH +N +SNCG R+ +YG + +K+GI +L NIM G +
Sbjct: 607 LIHSSFRSYYGTTPDHVKNMISNCGYRK-KYGAEE---RREKKKGIISLFNIM---GGET 659
Query: 815 ATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI 874
+ I HNERLE+LGDAVVE I S HLF + EGGLATYR A+VQN++LA LA
Sbjct: 660 SGGEPILHNERLEYLGDAVVELIASHHLFFILNHHFEGGLATYRTALVQNRNLAKLAMNC 719
Query: 875 GLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVR 933
+++ + +AHG+DL +E E KHA+AN FEALM +FLD GI D +FS +Y KD E++
Sbjct: 720 RIDEMLQFAHGADLINEAEWKHALANAFEALMAGVFLDSGIAPCDAIFSKAMYGKDPEMK 779
Query: 934 FKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMG 993
K W + +H L+ ++P GDR +P L LE G+ FN+IRLLA+ FT R++
Sbjct: 780 -KVWDHLNEHELKIEDPLGDRDLSRITPALTDFHRLEQIIGIEFNNIRLLAKAFTRRNVP 838
Query: 994 YTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
+ +LT G NQRLE+LGD+VLQLI SDYLY
Sbjct: 839 FNDLTKGHNQRLEWLGDSVLQLIISDYLY 867
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 69/128 (53%), Gaps = 15/128 (11%)
Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
HN+RLE+LGD+V++ I S +L+ FP EG ++ R ++V NQ + + +G ++F++
Sbjct: 846 HNQRLEWLGDSVLQLIISDYLYRNFPLHHEGHMSLLRTSLVSNQTQSVVCDDLGFQEFVI 905
Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL------------YKD 929
A +++++K A+ EA +GAL++D G++ +V + D
Sbjct: 906 KAPHRK--NDLKMKDK-ADLVEAFIGALYVDKGLEYCRSFIRTVFCPRLKHFINSEKWND 962
Query: 930 NEVRFKQW 937
+ +QW
Sbjct: 963 AKSHLQQW 970
>sp|Q5L6E3|RNC_CHLAB Ribonuclease 3 OS=Chlamydophila abortus (strain S26/3) GN=rnc PE=3
SV=1
Length = 237
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 86/166 (51%), Gaps = 14/166 (8%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
+ERLEFLGDAV+ I + HLF +FP ++EG L+T RAA++ +GL +++L
Sbjct: 44 SERLEFLGDAVLCLIVTEHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEYLLI 103
Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 942
G + +E A AN FEA++GA++LDGG+ A Q+ +L ++
Sbjct: 104 GKGERIQNERGKTSAYANLFEAILGAVYLDGGLAPARQITVPLLPSKKDIL--------- 154
Query: 943 HPLQEQEPDGDRQWVEQSPL--LKQLQYLEYSS--GVIFNHIRLLA 984
PL P Q + Q L L QY ++S G HIR+L
Sbjct: 155 -PLMLGNPKNRLQQLTQKHLRTLPVYQYEPWTSPQGASGYHIRVLV 199
>sp|Q253V2|RNC_CHLFF Ribonuclease 3 OS=Chlamydophila felis (strain Fe/C-56) GN=rnc PE=3
SV=1
Length = 237
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 65/104 (62%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
+ERLEFLGDAV+ I + HLF +FP ++EG L+T RAA++ +GL +++L
Sbjct: 44 SERLEFLGDAVLCLIVTEHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEYLLI 103
Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
G + +E A AN FEA++GA++LDGG+ A Q+ +L
Sbjct: 104 GKGERIQNERGRTSAYANLFEAILGAVYLDGGLAPARQITVPLL 147
>sp|Q5R106|RNC_IDILO Ribonuclease 3 OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM
15497 / L2-TR) GN=rnc PE=3 SV=1
Length = 229
Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 12/139 (8%)
Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
THNERLEFLGD+++ + + L+ FP + EG L+ RAAIV + LA L K++GL DF+
Sbjct: 37 THNERLEFLGDSILGLVIAEALYQKFPKVAEGDLSRMRAAIVCGRSLAKLGKKMGLGDFL 96
Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF------------SSVLYK 928
G + +A+ EA++GA++LD +D QV K
Sbjct: 97 SLGQGELKSGGYRRESILADAVEAIIGAIYLDSDMDTIRQVILNWFEPQLTLIEPGTSQK 156
Query: 929 DNEVRFKQWMYYPQHPLQE 947
D + R ++ + Q PL E
Sbjct: 157 DPKTRLQELLQARQKPLPE 175
Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 966 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
L LE G F LL + T RS T+ N+RLEFLGD++L L+ ++ LY
Sbjct: 8 LTELEKIVGYSFEQQGLLHQAMTHRSASSTH-----NERLEFLGDSILGLVIAEALY 59
>sp|Q9Z9C7|RNC_CHLPN Ribonuclease 3 OS=Chlamydia pneumoniae GN=rnc PE=3 SV=1
Length = 237
Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 68/113 (60%)
Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
I +ERLEFLGDAV+ I + HLF +FP ++EG L+T RA++V + +G+ D+
Sbjct: 41 IEDSERLEFLGDAVLGLIVTEHLFLLFPSMDEGTLSTARASLVNAKACCRYTTMLGIGDY 100
Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV 932
+L G + E A AN FE+++GA++LDGG+ A ++ +L E+
Sbjct: 101 LLIGKGEKIQSERGRLSAYANLFESILGAVYLDGGLSPARKLTVPLLPPREEI 153
>sp|Q9PK97|RNC_CHLMU Ribonuclease 3 OS=Chlamydia muridarum (strain MoPn / Nigg) GN=rnc
PE=3 SV=1
Length = 232
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 55/220 (25%)
Query: 730 FHRSLNV--LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGD 787
R++N+ +E ++++ F LL ALTHPSYR F P +S
Sbjct: 1 MQRTVNIQAVESKLKFTFSQPRLLVTALTHPSYRNEF---PSDGEDS------------- 44
Query: 788 RRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFP 847
ERLEFLGDAV+ + + HLF +FP
Sbjct: 45 ------------------------------------ERLEFLGDAVLGLVVTEHLFLLFP 68
Query: 848 DIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMG 907
+ EG L+T R+A+V + + +++ L + +L G + A AN FEA++G
Sbjct: 69 SLNEGLLSTTRSALVNAEACFNYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLFEAILG 128
Query: 908 ALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
A++LDGG+ A Q+ +L + E + P++ LQ+
Sbjct: 129 AVYLDGGLAPARQIIVPLL-PNKEAILPLMLVNPKNRLQQ 167
>sp|Q6MLR5|RNC_BDEBA Ribonuclease 3 OS=Bdellovibrio bacteriovorus (strain ATCC 15356 /
DSM 50701 / NCIB 9529 / HD100) GN=rnc PE=3 SV=1
Length = 234
Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 58/182 (31%), Positives = 83/182 (45%), Gaps = 52/182 (28%)
Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
LE+R+ ++F+N LL+ ALTH S+ N L N
Sbjct: 9 LEERVGHQFKNPALLERALTHKSFA-----------NELRN------------------- 38
Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
+ HNE+LEFLGDAV++ + L+ FP EGGL+
Sbjct: 39 ----------------------TVEHNEKLEFLGDAVLDLVVGEFLYEKFPTDTEGGLSK 76
Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
RA+IV + L+ LA +GL M G L + +A+ FEA++GAL+LDGG +
Sbjct: 77 KRASIVNEEVLSELALEMGLNKLMQLGKGEALTGGAQKPRLIASSFEAIVGALYLDGGFE 136
Query: 917 VA 918
VA
Sbjct: 137 VA 138
Score = 37.0 bits (84), Expect = 0.90, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 969 LEYSSGVIFNHIRLLARVFTTRSMGYT-NLTLGSNQRLEFLGDTVLQLITSDYLY 1022
LE G F + LL R T +S T+ N++LEFLGD VL L+ ++LY
Sbjct: 9 LEERVGHQFKNPALLERALTHKSFANELRNTVEHNEKLEFLGDAVLDLVVGEFLY 63
>sp|Q823R4|RNC_CHLCV Ribonuclease 3 OS=Chlamydophila caviae (strain GPIC) GN=rnc PE=3
SV=1
Length = 237
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
+ERLEFLGDAV+ I + HLF +FP ++EG L+T RAA++ +GL + +L
Sbjct: 44 SERLEFLGDAVLCLIVTEHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEHLLI 103
Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 942
G + +E A AN FEA++GA++LDGG+ A Q+ +L ++
Sbjct: 104 GKGERIQNERGRTSAYANLFEAVLGAVYLDGGLAPARQITVPLLPSKKDIL--------- 154
Query: 943 HPLQEQEPDGDRQWVEQSPL--LKQLQYLEYSS--GVIFNHIRLLA 984
PL P Q + Q L L Q ++S GV HIR++
Sbjct: 155 -PLMLGNPKNRLQQLTQKQLRTLPVYQCTPWTSQQGVPGYHIRVIV 199
>sp|A7GRH9|RNC_BACCN Ribonuclease 3 OS=Bacillus cereus subsp. cytotoxis (strain NVH
391-98) GN=rnc PE=3 SV=1
Length = 245
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
NERLEFLGDAV+E S +LF +P + EG L RAAIV L A + +L
Sbjct: 57 NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 116
Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
G ++ E +A+ FEA +GAL+LD G+D ++Y K NE F M Y
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLDTVWGFLKEIVYPKINEGAFSHVMDYK 176
Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
LQE+ P +R++V + L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213
Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 974 GVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITSDYLY 1022
G+ F + +LL + FT S Y N N+RLEFLGD VL+L S YL+
Sbjct: 27 GITFTNEKLLIQAFTHSS--YVNEHRKKPHEDNERLEFLGDAVLELTVSQYLF 77
>sp|Q8R9W3|RNC_THETN Ribonuclease 3 OS=Thermoanaerobacter tengcongensis (strain DSM
15242 / JCM 11007 / NBRC 100824 / MB4) GN=rnc PE=3 SV=1
Length = 228
Score = 84.3 bits (207), Expect = 4e-15, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 83/155 (53%), Gaps = 18/155 (11%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
NERLEFLGD+V+ + S +L+ D+EEG L+ YRA IV LA A++I L F+
Sbjct: 39 NERLEFLGDSVLSLVISEYLYKNRKDLEEGSLSKYRAEIVCEPSLARCARKIELGSFLRM 98
Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGI------------DVADQVFSSVLYKDN 930
G ++ + +A+ EAL+ A++LDGG+ ++ D+V ++Y+D
Sbjct: 99 GKGEEISGGRDRDSILADAMEALLAAVYLDGGLEAVRRVILDLFKEIIDEVLKGIIYRDY 158
Query: 931 EVRFKQWMYYPQ------HPLQEQEPDGDRQWVEQ 959
+ R ++ + + ++E PD ++ +V Q
Sbjct: 159 KTRLQEVVQSMEVGKITYELVEEIGPDHNKTFVTQ 193
Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 966 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG-SNQRLEFLGDTVLQLITSDYLY 1022
L YLE F LL T S + SN+RLEFLGD+VL L+ S+YLY
Sbjct: 2 LTYLEQKINYEFKDKTLLLEALTHSSWAHEGKNEKVSNERLEFLGDSVLSLVISEYLY 59
>sp|B9LB70|RNC_CHLSY Ribonuclease 3 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM
637 / Y-400-fl) GN=rnc PE=3 SV=1
Length = 244
Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 52/159 (32%), Positives = 87/159 (54%), Gaps = 22/159 (13%)
Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
+++T NERLEFLGD+V+ F+T+ LF FPD +E L +RAA+V + LA A + L
Sbjct: 40 NHLTDNERLEFLGDSVLHFVTTTWLFETFPDQDEATLTNWRAALVSTKGLAECAAQFNLG 99
Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVF--- 922
+ + G D + +A+ FEAL+GA++LD G++ A +Q+
Sbjct: 100 QYAYLSRGEDNPGGRSRQKLLADLFEALVGAIYLDQGLETARAFIVPFWQARIEQIIHID 159
Query: 923 ---SSVLYKDNEVRFKQWMYYPQHPLQEQE-PDGDRQWV 957
++ L + + RFKQ P + ++E+ P+ R++V
Sbjct: 160 LDPTTRLQELMQARFKQ---LPDYSIEEERGPEHQREYV 195
Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 965 QLQYLEYSSGVIFNHIRLLARVFTTRSM----GYTNLTLGSNQRLEFLGDTVLQLITSDY 1020
+L LE + G+ F LL F RS+ + L N+RLEFLGD+VL +T+ +
Sbjct: 4 RLAELERAIGITFRDRTLLQTAFMHRSLFNEQPHLLNHLTDNERLEFLGDSVLHFVTTTW 63
Query: 1021 LY 1022
L+
Sbjct: 64 LF 65
>sp|A9WJ69|RNC_CHLAA Ribonuclease 3 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM
635 / J-10-fl) GN=rnc PE=3 SV=1
Length = 244
Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 52/159 (32%), Positives = 87/159 (54%), Gaps = 22/159 (13%)
Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
+++T NERLEFLGD+V+ F+T+ LF FPD +E L +RAA+V + LA A + L
Sbjct: 40 NHLTDNERLEFLGDSVLHFVTTTWLFETFPDQDEATLTNWRAALVSTKGLAECAAQFNLG 99
Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVF--- 922
+ + G D + +A+ FEAL+GA++LD G++ A +Q+
Sbjct: 100 QYAYLSRGEDNPGGRSRQKLLADLFEALVGAIYLDQGLETARAFIVPFWQARIEQIIHID 159
Query: 923 ---SSVLYKDNEVRFKQWMYYPQHPLQEQE-PDGDRQWV 957
++ L + + RFKQ P + ++E+ P+ R++V
Sbjct: 160 LDPTTRLQELMQARFKQ---LPDYSIEEERGPEHQREYV 195
Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 965 QLQYLEYSSGVIFNHIRLLARVFTTRSM----GYTNLTLGSNQRLEFLGDTVLQLITSDY 1020
+L LE + G+ F LL F RS+ + L N+RLEFLGD+VL +T+ +
Sbjct: 4 RLAELERAIGITFRDRTLLQTAFMHRSLFNEQPHLLNHLTDNERLEFLGDSVLHFVTTTW 63
Query: 1021 LY 1022
L+
Sbjct: 64 LF 65
>sp|Q310Z1|RNC_DESDG Ribonuclease 3 OS=Desulfovibrio desulfuricans (strain G20) GN=rnc
PE=3 SV=1
Length = 229
Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 60/192 (31%), Positives = 82/192 (42%), Gaps = 56/192 (29%)
Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTR 796
L+D + Y+F + LL+ ALTH SY GT
Sbjct: 5 LQDVLCYRFADVRLLETALTHSSYANERGTE----------------------------- 35
Query: 797 KRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLAT 856
I HNERLE+LGDAV+E S LF FP+ EG L
Sbjct: 36 -----------------------IEHNERLEYLGDAVLELTVSEQLFTRFPEAREGQLTR 72
Query: 857 YRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
RA +V LA LA+ + L+ ++L G + +++ FEA++GA+FLDGG
Sbjct: 73 MRARLVSKPSLAELARELKLDTYLLLGKGEESQGGRTRSSVLSDAFEAILGAIFLDGGYA 132
Query: 917 VADQ----VFSS 924
A + VFSS
Sbjct: 133 AAGKTVLHVFSS 144
>sp|B0B7L3|RNC_CHLT2 Ribonuclease 3 OS=Chlamydia trachomatis serovar L2 (strain 434/Bu /
ATCC VR-902B) GN=rnc PE=3 SV=1
Length = 231
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 1/125 (0%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
+ERLEFLGDAV+ + + HLF +FP + EG L+T RAA+V + +++ L + +L
Sbjct: 44 SERLEFLGDAVLGLVVTEHLFLLFPALNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLI 103
Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 942
G + A AN FEA++GA++LDGG+ A Q+ +L D E + P+
Sbjct: 104 GRGEKMQSHRGKISAYANLFEAILGAVYLDGGLSPARQIIVPLL-PDKESILPLMLVNPK 162
Query: 943 HPLQE 947
+ LQ+
Sbjct: 163 NRLQQ 167
Score = 33.5 bits (75), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 966 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS---NQRLEFLGDTVLQLITSDYLY 1022
+Q +E F+H RLL T S Y N + ++RLEFLGD VL L+ +++L+
Sbjct: 7 IQAIESKLNFTFSHPRLLITALTHPS--YRNEFPSAEEDSERLEFLGDAVLGLVVTEHLF 64
>sp|B0BBS8|RNC_CHLTB Ribonuclease 3 OS=Chlamydia trachomatis serovar L2b (strain
UCH-1/proctitis) GN=rnc PE=3 SV=1
Length = 231
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 1/125 (0%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
+ERLEFLGDAV+ + + HLF +FP + EG L+T RAA+V + +++ L + +L
Sbjct: 44 SERLEFLGDAVLGLVVTEHLFLLFPALNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLI 103
Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 942
G + A AN FEA++GA++LDGG+ A Q+ +L D E + P+
Sbjct: 104 GRGEKMQSHRGKISAYANLFEAILGAVYLDGGLSPARQIIVPLL-PDKESILPLMLVNPK 162
Query: 943 HPLQE 947
+ LQ+
Sbjct: 163 NRLQQ 167
Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 966 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS---NQRLEFLGDTVLQLITSDYLY 1022
+Q +E F+H RLL T S Y N + ++RLEFLGD VL L+ +++L+
Sbjct: 7 IQAIESKLNFTFSHPRLLITALTHSS--YRNEFPSAEEDSERLEFLGDAVLGLVVTEHLF 64
>sp|B9IVD8|RNC_BACCQ Ribonuclease 3 OS=Bacillus cereus (strain Q1) GN=rnc PE=3 SV=1
Length = 245
Score = 83.2 bits (204), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
NERLEFLGDAV+E S +LF +P + EG L RAAIV L A + +L
Sbjct: 57 NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 116
Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
G ++ E +A+ FEA +GAL+LD G++ ++Y K NE F M Y
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYK 176
Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
LQE+ P +R++V + L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213
Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 974 GVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITSDYLY 1022
G+ F +LL + FT S Y N N+RLEFLGD VL+L S YL+
Sbjct: 27 GITFTDEKLLIQAFTHSS--YVNEHRKKPHEDNERLEFLGDAVLELTVSQYLF 77
>sp|B7HLI2|RNC_BACC7 Ribonuclease 3 OS=Bacillus cereus (strain AH187) GN=rnc PE=3 SV=1
Length = 245
Score = 83.2 bits (204), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
NERLEFLGDAV+E S +LF +P + EG L RAAIV L A + +L
Sbjct: 57 NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 116
Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
G ++ E +A+ FEA +GAL+LD G++ ++Y K NE F M Y
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYK 176
Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
LQE+ P +R++V + L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213
Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 974 GVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITSDYLY 1022
G+ F +LL + FT S Y N N+RLEFLGD VL+L S YL+
Sbjct: 27 GITFTDEKLLIQAFTHSS--YVNEHRKKPHEDNERLEFLGDAVLELTVSQYLF 77
>sp|Q732M1|RNC_BACC1 Ribonuclease 3 OS=Bacillus cereus (strain ATCC 10987) GN=rnc PE=3
SV=1
Length = 245
Score = 83.2 bits (204), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
NERLEFLGDAV+E S +LF +P + EG L RAAIV L A + +L
Sbjct: 57 NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 116
Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
G ++ E +A+ FEA +GAL+LD G++ ++Y K NE F M Y
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYK 176
Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
LQE+ P +R++V + L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213
Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 974 GVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITSDYLY 1022
G+ F +LL + FT S Y N N+RLEFLGD VL+L S YL+
Sbjct: 27 GITFTDEKLLIQAFTHSS--YVNEHRKKPHEDNERLEFLGDAVLELTVSQYLF 77
>sp|Q6HEW6|RNC_BACHK Ribonuclease 3 OS=Bacillus thuringiensis subsp. konkukian (strain
97-27) GN=rnc PE=3 SV=1
Length = 245
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
NERLEFLGDAV+E S +LF +P + EG L RAAIV L A + +L
Sbjct: 57 NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 116
Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
G ++ E +A+ FEA +GAL+LD G++ ++Y K NE F M Y
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYK 176
Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
LQE+ P +R++V + L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213
Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 974 GVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITSDYLY 1022
G+ F +LL + FT S Y N N+RLEFLGD VL+L S YL+
Sbjct: 27 GITFTDEKLLIQAFTHSS--YVNEHRKKPHEDNERLEFLGDAVLELTVSQYLF 77
>sp|C1EP73|RNC_BACC3 Ribonuclease 3 OS=Bacillus cereus (strain 03BB102) GN=rnc PE=3 SV=1
Length = 245
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
NERLEFLGDAV+E S +LF +P + EG L RAAIV L A + +L
Sbjct: 57 NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 116
Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
G ++ E +A+ FEA +GAL+LD G++ ++Y K NE F M Y
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYK 176
Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
LQE+ P +R++V + L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213
Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 974 GVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITSDYLY 1022
G+ F +LL + FT S Y N N+RLEFLGD VL+L S YL+
Sbjct: 27 GITFTDEKLLIQAFTHSS--YVNEHRKKPHEDNERLEFLGDAVLELTVSQYLF 77
>sp|B7JJT6|RNC_BACC0 Ribonuclease 3 OS=Bacillus cereus (strain AH820) GN=rnc PE=3 SV=1
Length = 245
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
NERLEFLGDAV+E S +LF +P + EG L RAAIV L A + +L
Sbjct: 57 NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 116
Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
G ++ E +A+ FEA +GAL+LD G++ ++Y K NE F M Y
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYK 176
Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
LQE+ P +R++V + L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213
Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 974 GVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITSDYLY 1022
G+ F +LL + FT S Y N N+RLEFLGD VL+L S YL+
Sbjct: 27 GITFTDEKLLIQAFTHSS--YVNEHRKKPHEDNERLEFLGDAVLELTVSQYLF 77
>sp|Q81WI8|RNC_BACAN Ribonuclease 3 OS=Bacillus anthracis GN=rnc PE=3 SV=1
Length = 245
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
NERLEFLGDAV+E S +LF +P + EG L RAAIV L A + +L
Sbjct: 57 NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 116
Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
G ++ E +A+ FEA +GAL+LD G++ ++Y K NE F M Y
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYK 176
Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
LQE+ P +R++V + L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213
Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 974 GVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITSDYLY 1022
G+ F +LL + FT S Y N N+RLEFLGD VL+L S YL+
Sbjct: 27 GITFTDEKLLIQAFTHSS--YVNEHRKKPHEDNERLEFLGDAVLELTVSQYLF 77
>sp|C3L778|RNC_BACAC Ribonuclease 3 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495)
GN=rnc PE=3 SV=1
Length = 245
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
NERLEFLGDAV+E S +LF +P + EG L RAAIV L A + +L
Sbjct: 57 NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 116
Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
G ++ E +A+ FEA +GAL+LD G++ ++Y K NE F M Y
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYK 176
Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
LQE+ P +R++V + L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213
Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 974 GVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITSDYLY 1022
G+ F +LL + FT S Y N N+RLEFLGD VL+L S YL+
Sbjct: 27 GITFTDEKLLIQAFTHSS--YVNEHRKKPHEDNERLEFLGDAVLELTVSQYLF 77
>sp|C3P5Q0|RNC_BACAA Ribonuclease 3 OS=Bacillus anthracis (strain A0248) GN=rnc PE=3
SV=1
Length = 245
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
NERLEFLGDAV+E S +LF +P + EG L RAAIV L A + +L
Sbjct: 57 NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 116
Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
G ++ E +A+ FEA +GAL+LD G++ ++Y K NE F M Y
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYK 176
Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
LQE+ P +R++V + L
Sbjct: 177 SQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTL 213
Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 974 GVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITSDYLY 1022
G+ F +LL + FT S Y N N+RLEFLGD VL+L S YL+
Sbjct: 27 GITFTDEKLLIQAFTHSS--YVNEHRKKPHEDNERLEFLGDAVLELTVSQYLF 77
>sp|A9VT87|RNC_BACWK Ribonuclease 3 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rnc
PE=3 SV=1
Length = 245
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
NERLEFLGDAV+E S +LF +P + EG L RAAIV L A + +L
Sbjct: 57 NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLL 116
Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
G ++ E +A+ FEA +GAL+LD G++ V+Y K NE F M Y
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGYLKEVVYPKINEGAFSHVMDYK 176
Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
LQE+ P +R++V + L
Sbjct: 177 SQLQELIQRDGSGNVEYQILQEKGPAHNREFVSRVTL 213
Score = 37.7 bits (86), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 974 GVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITSDYLY 1022
G+ F +LL + FT S Y N N+RLEFLGD VL+L S YL+
Sbjct: 27 GITFTDEKLLIQAFTHSS--YVNEHRKKPHEDNERLEFLGDAVLELTVSQYLF 77
>sp|Q3A4Q8|RNC_PELCD Ribonuclease 3 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd
1) GN=rnc PE=3 SV=1
Length = 232
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 82/197 (41%), Gaps = 55/197 (27%)
Query: 732 RSLNVLEDRIQYKFQNRYLLQLALTHPSY--RENFGTNPDHARNSLSNCGVRQPEYGDRR 789
+S +LED I Y F N+ LL ALTH S+ +N T PD
Sbjct: 5 KSAALLEDTIDYVFDNQALLLEALTHKSFSNEQNDRTEPD-------------------- 44
Query: 790 IHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDI 849
NERLEFLGDAV+ + S ++F FP +
Sbjct: 45 ---------------------------------NERLEFLGDAVLGVVVSHYIFRTFPHL 71
Query: 850 EEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGAL 909
EG L R+ +V + L + K I L D+M G + + +AN EAL+GA+
Sbjct: 72 PEGELTRIRSEVVSEKGLTVIGKAICLGDYMRLGKGEERSGGRQKSSLLANTMEALLGAV 131
Query: 910 FLDGGIDVADQVFSSVL 926
F DGG D +V ++
Sbjct: 132 FCDGGFDSVRRVIEALF 148
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 964 KQLQYLEYSSGVIFNHIRLLARVFTTRSMG--YTNLTLGSNQRLEFLGDTVLQLITSDYL 1021
K LE + +F++ LL T +S + T N+RLEFLGD VL ++ S Y+
Sbjct: 5 KSAALLEDTIDYVFDNQALLLEALTHKSFSNEQNDRTEPDNERLEFLGDAVLGVVVSHYI 64
Query: 1022 Y 1022
+
Sbjct: 65 F 65
>sp|Q6LMS2|RNC_PHOPR Ribonuclease 3 OS=Photobacterium profundum GN=rnc PE=3 SV=1
Length = 224
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 63/107 (58%)
Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
+N HNERLEFLGD+++ F+ + L+H FP ++EG ++ RA +V+ + LA L + L
Sbjct: 31 ANGKHNERLEFLGDSILSFVIADDLYHRFPHVDEGDMSRMRATLVRGKTLAELGREFELG 90
Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS 924
D++L G +A+C EA++GA++LD + +V S
Sbjct: 91 DYLLLGPGELKSGGFRRDSILADCVEAIIGAIYLDSDTEQVRKVILS 137
Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 969 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
L+ G FN L+ T RS + N+RLEFLGD++L + +D LY
Sbjct: 8 LQRRLGYQFNSSELMTLSLTHRSANGKH-----NERLEFLGDSILSFVIADDLY 56
>sp|A0L633|RNC_MAGSM Ribonuclease 3 OS=Magnetococcus sp. (strain MC-1) GN=rnc PE=3 SV=1
Length = 246
Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 62/188 (32%), Positives = 85/188 (45%), Gaps = 47/188 (25%)
Query: 734 LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQ 793
L LE + Y+F LLQLALTH S P G
Sbjct: 10 LERLEQALDYRFTQSDLLQLALTHRS----------------------APLDG------- 40
Query: 794 NTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGG 853
SK G VAT THNERLEFLGD+V+ I S L+ F ++ EG
Sbjct: 41 --------------SKAGEVVAT----THNERLEFLGDSVLNLIVSHRLYKRFGEVPEGQ 82
Query: 854 LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 913
L+ +RA +V + L+ +AK + L ++ G E + N EAL+GA++LDG
Sbjct: 83 LSQWRAMLVNTRSLSEVAKDLELGRYLRMGRGEAKSGGREKYSILGNALEALLGAIYLDG 142
Query: 914 GIDVADQV 921
G + A++V
Sbjct: 143 GFEAAERV 150
Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 966 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS------NQRLEFLGDTVLQLITSD 1019
L+ LE + F LL T RS G N+RLEFLGD+VL LI S
Sbjct: 10 LERLEQALDYRFTQSDLLQLALTHRSAPLDGSKAGEVVATTHNERLEFLGDSVLNLIVSH 69
Query: 1020 YLY 1022
LY
Sbjct: 70 RLY 72
>sp|B8GAM6|RNC_CHLAD Ribonuclease 3 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485)
GN=rnc PE=3 SV=1
Length = 229
Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 16/156 (10%)
Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
SN++ NERLEFLGD+V+ F+T+ LF FP E L ++RAA+V + LA A + L
Sbjct: 40 SNLSDNERLEFLGDSVLHFVTTTWLFQQFPHQNESTLTSWRAALVSTKGLAECAATLNLG 99
Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK--------- 928
+ + G D + +A+ FEA++GA++LD G++ A L++
Sbjct: 100 QYAFLSRGEDTPKGRQRSKLLADLFEAVIGAIYLDQGLEAARAFIEPFLHERIGTLQTAV 159
Query: 929 -DNEVRFKQWMY--YPQHP----LQEQEPDGDRQWV 957
D R ++ + + Q P + E+ PD R++V
Sbjct: 160 LDPTTRLQEIVQSRHKQLPKYYLIDERGPDHQREYV 195
Score = 40.4 bits (93), Expect = 0.080, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 962 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSM----GYTNLTLGSNQRLEFLGDTVLQLIT 1017
++++L LE + G+ F +LL RS+ + L N+RLEFLGD+VL +T
Sbjct: 1 MVERLAELERALGITFRDRKLLQTALMHRSLFNEQPHLLSNLSDNERLEFLGDSVLHFVT 60
Query: 1018 SDYLY 1022
+ +L+
Sbjct: 61 TTWLF 65
>sp|Q8DC76|RNC_VIBVU Ribonuclease 3 OS=Vibrio vulnificus (strain CMCP6) GN=rnc PE=3 SV=1
Length = 225
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 12/140 (8%)
Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
+N HNERLEFLGD+++ F+ + L+H FP + EG ++ RA +V+ LA L + GL
Sbjct: 31 ANSKHNERLEFLGDSILSFVIADELYHRFPKVNEGDMSRMRATLVRGNTLAELGREFGLG 90
Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSV 925
D++ G +A+ EA++GA++LD ++V + + V
Sbjct: 91 DYLKLGPGELKSGGFRRDSILADAVEAIIGAVYLDSDLEVVRGIVLNWYTSRLEAIKPGV 150
Query: 926 LYKDNEVRFKQWMYYPQHPL 945
KD + R ++++ + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170
Score = 33.5 bits (75), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 960 SPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSD 1019
SP+ K + L Y F LL T RS + N+RLEFLGD++L + +D
Sbjct: 3 SPIEKLTRQLGYQ----FQDDELLNLALTHRSANSKH-----NERLEFLGDSILSFVIAD 53
Query: 1020 YLY 1022
LY
Sbjct: 54 ELY 56
>sp|Q819V8|RNC_BACCR Ribonuclease 3 OS=Bacillus cereus (strain ATCC 14579 / DSM 31)
GN=rnc PE=3 SV=1
Length = 245
Score = 82.0 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 75/157 (47%), Gaps = 17/157 (10%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
NERLEFLGDAV+E S +LF +P + EG L RAAIV L A + +L
Sbjct: 57 NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 116
Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
G ++ E +A+ FEA +GAL+LD G++ + ++Y K NE F M Y
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWEFLKEIVYPKINEGAFSHVMDYK 176
Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
LQE+ P +R++V + L
Sbjct: 177 SQLQELIQRDGSGNVEYQILQEKGPAHNREFVSRVTL 213
Score = 37.0 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 974 GVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITSDYLY 1022
G+ F +LL + FT S Y N N+RLEFLGD VL+L S YL+
Sbjct: 27 GITFTDEKLLIQAFTHSS--YVNEHRKKPHEDNERLEFLGDAVLELTVSQYLF 77
>sp|B7HDX2|RNC_BACC4 Ribonuclease 3 OS=Bacillus cereus (strain B4264) GN=rnc PE=3 SV=1
Length = 245
Score = 82.0 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 75/157 (47%), Gaps = 17/157 (10%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
NERLEFLGDAV+E S +LF +P + EG L RAAIV L A + +L
Sbjct: 57 NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 116
Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
G ++ E +A+ FEA +GAL+LD G++ + ++Y K NE F M Y
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWEFLKEIVYPKINEGAFSHVMDYK 176
Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
LQE+ P +R++V + L
Sbjct: 177 SQLQELIQRDGSGNVEYQILQEKGPAHNREFVSRVTL 213
Score = 37.0 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 974 GVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITSDYLY 1022
G+ F +LL + FT S Y N N+RLEFLGD VL+L S YL+
Sbjct: 27 GITFTDEKLLIQAFTHSS--YVNEHRKKPHEDNERLEFLGDAVLELTVSQYLF 77
>sp|B7IUK8|RNC_BACC2 Ribonuclease 3 OS=Bacillus cereus (strain G9842) GN=rnc PE=3 SV=1
Length = 245
Score = 82.0 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 75/157 (47%), Gaps = 17/157 (10%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
NERLEFLGDAV+E S +LF +P + EG L RAAIV L A + +L
Sbjct: 57 NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 116
Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
G ++ E +A+ FEA +GAL+LD G++ + ++Y K NE F M Y
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWEFLKEIVYPKINEGAFSHVMDYK 176
Query: 942 Q----------------HPLQEQEPDGDRQWVEQSPL 962
LQE+ P +R++V + L
Sbjct: 177 SQLQELIQRDGSGNVEYQILQEKGPAHNREFVSRVTL 213
Score = 37.0 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 974 GVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITSDYLY 1022
G+ F +LL + FT S Y N N+RLEFLGD VL+L S YL+
Sbjct: 27 GITFTDEKLLIQAFTHSS--YVNEHRKKPHEDNERLEFLGDAVLELTVSQYLF 77
>sp|Q7MHN8|RNC_VIBVY Ribonuclease 3 OS=Vibrio vulnificus (strain YJ016) GN=rnc PE=3 SV=2
Length = 225
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 12/140 (8%)
Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
+N HNERLEFLGD+++ F+ + L+H FP + EG ++ RA +V+ LA L + GL
Sbjct: 31 ANSKHNERLEFLGDSILSFVIADELYHRFPKVNEGDMSRMRATLVRGNTLAELGREFGLG 90
Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSV 925
D++ G +A+ EA++GA++LD ++V + + V
Sbjct: 91 DYLKLGPGELKSGGFRRDSILADAVEAIIGAVYLDSDLEVVRGIVLNWYASRLEAIKPGV 150
Query: 926 LYKDNEVRFKQWMYYPQHPL 945
KD + R ++++ + PL
Sbjct: 151 SQKDPKTRLQEFLQGRRKPL 170
Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 960 SPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSD 1019
SP+ K + L Y F LL T RS + N+RLEFLGD++L + +D
Sbjct: 3 SPIEKLTRQLGYQ----FQDDELLNLALTHRSANSKH-----NERLEFLGDSILSFVIAD 53
Query: 1020 YLY 1022
LY
Sbjct: 54 ELY 56
>sp|A7NGC5|RNC_ROSCS Ribonuclease 3 OS=Roseiflexus castenholzii (strain DSM 13941 /
HLO8) GN=rnc PE=3 SV=1
Length = 234
Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 9/139 (6%)
Query: 778 CGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFI 837
C + D+R+ +Q R S L +V ++ NERLEFLGDA+V F+
Sbjct: 9 CARLDVTFSDQRLLWQALTHR---------SFLNERVDERLSLFSNERLEFLGDAIVNFL 59
Query: 838 TSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHA 897
+ +F FPD EG L +RAA+++ + LA A+R L L A G + +
Sbjct: 60 ATTLVFERFPDAGEGYLTAWRAALIRTETLASFARRYDLGSHTLLARGEESSGARQRPSL 119
Query: 898 MANCFEALMGALFLDGGID 916
+A+ FEA++ A+F+D G+D
Sbjct: 120 LADTFEAVVAAIFIDQGLD 138
>sp|Q4L5T5|RNC_STAHJ Ribonuclease 3 OS=Staphylococcus haemolyticus (strain JCSC1435)
GN=rnc PE=3 SV=1
Length = 245
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 59/108 (54%)
Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
+ HNERLEFLGDAV+E S +LF PD+ EG L RA IV L A +I L
Sbjct: 52 LAHNERLEFLGDAVLELTVSRYLFDKHPDLPEGNLTKMRATIVCEPSLVIFANKIELNQL 111
Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
+L G + +++ FEA +GAL+LD G+DV Q V++
Sbjct: 112 ILLGKGEEKTGGRTRPSLVSDAFEAFVGALYLDQGLDVVWQFAEKVIF 159
Score = 37.0 bits (84), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 974 GVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
G +++I L + F+ S + L N+RLEFLGD VL+L S YL+
Sbjct: 25 GFTYSNIDLYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSRYLF 75
>sp|Q5M3S3|RNC_STRT2 Ribonuclease 3 OS=Streptococcus thermophilus (strain ATCC BAA-250 /
LMG 18311) GN=rnc PE=3 SV=1
Length = 237
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 65/108 (60%)
Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
NI+HNERLEFLGDA ++ + S++L++ +P+ EG ++ R+ IV+ + LA K G E
Sbjct: 47 NISHNERLEFLGDAALQLVISVYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQ 106
Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
++ G + E + + +EA +GAL+LD G+ ++ + V+
Sbjct: 107 YIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGLPAVEKFLNQVM 154
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 967 QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
Q LE G++F+ LL FT S Y N L + N+RLEFLGD LQL+ S YLY
Sbjct: 14 QKLEQDFGIVFSQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAALQLVISVYLY 71
>sp|Q5LZ68|RNC_STRT1 Ribonuclease 3 OS=Streptococcus thermophilus (strain CNRZ 1066)
GN=rnc PE=3 SV=1
Length = 237
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 65/108 (60%)
Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
NI+HNERLEFLGDA ++ + S++L++ +P+ EG ++ R+ IV+ + LA K G E
Sbjct: 47 NISHNERLEFLGDAALQLVISVYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQ 106
Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
++ G + E + + +EA +GAL+LD G+ ++ + V+
Sbjct: 107 YIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGLPAVEKFLNQVM 154
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 967 QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
Q LE G++F+ LL FT S Y N L + N+RLEFLGD LQL+ S YLY
Sbjct: 14 QKLEQDFGIVFSQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAALQLVISVYLY 71
>sp|Q492D1|RNC_BLOPB Ribonuclease 3 OS=Blochmannia pennsylvanicus (strain BPEN) GN=rnc
PE=3 SV=1
Length = 229
Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 15/143 (10%)
Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
S+ HNERLEFLGDA++ ++ + L+H FP I EGG++ RA +V+ LA LA+ L
Sbjct: 29 SSNQHNERLEFLGDAILNYVIANLLYHRFPHISEGGMSRMRANLVRENTLATLAREFNLG 88
Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGG---------------IDVADQVF 922
D++ G + + +AN EAL+G +FLD ID D
Sbjct: 89 DYLQLGQGELKSGGYQRESILANTIEALIGGIFLDSNIQTIEILIINWYKIRIDHMDPYA 148
Query: 923 SSVLYKDNEVRFKQWMYYPQHPL 945
S KD + R +++M + PL
Sbjct: 149 SYDTQKDPKTRLQEYMQRRRLPL 171
Score = 37.4 bits (85), Expect = 0.65, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 969 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
L+ G IFN LL + T RS + N+RLEFLGD +L + ++ LY
Sbjct: 6 LQEKLGYIFNRYDLLLQALTHRSSSNQH-----NERLEFLGDAILNYVIANLLY 54
>sp|Q03K17|RNC_STRTD Ribonuclease 3 OS=Streptococcus thermophilus (strain ATCC BAA-491 /
LMD-9) GN=rnc PE=3 SV=1
Length = 229
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 65/108 (60%)
Query: 819 NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED 878
NI+HNERLEFLGDA ++ + S++L++ +P+ EG ++ R+ IV+ + LA K G E
Sbjct: 39 NISHNERLEFLGDAALQLVISVYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQ 98
Query: 879 FMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
++ G + E + + +EA +GAL+LD G+ ++ + V+
Sbjct: 99 YIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGLPAVEKFLNQVM 146
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 967 QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 1022
Q LE G++F+ LL FT S Y N L + N+RLEFLGD LQL+ S YLY
Sbjct: 6 QKLEQDFGIVFSQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAALQLVISVYLY 63
>sp|Q931T1|RNC_STAAM Ribonuclease 3 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=rnc PE=3 SV=1
Length = 243
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 61/108 (56%)
Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
+ HNERLEFLGDAV+E S +LF P++ EG L RA IV L A +IGL +
Sbjct: 52 LDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEM 111
Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
+L G + +++ FEA +GAL+LD G+D+ + V++
Sbjct: 112 ILLGKGEEKTGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIF 159
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 974 GVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
G + +I L + F+ S + L N+RLEFLGD VL+L S YL+
Sbjct: 25 GFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLF 75
>sp|A7X1J9|RNC_STAA1 Ribonuclease 3 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698)
GN=rnc PE=3 SV=1
Length = 243
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 61/108 (56%)
Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
+ HNERLEFLGDAV+E S +LF P++ EG L RA IV L A +IGL +
Sbjct: 52 LDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEM 111
Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
+L G + +++ FEA +GAL+LD G+D+ + V++
Sbjct: 112 ILLGKGEEKTGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIF 159
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 974 GVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
G + +I L + F+ S + L N+RLEFLGD VL+L S YL+
Sbjct: 25 GFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLF 75
>sp|P66669|RNC_STAAW Ribonuclease 3 OS=Staphylococcus aureus (strain MW2) GN=rnc PE=3
SV=1
Length = 243
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 61/108 (56%)
Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
+ HNERLEFLGDAV+E S +LF P++ EG L RA IV L A +IGL +
Sbjct: 52 LDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEM 111
Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
+L G + +++ FEA +GAL+LD G+D+ + V++
Sbjct: 112 ILLGKGEEKTGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIF 159
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 974 GVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
G + +I L + F+ S + L N+RLEFLGD VL+L S YL+
Sbjct: 25 GFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLF 75
>sp|A8Z3R9|RNC_STAAT Ribonuclease 3 OS=Staphylococcus aureus (strain USA300 / TCH1516)
GN=rnc PE=3 SV=1
Length = 243
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 61/108 (56%)
Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
+ HNERLEFLGDAV+E S +LF P++ EG L RA IV L A +IGL +
Sbjct: 52 LDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEM 111
Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
+L G + +++ FEA +GAL+LD G+D+ + V++
Sbjct: 112 ILLGKGEEKTGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIF 159
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 974 GVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
G + +I L + F+ S + L N+RLEFLGD VL+L S YL+
Sbjct: 25 GFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLF 75
>sp|Q6G9Y0|RNC_STAAS Ribonuclease 3 OS=Staphylococcus aureus (strain MSSA476) GN=rnc
PE=3 SV=1
Length = 243
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 61/108 (56%)
Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
+ HNERLEFLGDAV+E S +LF P++ EG L RA IV L A +IGL +
Sbjct: 52 LDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEM 111
Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
+L G + +++ FEA +GAL+LD G+D+ + V++
Sbjct: 112 ILLGKGEEKTGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIF 159
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 974 GVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
G + +I L + F+ S + L N+RLEFLGD VL+L S YL+
Sbjct: 25 GFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLF 75
>sp|Q6GHK2|RNC_STAAR Ribonuclease 3 OS=Staphylococcus aureus (strain MRSA252) GN=rnc
PE=3 SV=1
Length = 243
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 61/108 (56%)
Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
+ HNERLEFLGDAV+E S +LF P++ EG L RA IV L A +IGL +
Sbjct: 52 LDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEM 111
Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
+L G + +++ FEA +GAL+LD G+D+ + V++
Sbjct: 112 ILLGKGEEKTGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIF 159
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 974 GVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
G + +I L + F+ S + L N+RLEFLGD VL+L S YL+
Sbjct: 25 GFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLF 75
>sp|P66668|RNC_STAAN Ribonuclease 3 OS=Staphylococcus aureus (strain N315) GN=rnc PE=1
SV=1
Length = 243
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 61/108 (56%)
Query: 820 ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879
+ HNERLEFLGDAV+E S +LF P++ EG L RA IV L A +IGL +
Sbjct: 52 LDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEM 111
Query: 880 MLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
+L G + +++ FEA +GAL+LD G+D+ + V++
Sbjct: 112 ILLGKGEEKTGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIF 159
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 974 GVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
G + +I L + F+ S + L N+RLEFLGD VL+L S YL+
Sbjct: 25 GFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLF 75
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 382,784,632
Number of Sequences: 539616
Number of extensions: 16633039
Number of successful extensions: 70338
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 504
Number of HSP's that attempted gapping in prelim test: 55909
Number of HSP's gapped (non-prelim): 8117
length of query: 1022
length of database: 191,569,459
effective HSP length: 128
effective length of query: 894
effective length of database: 122,498,611
effective search space: 109513758234
effective search space used: 109513758234
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)