Query psy14776
Match_columns 1022
No_of_seqs 370 out of 2325
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 20:19:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14776.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14776hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1817|consensus 100.0 8.2E-66 1.8E-70 564.9 16.1 331 692-1022 1-331 (533)
2 COG0571 Rnc dsRNA-specific rib 100.0 3.1E-31 6.6E-36 280.0 12.9 145 731-928 5-149 (235)
3 PRK12371 ribonuclease III; Rev 100.0 4E-31 8.7E-36 279.0 12.2 142 731-927 9-150 (235)
4 PRK14718 ribonuclease III; Pro 100.0 2.2E-30 4.8E-35 290.5 11.6 136 734-927 3-138 (467)
5 PRK12372 ribonuclease III; Rev 100.0 2.5E-30 5.5E-35 288.5 11.5 136 734-927 3-138 (413)
6 PRK00102 rnc ribonuclease III; 100.0 4.1E-28 9E-33 251.5 14.0 143 732-927 3-145 (229)
7 TIGR02191 RNaseIII ribonucleas 99.9 2.7E-27 5.9E-32 243.4 13.2 140 737-928 1-140 (220)
8 PF14622 Ribonucleas_3_3: Ribo 99.9 3.5E-27 7.5E-32 227.1 8.5 107 821-928 20-126 (128)
9 smart00535 RIBOc Ribonuclease 99.9 2.1E-24 4.6E-29 204.5 12.0 106 822-927 18-123 (129)
10 cd00593 RIBOc RIBOc. Ribonucle 99.9 7.4E-24 1.6E-28 200.7 11.8 107 821-927 19-125 (133)
11 KOG1817|consensus 99.8 3.1E-21 6.8E-26 214.3 10.6 142 734-929 275-416 (533)
12 PF00636 Ribonuclease_3: Ribon 99.8 8.6E-21 1.9E-25 177.0 8.9 91 824-914 1-114 (114)
13 KOG0701|consensus 99.8 1.7E-19 3.7E-24 225.8 10.7 222 731-1022 978-1269(1606)
14 KOG0701|consensus 99.6 2.6E-15 5.7E-20 188.8 7.3 216 728-1022 1207-1426(1606)
15 COG0571 Rnc dsRNA-specific rib 99.5 4.6E-14 9.9E-19 150.2 5.5 59 964-1022 6-64 (235)
16 PRK12371 ribonuclease III; Rev 99.4 2.4E-13 5.1E-18 144.5 5.7 57 964-1022 10-66 (235)
17 PRK00102 rnc ribonuclease III; 99.3 1.5E-12 3.2E-17 135.8 5.5 59 964-1022 3-61 (229)
18 KOG3769|consensus 98.7 1.1E-07 2.3E-12 104.1 13.7 200 728-986 59-258 (333)
19 COG1939 Ribonuclease III famil 96.8 0.0059 1.3E-07 60.8 9.0 100 824-926 16-127 (132)
20 PF11469 Ribonucleas_3_2: Ribo 81.1 7.6 0.00017 38.2 7.9 81 826-925 3-87 (120)
21 KOG4368|consensus 65.5 4.3 9.4E-05 49.3 2.6 9 262-270 695-703 (757)
22 KOG4368|consensus 54.6 7.5 0.00016 47.4 2.1 13 124-136 576-588 (757)
23 PF14622 Ribonucleas_3_3: Ribo 50.2 5.1 0.00011 39.3 -0.1 16 979-994 1-16 (128)
24 PF04889 Cwf_Cwc_15: Cwf15/Cwc 38.7 26 0.00056 38.9 3.1 17 359-375 143-159 (244)
25 PF06200 tify: tify domain; I 29.3 51 0.0011 26.9 2.5 19 450-468 5-23 (36)
26 PF08279 HTH_11: HTH domain; 27.6 84 0.0018 26.1 3.7 39 560-599 3-41 (55)
27 COG3001 Uncharacterized protei 25.0 51 0.0011 37.3 2.4 41 364-404 173-213 (286)
28 PF11430 EGL-1: Programmed cel 24.7 75 0.0016 23.3 2.3 14 289-302 5-18 (21)
29 PF05117 DUF695: Family of unk 23.5 1.2E+02 0.0026 30.0 4.6 41 588-636 3-43 (136)
30 PRK02287 hypothetical protein; 22.0 83 0.0018 33.5 3.2 30 899-928 107-136 (171)
No 1
>KOG1817|consensus
Probab=100.00 E-value=8.2e-66 Score=564.85 Aligned_cols=331 Identities=60% Similarity=0.999 Sum_probs=323.5
Q ss_pred eecceEEEEecCcccccCcChHHHHHHhhhhhhhhhhhhhHHHHHHHHHhCCCcCCHHHHHHHhhCCCcccccCCCCccc
Q psy14776 692 MKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHA 771 (1022)
Q Consensus 692 ~~r~i~~~Ls~e~f~~tgI~~Dv~q~alllPsii~~ir~~~~L~~LE~~LGY~FkD~~LL~eALTHpSy~~~~G~~Pd~a 771 (1022)
|+|++++++|++||+.|||++||+|||||+|+++|||||+.+|..||+.|||+|+|+.||++|||||||..+||++||||
T Consensus 1 ~~r~~~~~~~~~gf~~tg~~~dv~~h~~m~~~~~~hir~~~~l~~~e~~i~y~f~~r~~~~lal~h~s~~~~~Gt~~dh~ 80 (533)
T KOG1817|consen 1 MRRNVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQSLDHLEELIGYTFQDRCLLQLALTHPSHKLNYGTNPDHA 80 (533)
T ss_pred CCcceeEeeccchHHHhCcchHHHHHHHHHHHHhhhhhHHHhHHHHHHHhCeeecchHHHHHHhcCchHHhhCCCCchhh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCccchhcccccccccchhHHHHhhhcccccccCcCccchHHHHhhhhHhhHHHHHhhhhhCCCCCc
Q psy14776 772 RNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEE 851 (1022)
Q Consensus 772 ~nsltncg~r~pe~Gd~~ih~~~~rKrGi~tlInimsrmgkn~es~s~i~nYERLEFLGDAVLKfiVS~~LF~kyP~lsE 851 (1022)
+|++||||+|+|+||++++|++..+++||+++|+||+++|...++.+.+.+|||||||||++.+++++.++|..+|...+
T Consensus 81 kns~tncg~r~~~yg~~~~~~~~kr~~gin~li~imk~l~~~~~~~s~i~hnErle~lgdavve~~ss~hl~~~~~r~~e 160 (533)
T KOG1817|consen 81 KNSLTNCGIRQPKYGDRKEHIMTKRKLGINTLINIMKRLGVIQPTHSVIKHNERLEFLGDAVVELLSSNHLYFMFPRLEE 160 (533)
T ss_pred hccccccCcCCcccchhHHHHHHHHHhhhhHHHHHHhhccCCCCchhHhHHHHHHHHHhhccHHHHHHHHHHHccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcHHHHHHHHHHcCCcchhcccCCCccccccccchhhHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcChH
Q psy14776 852 GGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931 (1022)
Q Consensus 852 G~LT~lRsaLVSN~~LA~iAkkLGL~eyIr~~~g~~l~~~~~~~KvLADVfEALIGAIYLDsGle~A~kfL~~Ll~~~d~ 931 (1022)
|.|...|.++|.|++|+.+|+++.++.|+.+..|.+++......+++|++|||+|||+|+|+|...+..++...++..++
T Consensus 161 ggLatyrta~vqnr~la~lakklrkd~fl~yahg~dl~~~~E~Kha~an~feavi~a~~l~g~~~~~e~lfs~~~~~~ep 240 (533)
T KOG1817|consen 161 GGLATYRTAIVQNRHLAKLAKKLRKDEFLLYAHGYDLCFETELKHAMANCFEAVIGAKYLDGGLVVAEKLFSRALFVYEP 240 (533)
T ss_pred cchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHHHHhhccCc
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999988888
Q ss_pred HHhhhhcCCCCCCCcccCCCCcCcccccchhHHHHHHHHHHhCCCCCCHHHHHHhhcCCCCCCCCCCCCCchhhhhhhhh
Q psy14776 932 VRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDT 1011 (1022)
Q Consensus 932 dLl~~W~~~Pk~pLQE~~P~~dR~~i~~~p~l~~l~~lE~~LGY~Fkn~~LL~eAfTH~Sy~~~~~~~~~yQRLEFLGDA 1011 (1022)
.+.+.|...|.+++|+.+|.++|..+..+|.+..+.++|+++|..|.++++|.+|||-+|.+++..+.++|||||||||+
T Consensus 241 vlee~w~~~~ehelq~~ep~gDr~~~~~~Ppllp~~~~e~~~g~vF~Hirlla~aft~rs~~~n~Lt~gHNqRLEFLGDS 320 (533)
T KOG1817|consen 241 VLEEEWEHEPEHELQEQEPAGDRVLITKYPPLLPLTQFEEIIGIVFIHIRLLARAFTLRSIPFNHLTLGHNQRLEFLGDS 320 (533)
T ss_pred hhhccccCCCcCcccccCCCccccccccCCCCCchhhHHHHHHHHHHHHHHHHHHhhccCCCchhhhhhhhHHHHHhHHH
Confidence 89999999999999999999999999899998899999999999999999999999999999888899999999999999
Q ss_pred hhhHHHHHhcC
Q psy14776 1012 VLQLITSDYLY 1022 (1022)
Q Consensus 1012 VLdlvVseyLY 1022 (1022)
||++++++|||
T Consensus 321 ilqlv~T~ily 331 (533)
T KOG1817|consen 321 ILQLVMTEILY 331 (533)
T ss_pred HHHHHHHHHHH
Confidence 99999999997
No 2
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.97 E-value=3.1e-31 Score=280.04 Aligned_cols=145 Identities=36% Similarity=0.679 Sum_probs=133.1
Q ss_pred hHHHHHHHHHhCCCcCCHHHHHHHhhCCCcccccCCCCcccccccccCCCCCCCCCccchhcccccccccchhHHHHhhh
Q psy14776 731 HRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKL 810 (1022)
Q Consensus 731 ~~~L~~LE~~LGY~FkD~~LL~eALTHpSy~~~~G~~Pd~a~nsltncg~r~pe~Gd~~ih~~~~rKrGi~tlInimsrm 810 (1022)
...+..|++.+||.|+|+.||.+||||+||.+..+
T Consensus 5 ~~~~~~l~~~lg~~f~~~~lL~~AltH~S~~~e~~--------------------------------------------- 39 (235)
T COG0571 5 IKKLEALEKKLGYTFKDKELLEQALTHRSYANEHK--------------------------------------------- 39 (235)
T ss_pred hHHHHHHHHHhCCCcCCHHHHHHHhcCcchhcccc---------------------------------------------
Confidence 34577899999999999999999999999986411
Q ss_pred cccccccCcCccchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcchhcccCCCcccc
Q psy14776 811 GRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCH 890 (1022)
Q Consensus 811 gkn~es~s~i~nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~eyIr~~~g~~l~~ 890 (1022)
...|||||||||||||+++++.+||.+||+.+||.||.+|+.+||+..|+.+|..+||.+||+.++|+....
T Consensus 40 --------~~~~nERLEFLGDavL~l~vae~Lf~~yP~~~EG~Ls~~ra~lV~~~~La~ia~~l~l~~~l~lg~ge~~~g 111 (235)
T COG0571 40 --------AVENNERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALVSEESLAEIARELGLGDYLRLGKGEEKSG 111 (235)
T ss_pred --------CCcchHHHHhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCccchhhccCChhhcC
Confidence 125799999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred ccccchhhHHHHHHHHHHHhhcCCHHHHHHHHHHhhhc
Q psy14776 891 EVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 928 (1022)
Q Consensus 891 ~~~~~KvLADVfEALIGAIYLDsGle~A~kfL~~Ll~~ 928 (1022)
+...++++||+|||||||||+|+|++.|++|+..++.+
T Consensus 112 g~~~~silaD~~EAligAiylD~g~~~~~~~i~~l~~~ 149 (235)
T COG0571 112 GRRRESILADAFEALIGAIYLDSGLEAARKFILKLFLP 149 (235)
T ss_pred CCCchhHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999988753
No 3
>PRK12371 ribonuclease III; Reviewed
Probab=99.97 E-value=4e-31 Score=278.97 Aligned_cols=142 Identities=33% Similarity=0.489 Sum_probs=126.5
Q ss_pred hHHHHHHHHHhCCCcCCHHHHHHHhhCCCcccccCCCCcccccccccCCCCCCCCCccchhcccccccccchhHHHHhhh
Q psy14776 731 HRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKL 810 (1022)
Q Consensus 731 ~~~L~~LE~~LGY~FkD~~LL~eALTHpSy~~~~G~~Pd~a~nsltncg~r~pe~Gd~~ih~~~~rKrGi~tlInimsrm 810 (1022)
...+..||++|||+|+|+.||.+||||+||....
T Consensus 9 ~~~~~~le~~lgy~F~~~~Ll~~AlTH~S~~~~~---------------------------------------------- 42 (235)
T PRK12371 9 AATASILEERTGHRFANKERLERALTHSSARASK---------------------------------------------- 42 (235)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHcCcCcccCC----------------------------------------------
Confidence 4567789999999999999999999999986410
Q ss_pred cccccccCcCccchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcchhcccCCCcccc
Q psy14776 811 GRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCH 890 (1022)
Q Consensus 811 gkn~es~s~i~nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~eyIr~~~g~~l~~ 890 (1022)
..||||||||||+||+++++.+||.+||+++||.|+.+|+.+|+|.+|+.+|.++||++||+.+++.....
T Consensus 43 ---------~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~~eG~Lt~~rs~lV~n~~La~ia~~lgL~~~i~~~~~~~~~~ 113 (235)
T PRK12371 43 ---------QGNYERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVNAETCAAIADEIGLHDLIRTGSDVKKLT 113 (235)
T ss_pred ---------ccchHhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhChHHHHHHHHHCCcHHHhccCcchhhcC
Confidence 13699999999999999999999999999999999999999999999999999999999999876543333
Q ss_pred ccccchhhHHHHHHHHHHHhhcCCHHHHHHHHHHhhh
Q psy14776 891 EVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927 (1022)
Q Consensus 891 ~~~~~KvLADVfEALIGAIYLDsGle~A~kfL~~Ll~ 927 (1022)
+...++++||+|||||||||+|+|++.|.+|+..++.
T Consensus 114 ~~~~~~ilad~~EAliGAiylD~G~~~a~~~i~~~~~ 150 (235)
T PRK12371 114 GKRLLNVRADVVEALIAAIYLDGGLEAARPFIQRYWQ 150 (235)
T ss_pred CcccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445689999999999999999999999999998865
No 4
>PRK14718 ribonuclease III; Provisional
Probab=99.96 E-value=2.2e-30 Score=290.51 Aligned_cols=136 Identities=39% Similarity=0.627 Sum_probs=124.5
Q ss_pred HHHHHHHhCCCcCCHHHHHHHhhCCCcccccCCCCcccccccccCCCCCCCCCccchhcccccccccchhHHHHhhhccc
Q psy14776 734 LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRK 813 (1022)
Q Consensus 734 L~~LE~~LGY~FkD~~LL~eALTHpSy~~~~G~~Pd~a~nsltncg~r~pe~Gd~~ih~~~~rKrGi~tlInimsrmgkn 813 (1022)
+..||++|||+|+|+.||.+||||+||..
T Consensus 3 l~~LEkrLGY~Fkn~~LL~eALTH~Sys~--------------------------------------------------- 31 (467)
T PRK14718 3 LSQLESRLRYEFRNAELLRQALTHRSHSA--------------------------------------------------- 31 (467)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHhccCcCc---------------------------------------------------
Confidence 55789999999999999999999999842
Q ss_pred ccccCcCccchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcchhcccCCCccccccc
Q psy14776 814 VATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVE 893 (1022)
Q Consensus 814 ~es~s~i~nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~eyIr~~~g~~l~~~~~ 893 (1022)
.+|||||||||+||+++++.+||..||+++||.||.+|+.||||.+|+.+|..+||.+||+.+.+.....+..
T Consensus 32 -------e~NERLEFLGDAVL~liVse~Lf~~fPdl~EGeLT~LRS~LVSnetLA~IAr~LGL~d~Lrlg~gE~~sgG~~ 104 (467)
T PRK14718 32 -------THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFR 104 (467)
T ss_pred -------ccHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhHHHHHHHHHcCchHHHhhCCcccccCCCC
Confidence 2589999999999999999999999999999999999999999999999999999999999987755444445
Q ss_pred cchhhHHHHHHHHHHHhhcCCHHHHHHHHHHhhh
Q psy14776 894 LKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927 (1022)
Q Consensus 894 ~~KvLADVfEALIGAIYLDsGle~A~kfL~~Ll~ 927 (1022)
.+++|||+|||||||||+|+|++.+..||..++.
T Consensus 105 ~~sILADvFEALIGAIYLDsG~e~a~~fI~~ll~ 138 (467)
T PRK14718 105 RPSILADAFEAIIGAVFLDGGFEAAQGVIKRLYV 138 (467)
T ss_pred ChhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999988764
No 5
>PRK12372 ribonuclease III; Reviewed
Probab=99.96 E-value=2.5e-30 Score=288.48 Aligned_cols=136 Identities=38% Similarity=0.622 Sum_probs=124.3
Q ss_pred HHHHHHHhCCCcCCHHHHHHHhhCCCcccccCCCCcccccccccCCCCCCCCCccchhcccccccccchhHHHHhhhccc
Q psy14776 734 LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRK 813 (1022)
Q Consensus 734 L~~LE~~LGY~FkD~~LL~eALTHpSy~~~~G~~Pd~a~nsltncg~r~pe~Gd~~ih~~~~rKrGi~tlInimsrmgkn 813 (1022)
|..||++|||+|+|+.||.+||||+||..
T Consensus 3 l~~LEk~LGY~Fkn~~LL~eALTH~Sy~~--------------------------------------------------- 31 (413)
T PRK12372 3 LSQLESRLRYEFRNAELLRQALTHRSHSA--------------------------------------------------- 31 (413)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHhcccccc---------------------------------------------------
Confidence 55789999999999999999999999742
Q ss_pred ccccCcCccchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcchhcccCCCccccccc
Q psy14776 814 VATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVE 893 (1022)
Q Consensus 814 ~es~s~i~nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~eyIr~~~g~~l~~~~~ 893 (1022)
.+|||||||||+||+++++.+||..||+++||.||.+|+.||||.+|+.+|..+||.+||+.+.+.....+..
T Consensus 32 -------~~NERLEFLGDAVL~liVse~Lf~~fP~~~EG~LT~lRS~LVsn~tLA~IA~~LgL~~~Lrlg~ge~~sgg~~ 104 (413)
T PRK12372 32 -------THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFR 104 (413)
T ss_pred -------ccHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhHHHHHHHHHcCchHhhhcCcchhhcCCCC
Confidence 2589999999999999999999999999999999999999999999999999999999999987654444445
Q ss_pred cchhhHHHHHHHHHHHhhcCCHHHHHHHHHHhhh
Q psy14776 894 LKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927 (1022)
Q Consensus 894 ~~KvLADVfEALIGAIYLDsGle~A~kfL~~Ll~ 927 (1022)
.+++|||+|||||||||+|+|++.+..||..++.
T Consensus 105 ~~kILADvfEALIGAIYLDsG~e~a~~fV~~ll~ 138 (413)
T PRK12372 105 RPSILADAFEAIIGAVFLDGGFEAAQGVIKRLYV 138 (413)
T ss_pred CccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999988864
No 6
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.95 E-value=4.1e-28 Score=251.54 Aligned_cols=143 Identities=39% Similarity=0.706 Sum_probs=126.3
Q ss_pred HHHHHHHHHhCCCcCCHHHHHHHhhCCCcccccCCCCcccccccccCCCCCCCCCccchhcccccccccchhHHHHhhhc
Q psy14776 732 RSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLG 811 (1022)
Q Consensus 732 ~~L~~LE~~LGY~FkD~~LL~eALTHpSy~~~~G~~Pd~a~nsltncg~r~pe~Gd~~ih~~~~rKrGi~tlInimsrmg 811 (1022)
..+..||++|||+|+|+.||.+|||||||....+
T Consensus 3 ~~~~~l~~~lg~~f~~~~ll~~Alth~S~~~~~~---------------------------------------------- 36 (229)
T PRK00102 3 KDLEELQKKLGYTFKDPELLIQALTHRSYANENK---------------------------------------------- 36 (229)
T ss_pred hhHHHHHHHhCCCCCCHHHHHHHhCccchhccCC----------------------------------------------
Confidence 4577899999999999999999999999864200
Q ss_pred ccccccCcCccchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcchhcccCCCccccc
Q psy14776 812 RKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHE 891 (1022)
Q Consensus 812 kn~es~s~i~nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~eyIr~~~g~~l~~~ 891 (1022)
...+|||||||||+||+++++.+||..||+.++|.|+.+|+.+|||.+|+.+|.++||++||+++++......
T Consensus 37 -------~~~~nerLefLGDavl~~~v~~~l~~~~p~~~~g~l~~~~~~lvsn~~la~~a~~lgl~~~i~~~~~~~~~~~ 109 (229)
T PRK00102 37 -------GLKHNERLEFLGDAVLELVVSEYLFKRFPDLDEGDLSKLRAALVREESLAEIARELGLGEYLLLGKGEEKSGG 109 (229)
T ss_pred -------CcccchhHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHCCcHHHHccCcHHHHcCC
Confidence 1247999999999999999999999999999999999999999999999999999999999998765433233
Q ss_pred cccchhhHHHHHHHHHHHhhcCCHHHHHHHHHHhhh
Q psy14776 892 VELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927 (1022)
Q Consensus 892 ~~~~KvLADVfEALIGAIYLDsGle~A~kfL~~Ll~ 927 (1022)
...++++||+|||+|||||+|+|++.|.+|+..++.
T Consensus 110 ~~~~k~~ad~~EA~iGAiyld~g~~~~~~~i~~~~~ 145 (229)
T PRK00102 110 RRRPSILADAFEALIGAIYLDQGLEAARKFILRLFE 145 (229)
T ss_pred CCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345789999999999999999999999999998865
No 7
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.94 E-value=2.7e-27 Score=243.42 Aligned_cols=140 Identities=41% Similarity=0.736 Sum_probs=123.3
Q ss_pred HHHHhCCCcCCHHHHHHHhhCCCcccccCCCCcccccccccCCCCCCCCCccchhcccccccccchhHHHHhhhcccccc
Q psy14776 737 LEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVAT 816 (1022)
Q Consensus 737 LE~~LGY~FkD~~LL~eALTHpSy~~~~G~~Pd~a~nsltncg~r~pe~Gd~~ih~~~~rKrGi~tlInimsrmgkn~es 816 (1022)
||++|||+|+|++||.+|||||||.... .
T Consensus 1 ~e~~lgy~F~~~~ll~~Alth~S~~~~~-------------------~-------------------------------- 29 (220)
T TIGR02191 1 LEKRLGYKFKNKELLEQALTHSSYANEH-------------------H-------------------------------- 29 (220)
T ss_pred ChHHhCCCcCCHHHHHHHhcCccccccc-------------------c--------------------------------
Confidence 5889999999999999999999986420 0
Q ss_pred cCcCccchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcchhcccCCCccccccccch
Q psy14776 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKH 896 (1022)
Q Consensus 817 ~s~i~nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~eyIr~~~g~~l~~~~~~~K 896 (1022)
....+|||||||||+||+++++.++|..||+.++|.|+.+|+.+|+|.+|+.+|.++||++||++.++.....+...++
T Consensus 30 -~~~~~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~gl~~~i~~~~~~~~~~~~~~~k 108 (220)
T TIGR02191 30 -KGVKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAALVSEESLAEVARELGLGKFLLLGKGEEKSGGRRRES 108 (220)
T ss_pred -cCccchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCHHHHHHHHHHCCcHHHhccCchHhhcCCcccch
Confidence 0124799999999999999999999999999999999999999999999999999999999999876543323344589
Q ss_pred hhHHHHHHHHHHHhhcCCHHHHHHHHHHhhhc
Q psy14776 897 AMANCFEALMGALFLDGGIDVADQVFSSVLYK 928 (1022)
Q Consensus 897 vLADVfEALIGAIYLDsGle~A~kfL~~Ll~~ 928 (1022)
++||+|||+|||||+|+|++.|.+|+..++.+
T Consensus 109 ~~ad~~eAliGAiyld~g~~~~~~~i~~~~~~ 140 (220)
T TIGR02191 109 ILADAFEALIGAIYLDSGLEAARKFILKLLIP 140 (220)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998753
No 8
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=99.94 E-value=3.5e-27 Score=227.12 Aligned_cols=107 Identities=36% Similarity=0.666 Sum_probs=90.1
Q ss_pred ccchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcchhcccCCCccccccccchhhHH
Q psy14776 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMAN 900 (1022)
Q Consensus 821 ~nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~eyIr~~~g~~l~~~~~~~KvLAD 900 (1022)
.+|||||||||+||+++++.++|..+|. ++|.++..|+.+|++.+|+.+|+.+||+++|++.++..........+++||
T Consensus 20 ~~nerLefLGd~vL~~~vs~~l~~~~~~-~~g~l~~~~~~lv~~~~La~~a~~lgL~~~i~~~~~~~~~~~~~~~~vlad 98 (128)
T PF14622_consen 20 PNNERLEFLGDAVLGLVVSEYLFQRPPA-DEGELTRLRSNLVSNETLAEIAKQLGLDKLIRWGPGEEKSGGSGSDKVLAD 98 (128)
T ss_dssp B-SHHHHHHHHHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHSHHHHHHHHHHTTCGGC-B--HHHHHTTGGG-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhCcCc-cchHHHHHHHHHhChHHHHHHHHHCCHHHHHHhCccHhhcCCCCCccHHHh
Confidence 4699999999999999999999999554 899999999999999999999999999999999654333344566889999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhhhc
Q psy14776 901 CFEALMGALFLDGGIDVADQVFSSVLYK 928 (1022)
Q Consensus 901 VfEALIGAIYLDsGle~A~kfL~~Ll~~ 928 (1022)
+|||||||||+|+|++.|.+||.+.+++
T Consensus 99 ~feAliGAiyld~G~~~a~~~i~~~i~~ 126 (128)
T PF14622_consen 99 VFEALIGAIYLDSGFEAARKFIQKLILP 126 (128)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHhcc
Confidence 9999999999999999999999998763
No 9
>smart00535 RIBOc Ribonuclease III family.
Probab=99.91 E-value=2.1e-24 Score=204.51 Aligned_cols=106 Identities=42% Similarity=0.766 Sum_probs=96.7
Q ss_pred cchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcchhcccCCCccccccccchhhHHH
Q psy14776 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 901 (1022)
Q Consensus 822 nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~eyIr~~~g~~l~~~~~~~KvLADV 901 (1022)
+|||||||||+||+++++.++|.+||+.++|.|+.+++.+|+|++|+.+|.++||++++++.+..........+|++||+
T Consensus 18 ~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i~~~~~~~~~~~~~~~k~~a~~ 97 (129)
T smart00535 18 HNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFIRLGRGEAISGGRDKPSILADV 97 (129)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHHccCchHhhcCCcccchHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999987653322223568999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhhh
Q psy14776 902 FEALMGALFLDGGIDVADQVFSSVLY 927 (1022)
Q Consensus 902 fEALIGAIYLDsGle~A~kfL~~Ll~ 927 (1022)
|||+|||+|+|+|++.|.+|+..++.
T Consensus 98 ~eAliGAi~ld~g~~~~~~~i~~~~~ 123 (129)
T smart00535 98 FEALIGAIYLDSGLEAAREFIRDLLG 123 (129)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999988875
No 10
>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=99.90 E-value=7.4e-24 Score=200.69 Aligned_cols=107 Identities=41% Similarity=0.714 Sum_probs=97.3
Q ss_pred ccchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcchhcccCCCccccccccchhhHH
Q psy14776 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMAN 900 (1022)
Q Consensus 821 ~nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~eyIr~~~g~~l~~~~~~~KvLAD 900 (1022)
.+|||||||||+||+++++.++|..+|+.++|.++.+++.+|+|++|+.+|.++||+++|++.+..........+|++||
T Consensus 19 ~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i~~~~~~~~~~~~~~~k~~ad 98 (133)
T cd00593 19 FNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYLRLGKGEEKSGGRLRPKILAD 98 (133)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHhccCchHhhcCCcccccHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999998765332223456899999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhhh
Q psy14776 901 CFEALMGALFLDGGIDVADQVFSSVLY 927 (1022)
Q Consensus 901 VfEALIGAIYLDsGle~A~kfL~~Ll~ 927 (1022)
+|||||||||+|+|.+.|.+|+.+++.
T Consensus 99 ~~eAliGAiyld~g~~~~~~~i~~~~~ 125 (133)
T cd00593 99 VFEALIGAIYLDGGFEAARKFLLRLLG 125 (133)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999999998754
No 11
>KOG1817|consensus
Probab=99.84 E-value=3.1e-21 Score=214.28 Aligned_cols=142 Identities=30% Similarity=0.519 Sum_probs=122.2
Q ss_pred HHHHHHHhCCCcCCHHHHHHHhhCCCcccccCCCCcccccccccCCCCCCCCCccchhcccccccccchhHHHHhhhccc
Q psy14776 734 LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRK 813 (1022)
Q Consensus 734 L~~LE~~LGY~FkD~~LL~eALTHpSy~~~~G~~Pd~a~nsltncg~r~pe~Gd~~ih~~~~rKrGi~tlInimsrmgkn 813 (1022)
+..+|+++|..|....+|..|+|-.|...+ .|+
T Consensus 275 ~~~~e~~~g~vF~Hirlla~aft~rs~~~n--------------------------------------~Lt--------- 307 (533)
T KOG1817|consen 275 LTQFEEIIGIVFIHIRLLARAFTLRSIPFN--------------------------------------HLT--------- 307 (533)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhccCCCch--------------------------------------hhh---------
Confidence 567889999999999999999988764321 111
Q ss_pred ccccCcCccchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcchhcccCCCccccccc
Q psy14776 814 VATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVE 893 (1022)
Q Consensus 814 ~es~s~i~nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~eyIr~~~g~~l~~~~~ 893 (1022)
..+|||||||||+||.+++|.+||.+||+.+||.|+.+|+.+|+|+.-+++|..+|+++|+..+..... ....
T Consensus 308 ------~gHNqRLEFLGDSilqlv~T~ily~kFPdhhEGhLSlLRssLVsNetqakva~~lgf~e~li~n~~~k~-~~~l 380 (533)
T KOG1817|consen 308 ------LGHNQRLEFLGDSILQLVMTEILYRKFPDHHEGHLSLLRSSLVSNETQAKVADDLGFHEYLITNFDLKD-FQNL 380 (533)
T ss_pred ------hhhhHHHHHhHHHHHHHHHHHHHHHhCCccccchHHHHHHHHhccHHHHHHHHHhCCchhhhhCcchhh-hhhh
Confidence 147999999999999999999999999999999999999999999999999999999999998753211 1223
Q ss_pred cchhhHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q psy14776 894 LKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 929 (1022)
Q Consensus 894 ~~KvLADVfEALIGAIYLDsGle~A~kfL~~Ll~~~ 929 (1022)
..|.+||+|||+|||+|+|.|++.|.+|+..++++.
T Consensus 381 k~K~~ADlfEAfiGaLyvD~~le~~~qf~~~l~~Pr 416 (533)
T KOG1817|consen 381 KLKDYADLFEAFIGALYVDKGLEYCRQFLRVLFFPR 416 (533)
T ss_pred hHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHH
Confidence 478999999999999999999999999999988753
No 12
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3.1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A ....
Probab=99.83 E-value=8.6e-21 Score=176.99 Aligned_cols=91 Identities=43% Similarity=0.726 Sum_probs=79.5
Q ss_pred hHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcchhcccCCC----------c------
Q psy14776 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGS----------D------ 887 (1022)
Q Consensus 824 ERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~eyIr~~~g~----------~------ 887 (1022)
||||||||+||+++++.+||.+||+.++|.|+.+|+.+|+|.+|+.+|.++||++||+..+.. .
T Consensus 1 ErLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (114)
T PF00636_consen 1 ERLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNEDLNNGDS 80 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHCC------
T ss_pred CcHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHHHHHhccc
Confidence 799999999999999999999999999999999999999999999999999999999852100 0
Q ss_pred -c------ccccccchhhHHHHHHHHHHHhhcCC
Q psy14776 888 -L------CHEVELKHAMANCFEALMGALFLDGG 914 (1022)
Q Consensus 888 -l------~~~~~~~KvLADVfEALIGAIYLDsG 914 (1022)
. ......+|++||+|||||||+|+|+|
T Consensus 81 ~~~~~~~~~~~~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 81 ESSISYDPKNQVLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp -C-SSS--SSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCccccCCccHHHHHHHHHHHHHHHHhcC
Confidence 0 01123579999999999999999998
No 13
>KOG0701|consensus
Probab=99.79 E-value=1.7e-19 Score=225.76 Aligned_cols=222 Identities=31% Similarity=0.444 Sum_probs=167.8
Q ss_pred hHHHHHHHHHhC--CCcCCH--------HHHHHHhhCCCcccccCCCCcccccccccCCCCCCCCCccchhccccccccc
Q psy14776 731 HRSLNVLEDRIQ--YKFQNR--------YLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGI 800 (1022)
Q Consensus 731 ~~~L~~LE~~LG--Y~FkD~--------~LL~eALTHpSy~~~~G~~Pd~a~nsltncg~r~pe~Gd~~ih~~~~rKrGi 800 (1022)
....+.+|..+. |.|.+. .+|++|||++++...
T Consensus 978 ~~~~E~~e~i~n~~~~Fs~~~~~i~~~~s~LLEAlT~~~~~~s------------------------------------- 1020 (1606)
T KOG0701|consen 978 RSDWEAVEKILNFRYVFSISLASIALSTSLLLEALTTSSCQDS------------------------------------- 1020 (1606)
T ss_pred cccccccccccccceeccccccccccchhHHHHHhhcCccccc-------------------------------------
Confidence 445677888888 999999 999999999887531
Q ss_pred chhHHHHhhhcccccccCcCccchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcchh
Q psy14776 801 NTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880 (1022)
Q Consensus 801 ~tlInimsrmgkn~es~s~i~nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~eyI 880 (1022)
.++||||+|||++|+++++.+||..||+..||+|+.+|+.+++|.+|+.+|+..||+.|+
T Consensus 1021 --------------------~s~Erle~Lgds~Lk~avsr~l~L~ypd~~Egqls~lr~~~~~~~nl~~la~~~gl~~~~ 1080 (1606)
T KOG0701|consen 1021 --------------------FSLERLELLGDSLLKLAVSRHLFLTYPDLDEGQLSRLRDVNVSNDNLARLAVKKGLYSYL 1080 (1606)
T ss_pred --------------------hhHHHHHhhHHHHHHHHHHHHHHHhCCcccchhHHHHHHhcccccchhhhhhcccchhhc
Confidence 468999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc---C------CC-----------------------c----------------cc-----cccccchhhHHHHHHHHH
Q psy14776 881 LYA---H------GS-----------------------D----------------LC-----HEVELKHAMANCFEALMG 907 (1022)
Q Consensus 881 r~~---~------g~-----------------------~----------------l~-----~~~~~~KvLADVfEALIG 907 (1022)
+.. + +. + .. .....+|.+||++|||+|
T Consensus 1081 ~~~~fep~~~~~p~~~~~~~~~~k~~~~~~~~~~~~e~~e~~~df~e~~~~~~~~~~~~~~~~~~~~~ks~adl~eaLlg 1160 (1606)
T KOG0701|consen 1081 RHEGFEPSRWWVPGQLDVNNVDCKDLSGDQNYILYKELDEKIKDFQEAMEKEDGDSRSKGGDHDWLAPKSPADLLEALLG 1160 (1606)
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhhHHHHhhhccCCcccccccccceecCCCHHHHHHHHHH
Confidence 854 0 00 0 00 012347899999999999
Q ss_pred HHhhcCCHHHHH-----HHHHHhhhcChHHHhhhhcCCCCCCCcccCCCCcCcccccchhHHHHHHHHHHhCC--CCCCH
Q psy14776 908 ALFLDGGIDVAD-----QVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGV--IFNHI 980 (1022)
Q Consensus 908 AIYLDsGle~A~-----kfL~~Ll~~~d~dLl~~W~~~Pk~pLQE~~P~~dR~~i~~~p~l~~l~~lE~~LGY--~Fkn~ 980 (1022)
|+|+|+|+..+. .++.+.+.. ....|.. +++...... .+. .......+.+++..+|| +|...
T Consensus 1161 a~~vD~~~~~~~~~~~~~~lk~~~~~----~dy~~~e-~~~~~~~~~---~~s---~~~~~~~~~~ler~l~~~~~~~~~ 1229 (1606)
T KOG0701|consen 1161 AIYVDGGLLETFETIGDSFLKWSITN----YDYDTLE-PKHAGKLSF---RRS---KIVKKKNLDRLERELGLKFKFLEA 1229 (1606)
T ss_pred hhhhhccchhhhhHHHHHHHhhhhhh----hhhhccc-ccchhhhhh---hhh---hHhhhhhHHHHHHhhcccchhhhh
Confidence 999999988777 444433321 1111111 111110000 000 01123457889999999 99999
Q ss_pred HHHHHhhcCCCCCCCCCCCCCchhhhhhhhhhhhHHHHHhcC
Q psy14776 981 RLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022 (1022)
Q Consensus 981 ~LL~eAfTH~Sy~~~~~~~~~yQRLEFLGDAVLdlvVseyLY 1022 (1022)
.|+.+||+|+|+... ...++|||+|+||+|||.++..+.|
T Consensus 1230 ~l~~~~~~~~s~~~~--~ld~~erl~~~~d~vld~l~~~~~~ 1269 (1606)
T KOG0701|consen 1230 ALLVQAFIHCSLRAE--GLDATERLEFLGDAVLDKLSDKHPF 1269 (1606)
T ss_pred hcchhhccccccccc--ccchHHHHHhhHHHHHHHHHHhhhH
Confidence 999999999997655 3456999999999999988877654
No 14
>KOG0701|consensus
Probab=99.56 E-value=2.6e-15 Score=188.84 Aligned_cols=216 Identities=30% Similarity=0.381 Sum_probs=168.2
Q ss_pred hhhhHHHHHHHHHhCC--CcCCHHHHHHHhhCCCcccccCCCCcccccccccCCCCCCCCCccchhcccccccccchhHH
Q psy14776 728 LRFHRSLNVLEDRIQY--KFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLIN 805 (1022)
Q Consensus 728 ir~~~~L~~LE~~LGY--~FkD~~LL~eALTHpSy~~~~G~~Pd~a~nsltncg~r~pe~Gd~~ih~~~~rKrGi~tlIn 805 (1022)
+.....+..||..++| +|....|+.+|++|+|+... |+
T Consensus 1207 ~~~~~~~~~ler~l~~~~~~~~~~l~~~~~~~~s~~~~-----------------------------------~l----- 1246 (1606)
T KOG0701|consen 1207 IVKKKNLDRLERELGLKFKFLEAALLVQAFIHCSLRAE-----------------------------------GL----- 1246 (1606)
T ss_pred HhhhhhHHHHHHhhcccchhhhhhcchhhccccccccc-----------------------------------cc-----
Confidence 3357778999999999 99999999999999997642 11
Q ss_pred HHhhhcccccccCcCccchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhc--HHHHHHHHHHcCCcchhccc
Q psy14776 806 IMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQ--NQHLAHLAKRIGLEDFMLYA 883 (1022)
Q Consensus 806 imsrmgkn~es~s~i~nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVS--N~~LA~iAkkLGL~eyIr~~ 883 (1022)
..+|||+|+||++|+++++.+.|..+.....|.++..+.+-++ |.+++..++.-.|+-+++..
T Consensus 1247 ---------------d~~erl~~~~d~vld~l~~~~~~~~~~~~~~~~lt~~~~~~v~~l~e~~~~~~v~~~l~~~l~~~ 1311 (1606)
T KOG0701|consen 1247 ---------------DATERLEFLGDAVLDKLSDKHPFEVFIRLDGGELTDLREAGVNTLNENDLNVKVPKSLPYNLLDQ 1311 (1606)
T ss_pred ---------------chHHHHHhhHHHHHHHHHHhhhHhhhhcccCcchhhhhhhhhhhhhhcccccccCCcceeeehhh
Confidence 2379999999999999999999999999999999999999999 88888888877777776654
Q ss_pred CCCccccccccchhhHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcChHHHhhhhcCCCCCCCcccCCCCcCcccccchhH
Q psy14776 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLL 963 (1022)
Q Consensus 884 ~g~~l~~~~~~~KvLADVfEALIGAIYLDsGle~A~kfL~~Ll~~~d~dLl~~W~~~Pk~pLQE~~P~~dR~~i~~~p~l 963 (1022)
.. ...|.++|.+|++||+....+|...+.-++.+... ...+.+... ....+.....+
T Consensus 1312 s~-------~~~K~i~d~v~sli~~~~~~~~~~s~l~~~~~~~~--------------l~~i~es~~--~~~~~~~~~~l 1368 (1606)
T KOG0701|consen 1312 SS-------VLEKSIADSVEALIGASLSEGGPSSALLFMDWPPI--------------LLDIPESIA--SPDSIDELRQL 1368 (1606)
T ss_pred cc-------CccchHHHHHHHhhhhhhhccCCCccccccccccc--------------ccccccccc--ccchhHHHHHH
Confidence 32 34789999999999999998887665554422110 111111100 01111111122
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHhhcCCCCCCCCCCCCCchhhhhhhhhhhhHHHHHhcC
Q psy14776 964 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022 (1022)
Q Consensus 964 ~~l~~lE~~LGY~Fkn~~LL~eAfTH~Sy~~~~~~~~~yQRLEFLGDAVLdlvVseyLY 1022 (1022)
..+..+++.+||.|....++.+|+||.||..+. ...||||||||||+|+++.|++++|
T Consensus 1369 ~~~~~~e~~l~y~f~~~~~l~~a~th~s~~~~~-~~~C~qrleflgd~vld~~it~hl~ 1426 (1606)
T KOG0701|consen 1369 LSFGKFEEKLNYRFKLKPYLTQATTHASYIYNR-ITDCYQRLEFLGDAVLDYLITKHLY 1426 (1606)
T ss_pred HHHHhhhcccchhhhhhhcccccccccccccCc-cchhhhhHHHhHHhhhhhhhhhccc
Confidence 347888999999999999999999999998775 5579999999999999999999987
No 15
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.46 E-value=4.6e-14 Score=150.22 Aligned_cols=59 Identities=41% Similarity=0.673 Sum_probs=55.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHhhcCCCCCCCCCCCCCchhhhhhhhhhhhHHHHHhcC
Q psy14776 964 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022 (1022)
Q Consensus 964 ~~l~~lE~~LGY~Fkn~~LL~eAfTH~Sy~~~~~~~~~yQRLEFLGDAVLdlvVseyLY 1022 (1022)
..+..|++.+||.|+|+.||.+||||+||.+++....+||||||||||||+++|++|||
T Consensus 6 ~~~~~l~~~lg~~f~~~~lL~~AltH~S~~~e~~~~~~nERLEFLGDavL~l~vae~Lf 64 (235)
T COG0571 6 KKLEALEKKLGYTFKDKELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLF 64 (235)
T ss_pred HHHHHHHHHhCCCcCCHHHHHHHhcCcchhccccCCcchHHHHhhHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999988656789999999999999999999997
No 16
>PRK12371 ribonuclease III; Reviewed
Probab=99.39 E-value=2.4e-13 Score=144.54 Aligned_cols=57 Identities=35% Similarity=0.501 Sum_probs=51.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHhhcCCCCCCCCCCCCCchhhhhhhhhhhhHHHHHhcC
Q psy14776 964 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022 (1022)
Q Consensus 964 ~~l~~lE~~LGY~Fkn~~LL~eAfTH~Sy~~~~~~~~~yQRLEFLGDAVLdlvVseyLY 1022 (1022)
..+..||++|||+|+|+.||.+||||+||... ...+||||||||||||+++|++|||
T Consensus 10 ~~~~~le~~lgy~F~~~~Ll~~AlTH~S~~~~--~~~~~eRLEFLGDavL~l~vs~~Lf 66 (235)
T PRK12371 10 ATASILEERTGHRFANKERLERALTHSSARAS--KQGNYERLEFLGDRVLGLCVAEMLF 66 (235)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHcCcCcccC--CccchHhHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999998764 2358999999999999999999997
No 17
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.31 E-value=1.5e-12 Score=135.83 Aligned_cols=59 Identities=44% Similarity=0.680 Sum_probs=53.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHhhcCCCCCCCCCCCCCchhhhhhhhhhhhHHHHHhcC
Q psy14776 964 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022 (1022)
Q Consensus 964 ~~l~~lE~~LGY~Fkn~~LL~eAfTH~Sy~~~~~~~~~yQRLEFLGDAVLdlvVseyLY 1022 (1022)
..+..||++|||+|+|+.||.+||||+||........+||||||||||||+++|++|||
T Consensus 3 ~~~~~l~~~lg~~f~~~~ll~~Alth~S~~~~~~~~~~nerLefLGDavl~~~v~~~l~ 61 (229)
T PRK00102 3 KDLEELQKKLGYTFKDPELLIQALTHRSYANENKGLKHNERLEFLGDAVLELVVSEYLF 61 (229)
T ss_pred hhHHHHHHHhCCCCCCHHHHHHHhCccchhccCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999764445678999999999999999999986
No 18
>KOG3769|consensus
Probab=98.74 E-value=1.1e-07 Score=104.06 Aligned_cols=200 Identities=21% Similarity=0.301 Sum_probs=139.8
Q ss_pred hhhhHHHHHHHHHhCCCcCCHHHHHHHhhCCCcccccCCCCcccccccccCCCCCCCCCccchhcccccccccchhHHHH
Q psy14776 728 LRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIM 807 (1022)
Q Consensus 728 ir~~~~L~~LE~~LGY~FkD~~LL~eALTHpSy~~~~G~~Pd~a~nsltncg~r~pe~Gd~~ih~~~~rKrGi~tlInim 807 (1022)
..++..|.+|.++||..=-..+.|..|||-+||... +.+ +.+--|++.+.
T Consensus 59 W~~~sel~afg~RL~~~~is~~~l~ka~t~~s~~~~-----~kv---------~~~~lg~~~~~---------------- 108 (333)
T KOG3769|consen 59 WDYNSELSAFGKRLQSEEISLSYLLKALTNLSFSYP-----EKV---------LRQQLGAETVA---------------- 108 (333)
T ss_pred cchhHHHHHHHHHhccccccHHHHHHHHhCccccch-----HHH---------hhhhhcchhhh----------------
Confidence 446788999999999533367899999999999753 221 11111221111
Q ss_pred hhhcccccccCcCccchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcchhcccCCCc
Q psy14776 808 SKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSD 887 (1022)
Q Consensus 808 srmgkn~es~s~i~nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~eyIr~~~g~~ 887 (1022)
...+..+|+-|--.|..++.+.++.+|-.+||.+++..++.+-+.+++.+.||.+|..+|++++++....+.
T Consensus 109 --------~~~~~~~N~~L~~~Gk~~~~~~v~~~l~~kyPrlP~E~l~ai~n~ll~ee~LahiAt~lGie~l~~seeFp~ 180 (333)
T KOG3769|consen 109 --------QVNPQYSNEELVEIGKQFLSFYVTEYLKCKYPRLPEEGLHAIVNGLLGEEVLAHIATHLGIEELGLSEEFPK 180 (333)
T ss_pred --------hhcCCcchHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHhhhHHHHHHHHHHhhHHHHhhcccCCC
Confidence 012346899999999999999999999999999999999999999999999999999999999998754321
Q ss_pred cccccccchhhHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcChHHHhhhhcCCCCCCCcccCCCCcCcccccchhHHHHH
Q psy14776 888 LCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQ 967 (1022)
Q Consensus 888 l~~~~~~~KvLADVfEALIGAIYLDsGle~A~kfL~~Ll~~~d~dLl~~W~~~Pk~pLQE~~P~~dR~~i~~~p~l~~l~ 967 (1022)
. ......+...+++-||+|+++...|+..+++|+..-+...+.+..++|.- +.| ...+.
T Consensus 181 ~-~eisq~ess~~aI~Al~~~~~~ek~~~~v~dFI~~qi~~k~L~~~~m~ql--------~~P------------~~~L~ 239 (333)
T KOG3769|consen 181 V-GEISQDESSRRAIGALLGSVGLEKGFNFVRDFINDQILSKDLDPREMWQL--------QWP------------RRLLS 239 (333)
T ss_pred c-hhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchHhhccc--------cch------------HHHHH
Confidence 1 11122356778888888888888887777777766665433333466631 111 12345
Q ss_pred HHHHHhCCCCCCHHHHHHh
Q psy14776 968 YLEYSSGVIFNHIRLLARV 986 (1022)
Q Consensus 968 ~lE~~LGY~Fkn~~LL~eA 986 (1022)
.+-+..|.+=--.+|+.++
T Consensus 240 ~lckr~~l~epe~Rll~es 258 (333)
T KOG3769|consen 240 RLCKRRGLKEPESRLLAES 258 (333)
T ss_pred HHHHHcCCCCchhHHHHHh
Confidence 5555666666666666664
No 19
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair]
Probab=96.82 E-value=0.0059 Score=60.82 Aligned_cols=100 Identities=24% Similarity=0.306 Sum_probs=68.2
Q ss_pred hHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcchhc------ccCCCcc--cccc---
Q psy14776 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML------YAHGSDL--CHEV--- 892 (1022)
Q Consensus 824 ERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~eyIr------~~~g~~l--~~~~--- 892 (1022)
=-|+|+||||+++++-.|+...+- ..++.|+..-.+.||-..=|.+-..+ .+++. ...|-.. ...+
T Consensus 16 laLAy~GDAV~e~yVR~~~l~~g~-~k~~~lH~~a~~~VsAk~QA~il~~~--~~~Lte~E~~I~KRgRNaks~T~~kn~ 92 (132)
T COG1939 16 LALAYLGDAVYELYVREYLLLKGK-TKPNDLHKRATAYVSAKAQALILKAL--LEFLTEEEEEIVKRGRNAKSGTKPKNT 92 (132)
T ss_pred HHHHHhhhHHHHHHHHHHHHhccc-CChHHHHHHHHHHhhHHHHHHHHHHH--HHHhhHHHHHHHHHhcccccCCCCCCC
Confidence 459999999999999888776533 26899999999999988766654332 11221 1111110 0001
Q ss_pred -ccchhhHHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q psy14776 893 -ELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926 (1022)
Q Consensus 893 -~~~KvLADVfEALIGAIYLDsGle~A~kfL~~Ll 926 (1022)
...-..|..||||||.+||..-.+....++.+.+
T Consensus 93 dv~tYr~sTgfEAliGyLyL~~~~eRL~ell~~~i 127 (132)
T COG1939 93 DVETYRMSTGFEALIGYLYLTKQEERLEELLNKVI 127 (132)
T ss_pred ChHHHHHhhhHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1122468999999999999999988888877654
No 20
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=81.10 E-value=7.6 Score=38.23 Aligned_cols=81 Identities=28% Similarity=0.369 Sum_probs=57.1
Q ss_pred HHHhhhhHhhHHHHHhh--hhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcchhcccCCCccccccccchhhHHHHH
Q psy14776 826 LEFLGDAVVEFITSIHL--FHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFE 903 (1022)
Q Consensus 826 LEFLGDAVLKfiVS~~L--F~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~eyIr~~~g~~l~~~~~~~KvLADVfE 903 (1022)
|.-+||+++.|+.|..| |.-+|.- .-|-|..|+..-...||...+.- . .-.+.-+|+.|
T Consensus 3 Lak~GDSLvNfl~SlALse~lG~Ptg----------~rVPnaSLaiAl~~a~L~~~~~P--R-------~dkh~kGd~aE 63 (120)
T PF11469_consen 3 LAKFGDSLVNFLFSLALSEYLGRPTG----------DRVPNASLAIALELAGLSHLLPP--R-------TDKHGKGDIAE 63 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS-----------------HHHHHHHHHHTTGGGCS----C-------GGCCGHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHhCCCCC----------CCCCChHHHHHHHHHhhhhhCcc--c-------ccccCccHHHH
Confidence 78899999999999887 4555643 34788889888888888877751 1 12456799999
Q ss_pred HHHHHHhhcCC--HHHHHHHHHHh
Q psy14776 904 ALMGALFLDGG--IDVADQVFSSV 925 (1022)
Q Consensus 904 ALIGAIYLDsG--le~A~kfL~~L 925 (1022)
|+|+-.++.+- .+.|..++..-
T Consensus 64 A~iAyAWLeg~it~eEaveil~~n 87 (120)
T PF11469_consen 64 ALIAYAWLEGKITIEEAVEILKAN 87 (120)
T ss_dssp HHHHHHHHTTSS-HHHHHHHHHCT
T ss_pred HHHHHHHHhccccHHHHHHHHHhc
Confidence 99999999986 46777766543
No 21
>KOG4368|consensus
Probab=65.47 E-value=4.3 Score=49.32 Aligned_cols=9 Identities=33% Similarity=0.475 Sum_probs=6.1
Q ss_pred hccceeeec
Q psy14776 262 EKKIWTRSA 270 (1022)
Q Consensus 262 ~~~~W~Rss 270 (1022)
.|-.|.++-
T Consensus 695 ~KMGWsG~G 703 (757)
T KOG4368|consen 695 VKMGWSGSG 703 (757)
T ss_pred hhcCcccCC
Confidence 345788876
No 22
>KOG4368|consensus
Probab=54.60 E-value=7.5 Score=47.40 Aligned_cols=13 Identities=8% Similarity=-0.220 Sum_probs=6.5
Q ss_pred cccccCCCCcccc
Q psy14776 124 QLHLKHPLAGQTN 136 (1022)
Q Consensus 124 ~~~~~~~~~~~~~ 136 (1022)
..-++-||.--.|
T Consensus 576 egwe~~gLye~~r 588 (757)
T KOG4368|consen 576 EGWEQNGLYEFFR 588 (757)
T ss_pred chhhhcccHHHHH
Confidence 3455666654433
No 23
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=50.16 E-value=5.1 Score=39.33 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=13.1
Q ss_pred CHHHHHHhhcCCCCCC
Q psy14776 979 HIRLLARVFTTRSMGY 994 (1022)
Q Consensus 979 n~~LL~eAfTH~Sy~~ 994 (1022)
|+.||.+||||+||.+
T Consensus 1 ~~~Ll~~alTH~S~~~ 16 (128)
T PF14622_consen 1 DDELLLQALTHKSYAH 16 (128)
T ss_dssp SHHHHHHHTB-HHHHH
T ss_pred CHHHHHHHhcCccccc
Confidence 5789999999999964
No 24
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=38.73 E-value=26 Score=38.89 Aligned_cols=17 Identities=12% Similarity=0.331 Sum_probs=8.7
Q ss_pred ccchHHHhHHHHHHHHh
Q psy14776 359 EEDAEEDNWMMELQLKQ 375 (1022)
Q Consensus 359 d~~~~~~~~~~e~~~k~ 375 (1022)
|+++|....|+||++.+
T Consensus 143 ddeDd~~~Ll~ELekIK 159 (244)
T PF04889_consen 143 DDEDDTAALLRELEKIK 159 (244)
T ss_pred ccchHHHHHHHHHHHHH
Confidence 34444455566665543
No 25
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=29.27 E-value=51 Score=26.87 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=16.3
Q ss_pred CCCeEEEeCCeEEEEeeee
Q psy14776 450 NKPTVIEHDNQEFIFEGFS 468 (1022)
Q Consensus 450 ~~~T~i~~~~~~y~FeGFs 468 (1022)
..+-+|-|+|++++|+++.
T Consensus 5 ~~qLTIfY~G~V~Vfd~v~ 23 (36)
T PF06200_consen 5 TAQLTIFYGGQVCVFDDVP 23 (36)
T ss_pred CCcEEEEECCEEEEeCCCC
Confidence 3467899999999999975
No 26
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=27.56 E-value=84 Score=26.12 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCcccCHHhhhhhhccChhHHHhhhhccce
Q psy14776 560 YRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKG 599 (1022)
Q Consensus 560 ~~VL~yll~~~~~l~~~~~l~~~~~~~~~~w~~~~~~~k~ 599 (1022)
.+||.+|+.+..+ ++.++|+..+..|...=.++++.++.
T Consensus 3 ~~il~~L~~~~~~-it~~eLa~~l~vS~rTi~~~i~~L~~ 41 (55)
T PF08279_consen 3 KQILKLLLESKEP-ITAKELAEELGVSRRTIRRDIKELRE 41 (55)
T ss_dssp HHHHHHHHHTTTS-BEHHHHHHHCTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-cCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5789999999888 89999999999998888888777654
No 27
>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.03 E-value=51 Score=37.28 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=33.2
Q ss_pred HHhHHHHHHHHhcCCCCCCCccccCCCCCCCCCCCcccCcc
Q psy14776 364 EDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSK 404 (1022)
Q Consensus 364 ~~~~~~e~~~k~~hp~rlh~~lw~Ne~g~~Ndgp~CrC~~~ 404 (1022)
.+-+.+.++.-.--|..||-|||+-.-.-.-|||.|-=|+-
T Consensus 173 ~~~v~elL~~hqpqPsLlHGDLW~gN~a~~~~GPv~fDPA~ 213 (286)
T COG3001 173 VEKIQELLADHQPQPSLLHGDLWSGNCAFGKDGPVIFDPAC 213 (286)
T ss_pred HHHHHHHHhcCCCCcceeecccccccccccCCCCeeecccc
Confidence 34456667776777999999999999999999999975554
No 28
>PF11430 EGL-1: Programmed cell death activator EGL-1; InterPro: IPR021543 Initiation of programmed cell death in C.elegans occurs by the binding of EGL-1 to CED-9 which disrupts a complex involving CED-4/CED-9 and allows CED-4 to activate CED-3, a caspase. It is the C-terminal domain of EGL-1 which is involved in the formation of the complex with CED-9. The formation of the complex induces structural rearrangements in CED-9 and EGL-1 adopts an extended alpha-helical conformation []. ; PDB: 1TY4_D.
Probab=24.74 E-value=75 Score=23.29 Aligned_cols=14 Identities=29% Similarity=0.826 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHH
Q psy14776 289 QKTRTICDEFESVI 302 (1022)
Q Consensus 289 ~kL~~L~~rFe~el 302 (1022)
.||-.+||.|+.|+
T Consensus 5 ~kla~MCDdFD~em 18 (21)
T PF11430_consen 5 TKLAAMCDDFDAEM 18 (21)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 58999999999997
No 29
>PF05117 DUF695: Family of unknown function (DUF695) ; InterPro: IPR016097 This entry is found at the N terminus of a number of proteobacterial proteins of unknown function.
Probab=23.46 E-value=1.2e+02 Score=29.96 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=30.6
Q ss_pred hHHHhhhhccceEEEeCCCCCccceeccccccccCCCccccceeeeccC
Q psy14776 588 YEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDIYPDAVHFGSR 636 (1022)
Q Consensus 588 ~~w~~~~~~~k~~ivt~p~~kP~a~RvDqldr~~~~~~~~p~ivH~g~r 636 (1022)
..|+-|.. +.+.||+++||+-=-.+......||.+|++.+.
T Consensus 3 ~~W~~y~~--------~i~~~pa~~~~N~~l~~~~~~~~~~~~v~i~i~ 43 (136)
T PF05117_consen 3 QNWQVYRA--------RIEDKPAIIRVNLGLIEFAPKASYPWRVQISIK 43 (136)
T ss_pred cchhhhhe--------eeCCeeEEEEEecchhhhCcccCCCEEEEEEEE
Confidence 37887754 457899999998644444556789999998885
No 30
>PRK02287 hypothetical protein; Provisional
Probab=21.99 E-value=83 Score=33.54 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHhhhc
Q psy14776 899 ANCFEALMGALFLDGGIDVADQVFSSVLYK 928 (1022)
Q Consensus 899 ADVfEALIGAIYLDsGle~A~kfL~~Ll~~ 928 (1022)
=.++||+.+|+|+-+..+.|.+++..+-++
T Consensus 107 Ls~vEAlAaaLyI~G~~~~A~~ll~~F~WG 136 (171)
T PRK02287 107 LSSVEALAAALYILGFKEEAEKILSKFKWG 136 (171)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhhCCCh
Confidence 368999999999999999999999888664
Done!