Query psy14776
Match_columns 1022
No_of_seqs 370 out of 2325
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 20:20:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14776.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14776hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qvw_A GLP_546_48378_50642; di 100.0 2E-42 6.7E-47 411.7 14.0 389 452-927 10-434 (756)
2 3o2r_A Ribonuclease III; struc 100.0 3.2E-31 1.1E-35 266.1 12.9 139 732-927 26-164 (170)
3 3n3w_A Ribonuclease III; nucle 100.0 1.1E-30 3.9E-35 275.1 11.7 162 733-951 27-189 (248)
4 3c4b_A Endoribonuclease dicer; 100.0 1.3E-29 4.5E-34 267.3 14.4 142 732-927 13-188 (265)
5 1o0w_A Ribonuclease III, RNAse 100.0 6.8E-30 2.3E-34 269.0 6.5 150 730-927 17-166 (252)
6 2a11_A Ribonuclease III, RNAse 100.0 1.9E-29 6.7E-34 263.4 9.6 165 733-951 6-174 (242)
7 2nug_A Ribonuclease III, RNAse 100.0 1.4E-28 4.9E-33 253.7 14.0 132 733-927 3-136 (221)
8 3rv1_A K. polysporus DCR1; RNA 100.0 9.6E-29 3.3E-33 261.3 9.6 160 722-927 73-237 (246)
9 3rv0_A K. polysporus DCR1; RNA 99.9 2E-28 6.7E-33 269.2 9.3 185 721-951 72-266 (341)
10 2qvw_A GLP_546_48378_50642; di 99.9 1.4E-24 4.9E-29 258.9 13.1 101 823-927 647-749 (756)
11 1u61_A Hypothetical protein; s 99.8 1.9E-18 6.6E-23 169.0 12.2 105 821-926 10-126 (138)
12 2gsl_A Hypothetical protein; a 99.7 1.6E-16 5.3E-21 155.4 10.5 104 821-926 13-126 (137)
13 3c4b_A Endoribonuclease dicer; 99.4 7.3E-14 2.5E-18 147.5 6.2 57 965-1022 14-70 (265)
14 3o2r_A Ribonuclease III; struc 99.4 6.3E-14 2.2E-18 140.9 5.1 58 961-1022 23-80 (170)
15 3n3w_A Ribonuclease III; nucle 99.4 1.4E-13 4.7E-18 145.4 4.3 57 962-1022 24-80 (248)
16 1o0w_A Ribonuclease III, RNAse 99.3 3.7E-13 1.3E-17 141.9 1.5 61 962-1022 17-82 (252)
17 2a11_A Ribonuclease III, RNAse 99.3 5.7E-13 1.9E-17 139.3 1.7 57 965-1022 6-62 (242)
18 3rv1_A K. polysporus DCR1; RNA 99.2 1.5E-12 5.1E-17 138.1 2.7 56 967-1022 86-149 (246)
19 3rv0_A K. polysporus DCR1; RNA 99.1 1.2E-11 4.1E-16 136.4 2.8 55 968-1022 87-149 (341)
20 2nug_A Ribonuclease III, RNAse 96.6 0.0011 3.8E-08 68.4 3.6 31 965-995 3-33 (221)
21 1ztd_A Hypothetical protein PF 85.8 2.8 9.7E-05 40.2 8.5 82 824-925 13-98 (133)
22 3cjl_A Domain of unknown funct 30.3 12 0.00041 34.5 0.3 14 435-448 4-17 (88)
23 3tzt_A Glycosyl transferase fa 20.9 67 0.0023 33.9 3.9 31 627-659 239-271 (276)
No 1
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=100.00 E-value=2e-42 Score=411.67 Aligned_cols=389 Identities=17% Similarity=0.229 Sum_probs=233.3
Q ss_pred CeEEEeCCeEEEEeeeeeeecCCCCCCCCccee--eecceeEEE-eeccCCCCCCCccc---hhhHHHHHHHHHhccccc
Q psy14776 452 PTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVI--RFNIQYTIV-YIEEKVPNGFTVKD---TELFFNYLFHEILELVDL 525 (1022)
Q Consensus 452 ~T~i~~~~~~y~FeGFsllsH~~l~~~P~c~~~--r~ni~y~i~-~ieE~~P~~F~~~~---ldlf~~ylF~ellel~d~ 525 (1022)
.|++.-.|-++ |-||.-.|||.+|.+++- |.-+.-+|. ++...+- ++-.. +..|+.|||+.||-+..-
T Consensus 10 ~~~~~~~~~~~----~~~l~~~~l~~~~~f~~~~~~g~~~v~v~~~~~~~~~--l~~~q~~~~~~Fq~~lf~~~l~~~~~ 83 (756)
T 2qvw_A 10 CTVVTTRGPSH----WLLLLDTHLGTLPGFKVSAGRGLPAAEVYFEAGPRVS--LSRTDATIVAVYQSILFQLLGPTFPA 83 (756)
T ss_dssp EEEECSSCEEE----EEEEESSCCCSCCCEEECSBTTBCCEEEECCBCCCCC--CCHHHHHHHHHHHHHHHHHHCTTSCS
T ss_pred eEEEecCCcce----eeeeecCCCCCCCCceeecCCCceeEEEEeecCCccc--cCHHHHHHHHHHHHHHHHHHhcccch
Confidence 45555455443 578888899999999875 555666776 3544322 44333 566999999999774321
Q ss_pred ccc-------------C--CCCCCCCCeEEeeeceeeeccCCccccccHHHHH-HHHHhc-CCcccCHHhhhhhhccChh
Q psy14776 526 DLK-------------S--ANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVL-EFFTSS-FVPVISEKLAKSKDDLSTY 588 (1022)
Q Consensus 526 ~l~-------------~--~~~~~~cp~fH~mPRFv~~l~d~~~ellsm~~VL-~yll~~-~~~l~~~~~l~~~~~~~~~ 588 (1022)
.|. | ..+...++.|=|+|=+ ...+. +--.-|+ .+-+.+ .+.. .+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yll~Pl~----~~~~~--iDw~~v~~s~~~~~~~~~~-------------~~ 144 (756)
T 2qvw_A 84 SWTEIGATMPHNEYTFPRFISNPPQFATLAFLPLL----SPTSP--LDLRALMVTAQLMCDAKRL-------------SD 144 (756)
T ss_dssp CHHHHHHTCCGGGSSSTTCCCCCSCCCCEEEEEES----STTCC--CCSHHHHHHHHHHHTCCCG-------------GG
T ss_pred hhhhccccccccccccccccCCCcccceEEEEeCC----CCCCc--eehhhhhhhhhhccccCCC-------------cc
Confidence 111 0 0112222345566632 11111 1112221 111111 1111 12
Q ss_pred HHHh---hhhccceEEEeCCCCCccceeccccccccCCCccccceeeeccCCCcccCCCChhHHHHHHHHHHHHHHHhCC
Q psy14776 589 EWQD---FADGVKGMIIVKPGSKPCAMRVDQLDRESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANK 665 (1022)
Q Consensus 589 ~w~~---~~~~~k~~ivt~p~~kP~a~RvDqldr~~~~~~~~p~ivH~g~rp~~~sy~~~p~yqk~~r~~~klr~l~~n~ 665 (1022)
.|.+ ....+.|+||+-|-..+...|||.+|.+..-...||. ++...| +.+|.|-++-+.-.
T Consensus 145 ~~~d~~~~~~~l~g~vV~t~ynn~r~Y~i~~id~d~~P~S~F~~------~~~~~T----------y~dYYk~ky~i~I~ 208 (756)
T 2qvw_A 145 EYTDYSTLSASLHGRMVATPEISWSLYVVLGIDSTQTSLSYFTR------ANESIT----------YMRYYATAHNIHLR 208 (756)
T ss_dssp C------CTTTSTTCEEEETTTTTEEEEEEEEEEEEETTSEEEE------TTEEEE----------HHHHHHHTTCCCCS
T ss_pred ccccchhhHHHhCCCEEecCCCCceEEEEEEecCCCCCCCcCCC------CCCCCC----------HHHHHHHHcCcccc
Confidence 2443 3457788888776655578899888865543333431 111112 22344433321110
Q ss_pred CC----CCHHHHHHHHHHHHHHHHHhhcCceecceEEEEecCcccccCcChHHHH--HHhhhhhhhhhhhhhH-HHHHHH
Q psy14776 666 PK----RTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQ--HAMLIPVLICHLRFHR-SLNVLE 738 (1022)
Q Consensus 666 ~k----~~~~dk~kl~~k~~~L~~~r~~~~~~r~i~~~Ls~e~f~~tgI~~Dv~q--~alllPsii~~ir~~~-~L~~LE 738 (1022)
.. .....+.++... ++..-+..+.. ..-.++|+||-|..+||+.+++. .+.++|+|+++|+... .+++++
T Consensus 209 d~~QPLL~~~~~~~~~~~--r~~~~~~~~~~-~~~~v~L~PELC~vt~Lp~sl~~~~~~~~lPsil~rie~ll~a~~al~ 285 (756)
T 2qvw_A 209 AADLPLVAAVRLDDLKDH--QIPAPGSWDDL-APKLRFLPPELCLLLPDEFDLIRVQALQFLPEIAKHICDIQNTICALD 285 (756)
T ss_dssp CTTSEEEEEEETTTTTTC--CCCSTTC-CCS-CSSCEEECTTTCEECCTTSCTTHHHHHTTHHHHHHHHHHHHHHHHHHG
T ss_pred cCCCCeEEEEeccccccc--ccccccccccC-CccceeeCHHHheeecCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 00 000000000000 00000000111 12248999999999999999887 8999999999886533 344565
Q ss_pred HHhCCCcCCHHHHHHHhhCCCcccccCCCCc--ccccccccCCCCCCCCCccchhcccccccccchhHHHHhhhcccccc
Q psy14776 739 DRIQYKFQNRYLLQLALTHPSYRENFGTNPD--HARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVAT 816 (1022)
Q Consensus 739 ~~LGY~FkD~~LL~eALTHpSy~~~~G~~Pd--~a~nsltncg~r~pe~Gd~~ih~~~~rKrGi~tlInimsrmgkn~es 816 (1022)
+.+.....-+..+.+|+|+++...+ |.... .-+.|||. . .+
T Consensus 286 ~~~p~~~~i~~~~leAlT~~~~~~~-g~~~~~~~~~~AlTh--------------~--------------------s~-- 328 (756)
T 2qvw_A 286 KSFPDCGRIGGERYFAITAGLRLDQ-GRGRGLAGWRTPFGP--------------F--------------------GV-- 328 (756)
T ss_dssp GGSCCCSCCHHHHHHHHHHHHBCSC-CBTTBSBTTEEECBG--------------G--------------------GB--
T ss_pred hcCCcccccCHHHHHHHhhhhhhhh-ccccchhhhhhhccc--------------c--------------------cc--
Confidence 5444444445677899999886542 10000 00111111 0 00
Q ss_pred cCcCccchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcchhcccCCCccccccccch
Q psy14776 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKH 896 (1022)
Q Consensus 817 ~s~i~nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~eyIr~~~g~~l~~~~~~~K 896 (1022)
....|||||||||||||+++++.+||.+||+++||.|+.+|+++|+|.+|+.+|+++||++||+.++++. ..++
T Consensus 329 -~~~~nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l~~~~~e~-----~~~~ 402 (756)
T 2qvw_A 329 -SHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFSNNLV-----AKSK 402 (756)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCBCCSCC-------CCC
T ss_pred -cCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcChHHHhccCCCCC-----Cccc
Confidence 1125899999999999999999999999999999999999999999999999999999999999887643 4578
Q ss_pred hhHHHHHHHHHHHhhc-CCHHHHHHHHHHhhh
Q psy14776 897 AMANCFEALMGALFLD-GGIDVADQVFSSVLY 927 (1022)
Q Consensus 897 vLADVfEALIGAIYLD-sGle~A~kfL~~Ll~ 927 (1022)
++||+|||+|||||+| +|++.|.+|+..++.
T Consensus 403 ilaD~~EAliGAiylD~~G~~~a~~~v~~~~~ 434 (756)
T 2qvw_A 403 TWADMYEEIVGSIFTGPNGIYGCEEFLAKTLM 434 (756)
T ss_dssp CHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHB
T ss_pred HHHhHHHHHhCcccccccChHHHHHHHHHHHH
Confidence 9999999999999999 999999999987763
No 2
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=99.97 E-value=3.2e-31 Score=266.11 Aligned_cols=139 Identities=34% Similarity=0.613 Sum_probs=126.2
Q ss_pred HHHHHHHHHhCCCcCCHHHHHHHhhCCCcccccCCCCcccccccccCCCCCCCCCccchhcccccccccchhHHHHhhhc
Q psy14776 732 RSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLG 811 (1022)
Q Consensus 732 ~~L~~LE~~LGY~FkD~~LL~eALTHpSy~~~~G~~Pd~a~nsltncg~r~pe~Gd~~ih~~~~rKrGi~tlInimsrmg 811 (1022)
..+..||++|||+|+|+.||.+||||+||...
T Consensus 26 ~~l~~le~~lgy~F~d~~LL~~AlTH~S~~~~------------------------------------------------ 57 (170)
T 3o2r_A 26 KNIEKLEQSLTYEFKDKNLLIHALTHKSFKKS------------------------------------------------ 57 (170)
T ss_dssp -CHHHHHHHHTCCCSSHHHHHHHTBCTTSSTT------------------------------------------------
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHhcCCCCCCC------------------------------------------------
Confidence 34889999999999999999999999998631
Q ss_pred ccccccCcCccchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcchhcccCCCccccc
Q psy14776 812 RKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHE 891 (1022)
Q Consensus 812 kn~es~s~i~nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~eyIr~~~g~~l~~~ 891 (1022)
.+|||||||||+||+++++.+||.+||+++||.|+.+|+.+|+|.+|+.+|.++||++||+.+++.....+
T Consensus 58 ---------~~neRLEfLGDaVL~l~vs~~L~~~~P~~~eg~Lt~~r~~lVs~~~La~ia~~lgL~~~l~~~~~~~~~~~ 128 (170)
T 3o2r_A 58 ---------YNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGG 128 (170)
T ss_dssp ---------CCSHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHSSHHHHHHHHHHTTGGGTCBCCHHHHHTTG
T ss_pred ---------cchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHCHHHHHHHHHHcCcHHhhhcCcchhhcCC
Confidence 26999999999999999999999999999999999999999999999999999999999998776443344
Q ss_pred cccchhhHHHHHHHHHHHhhcCCHHHHHHHHHHhhh
Q psy14776 892 VELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927 (1022)
Q Consensus 892 ~~~~KvLADVfEALIGAIYLDsGle~A~kfL~~Ll~ 927 (1022)
...++++||+|||||||||+|+|++.|.+|+..++.
T Consensus 129 ~~~~~ilad~fEAliGAiylD~G~~~a~~~i~~~~~ 164 (170)
T 3o2r_A 129 KEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIE 164 (170)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 566899999999999999999999999999998864
No 3
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.97 E-value=1.1e-30 Score=275.13 Aligned_cols=162 Identities=31% Similarity=0.515 Sum_probs=126.8
Q ss_pred HHHHHHHHhCCCcCCHHHHHHHhhCCCcccccCCCCcccccccccCCCCCCCCCccchhcccccccccchhHHHHhhhcc
Q psy14776 733 SLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGR 812 (1022)
Q Consensus 733 ~L~~LE~~LGY~FkD~~LL~eALTHpSy~~~~G~~Pd~a~nsltncg~r~pe~Gd~~ih~~~~rKrGi~tlInimsrmgk 812 (1022)
.+..||++|||+|+|+.||.+||||+||...
T Consensus 27 ~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~------------------------------------------------- 57 (248)
T 3n3w_A 27 NIEKLEQSLTYEFKDKNLLIHALTHKSFKKS------------------------------------------------- 57 (248)
T ss_dssp THHHHHHHHTCCCSSHHHHHHHTBCTTSBTT-------------------------------------------------
T ss_pred HHHHHHHHHCCCCCCHHHHHHHhcCcCCCCC-------------------------------------------------
Confidence 3889999999999999999999999998631
Q ss_pred cccccCcCccchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcchhcccCCCcccccc
Q psy14776 813 KVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEV 892 (1022)
Q Consensus 813 n~es~s~i~nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~eyIr~~~g~~l~~~~ 892 (1022)
.+|||||||||+||+++++.+||.+||+++||.|+.+|+.+|+|.+|+.+|.++||++||+..++.....+.
T Consensus 58 --------~~neRLefLGDavL~~~v~~~L~~~~p~~~eg~Ls~~r~~lVs~~~La~~a~~lgL~~~l~~~~~e~~~~g~ 129 (248)
T 3n3w_A 58 --------YNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGK 129 (248)
T ss_dssp --------BCSHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHSHHHHHHHHHHTTGGGTCBCCHHHHHTTGG
T ss_pred --------CCcHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHHHHHHHHcCcHHHhhcCchhhhcCCC
Confidence 269999999999999999999999999999999999999999999999999999999999987654333345
Q ss_pred ccchhhHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcChHHHhhh-hcCCCCCCCcccCCC
Q psy14776 893 ELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQ-WMYYPQHPLQEQEPD 951 (1022)
Q Consensus 893 ~~~KvLADVfEALIGAIYLDsGle~A~kfL~~Ll~~~d~dLl~~-W~~~Pk~pLQE~~P~ 951 (1022)
..++++||+|||||||||+|+|++.|.+||..++.+....+... ....|+..|||..+.
T Consensus 130 ~~~~~lad~fEAliGAiyld~G~~~~~~~i~~~~~~~l~~~~~~~~~~dpks~LqE~~q~ 189 (248)
T 3n3w_A 130 EKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQG 189 (248)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC---------------------
T ss_pred CCccHHHHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHH
Confidence 66899999999999999999999999999998864321111111 234577778876643
No 4
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=99.96 E-value=1.3e-29 Score=267.32 Aligned_cols=142 Identities=31% Similarity=0.554 Sum_probs=121.7
Q ss_pred HHHHHHHHHhCCCcCCHHHHHHHhhCCCcccccCCCCcccccccccCCCCCCCCCccchhcccccccccchhHHHHhhhc
Q psy14776 732 RSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLG 811 (1022)
Q Consensus 732 ~~L~~LE~~LGY~FkD~~LL~eALTHpSy~~~~G~~Pd~a~nsltncg~r~pe~Gd~~ih~~~~rKrGi~tlInimsrmg 811 (1022)
..+..||++|||+|+|+.||.+||||+||....
T Consensus 13 ~~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~~----------------------------------------------- 45 (265)
T 3c4b_A 13 SGFETFEKKINYRFKNKAYLLQAFTHASYHYNT----------------------------------------------- 45 (265)
T ss_dssp TTHHHHHHHHTCCCSSHHHHHHHHBCTTCTTCC-----------------------------------------------
T ss_pred HHHHHHHHHhCCccCCHHHHHHHhcCcCcCCCC-----------------------------------------------
Confidence 347889999999999999999999999986420
Q ss_pred ccccccCcCccchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcchhcccC-------
Q psy14776 812 RKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAH------- 884 (1022)
Q Consensus 812 kn~es~s~i~nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~eyIr~~~------- 884 (1022)
...+|||||||||+||+++++.+||.+||++++|.|+.+|+++|||.+|+.+|.++||++||++..
T Consensus 46 -------~~~~neRLEfLGDaVL~l~v~~~L~~~~p~~~~g~Lt~lrs~lV~~~~La~~a~~lgl~~~l~~~~~~l~~~i 118 (265)
T 3c4b_A 46 -------ITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVI 118 (265)
T ss_dssp -------SSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHSSHHHHHHHHHHTTGGGTCBCCCHHHHHHH
T ss_pred -------CCCchHhHHHHhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhHHHHHHHHHcChHHHHHhcChhHHHHH
Confidence 014799999999999999999999999999999999999999999999999999999999997421
Q ss_pred ----------C---------------CccccccccchhhHHHHHHHHHHHhhcCCH--HHHHHHHHHhhh
Q psy14776 885 ----------G---------------SDLCHEVELKHAMANCFEALMGALFLDGGI--DVADQVFSSVLY 927 (1022)
Q Consensus 885 ----------g---------------~~l~~~~~~~KvLADVfEALIGAIYLDsGl--e~A~kfL~~Ll~ 927 (1022)
+ .....+...++++||+|||||||||+|+|+ +.|++||..++.
T Consensus 119 ~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~laD~~EAliGAiylD~G~~~~~~~~~i~~~~~ 188 (265)
T 3c4b_A 119 DDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQ 188 (265)
T ss_dssp HHHHHHHHHHHC------------------CCSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhcchhHHhhhcchhhhhhcccccchHHHHHHHHHhhheeeecCCCHHHHHHHHHHHHH
Confidence 0 001122345899999999999999999998 889999988764
No 5
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.96 E-value=6.8e-30 Score=269.01 Aligned_cols=150 Identities=30% Similarity=0.538 Sum_probs=129.5
Q ss_pred hhHHHHHHHHHhCCCcCCHHHHHHHhhCCCcccccCCCCcccccccccCCCCCCCCCccchhcccccccccchhHHHHhh
Q psy14776 730 FHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSK 809 (1022)
Q Consensus 730 ~~~~L~~LE~~LGY~FkD~~LL~eALTHpSy~~~~G~~Pd~a~nsltncg~r~pe~Gd~~ih~~~~rKrGi~tlInimsr 809 (1022)
+...+..||++|||+|+|+.||.+||||+||....+ +
T Consensus 17 ~~~~~~~l~~~lgy~f~~~~LL~~AlTH~S~~~~~~---------------------------------~---------- 53 (252)
T 1o0w_A 17 ERKIVEEFQKETGINFKNEELLFRALCHSSYANEQN---------------------------------Q---------- 53 (252)
T ss_dssp HHHHHHHHHHHHCCCCSSHHHHHHHHBCHHHHHHHH---------------------------------H----------
T ss_pred cHHHHHHHHHHHCCCCCCHHHHHHHhCCCCcccccc---------------------------------c----------
Confidence 577889999999999999999999999999864210 0
Q ss_pred hcccccccCcCccchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcchhcccCCCccc
Q psy14776 810 LGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 889 (1022)
Q Consensus 810 mgkn~es~s~i~nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~eyIr~~~g~~l~ 889 (1022)
.+.+ ...+|||||||||+||+++++.+||..||++++|.|+.+|+.+|+|.+|+.+|.++||++||+.+++....
T Consensus 54 ~~~~-----~~~~nerLefLGDavL~l~v~~~L~~~~p~~~eg~Ls~~r~~lV~~~~la~~a~~lgL~~~l~~~~~e~~~ 128 (252)
T 1o0w_A 54 AGRK-----DVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKT 128 (252)
T ss_dssp TTCT-----TCCCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHTSHHHHHHHHHHTTHHHHCBCCHHHHHT
T ss_pred cccc-----cCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCHHHHHHHHHHcCcHHhhccCchhhhc
Confidence 0000 01379999999999999999999999999999999999999999999999999999999999987654333
Q ss_pred cccccchhhHHHHHHHHHHHhhcCCHHHHHHHHHHhhh
Q psy14776 890 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927 (1022)
Q Consensus 890 ~~~~~~KvLADVfEALIGAIYLDsGle~A~kfL~~Ll~ 927 (1022)
.+...++++||+|||||||||+|+|++.|.+||..++.
T Consensus 129 ~~~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~~~ 166 (252)
T 1o0w_A 129 GGRDRDSILADAFEALLAAIYLDQGYEKIKELFEQEFE 166 (252)
T ss_dssp TGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCCCccHHHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456899999999999999999999999999988864
No 6
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.96 E-value=1.9e-29 Score=263.40 Aligned_cols=165 Identities=35% Similarity=0.451 Sum_probs=126.3
Q ss_pred HHHHHHHHhCCCcCCHHHHHHHhhCCCcccccCCCCcccccccccCCCCCCCCCccchhcccccccccchhHHHHhhhcc
Q psy14776 733 SLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGR 812 (1022)
Q Consensus 733 ~L~~LE~~LGY~FkD~~LL~eALTHpSy~~~~G~~Pd~a~nsltncg~r~pe~Gd~~ih~~~~rKrGi~tlInimsrmgk 812 (1022)
.+..||++|||+| |+.||.+||||+||....+
T Consensus 6 ~l~~l~~~lgy~f-~~~ll~~AlTH~S~~~~~~----------------------------------------------- 37 (242)
T 2a11_A 6 SRQPLLDALGVDL-PDELLSLALTHRSYAYENG----------------------------------------------- 37 (242)
T ss_dssp CCHHHHHHHTSCC-CHHHHHHHTBCHHHHHHTT-----------------------------------------------
T ss_pred HHHHHHHHHCCCC-CHHHHHHHhCCcCccccCC-----------------------------------------------
Confidence 3567999999999 9999999999999864210
Q ss_pred cccccCcCccchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHc---CCcchhcccCCCccc
Q psy14776 813 KVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI---GLEDFMLYAHGSDLC 889 (1022)
Q Consensus 813 n~es~s~i~nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkL---GL~eyIr~~~g~~l~ 889 (1022)
...+|||||||||+||+++++.+||..||++++|.|+.+|+.+|+|.+|+.+|.++ ||++||+.+++....
T Consensus 38 ------~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~la~~a~~l~~~gL~~~l~~~~~e~~~ 111 (242)
T 2a11_A 38 ------GLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANT 111 (242)
T ss_dssp ------SCCCTHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHSHHHHHHHHHHHSSSCSGGGCBCCHHHHHT
T ss_pred ------CCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCHHHHHHHHHHhhhhChHHHhhcCchhhhc
Confidence 11479999999999999999999999999999999999999999999999999999 999999987654333
Q ss_pred cccccchhhHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcChHHHh-hhhcCCCCCCCcccCCC
Q psy14776 890 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRF-KQWMYYPQHPLQEQEPD 951 (1022)
Q Consensus 890 ~~~~~~KvLADVfEALIGAIYLDsGle~A~kfL~~Ll~~~d~dLl-~~W~~~Pk~pLQE~~P~ 951 (1022)
.+...++++||+|||||||||+|+|++.|.+||..++.+...... ......|+..||+..+.
T Consensus 112 ~~~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~~~~~~~~~~~~~~~~dpkt~Lqe~~q~ 174 (242)
T 2a11_A 112 GGADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAA 174 (242)
T ss_dssp TGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTHHHHHHTTC-----------------
T ss_pred CCCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhhccccCChHHHHHHHHHH
Confidence 344568999999999999999999999999999988643211111 11224577778876543
No 7
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.95 E-value=1.4e-28 Score=253.73 Aligned_cols=132 Identities=33% Similarity=0.575 Sum_probs=122.1
Q ss_pred HHHHHHHHhCCCcCCHHHHHHHhhCCCcccccCCCCcccccccccCCCCCCCCCccchhcccccccccchhHHHHhhhcc
Q psy14776 733 SLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGR 812 (1022)
Q Consensus 733 ~L~~LE~~LGY~FkD~~LL~eALTHpSy~~~~G~~Pd~a~nsltncg~r~pe~Gd~~ih~~~~rKrGi~tlInimsrmgk 812 (1022)
.+..||++|||+|+|+.||.+||||+||...
T Consensus 3 ~~~~l~~~lg~~f~~~~ll~~AlTh~S~~~~------------------------------------------------- 33 (221)
T 2nug_A 3 MLEQLEKKLGYTFKDKSLLEKALTHVSYSKK------------------------------------------------- 33 (221)
T ss_dssp CHHHHHHHHTCCCSSHHHHHHHHBCTTTCSS-------------------------------------------------
T ss_pred HHHHHHHHhCCCcCCHHHHHHHhCCCCCCCC-------------------------------------------------
Confidence 4678999999999999999999999998531
Q ss_pred cccccCcCccchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcchhcccCCCcccccc
Q psy14776 813 KVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEV 892 (1022)
Q Consensus 813 n~es~s~i~nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~eyIr~~~g~~l~~~~ 892 (1022)
.+|||||||||+||+++++.+||..||++++|.|+.+|+.+|+|.+|+.+|.++||++||+.+++...
T Consensus 34 --------~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~la~~a~~l~l~~~l~~~~~~~~---- 101 (221)
T 2nug_A 34 --------EHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKIN---- 101 (221)
T ss_dssp --------SCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHHHHHHHTTTGGGTCBSCTTCCC----
T ss_pred --------CCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHHHHHHHHcChHHhhccCCCccc----
Confidence 25899999999999999999999999999999999999999999999999999999999998876432
Q ss_pred ccchhhHHHHHHHHHHHhhcCCHHH--HHHHHHHhhh
Q psy14776 893 ELKHAMANCFEALMGALFLDGGIDV--ADQVFSSVLY 927 (1022)
Q Consensus 893 ~~~KvLADVfEALIGAIYLDsGle~--A~kfL~~Ll~ 927 (1022)
++++||+|||||||||+|+|++. |.+|+..++.
T Consensus 102 --~~~lad~~EAliGAiyld~g~~~~~~~~~i~~~~~ 136 (221)
T 2nug_A 102 --ETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFK 136 (221)
T ss_dssp --HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred --chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999998 9999988774
No 8
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=99.95 E-value=9.6e-29 Score=261.26 Aligned_cols=160 Identities=23% Similarity=0.325 Sum_probs=122.6
Q ss_pred hhhhhhhhhhHHHHHHHHHhCCC-cCCHHHHHHHhhCCCcccccCCCCcccccccccCCCCCCCCCccchhccccccccc
Q psy14776 722 PVLICHLRFHRSLNVLEDRIQYK-FQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGI 800 (1022)
Q Consensus 722 Psii~~ir~~~~L~~LE~~LGY~-FkD~~LL~eALTHpSy~~~~G~~Pd~a~nsltncg~r~pe~Gd~~ih~~~~rKrGi 800 (1022)
..+..++.+......+|++|||+ |+|+.||.+||||+||...... ++
T Consensus 73 ~~~~~~~~~~~~~~~lE~~lgY~~F~d~~LL~~ALTH~S~~~~~~~--------~~------------------------ 120 (246)
T 3rv1_A 73 IDLFQSHDFKDSNTDVDMFIKYPVVYDENLENLAFMHKSFPNMNAH--------LN------------------------ 120 (246)
T ss_dssp HHHHHHTTCCSSCCGGGGGCSSCCCSCHHHHHHTTCCCC-----------------------------------------
T ss_pred HHHHHHcCCCcchHHHHHhcCCCCcCCHHHHHHHHcCCCccccccc--------cc------------------------
Confidence 34444455555667889999999 9999999999999999753100 00
Q ss_pred chhHHHHhhhcccccccCcCccchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcchh
Q psy14776 801 NTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880 (1022)
Q Consensus 801 ~tlInimsrmgkn~es~s~i~nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~eyI 880 (1022)
..+....+|||||||||+||+++++.+||..||+++||.|+.+|+.+|+|.+|+.+|.++||++||
T Consensus 121 --------------~~~~~~~~nERLEfLGDaVL~l~vs~~L~~~~P~~~eG~Lt~lRs~lVsn~~La~iA~~lgL~~~l 186 (246)
T 3rv1_A 121 --------------DAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRL 186 (246)
T ss_dssp -------------------CCCSHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHSHHHHHHHHHHTTSHHHH
T ss_pred --------------cccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHhCHHHHHHHHHHCCcHHHH
Confidence 000123579999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccc-cccccchhhHHHHHHHHHHHhhcC---CHHHHHHHHHHhhh
Q psy14776 881 LYAHGSDLC-HEVELKHAMANCFEALMGALFLDG---GIDVADQVFSSVLY 927 (1022)
Q Consensus 881 r~~~g~~l~-~~~~~~KvLADVfEALIGAIYLDs---Gle~A~kfL~~Ll~ 927 (1022)
++..+.... .+...++++||+|||+|||||+|+ |++.+++|+..++-
T Consensus 187 ~~~~g~~~~~~~~~~~~ilAD~fEAlIGAIylD~~g~~l~~v~~~l~~L~~ 237 (246)
T 3rv1_A 187 QGNIATPTRVVKDKMSKRYADCVQAYIGALVIDRFGTEFLDIKEWLEELSE 237 (246)
T ss_dssp CSSCC-----------CHHHHHHHHHHHHHHHHHCSSTTHHHHHHHHHHTH
T ss_pred hhcCCHhhhccCcccccHHHHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHH
Confidence 975433221 122457999999999999999998 49999999988753
No 9
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=99.95 E-value=2e-28 Score=269.22 Aligned_cols=185 Identities=22% Similarity=0.273 Sum_probs=131.5
Q ss_pred hhhhhhhhhhhHHHHHHHHHhCCC-cCCHHHHHHHhhCCCcccccCCCCcccccccccCCCCCCCCCccchhcccccccc
Q psy14776 721 IPVLICHLRFHRSLNVLEDRIQYK-FQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRG 799 (1022)
Q Consensus 721 lPsii~~ir~~~~L~~LE~~LGY~-FkD~~LL~eALTHpSy~~~~G~~Pd~a~nsltncg~r~pe~Gd~~ih~~~~rKrG 799 (1022)
+..+..++.+...+..+|++|||+ |+|+.||.+||||+||...... ++ +
T Consensus 72 i~~~~~~~~~~~~~~~lE~~igy~~F~d~~LL~~ALTH~S~~~~~~~--------~~---------~------------- 121 (341)
T 3rv0_A 72 LIDLFQSHDFKDSNTDVDMFIKYPVVYDENLENLAFMHKSFPNMNAH--------LN---------D------------- 121 (341)
T ss_dssp HHHHHHHTTCCSSCCTTGGGCSSCCCSCHHHHHHHHCCCCCC---CC--------SC---------H-------------
T ss_pred HHHHHHHcCCCcchhHHHHhcCCCCcCCHHHHHHHhcCcCccccccc--------cc---------c-------------
Confidence 344555566677778899999999 9999999999999999753100 00 0
Q ss_pred cchhHHHHhhhcccccccCcCccchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcch
Q psy14776 800 INTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF 879 (1022)
Q Consensus 800 i~tlInimsrmgkn~es~s~i~nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~ey 879 (1022)
......+|||||||||+||+++++.+||..||+++||.|+.+|+.+|+|.+|+.+|.++||++|
T Consensus 122 ----------------~~~~~~~nERLEfLGDavL~l~vs~~L~~~~P~~~eG~Lt~lr~~lVs~~~La~iA~~lgL~~~ 185 (341)
T 3rv0_A 122 ----------------AQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKR 185 (341)
T ss_dssp ----------------HHHGGGCTHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHSHHHHHHHHHHTTTTTT
T ss_pred ----------------ccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHhCHHHHHHHHHHcCcHHH
Confidence 0001257999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCccc-cccccchhhHHHHHHHHHHHhhcC---CHHHHHHHHHHhhhcChHHHhh----hh-cCCCCCCCcccCC
Q psy14776 880 MLYAHGSDLC-HEVELKHAMANCFEALMGALFLDG---GIDVADQVFSSVLYKDNEVRFK----QW-MYYPQHPLQEQEP 950 (1022)
Q Consensus 880 Ir~~~g~~l~-~~~~~~KvLADVfEALIGAIYLDs---Gle~A~kfL~~Ll~~~d~dLl~----~W-~~~Pk~pLQE~~P 950 (1022)
|++..+.... .+...++++||+|||||||||+|+ |++.|.+||..++.+....+.. .+ ...|+..||+..+
T Consensus 186 l~~~~g~~~~~~~~~~~~ilaD~fEAlIGAIylD~~~~G~~~a~~fi~~l~~~~l~~~~~~~~~~~~~~d~Kt~LqE~~Q 265 (341)
T 3rv0_A 186 LQGNIATPTRVVKDKMSKRYADCVEAYIGALVIDRFGTEFLDIKEWLEELSEKKLAKSSQMVIKEPLNKNAKNELAELLQ 265 (341)
T ss_dssp TCCSSCCC----CCHHHHHHHHHHHHHHHHHHHHHCSSTTHHHHHHHHHHTHHHHHCGGGC-------------------
T ss_pred hhhcCChhhhccCCccccHHHHHHHHHHHHHhhcCccCCHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHHH
Confidence 9975433221 112357899999999999999998 9999999999876422111111 12 3467888888765
Q ss_pred C
Q psy14776 951 D 951 (1022)
Q Consensus 951 ~ 951 (1022)
.
T Consensus 266 ~ 266 (341)
T 3rv0_A 266 I 266 (341)
T ss_dssp -
T ss_pred H
Confidence 4
No 10
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=99.91 E-value=1.4e-24 Score=258.90 Aligned_cols=101 Identities=26% Similarity=0.444 Sum_probs=95.0
Q ss_pred chHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcC--CcchhcccCCCccccccccchhhHH
Q psy14776 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG--LEDFMLYAHGSDLCHEVELKHAMAN 900 (1022)
Q Consensus 823 YERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLG--L~eyIr~~~g~~l~~~~~~~KvLAD 900 (1022)
|||||||||+||+++++.+||.+||+++||.|+.+|+++|+|.+|+.+|+++| |++||+.++++.. ..+|++||
T Consensus 647 neRLEfLGDaVL~l~vs~~L~~~~p~~~eG~Lt~lrs~lV~~~~La~~a~~lg~~L~~~l~~~~~e~~----~~~kilaD 722 (756)
T 2qvw_A 647 YQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKRFPSVVSEVIIESHPKIQ----PDSKVYGD 722 (756)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSHHHHHHHHHTSCTHHHHHHHHHSTTCC----TTCSHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHhCChHHHHHHHHhcccHHHHHhcCchhhc----CCccHHHH
Confidence 49999999999999999999999999999999999999999999999999999 9999999876432 56899999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhhh
Q psy14776 901 CFEALMGALFLDGGIDVADQVFSSVLY 927 (1022)
Q Consensus 901 VfEALIGAIYLDsGle~A~kfL~~Ll~ 927 (1022)
+|||||||||+|+|++.|++|+..++.
T Consensus 723 ~~EAliGAiylD~G~~~a~~~v~~~~~ 749 (756)
T 2qvw_A 723 TFEAILAAILLACGEEAAGAFVREHVL 749 (756)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999999988864
No 11
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=99.76 E-value=1.9e-18 Score=169.03 Aligned_cols=105 Identities=18% Similarity=0.238 Sum_probs=94.2
Q ss_pred ccchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHc----CCc----chhcccCCCcccccc
Q psy14776 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI----GLE----DFMLYAHGSDLCHEV 892 (1022)
Q Consensus 821 ~nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkL----GL~----eyIr~~~g~~l~~~~ 892 (1022)
-+.+||||||||||+++++.+||.. |..+||.||.+|+.+||-..++.++.++ +|. ++++.+++.......
T Consensus 10 ~~~erLefLGDAVlel~vr~~L~~~-~~~~eg~L~k~r~~~V~a~aqa~~~~~l~~~~~L~eeE~~~~r~Grn~~~~~~~ 88 (138)
T 1u61_A 10 LNSLALAYMGDAVYEQYIRYHLLQK-GKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNANSGTVP 88 (138)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHH-CCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCCCSSCCC
T ss_pred cCHHHHHHhhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHcCHHHHHHHHHHhhcccCCChHHHHHhhcCCCcccCCCC
Confidence 5789999999999999999999999 8899999999999999999999999999 998 799988775443334
Q ss_pred ccchh----hHHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q psy14776 893 ELKHA----MANCFEALMGALFLDGGIDVADQVFSSVL 926 (1022)
Q Consensus 893 ~~~Kv----LADVfEALIGAIYLDsGle~A~kfL~~Ll 926 (1022)
....+ +||+|||||||+|+|+|++.+..|+.+.+
T Consensus 89 k~~si~~Yr~A~~fEALiGalYLd~g~er~~~~i~~~~ 126 (138)
T 1u61_A 89 KNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKAI 126 (138)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCchhhhhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44567 99999999999999999999999998765
No 12
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=99.67 E-value=1.6e-16 Score=155.44 Aligned_cols=104 Identities=22% Similarity=0.212 Sum_probs=88.2
Q ss_pred ccchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcC--Cc----chhcccCCCcccccccc
Q psy14776 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG--LE----DFMLYAHGSDLCHEVEL 894 (1022)
Q Consensus 821 ~nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLG--L~----eyIr~~~g~~l~~~~~~ 894 (1022)
.+.+|||||||||++++++.+||.. |. ++|.|+..|+.+||...++.++.+++ |. .+++.+.+......+..
T Consensus 13 ~~~~~LefLGDAVleL~vr~~L~~~-~~-~~g~L~k~~~~~V~a~aqa~~~~~l~~~Lte~E~~~~rrGrna~~~~~~k~ 90 (137)
T 2gsl_A 13 YSGLELAFLGDAIWELEIRKYYLQF-GY-NIPTLNKYVKAKVNAKYQSLIYKKIINDLDEEFKVIGKRAKNSNIKTFPRS 90 (137)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTS-CB-CHHHHHHHHHHHHSHHHHHHHHHHHGGGSCHHHHHHHHHHHC--CCSCCSS
T ss_pred cCHHHHHHhhHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHhCHHHHHHHHHHHHHHhCHHHHHHHHhcccccCCCCCCC
Confidence 4789999999999999999999998 88 99999999999999999999999997 76 66666654322222223
Q ss_pred ch----hhHHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q psy14776 895 KH----AMANCFEALMGALFLDGGIDVADQVFSSVL 926 (1022)
Q Consensus 895 ~K----vLADVfEALIGAIYLDsGle~A~kfL~~Ll 926 (1022)
.. .+||+|||||||+|+|+|++.+..|+.+++
T Consensus 91 ~si~~Y~~At~fEALiGaLYLd~~~erl~~ll~~~~ 126 (137)
T 2gsl_A 91 CTVMEYKEATALEAIIGAMYLLKKEEEIKKIINIVI 126 (137)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CChHHHHHhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34 499999999999999999999999998875
No 13
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=99.43 E-value=7.3e-14 Score=147.52 Aligned_cols=57 Identities=32% Similarity=0.497 Sum_probs=51.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHhhcCCCCCCCCCCCCCchhhhhhhhhhhhHHHHHhcC
Q psy14776 965 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022 (1022)
Q Consensus 965 ~l~~lE~~LGY~Fkn~~LL~eAfTH~Sy~~~~~~~~~yQRLEFLGDAVLdlvVseyLY 1022 (1022)
.+..||+.|||+|+|+.||.+||||+||.++. ...+||||||||||||+++|++|||
T Consensus 14 ~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~~-~~~~neRLEfLGDaVL~l~v~~~L~ 70 (265)
T 3c4b_A 14 GFETFEKKINYRFKNKAYLLQAFTHASYHYNT-ITDCYQRLEFLGDAILDYLITKHLY 70 (265)
T ss_dssp THHHHHHHHTCCCSSHHHHHHHHBCTTCTTCC-SSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccCCHHHHHHHhcCcCcCCCC-CCCchHhHHHHhHHHHHHHHHHHHH
Confidence 46889999999999999999999999997653 3469999999999999999999997
No 14
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=99.42 E-value=6.3e-14 Score=140.89 Aligned_cols=58 Identities=38% Similarity=0.600 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHhhcCCCCCCCCCCCCCchhhhhhhhhhhhHHHHHhcC
Q psy14776 961 PLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022 (1022)
Q Consensus 961 p~l~~l~~lE~~LGY~Fkn~~LL~eAfTH~Sy~~~~~~~~~yQRLEFLGDAVLdlvVseyLY 1022 (1022)
+.+..+..||++|||+|+|+.||.+||||+||.+. .+||||||||||||+++|++|||
T Consensus 23 ~~m~~l~~le~~lgy~F~d~~LL~~AlTH~S~~~~----~~neRLEfLGDaVL~l~vs~~L~ 80 (170)
T 3o2r_A 23 NAMKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKS----YNNERLEFLGDAVLDLVVGEYLF 80 (170)
T ss_dssp ----CHHHHHHHHTCCCSSHHHHHHHTBCTTSSTT----CCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHhcCCCCCCC----cchHHHHHHHHHHHHHHHHHHHH
Confidence 34456899999999999999999999999999764 68999999999999999999986
No 15
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.38 E-value=1.4e-13 Score=145.36 Aligned_cols=57 Identities=39% Similarity=0.616 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHhhcCCCCCCCCCCCCCchhhhhhhhhhhhHHHHHhcC
Q psy14776 962 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022 (1022)
Q Consensus 962 ~l~~l~~lE~~LGY~Fkn~~LL~eAfTH~Sy~~~~~~~~~yQRLEFLGDAVLdlvVseyLY 1022 (1022)
.+..+..|+++|||+|+|+.||.+||||+||.+. .+||||||||||||+++|++|||
T Consensus 24 ~~~~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~----~~neRLefLGDavL~~~v~~~L~ 80 (248)
T 3n3w_A 24 AMKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKS----YNNERLEFLGDAVLDLVVGEYLF 80 (248)
T ss_dssp -CTTHHHHHHHHTCCCSSHHHHHHHTBCTTSBTT----BCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHCCCCCCHHHHHHHhcCcCCCCC----CCcHHHHHHHHHHHHHHHHHHHH
Confidence 3445899999999999999999999999999764 58999999999999999999986
No 16
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.29 E-value=3.7e-13 Score=141.88 Aligned_cols=61 Identities=34% Similarity=0.539 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHhhcCCCCCCCCCCCC-----CchhhhhhhhhhhhHHHHHhcC
Q psy14776 962 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG-----SNQRLEFLGDTVLQLITSDYLY 1022 (1022)
Q Consensus 962 ~l~~l~~lE~~LGY~Fkn~~LL~eAfTH~Sy~~~~~~~~-----~yQRLEFLGDAVLdlvVseyLY 1022 (1022)
....+..|+++|||+|+|+.||.+||||+||.++....+ +||||||||||||+++|++|||
T Consensus 17 ~~~~~~~l~~~lgy~f~~~~LL~~AlTH~S~~~~~~~~~~~~~~~nerLefLGDavL~l~v~~~L~ 82 (252)
T 1o0w_A 17 ERKIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILY 82 (252)
T ss_dssp HHHHHHHHHHHHCCCCSSHHHHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHCCCCCCHHHHHHHhCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999865421123 8999999999999999999996
No 17
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.28 E-value=5.7e-13 Score=139.34 Aligned_cols=57 Identities=44% Similarity=0.527 Sum_probs=51.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHhhcCCCCCCCCCCCCCchhhhhhhhhhhhHHHHHhcC
Q psy14776 965 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022 (1022)
Q Consensus 965 ~l~~lE~~LGY~Fkn~~LL~eAfTH~Sy~~~~~~~~~yQRLEFLGDAVLdlvVseyLY 1022 (1022)
.+..|++.|||+| ++.||.+||||+||.++.....+||||||||||||+++|++|||
T Consensus 6 ~l~~l~~~lgy~f-~~~ll~~AlTH~S~~~~~~~~~~nerLefLGDavL~~~v~~~L~ 62 (242)
T 2a11_A 6 SRQPLLDALGVDL-PDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALF 62 (242)
T ss_dssp CCHHHHHHHTSCC-CHHHHHHHTBCHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCC-CHHHHHHHhCCcCccccCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 3577999999999 99999999999999765444579999999999999999999986
No 18
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=99.24 E-value=1.5e-12 Score=138.07 Aligned_cols=56 Identities=30% Similarity=0.293 Sum_probs=45.7
Q ss_pred HHHHHHhCCC-CCCHHHHHHhhcCCCCCCCC-------CCCCCchhhhhhhhhhhhHHHHHhcC
Q psy14776 967 QYLEYSSGVI-FNHIRLLARVFTTRSMGYTN-------LTLGSNQRLEFLGDTVLQLITSDYLY 1022 (1022)
Q Consensus 967 ~~lE~~LGY~-Fkn~~LL~eAfTH~Sy~~~~-------~~~~~yQRLEFLGDAVLdlvVseyLY 1022 (1022)
..+|++|||+ |+|+.||.+||||+||.+.. ....+||||||||||||+++|++|||
T Consensus 86 ~~lE~~lgY~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDaVL~l~vs~~L~ 149 (246)
T 3rv1_A 86 TDVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVY 149 (246)
T ss_dssp CGGGGGCSSCCCSCHHHHHHTTCCCC--------------CCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCcCCHHHHHHHHcCCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999 99999999999999997653 13568999999999999999999997
No 19
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=99.12 E-value=1.2e-11 Score=136.45 Aligned_cols=55 Identities=31% Similarity=0.303 Sum_probs=47.2
Q ss_pred HHHHHhCCC-CCCHHHHHHhhcCCCCCCCCC-------CCCCchhhhhhhhhhhhHHHHHhcC
Q psy14776 968 YLEYSSGVI-FNHIRLLARVFTTRSMGYTNL-------TLGSNQRLEFLGDTVLQLITSDYLY 1022 (1022)
Q Consensus 968 ~lE~~LGY~-Fkn~~LL~eAfTH~Sy~~~~~-------~~~~yQRLEFLGDAVLdlvVseyLY 1022 (1022)
.||++|||+ |+|+.||.+||||+||.+... ...+||||||||||||+++|++|||
T Consensus 87 ~lE~~igy~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDavL~l~vs~~L~ 149 (341)
T 3rv0_A 87 DVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVY 149 (341)
T ss_dssp TTGGGCSSCCCSCHHHHHHHHCCCCCC---CCSCHHHHGGGCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcCCHHHHHHHhcCcCccccccccccccccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 468889999 999999999999999987532 2458999999999999999999997
No 20
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=96.56 E-value=0.0011 Score=68.38 Aligned_cols=31 Identities=29% Similarity=0.331 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHhhcCCCCCCC
Q psy14776 965 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYT 995 (1022)
Q Consensus 965 ~l~~lE~~LGY~Fkn~~LL~eAfTH~Sy~~~ 995 (1022)
.+..|++.|||+|+|+.||.+||||+||.+.
T Consensus 3 ~~~~l~~~lg~~f~~~~ll~~AlTh~S~~~~ 33 (221)
T 2nug_A 3 MLEQLEKKLGYTFKDKSLLEKALTHVSYSKK 33 (221)
T ss_dssp CHHHHHHHHTCCCSSHHHHHHHHBCTTTCSS
T ss_pred HHHHHHHHhCCCcCCHHHHHHHhCCCCCCCC
Confidence 3678999999999999999999999999754
No 21
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=85.77 E-value=2.8 Score=40.15 Aligned_cols=82 Identities=28% Similarity=0.312 Sum_probs=63.2
Q ss_pred hHHHHhhhhHhhHHHHHhh--hhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcchhcccCCCccccccccchhhHHH
Q psy14776 824 ERLEFLGDAVVEFITSIHL--FHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 901 (1022)
Q Consensus 824 ERLEFLGDAVLKfiVS~~L--F~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~eyIr~~~g~~l~~~~~~~KvLADV 901 (1022)
.-|.-+||+++.|+.+..| |.-+|.-. -|-|..|+..-...||...+ +.. -.+.-+|+
T Consensus 13 K~LakfGDSLvNfl~SlALse~lG~Ptg~----------rVPnaSLaiale~agL~~~~--pR~--------DKh~kGd~ 72 (133)
T 1ztd_A 13 KGLAKFGDSLINFLYSLALTEFLGKPTGD----------RVPNASLAIALELTGLSKNL--RRV--------DKHAKGDY 72 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCC----------CCCHHHHHHHHHHHTGGGGC--CGG--------GTTCHHHH
T ss_pred chHHHHhHHHHHHHHHHHHHHHhCCCCCC----------CCCChHHHHHHHHhhhhhcC--Ccc--------cccCccHH
Confidence 5589999999999999887 55667543 37788888888888888777 321 23567999
Q ss_pred HHHHHHHHhhcCC--HHHHHHHHHHh
Q psy14776 902 FEALMGALFLDGG--IDVADQVFSSV 925 (1022)
Q Consensus 902 fEALIGAIYLDsG--le~A~kfL~~L 925 (1022)
.||+|+-.++.+- .+.|..++..-
T Consensus 73 aEA~iAyAWleG~is~eEaveilk~n 98 (133)
T 1ztd_A 73 AEALIAKAWLMGLISEREAVEIIKKN 98 (133)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccccHHHHHHHHHhc
Confidence 9999999999986 47777776553
No 22
>3cjl_A Domain of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Pectobacterium atrosepticum SCRI1043}
Probab=30.27 E-value=12 Score=34.49 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=12.4
Q ss_pred eeEEEEEcCCCCCC
Q psy14776 435 YHYRVTVSPPTNFL 448 (1022)
Q Consensus 435 ~hyri~v~p~~N~~ 448 (1022)
|+|||||+|-++--
T Consensus 4 ~~YrITve~l~~~~ 17 (88)
T 3cjl_A 4 NIYQITVEEKAEHQ 17 (88)
T ss_dssp EEEEEEEEESSTTC
T ss_pred ceEEEEEEEccCCC
Confidence 89999999988776
No 23
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=20.86 E-value=67 Score=33.94 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=24.0
Q ss_pred ccceeeecc--CCCcccCCCChhHHHHHHHHHHHH
Q psy14776 627 YPDAVHFGS--RPLQLCFAGSPDFQKLWKGYVKLR 659 (1022)
Q Consensus 627 ~p~ivH~g~--rp~~~sy~~~p~yqk~~r~~~klr 659 (1022)
-|.||||.= +|= ...+...|.++|+.|.++.
T Consensus 239 ~~~iiHy~g~~KPW--~~~~~~~~~~~w~~Y~~~~ 271 (276)
T 3tzt_A 239 HTVVLHFCGRDKPW--KKNHRNKFTSLYKHYMSLT 271 (276)
T ss_dssp HCCEEECCSSCCTT--STTCCSTTHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCc--CCCCCCchHHHHHHHHHHH
Confidence 489999974 454 3445679999999999983
Done!