Your job contains 1 sequence.
>psy14776
MSRHHMSSSHSSRGSCSFSSPMSEDVKPNIQQMALNEPSSSALQFNTVDVKQPPPGFSQS
CNHKILVSKSFDCKTGTTQVDNLPSTNVSNQSNPITPQTSTGRTNQYNRWTICPAPMCQI
SPTQLHLKHPLAGQTNIMSRSMHRDDESNQRRNRSSSRSKNNGYSHRSENSKSSPTRTET
NLKRRRSRSKSRSESKSRSEVPRQACARRSRSRSRILSPKRSGEALSNLDKWRMNNCSSE
REMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDSYECTQKTRTICDEFES
VIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEE
DAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDE
QAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPT
CKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFH
IMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGM
IIVKPGSKPCAMRVDQLDRESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRH
LVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAML
IPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGV
RQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSI
HLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMAN
CFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQS
PLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDY
LY
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14776
(1022 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0026722 - symbol:drosha "drosha" species:7227 "Dro... 2289 1.3e-246 2
MGI|MGI:1261425 - symbol:Drosha "drosha, ribonuclease typ... 2073 3.8e-221 3
UNIPROTKB|F1SP38 - symbol:DROSHA "Uncharacterized protein... 2076 4.2e-219 2
UNIPROTKB|Q9NRR4 - symbol:DROSHA "Ribonuclease 3" species... 2077 8.6e-219 2
UNIPROTKB|E9PTR3 - symbol:E9PTR3 "Uncharacterized protein... 2071 1.1e-218 2
UNIPROTKB|F1NQC9 - symbol:DROSHA "Uncharacterized protein... 2067 9.9e-218 2
UNIPROTKB|F1LQY5 - symbol:F1LQY5 "Uncharacterized protein... 2071 1.3e-217 2
UNIPROTKB|E1BGY0 - symbol:DROSHA "Uncharacterized protein... 2065 5.4e-217 2
ZFIN|ZDB-GENE-070209-23 - symbol:rnasen "ribonuclease typ... 2072 2.0e-214 1
UNIPROTKB|F1PJL5 - symbol:DROSHA "Uncharacterized protein... 1364 2.1e-139 1
WB|WBGene00009163 - symbol:drsh-1 species:6239 "Caenorhab... 1093 1.1e-110 1
UNIPROTKB|O01326 - symbol:drsh-1 "Ribonuclease 3" species... 1093 1.1e-110 1
UNIPROTKB|Q61XX9 - symbol:drsh-1 "Ribonuclease 3" species... 1050 4.0e-106 1
UNIPROTKB|J9NRX6 - symbol:DROSHA "Uncharacterized protein... 623 3.8e-64 2
UNIPROTKB|H7C5U6 - symbol:DROSHA "Ribonuclease 3" species... 417 1.6e-41 2
RGD|1307626 - symbol:Drosha "drosha, ribonuclease type II... 236 1.3e-18 1
UNIPROTKB|F1M2R2 - symbol:F1M2R2 "Uncharacterized protein... 236 1.3e-18 1
TIGR_CMR|BA_3987 - symbol:BA_3987 "ribonuclease III" spec... 203 1.5e-17 2
TIGR_CMR|DET_1025 - symbol:DET_1025 "ribonuclease III" sp... 192 1.6e-17 2
TIGR_CMR|ECH_1054 - symbol:ECH_1054 "ribonuclease III" sp... 184 1.4e-16 2
TIGR_CMR|CHY_1444 - symbol:CHY_1444 "ribonuclease III" sp... 187 1.8e-16 2
TIGR_CMR|CJE_1807 - symbol:CJE_1807 "ribonuclease III" sp... 163 9.8e-14 2
TIGR_CMR|SO_1348 - symbol:SO_1348 "ribonuclease III" spec... 171 1.2e-13 2
TIGR_CMR|CBU_1503 - symbol:CBU_1503 "ribonuclease III" sp... 167 1.8e-13 2
TIGR_CMR|APH_1149 - symbol:APH_1149 "ribonuclease III" sp... 165 3.8e-12 2
UNIPROTKB|Q9KPB2 - symbol:rnc "Ribonuclease 3" species:24... 173 7.0e-12 1
TIGR_CMR|VC_2461 - symbol:VC_2461 "ribonuclease III" spec... 173 7.0e-12 1
DICTYBASE|DDB_G0268410 - symbol:drnB "putative RNase III"... 183 1.0e-11 4
UNIPROTKB|P0A7Y0 - symbol:rnc "RNase III" species:83333 "... 170 1.5e-11 1
DICTYBASE|DDB_G0274077 - symbol:drnA-2 "putative RNAse II... 162 8.8e-11 4
DICTYBASE|DDB_G0273051 - symbol:drnA-1 "putative RNAse II... 162 8.8e-11 4
UNIPROTKB|P66666 - symbol:rnc "Ribonuclease 3" species:17... 168 2.9e-10 1
TIGR_CMR|NSE_0918 - symbol:NSE_0918 "ribonuclease III" sp... 152 5.7e-10 2
TIGR_CMR|GSU_2228 - symbol:GSU_2228 "ribonuclease III" sp... 164 1.6e-09 1
POMBASE|SPBC119.11c - symbol:pac1 "double-strand-specific... 164 9.0e-09 1
TIGR_CMR|CPS_4122 - symbol:CPS_4122 "ribonuclease III" sp... 148 1.7e-07 2
ASPGD|ASPL0000041548 - symbol:dclB species:162425 "Emeric... 162 4.1e-07 2
CGD|CAL0001312 - symbol:DCR1 species:5476 "Candida albica... 159 3.0e-06 3
UNIPROTKB|Q5A694 - symbol:RNT1 "Probable ribonuclease III... 159 3.0e-06 3
RGD|1309381 - symbol:Dicer1 "dicer 1, ribonuclease type I... 89 3.2e-06 3
POMBASE|SPCC188.13c - symbol:dcr1 "dicer" species:4896 "S... 143 1.3e-05 1
UNIPROTKB|B3KRG4 - symbol:DICER1 "Endoribonuclease Dicer"... 101 2.7e-05 3
WB|WBGene00000939 - symbol:dcr-1 species:6239 "Caenorhabd... 98 2.8e-05 3
UNIPROTKB|A4RHU9 - symbol:DCL2 "Dicer-like protein 2" spe... 140 3.0e-05 1
UNIPROTKB|A7LFZ6 - symbol:DCL4 "Endoribonuclease Dicer ho... 112 9.0e-05 2
TAIR|locus:2149259 - symbol:DCL4 "dicer-like 4" species:3... 120 0.00014 4
UNIPROTKB|Q6TUI4 - symbol:DICER1 "Endoribonuclease Dicer"... 89 0.00015 4
TIGR_CMR|SPO_3198 - symbol:SPO_3198 "ribonuclease III" sp... 109 0.00020 2
UNIPROTKB|F1MCQ5 - symbol:DICER1 "Endoribonuclease Dicer"... 89 0.00024 4
UNIPROTKB|Q9UPY3 - symbol:DICER1 "Endoribonuclease Dicer"... 89 0.00037 3
ZFIN|ZDB-GENE-030131-3445 - symbol:dicer1 "Dicer1, Dcr-1 ... 101 0.00039 3
SGD|S000004852 - symbol:RNT1 "Nuclear dsRNA-specific ribo... 123 0.00047 1
UNIPROTKB|E9PU15 - symbol:Dicer1 "Protein Dicer1" species... 89 0.00057 3
>FB|FBgn0026722 [details] [associations]
symbol:drosha "drosha" species:7227 "Drosophila melanogaster"
[GO:0031053 "primary miRNA processing" evidence=ISS;IMP]
[GO:0005634 "nucleus" evidence=ISS] [GO:0004525 "ribonuclease III
activity" evidence=ISS;NAS] [GO:0003725 "double-stranded RNA
binding" evidence=IEA;ISS] [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030727
"germarium-derived female germ-line cyst formation" evidence=IMP]
[GO:0007294 "germarium-derived oocyte fate determination"
evidence=IMP] HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 EMBL:AE013599 GO:GO:0007294 GO:GO:0022008
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725 GO:GO:0016075
GO:GO:0030727 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 GO:GO:0031053 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 KO:K03685 HSSP:O67082 OMA:RFHKSLD
CTD:29102 ChiTaRS:DROSHA EMBL:AF116572 EMBL:BT023503
RefSeq:NP_477436.1 UniGene:Dm.4482 SMR:Q7KNF1 IntAct:Q7KNF1
STRING:Q7KNF1 EnsemblMetazoa:FBtr0088850 GeneID:35747
KEGG:dme:Dmel_CG8730 UCSC:CG8730-RA FlyBase:FBgn0026722
InParanoid:Q7KNF1 OrthoDB:EOG4BRV1K GenomeRNAi:35747 NextBio:795024
Uniprot:Q7KNF1
Length = 1327
Score = 2289 (810.8 bits), Expect = 1.3e-246, Sum P(2) = 1.3e-246
Identities = 426/668 (63%), Positives = 521/668 (77%)
Query: 368 MMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPD 427
M EL K HP R+H +LW ND GEMNDGPLCRCS+KSRR GIRH IY GE C+P+
Sbjct: 364 MEELSRKVQHPQRVHADLWHNDAGEMNDGPLCRCSAKSRRIGIRHGIYPGETGYKLCDPN 423
Query: 428 TNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFN 487
+NNA KL+HYR+++SPPTNFL PT+I+HD EF+FEGFSL SH L LP CKVIRFN
Sbjct: 424 SNNAGKLFHYRISISPPTNFLTKTPTIIKHDEHEFLFEGFSLLSHVRLSDLPVCKVIRFN 483
Query: 488 IQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLK----SANNKDGCPQFHIMP 543
I+YTI Y EEK+P FT+ + ++FF YLFHE+LELVD +L S N ++ CP FH P
Sbjct: 484 IEYTIEYEEEKMPENFTIHELDIFFKYLFHELLELVDFNLMPNLPSGNVEESCPAFHFFP 543
Query: 544 RFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIV 603
RFVR+L DNGKE+L M VL + + ++ + + +S EWQ++ D +KGM++
Sbjct: 544 RFVRDLPDNGKEVLAMVEVLRYLLDNSAQLVERQQLLHLNQISQSEWQNYVDFIKGMLVT 603
Query: 604 KPGSKPCAMRVDQLDRES---------ETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKG 654
KPG KPC++RVDQLDR + ET +P VHFG QL +AG+P++QK W+
Sbjct: 604 KPGYKPCSLRVDQLDRNNSDLPECVDRETGISHPAIVHFGICHPQLSYAGNPEYQKAWRE 663
Query: 655 YVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDM 714
YVK RHL+AN K + +DKR+L KEQRLQEMRT +MKR +TVAISS GFYRTGIMCD+
Sbjct: 664 YVKYRHLMANMSKPSFKDKRKLEEKEQRLQEMRTQGRMKRNITVAISSEGFYRTGIMCDV 723
Query: 715 VQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNS 774
VQHAMLIPVL HLRFH+SL++LE+ I Y+F+NRYLLQLALTHPSY+EN+GTNPDHARNS
Sbjct: 724 VQHAMLIPVLTGHLRFHKSLDLLEESIGYRFKNRYLLQLALTHPSYKENYGTNPDHARNS 783
Query: 775 LSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVV 834
L+NCG+RQPEYGDR+IH+ NTRKRGINTL++IMS+ G++ T SNITHNERLEFLGDAVV
Sbjct: 784 LTNCGIRQPEYGDRKIHYMNTRKRGINTLVSIMSRFGKEHETVSNITHNERLEFLGDAVV 843
Query: 835 EFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVEL 894
EF++SIHLF +FP++EEGGLATYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLCHE+EL
Sbjct: 844 EFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELEL 903
Query: 895 KHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDR 954
+HAMANCFEALMGAL LDGGI VAD+VF+ L++ +E W P+HPLQEQEP GDR
Sbjct: 904 RHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDEKLLSIWKNLPEHPLQEQEPLGDR 963
Query: 955 QWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQ 1014
++ +LK+L E S G+ F HIRLLAR FT RS+G+T+LTLGSNQRLEFLGDTVLQ
Sbjct: 964 SCIDSYRVLKELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQ 1023
Query: 1015 LITSDYLY 1022
LI S+YLY
Sbjct: 1024 LICSEYLY 1031
Score = 152 (58.6 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 35/105 (33%), Positives = 62/105 (59%)
Query: 816 TESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 875
T + N+RLEFLGD V++ I S +L+ FP+ EG L+ R+++V N+ A + +G
Sbjct: 1004 THLTLGSNQRLEFLGDTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLG 1063
Query: 876 LEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQ 920
+ + +YA+ +++ K A+ EA +GAL++D G+ +Q
Sbjct: 1064 MPKYAVYANPKA---DLKTKDR-ADLLEAFLGALYVDKGLLYCEQ 1104
Score = 110 (43.8 bits), Expect = 1.3e-246, Sum P(2) = 1.3e-246
Identities = 26/88 (29%), Positives = 43/88 (48%)
Query: 229 LDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDSYECT 288
L +W N C + +K N L+ EAD +E W RS+PA+LYY + ++
Sbjct: 239 LRQWCSNFCEKPEDYVKKMNALS--EADAPVES----WVRSSPAELYYERTKSENEVRGR 292
Query: 289 QKTRTICDEF-ESVIQNFVSVKESKPQF 315
+ + +C F E ++Q V+E P +
Sbjct: 293 ARLQKLCTLFDEELLQRAKRVREKLPVY 320
>MGI|MGI:1261425 [details] [associations]
symbol:Drosha "drosha, ribonuclease type III" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004521 "endoribonuclease activity" evidence=IDA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0010468 "regulation
of gene expression" evidence=IMP] [GO:0010586 "miRNA metabolic
process" evidence=IMP] [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=IDA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 MGI:MGI:1261425 GO:GO:0005730 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0042254 GO:GO:0003725 GO:GO:0010586
GO:GO:0031054 GO:GO:0004521 GO:GO:0016075 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 KO:K03685
HSSP:O67082 CTD:29102 HOGENOM:HOG000122291 OMA:SGKEKNY
OrthoDB:EOG4VQ9NG ChiTaRS:DROSHA EMBL:AK144147 EMBL:AK148640
EMBL:BC088999 IPI:IPI00336345 RefSeq:NP_001123621.1
RefSeq:NP_081075.3 UniGene:Mm.293142 ProteinModelPortal:Q5HZJ0
SMR:Q5HZJ0 STRING:Q5HZJ0 PhosphoSite:Q5HZJ0 PRIDE:Q5HZJ0
Ensembl:ENSMUST00000090292 Ensembl:ENSMUST00000169061 GeneID:14000
KEGG:mmu:14000 UCSC:uc007via.2 InParanoid:Q5HZJ0 NextBio:284892
Bgee:Q5HZJ0 Genevestigator:Q5HZJ0 Uniprot:Q5HZJ0
Length = 1373
Score = 2073 (734.8 bits), Expect = 3.8e-221, Sum P(3) = 3.8e-221
Identities = 380/658 (57%), Positives = 504/658 (76%)
Query: 370 ELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTN 429
E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+ C P TN
Sbjct: 506 EIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTN 565
Query: 430 NADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQ 489
NA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL +P CKVIRFNI
Sbjct: 566 NAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNID 625
Query: 490 YTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPRFV 546
YTI +IEE +P F VK ELF +LF +ILEL D +LK +D CP+FH MPRFV
Sbjct: 626 YTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPRFV 685
Query: 547 RELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPG 606
R L D GKE+L M+++L + ++ E+ + EWQ +A+ KGMI+ PG
Sbjct: 686 RFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPG 745
Query: 607 SKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVAN 664
+KP ++R+DQLDRE ++ +P VHFG RP QL +AG P +QKLWK YVKLRHL+AN
Sbjct: 746 TKPSSVRIDQLDREQFNPEVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLAN 805
Query: 665 KPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVL 724
PK DK++LA +E+ LQ++R + M+R VTV +SS+GF++TGI D+ QHAM++PVL
Sbjct: 806 SPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVL 865
Query: 725 ICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPE 784
H+R+H+ L L+ I Y FQ+R LLQLA+THPS+ NFG NPDHARNSLSNCG+RQP+
Sbjct: 866 THHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPK 925
Query: 785 YGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFH 844
YGDR++H + RK+GINTLINIMS+LG+ T S I HNERLEFLGDAVVEF+TS+HL++
Sbjct: 926 YGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYY 985
Query: 845 VFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEA 904
+FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEA
Sbjct: 986 LFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEA 1045
Query: 905 LMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLK 964
L+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L+
Sbjct: 1046 LIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQ 1104
Query: 965 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
+L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1105 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1162
Score = 151 (58.2 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 34/108 (31%), Positives = 65/108 (60%)
Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
HN+R+EFLGD++++ + + +LF FPD EG L R+++V N+ A +A+ +G+++
Sbjct: 1141 HNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE--- 1197
Query: 882 YAHGSDLCHE-VELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
YA +D V L+ +A+ E+ + AL++D ++ F +V +
Sbjct: 1198 YAITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYV-HTFMNVCF 1244
Score = 62 (26.9 bits), Expect = 3.8e-221, Sum P(3) = 3.8e-221
Identities = 23/101 (22%), Positives = 48/101 (47%)
Query: 230 DKWRMNNCSSEREMTEKFNTLAAMEADQI----IEEE-----KKIWTRSAPADLYYTK-- 278
D+W ++ S +E + + ++ EA+++ EEE K +W R ++ YY+
Sbjct: 369 DRWS-DSQGSGKE--KNYTSIKEKEAEEVPPEKTEEEEEELLKPVWIRCTHSESYYSSDP 425
Query: 279 --RTEDDSYECTQKTRTICDEFESVIQNFVS-VKESKPQFD 316
+ D + T + R + D+FE + N K ++P ++
Sbjct: 426 MDQVGDSTVVGTSRLRDLYDKFEEELGNRQEKAKAARPPWE 466
Score = 43 (20.2 bits), Expect = 8.2e-05, Sum P(3) = 8.2e-05
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 668 RTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRT 708
R+ E + R + E+R E R S RG T R + R+
Sbjct: 243 RSLERRERGRSPERRRPESRYRSDYDRGRTPPPRHRSYERS 283
Score = 40 (19.1 bits), Expect = 3.8e-221, Sum P(3) = 3.8e-221
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 53 PPPGFSQSCNHKILVSKSFDCKTGTTQVDNLPSTNVSNQSN 93
PPPGF+ N+ S + + T +LP ++ N
Sbjct: 176 PPPGFNSYQNNSSSFPPSAN-SSSTPHFRHLPPYSLPKAQN 215
>UNIPROTKB|F1SP38 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:CU633306
EMBL:FP325179 EMBL:FP326694 Ensembl:ENSSSCT00000018300
ArrayExpress:F1SP38 Uniprot:F1SP38
Length = 1328
Score = 2076 (735.8 bits), Expect = 4.2e-219, Sum P(2) = 4.2e-219
Identities = 381/658 (57%), Positives = 504/658 (76%)
Query: 370 ELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTN 429
E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+ C P TN
Sbjct: 461 EIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTN 520
Query: 430 NADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQ 489
NA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL +P CKVIRFNI
Sbjct: 521 NAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNID 580
Query: 490 YTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPRFV 546
YTI +IEE +P F VK ELF +LF +ILEL D +LK +D CP+FH MPRFV
Sbjct: 581 YTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPRFV 640
Query: 547 RELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPG 606
R L D GKE+L M+++L + ++ E+ + EWQ +A+ KGMI+ PG
Sbjct: 641 RFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPG 700
Query: 607 SKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVAN 664
+KP ++R+DQLDRE D+ +P VHFG RP QL +AG P +QKLWK YVKLRHL+AN
Sbjct: 701 TKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLAN 760
Query: 665 KPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVL 724
PK DK++LA +E+ LQ++R + M+R VTV +SS+GF++TGI D+ QHAM++PVL
Sbjct: 761 SPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVL 820
Query: 725 ICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPE 784
H+R+H+ L L+ I Y FQ+R LLQLA+THPS+ NFG NPDHARNSLSNCG+RQP+
Sbjct: 821 THHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPK 880
Query: 785 YGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFH 844
YGDR++H + RK+GINTLINIMS+LG+ T S I HNERLEFLGDAVVEF+TS+HL++
Sbjct: 881 YGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYY 940
Query: 845 VFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEA 904
+FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEA
Sbjct: 941 LFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEA 1000
Query: 905 LMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLK 964
L+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L+
Sbjct: 1001 LIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQ 1059
Query: 965 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
+L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1060 KLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1117
Score = 151 (58.2 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 34/108 (31%), Positives = 65/108 (60%)
Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
HN+R+EFLGD++++ + + +LF FPD EG L R+++V N+ A +A+ +G+++
Sbjct: 1096 HNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE--- 1152
Query: 882 YAHGSDLCHE-VELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
YA +D V L+ +A+ E+ + AL++D ++ F +V +
Sbjct: 1153 YAITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYV-HTFMNVCF 1199
Score = 63 (27.2 bits), Expect = 4.2e-219, Sum P(2) = 4.2e-219
Identities = 24/98 (24%), Positives = 44/98 (44%)
Query: 230 DKWRMNNCSS-EREMT---EKFNTLAAMEADQIIEEE--KKIWTRSAPADLYYTK----R 279
D+W N S E+ T +K A + ++ EEE K +W R ++ YY+ +
Sbjct: 324 DRWSDNQSSGKEKNYTSIKDKEPEEALPDKNEEEEEELLKPVWIRCTHSENYYSSDPMDQ 383
Query: 280 TEDDSYECTQKTRTICDEFESVI-QNFVSVKESKPQFD 316
D + T + R + D+FE + K ++P ++
Sbjct: 384 VGDSTVVGTSRLRDLYDKFEEELGSRQEKAKAARPPWE 421
Score = 38 (18.4 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 20/80 (25%), Positives = 33/80 (41%)
Query: 621 SETNDIYPDAVHFGSRPLQLCFAG--SPDFQKLWKGYVKLRHLVANKPKRTAEDKR-RLA 677
S +N P H PL + SP+ K + + H + + D+R R
Sbjct: 186 SASNSSSPHFRHLPPYPLPKAPSERRSPERLKHYDDHRHRDHSHGRGERHRSLDRRERGR 245
Query: 678 AKEQRLQEMRTNSKMKRGVT 697
+ ++R Q+ R S +RG T
Sbjct: 246 SPDRRRQDGRYRSDYERGRT 265
>UNIPROTKB|Q9NRR4 [details] [associations]
symbol:DROSHA "Ribonuclease 3" species:9606 "Homo sapiens"
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0010586 "miRNA metabolic process" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_71 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0010467 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0042254
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
BRENDA:3.1.26.3 PANTHER:PTHR11207 KO:K03685 EMBL:AF189011
EMBL:AC008768 EMBL:AC022417 EMBL:AC106802 EMBL:AJ242976
EMBL:AK001121 EMBL:BC041162 EMBL:BC054003 EMBL:AF116910
IPI:IPI00219990 IPI:IPI00300956 IPI:IPI00942044 RefSeq:NP_037367.3
UniGene:Hs.97997 PDB:2KHX PDBsum:2KHX ProteinModelPortal:Q9NRR4
SMR:Q9NRR4 DIP:DIP-33300N IntAct:Q9NRR4 MINT:MINT-1184869
STRING:Q9NRR4 PhosphoSite:Q9NRR4 DMDM:20139357 PaxDb:Q9NRR4
PRIDE:Q9NRR4 Ensembl:ENST00000344624 Ensembl:ENST00000511367
GeneID:29102 KEGG:hsa:29102 UCSC:uc003jhg.2 CTD:29102
GeneCards:GC05M031401 H-InvDB:HIX0004780 HGNC:HGNC:17904 MIM:608828
neXtProt:NX_Q9NRR4 PharmGKB:PA142671060 HOGENOM:HOG000122291
HOVERGEN:HBG023130 InParanoid:Q9NRR4 OMA:SGKEKNY OrthoDB:EOG4VQ9NG
ChiTaRS:DROSHA EvolutionaryTrace:Q9NRR4 GenomeRNAi:29102
NextBio:52141 ArrayExpress:Q9NRR4 Bgee:Q9NRR4 CleanEx:HS_RNASEN
Genevestigator:Q9NRR4 GermOnline:ENSG00000113360 Uniprot:Q9NRR4
Length = 1374
Score = 2077 (736.2 bits), Expect = 8.6e-219, Sum P(2) = 8.6e-219
Identities = 381/658 (57%), Positives = 504/658 (76%)
Query: 370 ELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTN 429
E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+ C P TN
Sbjct: 507 EIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTN 566
Query: 430 NADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQ 489
NA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL +P CKVIRFNI
Sbjct: 567 NAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNID 626
Query: 490 YTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPRFV 546
YTI +IEE +P F VK ELF +LF +ILEL D +LK +D CP+FH MPRFV
Sbjct: 627 YTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPRFV 686
Query: 547 RELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPG 606
R L D GKE+L M+++L + ++ E+ + EWQ +A+ KGMI+ PG
Sbjct: 687 RFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPG 746
Query: 607 SKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVAN 664
+KP ++R+DQLDRE D+ +P VHFG RP QL +AG P +QKLWK YVKLRHL+AN
Sbjct: 747 TKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLAN 806
Query: 665 KPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVL 724
PK DK++LA +E+ LQ++R + M+R VTV +SS+GF++TGI D+ QHAM++PVL
Sbjct: 807 SPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVL 866
Query: 725 ICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPE 784
H+R+H+ L L+ I Y FQ+R LLQLA+THPS+ NFG NPDHARNSLSNCG+RQP+
Sbjct: 867 THHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPK 926
Query: 785 YGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFH 844
YGDR++H + RK+GINTLINIMS+LG+ T S I HNERLEFLGDAVVEF+TS+HL++
Sbjct: 927 YGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYY 986
Query: 845 VFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEA 904
+FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEA
Sbjct: 987 LFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEA 1046
Query: 905 LMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLK 964
L+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L+
Sbjct: 1047 LIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQ 1105
Query: 965 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
+L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1163
Score = 151 (58.2 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 34/108 (31%), Positives = 65/108 (60%)
Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
HN+R+EFLGD++++ + + +LF FPD EG L R+++V N+ A +A+ +G+++
Sbjct: 1142 HNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE--- 1198
Query: 882 YAHGSDLCHE-VELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
YA +D V L+ +A+ E+ + AL++D ++ F +V +
Sbjct: 1199 YAITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYV-HTFMNVCF 1245
Score = 59 (25.8 bits), Expect = 8.6e-219, Sum P(2) = 8.6e-219
Identities = 23/98 (23%), Positives = 43/98 (43%)
Query: 230 DKWRMNNCSS-EREMT---EKFNTLAAMEADQIIEEE--KKIWTRSAPADLYYTK----R 279
D+W N S ++ T EK + ++ EEE K +W R ++ YY+ +
Sbjct: 370 DRWSDNQSSGKDKNYTSIKEKEPEETMPDKNEEEEEELLKPVWIRCTHSENYYSSDPMDQ 429
Query: 280 TEDDSYECTQKTRTICDEFESVI-QNFVSVKESKPQFD 316
D + T + R + D+FE + K ++P ++
Sbjct: 430 VGDSTVVGTSRLRDLYDKFEEELGSRQEKAKAARPPWE 467
Score = 38 (18.4 bits), Expect = 1.4e-216, Sum P(2) = 1.4e-216
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 260 EEEKKIWT--RSAPADLYYTKRTEDDSYE 286
EEEK W+ +S+ D YT E + E
Sbjct: 366 EEEKDRWSDNQSSGKDKNYTSIKEKEPEE 394
>UNIPROTKB|E9PTR3 [details] [associations]
symbol:E9PTR3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 KO:K03685 CTD:29102 IPI:IPI00559397
RefSeq:NP_001101125.2 RefSeq:XP_003749268.1 UniGene:Rn.41113
Ensembl:ENSRNOT00000048026 GeneID:310159 KEGG:rno:310159
ArrayExpress:E9PTR3 Uniprot:E9PTR3
Length = 1373
Score = 2071 (734.1 bits), Expect = 1.1e-218, Sum P(2) = 1.1e-218
Identities = 380/658 (57%), Positives = 504/658 (76%)
Query: 370 ELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTN 429
E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+ C P TN
Sbjct: 506 EIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTN 565
Query: 430 NADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQ 489
NA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL +P CKVIRFNI
Sbjct: 566 NAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNID 625
Query: 490 YTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPRFV 546
YTI +IEE +P F VK ELF +LF +ILEL D +LK +D CP+FH MPRFV
Sbjct: 626 YTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPRFV 685
Query: 547 RELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPG 606
R L D GKE+L M+++L + ++ E+ + EWQ +A+ KGMI+ PG
Sbjct: 686 RFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPG 745
Query: 607 SKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVAN 664
+KP ++R+DQLDRE ++ +P VHFG RP QL +AG P +QKLWK YVKLRHL+AN
Sbjct: 746 TKPSSVRIDQLDREQFNPEVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLAN 805
Query: 665 KPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVL 724
PK DK++LA +E+ LQ++R + M+R VTV +SS+GF++TGI D+ QHAM++PVL
Sbjct: 806 SPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVL 865
Query: 725 ICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPE 784
H+R+H+ L L+ I Y FQ+R LLQLA+THPS+ NFG NPDHARNSLSNCG+RQP+
Sbjct: 866 THHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPK 925
Query: 785 YGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFH 844
YGDR++H + RK+GINTLINIMS+LG+ T S I HNERLEFLGDAVVEF+TS+HL++
Sbjct: 926 YGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYY 985
Query: 845 VFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEA 904
+FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEA
Sbjct: 986 LFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEA 1045
Query: 905 LMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLK 964
L+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L+
Sbjct: 1046 LIGAVYLEGTLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQ 1104
Query: 965 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
+L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1105 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1162
Score = 151 (58.2 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 34/108 (31%), Positives = 65/108 (60%)
Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
HN+R+EFLGD++++ + + +LF FPD EG L R+++V N+ A +A+ +G+++
Sbjct: 1141 HNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE--- 1197
Query: 882 YAHGSDLCHE-VELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
YA +D V L+ +A+ E+ + AL++D ++ F +V +
Sbjct: 1198 YAITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYV-HTFMNVCF 1244
Score = 64 (27.6 bits), Expect = 1.1e-218, Sum P(2) = 1.1e-218
Identities = 25/98 (25%), Positives = 44/98 (44%)
Query: 230 DKWRMNNCSS-EREMT---EKFNTLAAMEADQIIEEE--KKIWTRSAPADLYYTK----R 279
D+W + S E+ T EK A E + +EE K +W R ++ YY+ +
Sbjct: 369 DRWSDSQSSGKEKSYTSIKEKEPEEAPPEKTEEEDEELLKPVWIRCTHSESYYSSDPMDQ 428
Query: 280 TEDDSYECTQKTRTICDEFESVIQNFVS-VKESKPQFD 316
D + T + R + D+FE + N K ++P ++
Sbjct: 429 VGDSTVVGTSRLRDLYDKFEEELGNRQEKAKAARPPWE 466
Score = 45 (20.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 668 RTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRT 708
R+ E + R + E+R E R S+ RG T R + R+
Sbjct: 243 RSLERRERGRSPERRRPESRYRSEYDRGRTPPPRHRSYERS 283
Score = 39 (18.8 bits), Expect = 4.9e-216, Sum P(2) = 4.9e-216
Identities = 18/72 (25%), Positives = 29/72 (40%)
Query: 223 GEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWT--RSAPADLYYTKRT 280
GE + N D W + + + + A EEEK W+ +S+ + YT
Sbjct: 334 GEIIKNTDSW----APPQENVNHRSPSREKKRARW--EEEKDRWSDSQSSGKEKSYTSIK 387
Query: 281 EDDSYECT-QKT 291
E + E +KT
Sbjct: 388 EKEPEEAPPEKT 399
>UNIPROTKB|F1NQC9 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0010586
"miRNA metabolic process" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:AADN02007047
IPI:IPI00583351 Ensembl:ENSGALT00000021065 Uniprot:F1NQC9
Length = 1336
Score = 2067 (732.7 bits), Expect = 9.9e-218, Sum P(2) = 9.9e-218
Identities = 380/658 (57%), Positives = 499/658 (75%)
Query: 370 ELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTN 429
E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH IY GE+ C P TN
Sbjct: 469 EIKRKKAHPDRLHEELWYNDPGQMNDGPLCKCSAKARRTGIRHGIYPGEEPIKPCRPMTN 528
Query: 430 NADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQ 489
NA +LYHYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+FSH PL +P CKVIRFNI
Sbjct: 529 NAGRLYHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFSHAPLTNIPLCKVIRFNID 588
Query: 490 YTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSA---NNKDGCPQFHIMPRFV 546
YTI +IEE +P F VK ELF +YLF +ILEL D LK N+ CP+FH MPRFV
Sbjct: 589 YTIHFIEEMMPENFCVKGLELFSSYLFKDILELYDWHLKGPSVENDSVSCPRFHFMPRFV 648
Query: 547 RELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPG 606
R L D GKE+L M+++L + ++ E+ + EWQ +A+ KGMI+ PG
Sbjct: 649 RFLPDGGKEVLSMHQILLYLLRCNKALVPEEEIANMLQWEELEWQKYAEECKGMIVTSPG 708
Query: 607 SKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVAN 664
KP ++R+DQLDRE D+ +P VHFG RP QL +AG P +QKLWK YVKLRHL+AN
Sbjct: 709 MKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLAN 768
Query: 665 KPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVL 724
PK DK++L+ +E+ LQ++R + M+R VTV +SS+GF++TGI D+ QHAM++PVL
Sbjct: 769 SPKVKQADKQKLSQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVL 828
Query: 725 ICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPE 784
H+R+H+ L L+ I Y F++R LLQLA+THPS+ NFG NPDHARNSLSNCG+RQP+
Sbjct: 829 THHIRYHQCLMHLDKLIGYTFRDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPK 888
Query: 785 YGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFH 844
YGDR++H + RK+GINTLINIMS+LG+ S I HNERLEFLGDAVVEF+TS+HL++
Sbjct: 889 YGDRKVHHMHMRKKGINTLINIMSRLGQDDPAPSRINHNERLEFLGDAVVEFLTSVHLYY 948
Query: 845 VFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEA 904
+FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEA
Sbjct: 949 LFPTLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEA 1008
Query: 905 LMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLK 964
L+GA++L+G ++ A Q+F +L+ D ++R W+ YP HPLQ QE + DRQ +E SP+L+
Sbjct: 1009 LIGAVYLEGSLEEAKQLFGRLLFNDKDLR-DVWLNYPLHPLQLQESNTDRQLIETSPVLQ 1067
Query: 965 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
+L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1068 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1125
Score = 152 (58.6 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 31/106 (29%), Positives = 63/106 (59%)
Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
HN+R+EFLGD++++ + + +LF FPD EG L R+++V N+ A +A+ +G+++F +
Sbjct: 1104 HNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFAI 1163
Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
+ + K +A+ E+ + AL++D ++ F +V +
Sbjct: 1164 TNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEYV-HTFMNVCF 1207
Score = 59 (25.8 bits), Expect = 9.9e-218, Sum P(2) = 9.9e-218
Identities = 20/98 (20%), Positives = 46/98 (46%)
Query: 230 DKW-RMNNCSSEREMT---EKFNTLAAMEADQIIEEE--KKIWTRSAPADLYYTK----R 279
++W + + E+ T +K + A E ++ ++E K +W R ++ YY+ +
Sbjct: 332 ERWSESQSANKEKNYTSIKDKESEENASEKNEDEDDELLKPVWVRCTHSESYYSNDPMDQ 391
Query: 280 TEDDSYECTQKTRTICDEFESVI-QNFVSVKESKPQFD 316
D + T K R + ++FE + + K ++P ++
Sbjct: 392 VGDSTVVGTSKLRDLYEKFEEELGKRQAKAKAARPPWE 429
Score = 41 (19.5 bits), Expect = 7.9e-216, Sum P(2) = 7.9e-216
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 260 EEEKKIWTRSAPA--DLYYTKRTEDDSYE-CTQKTRTICDE 297
EEE++ W+ S A + YT + +S E ++K DE
Sbjct: 328 EEERERWSESQSANKEKNYTSIKDKESEENASEKNEDEDDE 368
>UNIPROTKB|F1LQY5 [details] [associations]
symbol:F1LQY5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0006396 GO:GO:0003725 GO:GO:0016075 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 IPI:IPI00870720
Ensembl:ENSRNOT00000018032 ArrayExpress:F1LQY5 Uniprot:F1LQY5
Length = 1018
Score = 2071 (734.1 bits), Expect = 1.3e-217, Sum P(2) = 1.3e-217
Identities = 380/658 (57%), Positives = 504/658 (76%)
Query: 370 ELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTN 429
E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+ C P TN
Sbjct: 151 EIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTN 210
Query: 430 NADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQ 489
NA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL +P CKVIRFNI
Sbjct: 211 NAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNID 270
Query: 490 YTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPRFV 546
YTI +IEE +P F VK ELF +LF +ILEL D +LK +D CP+FH MPRFV
Sbjct: 271 YTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPRFV 330
Query: 547 RELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPG 606
R L D GKE+L M+++L + ++ E+ + EWQ +A+ KGMI+ PG
Sbjct: 331 RFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPG 390
Query: 607 SKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVAN 664
+KP ++R+DQLDRE ++ +P VHFG RP QL +AG P +QKLWK YVKLRHL+AN
Sbjct: 391 TKPSSVRIDQLDREQFNPEVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLAN 450
Query: 665 KPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVL 724
PK DK++LA +E+ LQ++R + M+R VTV +SS+GF++TGI D+ QHAM++PVL
Sbjct: 451 SPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVL 510
Query: 725 ICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPE 784
H+R+H+ L L+ I Y FQ+R LLQLA+THPS+ NFG NPDHARNSLSNCG+RQP+
Sbjct: 511 THHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPK 570
Query: 785 YGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFH 844
YGDR++H + RK+GINTLINIMS+LG+ T S I HNERLEFLGDAVVEF+TS+HL++
Sbjct: 571 YGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYY 630
Query: 845 VFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEA 904
+FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEA
Sbjct: 631 LFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEA 690
Query: 905 LMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLK 964
L+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L+
Sbjct: 691 LIGAVYLEGTLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQ 749
Query: 965 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
+L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 750 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 807
Score = 151 (58.2 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 34/108 (31%), Positives = 65/108 (60%)
Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
HN+R+EFLGD++++ + + +LF FPD EG L R+++V N+ A +A+ +G+++
Sbjct: 786 HNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE--- 842
Query: 882 YAHGSDLCHE-VELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
YA +D V L+ +A+ E+ + AL++D ++ F +V +
Sbjct: 843 YAITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYV-HTFMNVCF 889
Score = 54 (24.1 bits), Expect = 1.3e-217, Sum P(2) = 1.3e-217
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 263 KKIWTRSAPADLYYTK----RTEDDSYECTQKTRTICDEFESVIQNFVS-VKESKPQFD 316
K +W R ++ YY+ + D + T + R + D+FE + N K ++P ++
Sbjct: 53 KPVWIRCTHSESYYSSDPMDQVGDSTVVGTSRLRDLYDKFEEELGNRQEKAKAARPPWE 111
>UNIPROTKB|E1BGY0 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:DAAA02050706
IPI:IPI00718255 Ensembl:ENSBTAT00000023346 Uniprot:E1BGY0
Length = 1368
Score = 2065 (732.0 bits), Expect = 5.4e-217, Sum P(2) = 5.4e-217
Identities = 381/660 (57%), Positives = 504/660 (76%)
Query: 370 ELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTN 429
E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+ C P TN
Sbjct: 499 EIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTN 558
Query: 430 NADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQ 489
NA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL +P CKVIRFNI
Sbjct: 559 NAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNID 618
Query: 490 YTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIMPRFV 546
YTI +IEE +P F VK ELF +LF +ILEL D +LK +D CP+FH MPRFV
Sbjct: 619 YTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPRFV 678
Query: 547 RELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPG 606
R L D GKE+L M+++L + ++ E+ + EWQ +A+ KGMI+ PG
Sbjct: 679 RFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPG 738
Query: 607 SKPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVAN 664
+KP ++R+DQLDRE D+ +P VHFG RP QL +AG P +QKLWK YVKLRHL+AN
Sbjct: 739 AKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLAN 798
Query: 665 KPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVL 724
PK DK++LA +E+ LQ++R + M+R VTV +SS+GF++TGI D+ QHAM++PVL
Sbjct: 799 SPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVL 858
Query: 725 ICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPE 784
H+R+H+ L L+ I Y FQ+R LLQLA+THPS+ NFG NPDHARNSLSNCG+RQP+
Sbjct: 859 THHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPK 918
Query: 785 YGDRRIHFQNTRKR--GINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHL 842
YGDR++H + RK+ GINTLINIMS+LG+ T S I HNERLEFLGDAVVEF+TS+HL
Sbjct: 919 YGDRKVHHMHMRKKEIGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHL 978
Query: 843 FHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCF 902
+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCF
Sbjct: 979 YYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCF 1038
Query: 903 EALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPL 962
EAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+
Sbjct: 1039 EALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPV 1097
Query: 963 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1098 LQKLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1157
Score = 151 (58.2 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 34/108 (31%), Positives = 65/108 (60%)
Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
HN+R+EFLGD++++ + + +LF FPD EG L R+++V N+ A +A+ +G+++
Sbjct: 1136 HNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE--- 1192
Query: 882 YAHGSDLCHE-VELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
YA +D V L+ +A+ E+ + AL++D ++ F +V +
Sbjct: 1193 YAITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYV-HTFMNVCF 1239
Score = 54 (24.1 bits), Expect = 5.4e-217, Sum P(2) = 5.4e-217
Identities = 22/98 (22%), Positives = 42/98 (42%)
Query: 230 DKWR-MNNCSSEREMT---EKFNTLAAMEADQIIEEE--KKIWTRSAPADLYYTK----R 279
D+W + E+ T EK + ++ EEE K +W R ++ YY+ +
Sbjct: 362 DRWSDIPGSGKEKNYTSIKEKEPEEGLPDKNEEEEEELLKPVWIRCTHSENYYSSDPMDQ 421
Query: 280 TEDDSYECTQKTRTICDEFESVI-QNFVSVKESKPQFD 316
D + T + R + D+FE + K ++P ++
Sbjct: 422 VGDSTVVGTSRLRDLYDKFEEELGSRQEKAKAARPPWE 459
Score = 41 (19.5 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 27/132 (20%), Positives = 51/132 (38%)
Query: 668 RTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICH 727
R+ E + R + ++R Q+ R S +RG T + R + R+ + +H H
Sbjct: 243 RSLERRERGRSPDRRRQDSRYRSDHERGRTPS-RHRSYERSRER-ERERHR--------H 292
Query: 728 LRFHRSLNVLED-RIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYG 786
RS ++ + +YK R+ A P + + P + N R P
Sbjct: 293 RDSRRSPSLERSYKKEYKRSGRFCA-FAGCQPGLQNSLSVCPKNTVKRAENVNSRSPSRE 351
Query: 787 DRRIHFQNTRKR 798
+R ++ + R
Sbjct: 352 KKRGRWEEEKDR 363
>ZFIN|ZDB-GENE-070209-23 [details] [associations]
symbol:rnasen "ribonuclease type III, nuclear"
species:7955 "Danio rerio" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 ZFIN:ZDB-GENE-070209-23
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 OMA:SGKEKNY
EMBL:BX571950 IPI:IPI00499713 Ensembl:ENSDART00000089017
ArrayExpress:F1QKS5 Bgee:F1QKS5 Uniprot:F1QKS5
Length = 1289
Score = 2072 (734.4 bits), Expect = 2.0e-214, P = 2.0e-214
Identities = 406/806 (50%), Positives = 544/806 (67%)
Query: 227 SNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEE-EKKIWTRSAPADLYYTK----RTE 281
S+ + R N S RE E T+ E D+ EE K W R A+ YY+ +
Sbjct: 293 SSSSRERSVNSSRSREAEEI--TIDRHEEDRGQEELHKPAWIRCTHAENYYSNDPMDQVG 350
Query: 282 DDSYECTQKTRTICDEFESVI-QNFVSVKESKPQFDYTAXXXXXXXXXXXXXXXXCSHCA 340
D + T K R + + FE + + K +P+++ S C
Sbjct: 351 DSTVVGTSKLRDLYERFEEELGKRQERAKSIRPKWEPPKTKLDQDQDESSSE----SECE 406
Query: 341 SNPTVXXXXXXXXXXXXXXXXXXXXNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCR 400
S+ + + E++ K+ HPDRLH ELW+ND G+MNDGPLC+
Sbjct: 407 SD--------GGGSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCK 458
Query: 401 CSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQ 460
CS+K+RR+GIRH+IY GE C P NNA KL+HYR+TVSPPTNFL ++PTVIE+D+
Sbjct: 459 CSAKARRTGIRHSIYPGEQPVKQCRPMNNNAGKLFHYRITVSPPTNFLTDRPTVIEYDDH 518
Query: 461 EFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEIL 520
E++FEGFS FSH PL +P C+VIRFNI YTI +IEE P + VK ELF +YLF +IL
Sbjct: 519 EYLFEGFSCFSHTPLTSIPLCRVIRFNIDYTIHFIEEMAPENYCVKGLELFSSYLFKDIL 578
Query: 521 ELVDLDLKSA--NNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKL 578
EL D +L N+ GC +FH MPRFVR L D GKE+L M++VL + S P++ E+
Sbjct: 579 ELYDWNLTDPEENSPLGCQRFHFMPRFVRFLPDGGKEVLSMHQVLLYLLHSSKPLVPEEE 638
Query: 579 AKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDAVHFGSR 636
+ EWQ +A+ KGMI+ PG KP ++R+DQLDRE + + +P VHFG R
Sbjct: 639 IANMLQWEELEWQKYAEECKGMIVTNPGMKPSSVRIDQLDREQFNSSVITFPIIVHFGIR 698
Query: 637 PLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGV 696
P QL +AG P +QKLWK YVKLRHL+AN PK DK++L +E+ LQ++R + M+R V
Sbjct: 699 PAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQIDKQKLMQREEALQKIRQKNTMRREV 758
Query: 697 TVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALT 756
TV +SS+GF++TGI D+ QHAM++PVL H+R+H+ L L+ I Y F+ R LLQLA+T
Sbjct: 759 TVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYMFKERCLLQLAMT 818
Query: 757 HPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVAT 816
HPS+ NFG NPDHARNSLSNCG+RQP+YGDR++H RK+GINTLINIMS+LG+ +
Sbjct: 819 HPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMYMRKKGINTLINIMSRLGQDDPS 878
Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
S I HNERLEFLGDAVVEF+TS+HL+H+FP +EEGGLATYR AIVQNQHLA LAK++ L
Sbjct: 879 PSRINHNERLEFLGDAVVEFLTSVHLYHLFPSLEEGGLATYRTAIVQNQHLAMLAKKLEL 938
Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQ 936
+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+GG++ A +F +L+ ++R +
Sbjct: 939 DRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGGLEEAKDLFGRLLFNTEDMR-EV 997
Query: 937 WMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN 996
W+ YP HPLQ QEP DRQ +E SP+L++L E + GV+F H+RLLAR FT R++G+ +
Sbjct: 998 WLNYPPHPLQVQEPLTDRQLIESSPVLQKLTNFEDAIGVLFTHVRLLARAFTLRTVGFNH 1057
Query: 997 LTLGSNQRLEFLGDTVLQLITSDYLY 1022
LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1058 LTLGHNQRMEFLGDSIMQLVATEYLF 1083
Score = 152 (58.6 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 31/106 (29%), Positives = 63/106 (59%)
Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
HN+R+EFLGD++++ + + +LF FPD EG L R+++V N+ A +A+ +G+++F +
Sbjct: 1062 HNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFAI 1121
Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
+ + K +A+ E+ + AL++D ++ F +V +
Sbjct: 1122 TNDKTKRPVALRTK-TLADLLESFIAALYIDKDLEFV-HTFMNVCF 1165
Score = 49 (22.3 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 757 HPSYRENFGTNPDHARNSLSNCGVRQPEY 785
HP + P A N+L C +R P +
Sbjct: 52 HPDFMSFHFPPPSQASNTLPQCPIRPPVF 80
Score = 39 (18.8 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 665 KPKRTAEDKRRLAAKEQRLQEMRTNSKMKR 694
K +R EDK R +E NS R
Sbjct: 278 KRRRVEEDKERRTDGSSSSRERSVNSSRSR 307
>UNIPROTKB|F1PJL5 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 EMBL:AAEX03003196
Ensembl:ENSCAFT00000030086 OMA:TSICAFD Uniprot:F1PJL5
Length = 627
Score = 1364 (485.2 bits), Expect = 2.1e-139, P = 2.1e-139
Identities = 250/417 (59%), Positives = 331/417 (79%)
Query: 608 KPCAMRVDQLDRESETNDI--YPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANK 665
KP ++R+DQLDRE D+ +P VHFG RP QL +AG P +QKLWK YVKLRHL+AN
Sbjct: 1 KPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANS 60
Query: 666 PKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLI 725
PK DK++LA +E+ LQ++R + M+R VTV +SS+GF++TGI D+ QHAM++PVL
Sbjct: 61 PKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLT 120
Query: 726 CHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEY 785
H+R+H+ L L+ I Y FQ+R LLQLA+THPS+ NFG NPDHARNSLSNCG+RQP+Y
Sbjct: 121 HHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKY 180
Query: 786 GDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHV 845
GDR++H + RK+GINTLINIMS+LG+ T S I HNERLEFLGDAVVEF+TS+HL+++
Sbjct: 181 GDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYL 240
Query: 846 FPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEAL 905
FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEAL
Sbjct: 241 FPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEAL 300
Query: 906 MGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQ 965
+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L++
Sbjct: 301 IGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQK 359
Query: 966 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 360 LTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 416
Score = 151 (58.2 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 34/108 (31%), Positives = 65/108 (60%)
Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
HN+R+EFLGD++++ + + +LF FPD EG L R+++V N+ A +A+ +G+++
Sbjct: 395 HNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE--- 451
Query: 882 YAHGSDLCHE-VELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
YA +D V L+ +A+ E+ + AL++D ++ F +V +
Sbjct: 452 YAITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYV-HTFMNVCF 498
>WB|WBGene00009163 [details] [associations]
symbol:drsh-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0000910 "cytokinesis" evidence=IMP] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005634 GO:GO:0009792
GO:GO:0030154 GO:GO:0007052 GO:GO:0046872 Gene3D:3.30.160.20
GO:GO:0007506 GO:GO:0000910 GO:GO:0003725 GO:GO:0016075
GO:GO:0019953 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 GO:GO:0031053 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 EMBL:Z81070 HOGENOM:HOG000154167
EMBL:AF160248 PIR:T21420 RefSeq:NP_001122460.2 RefSeq:NP_492599.1
ProteinModelPortal:O01326 SMR:O01326 STRING:O01326 PaxDb:O01326
EnsemblMetazoa:F26E4.10a GeneID:172830 KEGG:cel:CELE_F26E4.10
UCSC:F26E4.10a CTD:172830 WormBase:F26E4.10a WormBase:F26E4.10b
InParanoid:O01326 OMA:RFHKSLD NextBio:877175 Uniprot:O01326
Length = 1086
Score = 1093 (389.8 bits), Expect = 1.1e-110, P = 1.1e-110
Identities = 247/660 (37%), Positives = 377/660 (57%)
Query: 374 KQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADK 433
K+ HP+ +HP++ FN+KG N+GP CRC + G++H YAGED+ C +N +
Sbjct: 250 KKTHPNGIHPDISFNEKGLGNEGPECRCPEPIKTCGLKHGYYAGEDKAIDCKK--SNGEN 307
Query: 434 LYHY--RVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPT-CKVIRFNIQY 490
L++Y RVT P N L I + +EF FEGFSL +H PL T + ++++ Y
Sbjct: 308 LHYYTLRVTPLPSENQLYRTHMAI--NGEEFEFEGFSLITHAPLPDCMTRAPICKYSMDY 365
Query: 491 TIVYIEEKVPNG-FTVKDTELFFNYLFHEILELVDLDLKSAN---NKDGCPQFHIMPRFV 546
+EE +P+ F +D ++ F Y+FHEI E++D +L+ + + + CP HIMPRFV
Sbjct: 366 EFQLVEEFMPDECFDPEDCDMLFEYIFHEIFEMLDFELRPKHIPSDVESCPMIHIMPRFV 425
Query: 547 RELKDNGKELLPMYRVLEFFTSS-FVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKP 605
+ KD+ +L VL +FTS ++S + D ++ K I++
Sbjct: 426 -QTKDDLVQLWSSKTVLAYFTSKGSSEIMSPEDVNRLCDAQIDQFTRNTSKHKQSIVLNT 484
Query: 606 GSKPCAMRVDQLDRESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANK 665
KP A+R D +R+ E ++Y VH R P L K L ++ K
Sbjct: 485 KFKPSAIRADWFERDEEKKEVY--VVHNAIRAQTYTAISLPRIAFLEK---TLNKMIQEK 539
Query: 666 PKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLI 725
+K K + L+ ++ ++ R + + GF TG+ D+ H ++ +L
Sbjct: 540 QSSGVYNKDFEKTKNE-LEHLKRENRSARNLKLREPVAGFIETGLKPDVAAHVVMT-ILA 597
Query: 726 CH-LRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPE 784
CH +R++ SL+V E+ I+YKF +R +++LAL H S++ ++GT DH +N ++NCG R+ +
Sbjct: 598 CHHIRYNFSLDVFEEVIEYKFNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRR-K 656
Query: 785 YG--DRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHL 842
YG D+R + R GI +L NIM + + I HNERLE+LGDAVVE I S HL
Sbjct: 657 YGAEDKR---EKKRVAGIMSLFNIM----KGTSGGEPILHNERLEYLGDAVVELIVSHHL 709
Query: 843 FHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCF 902
+ + EGGLATYR A+VQN++LA LAK +++ + Y+HG+DL + E KHA+AN F
Sbjct: 710 YFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQYSHGADLINVAEFKHALANAF 769
Query: 903 EALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPL 962
EA+M A++LDGG+ D +FS +Y V ++W + +H L+ ++P GDR +P
Sbjct: 770 EAVMAAIYLDGGLAPCDVIFSKAMYGHQPVLKEKWDHINEHELKREDPQGDRDLSFITPT 829
Query: 963 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
L LE G+ FN+IRLLA+ FT R++ +LT G NQRLE+LGD+VLQLI SD+LY
Sbjct: 830 LSTFHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLY 889
Score = 154 (59.3 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 40/116 (34%), Positives = 69/116 (59%)
Query: 804 INIMSK-LGRKVATESNIT--HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAA 860
I +++K R+ +++T HN+RLE+LGD+V++ I S L+ FP EG ++ R +
Sbjct: 847 IRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRFPYHHEGHMSLLRTS 906
Query: 861 IVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
+V NQ A + +G +F++ A E++LK A+ EA +GAL++D GI+
Sbjct: 907 LVSNQTQAVVCDDLGFTEFVIKAPYKT--PELKLKDK-ADLVEAFIGALYVDRGIE 959
>UNIPROTKB|O01326 [details] [associations]
symbol:drsh-1 "Ribonuclease 3" species:6239 "Caenorhabditis
elegans" [GO:0005634 "nucleus" evidence=IC] [GO:0031053 "primary
miRNA processing" evidence=IMP] [GO:0019953 "sexual reproduction"
evidence=IMP] [GO:0004525 "ribonuclease III activity" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005634 GO:GO:0009792 GO:GO:0030154 GO:GO:0007052
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0007506 GO:GO:0000910
GO:GO:0003725 GO:GO:0016075 GO:GO:0019953 GO:GO:0006364
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
GO:GO:0031053 PANTHER:PTHR11207 GeneTree:ENSGT00690000102147
EMBL:Z81070 HOGENOM:HOG000154167 EMBL:AF160248 PIR:T21420
RefSeq:NP_001122460.2 RefSeq:NP_492599.1 ProteinModelPortal:O01326
SMR:O01326 STRING:O01326 PaxDb:O01326 EnsemblMetazoa:F26E4.10a
GeneID:172830 KEGG:cel:CELE_F26E4.10 UCSC:F26E4.10a CTD:172830
WormBase:F26E4.10a WormBase:F26E4.10b InParanoid:O01326 OMA:RFHKSLD
NextBio:877175 Uniprot:O01326
Length = 1086
Score = 1093 (389.8 bits), Expect = 1.1e-110, P = 1.1e-110
Identities = 247/660 (37%), Positives = 377/660 (57%)
Query: 374 KQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADK 433
K+ HP+ +HP++ FN+KG N+GP CRC + G++H YAGED+ C +N +
Sbjct: 250 KKTHPNGIHPDISFNEKGLGNEGPECRCPEPIKTCGLKHGYYAGEDKAIDCKK--SNGEN 307
Query: 434 LYHY--RVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPT-CKVIRFNIQY 490
L++Y RVT P N L I + +EF FEGFSL +H PL T + ++++ Y
Sbjct: 308 LHYYTLRVTPLPSENQLYRTHMAI--NGEEFEFEGFSLITHAPLPDCMTRAPICKYSMDY 365
Query: 491 TIVYIEEKVPNG-FTVKDTELFFNYLFHEILELVDLDLKSAN---NKDGCPQFHIMPRFV 546
+EE +P+ F +D ++ F Y+FHEI E++D +L+ + + + CP HIMPRFV
Sbjct: 366 EFQLVEEFMPDECFDPEDCDMLFEYIFHEIFEMLDFELRPKHIPSDVESCPMIHIMPRFV 425
Query: 547 RELKDNGKELLPMYRVLEFFTSS-FVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKP 605
+ KD+ +L VL +FTS ++S + D ++ K I++
Sbjct: 426 -QTKDDLVQLWSSKTVLAYFTSKGSSEIMSPEDVNRLCDAQIDQFTRNTSKHKQSIVLNT 484
Query: 606 GSKPCAMRVDQLDRESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANK 665
KP A+R D +R+ E ++Y VH R P L K L ++ K
Sbjct: 485 KFKPSAIRADWFERDEEKKEVY--VVHNAIRAQTYTAISLPRIAFLEK---TLNKMIQEK 539
Query: 666 PKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLI 725
+K K + L+ ++ ++ R + + GF TG+ D+ H ++ +L
Sbjct: 540 QSSGVYNKDFEKTKNE-LEHLKRENRSARNLKLREPVAGFIETGLKPDVAAHVVMT-ILA 597
Query: 726 CH-LRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPE 784
CH +R++ SL+V E+ I+YKF +R +++LAL H S++ ++GT DH +N ++NCG R+ +
Sbjct: 598 CHHIRYNFSLDVFEEVIEYKFNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRR-K 656
Query: 785 YG--DRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHL 842
YG D+R + R GI +L NIM + + I HNERLE+LGDAVVE I S HL
Sbjct: 657 YGAEDKR---EKKRVAGIMSLFNIM----KGTSGGEPILHNERLEYLGDAVVELIVSHHL 709
Query: 843 FHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCF 902
+ + EGGLATYR A+VQN++LA LAK +++ + Y+HG+DL + E KHA+AN F
Sbjct: 710 YFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQYSHGADLINVAEFKHALANAF 769
Query: 903 EALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPL 962
EA+M A++LDGG+ D +FS +Y V ++W + +H L+ ++P GDR +P
Sbjct: 770 EAVMAAIYLDGGLAPCDVIFSKAMYGHQPVLKEKWDHINEHELKREDPQGDRDLSFITPT 829
Query: 963 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
L LE G+ FN+IRLLA+ FT R++ +LT G NQRLE+LGD+VLQLI SD+LY
Sbjct: 830 LSTFHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLY 889
Score = 154 (59.3 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 40/116 (34%), Positives = 69/116 (59%)
Query: 804 INIMSK-LGRKVATESNIT--HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAA 860
I +++K R+ +++T HN+RLE+LGD+V++ I S L+ FP EG ++ R +
Sbjct: 847 IRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRFPYHHEGHMSLLRTS 906
Query: 861 IVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
+V NQ A + +G +F++ A E++LK A+ EA +GAL++D GI+
Sbjct: 907 LVSNQTQAVVCDDLGFTEFVIKAPYKT--PELKLKDK-ADLVEAFIGALYVDRGIE 959
>UNIPROTKB|Q61XX9 [details] [associations]
symbol:drsh-1 "Ribonuclease 3" species:6238 "Caenorhabditis
briggsae" [GO:0004525 "ribonuclease III activity" evidence=ISS]
[GO:0019953 "sexual reproduction" evidence=ISS] [GO:0031053
"primary miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005634 GO:GO:0030154
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0007506 GO:GO:0003725
GO:GO:0016075 GO:GO:0019953 GO:GO:0006364 EMBL:HE600906
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
GO:GO:0031053 PANTHER:PTHR11207 KO:K03685 RefSeq:XP_002639240.1
HSSP:O67082 ProteinModelPortal:Q61XX9 EnsemblMetazoa:CBG03798
GeneID:8581234 KEGG:cbr:CBG03798 CTD:8581234 WormBase:CBG03798
HOGENOM:HOG000154167 OMA:FNIMGGE Uniprot:Q61XX9
Length = 1061
Score = 1050 (374.7 bits), Expect = 4.0e-106, P = 4.0e-106
Identities = 246/662 (37%), Positives = 369/662 (55%)
Query: 369 MELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDT 428
M ++ K+NHP+ + P + +N+KG ND P CRC R G++H YAGE++ C+
Sbjct: 224 MGIERKRNHPNAIDPHISYNEKGLGNDSPECRCPFPIRNRGLKHGYYAGENQVLKCSK-- 281
Query: 429 NNADKLYHYRVTVSP-PTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCK-VIRF 486
N+ L++Y + V+P P I K ++ + E+ FEGF++ +H PL T + V ++
Sbjct: 282 NDRANLHYYTLHVTPAPNESQIQKTQMLIN-GMEYHFEGFTMVTHAPLPDCMTRRPVFKY 340
Query: 487 NIQYTIVYIEEKVPNG-FTVKDTELFFNYLFHEILELVDLDLKSANNKDG---CPQFHIM 542
+I Y IEE +P F +D F Y+FH+I EL+D DL + G CP HI+
Sbjct: 341 SIDYEFQLIEEFMPTECFDPEDCNSIFEYIFHDIFELLDFDLYPKHLPPGTASCPTIHIV 400
Query: 543 PRFVRELKDNGKELLPMYRVLEFFT-SSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMI 601
PRFV +++N + VL FF + S + + +S + +K I
Sbjct: 401 PRFVA-MENNTTFIWSSKTVLAFFLLHGKNNMFSPEDVEKNCAMSDDAFGRTIAKLKQSI 459
Query: 602 IVKPGSKPCAMRVDQLDRESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHL 661
++ P KP A+R D R+ E +++ + R P L K K+ L
Sbjct: 460 VLNPMKKPSALRADWFSRDLENKEMF--LIQNTIRSQNFASPFLPQIAALEK---KMSRL 514
Query: 662 VANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLI 721
K K + + L ++ + R + + + + + TG+ D+V H +
Sbjct: 515 KQEK-KDSGNKNPHYENLKAELIVLKDKHREARQLKLKLPVKDYIDTGLKPDVVAHVAMA 573
Query: 722 PVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVR 781
+ H+R++ SL+V E I+YKF +R +++LAL H S+R +GT PDH +N +SNCG R
Sbjct: 574 IIASHHIRYNFSLSVFEKVIEYKFNDRRIVELALIHSSFRSYYGTTPDHVKNMISNCGYR 633
Query: 782 QPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIH 841
+ +YG + +K+GI +L NIM G + + I HNERLE+LGDAVVE I S H
Sbjct: 634 K-KYGAEE---RREKKKGIISLFNIM---GGETSGGEPILHNERLEYLGDAVVELIASHH 686
Query: 842 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 901
LF + EGGLATYR A+VQN++LA LA +++ + +AHG+DL +E E KHA+AN
Sbjct: 687 LFFILNHHFEGGLATYRTALVQNRNLAKLAMNCRIDEMLQFAHGADLINEAEWKHALANA 746
Query: 902 FEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQS 960
FEALM +FLD GI D +FS +Y KD E++ K W + +H L+ ++P GDR +
Sbjct: 747 FEALMAGVFLDSGIAPCDAIFSKAMYGKDPEMK-KVWDHLNEHELKIEDPLGDRDLSRIT 805
Query: 961 PLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDY 1020
P L LE G+ FN+IRLLA+ FT R++ + +LT G NQRLE+LGD+VLQLI SDY
Sbjct: 806 PALTDFHRLEQIIGIEFNNIRLLAKAFTRRNVPFNDLTKGHNQRLEWLGDSVLQLIISDY 865
Query: 1021 LY 1022
LY
Sbjct: 866 LY 867
Score = 150 (57.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 37/117 (31%), Positives = 73/117 (62%)
Query: 804 INIMSK-LGRKVATESNIT--HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAA 860
I +++K R+ +++T HN+RLE+LGD+V++ I S +L+ FP EG ++ R +
Sbjct: 825 IRLLAKAFTRRNVPFNDLTKGHNQRLEWLGDSVLQLIISDYLYRNFPLHHEGHMSLLRTS 884
Query: 861 IVQNQHLAHLAKRIGLEDFMLYA-HGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
+V NQ + + +G ++F++ A H + ++++K A+ EA +GAL++D G++
Sbjct: 885 LVSNQTQSVVCDDLGFQEFVIKAPHRKN---DLKMKDK-ADLVEAFIGALYVDKGLE 937
>UNIPROTKB|J9NRX6 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR011907
GO:GO:0003723 GO:GO:0016075 GO:GO:0004525 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 EMBL:AAEX03003196
Ensembl:ENSCAFT00000045678 OMA:PHQGVAP Uniprot:J9NRX6
Length = 699
Score = 623 (224.4 bits), Expect = 3.8e-64, Sum P(2) = 3.8e-64
Identities = 113/183 (61%), Positives = 142/183 (77%)
Query: 370 ELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTN 429
E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+ C P TN
Sbjct: 506 EIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTN 565
Query: 430 NADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQ 489
NA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL +P CKVIRFNI
Sbjct: 566 NAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNID 625
Query: 490 YTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSA---NNKDGCPQFHIMPRFV 546
YTI +IEE +P F VK ELF +LF +ILEL D +LK +N CP+FH MPRFV
Sbjct: 626 YTIHFIEEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDNPPCCPRFHFMPRFV 685
Query: 547 REL 549
R L
Sbjct: 686 RFL 688
Score = 55 (24.4 bits), Expect = 3.8e-64, Sum P(2) = 3.8e-64
Identities = 22/98 (22%), Positives = 42/98 (42%)
Query: 230 DKWR-MNNCSSEREMT---EKFNTLAAMEADQIIEEE--KKIWTRSAPADLYYTK----R 279
D+W + E+ T EK + ++ EEE K +W R ++ YY+ +
Sbjct: 369 DRWSDSQSTGKEKNYTSIKEKEPEETLPDKNEEEEEELLKPVWIRCTHSENYYSSDPMDQ 428
Query: 280 TEDDSYECTQKTRTICDEFESVI-QNFVSVKESKPQFD 316
D + T + R + D+FE + K ++P ++
Sbjct: 429 VGDSTVVGTSRLRDLYDKFEEELGSRQEKAKAARPPWE 466
>UNIPROTKB|H7C5U6 [details] [associations]
symbol:DROSHA "Ribonuclease 3" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0016075 "rRNA catabolic process"
evidence=IEA] InterPro:IPR011907 GO:GO:0003723 GO:GO:0016075
GO:GO:0004525 PANTHER:PTHR11207 EMBL:AC008768 EMBL:AC022417
EMBL:AC106802 HGNC:HGNC:17904 ChiTaRS:DROSHA
Ensembl:ENST00000512076 Uniprot:H7C5U6
Length = 375
Score = 417 (151.9 bits), Expect = 1.6e-41, Sum P(2) = 1.6e-41
Identities = 70/106 (66%), Positives = 91/106 (85%)
Query: 370 ELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTN 429
E++ K+ HPDRLH ELW+ND G+MNDGPLC+CS+K+RR+GIRH+IY GE+ C P TN
Sbjct: 269 EIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTN 328
Query: 430 NADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPL 475
NA +L+HYR+TVSPPTNFL ++PTVIE+D+ E+IFEGFS+F+H PL
Sbjct: 329 NAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPL 374
Score = 59 (25.8 bits), Expect = 1.6e-41, Sum P(2) = 1.6e-41
Identities = 23/98 (23%), Positives = 43/98 (43%)
Query: 230 DKWRMNNCSS-EREMT---EKFNTLAAMEADQIIEEE--KKIWTRSAPADLYYTK----R 279
D+W N S ++ T EK + ++ EEE K +W R ++ YY+ +
Sbjct: 132 DRWSDNQSSGKDKNYTSIKEKEPEETMPDKNEEEEEELLKPVWIRCTHSENYYSSDPMDQ 191
Query: 280 TEDDSYECTQKTRTICDEFESVI-QNFVSVKESKPQFD 316
D + T + R + D+FE + K ++P ++
Sbjct: 192 VGDSTVVGTSRLRDLYDKFEEELGSRQEKAKAARPPWE 229
>RGD|1307626 [details] [associations]
symbol:Drosha "drosha, ribonuclease type III" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0004521 "endoribonuclease activity" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010586 "miRNA metabolic process" evidence=ISO]
[GO:0031054 "pre-miRNA processing" evidence=ISO] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
RGD:1307626 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 BRENDA:3.1.26.3 PANTHER:PTHR11207
HOGENOM:HOG000122291 HOVERGEN:HBG023130 OrthoDB:EOG4VQ9NG
UniGene:Rn.41113 IPI:IPI00870720 EMBL:AY373464
ProteinModelPortal:Q67B98 STRING:Q67B98 PRIDE:Q67B98
InParanoid:Q67B98 ArrayExpress:Q67B98 Genevestigator:Q67B98
Uniprot:Q67B98
Length = 288
Score = 236 (88.1 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 42/75 (56%), Positives = 61/75 (81%)
Query: 948 QEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEF 1007
QEP+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EF
Sbjct: 3 QEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEF 62
Query: 1008 LGDTVLQLITSDYLY 1022
LGD+++QL+ ++YL+
Sbjct: 63 LGDSIMQLVATEYLF 77
Score = 151 (58.2 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 34/108 (31%), Positives = 65/108 (60%)
Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
HN+R+EFLGD++++ + + +LF FPD EG L R+++V N+ A +A+ +G+++
Sbjct: 56 HNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE--- 112
Query: 882 YAHGSDLCHE-VELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
YA +D V L+ +A+ E+ + AL++D ++ F +V +
Sbjct: 113 YAITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYV-HTFMNVCF 159
>UNIPROTKB|F1M2R2 [details] [associations]
symbol:F1M2R2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
IPI:IPI00951546 Ensembl:ENSRNOT00000066555 ArrayExpress:F1M2R2
Uniprot:F1M2R2
Length = 287
Score = 236 (88.1 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 42/75 (56%), Positives = 61/75 (81%)
Query: 948 QEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEF 1007
QEP+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EF
Sbjct: 2 QEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEF 61
Query: 1008 LGDTVLQLITSDYLY 1022
LGD+++QL+ ++YL+
Sbjct: 62 LGDSIMQLVATEYLF 76
Score = 151 (58.2 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 34/108 (31%), Positives = 65/108 (60%)
Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
HN+R+EFLGD++++ + + +LF FPD EG L R+++V N+ A +A+ +G+++
Sbjct: 55 HNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE--- 111
Query: 882 YAHGSDLCHE-VELK-HAMANCFEALMGALFLDGGIDVADQVFSSVLY 927
YA +D V L+ +A+ E+ + AL++D ++ F +V +
Sbjct: 112 YAITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYV-HTFMNVCF 158
>TIGR_CMR|BA_3987 [details] [associations]
symbol:BA_3987 "ribonuclease III" species:198094 "Bacillus
anthracis str. Ames" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 ProtClustDB:PRK00102 TIGRFAMs:TIGR02191
RefSeq:NP_846229.1 RefSeq:YP_020627.1 RefSeq:YP_029951.1
ProteinModelPortal:Q81WI8 DNASU:1087539
EnsemblBacteria:EBBACT00000008054 EnsemblBacteria:EBBACT00000016917
EnsemblBacteria:EBBACT00000023512 GeneID:1087539 GeneID:2816770
GeneID:2849362 KEGG:ban:BA_3987 KEGG:bar:GBAA_3987 KEGG:bat:BAS3700
HOGENOM:HOG000246808 OMA:LTHKSCK
BioCyc:BANT260799:GJAJ-3758-MONOMER
BioCyc:BANT261594:GJ7F-3875-MONOMER Uniprot:Q81WI8
Length = 245
Score = 203 (76.5 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 58/164 (35%), Positives = 81/164 (49%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
NERLEFLGDAV+E S +LF +P + EG L RAAIV L A + +L
Sbjct: 57 NERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLL 116
Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP 941
G ++ E +A+ FEA +GAL+LD G++ ++Y K NE F M Y
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYK 176
Query: 942 QHPLQEQ-EPDGDRQWVEQSPLLKQ--LQYLEYSSGVIFNHIRL 982
LQE + DG +E L ++ E+ S V N++ L
Sbjct: 177 SQ-LQELIQRDGSGN-IEYQILQEKGPAHNREFVSRVTLNNVAL 218
Score = 49 (22.3 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 729 RFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARN 773
++ + + +++I F + LL A TH SY P H N
Sbjct: 14 KYREAFKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKP-HEDN 57
>TIGR_CMR|DET_1025 [details] [associations]
symbol:DET_1025 "ribonuclease III" species:243164
"Dehalococcoides ethenogenes 195" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
TIGRFAMs:TIGR02191 HOGENOM:HOG000246808 OMA:LTHKSCK
RefSeq:YP_181741.1 ProteinModelPortal:Q3Z7Q8 STRING:Q3Z7Q8
GeneID:3229696 KEGG:det:DET1025 PATRIC:21609095
ProtClustDB:CLSK837151 BioCyc:DETH243164:GJNF-1026-MONOMER
Uniprot:Q3Z7Q8
Length = 237
Score = 192 (72.6 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 56/168 (33%), Positives = 89/168 (52%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
NER+EFLGDAV+ I + L+H FPDI+EG L +R+ +V+ + L +A I L ++
Sbjct: 42 NERMEFLGDAVLGVIFADRLYHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYL 101
Query: 883 AHGSDLCHEVELKHA-MANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYP 941
G D + K A +A FEA++ A++LD GID +V L+K R +
Sbjct: 102 GRGED-ASKGRFKPANLAGAFEAVLAAIYLDKGIDATREVIFR-LFKTEMERVQTLSSNI 159
Query: 942 QHPLQEQEPDGDRQWVE-QSPLLKQLQYLEYSSGVIFNHIRLLARVFT 988
+ + QE V+ Q L + + +++S G NH+ +A V+T
Sbjct: 160 DYKSRLQE------LVQAQFQLTPRYRIIDFS-GPEHNHL-FIAEVYT 199
Score = 60 (26.2 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 734 LNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNS 774
L LE + KF+N LL+ AL H S+ NP+H S
Sbjct: 4 LTELEKSLGVKFENLSLLEQALIHTSW---VNENPNHLSGS 41
>TIGR_CMR|ECH_1054 [details] [associations]
symbol:ECH_1054 "ribonuclease III" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003725 "double-stranded
RNA binding" evidence=ISS] [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HSSP:Q9X0I6 HOGENOM:HOG000246809 ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 OMA:LTHKSCK RefSeq:YP_507839.1
ProteinModelPortal:Q2GFE4 STRING:Q2GFE4 GeneID:3927257
KEGG:ech:ECH_1054 PATRIC:20577460
BioCyc:ECHA205920:GJNR-1057-MONOMER Uniprot:Q2GFE4
Length = 226
Score = 184 (69.8 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 39/95 (41%), Positives = 55/95 (57%)
Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
ERLEFLGDAV+ + S LF++FP EG LA + A+V L +A+ I L F++ +
Sbjct: 39 ERLEFLGDAVLNIVISEMLFNIFPKDTEGNLAKKKTALVCGNKLVEVAQSINLGQFIMMS 98
Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
G C + + N EAL+GA++LDGG A
Sbjct: 99 DGERACGGINNFRNLENALEALIGAIYLDGGFTAA 133
Score = 59 (25.8 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 741 IQYKFQNRYLLQLALTHPS 759
I+Y F+N LL ALTHPS
Sbjct: 9 IKYNFKNPQLLNEALTHPS 27
>TIGR_CMR|CHY_1444 [details] [associations]
symbol:CHY_1444 "ribonuclease III" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004525
"ribonuclease III activity" evidence=ISS] [GO:0006396 "RNA
processing" evidence=ISS] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 TIGRFAMs:TIGR02191 HOGENOM:HOG000246808
OMA:LTHKSCK RefSeq:YP_360276.1 ProteinModelPortal:Q3AC58
STRING:Q3AC58 GeneID:3727428 KEGG:chy:CHY_1444 PATRIC:21276019
BioCyc:CHYD246194:GJCN-1443-MONOMER Uniprot:Q3AC58
Length = 235
Score = 187 (70.9 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 58/175 (33%), Positives = 91/175 (52%)
Query: 817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL 876
E I HNERLEFLGDAV+E S +LF FP EG L R+ +V + L LA +I L
Sbjct: 38 EEGIEHNERLEFLGDAVLELFISDYLFRTFPQKSEGDLTKLRSRLVCAESLYELAFKINL 97
Query: 877 EDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA----DQVFSSVLYKDN-E 931
+ F+ G + +AN EA++GA++ D GI+ A +++ L +N E
Sbjct: 98 DKFLRLGKGEFKAGGNQRMSNLANAVEAVIGAVYFDCGIEAAFSFITRLYGEKLKPENLE 157
Query: 932 VRFKQWMYYPQHPLQEQEPDGDRQWV--EQSPLLKQLQYLEYSSGVIFNHIRLLA 984
K Q LQ+++ + R + E+ P +++ +++GVI N +L+A
Sbjct: 158 QLPKDEKTTLQELLQKEKNNVLRYEILLEEGPPHQKI----FTAGVIIND-KLIA 207
Score = 55 (24.4 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 737 LEDRIQYKFQNRYLLQLALTHPSY 760
LE + + F N +L A+THPSY
Sbjct: 9 LEKILGFNFNNPSILLSAITHPSY 32
>TIGR_CMR|CJE_1807 [details] [associations]
symbol:CJE_1807 "ribonuclease III" species:195099
"Campylobacter jejuni RM1221" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 HOGENOM:HOG000246808
OMA:LTHKSCK RefSeq:YP_179777.1 ProteinModelPortal:Q5HSF8
STRING:Q5HSF8 GeneID:3232434 KEGG:cjr:CJE1807 PATRIC:20045436
BioCyc:CJEJ195099:GJC0-1841-MONOMER Uniprot:Q5HSF8
Length = 224
Score = 163 (62.4 bits), Expect = 9.8e-14, Sum P(2) = 9.8e-14
Identities = 35/108 (32%), Positives = 60/108 (55%)
Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
+NERLEFLGDAV++ + +LFH F EG L+ RAA+V + A +A + L DF+
Sbjct: 35 NNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIF 94
Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 929
+ + E +++ EA++GA+ L+ G + + ++ K+
Sbjct: 95 MSVAEENNGGREKPSILSDALEAIIGAIHLEAGFEFTKTIALRLIEKN 142
Score = 62 (26.9 bits), Expect = 9.8e-14, Sum P(2) = 9.8e-14
Identities = 11/33 (33%), Positives = 24/33 (72%)
Query: 732 RSLNVLEDRIQYKFQNRYLLQLALTHPSYRENF 764
+++ LE + Y+F+++ LL ALTH S+++++
Sbjct: 2 KNIEKLERSLTYEFKDKNLLIHALTHKSFKKSY 34
>TIGR_CMR|SO_1348 [details] [associations]
symbol:SO_1348 "ribonuclease III" species:211586
"Shewanella oneidensis MR-1" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 RefSeq:NP_716968.1 ProteinModelPortal:Q8EH81
GeneID:1169169 KEGG:son:SO_1348 PATRIC:23522350 Uniprot:Q8EH81
Length = 226
Score = 171 (65.3 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 35/100 (35%), Positives = 57/100 (57%)
Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
HNERLEFLGD+++ + S L+H FP EG L+ RA +V+ L +A+ L D++
Sbjct: 37 HNERLEFLGDSILSIVISDALYHQFPKATEGDLSRMRATLVRGDTLTLIAQAFKLGDYLF 96
Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
G + +A+ EA++GA++LD ++V Q+
Sbjct: 97 LGPGELKSGGFRRESILADAVEAIIGAIYLDSDLEVCRQL 136
Score = 44 (20.5 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 743 YKFQNRYLLQLALTHPS 759
Y+F+N LL ALTH S
Sbjct: 16 YEFKNLDLLTQALTHRS 32
>TIGR_CMR|CBU_1503 [details] [associations]
symbol:CBU_1503 "ribonuclease III" species:227377
"Coxiella burnetii RSA 493" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 EMBL:L27436
KO:K03685 HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 PIR:S60767 RefSeq:NP_820486.1
ProteinModelPortal:P51837 GeneID:1209413 KEGG:cbu:CBU_1503
PATRIC:17931771 BioCyc:CBUR227377:GJ7S-1488-MONOMER Uniprot:P51837
Length = 233
Score = 167 (63.8 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 32/99 (32%), Positives = 58/99 (58%)
Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
S +NERLEFLGD+V+ FI + L+ P EG L+ RA++V LA ++ ++G+
Sbjct: 30 SGADNNERLEFLGDSVLGFIIASELYQRRPQAREGDLSRMRASMVNGDELAQMSTKLGIN 89
Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
+++ G + +A+ EA++GA+++D G++
Sbjct: 90 EYLQLGVGEQKSGGKRRRSILADALEAIVGAIYIDAGLE 128
Score = 61 (26.5 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 734 LNVLEDRIQYKFQNRYLLQLALTHPS 759
LN L +R+ ++F N LL++ALTH S
Sbjct: 4 LNKLMERLGHQFNNLELLKIALTHCS 29
>TIGR_CMR|APH_1149 [details] [associations]
symbol:APH_1149 "ribonuclease III" species:212042
"Anaplasma phagocytophilum HZ" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
RefSeq:YP_505691.1 HSSP:Q9X0I6 ProteinModelPortal:Q2GIW0
STRING:Q2GIW0 GeneID:3930479 KEGG:aph:APH_1149 PATRIC:20951072
HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
BioCyc:APHA212042:GHPM-1155-MONOMER TIGRFAMs:TIGR02191
Uniprot:Q2GIW0
Length = 236
Score = 165 (63.1 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 36/103 (34%), Positives = 60/103 (58%)
Query: 814 VATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKR 873
+A E ++ ERLEFLGDAV+ + S L+ +FPD EG L R A+V+ + +A+
Sbjct: 39 IAAERYASY-ERLEFLGDAVLGLVVSEMLYTLFPDDSEGLLTKKRIALVRGSKVVEIAQS 97
Query: 874 IGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
+ L + +L + G + + N EAL+GA+++DGG++
Sbjct: 98 LNLGNILLMSKGELTSGGISNNSNLENALEALIGAIYVDGGLE 140
Score = 56 (24.8 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 743 YKFQNRYLLQLALTHPS 759
Y+FQ+ LL+ A+THPS
Sbjct: 22 YRFQDHELLKTAVTHPS 38
>UNIPROTKB|Q9KPB2 [details] [associations]
symbol:rnc "Ribonuclease 3" species:243277 "Vibrio cholerae
O1 biovar El Tor str. N16961" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0006396 GO:GO:0003725 GO:GO:0008033 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 OMA:LTHKSCK PIR:B82073
RefSeq:NP_232090.1 ProteinModelPortal:Q9KPB2 DNASU:2613003
GeneID:2613003 KEGG:vch:VC2461 PATRIC:20083943 Uniprot:Q9KPB2
Length = 225
Score = 173 (66.0 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 34/104 (32%), Positives = 58/104 (55%)
Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
+N HNERLEFLGD+++ F+ + L+ FP + EG ++ RA +V+ LA L + L
Sbjct: 31 ANGKHNERLEFLGDSILSFVIADELYRRFPKVNEGDMSRMRATLVRGNTLAELGREFDLG 90
Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
D++ G +A+ EA++GA++LD ++ A +
Sbjct: 91 DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDLETARSI 134
>TIGR_CMR|VC_2461 [details] [associations]
symbol:VC_2461 "ribonuclease III" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0006396 GO:GO:0003725 GO:GO:0008033 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 OMA:LTHKSCK PIR:B82073
RefSeq:NP_232090.1 ProteinModelPortal:Q9KPB2 DNASU:2613003
GeneID:2613003 KEGG:vch:VC2461 PATRIC:20083943 Uniprot:Q9KPB2
Length = 225
Score = 173 (66.0 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 34/104 (32%), Positives = 58/104 (55%)
Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
+N HNERLEFLGD+++ F+ + L+ FP + EG ++ RA +V+ LA L + L
Sbjct: 31 ANGKHNERLEFLGDSILSFVIADELYRRFPKVNEGDMSRMRATLVRGNTLAELGREFDLG 90
Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
D++ G +A+ EA++GA++LD ++ A +
Sbjct: 91 DYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDLETARSI 134
>DICTYBASE|DDB_G0268410 [details] [associations]
symbol:drnB "putative RNase III" species:44689
"Dictyostelium discoideum" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 dictyBase:DDB_G0268410 GenomeReviews:CM000150_GR
Gene3D:3.30.160.20 EMBL:AAFI02000003 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
RefSeq:XP_647462.2 ProteinModelPortal:Q55FS1
EnsemblProtists:DDB0231869 GeneID:8616269 KEGG:ddi:DDB_G0268410
OMA:NEYENEY ProtClustDB:CLSZ2431100 Uniprot:Q55FS1
Length = 1385
Score = 183 (69.5 bits), Expect = 1.0e-11, Sum P(4) = 1.0e-11
Identities = 46/154 (29%), Positives = 83/154 (53%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
N+RLEFLGD+V++ +++I+LF +P + EG L+ R+ +N HL ++KR+GLE+ + +
Sbjct: 1094 NQRLEFLGDSVLKLVSTIYLFFKYPKMSEGFLSQTRSDFTKNDHLLDVSKRLGLEEILRF 1153
Query: 883 AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 942
E E + A+ EAL+GA+++D G A ++ ++ + + + + +
Sbjct: 1154 TT------EEEFRKPQADVIEALIGAVYIDRGFFEAYKLTVCWIFDEPDAEYPIYNTKFE 1207
Query: 943 HPLQEQEP----DGDRQWVEQSPLLKQLQYLEYS 972
L QE DG + S LL++ YS
Sbjct: 1208 ETLAHQEIRAFLDGIGVHISHSSLLEEALCFPYS 1241
Score = 69 (29.3 bits), Expect = 1.0e-11, Sum P(4) = 1.0e-11
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 1001 SNQRLEFLGDTVLQLITSDYLY 1022
S QRLE++GD VL SD+LY
Sbjct: 1248 SYQRLEYVGDAVLDFFVSDFLY 1269
Score = 57 (25.1 bits), Expect = 1.0e-11, Sum P(4) = 1.0e-11
Identities = 21/92 (22%), Positives = 38/92 (41%)
Query: 26 VKPNIQQMALN---EPSSSALQFNTVDVKQPPPGFSQSCNHKILVSKSFDCKTGTTQVDN 82
+ ++ Q LN +P++ ++ N PPP + V+K KT + + D+
Sbjct: 315 IPASVNQPQLNTTPKPNNQIIETNQQPPPPPPPPQDTTKKKNSYVNKK-SLKTNSGKTDD 373
Query: 83 LPSTNVSNQSNPITPQTSTGRT---NQYNRWT 111
S S+ N ++ST YN +T
Sbjct: 374 CHSFETSDSENDGIEESSTTNPFYFQSYNSYT 405
Score = 39 (18.8 bits), Expect = 6.3e-10, Sum P(4) = 6.3e-10
Identities = 13/67 (19%), Positives = 29/67 (43%)
Query: 31 QQMALNEPSSSALQFNTVDVKQPPPGFSQSCNHKILVSKSFDCKTGTTQVDNLPSTNVSN 90
QQ + +QFN+ D++ ++ L+S S D + ++ D + S +
Sbjct: 175 QQQQQQQQQQQLIQFNSEDLECLKKPMQNPLSNTQLLSSSSDEEENSSS-DPIDSFSFIR 233
Query: 91 QSNPITP 97
+ + + P
Sbjct: 234 KDDVLAP 240
Score = 37 (18.1 bits), Expect = 1.0e-11, Sum P(4) = 1.0e-11
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 742 QYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPE 784
+Y+++N Y + + + EN N + + N V + E
Sbjct: 809 EYEYENDYEYEYENENENENENENENENENEIEIENENVNEYE 851
>UNIPROTKB|P0A7Y0 [details] [associations]
symbol:rnc "RNase III" species:83333 "Escherichia coli
K-12" [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IEA;IDA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA;IDA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0006396 EMBL:D64044 EMBL:U36841
GO:GO:0003725 GO:GO:0008033 GO:GO:0016075 GO:GO:0019843
GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 BRENDA:3.1.26.3 PANTHER:PTHR11207 EMBL:M14658
EMBL:X02673 KO:K03685 HOGENOM:HOG000246809 ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 OMA:LTHKSCK EMBL:X02946 EMBL:M26415 PIR:F65034
RefSeq:NP_417062.1 RefSeq:YP_490795.1 ProteinModelPortal:P0A7Y0
SMR:P0A7Y0 DIP:DIP-48223N IntAct:P0A7Y0 MINT:MINT-1227120
PhosSite:P010446 PaxDb:P0A7Y0 PRIDE:P0A7Y0
EnsemblBacteria:EBESCT00000001804 EnsemblBacteria:EBESCT00000001805
EnsemblBacteria:EBESCT00000015272 GeneID:12931603 GeneID:947033
KEGG:ecj:Y75_p2520 KEGG:eco:b2567 PATRIC:32120533 EchoBASE:EB0850
EcoGene:EG10857 BioCyc:EcoCyc:EG10857-MONOMER
BioCyc:ECOL316407:JW2551-MONOMER BioCyc:MetaCyc:EG10857-MONOMER
Genevestigator:P0A7Y0 Uniprot:P0A7Y0
Length = 226
Score = 170 (64.9 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 39/129 (30%), Positives = 68/129 (52%)
Query: 794 NTRKRGINTLINIMSKLGRKVATES-NITHNERLEFLGDAVVEFITSIHLFHVFPDIEEG 852
N +R + N L + + S + HNERLEFLGD+++ ++ + L+H FP ++EG
Sbjct: 7 NRLQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLGDSILSYVIANALYHRFPRVDEG 66
Query: 853 GLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLD 912
++ RA +V+ LA LA+ L + + G + +A+ EAL+G +FLD
Sbjct: 67 DMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFLD 126
Query: 913 GGIDVADQV 921
I +++
Sbjct: 127 SDIQTVEKL 135
>DICTYBASE|DDB_G0274077 [details] [associations]
symbol:drnA-2 "putative RNAse III DrnA" species:44689
"Dictyostelium discoideum" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159 Pfam:PF00035
Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
SMART:SM00358 SMART:SM00535 InterPro:IPR014720
dictyBase:DDB_G0274077 dictyBase:DDB_G0273051 Gene3D:3.30.160.20
GenomeReviews:CM000151_GR GO:GO:0005622 EMBL:AAFI02000011
EMBL:AAFI02000009 GO:GO:0006396 GO:GO:0003725 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
ProtClustDB:CLSZ2431100 EMBL:AJ314911 RefSeq:XP_644397.1
RefSeq:XP_645016.1 ProteinModelPortal:Q95ZG5
EnsemblProtists:DDB0220441 EnsemblProtists:DDB0238743
GeneID:8618693 GeneID:8619283 KEGG:ddi:DDB_G0273051
KEGG:ddi:DDB_G0274077 Uniprot:Q95ZG5
Length = 1203
Score = 162 (62.1 bits), Expect = 8.8e-11, Sum P(4) = 8.8e-11
Identities = 58/205 (28%), Positives = 96/205 (46%)
Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
+RLEFLGD+V++ +S++LF F + EG L+ R +N++L L++RIG + +
Sbjct: 926 QRLEFLGDSVLKITSSLYLFKKFDNEGEGLLSKKREFYTKNEYLTELSRRIGFDYILRIT 985
Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQ 942
D H HA + EA +GA++++ G D D + + DN Y
Sbjct: 986 TIGD--HSKP--HA--DLIEAFIGAIYIECGFKDSFDWIIKWIF--DNSYYGSDNKIYGG 1037
Query: 943 HPLQEQEPDGDRQWVEQSPLLKQLQY---LEYSSGVIFNHI--RLLARVFTTRSMGYTNL 997
+ + D + + L+ Y +Y + FN L++ + N
Sbjct: 1038 GGGGSEINNNDELPIIEDNLINYKYYDQINQYLNSTDFNDQTNELVSNDHFYSNQNNNNN 1097
Query: 998 TLGSNQRLEFLGDTVLQLITSDYLY 1022
T ++RLEFLGD VL I +DYL+
Sbjct: 1098 T-NFSERLEFLGDAVLDFIVADYLF 1121
Score = 114 (45.2 bits), Expect = 7.6e-06, Sum P(4) = 7.6e-06
Identities = 22/55 (40%), Positives = 38/55 (69%)
Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAK 872
+N +ERLEFLGDAV++FI + +LF + + +EG L ++ +V N++L+ + K
Sbjct: 1096 NNTNFSERLEFLGDAVLDFIVADYLFSKYKEQQEGYLTESKSKLVNNENLSKILK 1150
Score = 84 (34.6 bits), Expect = 8.8e-11, Sum P(4) = 8.8e-11
Identities = 34/158 (21%), Positives = 64/158 (40%)
Query: 420 EQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEG-FSLFSHHPLEKL 478
++ F + + +LY Y++ +S P N + EH +E+ F F LFS + L L
Sbjct: 555 DKLFNSNNITEITELYVYKIIISNPPNII-----KFEHQEKEYEFSSEFLLFSINKLPTL 609
Query: 479 PTCKVIR-----FNIQYTIVYIEEKVPNGFTVKDTEL-----FFNYLFHEILELVDLDLK 528
P V F + T ++ +++ P +K E N F ++L L +K
Sbjct: 610 PVIHVSNLANDHFGVAITNLFDDQQQPTKIQLKKIEFEKLITIHNSFFSKLLCQKYLKVK 669
Query: 529 SANNKDGCPQFH-IMPRFVRELKDNGKELLPMYRVLEF 565
N++ H ++P D + + + +F
Sbjct: 670 DITNENNFNNSHLVIPNINENYTDFNRLFDDLLNLFDF 707
Score = 48 (22.0 bits), Expect = 8.8e-11, Sum P(4) = 8.8e-11
Identities = 24/87 (27%), Positives = 43/87 (49%)
Query: 683 LQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSL-------N 735
L++ + NSK+ R + + GF ++ ++P LIC L+++ + N
Sbjct: 819 LKDYQRNSKILRKNPLEVVVVGF---PCFVGLLGKFGVLP-LICELKWNLKVLKFINESN 874
Query: 736 VLEDRIQYKFQNR---YLLQLALTHPS 759
++D I KF+N +L+ LTHPS
Sbjct: 875 YIKD-IVCKFKNNTNNQVLREVLTHPS 900
Score = 41 (19.5 bits), Expect = 8.8e-11, Sum P(4) = 8.8e-11
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 269 SAPADLYYTKRTEDDSYECTQKTRTICDEFESVIQNFVSVKESK 312
S+P+D Y E T T T ++ + V VK K
Sbjct: 500 SSPSDQEYKNNKEKKVETITTATTTATTTKTAITSSIVKVKPPK 543
>DICTYBASE|DDB_G0273051 [details] [associations]
symbol:drnA-1 "putative RNAse III DrnA" species:44689
"Dictyostelium discoideum" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159 Pfam:PF00035
Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
SMART:SM00358 SMART:SM00535 InterPro:IPR014720
dictyBase:DDB_G0274077 dictyBase:DDB_G0273051 Gene3D:3.30.160.20
GenomeReviews:CM000151_GR GO:GO:0005622 EMBL:AAFI02000011
EMBL:AAFI02000009 GO:GO:0006396 GO:GO:0003725 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
ProtClustDB:CLSZ2431100 EMBL:AJ314911 RefSeq:XP_644397.1
RefSeq:XP_645016.1 ProteinModelPortal:Q95ZG5
EnsemblProtists:DDB0220441 EnsemblProtists:DDB0238743
GeneID:8618693 GeneID:8619283 KEGG:ddi:DDB_G0273051
KEGG:ddi:DDB_G0274077 Uniprot:Q95ZG5
Length = 1203
Score = 162 (62.1 bits), Expect = 8.8e-11, Sum P(4) = 8.8e-11
Identities = 58/205 (28%), Positives = 96/205 (46%)
Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
+RLEFLGD+V++ +S++LF F + EG L+ R +N++L L++RIG + +
Sbjct: 926 QRLEFLGDSVLKITSSLYLFKKFDNEGEGLLSKKREFYTKNEYLTELSRRIGFDYILRIT 985
Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQ 942
D H HA + EA +GA++++ G D D + + DN Y
Sbjct: 986 TIGD--HSKP--HA--DLIEAFIGAIYIECGFKDSFDWIIKWIF--DNSYYGSDNKIYGG 1037
Query: 943 HPLQEQEPDGDRQWVEQSPLLKQLQY---LEYSSGVIFNHI--RLLARVFTTRSMGYTNL 997
+ + D + + L+ Y +Y + FN L++ + N
Sbjct: 1038 GGGGSEINNNDELPIIEDNLINYKYYDQINQYLNSTDFNDQTNELVSNDHFYSNQNNNNN 1097
Query: 998 TLGSNQRLEFLGDTVLQLITSDYLY 1022
T ++RLEFLGD VL I +DYL+
Sbjct: 1098 T-NFSERLEFLGDAVLDFIVADYLF 1121
Score = 114 (45.2 bits), Expect = 7.6e-06, Sum P(4) = 7.6e-06
Identities = 22/55 (40%), Positives = 38/55 (69%)
Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAK 872
+N +ERLEFLGDAV++FI + +LF + + +EG L ++ +V N++L+ + K
Sbjct: 1096 NNTNFSERLEFLGDAVLDFIVADYLFSKYKEQQEGYLTESKSKLVNNENLSKILK 1150
Score = 84 (34.6 bits), Expect = 8.8e-11, Sum P(4) = 8.8e-11
Identities = 34/158 (21%), Positives = 64/158 (40%)
Query: 420 EQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEG-FSLFSHHPLEKL 478
++ F + + +LY Y++ +S P N + EH +E+ F F LFS + L L
Sbjct: 555 DKLFNSNNITEITELYVYKIIISNPPNII-----KFEHQEKEYEFSSEFLLFSINKLPTL 609
Query: 479 PTCKVIR-----FNIQYTIVYIEEKVPNGFTVKDTEL-----FFNYLFHEILELVDLDLK 528
P V F + T ++ +++ P +K E N F ++L L +K
Sbjct: 610 PVIHVSNLANDHFGVAITNLFDDQQQPTKIQLKKIEFEKLITIHNSFFSKLLCQKYLKVK 669
Query: 529 SANNKDGCPQFH-IMPRFVRELKDNGKELLPMYRVLEF 565
N++ H ++P D + + + +F
Sbjct: 670 DITNENNFNNSHLVIPNINENYTDFNRLFDDLLNLFDF 707
Score = 48 (22.0 bits), Expect = 8.8e-11, Sum P(4) = 8.8e-11
Identities = 24/87 (27%), Positives = 43/87 (49%)
Query: 683 LQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSL-------N 735
L++ + NSK+ R + + GF ++ ++P LIC L+++ + N
Sbjct: 819 LKDYQRNSKILRKNPLEVVVVGF---PCFVGLLGKFGVLP-LICELKWNLKVLKFINESN 874
Query: 736 VLEDRIQYKFQNR---YLLQLALTHPS 759
++D I KF+N +L+ LTHPS
Sbjct: 875 YIKD-IVCKFKNNTNNQVLREVLTHPS 900
Score = 41 (19.5 bits), Expect = 8.8e-11, Sum P(4) = 8.8e-11
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 269 SAPADLYYTKRTEDDSYECTQKTRTICDEFESVIQNFVSVKESK 312
S+P+D Y E T T T ++ + V VK K
Sbjct: 500 SSPSDQEYKNNKEKKVETITTATTTATTTKTAITSSIVKVKPPK 543
>UNIPROTKB|P66666 [details] [associations]
symbol:rnc "Ribonuclease 3" species:1773 "Mycobacterium
tuberculosis" [GO:0040007 "growth" evidence=IMP] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005737 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
EMBL:BX842581 GO:GO:0016075 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 ProtClustDB:PRK00102 TIGRFAMs:TIGR02191
HOGENOM:HOG000246808 OMA:LTHKSCK PIR:E70748 RefSeq:NP_217441.1
RefSeq:NP_337508.1 RefSeq:YP_006516379.1 PDB:2A11 PDBsum:2A11
ProteinModelPortal:P66666 SMR:P66666 PRIDE:P66666
EnsemblBacteria:EBMYCT00000002463 EnsemblBacteria:EBMYCT00000072869
GeneID:13317719 GeneID:887873 GeneID:925280 KEGG:mtc:MT2995
KEGG:mtu:Rv2925c KEGG:mtv:RVBD_2925c PATRIC:18128352
TubercuList:Rv2925c EvolutionaryTrace:P66666 Uniprot:P66666
Length = 240
Score = 168 (64.2 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 44/114 (38%), Positives = 64/114 (56%)
Query: 812 RKVATESN-ITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
R A E+ + NERLEFLGDAV+ + LFH PD EG LA RA++V Q LA +
Sbjct: 28 RSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALADV 87
Query: 871 AKRI---GLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
A+R+ GL +L G + +A+ E+L+GA++L G++ A +V
Sbjct: 88 ARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAREV 141
>TIGR_CMR|NSE_0918 [details] [associations]
symbol:NSE_0918 "ribonuclease III" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0004525 "ribonuclease
III activity" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685 HOGENOM:HOG000246809
TIGRFAMs:TIGR02191 OMA:LTHKSCK RefSeq:YP_506782.1
ProteinModelPortal:Q2GCL4 STRING:Q2GCL4 GeneID:3931585
KEGG:nse:NSE_0918 PATRIC:22681823 ProtClustDB:CLSK2528151
BioCyc:NSEN222891:GHFU-920-MONOMER Uniprot:Q2GCL4
Length = 222
Score = 152 (58.6 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 33/93 (35%), Positives = 56/93 (60%)
Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
ERLEFLGDAV+ + + L+ +FP EG L+ ++A++ LA LA+++ L D++ +
Sbjct: 36 ERLEFLGDAVLNLVIASMLYDLFPGDPEGRLSHRQSALICKNTLAMLARQMNLGDYIRLS 95
Query: 884 HGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
+ + + N EAL+GA+FLD G++
Sbjct: 96 SSEEAGGGRDKTSNLENVLEALVGAIFLDAGLE 128
Score = 50 (22.7 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 734 LNVLEDRIQYKFQNRYLLQLALTHPS 759
L L+ + F+N+ LL ALTHPS
Sbjct: 3 LEELQSLLGVYFKNKDLLVEALTHPS 28
>TIGR_CMR|GSU_2228 [details] [associations]
symbol:GSU_2228 "ribonuclease III" species:243231
"Geobacter sulfurreducens PCA" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 TIGRFAMs:TIGR02191 OMA:LTHKSCK
RefSeq:NP_953277.1 ProteinModelPortal:Q74AX1 GeneID:2687587
KEGG:gsu:GSU2228 PATRIC:22027311 ProtClustDB:CLSK828768
BioCyc:GSUL243231:GH27-2184-MONOMER Uniprot:Q74AX1
Length = 248
Score = 164 (62.8 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 41/137 (29%), Positives = 67/137 (48%)
Query: 779 GVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFIT 838
G E + I ++ T +R ++ + S L + NERLEF GDA++ F
Sbjct: 12 GAASTEGLETSIGYRFTDRRFLDEALTHRSWLNE--VRSPTVPDNERLEFFGDAILGFCI 69
Query: 839 SIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAM 898
L +P+ EG LA ++A+V + LA LA + L ++ G + + +
Sbjct: 70 GKMLLRHYPESREGALARMKSALVGEETLADLAAAVELGSYLRLGRGEERSGGRHRRSLL 129
Query: 899 ANCFEALMGALFLDGGI 915
AN EAL+ A++LDGG+
Sbjct: 130 ANALEALLAAMYLDGGM 146
>POMBASE|SPBC119.11c [details] [associations]
symbol:pac1 "double-strand-specific ribonuclease Pac1"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0016180
"snRNA processing" evidence=IMP] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IMP] [GO:0032296
"double-stranded RNA-specific ribonuclease activity" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 PomBase:SPBC119.11c InterPro:IPR014720 GO:GO:0007126
GO:GO:0005730 GO:GO:0046872 EMBL:CU329671 Gene3D:3.30.160.20
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0003725 GO:GO:0016075
GO:GO:0006364 GO:GO:0031137 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 PANTHER:PTHR11207 GO:GO:0032296 GO:GO:0016180
EMBL:X54998 EMBL:X53769 EMBL:S78982 EMBL:AY695821 EMBL:AY695822
PIR:S12605 RefSeq:NP_595292.1 ProteinModelPortal:P22192
STRING:P22192 EnsemblFungi:SPBC119.11c.1 GeneID:2540084
KEGG:spo:SPBC119.11c KO:K03685 OMA:PKIANIT OrthoDB:EOG40ZV6Z
NextBio:20801221 GermOnline:SPBC119.11c Uniprot:P22192
Length = 363
Score = 164 (62.8 bits), Expect = 9.0e-09, P = 9.0e-09
Identities = 37/105 (35%), Positives = 59/105 (56%)
Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
HNERLEFLGD+ T+ +F FP ++EG L+ RA V N+ A+ G + ++
Sbjct: 170 HNERLEFLGDSFFNLFTTRIIFSKFPQMDEGSLSKLRAKFVGNESADKFARLYGFDKTLV 229
Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 926
++ ++ + + +A+ FEA +GAL LDG + A Q S +L
Sbjct: 230 LSYSAEKDQLRKSQKVIADTFEAYLGALILDGQEETAFQWVSRLL 274
>TIGR_CMR|CPS_4122 [details] [associations]
symbol:CPS_4122 "ribonuclease III" species:167879
"Colwellia psychrerythraea 34H" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 TIGRFAMs:TIGR02191 OMA:LTHKSCK
RefSeq:YP_270777.1 ProteinModelPortal:Q47WP5 STRING:Q47WP5
GeneID:3521712 KEGG:cps:CPS_4122 PATRIC:21471107
BioCyc:CPSY167879:GI48-4135-MONOMER Uniprot:Q47WP5
Length = 266
Score = 148 (57.2 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 31/95 (32%), Positives = 55/95 (57%)
Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
HNERLEFLGD+++ F+ + L+ FP +EG L R+++V+ LA +A+ L + ++
Sbjct: 38 HNERLEFLGDSILGFVIAEALYDKFPKHDEGDLTRMRSSLVKGVTLAEVARDFNLGECLI 97
Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGID 916
G + + + EA++GA++LD I+
Sbjct: 98 LGPGELKSGGHHRESILEDAIEAIIGAVYLDSNIE 132
Score = 42 (19.8 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 737 LEDRIQYKFQNRYLLQLALTHPS 759
L ++ Y+F LL ALTH S
Sbjct: 11 LTKKLGYEFNEPLLLVQALTHRS 33
>ASPGD|ASPL0000041548 [details] [associations]
symbol:dclB species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001650
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50142
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535
GO:GO:0005524 GO:GO:0046872 EMBL:BN001306 GO:GO:0051607
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AACD01000052
ProteinModelPortal:P0C5H7 HOGENOM:HOG000048683 OrthoDB:EOG4JWZNK
Uniprot:P0C5H7
Length = 1429
Score = 162 (62.1 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 65/216 (30%), Positives = 94/216 (43%)
Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
T +R EF GD+V++F + LF+ P+ EG L A+VQN L A GL+ ++
Sbjct: 906 TDYQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTETLHALVQNARLTRAALDQGLDAYI 965
Query: 881 LYAH------GSDLCHEVELKHA---------MANCFEALMGALFLDGGIDVADQVFSSV 925
+ + L E A +A+ EAL+GA ++DGG+ A
Sbjct: 966 ISNRFTPRKWSAPLISEKLYASASTRSMSAKVLADVVEALIGAAYIDGGLHKAQSCI--- 1022
Query: 926 LYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLAR 985
VRF + P+ L E + P L Q + LE G F LL
Sbjct: 1023 ------VRFLPEIELPETKLPRPE-SMPMSKDHKKPHLIQQENLENHIGYTFKDKTLLME 1075
Query: 986 VFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 1021
T S Y + ++ S QRLEFLGD VL ++ D +
Sbjct: 1076 ALTHPSCPY-DTSIQSYQRLEFLGDAVLDMLIVDLI 1110
Score = 48 (22.0 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 227 SNLDKWR-----MNN-CSSEREMTEKFNTLAAMEAD 256
S LDKW+ M C +R TE+ L +++ D
Sbjct: 474 STLDKWQKFEKIMEEACLEDRRRTEELRALGSLDED 509
Score = 42 (19.8 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 749 YLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGD 787
YLL THPS R+ F T + +SN R+ GD
Sbjct: 365 YLLS---THPSTRDRFRTG---SFIGMSNSTNRKTMLGD 397
Score = 38 (18.4 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 448 LINKPTVIEHDNQEFIFE-----GFSLF--SHHPLEKLPTCKVIR 485
+++ P V+ HD F G +F +HH + K PT ++R
Sbjct: 114 IVSTPAVL-HDAMTHGFVRISRLGLLIFDEAHHCIRKHPTNMIMR 157
>CGD|CAL0001312 [details] [associations]
symbol:DCR1 species:5476 "Candida albicans" [GO:0004525
"ribonuclease III activity" evidence=TAS] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=TAS]
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IMP;IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=IMP] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0034473 "U1 snRNA 3'-end processing"
evidence=IEA] [GO:0006325 "chromatin organization" evidence=IEA]
[GO:0009303 "rRNA transcription" evidence=IEA] [GO:0006379 "mRNA
cleavage" evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0030847 "termination of RNA polymerase II
transcription, exosome-dependent" evidence=IEA] [GO:0034475 "U4
snRNA 3'-end processing" evidence=IEA] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS50137 PROSITE:PS50142
SMART:SM00358 SMART:SM00535 InterPro:IPR014720 CGD:CAL0001312
GO:GO:0005737 GO:GO:0046872 GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0003725 GO:GO:0008033 GO:GO:0030422 GO:GO:0016075
GO:GO:0019843 EMBL:AACQ01000057 GO:GO:0006364 GO:GO:0004525
GO:GO:0035196 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 GO:GO:0003968 RefSeq:XP_717201.1
ProteinModelPortal:Q5A694 STRING:Q5A694 GeneID:3641164
KEGG:cal:CaO19.3796 Uniprot:Q5A694
Length = 611
Score = 159 (61.0 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 37/99 (37%), Positives = 58/99 (58%)
Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
+HNERLEF GD+++ + ++ +F FPD EG L+ R+ +V N+ L +A + G D
Sbjct: 272 SHNERLEFYGDSILNNLATLIIFKEFPDSTEGDLSKIRSKLVSNKTLIKIAFQYGF-DKK 330
Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVAD 919
L + SD + K A+ FEA +GAL ++ G D+ D
Sbjct: 331 LRSRISDDVLKTGDKKIFADVFEAYIGALAMERGFDLED 369
Score = 38 (18.4 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 435 YHYRV-TVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQ 489
YH V PPT I +EH + S+ LEK P C +++ I+
Sbjct: 101 YHEPVFDKPPPTTIGILDMNQLEHSTKTMQKCVSSI-----LEKAPNCNQLQYLIE 151
Score = 38 (18.4 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 14/62 (22%), Positives = 29/62 (46%)
Query: 56 GFSQSCNHKILVSKSFDCKTGTTQVDNLPSTNVSNQSNPITPQTSTGRTNQYNRWTICPA 115
GF N+ S+ D K ++ +D+ P +VS+ + + ++ N ++ PA
Sbjct: 21 GFMSYINNWTSTSQQEDNKVISSNLDD-P-LSVSDIDSDTSMSSNNSSKNHHSSKRSSPA 78
Query: 116 PM 117
P+
Sbjct: 79 PV 80
>UNIPROTKB|Q5A694 [details] [associations]
symbol:RNT1 "Probable ribonuclease III" species:237561
"Candida albicans SC5314" [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IDA] [GO:0004525 "ribonuclease III activity"
evidence=TAS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=TAS] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 CGD:CAL0001312 GO:GO:0005737 GO:GO:0046872
GO:GO:0006397 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033
GO:GO:0030422 GO:GO:0016075 GO:GO:0019843 EMBL:AACQ01000057
GO:GO:0006364 GO:GO:0004525 GO:GO:0035196 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
GO:GO:0003968 RefSeq:XP_717201.1 ProteinModelPortal:Q5A694
STRING:Q5A694 GeneID:3641164 KEGG:cal:CaO19.3796 Uniprot:Q5A694
Length = 611
Score = 159 (61.0 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 37/99 (37%), Positives = 58/99 (58%)
Query: 821 THNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
+HNERLEF GD+++ + ++ +F FPD EG L+ R+ +V N+ L +A + G D
Sbjct: 272 SHNERLEFYGDSILNNLATLIIFKEFPDSTEGDLSKIRSKLVSNKTLIKIAFQYGF-DKK 330
Query: 881 LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVAD 919
L + SD + K A+ FEA +GAL ++ G D+ D
Sbjct: 331 LRSRISDDVLKTGDKKIFADVFEAYIGALAMERGFDLED 369
Score = 38 (18.4 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 435 YHYRV-TVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQ 489
YH V PPT I +EH + S+ LEK P C +++ I+
Sbjct: 101 YHEPVFDKPPPTTIGILDMNQLEHSTKTMQKCVSSI-----LEKAPNCNQLQYLIE 151
Score = 38 (18.4 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 14/62 (22%), Positives = 29/62 (46%)
Query: 56 GFSQSCNHKILVSKSFDCKTGTTQVDNLPSTNVSNQSNPITPQTSTGRTNQYNRWTICPA 115
GF N+ S+ D K ++ +D+ P +VS+ + + ++ N ++ PA
Sbjct: 21 GFMSYINNWTSTSQQEDNKVISSNLDD-P-LSVSDIDSDTSMSSNNSSKNHHSSKRSSPA 78
Query: 116 PM 117
P+
Sbjct: 79 PV 80
>RGD|1309381 [details] [associations]
symbol:Dicer1 "dicer 1, ribonuclease type III" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001525 "angiogenesis" evidence=ISO] [GO:0001932 "regulation of
protein phosphorylation" evidence=ISO] [GO:0001942 "hair follicle
development" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0004525 "ribonuclease III activity" evidence=ISO]
[GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment"
evidence=IDA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0006915 "apoptotic process" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008283 "cell proliferation"
evidence=ISO] [GO:0009791 "post-embryonic development"
evidence=ISO] [GO:0010070 "zygote asymmetric cell division"
evidence=ISO] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010626 "negative regulation of Schwann cell
proliferation" evidence=ISO] [GO:0010628 "positive regulation of
gene expression" evidence=ISO] [GO:0014040 "positive regulation of
Schwann cell differentiation" evidence=ISO] [GO:0016442
"RNA-induced silencing complex" evidence=ISO] [GO:0019827 "stem
cell maintenance" evidence=ISO] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=ISO] [GO:0021675 "nerve
development" evidence=ISO] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=ISO] [GO:0021987 "cerebral cortex
development" evidence=ISO] [GO:0030324 "lung development"
evidence=ISO] [GO:0030326 "embryonic limb morphogenesis"
evidence=ISO] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISO] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0030424
"axon" evidence=IDA] [GO:0030425 "dendrite" evidence=IDA]
[GO:0030426 "growth cone" evidence=IDA] [GO:0031054 "pre-miRNA
processing" evidence=ISO] [GO:0031069 "hair follicle morphogenesis"
evidence=ISO] [GO:0031641 "regulation of myelination" evidence=ISO]
[GO:0031643 "positive regulation of myelination" evidence=ISO]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=ISO] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0035198 "miRNA binding"
evidence=ISO] [GO:0035264 "multicellular organism growth"
evidence=ISO] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=ISO] [GO:0042981 "regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0045069 "regulation of
viral genome replication" evidence=ISO] [GO:0045595 "regulation of
cell differentiation" evidence=ISO] [GO:0045664 "regulation of
neuron differentiation" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048536 "spleen development" evidence=ISO]
[GO:0048565 "digestive tract development" evidence=ISO] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=ISO]
[GO:0048730 "epidermis morphogenesis" evidence=ISO] [GO:0048754
"branching morphogenesis of an epithelial tube" evidence=ISO]
[GO:0048812 "neuron projection morphogenesis" evidence=ISO]
[GO:0050767 "regulation of neurogenesis" evidence=ISO] [GO:0051225
"spindle assembly" evidence=ISO] [GO:0051607 "defense response to
virus" evidence=ISO] [GO:0051726 "regulation of cell cycle"
evidence=ISO] [GO:0055013 "cardiac muscle cell development"
evidence=ISO] [GO:0060119 "inner ear receptor cell development"
evidence=ISO] [GO:0060253 "negative regulation of glial cell
proliferation" evidence=ISO] [GO:0060576 "intestinal epithelial
cell development" evidence=ISO] [GO:0070173 "regulation of enamel
mineralization" evidence=ISO] [GO:0071335 "hair follicle cell
proliferation" evidence=ISO] [GO:2000630 "positive regulation of
miRNA metabolic process" evidence=ISO] InterPro:IPR000999
InterPro:IPR001159 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
RGD:1309381 GO:GO:0030424 GO:GO:0030425 Gene3D:3.30.160.20
GO:GO:0030426 GO:GO:0003725 GO:GO:0005793 GO:GO:0010626
eggNOG:COG1111 GO:GO:0004525 GO:GO:0035196 Gene3D:1.10.1520.10
SUPFAM:SSF69065 HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W
GO:GO:0031643 GO:GO:0014040 HOVERGEN:HBG092134 IPI:IPI00365891
EMBL:BC098796 UniGene:Rn.205881 STRING:Q4G034 PhosphoSite:Q4G034
UCSC:RGD:1309381 InParanoid:Q4G034 Genevestigator:Q4G034
Uniprot:Q4G034
Length = 401
Score = 89 (36.4 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
+RLEFLGDA+++++ + HL+ G L R+A+V N A LA + + A
Sbjct: 181 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK-A 239
Query: 884 HGSDLCHEVE 893
+L H ++
Sbjct: 240 VSPELFHVID 249
Score = 73 (30.8 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 34/107 (31%), Positives = 48/107 (44%)
Query: 667 KRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIP--VL 724
KRT+ DK A+E + ++ S A+S R G D+ + IP +
Sbjct: 76 KRTSRDKASYPAQENSSSQQKSPSG---SCAAAVSPRS--SAGK--DLEYGCLKIPPRCM 128
Query: 725 ICHLRFHRSLNVL-------EDRIQYKFQNR-YLLQLALTHPSYREN 763
H ++LN L E +I Y F+N+ YLLQ A TH SY N
Sbjct: 129 FDHPDAEKTLNHLISGFENFEKKINYIFKNKAYLLQ-AFTHASYHYN 174
Score = 70 (29.7 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 891 EVELKHAMANCFEALMGALFLDGG--IDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQ 948
++E+ AM + FE+L GA+++D G ++V QV+ ++ E P L E
Sbjct: 280 DIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANVPRSPVRELLEM 339
Query: 949 EPD 951
EP+
Sbjct: 340 EPE 342
>POMBASE|SPCC188.13c [details] [associations]
symbol:dcr1 "dicer" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005720 "nuclear heterochromatin"
evidence=IC] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006396 "RNA processing" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0031048 "chromatin silencing by small RNA"
evidence=TAS] [GO:0034613 "cellular protein localization"
evidence=IMP] [GO:0035389 "establishment of chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051570 "regulation of histone H3-K9
methylation" evidence=IMP] [GO:0051983 "regulation of chromosome
segregation" evidence=IMP] [GO:0090052 "regulation of chromatin
silencing at centromere" evidence=IMP] InterPro:IPR000999
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR006935
Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 Pfam:PF04851 PROSITE:PS00517
PROSITE:PS50142 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490
SMART:SM00535 PomBase:SPCC188.13c GO:GO:0005829 GO:GO:0005524
GO:GO:0007059 GO:GO:0034613 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 GO:GO:0003723
GO:GO:0007049 GO:GO:0004386 GO:GO:0031048 GO:GO:0090052
GO:GO:0051570 GO:GO:0030422 GO:GO:0004540 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0051983 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PIR:T39130 RefSeq:NP_588215.2 PDB:2L6M PDBsum:2L6M
ProteinModelPortal:Q09884 STRING:Q09884 EnsemblFungi:SPCC188.13c.1
GeneID:2538930 KEGG:spo:SPCC188.13c OMA:RMCLICN OrthoDB:EOG4PRWZS
NextBio:20800107 GO:GO:0035389 Uniprot:Q09884
Length = 1374
Score = 143 (55.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 68/228 (29%), Positives = 99/228 (43%)
Query: 815 ATESNITHN-ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKR 873
+ ES + + +RLEF GD ++ SI +F FPD +E L R I+ N +L +A
Sbjct: 920 SAESQLNFDYDRLEFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNLYKVAID 979
Query: 874 IGLEDFMLYA---------HG-----SDLCHEVELKHA----MANCFEALMGALFLDGGI 915
L + L +G SD C L+ +A+ EA +GA LD G+
Sbjct: 980 CELPKYALSTPLEIRHWCPYGFQKSTSDKCRYAVLQKLSVKRIADMVEASIGACLLDSGL 1039
Query: 916 DVADQVFSSVLYKDNEV-RFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSG 974
D A ++ S+ ++ + +W Y L D R Q P Y+E + G
Sbjct: 1040 DSALKICKSLSVGLLDISNWDEWNNY--FDLNTYA-DSLRN--VQFPYSS---YIEETIG 1091
Query: 975 VIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
F + +LL F SM + Q+LEFLGD VL I YLY
Sbjct: 1092 YSFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLY 1139
>UNIPROTKB|B3KRG4 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AL356017
EMBL:AL390254 UniGene:Hs.87889 HGNC:HGNC:17098 ChiTaRS:DICER1
EMBL:AK091513 IPI:IPI01025259 SMR:B3KRG4 STRING:B3KRG4
Ensembl:ENST00000556045 UCSC:uc001ydy.1 HOVERGEN:HBG092134
Uniprot:B3KRG4
Length = 820
Score = 101 (40.6 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
ERLE LGD+ ++ + +LF +PD EG L+ R+ V N +L L K+ GL M+
Sbjct: 211 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMV 268
Score = 89 (36.4 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
+RLEFLGDA+++++ + HL+ G L R+A+V N A LA + + A
Sbjct: 600 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK-A 658
Query: 884 HGSDLCHEVE 893
+L H ++
Sbjct: 659 VSPELFHVID 668
Score = 82 (33.9 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 23/73 (31%), Positives = 34/73 (46%)
Query: 950 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 1009
PD D+ + L+ + E F + L + FT S Y +T QRLEFLG
Sbjct: 551 PDADKTL---NHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTIT-DCYQRLEFLG 606
Query: 1010 DTVLQLITSDYLY 1022
D +L + + +LY
Sbjct: 607 DAILDYLITKHLY 619
Score = 79 (32.9 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 34/108 (31%), Positives = 50/108 (46%)
Query: 667 KRTAEDKRRLAAKEQRLQEMRTNSKMKR-GVTVAISSRGFYRTGIMCDMVQHAMLIP--V 723
KRT +K +E NS+ K V+ A +S R+ ++ D + IP
Sbjct: 493 KRTDREKALCPTREN------FNSQQKNLSVSCAAASVASSRSSVLKDSEYGCLKIPPRC 546
Query: 724 LICHLRFHRSLNVL-------EDRIQYKFQNR-YLLQLALTHPSYREN 763
+ H ++LN L E +I Y+F+N+ YLLQ A TH SY N
Sbjct: 547 MFDHPDADKTLNHLISGFENFEKKINYRFKNKAYLLQ-AFTHASYHYN 593
Score = 66 (28.3 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 891 EVELKHAMANCFEALMGALFLDGGIDVAD--QVFSSVLYKDNEVRFKQWMYYPQHPLQEQ 948
++E+ AM + FE+L GA+++D G+ + QV+ ++ E P L E
Sbjct: 699 DIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEM 758
Query: 949 EPD 951
EP+
Sbjct: 759 EPE 761
Score = 41 (19.5 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 897 AMANCFEALMGALFLDGGIDVADQVF 922
++A+C EAL+G G + A Q+F
Sbjct: 456 SIADCVEALLGCYLTSCG-ERAAQLF 480
>WB|WBGene00000939 [details] [associations]
symbol:dcr-1 species:6239 "Caenorhabditis elegans"
[GO:0004525 "ribonuclease III activity" evidence=IEA;IMP;IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016891
"endoribonuclease activity, producing 5'-phosphomonoesters"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0040010 "positive regulation
of growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006952 "defense response" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0010467 "gene expression"
evidence=IMP] [GO:0007126 "meiosis" evidence=IMP] [GO:0045132
"meiotic chromosome segregation" evidence=IMP] [GO:0005829
"cytosol" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IMP] [GO:0040034 "regulation of development,
heterochronic" evidence=IMP] [GO:0031050 "dsRNA fragmentation"
evidence=IDA] [GO:0035262 "gonad morphogenesis" evidence=IMP]
[GO:0004530 "deoxyribonuclease I activity" evidence=IDA]
[GO:0000737 "DNA catabolic process, endonucleolytic" evidence=IDA]
[GO:0006401 "RNA catabolic process" evidence=IDA] [GO:0006309
"apoptotic DNA fragmentation" evidence=IGI] [GO:0031054 "pre-miRNA
processing" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005829 GO:GO:0005524 GO:GO:0002009
GO:GO:0018991 GO:GO:0040010 GO:GO:0006952 GO:GO:0002119
GO:GO:0046872 GO:GO:0040011 GO:GO:0006401 GO:GO:0040035
GO:GO:0003725 GO:GO:0045132 SUPFAM:SSF101690 GO:GO:0031054
GO:GO:0030422 GO:GO:0040034 GO:GO:0006309 GO:GO:0016075
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:FO081380
GO:GO:0008026 GO:GO:0035262 eggNOG:COG1111 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 PIR:S44849 RefSeq:NP_498761.2
DIP:DIP-25340N IntAct:P34529 MINT:MINT-1040079 STRING:P34529
PaxDb:P34529 EnsemblMetazoa:K12H4.8 GeneID:176138
KEGG:cel:CELE_K12H4.8 UCSC:K12H4.8 CTD:42693 WormBase:K12H4.8
GeneTree:ENSGT00510000046789 HOGENOM:HOG000022395 InParanoid:P34529
NextBio:891290 GO:GO:0004530 Uniprot:P34529
Length = 1910
Score = 98 (39.6 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
ER E +GD+ ++F T+ +L+H D EG L+ R+ V N +L L K++G+ ++
Sbjct: 1413 ERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEVSNCNLYRLGKKLGIPQLIV 1470
Score = 86 (35.3 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 25/63 (39%), Positives = 31/63 (49%)
Query: 962 LLKQLQY--LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSD 1019
L +Q Q+ LE G F L + FT S N G QRLEFLGD VL + +
Sbjct: 1637 LWQQFQFTQLEEKIGYRFKERAYLVQAFTHASY-INNRVTGCYQRLEFLGDAVLDYMITR 1695
Query: 1020 YLY 1022
YL+
Sbjct: 1696 YLF 1698
Score = 61 (26.5 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 459 NQEFIFEGFSLFSHHPLEKLPTCKVI--RFNIQYTIVYIEEKVP-NGFTVKDTELFFNYL 515
N E+ F GF S + K+P V + N++ ++ +K +++ +LF NYL
Sbjct: 744 NYEYCF-GF--LSAKEIPKIPPFPVFLRQGNMKVRLIVAPKKTTVTAAQLQEIQLFHNYL 800
Query: 516 FHEILEL 522
F ++L++
Sbjct: 801 FTQVLQM 807
Score = 53 (23.7 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 404 KSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFI 463
++RR+G R+ I E + A C+ D + ++ ++ +S + +N P IE D+ F
Sbjct: 493 RARRAGSRYVITVEEKDTAACDSDLKDFQQIE--KILLS--RHRTVNNP--IEDDSDRFE 546
Query: 464 -FEGFSLFSHHPLEK 477
F+ S + +EK
Sbjct: 547 EFDVDSQMEPYVVEK 561
Score = 46 (21.3 bits), Expect = 0.00085, Sum P(3) = 0.00085
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 79 QVDNLP--STNVSNQSNPITPQTSTGRTNQYNRWTICPAPMCQISPTQLHLKHPLA 132
++ N P S VSN S PQ S + + N ++ + QI +L HP++
Sbjct: 951 RIQNQPRRSRTVSNSSTSNIPQASASDSKESNT-SVPHSSQRQILVPELMDIHPIS 1005
>UNIPROTKB|A4RHU9 [details] [associations]
symbol:DCL2 "Dicer-like protein 2" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS00690 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00490 SMART:SM00535 GO:GO:0005524
GO:GO:0046872 GO:GO:0051607 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 OrthoDB:EOG4JWZNK
RefSeq:XP_003715365.1 GeneID:2683150 KEGG:mgr:MGG_12357
Uniprot:A4RHU9
Length = 1485
Score = 140 (54.3 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 64/225 (28%), Positives = 100/225 (44%)
Query: 815 ATESNITHNERLEFLGDAVVEF---IT-SIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 870
++ +T+ ER+EFLGDAV++ +T + + H FP EG L+ + +V N L
Sbjct: 1015 SSAGRLTNYERVEFLGDAVLKLGAAVTCATNNLH-FP---EGYLSLLKDRLVSNSRLCKA 1070
Query: 871 AKRIGLEDFMLYAHGS-----DLCHEVE--------LKHAMANCFEALMGALFLDGGIDV 917
A +GL+ F++ S ++ E +A+ EAL+GA +++GG+
Sbjct: 1071 ATALGLDQFIITRQYSLKQWRNMLTAPEPPTNTRKMSSKTLADVTEALIGAAYIEGGMSK 1130
Query: 918 ADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIF 977
A + S ++ NE +W L E + + PL L LE G F
Sbjct: 1131 ALRCISLMI--PNE----RW-----RSLDESRAVLYQVALNDIPLPSTLGPLEELLGYSF 1179
Query: 978 NHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
N LL T S S +RLEFLGD+VL + L+
Sbjct: 1180 NKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARLF 1224
>UNIPROTKB|A7LFZ6 [details] [associations]
symbol:DCL4 "Endoribonuclease Dicer homolog 4"
species:39947 "Oryza sativa Japonica Group" [GO:0009944 "polarity
specification of adaxial/abaxial axis" evidence=IMP] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=IDA] [GO:0010492 "maintenance of shoot apical meristem
identity" evidence=IMP] [GO:0048608 "reproductive structure
development" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010492 GO:GO:0010267 EMBL:AL606607 EMBL:AP008210
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009944
GO:GO:0008026 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 HOGENOM:HOG000083706
EMBL:EU009924 EMBL:AB353922 EMBL:AK066586 RefSeq:NP_001053278.1
UniGene:Os.27988 GeneID:4336362 KEGG:osa:4336362 Gramene:A7LFZ6
ProtClustDB:CLSN2694920 GO:GO:0048608 Uniprot:A7LFZ6
Length = 1657
Score = 112 (44.5 bits), Expect = 0.00079, Sum P(3) = 0.00079
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLA 871
+RLEFLGDAV+E++ + +L+ +PDI+ G + R+ V N LA+ A
Sbjct: 1249 QRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAA 1296
Score = 98 (39.6 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
ER E LGDA ++++ H F + ++EG L R+ +V N HL L+ R L+ ++
Sbjct: 1043 ERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYI 1099
Score = 92 (37.4 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 38/129 (29%), Positives = 59/129 (45%)
Query: 895 KHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDR 954
+ +A+ E+L+GA ++GG A F+ + + +V F Y L D
Sbjct: 1154 RKVIADVVESLIGAFLVEGGFKAA---FAFLHWIGIDVDFNNPALY--RVL-------DS 1201
Query: 955 QWVEQSPL-LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVL 1013
+ S + + LE G F H LL + F S ++ + G QRLEFLGD VL
Sbjct: 1202 SSINLSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPS--FSQHSGGCYQRLEFLGDAVL 1259
Query: 1014 QLITSDYLY 1022
+ + + YLY
Sbjct: 1260 EYVITSYLY 1268
Score = 66 (28.3 bits), Expect = 0.00079, Sum P(3) = 0.00079
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 737 LEDRIQYKFQNRYLLQLALTHPSYRENFG 765
LE+ I YKF+++ LL A HPS+ ++ G
Sbjct: 1217 LEELIGYKFKHKGLLLQAFVHPSFSQHSG 1245
Score = 50 (22.7 bits), Expect = 0.00079, Sum P(3) = 0.00079
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 869 HLAKRIG-LEDFMLYAHGS-DLCHEVELKHAMANCFEALMGALFLDGGIDV 917
HL I E ++ ++ DL E A+ + E+ +GA+ LD G ++
Sbjct: 1311 HLTSAISKFEMYVKLSNSEKDLLEEPACPKALGDIVESCIGAVLLDSGFNL 1361
>TAIR|locus:2149259 [details] [associations]
symbol:DCL4 "dicer-like 4" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006396
"RNA processing" evidence=ISS;RCA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010050 "vegetative phase change"
evidence=RCA;IMP] [GO:0010267 "production of ta-siRNAs involved in
RNA interference" evidence=RCA;IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA;IMP] [GO:0051607
"defense response to virus" evidence=RCA;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IGI;RCA] [GO:0009616 "virus induced gene silencing"
evidence=IGI;RCA] [GO:0010599 "production of lsiRNA involved in RNA
interference" evidence=IMP] [GO:0006353 "DNA-dependent
transcription, termination" evidence=IMP] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0016569 "covalent chromatin
modification" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00035 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170
Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358
SMART:SM00490 SMART:SM00535 SMART:SM00949 InterPro:IPR014720
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010599 GO:GO:0010267 GO:GO:0010050 EMBL:AF296825
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0010216 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ118423 IPI:IPI00521227
RefSeq:NP_197532.3 UniGene:At.31201 PDB:2KOU PDBsum:2KOU
ProteinModelPortal:P84634 SMR:P84634 MINT:MINT-6948367
STRING:P84634 PaxDb:P84634 PRIDE:P84634 EnsemblPlants:AT5G20320.1
GeneID:832154 KEGG:ath:AT5G20320 TAIR:At5g20320
HOGENOM:HOG000083706 InParanoid:P84634 OMA:RNLLHNR PhylomeDB:P84634
ProtClustDB:CLSN2702253 EvolutionaryTrace:P84634
Genevestigator:P84634 GO:GO:0006353 GO:GO:0009616 Uniprot:P84634
Length = 1702
Score = 120 (47.3 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
+RLEFLGDAV++++ + + F VFP ++ G L R+ V N+ LA++A L+ F L+
Sbjct: 1327 QRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRF-LFC 1385
Query: 884 HGSDLCHEV 892
L HEV
Sbjct: 1386 ESIYL-HEV 1393
Score = 102 (41.0 bits), Expect = 0.00058, Sum P(3) = 0.00058
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 880
ERLE LGDA ++F S HLF ++EG L R+ +V N +L LA + L+ ++
Sbjct: 1119 ERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIKKNLQVYI 1175
Score = 87 (35.7 bits), Expect = 0.00058, Sum P(3) = 0.00058
Identities = 40/136 (29%), Positives = 57/136 (41%)
Query: 890 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWM--YYPQHPLQE 947
H K +A+ EAL+GA +D G A V+F +W+ LQ
Sbjct: 1227 HHWLYKKTIADVVEALVGAFLVDSGFKGA-------------VKFLKWIGVNVDFESLQV 1273
Query: 948 QEPD-GDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLE 1006
Q+ R+++ + L+ LE F H LL + F S Y G QRLE
Sbjct: 1274 QDACIASRRYLPLTTR-NNLETLENQLDYKFLHKGLLVQAFIHPS--YNRHGGGCYQRLE 1330
Query: 1007 FLGDTVLQLITSDYLY 1022
FLGD VL + + Y +
Sbjct: 1331 FLGDAVLDYLMTSYFF 1346
Score = 74 (31.1 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 715 VQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFG 765
VQ A + L +L LE+++ YKF ++ LL A HPSY + G
Sbjct: 1273 VQDACIASRRYLPLTTRNNLETLENQLDYKFLHKGLLVQAFIHPSYNRHGG 1323
Score = 45 (20.9 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 898 MANCFEALMGALFLDGGIDVADQVFSSVL 926
+ + E+ +GALFLD G ++ + V++ +L
Sbjct: 1420 LGDLVESCLGALFLDCGFNL-NHVWTMML 1447
Score = 41 (19.5 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 433 KLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVI----RFNI 488
K+Y+YR +S + I ++E Q + L H + L + K + N+
Sbjct: 335 KVYYYRSALSDASQSTIRYENMLEDIKQRCLASLKLLIDTHQTQTLLSMKRLLKRSHDNL 394
Query: 489 QYTIV 493
YT++
Sbjct: 395 IYTLL 399
Score = 39 (18.8 bits), Expect = 0.00021, Sum P(4) = 0.00021
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 594 ADGVKGMIIVKPGSKPCAMRVDQLDRESETNDIYPDAVHFGSRPLQLCF 642
AD V + + G K + +RE N++ LQ CF
Sbjct: 191 ADSVNFKVAIHCGGKRIVKSHSEWEREIAANEVLVMTPQILLHNLQHCF 239
>UNIPROTKB|Q6TUI4 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0016442 "RNA-induced
silencing complex" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HSSP:P66666 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AY386968 IPI:IPI00715122
RefSeq:NP_976235.1 UniGene:Bt.45343 UniGene:Bt.89150
ProteinModelPortal:Q6TUI4 SMR:Q6TUI4 STRING:Q6TUI4 PRIDE:Q6TUI4
GeneID:337871 KEGG:bta:337871 CTD:23405 HOGENOM:HOG000001567
NextBio:20812451 Uniprot:Q6TUI4
Length = 1923
Score = 89 (36.4 bits), Expect = 0.00015, Sum P(4) = 0.00015
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
+RLEFLGDA+++++ + HL+ G L R+A+V N A LA + + A
Sbjct: 1703 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK-A 1761
Query: 884 HGSDLCHEVE 893
+L H ++
Sbjct: 1762 VSPELFHVID 1771
Score = 89 (36.4 bits), Expect = 0.00015, Sum P(4) = 0.00015
Identities = 34/107 (31%), Positives = 48/107 (44%)
Query: 667 KRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIP--VL 724
KRT +K +E + + S G A S G YR ++ D+ + IP +
Sbjct: 1596 KRTDREKAMCPTRENFTSQQKNLS----GSRAAASGAG-YRASVLKDLEYGCLKIPPRCM 1650
Query: 725 ICHLRFHRSLNVL-------EDRIQYKFQNR-YLLQLALTHPSYREN 763
H R+L L E +I Y+F+N+ YLLQ A TH SY N
Sbjct: 1651 FDHPEADRTLRHLISGFENFEKKINYRFKNKAYLLQ-AFTHASYHYN 1696
Score = 66 (28.3 bits), Expect = 0.00015, Sum P(4) = 0.00015
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 891 EVELKHAMANCFEALMGALFLDGGIDVAD--QVFSSVLYKDNEVRFKQWMYYPQHPLQEQ 948
++E+ AM + FE+L GA+++D G+ + QV+ ++ E P L E
Sbjct: 1802 DIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEM 1861
Query: 949 EPD 951
EP+
Sbjct: 1862 EPE 1864
Score = 39 (18.8 bits), Expect = 0.00015, Sum P(4) = 0.00015
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 63 HKILVSKSFD-CKTGTTQVDNLPSTNVSNQSNPITPQTSTGRTNQYN 108
+K L + S+D Q ++L N Q P+ P TS N YN
Sbjct: 1181 NKSLANGSYDLANRDFCQGNHL---NYYKQEIPVQPTTSYPIQNLYN 1224
>TIGR_CMR|SPO_3198 [details] [associations]
symbol:SPO_3198 "ribonuclease III" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 HOGENOM:HOG000246809 OMA:RACELPR
TIGRFAMs:TIGR02191 RefSeq:YP_168401.1 ProteinModelPortal:Q5LNK5
GeneID:3195258 KEGG:sil:SPO3198 PATRIC:23379843
ProtClustDB:CLSK934087 Uniprot:Q5LNK5
Length = 225
Score = 109 (43.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 32/100 (32%), Positives = 51/100 (51%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
N+RLEFLGD V+ + + L D EG LA A+V+ + A +A+ L +L
Sbjct: 41 NQRLEFLGDRVLGLVMATALLEADKDATEGQLAPRFNALVRKETCAEVAREADL-GAVLK 99
Query: 883 AHGSDLCHEVELKHAM-ANCFEALMGALFLDGGIDVADQV 921
S++ K A+ + EA++ A++ DGG A+ V
Sbjct: 100 LGRSEMMSGGRRKLALLGDAMEAVIAAVYRDGGFAAAEAV 139
Score = 53 (23.7 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 728 LRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHAR 772
++ + E R+ Y F+ LL ALTH S + T D+ R
Sbjct: 1 MKLSAEMKAFEARLGYSFERPELLVRALTHGSISSS--TRQDNQR 43
>UNIPROTKB|F1MCQ5 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00715122 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:DAAA02053090
Ensembl:ENSBTAT00000017080 ArrayExpress:F1MCQ5 Uniprot:F1MCQ5
Length = 1920
Score = 89 (36.4 bits), Expect = 0.00024, Sum P(4) = 0.00024
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
+RLEFLGDA+++++ + HL+ G L R+A+V N A LA + + A
Sbjct: 1700 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK-A 1758
Query: 884 HGSDLCHEVE 893
+L H ++
Sbjct: 1759 VSPELFHVID 1768
Score = 87 (35.7 bits), Expect = 0.00024, Sum P(4) = 0.00024
Identities = 34/107 (31%), Positives = 48/107 (44%)
Query: 667 KRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIP--VL 724
KRT +K +E + + S G A S G YR ++ D+ + IP +
Sbjct: 1593 KRTDREKAMCPTRENFTSQQKNLS----GSRAAASGAG-YRASVLKDLEYGCLKIPPRCM 1647
Query: 725 ICHLRFHRSLNVL-------EDRIQYKFQNR-YLLQLALTHPSYREN 763
H R+L L E +I Y+F+N+ YLLQ A TH SY N
Sbjct: 1648 FDHPDADRTLRHLISGFENFEKKINYRFKNKAYLLQ-AFTHASYHYN 1693
Score = 66 (28.3 bits), Expect = 0.00024, Sum P(4) = 0.00024
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 891 EVELKHAMANCFEALMGALFLDGGIDVAD--QVFSSVLYKDNEVRFKQWMYYPQHPLQEQ 948
++E+ AM + FE+L GA+++D G+ + QV+ ++ E P L E
Sbjct: 1799 DIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEM 1858
Query: 949 EPD 951
EP+
Sbjct: 1859 EPE 1861
Score = 39 (18.8 bits), Expect = 0.00024, Sum P(4) = 0.00024
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 63 HKILVSKSFD-CKTGTTQVDNLPSTNVSNQSNPITPQTSTGRTNQYN 108
+K L + S+D Q ++L N Q P+ P TS N YN
Sbjct: 1181 NKSLANGSYDLANRDFCQGNHL---NYYKQEIPVQPTTSYPIQNLYN 1224
>UNIPROTKB|Q9UPY3 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0009791 "post-embryonic development" evidence=IEA] [GO:0010070
"zygote asymmetric cell division" evidence=IEA] [GO:0019827 "stem
cell maintenance" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0021889 "olfactory bulb
interneuron differentiation" evidence=IEA] [GO:0021987 "cerebral
cortex development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0035198 "miRNA binding" evidence=IEA] [GO:0035264
"multicellular organism growth" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045069
"regulation of viral genome replication" evidence=IEA] [GO:0045664
"regulation of neuron differentiation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048536 "spleen development"
evidence=IEA] [GO:0048713 "regulation of oligodendrocyte
differentiation" evidence=IEA] [GO:0048754 "branching morphogenesis
of an epithelial tube" evidence=IEA] [GO:0051225 "spindle assembly"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051726 "regulation of cell cycle" evidence=IEA] [GO:0055013
"cardiac muscle cell development" evidence=IEA] [GO:0060119 "inner
ear receptor cell development" evidence=IEA] [GO:0060576
"intestinal epithelial cell development" evidence=IEA] [GO:0070173
"regulation of enamel mineralization" evidence=IEA] [GO:0071335
"hair follicle cell proliferation" evidence=IEA] [GO:2000630
"positive regulation of miRNA metabolic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0031054 "pre-miRNA processing"
evidence=IDA] [GO:0030423 "targeting of mRNA for destruction
involved in RNA interference" evidence=IMP] [GO:0030422 "production
of siRNA involved in RNA interference" evidence=IDA] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0048812 "neuron projection morphogenesis" evidence=ISS]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=ISS] [GO:0031643 "positive regulation of myelination"
evidence=ISS] [GO:0021675 "nerve development" evidence=ISS]
[GO:0014040 "positive regulation of Schwann cell differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=ISS] [GO:0010626 "negative regulation of Schwann cell
proliferation" evidence=ISS] Reactome:REACT_71 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005829 GO:GO:0005524
GO:GO:0010070 GO:GO:0006915 GO:GO:0021987 GO:GO:0043066
GO:GO:0045664 EMBL:CH471061 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0010626 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 eggNOG:COG1111 KO:K11592
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:23405
HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W EMBL:AB028449 EMBL:HM595745
EMBL:AJ132261 EMBL:AB023145 EMBL:AL356017 EMBL:AL390254
EMBL:BC150287 IPI:IPI00219036 IPI:IPI00977554 RefSeq:NP_001182502.1
RefSeq:NP_001258211.1 RefSeq:NP_085124.2 RefSeq:NP_803187.1
UniGene:Hs.87889 PDB:2EB1 PDBsum:2EB1 ProteinModelPortal:Q9UPY3
SMR:Q9UPY3 DIP:DIP-29664N IntAct:Q9UPY3 MINT:MINT-1957525
STRING:Q9UPY3 PhosphoSite:Q9UPY3 DMDM:257051056 PaxDb:Q9UPY3
PRIDE:Q9UPY3 Ensembl:ENST00000343455 Ensembl:ENST00000393063
Ensembl:ENST00000526495 Ensembl:ENST00000527414
Ensembl:ENST00000541352 GeneID:23405 KEGG:hsa:23405 UCSC:uc001ydv.2
GeneCards:GC14M095552 HGNC:HGNC:17098 HPA:HPA000694 MIM:138800
MIM:601200 MIM:606241 neXtProt:NX_Q9UPY3 Orphanet:276399
Orphanet:99916 Orphanet:284343 PharmGKB:PA38437 HOVERGEN:HBG107811
InParanoid:Q9UPY3 OMA:FLEYDQE PhylomeDB:Q9UPY3 BRENDA:3.1.26.3
ChiTaRS:DICER1 EvolutionaryTrace:Q9UPY3 GenomeRNAi:23405
NextBio:45577 ArrayExpress:Q9UPY3 Bgee:Q9UPY3 CleanEx:HS_DICER1
Genevestigator:Q9UPY3 GermOnline:ENSG00000100697 GO:GO:0071335
GO:GO:0060576 GO:GO:0021889 GO:GO:0032290 GO:GO:0031643
GO:GO:0014040 GO:GO:0070173 GO:GO:0048713 Uniprot:Q9UPY3
Length = 1922
Score = 89 (36.4 bits), Expect = 0.00037, Sum P(3) = 0.00037
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
+RLEFLGDA+++++ + HL+ G L R+A+V N A LA + + A
Sbjct: 1702 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK-A 1760
Query: 884 HGSDLCHEVE 893
+L H ++
Sbjct: 1761 VSPELFHVID 1770
Score = 79 (32.9 bits), Expect = 0.00037, Sum P(3) = 0.00037
Identities = 34/108 (31%), Positives = 50/108 (46%)
Query: 667 KRTAEDKRRLAAKEQRLQEMRTNSKMKR-GVTVAISSRGFYRTGIMCDMVQHAMLIP--V 723
KRT +K +E NS+ K V+ A +S R+ ++ D + IP
Sbjct: 1595 KRTDREKALCPTREN------FNSQQKNLSVSCAAASVASSRSSVLKDSEYGCLKIPPRC 1648
Query: 724 LICHLRFHRSLNVL-------EDRIQYKFQNR-YLLQLALTHPSYREN 763
+ H ++LN L E +I Y+F+N+ YLLQ A TH SY N
Sbjct: 1649 MFDHPDADKTLNHLISGFENFEKKINYRFKNKAYLLQ-AFTHASYHYN 1695
Score = 66 (28.3 bits), Expect = 0.00037, Sum P(3) = 0.00037
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 891 EVELKHAMANCFEALMGALFLDGGIDVAD--QVFSSVLYKDNEVRFKQWMYYPQHPLQEQ 948
++E+ AM + FE+L GA+++D G+ + QV+ ++ E P L E
Sbjct: 1801 DIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEM 1860
Query: 949 EPD 951
EP+
Sbjct: 1861 EPE 1863
>ZFIN|ZDB-GENE-030131-3445 [details] [associations]
symbol:dicer1 "Dicer1, Dcr-1 homolog (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=ISS;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0070883 "pre-miRNA binding" evidence=IDA] [GO:0021591
"ventricular system development" evidence=IGI;IMP] [GO:0035279
"mRNA cleavage involved in gene silencing by miRNA" evidence=IGI]
[GO:0035195 "gene silencing by miRNA" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720
ZFIN:ZDB-GENE-030131-3445 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0035279 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
GO:GO:0021591 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HSSP:P66666 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
eggNOG:COG0571 GO:GO:0070883 CTD:23405 HOGENOM:HOG000001567
EMBL:AL772219 EMBL:AY386319 IPI:IPI00933004 RefSeq:NP_001154925.1
UniGene:Dr.78137 STRING:Q6TV19 Ensembl:ENSDART00000045881
Ensembl:ENSDART00000109826 GeneID:324724 KEGG:dre:324724
InParanoid:Q6TV19 OrthoDB:EOG4JDH5W NextBio:20808937
ArrayExpress:Q6TV19 Bgee:Q6TV19 Uniprot:Q6TV19
Length = 1865
Score = 101 (40.6 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
ERLE LGD+ ++ + +LF +PD EG L+ R+ V N +L L K+ GL M+
Sbjct: 1295 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMV 1352
Score = 93 (37.8 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 39/138 (28%), Positives = 61/138 (44%)
Query: 897 AMANCFEALMGALFLDGGIDVADQVFS-----SVLYKDN-------EVRFKQWMYYPQHP 944
++A+C EAL+G G + A Q+F VL + E+++ W+ P
Sbjct: 1534 SIADCVEALLGCYLTSCG-ERAAQLFLCSLGLKVLPPEKQSSGGSAELQYG-WLKIPPRC 1591
Query: 945 LQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQR 1004
+ E PD +R + L+ E F + L + FT S Y +T QR
Sbjct: 1592 MFEH-PDAERTL---NHLISGFLNFESKINYTFKNKAYLLQAFTHASYHYNTIT-DCYQR 1646
Query: 1005 LEFLGDTVLQLITSDYLY 1022
LEFLGD +L + + +LY
Sbjct: 1647 LEFLGDAILDYLITKHLY 1664
Score = 39 (18.8 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 20/98 (20%), Positives = 41/98 (41%)
Query: 36 NEPSSSALQFNTVDVKQPPPGFSQSCNHKI------LVSKSFDC----KTGT-TQVDNLP 84
++ + +A + +++V QPP G + + K+ + + DC GT D+LP
Sbjct: 1114 SDSNHTAPESCSMEVSQPPEGAPNTPDEKLETLTLPVTDLNKDCFPNLPNGTQADSDDLP 1173
Query: 85 STNVSNQSNPITPQTSTGRTNQYNRWTICPAPMCQISP 122
+ Q + + P T ++ P+P + P
Sbjct: 1174 HRSDVCQCSQLGPLERDLSTQTTTSVSVRPSPAGEPQP 1211
>SGD|S000004852 [details] [associations]
symbol:RNT1 "Nuclear dsRNA-specific ribonuclease (RNase III)"
species:4932 "Saccharomyces cerevisiae" [GO:0060237 "regulation of
fungal-type cell wall organization" evidence=IGI;IMP] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0034963 "box C/D snoRNA processing"
evidence=IMP] [GO:0034964 "box H/ACA snoRNA processing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009303
"rRNA transcription" evidence=IMP] [GO:0006364 "rRNA processing"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0006379 "mRNA cleavage" evidence=IMP;IDA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA;IDA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030847 "termination of RNA
polymerase II transcription, exosome-dependent"
evidence=IMP;IDA;IPI] [GO:0034473 "U1 snRNA 3'-end processing"
evidence=IMP] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IMP] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 SGD:S000004852
InterPro:IPR014720 GO:GO:0005654 GO:GO:0005730 Gene3D:3.30.160.20
EMBL:BK006946 GO:GO:0003725 GO:GO:0016075 GO:GO:0009303
GO:GO:0060237 GO:GO:0006325 EMBL:Z49939 GO:GO:0006364 GO:GO:0006379
EMBL:Z48756 EMBL:U27016 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 BRENDA:3.1.26.3 PANTHER:PTHR11207
GO:GO:0034475 GO:GO:0034476 GO:GO:0030847 KO:K03685 PIR:S56053
RefSeq:NP_013966.1 PDB:1T4L PDB:1T4N PDB:1T4O PDB:2LBS PDB:2LUP
PDB:2LUQ PDBsum:1T4L PDBsum:1T4N PDBsum:1T4O PDBsum:2LBS
PDBsum:2LUP PDBsum:2LUQ ProteinModelPortal:Q02555 SMR:Q02555
DIP:DIP-4298N IntAct:Q02555 MINT:MINT-567072 STRING:Q02555
PaxDb:Q02555 EnsemblFungi:YMR239C GeneID:855280 KEGG:sce:YMR239C
CYGD:YMR239c HOGENOM:HOG000000766 OMA:VIRARVF OrthoDB:EOG4JT3FD
EvolutionaryTrace:Q02555 NextBio:978911 Genevestigator:Q02555
GermOnline:YMR239C GO:GO:0034473 Uniprot:Q02555
Length = 471
Score = 123 (48.4 bits), Expect = 0.00047, P = 0.00047
Identities = 32/96 (33%), Positives = 51/96 (53%)
Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLED--- 878
HNERLEFLGD+++ + ++ +++ FPD EG L+T R +V N+ + + +
Sbjct: 236 HNERLEFLGDSILNSVMTLIIYNKFPDYSEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLK 295
Query: 879 --FMLYAHGSDLCHEVELKHAMANCFEALMGALFLD 912
F L S+ +LK A+ FEA +G L D
Sbjct: 296 TNFDLKDENSNF-QNGKLK-LYADVFEAYIGGLMED 329
>UNIPROTKB|E9PU15 [details] [associations]
symbol:Dicer1 "Protein Dicer1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 RGD:1309381 GO:GO:0005524 GO:GO:0010070 GO:GO:0006915
GO:GO:0021987 GO:GO:0043066 GO:GO:0045664 GO:GO:0051225
GO:GO:0030324 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607
GO:GO:0000122 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791
GO:GO:0048536 GO:GO:0003725 GO:GO:0035264 GO:GO:0035116
GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 IPI:IPI00365891
Ensembl:ENSRNOT00000014405 Uniprot:E9PU15
Length = 1908
Score = 89 (36.4 bits), Expect = 0.00057, Sum P(3) = 0.00057
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 824 ERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA 883
+RLEFLGDA+++++ + HL+ G L R+A+V N A LA + + A
Sbjct: 1688 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK-A 1746
Query: 884 HGSDLCHEVE 893
+L H ++
Sbjct: 1747 VSPELFHVID 1756
Score = 73 (30.8 bits), Expect = 0.00057, Sum P(3) = 0.00057
Identities = 34/107 (31%), Positives = 48/107 (44%)
Query: 667 KRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIP--VL 724
KRT+ DK A+E + ++ S A+S R G D+ + IP +
Sbjct: 1583 KRTSRDKASYPAQENSSSQQKSPSG---SCAAAVSPRS--SAGK--DLEYGCLKIPPRCM 1635
Query: 725 ICHLRFHRSLNVL-------EDRIQYKFQNR-YLLQLALTHPSYREN 763
H ++LN L E +I Y F+N+ YLLQ A TH SY N
Sbjct: 1636 FDHPDAEKTLNHLISGFENFEKKINYIFKNKAYLLQ-AFTHASYHYN 1681
Score = 70 (29.7 bits), Expect = 0.00057, Sum P(3) = 0.00057
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 891 EVELKHAMANCFEALMGALFLDGG--IDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQ 948
++E+ AM + FE+L GA+++D G ++V QV+ ++ E P L E
Sbjct: 1787 DIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANVPRSPVRELLEM 1846
Query: 949 EPD 951
EP+
Sbjct: 1847 EPE 1849
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1022 915 0.00090 122 3 11 22 0.38 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 53
No. of states in DFA: 628 (67 KB)
Total size of DFA: 483 KB (2225 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 76.96u 0.10s 77.06t Elapsed: 00:00:40
Total cpu time: 76.98u 0.10s 77.08t Elapsed: 00:00:45
Start: Thu Aug 15 11:30:57 2013 End: Thu Aug 15 11:31:42 2013