RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14776
(1022 letters)
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 2.00A {Thermotoga maritima} SCOP:
a.149.1.1 d.50.1.1
Length = 252
Score = 139 bits (353), Expect = 3e-37
Identities = 46/207 (22%), Positives = 74/207 (35%), Gaps = 64/207 (30%)
Query: 729 RFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYR-ENFGTNPDHARNSLSNCGVRQPEYGD 787
+ + + F+N LL AL H SY E
Sbjct: 16 SERKIVEEFQKETGINFKNEELLFRALCHSSYANEQ------------------------ 51
Query: 788 RRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFP 847
A ++ NE+LEFLGDAV+E L+ +P
Sbjct: 52 -------------------------NQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYP 86
Query: 848 DIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHA-------MAN 900
+ E G LA ++A + LA +++++ L F+ G E K +A+
Sbjct: 87 EAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKG-------EEKTGGRDRDSILAD 139
Query: 901 CFEALMGALFLDGGIDVADQVFSSVLY 927
FEAL+ A++LD G + ++F
Sbjct: 140 AFEALLAAIYLDQGYEKIKELFEQEFE 166
Score = 66.1 bits (162), Expect = 6e-12
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 964 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG-----SNQRLEFLGDTVLQLITS 1018
K ++ + +G+ F + LL R S G SN++LEFLGD VL+L
Sbjct: 19 KIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVC 78
Query: 1019 DYLY 1022
+ LY
Sbjct: 79 EILY 82
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic
protein structure initiative; 2.10A {Mycobacterium
tuberculosis}
Length = 242
Score = 126 bits (319), Expect = 9e-33
Identities = 56/207 (27%), Positives = 77/207 (37%), Gaps = 71/207 (34%)
Query: 731 HRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRI 790
RS L D + + LL LALTH S + E G
Sbjct: 4 IRSRQPLLDALGVDLPDE-LLSLALTHR---------------SYAY------ENGGLP- 40
Query: 791 HFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIE 850
NERLEFLGDAV+ + LFH PD
Sbjct: 41 -------------------------------TNERLEFLGDAVLGLTITDALFHRHPDRS 69
Query: 851 EGGLATYRAAIVQNQHLAHLAKRI---GLEDFMLYAHGSDLCHEVELKHA-------MAN 900
EG LA RA++V Q LA +A+R+ GL +L G E +A+
Sbjct: 70 EGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRG-------EANTGGADKSSILAD 122
Query: 901 CFEALMGALFLDGGIDVADQVFSSVLY 927
E+L+GA++L G++ A +V +
Sbjct: 123 GMESLLGAIYLQHGMEKAREVILRLFG 149
Score = 66.8 bits (164), Expect = 3e-12
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 964 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
+ Q L + GV LL+ T RS Y N L +N+RLEFLGD VL L +D L+
Sbjct: 5 RSRQPLLDALGVDLPD-ELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALF 62
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A
{Vanderwaltozyma polyspora}
Length = 341
Score = 125 bits (315), Expect = 2e-31
Identities = 39/205 (19%), Positives = 64/205 (31%), Gaps = 53/205 (25%)
Query: 730 FHRSLNVLEDRIQY-KFQNRYLLQLALTHPSY-RENFGTNPDHARNSLSNCGVRQPEYGD 787
F S ++ I+Y + L LA H S+ N N
Sbjct: 81 FKDSNTDVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQL------------- 127
Query: 788 RRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFP 847
NERLEFLGD+ + + S ++ FP
Sbjct: 128 ----------------------------------SNERLEFLGDSWLGALVSYIVYTRFP 153
Query: 848 DIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAM-ANCFEALM 906
EG L+ + +IV N +L + ++ + + + A+C EA +
Sbjct: 154 SANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIATPTRVVKDKMSKRYADCVEAYI 213
Query: 907 GALFLDG---GIDVADQVFSSVLYK 928
GAL +D + + K
Sbjct: 214 GALVIDRFGTEFLDIKEWLEELSEK 238
Score = 60.2 bits (146), Expect = 1e-09
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 13/72 (18%)
Query: 958 EQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG-------SNQRLEFLGD 1010
+ + ++Y L F +S N L SN+RLEFLGD
Sbjct: 84 SNTDVDMFIKYPV------VYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGD 137
Query: 1011 TVLQLITSDYLY 1022
+ L + S +Y
Sbjct: 138 SWLGALVSYIVY 149
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference,
endonucleolytic cleavage, hydrolase/RNA complex; 1.70A
{Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A
2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A
1jfz_A 1rc5_A
Length = 221
Score = 120 bits (304), Expect = 5e-31
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
S H E LEFLGDA+V F L P+ EG L+ +A ++ + LA+++ L
Sbjct: 31 SKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELH 90
Query: 878 DFMLYAHGSDLCHEVELKHAM-ANCFEALMGALFLDGGIDVA 918
F+ G ++ + + FEAL A+++D G D
Sbjct: 91 KFIRIKRG-------KINETIIGDVFEALWAAVYIDSGRDAN 125
Score = 63.3 bits (155), Expect = 2e-11
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 964 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
K L+ LE G F LL + T S + LEFLGD ++ D L
Sbjct: 2 KMLEQLEKKLGYTFKDKSLLEKALTHVSYSKKE----HYETLEFLGDALVNFFIVDLLV 56
Score = 48.7 bits (117), Expect = 3e-06
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 732 RSLNVLEDRIQYKFQNRYLLQLALTHPSY 760
+ L LE ++ Y F+++ LL+ ALTH SY
Sbjct: 2 KMLEQLEKKLGYTFKDKSLLEKALTHVSY 30
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A
{Vanderwaltozyma polyspora}
Length = 246
Score = 121 bits (304), Expect = 7e-31
Identities = 38/204 (18%), Positives = 65/204 (31%), Gaps = 51/204 (25%)
Query: 730 FHRSLNVLEDRIQY-KFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDR 788
F S ++ I+Y + L LA H S+ D + L
Sbjct: 81 FKDSNTDVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQL------------- 127
Query: 789 RIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPD 848
NERLEFLGD+ + + S ++ FP
Sbjct: 128 ---------------------------------SNERLEFLGDSWLGALVSYIVYTRFPS 154
Query: 849 IEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAM-ANCFEALMG 907
EG L+ + +IV N +L + ++ + + + A+C +A +G
Sbjct: 155 ANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIATPTRVVKDKMSKRYADCVQAYIG 214
Query: 908 ALFLD---GGIDVADQVFSSVLYK 928
AL +D + + K
Sbjct: 215 ALVIDRFGTEFLDIKEWLEELSEK 238
Score = 58.7 bits (142), Expect = 1e-09
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 976 IFNHIRLLARVFTTRSMGYTNLTLG-------SNQRLEFLGDTVLQLITSDYLY 1022
+ L F +S N L SN+RLEFLGD+ L + S +Y
Sbjct: 96 VVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVY 149
>3o2r_A Ribonuclease III; structural genomics, center for structural
genomics of infec diseases, csgid, nuclease domain,
ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni
subsp} PDB: 3o2r_B*
Length = 170
Score = 116 bits (294), Expect = 3e-30
Identities = 36/104 (34%), Positives = 58/104 (55%)
Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
+NERLEFLGDAV++ + +LFH F EG L+ RAA+V + A +A + L
Sbjct: 55 KKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLG 114
Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQV 921
DF+L + + E +++ EA++GA+ L+ G + A +
Sbjct: 115 DFILMSVAEENNGGKEKPSILSDALEAIIGAIHLEAGFEFAKTI 158
Score = 65.3 bits (160), Expect = 3e-12
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 952 GDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDT 1011
G QS +K ++ LE S F LL T +S + +N+RLEFLGD
Sbjct: 14 GTENLYFQSNAMKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY----NNERLEFLGDA 69
Query: 1012 VLQLITSDYLY 1022
VL L+ +YL+
Sbjct: 70 VLDLVVGEYLF 80
Score = 47.2 bits (113), Expect = 4e-06
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 732 RSLNVLEDRIQYKFQNRYLLQLALTHPSY 760
+++ LE + Y+F+++ LL ALTH S+
Sbjct: 26 KNIEKLEQSLTYEFKDKNLLIHALTHKSF 54
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862,
csgid, structura genomics; 2.21A {Campylobacter jejuni
subsp}
Length = 248
Score = 118 bits (297), Expect = 8e-30
Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 14/111 (12%)
Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
+NERLEFLGDAV++ + +LFH F EG L+ RAA+V + A +A + L
Sbjct: 55 KKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLG 114
Query: 878 DFMLYAHGSDLCHEVELKHA-------MANCFEALMGALFLDGGIDVADQV 921
DF+L + E + +++ EA++GA+ L+ G + A +
Sbjct: 115 DFILMSVA-------EENNGGKEKPSILSDALEAIIGAIHLEAGFEFAKTI 158
Score = 69.9 bits (172), Expect = 2e-13
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 940 YPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTL 999
+ H G QS +K ++ LE S F LL T +S +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSNAMKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY--- 58
Query: 1000 GSNQRLEFLGDTVLQLITSDYLY 1022
+N+RLEFLGD VL L+ +YL+
Sbjct: 59 -NNERLEFLGDAVLDLVVGEYLF 80
Score = 48.0 bits (115), Expect = 6e-06
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 732 RSLNVLEDRIQYKFQNRYLLQLALTHPSY 760
+++ LE + Y+F+++ LL ALTH S+
Sbjct: 26 KNIEKLEQSLTYEFKDKNLLIHALTHKSF 54
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding,
endonuclease, HEL hydrolase, nucleotide-binding,
phosphoprotein, RN binding; HET: MSE; 1.68A {Mus
musculus} PDB: 3c4t_A 2eb1_A
Length = 265
Score = 112 bits (282), Expect = 1e-27
Identities = 37/167 (22%), Positives = 66/167 (39%), Gaps = 37/167 (22%)
Query: 815 ATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI 874
+ +RLEFLGDA+++++ + HL+ G L R+A+V N A LA +
Sbjct: 42 HYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKY 101
Query: 875 GLEDFMLYAHGS--------------------------------DLCHEVELKHAMANCF 902
+ + ++E+ AM + F
Sbjct: 102 DYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIF 161
Query: 903 EALMGALFLDGGID--VADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 947
E+L GA+++D G+ V QV+ ++ E K P+ P++E
Sbjct: 162 ESLAGAIYMDSGMSLEVVWQVYYPMMQPLIE---KFSANVPRSPVRE 205
Score = 70.9 bits (174), Expect = 2e-13
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 950 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 1009
PD ++ + L+ + E F + L + FT S Y +T QRLEFLG
Sbjct: 2 PDAEK---TLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTIT-DCYQRLEFLG 57
Query: 1010 DTVLQLITSDYLY 1022
D +L + + +LY
Sbjct: 58 DAILDYLITKHLY 70
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase;
3.00A {Giardia intestinalis} PDB: 2ffl_A
Length = 756
Score = 118 bits (297), Expect = 2e-27
Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 4/112 (3%)
Query: 820 ITH--NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
+T ++LE LGDA ++ ++HL + P + EG L R + N L L KR
Sbjct: 642 LTPHVYQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKRFPSV 701
Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 929
+ + FEA++ A+ L G + A +
Sbjct: 702 VSEV--IIESHPKIQPDSKVYGDTFEAILAAILLACGEEAAGAFVREHVLPQ 751
Score = 116 bits (291), Expect = 1e-26
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
S+ +RLE LGDAV+ FI + L +FPD G L + +V+N+ L +L + +GL
Sbjct: 329 SHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLP 388
Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLD-GGIDVADQVFSSVLYK 928
+++ V A+ +E ++G++F GI ++ + L
Sbjct: 389 QLAEFSNN-----LVAKSKTWADMYEEIVGSIFTGPNGIYGCEEFLAKTLMS 435
Score = 65.0 bits (158), Expect = 9e-11
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 9/82 (10%)
Query: 942 QHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT-LG 1000
L + PD R + +Y ++G+ + R G ++
Sbjct: 281 ICALDKSFPDCGR--------IGGERYFAITAGLRLDQGRGRGLAGWRTPFGPFGVSHTD 332
Query: 1001 SNQRLEFLGDTVLQLITSDYLY 1022
QRLE LGD VL I + L
Sbjct: 333 VFQRLELLGDAVLGFIVTARLL 354
Score = 62.7 bits (152), Expect = 5e-10
Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 22/97 (22%)
Query: 937 WMYYPQHPLQEQ-----------EPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLAR 985
P P+ + E G + + + + L SG I IRLL
Sbjct: 582 LTETPTGPVASKVLALYEKILAYESSGGSKHIAAQTVSRSLAV-PIPSGTIPFLIRLLQI 640
Query: 986 VFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
T Q+LE LGD L+ + +L+
Sbjct: 641 ALTPHV----------YQKLELLGDAFLKCSLALHLH 667
Score = 35.7 bits (82), Expect = 0.081
Identities = 11/30 (36%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 731 HRSLNVLEDRIQYKFQNRYLLQLALTHPSY 760
RSL V LLQ+ALT Y
Sbjct: 619 SRSLAV-PIPSGTIPFLIRLLQIALTPHVY 647
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 76.4 bits (187), Expect = 4e-14
Identities = 96/635 (15%), Positives = 185/635 (29%), Gaps = 177/635 (27%)
Query: 228 NLDKWRMN-NCSSEREMTEKFNTLAAMEADQIIEEEKK-------IWT-RSAPADLY--Y 276
D + N +C ++M + + L+ E D II + WT S ++ +
Sbjct: 25 FEDAFVDNFDCKDVQDMPK--SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 277 TKRTEDDSYE-CTQKTRTICDEFESVIQNFVSVKE----SKPQF-DYTANRKKIKRTNRK 330
+ +Y+ +T + + + ++ ++ F Y +R +
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY----L 138
Query: 331 KIKRKCSHCASNPTVS------SG-----SESSSDSSSGEEDAEEDN--WMMELQLKQNH 377
K+++ V SG + + + W L LK +
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK--VQCKMDFKIFW---LNLKNCN 193
Query: 378 PDRLHPELWFNDKGEMNDGPLCR------CSSKSRRSGIRHNIYAGEDE--QAFCNPDTN 429
E+ + L S S I+ I++ + E + +
Sbjct: 194 SPETVLEM-------LQK--LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 430 NADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVI---RF 486
N L+ V+ + + F+L +CK++ RF
Sbjct: 245 NC----------------LL----VLLNVQNAKAWNAFNL----------SCKILLTTRF 274
Query: 487 -------NIQYTIVYIEEKVPNGFTVKDT-ELFFNYLFHEILEL---------VDLDLKS 529
+ T + T + L YL +L L + +
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 530 ANNKDG-----------CPQF-HIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEK 577
+ +DG C + I+ + L+ E M+ L F S I
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA--EYRKMFDRLSVFPPS-AH-IPTI 390
Query: 578 LAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDIYPD-------- 629
L LS W D +++ K + + IY +
Sbjct: 391 L------LSLI-WFDVIKSDVMVVVNKLHKYSLVEK-QPKESTISIPSIYLELKVKLENE 442
Query: 630 -AVH---FGSRPLQLCFAGSPDFQKLWK--------GYVKLRHLV-ANKPKRTAE----- 671
A+H + F D + G+ HL P+R
Sbjct: 443 YALHRSIVDHYNIPKTFDSD-DLIPPYLDQYFYSHIGH----HLKNIEHPERMTLFRMVF 497
Query: 672 -DKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRF 730
D R L EQ+++ T + + FY+ I + ++ L+ + L F
Sbjct: 498 LDFRFL---EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI---LDF 551
Query: 731 HRSLNVLEDRIQYKFQNRYLLQLALTHPS---YRE 762
+ E+ I K+ + LL++AL + E
Sbjct: 552 LPKIE--ENLICSKYTD--LLRIALMAEDEAIFEE 582
Score = 64.5 bits (156), Expect = 2e-10
Identities = 94/637 (14%), Positives = 173/637 (27%), Gaps = 194/637 (30%)
Query: 59 QSCNHKIL------VSKSFDCKTGTTQVDNLPSTNVSNQS-NPITPQTSTGRTNQYNR-- 109
Q IL +FDCK V ++P + +S + + I + R
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCK----DVQDMPKSILSKEEIDHIIMSKD--AVSGTLRLF 68
Query: 110 WTICPAPMCQISPTQLHLKHPLAGQTNIMSRSMHRDDESNQRRNRSSSRSKNNGYSHRSE 169
WT+ + Q ++ + + N + S +++
Sbjct: 69 WTLL------------------SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ------ 104
Query: 170 NSKSSPTRTETNLKRRRSRSKSRSESKSRSEVPRQACARRSRSRSRILSPKR-------- 221
P+ +R R + ++ ++ V R + R L P +
Sbjct: 105 -----PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 222 -SG------EALSNLDK---------W-RMNNCSSEREMTEKFNTL-------AAMEADQ 257
SG + + W + NC+S + E L +D
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 258 IIEEEKKI-WTRSAPADLYYTKRTE------DD----------SYEC----TQKTRTICD 296
+ +I ++ L +K E + + C T + + + D
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 297 EFESVIQNFVSVKESKPQFDYTANRK---KIKRTNRKKIKRKCSHCASNPTVSSG-SESS 352
+ +S+ + K + + R+ +NP S +ES
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV--LTTNPRRLSIIAESI 337
Query: 353 SDSSSGEEDAEEDNW----------MMELQLKQNHPDRLH---------PE--------- 384
D A DNW ++E L P P
Sbjct: 338 RD-----GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 385 --LWFNDKGE--------MNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADK- 433
+WF+ ++ L K I +IY N
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-PSIY-----LELKVKLENEYALH 446
Query: 434 ---LYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQY 490
+ HY + P F + D + +S HH ++ F + +
Sbjct: 447 RSIVDHYNI----PKTFDSDDLIPPYLDQ--YF---YSHIGHHLKNIEHPERMTLFRMVF 497
Query: 491 T-IVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVREL 549
++E+K ++ +N + L L D P++ R V +
Sbjct: 498 LDFRFLEQK------IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE---RLVNAI 548
Query: 550 KDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKD-DL 585
D F+P I E L SK DL
Sbjct: 549 LD------------------FLPKIEENLICSKYTDL 567
Score = 50.6 bits (120), Expect = 3e-06
Identities = 87/651 (13%), Positives = 165/651 (25%), Gaps = 216/651 (33%)
Query: 488 IQYT---IVYI-EEKVPNGFTVKDTE-----LFFNYLFHEILELVD--------LDLKSA 530
QY I+ + E+ + F KD + + I+ D +
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 531 NNKDGCPQF----------HIMPRFVRELKDNGKELL-------PMYRVLEFFTSSFVPV 573
++ +F +M E + +Y + F V
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS- 132
Query: 574 ISEKLAKSKDDLSTYEWQDFAD-GVKGMIIVKPGS-KPCAMRVDQLDRESETNDIYPDAV 631
+ K + L E + + + G+ GS K + +D + +
Sbjct: 133 RLQPYLKLRQAL--LELRPAKNVLIDGV----LGSGKTW-VALDVC-LSYKVQCKMDFKI 184
Query: 632 H---FGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRT 688
+ C + + L K ++ ++ ++ K R+ + + L+
Sbjct: 185 FWLNLKN-----CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR--- 236
Query: 689 NSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLED----RIQYK 744
L+ + L VL + +
Sbjct: 237 -----------------------------------LLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 745 FQNR--------------YLLQLALTHPSYRE-NFGTNPDHARNSLSNC-GVRQ---PE- 784
F +L TH S + PD ++ L R P
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 785 ---------------YGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFL 829
D + N + + L I+ S L L
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--------S-------LNVL 366
Query: 830 GDAVVEFITSIHLFHVFPD---IEEGGLATYRAA--------IVQNQHLAHLAKRIGLED 878
A E+ VFP I L+ +V H L ++ ++
Sbjct: 367 EPA--EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK-QPKE 423
Query: 879 FMLYAHG--SDLCHEVELK---HA-MANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV 932
+ +L ++E + H + + + D DQ Y
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ------Y----- 472
Query: 933 RFKQWMYYPQHPLQEQEPDG----------DRQWVEQ------------SPLLKQLQYLE 970
+ + H L+ E D +++EQ +L LQ L+
Sbjct: 473 ----FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 971 YSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 1021
+ I ++ R+ N L+FL LI S Y
Sbjct: 529 FYKPYICDNDPKYERLV--------------NAILDFLPKIEENLICSKYT 565
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 3e-09
Identities = 102/670 (15%), Positives = 189/670 (28%), Gaps = 285/670 (42%)
Query: 451 KPTVIEHDNQEFIF--------------EGFSLFSHHPLEKL-----PTCK---VIRFNI 488
+P + H + E + E F+ P E PT V +F +
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF-L 65
Query: 489 QYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRE 548
Y +E F ++L L L +F ++
Sbjct: 66 GYVSSLVEPSKVGQFD-------------QVLNLC-LT-----------EFEN--CYLE- 97
Query: 549 LKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDF-ADGVKGMIIVKPGS 607
G + + + + L K+K+ + Y A + +P
Sbjct: 98 ----GND-------IHALAAKLLQENDTTLVKTKELIKNY----ITARIMAK----RPFD 138
Query: 608 KPCAMRVDQLDRESETND--IYPDAVHFGSRPLQLCFAGSPD--F---QKLWKGYVKLRH 660
K L R + + A+ FG Q G+ D F + L++ Y
Sbjct: 139 KK---SNSALFRAVGEGNAQLV--AI-FGG---Q----GNTDDYFEELRDLYQTY---HV 182
Query: 661 LVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQ---- 716
LV + K +AE L E+ + + + + G+ ++++
Sbjct: 183 LVGDLIKFSAE----------TLSEL---------IRTTLDAEKVFTQGL--NILEWLEN 221
Query: 717 ------HAML--IPV---LICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSY---RE 762
L IP+ LI ++QLA H Y +
Sbjct: 222 PSNTPDKDYLLSIPISCPLIG-----------------------VIQLA--H--YVVTAK 254
Query: 763 NFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITH 822
G P R+ L G +G+ + + +A +
Sbjct: 255 LLGFTPGELRSYLK--GA-------------TGHSQGL-----VTAVA---IAETDSWE- 290
Query: 823 NERLEFLGDAVVEFITSIHLFHV-------FP-----------DIEEG-GLATYRAAI-- 861
F +V + IT LF + +P +E G+ + +I
Sbjct: 291 ----SFF-VSVRKAITV--LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 862 -----VQ------NQHLA-----HLAKRIGLEDFMLYAHGSDLCH-EVELKHAMANCFEA 904
VQ N HL ++ G ++ ++ L + L+ A A
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA----- 398
Query: 905 LMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYY-----PQHPLQEQEPDGDRQWVEQ 959
G+ DQ S + + + +++F + P H
Sbjct: 399 -------PSGL---DQ--SRIPFSERKLKFS--NRFLPVASPFH---------------- 428
Query: 960 SPLLKQ-----LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRL--EFLGDTV 1012
S LL + L + V FN + V+ T GS+ R+ + + +
Sbjct: 429 SHLLVPASDLINKDLV-KNNVSFNAKDIQIPVYDTFD--------GSDLRVLSGSISERI 479
Query: 1013 LQLITSDYLY 1022
+ I +
Sbjct: 480 VDCIIRLPVK 489
Score = 41.6 bits (97), Expect = 0.001
Identities = 54/368 (14%), Positives = 104/368 (28%), Gaps = 152/368 (41%)
Query: 507 DTELFFNYLFHEILELVDLDLKSANNKDGCPQ---FHIMPRFVRELKDNGKELLPMYRVL 563
D Y F IL++V NN P H + +++N Y +
Sbjct: 1650 DNHFKDTYGF-SILDIV------INN----PVNLTIHFGGEKGKRIREN-------YSAM 1691
Query: 564 EFFTSSFVPVISEKLAKSKD-DLSTYEWQDFADGVKGMI---------IVKPGSKPCAMR 613
F T + +EK+ K + ++Y ++ KG++ + M
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFR----SEKGLLSATQFTQPALT-------LME 1740
Query: 614 VDQLDR-ESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRH-------LVANK 665
+ +S+ G P FAG H L +
Sbjct: 1741 KAAFEDLKSK-----------GLIPADATFAG---------------HSLGEYAALAS-- 1772
Query: 666 PKRTA-----EDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAML 720
A E + RG+T+ ++ M +
Sbjct: 1773 ---LADVMSIESLVEVVFY--------------RGMTMQVAVPRDELGRSNYGM---IAI 1812
Query: 721 IPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGV 780
P + +L + +R+ + +L+++ N+ N
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGK--RTGWLVEIV--------NY------------NVEN 1850
Query: 781 RQPEY---GDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLE--FLGDAVVE 835
+Q Y GD R ++T+ N+++ + + I L+ + V
Sbjct: 1851 QQ--YVAAGD---------LRALDTVTNVLNFIKLQ-----KID-IIELQKSLSLEEVEG 1893
Query: 836 FITSIHLF 843
HLF
Sbjct: 1894 -----HLF 1896
Score = 40.8 bits (95), Expect = 0.003
Identities = 36/221 (16%), Positives = 68/221 (30%), Gaps = 59/221 (26%)
Query: 748 RYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIM 807
+ + A H +++ +G S+ + + P + IHF + + I + M
Sbjct: 1643 QDVWNRADNH--FKDTYGF-------SILDIVINNPV--NLTIHFGGEKGKRIRENYSAM 1691
Query: 808 --------SKLGRKVATESNITHNERLEFLGDAVV----EFITSIHLFHV----FPDIEE 851
K+ E N H+ F + + +F T L + F D++
Sbjct: 1692 IFETIVDGKLKTEKIFKEINE-HSTSYTFRSEKGLLSATQF-TQPALTLMEKAAFEDLKS 1749
Query: 852 GGLAT------------YRAAIVQNQHLAHLAKRIGLEDFM--LYAHGSDLCHEVE---- 893
GL Y A LA LA + +E + ++ G + V
Sbjct: 1750 KGLIPADATFAGHSLGEYAA-------LASLADVMSIESLVEVVFYRGMTMQVAVPRDEL 1802
Query: 894 --LKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV 932
+ M + A F + V V + +
Sbjct: 1803 GRSNYGMIAINPGRVAASF---SQEALQYVVERVGKRTGWL 1840
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU
initiative, midwest center for structural genomics,
MCSG, U function; 2.15A {Bacillus cereus} SCOP:
a.149.1.1
Length = 138
Score = 47.2 bits (112), Expect = 2e-06
Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 13/118 (11%)
Query: 826 LEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDF------ 879
L ++GDAV E HL + L + V + A + + F
Sbjct: 15 LAYMGDAVYEQYIRYHLLQKGK-VRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEE 73
Query: 880 MLYAHGSDLCHEVELKHA------MANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
+ G + K+ + FEAL+G L + D++ + E
Sbjct: 74 AVLRRGRNANSGTVPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKAIAVLEE 131
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics,
PSI, protein STR initiative; 2.60A {Fusobacterium
nucleatum subsp}
Length = 137
Score = 41.8 bits (98), Expect = 2e-04
Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 12/116 (10%)
Query: 826 LEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIV----QNQHLAHLAKRIGLEDFML 881
L FLGDA+ E I +++ L Y A V Q+ + + E ++
Sbjct: 18 LAFLGDAIWELE--IRKYYLQFGYNIPTLNKYVKAKVNAKYQSLIYKKIINDLDEEFKVI 75
Query: 882 YAHGSDLCHEVELKHA------MANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
+ + + A EA++GA++L + ++ + V+ + E
Sbjct: 76 GKRAKNSNIKTFPRSCTVMEYKEATALEAIIGAMYLLKKEEEIKKIINIVIKGELE 131
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM,
splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo
sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Length = 437
Score = 36.7 bits (84), Expect = 0.038
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 1/86 (1%)
Query: 139 SRSMHRDDESNQRRNRSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKSR 198
RS +D + +R +RS R++ + E E +
Sbjct: 279 ERSKDKDRDRKRRSSRSRERARRE-RERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGP 337
Query: 199 SEVPRQACARRSRSRSRILSPKRSGE 224
R R R R S + E
Sbjct: 338 DGPDGPEEKGRDRDRERRRSHRSERE 363
Score = 36.4 bits (83), Expect = 0.048
Identities = 7/77 (9%), Positives = 15/77 (19%)
Query: 139 SRSMHRDDESNQRRNRSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKSR 198
+ S + + + +R + R + R
Sbjct: 311 GGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDR 370
Query: 199 SEVPRQACARRSRSRSR 215
+ R R R
Sbjct: 371 DRDRDREHKRGERGSER 387
Score = 35.2 bits (80), Expect = 0.10
Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 3/84 (3%)
Query: 139 SRSMHRDDESNQRRNRSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKSR 198
RS R + ++ R R SSRS+ R + + S +
Sbjct: 275 RRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGD---MAEPSEAGDAPPDDGP 331
Query: 199 SEVPRQACARRSRSRSRILSPKRS 222
+ R +R
Sbjct: 332 PGELGPDGPDGPEEKGRDRDRERR 355
Score = 32.1 bits (72), Expect = 1.1
Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 4/85 (4%)
Query: 139 SRSMHRDDESNQ-RRNRSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKS 197
R R +E + + + + P + ++ R R + R S
Sbjct: 300 RRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHR 359
Query: 198 RSEVPRQACARRSRSRSRILSPKRS 222
R+ R R R R KR
Sbjct: 360 SERERRR---DRDRDRDRDREHKRG 381
Score = 31.0 bits (69), Expect = 2.0
Identities = 5/77 (6%), Positives = 16/77 (20%)
Query: 139 SRSMHRDDESNQRRNRSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKSR 198
+ + + R R + + E + + + + +R S
Sbjct: 333 GELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEA 392
Query: 199 SEVPRQACARRSRSRSR 215
+
Sbjct: 393 RGGGGGQDNGLEGLGND 409
Score = 31.0 bits (69), Expect = 2.3
Identities = 10/77 (12%), Positives = 17/77 (22%)
Query: 139 SRSMHRDDESNQRRNRSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKSR 198
R D + G + + +RRRS R + R
Sbjct: 309 LRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDR 368
Query: 199 SEVPRQACARRSRSRSR 215
+ + R
Sbjct: 369 DRDRDRDREHKRGERGS 385
Score = 30.6 bits (68), Expect = 3.3
Identities = 14/77 (18%), Positives = 24/77 (31%)
Query: 139 SRSMHRDDESNQRRNRSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKSR 198
S + ++ R R R S R + R + + E
Sbjct: 224 GPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKD 283
Query: 199 SEVPRQACARRSRSRSR 215
+ R+ + RSR R+R
Sbjct: 284 KDRDRKRRSSRSRERAR 300
Score = 29.4 bits (65), Expect = 7.0
Identities = 18/89 (20%), Positives = 31/89 (34%)
Query: 136 NIMSRSMHRDDESNQRRNRSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSES 195
NI ++R S ++ E + S R + +RR R S
Sbjct: 207 NIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRS 266
Query: 196 KSRSEVPRQACARRSRSRSRILSPKRSGE 224
+SR + R+ RS+ + R + S
Sbjct: 267 RSRDKEERRRSRERSKDKDRDRKRRSSRS 295
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.1 bits (80), Expect = 0.054
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 21/81 (25%)
Query: 216 ILSPKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADL- 274
I R + ++ KWR E + L ++A + ++ W A DL
Sbjct: 74 IAQADRLTQEPESIRKWR------EEQRKR----LQELDAAS--KVMEQEWREKAKKDLE 121
Query: 275 -YYTKRTEDDSYECTQKTRTI 294
+ +++E Q +
Sbjct: 122 EWNQRQSE-------QVEKNK 135
Score = 31.3 bits (70), Expect = 0.93
Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 18/81 (22%)
Query: 254 EADQIIEEEKKI--WTRSAPADLYYTKRTED-DSYECTQKTRTICDEFESVIQNFVSVKE 310
+AD++ +E + I W KR ++ D+ + ++ + ++ +
Sbjct: 76 QADRLTQEPESIRKWREE------QRKRLQELDAASKVMEQEWR-EKAKKDLEEWNQ--- 125
Query: 311 SKPQFDYTANRKKIKRTNRKK 331
+ +K K NR
Sbjct: 126 -----RQSEQVEKNKINNRIA 141
Score = 30.1 bits (67), Expect = 2.5
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 942 QHPLQEQEPDGDRQWVE-QSPLLKQLQ 967
Q QEP+ R+W E Q L++L
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELD 102
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 32.9 bits (75), Expect = 0.70
Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 6/95 (6%)
Query: 138 MSRSMHRDDESNQRRNRSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKS 197
+ + + +++S + + K +RS++R
Sbjct: 491 FLDKLGLSRSPIGKAMFEIRDYSSRDGNNKSYDYDDDSEISFRGNKNYNNRSQNRDYDDE 550
Query: 198 RSEVPRQACARRSRSRSRILSPKRSGEALSNLDKW 232
R RRS SRS ++ + N + +
Sbjct: 551 PFR--RSNNNRRSFSRSN----DKNNYSSRNSNIY 579
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 30.3 bits (68), Expect = 2.3
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 4 HHMSSSHSSRGSCSFSSPMSEDVKPNIQQMALNE---PSSSALQFNTVDVKQPPP 55
+ + SC+ V + A N +S + F+ V +P P
Sbjct: 52 ADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNP 106
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.4 bits (68), Expect = 2.4
Identities = 6/34 (17%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 92 SNPITPQTSTGRTNQYNRWTICPAPMCQISPTQL 125
+ + + R N CP C++ P ++
Sbjct: 3 TRESIDKRAGRRGPNLNIVLTCPE--CKVYPPKI 34
Score = 29.2 bits (65), Expect = 4.5
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 13/74 (17%)
Query: 318 TANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNH 377
+ +++ +R I C C P + S G+ L L
Sbjct: 6 SIDKRAGRRGPNLNIVLTCPECKVYPP-----KIVERFSEGDVVCALCG----LVLSDKL 56
Query: 378 PDRLHPELW--FND 389
D E W F++
Sbjct: 57 VDT-RSE-WRTFSN 68
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding
Pro RNA complex; 2.60A {Thermus thermophilus} PDB:
3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A
3hjf_A
Length = 685
Score = 30.7 bits (69), Expect = 3.1
Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 5/100 (5%)
Query: 434 LYHYRVTVSPPTNFLINKPTVIEHDNQ---EFIFEGFSLFSHHPLEKLPTCKVIRFNIQY 490
+ V + PP P + + + + G L S P E L + Q
Sbjct: 26 PWRLEVVLDPPPGREEVYPLLAQVARRAGGVTVRMGDGLASWSPPEVLVLEGTLARMGQT 85
Query: 491 TIVYIEEKVPNGFTVKDTEL--FFNYLFHEILELVDLDLK 528
+ K KD + L +L+ L+
Sbjct: 86 YAYRLYPKGRRPLDPKDPGERSVLSALARRLLQERLRRLE 125
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 29.7 bits (66), Expect = 5.7
Identities = 19/138 (13%), Positives = 47/138 (34%), Gaps = 10/138 (7%)
Query: 198 RSEVPRQACARRSRSRSRILSPKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQ 257
R + + + S+ S + + EA N + E EM + F + +
Sbjct: 299 RRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQ--KKEEEMRQMFVQRVKEKEAE 356
Query: 258 IIEEEKKIWTRSAPADLYYTKRTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDY 317
+ E EK++ + K+ D + + + + + F K +
Sbjct: 357 LKEAEKELHEKFD-----RLKKLHQDEKKKLEDKKK---SLDDEVNAFKQRKTAAELLQS 408
Query: 318 TANRKKIKRTNRKKIKRK 335
++ +T ++ ++K
Sbjct: 409 QGSQAGGSQTLKRDKEKK 426
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 29.4 bits (65), Expect = 6.1
Identities = 17/109 (15%), Positives = 34/109 (31%), Gaps = 17/109 (15%)
Query: 110 WTICPAPMCQISPTQLHLKHPLAGQTNIMSRSMHRDDESNQRRNRSSSRSKNNGYSHRSE 169
WT P + + L++ + N + + E+ +RR + S+S + E
Sbjct: 323 WTGKPVSYYLHTIDRTILENYFSSLKN---PKLREEQEAARRRQQRESKSNAATPTKGPE 379
Query: 170 NSKSSPTRT-----------ETNLKRRRS---RSKSRSESKSRSEVPRQ 204
+ P ++ S K + K R R+
Sbjct: 380 GKVAGPADAPMDSGAEEEKAGAATVKKPSPSKARKKKLNKKGRKMAGRK 428
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel,
structural genomics, protein structure initiati 2; 2.81A
{Galdieria sulphuraria}
Length = 258
Score = 29.2 bits (66), Expect = 7.1
Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 5/50 (10%)
Query: 514 YLFHEILELVDLDLKSANNKDGCPQFHIM-----PRFVRELKDNGKELLP 558
YLF+ + + LD ++ V + G +
Sbjct: 168 YLFNYMGQPTPLDFVEQACYGDANGVSMLFHYLTKEQVCTAHEKGLSVTV 217
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding,
HOST-virus interaction, metal-binding, nucleus,
receptor, transcription, transcription regulation,
zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo
sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Length = 419
Score = 29.3 bits (65), Expect = 8.4
Identities = 14/176 (7%), Positives = 45/176 (25%), Gaps = 15/176 (8%)
Query: 103 RTNQYNRWTICPAPMCQISPTQLHL-------KHPLAGQTNIMSRSMHRDDESNQRRNRS 155
RT + C+I + K G ++ R + +
Sbjct: 79 RTIRLKLIYDRCDLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIR---FGRMPQAEKEKL 135
Query: 156 SSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKSRSEVPRQACARRSRSRSR 215
+ ++ E++ +S +++++++ +
Sbjct: 136 LAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMN 195
Query: 216 ILSPKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAP 271
L ++ + + + + + +I E + +S P
Sbjct: 196 SLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRSVEAVQEITE-----YAKSIP 246
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease
inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A
{Leishmania major}
Length = 751
Score = 29.2 bits (66), Expect = 8.5
Identities = 12/90 (13%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 384 ELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSP 443
E+ D + N R G+R+++ N ++++ ++P
Sbjct: 296 EVHLLDLRKGNAHNTLEIVRP-REKGVRYDVQMHGTSHLVI---LTNEGGAVNHKLLIAP 351
Query: 444 PTNFLINKPTVIEHDNQEFIFEGFSLFSHH 473
+++H F+ E ++ S++
Sbjct: 352 RGQPSDWSHVLVDHSEDVFM-ESIAVRSNY 380
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.390
Gapped
Lambda K H
0.267 0.0608 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,309,942
Number of extensions: 916606
Number of successful extensions: 1791
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1745
Number of HSP's successfully gapped: 68
Length of query: 1022
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 919
Effective length of database: 3,825,930
Effective search space: 3516029670
Effective search space used: 3516029670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.9 bits)