RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14776
(1022 letters)
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus
[TaxId: 1396]}
Length = 127
Score = 86.6 bits (214), Expect = 1e-20
Identities = 20/116 (17%), Positives = 36/116 (31%), Gaps = 13/116 (11%)
Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
+ L ++GDAV E HL L + V + A + + F+
Sbjct: 8 SLALAYMGDAVYEQYIRYHLLQKGKV-RPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTE 66
Query: 883 AHGSDLCHEVELK------------HAMANCFEALMGALFLDGGIDVADQVFSSVL 926
+ L + + FEAL+G L + D++ +
Sbjct: 67 EEEAVLRRGRNANSGTVPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKAI 122
Score = 37.3 bits (86), Expect = 0.002
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 1001 SNQRLEFLGDTVLQLITSDYLY 1022
++ L ++GD V + +L
Sbjct: 7 NSLALAYMGDAVYEQYIRYHLL 28
>d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic
domain {Thermotoga maritima [TaxId: 2336]}
Length = 169
Score = 84.5 bits (208), Expect = 2e-19
Identities = 43/195 (22%), Positives = 73/195 (37%), Gaps = 48/195 (24%)
Query: 732 RSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIH 791
+ + + F+N LL AL H SY
Sbjct: 9 KIVEEFQKETGINFKNEELLFRALCHSSYANEQNQ------------------------- 43
Query: 792 FQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEE 851
A ++ NE+LEFLGDAV+E L+ +P+ E
Sbjct: 44 -----------------------AGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEV 80
Query: 852 GGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFL 911
G LA ++A + LA +++++ L F+ G + + +A+ FEAL+ A++L
Sbjct: 81 GDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEALLAAIYL 140
Query: 912 DGGIDVADQVFSSVL 926
D G + ++F
Sbjct: 141 DQGYEKIKELFEQEF 155
Score = 39.4 bits (91), Expect = 7e-04
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 964 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG-----SNQRLEFLGDTVLQLITS 1018
K ++ + +G+ F + LL R S G SN++LEFLGD VL+L
Sbjct: 9 KIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVC 68
Query: 1019 DYLY 1022
+ LY
Sbjct: 69 EILY 72
>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain
{Aquifex aeolicus [TaxId: 63363]}
Length = 148
Score = 56.8 bits (136), Expect = 6e-10
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 818 SNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE 877
S H E LEFLGDA+V F L P+ EG L+ +A ++ + LA+++ L
Sbjct: 29 SKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELH 88
Query: 878 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 918
F+ G + + + FEAL A+++D G D
Sbjct: 89 KFIRIKRGKI------NETIIGDVFEALWAAVYIDSGRDAN 123
Score = 43.7 bits (102), Expect = 2e-05
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 734 LNVLEDRIQYKFQNRYLLQLALTHPSYRENF 764
L LE ++ Y F+++ LL+ ALTH SY +
Sbjct: 2 LEQLEKKLGYTFKDKSLLEKALTHVSYSKKE 32
Score = 35.2 bits (80), Expect = 0.012
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 966 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
L+ LE G F LL + T S + LEFLGD ++ D L
Sbjct: 2 LEQLEKKLGYTFKDKSLLEKALTHVSYSKKE----HYETLEFLGDALVNFFIVDLLV 54
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 322
Score = 29.4 bits (66), Expect = 2.1
Identities = 14/107 (13%), Positives = 30/107 (28%), Gaps = 14/107 (13%)
Query: 432 DKLYHYRVTVSPPTNFLINKPTVIEHDNQE----FIFEGFSLFSHHPLEKLPTCKVIRFN 487
DK+Y YR+ P ++ + E + + +L F
Sbjct: 18 DKIYVYRLFNDPEEELQKEGYSIYRLAYENVGIVIDPENLIIATTK---ELEY--EGEFI 72
Query: 488 IQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKD 534
+ I + E + ++L L + +L +
Sbjct: 73 PEGEISFSELR-----NDYQSKLVLRLLKENGIGEYELSKLLRKFRK 114
>d1g4us2 c.45.1.2 (S:297-539) SptP tyrosine phosphatase, catalytic
domain {Salmonella typhimurium [TaxId: 90371]}
Length = 243
Score = 29.3 bits (65), Expect = 2.2
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 4/81 (4%)
Query: 679 KEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMC--DMVQHAMLIPVL--ICHLRFHRSL 734
K S + + + G RTG M +++ + R R+
Sbjct: 163 KNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRDSRNN 222
Query: 735 NVLEDRIQYKFQNRYLLQLAL 755
+LED Q+ QL +
Sbjct: 223 RMLEDASQFVQLKAMQAQLLM 243
>d1xqba_ e.56.1.1 (A:) Hypothetical protein HI0510 {Haemophilus
influenzae [TaxId: 727]}
Length = 231
Score = 28.0 bits (62), Expect = 5.2
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 192 RSESKSRSEVPRQAC-ARRSRSRSRILSPKRSGEALSNLDKW 232
+ K + VPRQ +L P S EA+ L+++
Sbjct: 13 HTPYKEKFSVPRQPNLVEDGVGIVELLPPYNSPEAVRGLEQF 54
>d1lyva_ c.45.1.2 (A:) Protein-tyrosine phosphatase YopH, catalytic
domain {Yersinia enterocolitica [TaxId: 630]}
Length = 283
Score = 27.4 bits (60), Expect = 7.7
Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 10/77 (12%)
Query: 687 RTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAML------IPVLICHLRFHRSLNVLEDR 740
+ + V S G RT + + + ++ +R R+ +++
Sbjct: 204 SAVADDSKLRPVIHSRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKD 263
Query: 741 IQYKFQNRYLLQLALTH 757
Q L++LA
Sbjct: 264 EQLDV----LIKLAEGQ 276
>d1ihma_ b.121.4.3 (A:) Calicivirus capsid protein {Norwalk virus
[TaxId: 11983]}
Length = 492
Score = 27.5 bits (61), Expect = 9.1
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 68 SKSFDCKTGTTQVDNLPSTNVSNQSNPITPQTSTGRTNQYNRWTI 112
+F G+ Q + + S N + I+P S +Q + W I
Sbjct: 321 PDTFVPHLGSIQANGIGSGNYVGVLSWISP-PSHPSGSQVDLWKI 364
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.131 0.390
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,761,914
Number of extensions: 179437
Number of successful extensions: 411
Number of sequences better than 10.0: 1
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 18
Length of query: 1022
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 928
Effective length of database: 1,116,976
Effective search space: 1036553728
Effective search space used: 1036553728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)