BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14777
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B2Q|V Chain V, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|VV Chain v, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 66
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 86 DPIQQLFLDKLSEYKSK-STGGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNF 144
DP+Q+LF+DK+ EY++K T G VD PE +++L +L K + YG K DM FPNF
Sbjct: 2 DPVQKLFVDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQMYG---KADMNTFPNF 58
Query: 145 QFPEPKIE 152
F +PK E
Sbjct: 59 TFEDPKFE 66
>pdb|2CLY|C Chain C, Subcomplex Of The Stator Of Bovine Mitochondrial Atp
Synthase
pdb|2CLY|F Chain F, Subcomplex Of The Stator Of Bovine Mitochondrial Atp
Synthase
Length = 77
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 86 DPIQQLFLDKLSEYKSK-STGGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNF 144
DP+Q+LF+DK+ EY++K T G VD PE +++L +L K + YG K DM FPNF
Sbjct: 6 DPVQKLFVDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQMYG---KADMNTFPNF 62
Query: 145 QFPEPKIE 152
F +PK E
Sbjct: 63 TFEDPKFE 70
>pdb|1VZS|A Chain A, Solution Structure Of Subunit F6 From The Peripheral Stalk
Region Of Atp Synthase From Bovine Heart Mitochondria
Length = 76
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 86 DPIQQLFLDKLSEYKSK-STGGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNF 144
DP+Q+LF+DK+ EY++K T G VD PE +++L +L K + YG K DM FPNF
Sbjct: 5 DPVQKLFVDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQMYG---KADMNTFPNF 61
Query: 145 QFPEPKIE 152
F +PK E
Sbjct: 62 TFEDPKFE 69
>pdb|2WSS|V Chain V, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|Z Chain Z, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
Length = 76
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 86 DPIQQLFLDKLSEYKSK-STGGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNF 144
DP+Q+LF+DK+ EY++K T G VD PE +++L +L K + Y GK D FPNF
Sbjct: 5 DPVQKLFVDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQXY---GKADXNTFPNF 61
Query: 145 QFPEPKIE 152
F +PK E
Sbjct: 62 TFEDPKFE 69
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 30.0 bits (66), Expect = 0.64, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 37 QQLFLDKLSEYKSKSAMLTPQLF 59
++LFL L +YK +SA+L P LF
Sbjct: 304 EELFLRSLQDYKIQSALLVPTLF 326
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 29.6 bits (65), Expect = 0.72, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 37 QQLFLDKLSEYKSKSAMLTPQLFVCVRKN 65
++LFL L +YK +SA+L P LF + K+
Sbjct: 275 EELFLRSLQDYKIQSALLVPTLFSFLAKS 303
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 29.6 bits (65), Expect = 0.73, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 37 QQLFLDKLSEYKSKSAMLTPQLF 59
++LFL L +YK +SA+L P LF
Sbjct: 275 EELFLRSLQDYKIQSALLVPTLF 297
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 29.6 bits (65), Expect = 0.73, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 37 QQLFLDKLSEYKSKSAMLTPQLF 59
++LFL L +YK +SA+L P LF
Sbjct: 270 EELFLRSLQDYKIQSALLVPTLF 292
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 29.6 bits (65), Expect = 0.74, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 37 QQLFLDKLSEYKSKSAMLTPQLF 59
++LFL L +YK +SA+L P LF
Sbjct: 270 EELFLRSLQDYKIQSALLVPTLF 292
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 28.1 bits (61), Expect = 2.1, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 79 VALKNASDPIQQLFLDKLS----EYKSKSTGGKLVDPTPEIERELKADLSKTAKQYG 131
+ +K A D I+ L L + YK + +V P P++ + K L+ TA+ YG
Sbjct: 72 MTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYG 128
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 37 QQLFLDKLSEYKSKSAMLTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQ 90
++ FL L +YK S +L P LF + K S+ L + ++ V + + P+ +
Sbjct: 272 EETFLKTLQDYKCTSVILVPTLFAILNK--SELLNKYDLSNLVEIASGGAPLSK 323
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 37 QQLFLDKLSEYKSKSAMLTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQ 90
++ FL L +YK S +L P LF + K S+ L + ++ V + + P+ +
Sbjct: 272 EETFLKTLQDYKCTSVILVPTLFAILNK--SELLNKYDLSNLVEIASGGAPLSK 323
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 37 QQLFLDKLSEYKSKSAMLTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQ 90
++ FL L +YK + +L P LF + K S+ L + ++ V + + P+ +
Sbjct: 272 EETFLKTLQDYKCTNVILVPTLFAILNK--SELLNKYDLSNLVEIASGGAPLSK 323
>pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|2PMZ|R Chain R, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|3HKZ|B Chain B, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
pdb|3HKZ|J Chain J, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
Length = 1124
Score = 25.8 bits (55), Expect = 9.5, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 79 VALKNASDPIQQLFLDKLSEY--KSKSTGGKLV 109
+ LK+A DPI Q LDKL E K GG +
Sbjct: 121 IMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFI 153
>pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|R Chain R, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2Y0S|B Chain B, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|2Y0S|R Chain R, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|4AYB|B Chain B, Rnap At 3.2ang
pdb|4B1O|B Chain B, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|R Chain R, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 1131
Score = 25.8 bits (55), Expect = 9.7, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 79 VALKNASDPIQQLFLDKLSEY--KSKSTGGKLV 109
+ LK+A DPI Q LDKL E K GG +
Sbjct: 124 IMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFI 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,314,574
Number of Sequences: 62578
Number of extensions: 156841
Number of successful extensions: 335
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 29
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)