BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14777
(158 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24407|ATP5J_DROME ATP synthase-coupling factor 6, mitochondrial OS=Drosophila
melanogaster GN=ATPsyn-Cf6 PE=3 SV=1
Length = 106
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 61/82 (74%)
Query: 72 RNLATSYVALKNASDPIQQLFLDKLSEYKSKSTGGKLVDPTPEIERELKADLSKTAKQYG 131
RN AL ASDPIQQLFLDK+ EYK KS GGKLVD P+IERELK +L + AKQ+G
Sbjct: 19 RNFGIVAPALNKASDPIQQLFLDKVREYKQKSAGGKLVDSNPDIERELKTELDRVAKQFG 78
Query: 132 GDGKEDMTKFPNFQFPEPKIEP 153
DGK DM KFP FQFP+ K++P
Sbjct: 79 SDGKTDMLKFPEFQFPDVKVDP 100
>sp|Q5RBY3|ATP5J_PONAB ATP synthase-coupling factor 6, mitochondrial OS=Pongo abelii
GN=ATP5J PE=3 SV=1
Length = 107
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Query: 59 FVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSK-STGGKLVDPTPEIER 117
F +R VS L RN+ + VA DPIQ+LF+DK+ EYKSK T G VD PE ++
Sbjct: 9 FSVIRSAVSVYLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGPVDAGPEYQQ 68
Query: 118 ELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIE 152
EL+ +L K + +G DM FP F+F +PK E
Sbjct: 69 ELEKELFKLKQMFGN---ADMNTFPAFKFEDPKFE 100
>sp|Q8SPH6|ATP5J_MACFA ATP synthase-coupling factor 6, mitochondrial OS=Macaca
fascicularis GN=ATP5J PE=3 SV=1
Length = 108
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 61 CVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSK-STGGKLVDPTPEIEREL 119
+R VS + RN+ + VA DP+Q+LF+DK+ EYKSK T G VD PE ++EL
Sbjct: 12 IIRSAVSVHFRRNIGVTAVAFNKELDPVQKLFVDKIREYKSKRQTSGGPVDTGPEYQQEL 71
Query: 120 KADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIE 152
+ +L K + + GK DM FP F+F +PK E
Sbjct: 72 EKELFKLKQMF---GKADMNTFPTFKFEDPKFE 101
>sp|P18859|ATP5J_HUMAN ATP synthase-coupling factor 6, mitochondrial OS=Homo sapiens
GN=ATP5J PE=1 SV=1
Length = 108
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 7/104 (6%)
Query: 53 MLTPQLF---VCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSK-STGGKL 108
M+ +LF +R VS +L RN+ + VA DPIQ+LF+DK+ EYKSK T G
Sbjct: 1 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP 60
Query: 109 VDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIE 152
VD + E ++EL+ +L K + +G DM FP F+F +PK E
Sbjct: 61 VDASSEYQQELERELFKLKQMFGN---ADMNTFPTFKFEDPKFE 101
>sp|P21571|ATP5J_RAT ATP synthase-coupling factor 6, mitochondrial OS=Rattus norvegicus
GN=Atp5j PE=1 SV=1
Length = 108
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 58/94 (61%), Gaps = 6/94 (6%)
Query: 61 CVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSK--STGGKLVDPTPEIERE 118
+R VS +L RN+ + VA DP+Q+LFLDK+ EYK+K ++GG VD PE ++E
Sbjct: 12 VLRSAVSVHLRRNIGVTAVAFNKELDPVQKLFLDKIREYKAKRLASGGP-VDTGPEYQQE 70
Query: 119 LKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIE 152
+ +L K + Y GK +M KFP F F +PK E
Sbjct: 71 VDRELFKLKQMY---GKGEMDKFPTFNFEDPKFE 101
>sp|P02721|ATP5J_BOVIN ATP synthase-coupling factor 6, mitochondrial OS=Bos taurus
GN=ATP5J PE=1 SV=2
Length = 108
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 60/104 (57%), Gaps = 7/104 (6%)
Query: 53 MLTPQLF---VCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSK-STGGKL 108
M+ +LF V+ +S + RN+ + VA DP+Q+LF+DK+ EY++K T G
Sbjct: 1 MILQRLFRLSSAVQSAISVSWRRNIGITAVAFNKELDPVQKLFVDKIREYRTKRQTSGGP 60
Query: 109 VDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIE 152
VD PE +++L +L K + Y GK DM FPNF F +PK E
Sbjct: 61 VDAGPEYQQDLDRELFKLKQMY---GKADMNTFPNFTFEDPKFE 101
>sp|P97450|ATP5J_MOUSE ATP synthase-coupling factor 6, mitochondrial OS=Mus musculus
GN=Atp5j PE=1 SV=1
Length = 108
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 6/94 (6%)
Query: 61 CVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSK--STGGKLVDPTPEIERE 118
+R VS +L RN+ + VA DP+Q+LF+DK+ EYKSK ++GG VD PE +++
Sbjct: 12 VLRSAVSVHLKRNIGVTAVAFNKELDPVQKLFVDKIREYKSKRQASGGP-VDIGPEYQQD 70
Query: 119 LKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIE 152
L +L K + Y GK +M FP F+F +PK E
Sbjct: 71 LDRELYKLKQMY---GKGEMDTFPTFKFDDPKFE 101
>sp|P13618|ATP5J_PIG ATP synthase-coupling factor 6, mitochondrial OS=Sus scrofa
GN=ATP5J PE=1 SV=1
Length = 76
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 86 DPIQQLFLDKLSEYKSK-STGGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNF 144
DP+Q+LF+DK+ EY++K T G VD PE +++L +L K + YG K DM FPNF
Sbjct: 5 DPVQKLFVDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQMYG---KADMNTFPNF 61
Query: 145 QFPEPKIE 152
F +PK E
Sbjct: 62 TFEDPKFE 69
>sp|Q85FN8|CHLB_ADICA Light-independent protochlorophyllide reductase subunit B
OS=Adiantum capillus-veneris GN=chlB PE=2 SV=2
Length = 518
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 100 KSKSTGGKLVDPTPEIERELK 120
KS STGGK +D TPE E ELK
Sbjct: 454 KSLSTGGKSIDWTPEAESELK 474
>sp|Q10297|IMB5_SCHPO Importin subunit beta-5 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=kap114 PE=3 SV=3
Length = 993
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 47 YKSKSAMLTPQLFVCVRKNVSQNLTRNLATSYVALKNAS--------DPI---QQLFLDK 95
Y S+S ++ Q F + N+ L + Y A+K PI Q + L+
Sbjct: 488 YFSESTVVASQFFQIIMNNLVNALQVD-TVQYAAMKAIERFCSVGKVKPILSLQPMILEV 546
Query: 96 LSEYKSKSTGGKLVDPTPEIERELKADLSKTAK 128
LS+Y SKS+ LV I +K D +K A+
Sbjct: 547 LSQYASKSSDEALVLLVEAISSAVKLDCAKAAE 579
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,546,033
Number of Sequences: 539616
Number of extensions: 2028562
Number of successful extensions: 5213
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5177
Number of HSP's gapped (non-prelim): 29
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)