Query psy14777
Match_columns 158
No_of_seqs 112 out of 130
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 20:21:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cly_C ATP synthase coupling f 100.0 7.1E-40 2.4E-44 235.6 7.7 74 81-157 1-75 (77)
2 2cly_C ATP synthase coupling f 99.2 1.6E-12 5.6E-17 93.4 1.3 24 29-52 1-24 (77)
3 3no7_A PARB, putative plasmid 58.6 9.1 0.00031 27.4 3.4 26 108-133 37-62 (80)
4 3bbn_B Ribosomal protein S2; s 54.4 15 0.00052 30.0 4.5 53 92-146 110-162 (231)
5 2e9x_A DNA replication complex 54.3 8.5 0.00029 28.9 2.8 47 93-140 84-138 (149)
6 2vqe_B 30S ribosomal protein S 44.7 25 0.00086 29.2 4.5 59 86-146 104-163 (256)
7 3v26_X ORF3, ORF95, probable s 43.2 19 0.00064 25.3 3.0 28 106-133 7-34 (101)
8 1imu_A Hypothetical protein HI 36.8 29 0.001 24.3 3.2 28 106-133 7-34 (107)
9 4fhn_B Nucleoporin NUP120; pro 36.8 14 0.00048 35.1 1.9 26 113-138 1110-1135(1139)
10 2efk_A CDC42-interacting prote 36.0 44 0.0015 26.0 4.4 33 91-133 21-54 (301)
11 4dyl_A Tyrosine-protein kinase 35.0 25 0.00085 29.9 3.0 32 91-132 26-58 (406)
12 3r8n_B 30S ribosomal protein S 29.6 23 0.0008 28.6 1.9 53 92-146 102-154 (218)
13 4abx_A DNA repair protein RECN 29.5 82 0.0028 23.6 4.8 24 109-132 117-143 (175)
14 2k6l_A Putative uncharacterize 26.7 30 0.001 22.8 1.7 26 112-141 11-36 (51)
15 2zrr_A Mundticin KS immunity p 25.9 1.3E+02 0.0044 22.7 5.3 54 33-98 54-110 (118)
16 2k19_A Putative piscicolin 126 25.2 1.6E+02 0.0055 21.5 5.5 55 32-98 33-90 (98)
17 4fyl_A Ribosome hibernation pr 24.9 36 0.0012 23.4 1.9 27 106-132 7-33 (95)
18 2q9q_C DNA replication complex 24.7 1.1E+02 0.0038 23.6 4.9 47 93-140 84-138 (196)
19 2v0o_A FCHO2, FCH domain only 24.4 73 0.0025 24.4 3.8 33 91-133 32-65 (276)
20 2ywq_A Protein Y, ribosomal su 23.7 25 0.00085 24.3 0.9 28 106-133 8-35 (105)
21 1kkx_A Transcription regulator 21.0 74 0.0025 23.2 3.1 28 84-111 14-50 (123)
22 2efl_A Formin-binding protein 20.9 1.3E+02 0.0043 23.2 4.6 32 92-133 29-61 (305)
No 1
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=100.00 E-value=7.1e-40 Score=235.55 Aligned_cols=74 Identities=41% Similarity=0.751 Sum_probs=63.3
Q ss_pred hhhcCChHHHHHHHHHHhhhhcCC-CCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcCccCCCCcCCCCCcccccCC
Q psy14777 81 LKNASDPIQQLFLDKLSEYKSKST-GGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIEPQVSR 157 (158)
Q Consensus 81 ~~ka~DPIQkLFldKIREYKsKs~-gGklVDa~Pe~ekel~~el~kL~r~YGgg~~~DmtkFP~FkF~epk~d~i~~~ 157 (158)
|||++||||||||||||||++||+ +|+|||+||||++||++||+||+++|||| ||++||+|||+||+|||++.+
T Consensus 1 ~~k~~DPIQqLFldKIREYk~Ks~~~G~lVD~~Pe~~kel~~el~kL~~~YGgg---Dm~kFP~FkF~~pk~d~~~~~ 75 (77)
T 2cly_C 1 FNKELDPVQKLFVDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQMYGKA---DMNTFPNFTFEDPKFEVVEKP 75 (77)
T ss_dssp ----CCGGGHHHHHHHHHHHHHHTCCSSSSSCCTHHHHHHHHHHHHHHHHHCSS---CTTSCCCCCCCCCCCC-----
T ss_pred CCcccchHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHHHHHHHHHCcc---hHhhCCCCCCCCCCcccCCCC
Confidence 478999999999999999999976 78899999999999999999999999998 999999999999999999865
No 2
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=99.23 E-value=1.6e-12 Score=93.39 Aligned_cols=24 Identities=42% Similarity=0.872 Sum_probs=19.5
Q ss_pred hhhccChHHHHHHHHHhhhhcccc
Q psy14777 29 LKNASDPIQQLFLDKLSEYKSKSA 52 (158)
Q Consensus 29 ~~k~~dpiq~lf~dkirey~~ks~ 52 (158)
|||+.||||||||||||||++||+
T Consensus 1 ~~k~~DPIQqLFldKIREYk~Ks~ 24 (77)
T 2cly_C 1 FNKELDPVQKLFVDKIREYRTKRQ 24 (77)
T ss_dssp ----CCGGGHHHHHHHHHHHHHHT
T ss_pred CCcccchHHHHHHHHHHHHHHhcc
Confidence 689999999999999999999987
No 3
>3no7_A PARB, putative plasmid related protein; ribbon-helix-helix, DNA binding protein; 1.40A {Leifsonia xyli subsp}
Probab=58.63 E-value=9.1 Score=27.39 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCC
Q psy14777 108 LVDPTPEIERELKADLSKTAKQYGGD 133 (158)
Q Consensus 108 lVDa~Pe~ekel~~el~kL~r~YGgg 133 (158)
...-+-=+++.+..|++||.++|++|
T Consensus 37 ~~slS~Fi~aAv~~ev~rlE~kyN~G 62 (80)
T 3no7_A 37 HRTFSGFIAAALDAEVQRLEQRYNEG 62 (80)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34455668899999999999999998
No 4
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=54.36 E-value=15 Score=30.02 Aligned_cols=53 Identities=25% Similarity=0.340 Sum_probs=36.6
Q ss_pred HHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcCccCCCCcC
Q psy14777 92 FLDKLSEYKSKSTGGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNFQF 146 (158)
Q Consensus 92 FldKIREYKsKs~gGklVDa~Pe~ekel~~el~kL~r~YGgg~~~DmtkFP~FkF 146 (158)
-+.+++|.+.....|.+-.-+-...-.+..|++||.+.+||= -||++.|+.=|
T Consensus 110 ~i~~~~~l~~~~~~g~~~~l~Kke~~~~~r~~~kl~k~lgGi--k~m~~~Pdll~ 162 (231)
T 3bbn_B 110 RLHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGI--KYMTGLPDIVI 162 (231)
T ss_dssp HHHHHHHHHHSTTSTTTTTSCHHHHHHHHHHHHHHTTSTTST--TSCCSCCSEEE
T ss_pred HHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHhhhcc--cccccCCCEEE
Confidence 356667764443444343444444556889999999999985 68999998766
No 5
>2e9x_A DNA replication complex GINS protein PSF1; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.1 PDB: 2eho_B*
Probab=54.28 E-value=8.5 Score=28.86 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=32.2
Q ss_pred HHHHHhhhhcCCCCC--------CCCCCHHHHHHHHHHHHHHHHHhCCCCCCcCcc
Q psy14777 93 LDKLSEYKSKSTGGK--------LVDPTPEIERELKADLSKTAKQYGGDGKEDMTK 140 (158)
Q Consensus 93 ldKIREYKsKs~gGk--------lVDa~Pe~ekel~~el~kL~r~YGgg~~~Dmtk 140 (158)
++||++|.-.. |+. +-..--+|-+++.+-|......||++.|.|+|.
T Consensus 84 l~kI~~~~w~~-g~~L~~~~~~~LS~~E~~f~~~Y~~lL~~y~~~~~~~~~ldlt~ 138 (149)
T 2e9x_A 84 LLRIRALRWEY-GSVLPNALRFHMAAEEMEWFNNYKRSLATYMRSLGGDEGLDITQ 138 (149)
T ss_dssp HHHHHHHHHHH-CSSCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCTTS
T ss_pred HHHHHHHHHHc-cccCChHHHhcCCHHHHHHHHHHHHHHHHHHHhcCcccccCCCC
Confidence 68888886552 221 111112455788999999999999877789886
No 6
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=44.67 E-value=25 Score=29.21 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=38.8
Q ss_pred ChHH-HHHHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcCccCCCCcC
Q psy14777 86 DPIQ-QLFLDKLSEYKSKSTGGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNFQF 146 (158)
Q Consensus 86 DPIQ-kLFldKIREYKsKs~gGklVDa~Pe~ekel~~el~kL~r~YGgg~~~DmtkFP~FkF 146 (158)
+..+ +--+.+++++......|..=.-+-...-.+..|++||.+.+||= -+|...|+.=|
T Consensus 104 N~~ti~~~i~~l~~le~~~~~g~f~~l~Kke~~~~~r~~~kL~k~lgGi--k~m~~~Pdll~ 163 (256)
T 2vqe_B 104 NFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGF--RLLKRLPDAIF 163 (256)
T ss_dssp THHHHHHHHHHHHHHHHHTTSTTSSCSCHHHHTTHHHHHHHHHHHSTTG--GGCSSCCSEEE
T ss_pred CHHHHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHHHHhhcCc--cccccCCCEEE
Confidence 4443 33477888885554444222222233345788999999999985 58999998766
No 7
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=43.17 E-value=19 Score=25.29 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=24.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCC
Q psy14777 106 GKLVDPTPEIERELKADLSKTAKQYGGD 133 (158)
Q Consensus 106 GklVDa~Pe~ekel~~el~kL~r~YGgg 133 (158)
|+-+|.++.++.-.++.++||.+-|..-
T Consensus 7 g~~ie~t~alr~~ve~Kl~kL~k~~d~i 34 (101)
T 3v26_X 7 GNNVEITEALREFVTAKFAKLEQYFDRI 34 (101)
T ss_dssp CSSSCCCHHHHHHHHHHHHHHHTTCSCC
T ss_pred EecccCCHHHHHHHHHHHHHHHhhcCCC
Confidence 6679999999999999999999888653
No 8
>1imu_A Hypothetical protein HI0257; dsRNA binding protein, proteome, solution structure, ribosome, structure 2 function project, S2F; NMR {Haemophilus influenzae} SCOP: d.204.1.1
Probab=36.81 E-value=29 Score=24.27 Aligned_cols=28 Identities=32% Similarity=0.312 Sum_probs=24.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCC
Q psy14777 106 GKLVDPTPEIERELKADLSKTAKQYGGD 133 (158)
Q Consensus 106 GklVDa~Pe~ekel~~el~kL~r~YGgg 133 (158)
|+-+|.++.++.-.++.++||.+-|..-
T Consensus 7 g~~i~~t~alr~~v~~kl~kL~r~~~~i 34 (107)
T 1imu_A 7 SKQMDITPAIREHLEERLAKLGKWQTQL 34 (107)
T ss_dssp CSSSCCCHHHHHHHHHHHHHHHTSSCCC
T ss_pred EecCcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 6679999999999999999999888653
No 9
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=36.77 E-value=14 Score=35.14 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcC
Q psy14777 113 PEIERELKADLSKTAKQYGGDGKEDM 138 (158)
Q Consensus 113 Pe~ekel~~el~kL~r~YGgg~~~Dm 138 (158)
.+++|||..+|.||+.++|..-+++|
T Consensus 1110 ~DirkEY~~~l~rla~~~~~~~~~~~ 1135 (1139)
T 4fhn_B 1110 DAIVAEYHLQLKDVAVQVTAEMSSAM 1135 (1139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccc
Confidence 57999999999999999997554444
No 10
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=35.95 E-value=44 Score=26.01 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=27.8
Q ss_pred HHHHHHHhh-hhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCC
Q psy14777 91 LFLDKLSEY-KSKSTGGKLVDPTPEIERELKADLSKTAKQYGGD 133 (158)
Q Consensus 91 LFldKIREY-KsKs~gGklVDa~Pe~ekel~~el~kL~r~YGgg 133 (158)
-+++.|.+| +.+ .++|++|...|.+|+++|.+.
T Consensus 21 ~~~~el~~f~keR----------a~iE~eYak~L~kLakk~~~~ 54 (301)
T 2efk_A 21 DLLDRYVKFVKER----------TEVEQAYAKQLRSLVKKYLPK 54 (301)
T ss_dssp HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhcc
Confidence 467788888 666 679999999999999999864
No 11
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=34.99 E-value=25 Score=29.87 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=23.8
Q ss_pred HHHHHHHhh-hhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhCC
Q psy14777 91 LFLDKLSEY-KSKSTGGKLVDPTPEIERELKADLSKTAKQYGG 132 (158)
Q Consensus 91 LFldKIREY-KsKs~gGklVDa~Pe~ekel~~el~kL~r~YGg 132 (158)
-|++.|++| +.+ .++|++|...|.+|+++|.+
T Consensus 26 ~lledl~~F~reR----------A~IE~eYAk~L~kLakk~~~ 58 (406)
T 4dyl_A 26 RLLEGMRKWMAQR----------VKSDREYAGLLHHMSLQDSG 58 (406)
T ss_dssp HHHHHHHHHHHHH----------HHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhc
Confidence 478889998 666 68999999999999999986
No 12
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=29.59 E-value=23 Score=28.61 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=32.9
Q ss_pred HHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcCccCCCCcC
Q psy14777 92 FLDKLSEYKSKSTGGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNFQF 146 (158)
Q Consensus 92 FldKIREYKsKs~gGklVDa~Pe~ekel~~el~kL~r~YGgg~~~DmtkFP~FkF 146 (158)
-+.++++.......|..=.-+-...-.+..|++||.+.+||= -||...|+.=|
T Consensus 102 ~i~~l~~le~~~~~~~f~~l~Kke~~~~~re~~kl~k~lgGi--k~m~~~Pdllv 154 (218)
T 3r8n_B 102 SIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGI--KDMGGLPDALF 154 (218)
T ss_dssp HHHHHHHHHTTTSSSSCSSSCTTTTTTTHHHHHHHHSSSSSS--SSCSSCCCSCE
T ss_pred HHHHHHHHHHHHhcchhhhccHHHHHHHHHHHHHHHHhhccc--cccccCCCeEE
Confidence 356666664443334221111122234678999999999985 58999998754
No 13
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=29.50 E-value=82 Score=23.64 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=16.9
Q ss_pred CCCCHHHHHHHH---HHHHHHHHHhCC
Q psy14777 109 VDPTPEIERELK---ADLSKTAKQYGG 132 (158)
Q Consensus 109 VDa~Pe~ekel~---~el~kL~r~YGg 132 (158)
+|..|+--.+++ ..+.+|+|+||.
T Consensus 117 le~DP~rL~~ie~RL~~l~~L~RKyg~ 143 (175)
T 4abx_A 117 SAADPEALDRVEARLSALSKLKNKYGP 143 (175)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 677888555544 456778899985
No 14
>2k6l_A Putative uncharacterized protein; xanthonomas axonopodis, RHH, structural proteomics, plasmid, hypothetical DNA binding protein; NMR {Xanthomonas axonopodis PV}
Probab=26.68 E-value=30 Score=22.85 Aligned_cols=26 Identities=31% Similarity=0.682 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCcCccC
Q psy14777 112 TPEIERELKADLSKTAKQYGGDGKEDMTKF 141 (158)
Q Consensus 112 ~Pe~ekel~~el~kL~r~YGgg~~~DmtkF 141 (158)
++|+++.|.. .|+.+||+ .++||++|
T Consensus 11 s~d~d~~lR~---~l~~~~G~-rKGdlSkf 36 (51)
T 2k6l_A 11 SPDVDQSVRM---FIAAQGGG-RKGDLSRF 36 (51)
T ss_dssp CHHHHHHHHH---HHHHHCSC-CSSCHHHH
T ss_pred CHHHHHHHHH---HHHHhcCC-ccccHHHH
Confidence 4555555543 34555555 56699887
No 15
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=25.87 E-value=1.3e+02 Score=22.74 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=37.5
Q ss_pred cChHHHHHHHHHhhhhccccchhhhhhhhhhhhhhhhhhh-hhhhhHHHhhh--cCChHHHHHHHHHHh
Q psy14777 33 SDPIQQLFLDKLSEYKSKSAMLTPQLFVCVRKNVSQNLTR-NLATSYVALKN--ASDPIQQLFLDKLSE 98 (158)
Q Consensus 33 ~dpiq~lf~dkirey~~ks~Mls~~l~~~~r~a~~~~~rR-nig~sA~a~~k--a~DPIQkLFldKIRE 98 (158)
..|.|+++..-..|.+++.. +++.++.| |+-+|.+..+. .+-|.|.--++++|+
T Consensus 54 ~~~Lk~vL~~Y~~ELk~~~t------------SvPfILSRMNldIS~vL~~n~I~LS~~qs~~LK~Lr~ 110 (118)
T 2zrr_A 54 NESLRKVLGSYLKKLKNEGT------------SVPLVLSRMNIEISNAIKKDGVSLNENQSKKLKELMS 110 (118)
T ss_dssp SHHHHHHHHHHHHHHHHCCS------------CHHHHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHhcCCC------------CchhHHHHhhHHHHHHHHHCCcccCHHHHHHHHHHHH
Confidence 46899999888888887764 34555554 77777776653 266777766777664
No 16
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=25.21 E-value=1.6e+02 Score=21.47 Aligned_cols=55 Identities=27% Similarity=0.327 Sum_probs=38.3
Q ss_pred ccChHHHHHHHHHhhhhccccchhhhhhhhhhhhhhhhhhh-hhhhhHHHhhh--cCChHHHHHHHHHHh
Q psy14777 32 ASDPIQQLFLDKLSEYKSKSAMLTPQLFVCVRKNVSQNLTR-NLATSYVALKN--ASDPIQQLFLDKLSE 98 (158)
Q Consensus 32 ~~dpiq~lf~dkirey~~ks~Mls~~l~~~~r~a~~~~~rR-nig~sA~a~~k--a~DPIQkLFldKIRE 98 (158)
...|.|+++..--.|.+++.. +++.++.| |+-+|.+..+. .+-|.|.--++++|+
T Consensus 33 ~~~~Lk~vL~~Y~~EL~~~~t------------SvP~ILSRMNldiS~vl~~n~i~Ls~~qs~~lK~Lr~ 90 (98)
T 2k19_A 33 DNESLKKVLENYLEELKQKSA------------SVPLILSRMNLDISKAIRNDGVTLSDYQSKKLKELTS 90 (98)
T ss_dssp SCSSTHHHHHHHHHHHHSSSS------------CHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhcCCC------------cchHHHHHhhHHHHHHHHHCCcccCHHHHHHHHHHHH
Confidence 357899999999999888764 34555544 77777776653 366777766676665
No 17
>4fyl_A Ribosome hibernation protein YHBH; beta-alpha-beta-BETA-beta-alpha secondary structure fold SIM YFIA of E. coli; HET: FME; 1.60A {Vibrio cholerae}
Probab=24.93 E-value=36 Score=23.38 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=23.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCC
Q psy14777 106 GKLVDPTPEIERELKADLSKTAKQYGG 132 (158)
Q Consensus 106 GklVDa~Pe~ekel~~el~kL~r~YGg 132 (158)
|+-+|.||.++.-.++.++||.+-|..
T Consensus 7 g~~i~vt~al~~~v~~Kl~kl~k~~~~ 33 (95)
T 4fyl_A 7 GHHIDLTDSMQDYVHSKFDKLERFFDH 33 (95)
T ss_dssp EESSCCCHHHHHHHHHHHHHHTTTCCC
T ss_pred EECCccCHHHHHHHHHHHHHHHHhcCC
Confidence 567999999999999999999877654
No 18
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Probab=24.67 E-value=1.1e+02 Score=23.61 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=31.0
Q ss_pred HHHHHhhhhcCCCC--------CCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcCcc
Q psy14777 93 LDKLSEYKSKSTGG--------KLVDPTPEIERELKADLSKTAKQYGGDGKEDMTK 140 (158)
Q Consensus 93 ldKIREYKsKs~gG--------klVDa~Pe~ekel~~el~kL~r~YGgg~~~Dmtk 140 (158)
++||++|.-.. |+ .+-.+--+|-+++.+-++.....+|++.+.|+|.
T Consensus 84 l~KI~~~~w~~-~~~l~~~~~~~LS~~E~~y~~~y~~ll~~y~~~~~~~~~ldlt~ 138 (196)
T 2q9q_C 84 LLRIRALRWEY-GSILPNALRFHMAAEEMEWFNNYKRSLATYMRSLGGDEGLDITQ 138 (196)
T ss_dssp HHHHHHHHHHT-CSSCCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSSSSCCCTTS
T ss_pred HHHHHHHHHHh-cccCCHHHHhhCCHHHHHHHHHHHHHHHHHHHhcccccCcCccC
Confidence 67888885441 22 1222233566788999999999998666678874
No 19
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=24.39 E-value=73 Score=24.39 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=27.5
Q ss_pred HHHHHHHhh-hhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCC
Q psy14777 91 LFLDKLSEY-KSKSTGGKLVDPTPEIERELKADLSKTAKQYGGD 133 (158)
Q Consensus 91 LFldKIREY-KsKs~gGklVDa~Pe~ekel~~el~kL~r~YGgg 133 (158)
.+++.|.+| +.+ .++|++|...|.+|+++|.++
T Consensus 32 ~~~~el~~f~~eR----------a~iE~eYak~L~kLa~~~~~~ 65 (276)
T 2v0o_A 32 ISTKELADFVRER----------ATIEEAYSRSMTKLAKSASNY 65 (276)
T ss_dssp HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhcCCC
Confidence 467778877 566 689999999999999999764
No 20
>2ywq_A Protein Y, ribosomal subunit interface protein; sigma-54 modulation protein family, structural genomics; 2.64A {Thermus thermophilus} SCOP: d.204.1.1
Probab=23.75 E-value=25 Score=24.32 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=24.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCC
Q psy14777 106 GKLVDPTPEIERELKADLSKTAKQYGGD 133 (158)
Q Consensus 106 GklVDa~Pe~ekel~~el~kL~r~YGgg 133 (158)
|+-+|.++.++.-.++.++||.+-|..-
T Consensus 8 g~~i~~t~al~~~v~~kl~kL~r~~~~i 35 (105)
T 2ywq_A 8 GRNLEITDAIRDYVEKKLARLDRYQDGE 35 (105)
T ss_dssp EETSCCCHHHHHHHHHHHHGGGGSCSSC
T ss_pred EecCcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 5569999999999999999999888653
No 21
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=21.02 E-value=74 Score=23.24 Aligned_cols=28 Identities=21% Similarity=0.446 Sum_probs=19.9
Q ss_pred cCChHHHHHHHHHHhh-hhcC--------CCCCCCCC
Q psy14777 84 ASDPIQQLFLDKLSEY-KSKS--------TGGKLVDP 111 (158)
Q Consensus 84 a~DPIQkLFldKIREY-KsKs--------~gGklVDa 111 (158)
+..+....|++.|++| +++. -||+.||-
T Consensus 14 ~~~~~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~lDL 50 (123)
T 1kkx_A 14 SNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINL 50 (123)
T ss_dssp -CCCHHHHHHHHHHHHHHHTTCSSSSCCCCSSSSCCT
T ss_pred CcchhHHHHHHHHHHHHHHcCCCCCcCceECCEeecH
Confidence 5678899999999999 3331 26777774
No 22
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=20.94 E-value=1.3e+02 Score=23.25 Aligned_cols=32 Identities=28% Similarity=0.477 Sum_probs=27.1
Q ss_pred HHHHHHhh-hhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCC
Q psy14777 92 FLDKLSEY-KSKSTGGKLVDPTPEIERELKADLSKTAKQYGGD 133 (158)
Q Consensus 92 FldKIREY-KsKs~gGklVDa~Pe~ekel~~el~kL~r~YGgg 133 (158)
+++.|.+| +.+ .++|++|...|.+|++.|.+.
T Consensus 29 ~~~el~~f~~eR----------a~iE~eYak~L~kLa~~~~~~ 61 (305)
T 2efl_A 29 ILEKYIKFVKER----------TEIELSYAKQLRNLSKKYQPK 61 (305)
T ss_dssp HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhccc
Confidence 67778887 555 689999999999999999764
Done!