RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14777
(158 letters)
>gnl|CDD|218620 pfam05511, ATP-synt_F6, Mitochondrial ATP synthase coupling factor
6. Coupling factor 6 (F6) is a component of
mitochondrial ATP synthase which is required for the
interactions of the catalytic and proton-translocating
segments.
Length = 99
Score = 113 bits (285), Expect = 1e-33
Identities = 52/97 (53%), Positives = 63/97 (64%), Gaps = 2/97 (2%)
Query: 54 LTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEY--KSKSTGGKLVDP 111
L + +R S L RN+ + VA DPIQQLF+DK+ EY KSKS+GGKLVD
Sbjct: 3 LQRRASSVLRSACSVVLRRNIGVTAVAFNKELDPIQQLFVDKIREYKQKSKSSGGKLVDA 62
Query: 112 TPEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPE 148
PE E+ELK +L K AKQYGG +DMTKFP F+F E
Sbjct: 63 GPEYEKELKEELEKLAKQYGGGSGDDMTKFPKFKFEE 99
>gnl|CDD|172956 PRK14483, PRK14483, DhaKLM operon coactivator DhaQ; Provisional.
Length = 329
Score = 28.5 bits (64), Expect = 1.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 14 VSQNLTRNLATSYVALKNASDPIQQLFLDKLSE 46
+ +LT N+AT VAL A+ P+ L L+E
Sbjct: 176 LGLSLTENIATLGVALSPANLPVAGLPSFDLNE 208
Score = 28.5 bits (64), Expect = 1.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 66 VSQNLTRNLATSYVALKNASDPIQQLFLDKLSE 98
+ +LT N+AT VAL A+ P+ L L+E
Sbjct: 176 LGLSLTENIATLGVALSPANLPVAGLPSFDLNE 208
>gnl|CDD|235561 PRK05686, fliG, flagellar motor switch protein G; Validated.
Length = 339
Score = 27.8 bits (63), Expect = 2.3
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 27 VALKNASDPIQQLFLDKLSE 46
+ALK AS+ +++ FL +S+
Sbjct: 269 LALKGASEELREKFLSNMSK 288
Score = 27.8 bits (63), Expect = 2.3
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 79 VALKNASDPIQQLFLDKLSE 98
+ALK AS+ +++ FL +S+
Sbjct: 269 LALKGASEELREKFLSNMSK 288
>gnl|CDD|182099 PRK09831, PRK09831, putative acyltransferase; Provisional.
Length = 147
Score = 27.2 bits (60), Expect = 2.5
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 88 IQQLFLDKLSEYKSKSTGGKLVDPTPEIERELKADLSKTAKQY 130
I LF+D EY + L+ P + E EL D S TAK +
Sbjct: 75 IDMLFVD--PEYTRRGVASALLKPLIKSESELTVDASITAKPF 115
>gnl|CDD|190075 pfam01706, FliG_C, FliG C-terminal domain. FliG is a component
of the flageller rotor, present in about 25 copies per
flagellum. This domain functions specifically in motor
rotation.
Length = 110
Score = 26.7 bits (60), Expect = 3.1
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 27 VALKNASDPIQQLFLDKLSE 46
+ALK AS+ +++ L +S+
Sbjct: 47 LALKGASEELREKILSNMSK 66
Score = 26.7 bits (60), Expect = 3.1
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 79 VALKNASDPIQQLFLDKLSE 98
+ALK AS+ +++ L +S+
Sbjct: 47 LALKGASEELREKILSNMSK 66
>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 262
Score = 26.9 bits (60), Expect = 4.6
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 57 QLFV----CVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSTGGKLVDPT 112
+FV ++ VS+ N ++ L N + IQ D L K T +L +
Sbjct: 53 NVFVTVVGQIQYRVSEE---NATDAFYKLGNPEEQIQSYVFDVLRARIPKLTLDELFEQK 109
Query: 113 PEIERELKADLSKTAKQYG 131
EI + ++ +L + +YG
Sbjct: 110 DEIAKAVEEELREAMSRYG 128
>gnl|CDD|225410 COG2854, Ttg2D, ABC-type transport system involved in resistance to
organic solvents, auxiliary component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 202
Score = 25.8 bits (57), Expect = 9.1
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 9/95 (9%)
Query: 25 SYVALKNASDP---IQQLFLDKLSEYKSKSAMLTP---QLFVCVRKNVSQNLTRNLATSY 78
S +A ++P +Q+ LS K+ A + L V + + + A
Sbjct: 19 SSLAAAAPANPYSLVQEAADKVLSILKNNQAKIKQDPQYLRQIVDQELLPYVDFKYAAKL 78
Query: 79 VA---LKNASDPIQQLFLDKLSEYKSKSTGGKLVD 110
V K AS +Q F Y ++ G L+D
Sbjct: 79 VLGKYYKTASPEQRQAFFKAFRTYLEQTYGQALLD 113
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.128 0.354
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,541,384
Number of extensions: 651112
Number of successful extensions: 464
Number of sequences better than 10.0: 1
Number of HSP's gapped: 462
Number of HSP's successfully gapped: 23
Length of query: 158
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 69
Effective length of database: 6,990,096
Effective search space: 482316624
Effective search space used: 482316624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.1 bits)